Query 011082
Match_columns 494
No_of_seqs 508 out of 3051
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 20:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 2.4E-74 8.3E-79 591.4 30.8 329 48-483 1-333 (342)
2 1udx_A The GTP-binding protein 100.0 1.4E-70 4.7E-75 576.2 33.2 324 48-483 1-328 (416)
3 2qtf_A Protein HFLX, GTP-bindi 100.0 3.8E-29 1.3E-33 258.3 9.5 253 208-483 90-357 (364)
4 1xzp_A Probable tRNA modificat 99.9 5.7E-28 1.9E-32 257.8 -8.5 160 304-479 241-404 (482)
5 4a9a_A Ribosome-interacting GT 99.9 2.4E-25 8.2E-30 230.0 9.6 156 271-437 38-194 (376)
6 3iev_A GTP-binding protein ERA 99.8 8.2E-20 2.8E-24 184.2 17.8 165 307-483 11-185 (308)
7 2dyk_A GTP-binding protein; GT 99.8 5.5E-20 1.9E-24 164.7 11.6 158 307-478 2-160 (161)
8 2wji_A Ferrous iron transport 99.8 1.3E-19 4.6E-24 164.7 13.9 156 307-479 4-164 (165)
9 3tkl_A RAS-related protein RAB 99.8 1.5E-19 5.3E-24 167.5 14.6 160 306-482 16-181 (196)
10 3iby_A Ferrous iron transport 99.8 1.6E-20 5.6E-25 184.6 8.1 155 307-477 2-164 (256)
11 1wf3_A GTP-binding protein; GT 99.8 7E-20 2.4E-24 184.3 12.8 164 308-482 9-175 (301)
12 3tw8_B RAS-related protein RAB 99.8 7.7E-20 2.6E-24 166.6 11.4 160 306-483 9-174 (181)
13 2hxs_A RAB-26, RAS-related pro 99.8 1.8E-19 6.1E-24 164.2 13.5 161 307-482 7-175 (178)
14 1c1y_A RAS-related protein RAP 99.8 6.7E-19 2.3E-23 158.3 16.5 156 308-479 5-166 (167)
15 4dhe_A Probable GTP-binding pr 99.8 1.7E-19 5.9E-24 171.2 12.9 164 306-482 29-213 (223)
16 1g16_A RAS-related protein SEC 99.8 1.6E-19 5.5E-24 162.9 11.1 158 307-481 4-166 (170)
17 1wxq_A GTP-binding protein; st 99.8 4.8E-21 1.6E-25 199.8 0.8 164 308-472 2-262 (397)
18 3q85_A GTP-binding protein REM 99.8 7.4E-19 2.5E-23 158.8 15.1 159 307-480 3-167 (169)
19 2gj8_A MNME, tRNA modification 99.8 3.8E-20 1.3E-24 169.9 6.6 161 307-481 5-167 (172)
20 1wms_A RAB-9, RAB9, RAS-relate 99.8 9E-19 3.1E-23 159.4 15.6 161 307-481 8-175 (177)
21 4dsu_A GTPase KRAS, isoform 2B 99.8 5.1E-19 1.7E-23 162.6 14.0 157 308-481 6-167 (189)
22 2il1_A RAB12; G-protein, GDP, 99.8 4.4E-19 1.5E-23 165.2 13.5 157 307-479 27-189 (192)
23 3i8s_A Ferrous iron transport 99.8 8.1E-20 2.8E-24 181.2 8.9 159 307-481 4-170 (274)
24 1u8z_A RAS-related protein RAL 99.8 1.3E-18 4.5E-23 156.0 16.0 157 307-480 5-167 (168)
25 1zj6_A ADP-ribosylation factor 99.8 9.6E-19 3.3E-23 161.7 15.5 160 307-484 17-182 (187)
26 1jal_A YCHF protein; nucleotid 99.8 7.5E-19 2.6E-23 180.6 16.1 173 307-479 3-278 (363)
27 1upt_A ARL1, ADP-ribosylation 99.8 9.3E-19 3.2E-23 158.2 14.8 157 306-480 7-169 (171)
28 2y8e_A RAB-protein 6, GH09086P 99.8 8E-19 2.8E-23 159.6 14.5 157 307-480 15-177 (179)
29 3clv_A RAB5 protein, putative; 99.8 5.6E-19 1.9E-23 163.5 13.6 156 306-480 7-204 (208)
30 2erx_A GTP-binding protein DI- 99.8 1.2E-18 4E-23 157.2 15.3 159 307-481 4-168 (172)
31 2efe_B Small GTP-binding prote 99.8 1.3E-18 4.4E-23 159.0 15.7 159 307-482 13-177 (181)
32 1z2a_A RAS-related protein RAB 99.8 7.8E-19 2.7E-23 158.0 13.7 155 307-479 6-166 (168)
33 2q3h_A RAS homolog gene family 99.8 3.6E-19 1.2E-23 166.3 11.8 161 304-482 18-197 (201)
34 1ek0_A Protein (GTP-binding pr 99.8 8.7E-19 3E-23 157.7 13.9 155 308-479 5-168 (170)
35 4bas_A ADP-ribosylation factor 99.8 6.4E-19 2.2E-23 163.7 13.0 162 306-482 17-191 (199)
36 2fn4_A P23, RAS-related protei 99.8 5.8E-19 2E-23 160.8 12.4 161 307-484 10-176 (181)
37 1z0j_A RAB-22, RAS-related pro 99.8 1.9E-18 6.6E-23 155.7 15.7 156 307-479 7-168 (170)
38 2a9k_A RAS-related protein RAL 99.8 1.4E-18 4.8E-23 159.1 15.0 158 307-481 19-182 (187)
39 2lkc_A Translation initiation 99.8 3.9E-19 1.3E-23 162.0 11.1 158 306-483 8-174 (178)
40 1z08_A RAS-related protein RAB 99.8 6.5E-19 2.2E-23 159.1 12.5 157 307-480 7-169 (170)
41 1kao_A RAP2A; GTP-binding prot 99.8 1.8E-18 6E-23 155.0 15.2 156 308-480 5-166 (167)
42 3cph_A RAS-related protein SEC 99.8 4.4E-19 1.5E-23 166.8 11.7 159 305-480 19-182 (213)
43 1r8s_A ADP-ribosylation factor 99.8 9.8E-19 3.4E-23 157.2 13.5 155 308-480 2-162 (164)
44 1ky3_A GTP-binding protein YPT 99.8 1.1E-18 3.7E-23 159.2 14.0 160 307-480 9-178 (182)
45 2qu8_A Putative nucleolar GTP- 99.8 5.4E-19 1.8E-23 169.4 12.5 167 307-481 30-206 (228)
46 1z0f_A RAB14, member RAS oncog 99.8 2.2E-18 7.6E-23 156.6 15.9 156 307-479 16-177 (179)
47 2wjg_A FEOB, ferrous iron tran 99.8 6.3E-19 2.2E-23 162.5 12.4 158 307-482 8-171 (188)
48 1r2q_A RAS-related protein RAB 99.8 1.8E-18 6.2E-23 155.6 15.1 157 307-480 7-169 (170)
49 2g6b_A RAS-related protein RAB 99.8 1.1E-18 3.7E-23 159.3 13.7 159 307-482 11-176 (180)
50 3b1v_A Ferrous iron uptake tra 99.8 5.2E-19 1.8E-23 175.4 12.4 156 307-480 4-164 (272)
51 2bcg_Y Protein YP2, GTP-bindin 99.8 1.2E-18 4.1E-23 163.5 14.2 158 307-481 9-172 (206)
52 1x3s_A RAS-related protein RAB 99.8 6.7E-19 2.3E-23 162.8 12.2 160 307-482 16-180 (195)
53 2bov_A RAla, RAS-related prote 99.8 3.7E-18 1.3E-22 159.4 17.2 157 307-480 15-177 (206)
54 2ew1_A RAS-related protein RAB 99.8 7.1E-19 2.4E-23 166.0 12.3 160 306-482 26-191 (201)
55 3cbq_A GTP-binding protein REM 99.8 2.4E-18 8.1E-23 161.3 15.8 161 307-482 24-190 (195)
56 2fg5_A RAB-22B, RAS-related pr 99.8 1.5E-18 5E-23 161.5 14.2 158 307-483 24-189 (192)
57 2a5j_A RAS-related protein RAB 99.8 1.6E-18 5.4E-23 161.0 14.1 157 307-480 22-184 (191)
58 2gf9_A RAS-related protein RAB 99.8 1.3E-18 4.4E-23 161.1 13.4 157 307-480 23-185 (189)
59 2ce2_X GTPase HRAS; signaling 99.8 2.7E-18 9.2E-23 153.4 15.0 156 308-480 5-165 (166)
60 1m2o_B GTP-binding protein SAR 99.8 8.1E-19 2.8E-23 163.5 12.0 152 307-477 24-189 (190)
61 2h57_A ADP-ribosylation factor 99.8 7E-19 2.4E-23 163.0 11.5 160 306-481 21-188 (190)
62 3a1s_A Iron(II) transport prot 99.8 4.1E-19 1.4E-23 174.7 10.4 157 307-480 6-167 (258)
63 1mky_A Probable GTP-binding pr 99.8 1E-18 3.6E-23 184.5 14.1 161 307-481 2-167 (439)
64 2iwr_A Centaurin gamma 1; ANK 99.8 3.6E-18 1.2E-22 156.0 15.9 153 308-481 9-170 (178)
65 2fu5_C RAS-related protein RAB 99.8 3.8E-19 1.3E-23 163.2 9.4 157 307-480 9-171 (183)
66 2p5s_A RAS and EF-hand domain 99.8 2.3E-18 7.7E-23 161.1 14.5 159 305-480 27-197 (199)
67 1zd9_A ADP-ribosylation factor 99.8 1.8E-18 6E-23 160.4 13.6 159 306-481 22-186 (188)
68 2hup_A RAS-related protein RAB 99.8 2.2E-18 7.4E-23 162.0 14.4 161 306-483 29-196 (201)
69 1vg8_A RAS-related protein RAB 99.8 1.6E-18 5.3E-23 162.3 13.3 161 307-481 9-176 (207)
70 1ksh_A ARF-like protein 2; sma 99.8 1.1E-18 3.7E-23 160.8 12.0 158 306-481 18-181 (186)
71 1zbd_A Rabphilin-3A; G protein 99.8 2.6E-18 8.9E-23 160.7 14.8 157 307-480 9-171 (203)
72 2dby_A GTP-binding protein; GD 99.8 1.5E-18 5E-23 179.1 14.2 89 307-395 2-111 (368)
73 2h17_A ADP-ribosylation factor 99.8 1.2E-18 4.2E-23 160.3 12.0 154 306-477 21-180 (181)
74 3q72_A GTP-binding protein RAD 99.8 5.3E-19 1.8E-23 159.2 9.3 155 307-480 3-164 (166)
75 3dz8_A RAS-related protein RAB 99.8 1E-18 3.5E-23 162.2 11.5 161 304-481 21-187 (191)
76 2bme_A RAB4A, RAS-related prot 99.8 1.6E-18 5.5E-23 159.2 12.7 157 307-480 11-173 (186)
77 1f6b_A SAR1; gtpases, N-termin 99.8 8.7E-19 3E-23 164.5 11.0 153 308-478 27-197 (198)
78 3t5g_A GTP-binding protein RHE 99.8 1.5E-18 5.1E-23 159.0 12.2 159 307-482 7-171 (181)
79 2oil_A CATX-8, RAS-related pro 99.8 3.2E-18 1.1E-22 158.7 14.4 158 306-480 25-188 (193)
80 3bc1_A RAS-related protein RAB 99.8 3.5E-18 1.2E-22 157.2 14.4 159 307-481 12-186 (195)
81 3kkq_A RAS-related protein M-R 99.8 8.7E-18 3E-22 154.1 17.0 157 307-480 19-182 (183)
82 2e87_A Hypothetical protein PH 99.8 4.3E-18 1.5E-22 175.0 16.4 168 305-481 166-337 (357)
83 2b6h_A ADP-ribosylation factor 99.8 3.3E-18 1.1E-22 159.6 14.1 155 307-479 30-190 (192)
84 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.1E-18 7.3E-23 158.0 12.5 157 308-482 7-182 (186)
85 3reg_A RHO-like small GTPase; 99.8 3.2E-18 1.1E-22 159.1 13.7 159 307-483 24-191 (194)
86 1fzq_A ADP-ribosylation factor 99.8 2.9E-18 9.8E-23 158.4 13.2 155 307-480 17-178 (181)
87 2gf0_A GTP-binding protein DI- 99.8 2.2E-18 7.5E-23 160.0 12.5 160 307-482 9-173 (199)
88 1z06_A RAS-related protein RAB 99.8 3.9E-18 1.3E-22 157.9 13.9 157 307-479 21-187 (189)
89 1moz_A ARL1, ADP-ribosylation 99.8 8.8E-19 3E-23 160.6 9.4 156 307-480 19-180 (183)
90 3pqc_A Probable GTP-binding pr 99.8 5.6E-18 1.9E-22 156.4 14.5 160 305-480 22-194 (195)
91 2atx_A Small GTP binding prote 99.8 5.3E-18 1.8E-22 157.4 14.2 155 307-479 19-192 (194)
92 3con_A GTPase NRAS; structural 99.8 5.9E-18 2E-22 156.4 14.5 159 307-482 22-185 (190)
93 2o52_A RAS-related protein RAB 99.8 2.9E-18 1E-22 160.8 12.4 159 306-481 25-189 (200)
94 2nzj_A GTP-binding protein REM 99.8 5.6E-18 1.9E-22 153.6 13.5 160 307-481 5-170 (175)
95 3bwd_D RAC-like GTP-binding pr 99.8 2E-18 6.7E-23 157.9 10.2 156 306-479 8-180 (182)
96 3cpj_B GTP-binding protein YPT 99.8 3.8E-18 1.3E-22 162.8 12.5 159 307-482 14-178 (223)
97 3k53_A Ferrous iron transport 99.8 3.4E-18 1.2E-22 168.8 12.6 159 307-482 4-168 (271)
98 2f7s_A C25KG, RAS-related prot 99.8 1.1E-17 3.6E-22 158.3 15.5 158 307-480 26-199 (217)
99 3gee_A MNME, tRNA modification 99.8 8.4E-19 2.9E-23 186.8 8.7 164 304-479 231-397 (476)
100 1svi_A GTP-binding protein YSX 99.8 5.8E-18 2E-22 156.9 13.3 158 306-479 23-194 (195)
101 3t1o_A Gliding protein MGLA; G 99.8 3.9E-18 1.3E-22 157.6 12.0 163 307-481 15-193 (198)
102 2x77_A ADP-ribosylation factor 99.8 2.1E-18 7.1E-23 159.5 10.0 158 307-482 23-186 (189)
103 2j0v_A RAC-like GTP-binding pr 99.8 3.3E-18 1.1E-22 161.2 11.5 158 307-482 10-182 (212)
104 4dcu_A GTP-binding protein ENG 99.7 5.1E-18 1.8E-22 180.0 14.1 165 305-482 194-371 (456)
105 1ega_A Protein (GTP-binding pr 99.7 2.4E-18 8.1E-23 173.0 10.8 162 307-482 9-177 (301)
106 2j1l_A RHO-related GTP-binding 99.7 5.6E-18 1.9E-22 160.7 12.9 158 307-482 35-211 (214)
107 3lxw_A GTPase IMAP family memb 99.7 7.3E-18 2.5E-22 164.6 13.9 166 307-482 22-210 (247)
108 4dkx_A RAS-related protein RAB 99.7 1.3E-17 4.5E-22 159.8 15.3 155 308-480 15-176 (216)
109 2fv8_A H6, RHO-related GTP-bin 99.7 4.1E-18 1.4E-22 160.5 11.6 157 307-481 26-201 (207)
110 3oes_A GTPase rhebl1; small GT 99.7 3.2E-18 1.1E-22 160.3 10.5 162 306-484 24-191 (201)
111 2atv_A RERG, RAS-like estrogen 99.7 1.6E-17 5.5E-22 154.8 15.1 157 307-481 29-192 (196)
112 3lvq_E ARF-GAP with SH3 domain 99.7 4.4E-18 1.5E-22 182.0 12.5 162 306-486 322-490 (497)
113 4gzl_A RAS-related C3 botulinu 99.7 4.1E-18 1.4E-22 160.5 10.7 155 306-478 30-203 (204)
114 2gco_A H9, RHO-related GTP-bin 99.7 1.1E-17 3.8E-22 156.8 13.4 155 307-479 26-199 (201)
115 2hjg_A GTP-binding protein ENG 99.7 9.2E-18 3.2E-22 177.0 14.4 163 306-481 175-350 (436)
116 4djt_A GTP-binding nuclear pro 99.7 3.6E-18 1.2E-22 161.7 10.1 160 307-483 12-178 (218)
117 3ihw_A Centg3; RAS, centaurin, 99.7 3.2E-17 1.1E-21 151.9 16.3 152 308-481 22-181 (184)
118 1mky_A Probable GTP-binding pr 99.7 2.7E-17 9.4E-22 173.6 16.0 164 306-482 180-357 (439)
119 3c5c_A RAS-like protein 12; GD 99.7 2.2E-17 7.4E-22 153.2 13.3 156 307-479 22-185 (187)
120 2hjg_A GTP-binding protein ENG 99.7 3.4E-18 1.1E-22 180.4 8.3 161 307-481 4-166 (436)
121 3l0i_B RAS-related protein RAB 99.7 1.6E-19 5.5E-24 169.0 -2.1 157 307-480 34-196 (199)
122 1m7b_A RND3/RHOE small GTP-bin 99.7 1.5E-17 5.3E-22 153.3 10.7 155 307-479 8-182 (184)
123 3geh_A MNME, tRNA modification 99.7 2E-18 6.8E-23 183.3 5.3 163 304-482 222-386 (462)
124 2yc2_C IFT27, small RAB-relate 99.7 4.3E-18 1.5E-22 159.0 6.6 160 307-481 21-193 (208)
125 3q3j_B RHO-related GTP-binding 99.7 2.4E-17 8.3E-22 156.6 11.8 157 307-482 28-205 (214)
126 3o47_A ADP-ribosylation factor 99.7 3.3E-17 1.1E-21 166.6 13.3 157 307-481 166-328 (329)
127 1gwn_A RHO-related GTP-binding 99.7 2E-17 7E-22 156.3 10.1 155 307-479 29-203 (205)
128 3llu_A RAS-related GTP-binding 99.7 1.4E-16 4.9E-21 148.6 15.6 157 306-478 20-195 (196)
129 2fh5_B SR-beta, signal recogni 99.7 3.9E-17 1.3E-21 154.1 11.9 156 307-478 8-214 (214)
130 2cxx_A Probable GTP-binding pr 99.7 8.3E-17 2.8E-21 148.0 13.6 165 307-483 2-187 (190)
131 3lxx_A GTPase IMAP family memb 99.7 7.4E-17 2.5E-21 155.9 13.6 165 306-481 29-215 (239)
132 2cjw_A GTP-binding protein GEM 99.7 7.8E-17 2.7E-21 150.5 13.1 159 307-480 7-172 (192)
133 3r7w_A Gtpase1, GTP-binding pr 99.7 1.2E-16 4.2E-21 160.8 14.4 162 307-478 4-179 (307)
134 3gj0_A GTP-binding nuclear pro 99.7 1.4E-17 4.8E-22 158.3 6.9 158 307-482 16-177 (221)
135 2g3y_A GTP-binding protein GEM 99.7 1.1E-16 3.6E-21 152.8 12.9 157 307-480 38-203 (211)
136 4dcu_A GTP-binding protein ENG 99.7 2.6E-17 8.8E-22 174.6 8.8 162 306-481 23-186 (456)
137 3qq5_A Small GTP-binding prote 99.7 2.1E-17 7.2E-22 173.5 6.6 159 307-481 35-197 (423)
138 3sjy_A Translation initiation 99.7 3E-16 1E-20 163.9 14.8 159 306-482 8-194 (403)
139 1wb1_A Translation elongation 99.7 2.7E-16 9.2E-21 167.9 14.7 153 307-479 20-188 (482)
140 3th5_A RAS-related C3 botulinu 99.5 3.5E-18 1.2E-22 160.3 0.0 155 306-478 30-203 (204)
141 2zej_A Dardarin, leucine-rich 99.7 2.6E-16 9.1E-21 145.3 12.6 159 308-482 4-180 (184)
142 2f9l_A RAB11B, member RAS onco 99.7 1.8E-16 6.1E-21 148.3 11.3 157 307-480 6-168 (199)
143 2wkq_A NPH1-1, RAS-related C3 99.7 1.8E-16 6.1E-21 159.2 11.5 158 305-480 154-330 (332)
144 3dpu_A RAB family protein; roc 99.7 1.2E-16 4.2E-21 172.7 9.7 157 307-483 42-211 (535)
145 2xtp_A GTPase IMAP family memb 99.7 2.1E-16 7E-21 154.5 10.3 168 306-482 22-210 (260)
146 1ni3_A YCHF GTPase, YCHF GTP-b 99.7 1.5E-15 5E-20 157.8 17.0 92 304-395 18-127 (392)
147 1oix_A RAS-related protein RAB 99.6 3.7E-16 1.3E-20 145.6 10.7 156 306-478 29-190 (191)
148 3t5d_A Septin-7; GTP-binding p 99.6 6.4E-16 2.2E-20 152.8 12.5 160 307-479 9-203 (274)
149 3tr5_A RF-3, peptide chain rel 99.6 6.5E-16 2.2E-20 166.6 11.6 125 305-449 12-160 (528)
150 3j2k_7 ERF3, eukaryotic polype 99.6 2.1E-15 7.3E-20 159.2 14.7 154 306-472 17-217 (439)
151 1kk1_A EIF2gamma; initiation o 99.6 2.3E-15 7.9E-20 157.4 14.3 157 307-481 11-201 (410)
152 2elf_A Protein translation elo 99.6 3.3E-15 1.1E-19 154.4 13.9 143 308-480 23-180 (370)
153 2c78_A Elongation factor TU-A; 99.6 3.3E-15 1.1E-19 155.9 13.5 155 307-481 12-213 (405)
154 1s0u_A EIF-2-gamma, translatio 99.6 3.1E-15 1E-19 156.4 12.9 158 306-481 8-199 (408)
155 2ohf_A Protein OLA1, GTP-bindi 99.6 2.4E-15 8.2E-20 156.0 11.3 116 304-419 20-155 (396)
156 3c5h_A Glucocorticoid receptor 99.6 3E-15 1E-19 146.5 11.1 166 307-479 20-254 (255)
157 3izy_P Translation initiation 99.6 1E-16 3.5E-21 172.6 0.6 156 305-480 3-168 (537)
158 1jwy_B Dynamin A GTPase domain 99.6 4.5E-15 1.5E-19 148.8 11.1 167 305-482 23-264 (315)
159 3p26_A Elongation factor 1 alp 99.6 2.2E-15 7.6E-20 160.9 9.4 151 307-469 34-227 (483)
160 2ywe_A GTP-binding protein LEP 99.6 1.1E-14 3.9E-19 158.6 14.6 158 305-482 5-186 (600)
161 3cb4_D GTP-binding protein LEP 99.6 1.6E-14 5.5E-19 157.6 15.4 157 306-482 4-184 (599)
162 2aka_B Dynamin-1; fusion prote 99.6 5.7E-16 1.9E-20 153.9 2.8 161 305-477 25-250 (299)
163 1d2e_A Elongation factor TU (E 99.6 1.1E-14 3.9E-19 151.6 12.0 155 307-481 4-196 (397)
164 2www_A Methylmalonic aciduria 99.5 1.8E-14 6E-19 147.8 12.4 148 306-480 74-279 (349)
165 1pui_A ENGB, probable GTP-bind 99.5 1.3E-14 4.4E-19 136.1 10.3 165 302-482 22-201 (210)
166 3izq_1 HBS1P, elongation facto 99.5 7.3E-15 2.5E-19 161.0 9.2 155 304-470 165-362 (611)
167 1zun_B Sulfate adenylate trans 99.5 2.8E-14 9.5E-19 150.3 12.8 144 307-469 25-213 (434)
168 3mca_A HBS1, elongation factor 99.5 2.8E-15 9.7E-20 163.8 3.0 162 305-479 176-396 (592)
169 1nrj_B SR-beta, signal recogni 99.5 5.7E-14 1.9E-18 132.6 11.3 142 306-466 12-170 (218)
170 2j69_A Bacterial dynamin-like 99.5 3.3E-14 1.1E-18 158.1 9.9 159 306-480 69-325 (695)
171 1zo1_I IF2, translation initia 99.5 1.2E-15 4E-20 163.1 -1.8 152 306-477 4-164 (501)
172 2xex_A Elongation factor G; GT 99.5 2.9E-13 1E-17 150.5 15.9 124 306-449 10-153 (693)
173 1dar_A EF-G, elongation factor 99.5 2.9E-13 9.8E-18 150.5 15.8 124 306-449 12-155 (691)
174 3def_A T7I23.11 protein; chlor 99.5 2.2E-13 7.6E-18 133.6 12.5 120 308-438 38-164 (262)
175 3p32_A Probable GTPase RV1496/ 99.5 1E-13 3.4E-18 142.3 10.4 103 351-480 170-284 (355)
176 2dy1_A Elongation factor G; tr 99.5 3.9E-13 1.3E-17 148.8 15.5 127 303-449 6-151 (665)
177 1g7s_A Translation initiation 99.5 8.9E-14 3E-18 151.8 10.1 153 306-480 5-218 (594)
178 1jny_A EF-1-alpha, elongation 99.5 7.3E-14 2.5E-18 147.2 9.1 145 307-470 7-203 (435)
179 2h5e_A Peptide chain release f 99.5 4.4E-13 1.5E-17 144.5 14.9 115 306-440 13-149 (529)
180 1f60_A Elongation factor EEF1A 99.5 6E-14 2.1E-18 148.8 7.9 150 307-469 8-201 (458)
181 1h65_A Chloroplast outer envel 99.5 1E-12 3.5E-17 129.4 16.2 123 307-440 40-169 (270)
182 3avx_A Elongation factor TS, e 99.4 2.2E-13 7.5E-18 155.9 11.3 155 306-480 296-486 (1289)
183 2qm8_A GTPase/ATPase; G protei 99.4 1.2E-13 4.1E-18 140.9 7.6 151 302-479 51-260 (337)
184 2rdo_7 EF-G, elongation factor 99.4 2E-12 6.7E-17 144.0 17.7 116 305-440 9-149 (704)
185 2qag_A Septin-2, protein NEDD5 99.4 3.3E-13 1.1E-17 138.9 10.5 157 308-479 39-232 (361)
186 2ged_A SR-beta, signal recogni 99.4 4.9E-13 1.7E-17 123.4 10.4 122 305-440 47-171 (193)
187 1r5b_A Eukaryotic peptide chai 99.4 9.3E-14 3.2E-18 147.7 6.2 152 307-471 44-243 (467)
188 2p67_A LAO/AO transport system 99.4 1.5E-13 5.1E-18 140.3 6.8 149 304-479 54-260 (341)
189 3zvr_A Dynamin-1; hydrolase, D 99.4 1.7E-13 5.8E-18 152.4 6.7 160 305-476 50-274 (772)
190 2x2e_A Dynamin-1; nitration, h 99.4 6.5E-14 2.2E-18 143.5 2.6 159 306-476 31-254 (353)
191 3t34_A Dynamin-related protein 99.4 2.7E-13 9.1E-18 139.2 7.1 158 305-473 33-254 (360)
192 3vqt_A RF-3, peptide chain rel 99.4 2.6E-12 9E-17 139.0 14.7 124 306-449 31-178 (548)
193 3r7w_B Gtpase2, GTP-binding pr 99.4 2E-12 6.9E-17 130.8 11.9 159 308-480 1-174 (331)
194 2qpt_A EH domain-containing pr 99.3 6.9E-12 2.4E-16 135.8 12.2 128 305-444 64-237 (550)
195 2wsm_A Hydrogenase expression/ 99.3 5.9E-12 2E-16 119.1 9.7 151 305-482 29-216 (221)
196 1yrb_A ATP(GTP)binding protein 99.3 3.1E-12 1.1E-16 124.4 7.9 119 353-481 109-258 (262)
197 3j25_A Tetracycline resistance 99.2 1E-11 3.4E-16 136.9 9.5 157 306-482 2-241 (638)
198 2qnr_A Septin-2, protein NEDD5 99.2 5.1E-11 1.7E-15 119.5 10.8 161 308-482 20-216 (301)
199 2hf9_A Probable hydrogenase ni 99.1 1.5E-10 5E-15 109.8 10.8 56 425-480 164-224 (226)
200 1n0u_A EF-2, elongation factor 99.1 6.7E-11 2.3E-15 134.1 9.2 113 306-438 19-163 (842)
201 4fn5_A EF-G 1, elongation fact 99.1 1E-09 3.6E-14 122.3 16.3 116 304-439 11-151 (709)
202 2qag_C Septin-7; cell cycle, c 99.1 2.9E-10 9.8E-15 119.0 10.1 157 308-479 33-226 (418)
203 3ec1_A YQEH GTPase; atnos1, at 99.1 4.4E-11 1.5E-15 123.4 3.1 144 308-468 164-319 (369)
204 1tq4_A IIGP1, interferon-induc 99.0 2.7E-10 9.2E-15 119.0 7.9 156 308-485 71-258 (413)
205 3h2y_A GTPase family protein; 98.9 1.6E-10 5.4E-15 119.2 1.3 140 307-463 161-313 (368)
206 2pcj_A ABC transporter, lipopr 98.8 1.8E-08 6E-13 96.6 10.4 149 297-461 21-198 (224)
207 2qag_B Septin-6, protein NEDD5 98.8 6.2E-09 2.1E-13 108.9 6.9 148 299-461 33-217 (427)
208 1sgw_A Putative ABC transporte 98.8 1.5E-08 5E-13 96.7 9.0 149 296-461 25-191 (214)
209 2j37_W Signal recognition part 98.8 5.3E-09 1.8E-13 111.8 5.9 152 306-477 101-310 (504)
210 3tif_A Uncharacterized ABC tra 98.7 1.7E-08 5.7E-13 97.5 8.3 149 297-461 22-204 (235)
211 3tui_C Methionine import ATP-b 98.7 4.3E-08 1.5E-12 100.6 11.3 149 297-461 45-222 (366)
212 2onk_A Molybdate/tungstate ABC 98.7 2E-08 6.9E-13 97.3 8.0 149 296-461 15-185 (240)
213 1vpl_A ABC transporter, ATP-bi 98.7 3.1E-08 1.1E-12 96.9 9.3 149 297-461 32-204 (256)
214 2olj_A Amino acid ABC transpor 98.7 1.7E-08 5.9E-13 99.2 7.5 149 297-461 41-217 (263)
215 1ji0_A ABC transporter; ATP bi 98.7 4.8E-08 1.6E-12 94.6 10.4 149 297-461 23-197 (240)
216 1b0u_A Histidine permease; ABC 98.7 3.4E-08 1.2E-12 97.0 7.9 45 297-352 23-67 (262)
217 3sop_A Neuronal-specific septi 98.7 8.8E-08 3E-12 94.4 10.9 123 308-443 4-158 (270)
218 3gfo_A Cobalt import ATP-bindi 98.6 5.6E-08 1.9E-12 96.1 9.1 150 296-461 24-202 (275)
219 2nq2_C Hypothetical ABC transp 98.6 5.5E-08 1.9E-12 95.0 8.8 149 297-461 22-187 (253)
220 3d31_A Sulfate/molybdate ABC t 98.6 7.3E-08 2.5E-12 98.4 9.7 150 295-461 15-186 (348)
221 3fvq_A Fe(3+) IONS import ATP- 98.6 5.7E-08 2E-12 99.5 8.6 149 297-461 21-197 (359)
222 1z47_A CYSA, putative ABC-tran 98.6 6.1E-08 2.1E-12 99.2 8.5 150 296-461 31-204 (355)
223 4g1u_C Hemin import ATP-bindin 98.6 5.2E-08 1.8E-12 95.9 7.7 149 297-461 28-206 (266)
224 2it1_A 362AA long hypothetical 98.6 1E-07 3.5E-12 97.8 10.0 149 297-461 20-192 (362)
225 1cip_A Protein (guanine nucleo 98.6 4E-08 1.4E-12 100.6 6.9 133 340-480 180-344 (353)
226 1g6h_A High-affinity branched- 98.6 2.9E-08 9.9E-13 97.1 5.0 45 297-352 24-68 (257)
227 1oxx_K GLCV, glucose, ABC tran 98.6 1.3E-07 4.4E-12 96.8 9.3 149 297-461 22-199 (353)
228 2qi9_C Vitamin B12 import ATP- 98.6 4E-08 1.4E-12 95.7 5.2 45 296-352 16-60 (249)
229 2yyz_A Sugar ABC transporter, 98.5 1.1E-07 3.8E-12 97.4 8.3 149 297-461 20-192 (359)
230 3rlf_A Maltose/maltodextrin im 98.5 9.1E-08 3.1E-12 98.7 7.7 149 297-461 20-192 (381)
231 2yz2_A Putative ABC transporte 98.5 6.2E-08 2.1E-12 95.2 5.8 149 297-461 24-196 (266)
232 1g29_1 MALK, maltose transport 98.5 2E-07 6.9E-12 96.0 9.0 149 297-461 20-198 (372)
233 1mv5_A LMRA, multidrug resista 98.5 1.7E-07 5.9E-12 90.8 7.3 34 296-329 18-51 (243)
234 1v43_A Sugar-binding transport 98.5 1.5E-07 5E-12 97.0 7.1 149 297-461 28-200 (372)
235 1zcb_A G alpha I/13; GTP-bindi 98.5 1.2E-07 4E-12 97.4 6.2 128 345-480 193-353 (362)
236 2ixe_A Antigen peptide transpo 98.5 4.1E-07 1.4E-11 89.7 9.7 149 297-461 36-215 (271)
237 2ihy_A ABC transporter, ATP-bi 98.5 1.4E-07 4.6E-12 93.5 6.2 45 297-352 38-82 (279)
238 2ff7_A Alpha-hemolysin translo 98.5 6.8E-07 2.3E-11 86.8 11.0 148 297-461 26-202 (247)
239 2pjz_A Hypothetical protein ST 98.5 1.3E-07 4.5E-12 92.8 5.8 143 297-461 22-183 (263)
240 1puj_A YLQF, conserved hypothe 98.4 1.3E-07 4.5E-12 93.8 5.6 58 306-366 120-178 (282)
241 1u0l_A Probable GTPase ENGC; p 98.4 3.8E-07 1.3E-11 91.1 8.4 103 353-475 63-168 (301)
242 2d2e_A SUFC protein; ABC-ATPas 98.4 4.6E-07 1.6E-11 88.2 8.3 151 297-461 20-201 (250)
243 2pze_A Cystic fibrosis transme 98.4 1.2E-07 4E-12 91.2 3.8 58 296-364 24-81 (229)
244 2zu0_C Probable ATP-dependent 98.4 8.7E-07 3E-11 87.1 9.9 151 297-461 37-222 (267)
245 3nh6_A ATP-binding cassette SU 98.4 1E-07 3.4E-12 95.7 2.9 150 296-461 70-247 (306)
246 1f5n_A Interferon-induced guan 98.4 4.6E-07 1.6E-11 98.5 7.9 60 306-366 38-104 (592)
247 2cbz_A Multidrug resistance-as 98.4 6.1E-07 2.1E-11 86.6 7.9 47 296-353 21-67 (237)
248 3dm5_A SRP54, signal recogniti 98.4 8.5E-07 2.9E-11 93.1 9.4 143 306-469 100-280 (443)
249 2v3c_C SRP54, signal recogniti 98.3 2.9E-07 1E-11 96.6 4.9 153 306-479 99-310 (432)
250 4fid_A G protein alpha subunit 98.3 3.6E-07 1.2E-11 92.9 5.3 133 340-480 148-328 (340)
251 1azs_C GS-alpha; complex (lyas 98.3 6.3E-07 2.2E-11 93.1 7.0 127 346-480 210-385 (402)
252 2xtz_A Guanine nucleotide-bind 98.3 4.5E-07 1.6E-11 92.8 5.4 121 352-480 182-345 (354)
253 3szr_A Interferon-induced GTP- 98.3 1.7E-06 6E-11 94.6 10.1 24 307-330 46-69 (608)
254 1puj_A YLQF, conserved hypothe 98.3 1.6E-06 5.5E-11 85.9 8.3 102 357-480 3-106 (282)
255 3ohm_A Guanine nucleotide-bind 98.3 8.8E-07 3E-11 89.6 6.5 130 344-481 158-319 (327)
256 2yhs_A FTSY, cell division pro 98.3 7.6E-07 2.6E-11 94.5 6.2 33 297-329 284-316 (503)
257 2ghi_A Transport protein; mult 98.2 2.3E-06 7.8E-11 83.7 8.8 33 297-329 37-69 (260)
258 2bbs_A Cystic fibrosis transme 98.2 3.2E-07 1.1E-11 91.4 2.1 57 296-363 54-110 (290)
259 3kl4_A SRP54, signal recogniti 98.2 1.8E-06 6.2E-11 90.5 7.6 144 306-468 97-278 (433)
260 3e70_C DPA, signal recognition 98.2 1.5E-06 5.1E-11 88.0 6.4 144 305-470 128-310 (328)
261 3gd7_A Fusion complex of cysti 98.2 7.2E-07 2.5E-11 92.4 3.7 34 296-329 37-70 (390)
262 3cnl_A YLQF, putative uncharac 98.2 1.2E-06 4E-11 85.9 4.8 57 307-366 100-157 (262)
263 2yv5_A YJEQ protein; hydrolase 98.1 4.7E-06 1.6E-10 83.2 8.6 85 380-475 76-164 (302)
264 3b5x_A Lipid A export ATP-bind 98.1 3.3E-06 1.1E-10 91.9 7.8 45 297-352 360-404 (582)
265 4f4c_A Multidrug resistance pr 98.1 9.3E-07 3.2E-11 104.8 3.4 150 297-462 1096-1275(1321)
266 4a82_A Cystic fibrosis transme 98.1 2.2E-06 7.6E-11 93.2 5.7 150 296-461 357-534 (578)
267 3qf4_A ABC transporter, ATP-bi 98.1 2.6E-06 8.9E-11 92.8 6.2 150 296-461 359-536 (587)
268 3bk7_A ABC transporter ATP-bin 98.1 4.1E-06 1.4E-10 91.6 7.3 144 301-461 377-530 (607)
269 1rj9_A FTSY, signal recognitio 98.1 9.5E-06 3.3E-10 81.2 9.3 24 306-329 102-125 (304)
270 1yqt_A RNAse L inhibitor; ATP- 98.0 3.7E-06 1.3E-10 90.7 6.0 143 301-461 307-460 (538)
271 2yl4_A ATP-binding cassette SU 98.0 7.6E-06 2.6E-10 89.2 8.4 149 297-461 361-540 (595)
272 3b60_A Lipid A export ATP-bind 98.0 2.7E-06 9.3E-11 92.6 4.7 149 296-461 359-537 (582)
273 3l82_B F-box only protein 4; T 98.0 9.6E-06 3.3E-10 76.7 7.3 102 373-482 115-225 (227)
274 3ozx_A RNAse L inhibitor; ATP 98.0 8.9E-06 3E-10 87.7 8.0 141 300-461 288-444 (538)
275 1j8m_F SRP54, signal recogniti 98.0 1.1E-05 3.8E-10 80.4 8.2 145 306-470 98-281 (297)
276 3qf4_B Uncharacterized ABC tra 98.0 1.8E-06 6.2E-11 94.3 1.9 45 297-352 372-416 (598)
277 3h2y_A GTPase family protein; 98.0 1.4E-05 4.7E-10 82.1 8.4 90 375-479 60-159 (368)
278 3ec1_A YQEH GTPase; atnos1, at 97.9 1E-05 3.6E-10 83.0 7.1 90 375-479 62-161 (369)
279 1nij_A Hypothetical protein YJ 97.8 1.2E-05 4.1E-10 80.8 5.5 25 305-329 3-27 (318)
280 3cnl_A YLQF, putative uncharac 97.8 1.4E-05 4.9E-10 78.1 4.4 86 373-477 11-98 (262)
281 3l2o_B F-box only protein 4; s 97.8 5E-05 1.7E-09 75.1 8.0 106 372-482 199-310 (312)
282 3g5u_A MCG1178, multidrug resi 97.8 1.3E-05 4.5E-10 94.8 4.6 150 296-461 406-583 (1284)
283 1vma_A Cell division protein F 97.8 4.1E-05 1.4E-09 76.7 7.6 28 302-329 100-127 (306)
284 3g5u_A MCG1178, multidrug resi 97.8 1.2E-05 4E-10 95.1 4.2 150 297-462 1050-1229(1284)
285 4f4c_A Multidrug resistance pr 97.7 2.5E-05 8.7E-10 92.6 6.5 150 296-461 434-611 (1321)
286 3q5d_A Atlastin-1; G protein, 97.7 2.3E-05 8E-10 82.3 5.1 60 306-365 67-152 (447)
287 3j16_B RLI1P; ribosome recycli 97.7 3.9E-05 1.3E-09 83.8 6.9 151 298-461 365-526 (608)
288 3ozx_A RNAse L inhibitor; ATP 97.6 2.5E-05 8.6E-10 84.2 4.5 53 404-461 139-195 (538)
289 1zu4_A FTSY; GTPase, signal re 97.6 0.00013 4.6E-09 73.3 9.1 30 299-328 98-127 (320)
290 3j16_B RLI1P; ribosome recycli 97.6 1.6E-05 5.3E-10 86.9 1.7 28 302-329 99-126 (608)
291 1yqt_A RNAse L inhibitor; ATP- 97.6 2.9E-05 1E-09 83.6 3.8 29 302-330 43-71 (538)
292 1htw_A HI0065; nucleotide-bind 97.6 1.3E-05 4.5E-10 72.5 0.5 32 299-330 26-57 (158)
293 3bk7_A ABC transporter ATP-bin 97.4 3.2E-05 1.1E-09 84.5 1.8 28 302-329 113-140 (607)
294 3ney_A 55 kDa erythrocyte memb 97.4 4.9E-05 1.7E-09 71.2 2.7 57 305-363 18-76 (197)
295 3b9q_A Chloroplast SRP recepto 97.4 0.00056 1.9E-08 68.2 10.3 31 299-329 93-123 (302)
296 2px0_A Flagellar biosynthesis 97.4 4.4E-05 1.5E-09 76.0 2.2 24 305-328 104-127 (296)
297 1t9h_A YLOQ, probable GTPase E 97.4 4.6E-05 1.6E-09 76.3 1.6 56 306-365 173-236 (307)
298 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.00014 4.6E-09 73.6 4.9 44 298-352 163-206 (330)
299 2og2_A Putative signal recogni 97.3 0.0011 3.9E-08 67.6 11.6 32 298-329 149-180 (359)
300 2ffh_A Protein (FFH); SRP54, s 97.3 0.00041 1.4E-08 72.5 8.2 24 305-328 97-120 (425)
301 2xxa_A Signal recognition part 97.3 0.0006 2E-08 71.4 9.4 23 305-327 99-121 (433)
302 1ls1_A Signal recognition part 97.3 0.00023 8E-09 70.7 5.6 25 305-329 97-121 (295)
303 1z6g_A Guanylate kinase; struc 97.2 0.00012 4.2E-09 69.2 2.9 34 297-330 14-47 (218)
304 2rcn_A Probable GTPase ENGC; Y 97.2 0.00016 5.6E-09 73.8 4.0 56 307-365 216-280 (358)
305 4gp7_A Metallophosphoesterase; 97.2 0.00022 7.5E-09 64.7 4.3 30 299-328 2-31 (171)
306 1u0l_A Probable GTPase ENGC; p 97.2 0.00022 7.7E-09 70.9 4.2 57 306-365 169-233 (301)
307 1t9h_A YLOQ, probable GTPase E 97.2 0.00024 8.2E-09 71.1 4.4 82 381-473 84-170 (307)
308 3ux8_A Excinuclease ABC, A sub 97.2 0.00065 2.2E-08 75.0 8.3 27 297-323 35-61 (670)
309 2yv5_A YJEQ protein; hydrolase 97.1 0.00047 1.6E-08 68.6 6.0 54 307-364 166-227 (302)
310 3lnc_A Guanylate kinase, GMP k 97.1 0.00018 6.2E-09 68.2 2.5 33 298-330 19-52 (231)
311 1kgd_A CASK, peripheral plasma 97.1 0.00031 1.1E-08 64.1 3.8 41 307-347 6-48 (180)
312 1lvg_A Guanylate kinase, GMP k 97.1 0.00018 6.2E-09 66.9 2.1 25 305-329 3-27 (198)
313 2iw3_A Elongation factor 3A; a 97.0 0.00045 1.6E-08 78.9 5.3 45 296-351 689-733 (986)
314 3tr0_A Guanylate kinase, GMP k 97.0 0.00029 1E-08 64.9 3.1 29 302-330 3-31 (205)
315 3euj_A Chromosome partition pr 97.0 0.00026 9.1E-09 75.0 2.7 32 297-329 21-52 (483)
316 1znw_A Guanylate kinase, GMP k 96.9 0.00035 1.2E-08 65.2 3.1 29 302-330 16-44 (207)
317 3a00_A Guanylate kinase, GMP k 96.9 0.00033 1.1E-08 64.2 2.5 40 308-347 3-44 (186)
318 2rcn_A Probable GTPase ENGC; Y 96.9 0.0032 1.1E-07 64.2 9.9 82 381-474 128-213 (358)
319 1s96_A Guanylate kinase, GMP k 96.9 0.00042 1.4E-08 65.8 2.8 29 303-331 13-41 (219)
320 2jeo_A Uridine-cytidine kinase 96.8 0.00056 1.9E-08 65.5 3.0 33 297-329 16-48 (245)
321 2gza_A Type IV secretion syste 96.8 0.00029 9.8E-09 72.0 0.9 44 298-352 167-210 (361)
322 1zp6_A Hypothetical protein AT 96.7 0.001 3.5E-08 60.6 4.1 26 304-329 7-32 (191)
323 3c8u_A Fructokinase; YP_612366 96.6 0.00069 2.3E-08 63.2 2.5 24 306-329 22-45 (208)
324 2f1r_A Molybdopterin-guanine d 96.6 0.00043 1.5E-08 63.3 1.0 39 307-356 3-44 (171)
325 2v9p_A Replication protein E1; 96.6 0.00041 1.4E-08 69.3 0.7 32 298-329 118-149 (305)
326 1ye8_A Protein THEP1, hypothet 96.6 0.00091 3.1E-08 61.3 2.9 22 308-329 2-23 (178)
327 3tau_A Guanylate kinase, GMP k 96.5 0.0016 5.4E-08 60.8 4.1 42 305-346 7-50 (208)
328 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.00043 1.5E-08 73.1 -0.0 31 299-329 131-161 (460)
329 2obl_A ESCN; ATPase, hydrolase 96.4 0.0014 4.8E-08 66.6 3.4 29 301-329 66-94 (347)
330 2eyu_A Twitching motility prot 96.4 0.00087 3E-08 65.3 1.8 26 304-329 23-48 (261)
331 3b85_A Phosphate starvation-in 96.4 0.0011 3.6E-08 62.5 2.0 26 304-329 20-45 (208)
332 3vaa_A Shikimate kinase, SK; s 96.3 0.0017 5.9E-08 59.9 3.1 33 297-329 16-48 (199)
333 2j41_A Guanylate kinase; GMP, 96.3 0.0018 6.2E-08 59.5 3.2 28 303-330 3-30 (207)
334 4dzz_A Plasmid partitioning pr 96.3 0.022 7.4E-07 52.0 10.2 79 353-449 76-156 (206)
335 2dpy_A FLII, flagellum-specifi 96.2 0.0019 6.6E-08 67.6 3.1 29 301-329 152-180 (438)
336 3jvv_A Twitching mobility prot 96.2 0.0087 3E-07 60.9 7.7 25 305-329 122-146 (356)
337 2ehv_A Hypothetical protein PH 96.2 0.0027 9.2E-08 60.0 3.7 26 303-328 27-52 (251)
338 2oap_1 GSPE-2, type II secreti 96.1 0.0011 3.6E-08 71.0 0.5 31 299-329 253-283 (511)
339 4a74_A DNA repair and recombin 96.1 0.0026 9E-08 59.3 3.1 27 303-329 22-48 (231)
340 3asz_A Uridine kinase; cytidin 96.1 0.0024 8.1E-08 59.2 2.7 25 305-329 5-29 (211)
341 2iw3_A Elongation factor 3A; a 96.0 0.004 1.4E-07 71.2 4.7 33 297-329 452-484 (986)
342 2i3b_A HCR-ntpase, human cance 96.0 0.0029 1E-07 58.5 2.9 23 307-329 2-24 (189)
343 3kta_A Chromosome segregation 96.0 0.0038 1.3E-07 56.3 3.7 30 299-329 20-49 (182)
344 4eun_A Thermoresistant glucoki 96.0 0.0033 1.1E-07 58.0 3.1 25 305-329 28-52 (200)
345 1kag_A SKI, shikimate kinase I 95.9 0.0038 1.3E-07 55.7 3.0 23 307-329 5-27 (173)
346 2bdt_A BH3686; alpha-beta prot 95.8 0.0037 1.3E-07 56.8 2.7 21 308-328 4-24 (189)
347 3aez_A Pantothenate kinase; tr 95.8 0.0036 1.2E-07 62.6 2.6 26 304-329 88-113 (312)
348 3thx_A DNA mismatch repair pro 95.8 0.017 5.9E-07 65.9 8.5 30 297-326 653-682 (934)
349 1qhl_A Protein (cell division 95.8 0.00061 2.1E-08 65.1 -3.0 28 301-329 23-50 (227)
350 1lw7_A Transcriptional regulat 95.7 0.0025 8.4E-08 64.9 1.2 31 299-329 161-193 (365)
351 1sq5_A Pantothenate kinase; P- 95.7 0.0035 1.2E-07 62.3 2.2 24 306-329 80-103 (308)
352 1ex7_A Guanylate kinase; subst 95.7 0.0034 1.2E-07 58.1 1.9 40 309-348 4-45 (186)
353 3ec2_A DNA replication protein 95.7 0.0034 1.2E-07 56.7 1.8 25 305-329 37-61 (180)
354 4aby_A DNA repair protein RECN 95.7 0.0027 9.2E-08 65.4 1.2 32 297-329 52-83 (415)
355 2bbw_A Adenylate kinase 4, AK4 95.6 0.0061 2.1E-07 58.1 3.3 24 306-329 27-53 (246)
356 3ux8_A Excinuclease ABC, A sub 95.6 0.0046 1.6E-07 68.1 2.7 31 297-327 339-369 (670)
357 3uie_A Adenylyl-sulfate kinase 95.5 0.0065 2.2E-07 56.0 2.9 24 306-329 25-48 (200)
358 1knq_A Gluconate kinase; ALFA/ 95.4 0.007 2.4E-07 54.2 3.0 23 307-329 9-31 (175)
359 3qf7_A RAD50; ABC-ATPase, ATPa 95.3 0.011 3.7E-07 60.3 4.2 28 299-327 17-44 (365)
360 1cke_A CK, MSSA, protein (cyti 95.2 0.0094 3.2E-07 55.6 3.1 23 307-329 6-28 (227)
361 3cwq_A Para family chromosome 95.2 0.04 1.4E-06 51.2 7.3 76 353-449 68-147 (209)
362 1p9r_A General secretion pathw 95.1 0.0066 2.3E-07 63.2 1.9 25 305-329 166-190 (418)
363 1y63_A LMAJ004144AAA protein; 95.0 0.012 4.1E-07 53.5 3.1 28 302-329 6-33 (184)
364 2qt1_A Nicotinamide riboside k 94.9 0.011 3.8E-07 54.6 2.7 26 304-329 19-44 (207)
365 2if2_A Dephospho-COA kinase; a 94.9 0.011 3.8E-07 54.2 2.8 22 308-329 3-24 (204)
366 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.014 4.8E-07 54.1 3.4 27 303-329 20-46 (235)
367 2x8a_A Nuclear valosin-contain 94.9 0.0069 2.4E-07 59.2 1.3 21 309-329 47-67 (274)
368 2qor_A Guanylate kinase; phosp 94.9 0.013 4.4E-07 54.1 3.1 27 304-330 10-36 (204)
369 1np6_A Molybdopterin-guanine d 94.9 0.014 4.7E-07 53.3 3.1 24 306-329 6-29 (174)
370 1jjv_A Dephospho-COA kinase; P 94.9 0.013 4.6E-07 53.9 3.1 22 308-329 4-25 (206)
371 4e22_A Cytidylate kinase; P-lo 94.8 0.013 4.6E-07 56.2 3.2 22 306-327 27-48 (252)
372 2kjq_A DNAA-related protein; s 94.8 0.011 3.7E-07 52.3 2.3 24 306-329 36-59 (149)
373 1tf7_A KAIC; homohexamer, hexa 94.8 0.0068 2.3E-07 64.8 1.1 31 299-329 31-64 (525)
374 2ewv_A Twitching motility prot 94.8 0.011 3.7E-07 60.5 2.5 26 304-329 134-159 (372)
375 4b4t_L 26S protease subunit RP 94.8 0.088 3E-06 54.9 9.4 26 304-329 213-238 (437)
376 1cr0_A DNA primase/helicase; R 94.7 0.011 3.8E-07 57.8 2.4 29 301-329 30-58 (296)
377 3kb2_A SPBC2 prophage-derived 94.7 0.016 5.4E-07 51.2 3.0 22 308-329 3-24 (173)
378 3nwj_A ATSK2; P loop, shikimat 94.7 0.0058 2E-07 59.1 0.1 30 299-328 38-70 (250)
379 2vp4_A Deoxynucleoside kinase; 94.6 0.012 4E-07 55.7 2.1 25 305-329 19-43 (230)
380 3t61_A Gluconokinase; PSI-biol 94.5 0.017 5.8E-07 53.0 2.8 24 306-329 18-41 (202)
381 1rz3_A Hypothetical protein rb 94.4 0.017 5.8E-07 53.3 2.7 24 306-329 22-45 (201)
382 4b4t_J 26S protease regulatory 94.4 0.17 5.9E-06 52.2 10.4 24 306-329 182-205 (405)
383 1ixz_A ATP-dependent metallopr 94.4 0.011 3.8E-07 56.4 1.3 21 309-329 52-72 (254)
384 1e69_A Chromosome segregation 94.4 0.02 7E-07 57.0 3.3 28 299-327 18-45 (322)
385 3lw7_A Adenylate kinase relate 94.4 0.02 7E-07 50.3 3.0 19 308-326 3-21 (179)
386 4ido_A Atlastin-1; GTPase, GTP 94.3 0.032 1.1E-06 58.4 4.9 23 305-327 66-88 (457)
387 1n0w_A DNA repair protein RAD5 94.3 0.023 8E-07 53.2 3.5 26 303-328 21-46 (243)
388 2o5v_A DNA replication and rep 94.3 0.026 8.8E-07 57.5 3.8 30 298-328 19-48 (359)
389 3end_A Light-independent proto 94.3 0.16 5.6E-06 49.6 9.6 68 353-437 157-225 (307)
390 3cm0_A Adenylate kinase; ATP-b 94.3 0.022 7.5E-07 51.2 3.0 23 306-328 4-26 (186)
391 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.28 9.5E-06 48.7 11.0 23 307-329 46-68 (322)
392 3tqc_A Pantothenate kinase; bi 94.1 0.024 8.1E-07 56.9 3.0 23 307-329 93-115 (321)
393 1svm_A Large T antigen; AAA+ f 94.1 0.013 4.4E-07 60.2 1.1 29 301-329 164-192 (377)
394 1iy2_A ATP-dependent metallopr 94.0 0.014 4.8E-07 56.6 1.3 21 309-329 76-96 (278)
395 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.026 8.9E-07 49.8 2.9 20 308-327 25-44 (149)
396 2pez_A Bifunctional 3'-phospho 94.0 0.027 9.1E-07 50.6 3.0 24 306-329 5-28 (179)
397 4b4t_K 26S protease regulatory 93.9 0.16 5.4E-06 52.9 9.0 24 306-329 206-229 (428)
398 1sxj_E Activator 1 40 kDa subu 93.9 0.1 3.4E-06 52.0 7.3 21 308-328 38-58 (354)
399 2cvh_A DNA repair and recombin 93.9 0.029 1E-06 51.7 3.0 26 303-328 17-42 (220)
400 1ly1_A Polynucleotide kinase; 93.8 0.031 1.1E-06 49.7 3.1 21 308-328 4-24 (181)
401 2rhm_A Putative kinase; P-loop 93.8 0.028 9.5E-07 50.8 2.7 23 306-328 5-27 (193)
402 2jaq_A Deoxyguanosine kinase; 93.8 0.029 9.9E-07 51.0 2.9 22 308-329 2-23 (205)
403 1nks_A Adenylate kinase; therm 93.8 0.03 1E-06 50.3 2.9 22 308-329 3-24 (194)
404 1qhx_A CPT, protein (chloramph 93.7 0.035 1.2E-06 49.5 3.2 22 308-329 5-26 (178)
405 1xjc_A MOBB protein homolog; s 93.7 0.033 1.1E-06 50.6 3.0 24 306-329 4-27 (169)
406 2v54_A DTMP kinase, thymidylat 93.7 0.035 1.2E-06 50.6 3.2 24 306-329 4-27 (204)
407 1in4_A RUVB, holliday junction 93.6 0.03 1E-06 56.0 2.9 23 307-329 52-74 (334)
408 3trf_A Shikimate kinase, SK; a 93.6 0.037 1.3E-06 49.8 3.2 23 306-328 5-27 (185)
409 1kht_A Adenylate kinase; phosp 93.6 0.038 1.3E-06 49.6 3.2 22 307-328 4-25 (192)
410 2yvu_A Probable adenylyl-sulfa 93.5 0.036 1.2E-06 50.1 3.0 24 306-329 13-36 (186)
411 1via_A Shikimate kinase; struc 93.5 0.037 1.3E-06 49.5 3.0 23 307-329 5-27 (175)
412 1wb9_A DNA mismatch repair pro 93.5 0.041 1.4E-06 61.8 4.0 32 297-329 599-630 (800)
413 4b4t_I 26S protease regulatory 93.4 0.22 7.5E-06 51.8 8.9 25 305-329 215-239 (437)
414 4b4t_M 26S protease regulatory 93.4 0.18 6.3E-06 52.5 8.4 25 305-329 214-238 (434)
415 1odf_A YGR205W, hypothetical 3 93.2 0.04 1.4E-06 54.3 3.0 24 306-329 31-54 (290)
416 2c95_A Adenylate kinase 1; tra 93.2 0.036 1.2E-06 50.1 2.4 23 306-328 9-31 (196)
417 4b4t_H 26S protease regulatory 93.2 0.42 1.4E-05 50.1 10.8 25 305-329 242-266 (467)
418 1nlf_A Regulatory protein REPA 93.2 0.044 1.5E-06 53.2 3.1 27 302-328 26-52 (279)
419 3thx_B DNA mismatch repair pro 93.1 0.039 1.3E-06 62.8 3.1 32 297-328 664-695 (918)
420 1aky_A Adenylate kinase; ATP:A 93.1 0.049 1.7E-06 50.6 3.3 24 306-329 4-27 (220)
421 3iij_A Coilin-interacting nucl 93.1 0.048 1.6E-06 48.9 3.1 23 306-328 11-33 (180)
422 2plr_A DTMP kinase, probable t 93.1 0.05 1.7E-06 49.7 3.2 23 307-329 5-27 (213)
423 2ygr_A Uvrabc system protein A 93.0 0.037 1.3E-06 63.2 2.7 32 296-327 658-689 (993)
424 1nn5_A Similar to deoxythymidy 93.0 0.047 1.6E-06 50.1 3.0 24 305-328 8-31 (215)
425 1vht_A Dephospho-COA kinase; s 93.0 0.052 1.8E-06 50.3 3.2 22 307-328 5-26 (218)
426 2wwf_A Thymidilate kinase, put 92.9 0.05 1.7E-06 49.9 3.0 23 306-328 10-32 (212)
427 2vf7_A UVRA2, excinuclease ABC 92.9 0.031 1E-06 63.1 1.7 32 296-327 513-545 (842)
428 4eaq_A DTMP kinase, thymidylat 92.8 0.051 1.7E-06 51.5 2.9 26 304-329 24-49 (229)
429 2r6f_A Excinuclease ABC subuni 92.8 0.037 1.2E-06 63.0 2.2 32 296-327 640-671 (972)
430 1zd8_A GTP:AMP phosphotransfer 92.8 0.052 1.8E-06 50.8 3.0 23 306-328 7-29 (227)
431 1w1w_A Structural maintenance 92.8 0.056 1.9E-06 56.0 3.5 28 302-329 22-49 (430)
432 1ewq_A DNA mismatch repair pro 92.8 0.059 2E-06 60.2 3.8 24 306-329 576-599 (765)
433 3fb4_A Adenylate kinase; psych 92.8 0.055 1.9E-06 50.0 3.0 21 308-328 2-22 (216)
434 1tev_A UMP-CMP kinase; ploop, 92.8 0.058 2E-06 48.4 3.1 22 307-328 4-25 (196)
435 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.057 2E-06 51.9 3.2 23 306-328 4-26 (260)
436 2bwj_A Adenylate kinase 5; pho 92.7 0.042 1.4E-06 49.8 2.1 25 305-329 11-35 (199)
437 1m7g_A Adenylylsulfate kinase; 92.7 0.049 1.7E-06 50.4 2.6 25 305-329 24-48 (211)
438 3dl0_A Adenylate kinase; phosp 92.6 0.059 2E-06 49.8 3.0 21 308-328 2-22 (216)
439 1e6c_A Shikimate kinase; phosp 92.6 0.064 2.2E-06 47.4 3.1 22 307-328 3-24 (173)
440 2iyv_A Shikimate kinase, SK; t 92.6 0.061 2.1E-06 48.3 3.0 22 307-328 3-24 (184)
441 1uf9_A TT1252 protein; P-loop, 92.5 0.06 2.1E-06 48.9 2.9 23 307-329 9-31 (203)
442 1gtv_A TMK, thymidylate kinase 92.5 0.03 1E-06 51.5 0.8 22 308-329 2-23 (214)
443 1zak_A Adenylate kinase; ATP:A 92.4 0.059 2E-06 50.2 2.8 24 306-329 5-28 (222)
444 3qks_A DNA double-strand break 92.4 0.062 2.1E-06 49.8 2.9 21 307-327 24-44 (203)
445 2ze6_A Isopentenyl transferase 92.4 0.062 2.1E-06 51.6 2.9 22 308-329 3-24 (253)
446 2pt5_A Shikimate kinase, SK; a 92.4 0.07 2.4E-06 47.0 3.1 21 308-328 2-22 (168)
447 3cr8_A Sulfate adenylyltranfer 92.4 0.038 1.3E-06 59.5 1.6 26 304-329 367-392 (552)
448 2z0h_A DTMP kinase, thymidylat 92.3 0.066 2.3E-06 48.4 2.9 22 308-329 2-23 (197)
449 2pbr_A DTMP kinase, thymidylat 92.3 0.071 2.4E-06 47.9 3.0 21 308-328 2-22 (195)
450 1lv7_A FTSH; alpha/beta domain 92.2 0.071 2.4E-06 50.7 3.1 23 307-329 46-68 (257)
451 1pzn_A RAD51, DNA repair and r 92.2 0.067 2.3E-06 54.1 3.1 29 301-329 126-154 (349)
452 3k9g_A PF-32 protein; ssgcid, 92.2 0.27 9.1E-06 46.9 7.2 65 353-437 145-209 (267)
453 1zuh_A Shikimate kinase; alpha 92.2 0.079 2.7E-06 46.9 3.2 24 305-328 6-29 (168)
454 2vli_A Antibiotic resistance p 92.1 0.06 2E-06 48.1 2.4 22 307-328 6-27 (183)
455 2cdn_A Adenylate kinase; phosp 92.1 0.081 2.8E-06 48.3 3.3 22 307-328 21-42 (201)
456 1ukz_A Uridylate kinase; trans 92.1 0.073 2.5E-06 48.6 3.0 23 307-329 16-38 (203)
457 1qf9_A UMP/CMP kinase, protein 92.1 0.072 2.5E-06 47.7 2.8 22 307-328 7-28 (194)
458 1ypw_A Transitional endoplasmi 92.0 0.23 7.8E-06 55.8 7.4 27 303-329 235-261 (806)
459 3n70_A Transport activator; si 91.8 0.53 1.8E-05 40.7 8.1 23 307-329 25-47 (145)
460 2p5t_B PEZT; postsegregational 91.7 0.057 1.9E-06 51.7 1.8 24 306-329 32-55 (253)
461 3qkt_A DNA double-strand break 91.7 0.079 2.7E-06 53.1 2.9 41 421-461 267-312 (339)
462 2zan_A Vacuolar protein sortin 91.6 0.58 2E-05 48.6 9.5 23 307-329 168-190 (444)
463 1q3t_A Cytidylate kinase; nucl 91.6 0.091 3.1E-06 49.5 3.0 24 305-328 15-38 (236)
464 1e4v_A Adenylate kinase; trans 91.6 0.084 2.9E-06 48.9 2.7 21 308-328 2-22 (214)
465 3umf_A Adenylate kinase; rossm 91.5 0.083 2.8E-06 49.8 2.6 26 304-329 27-52 (217)
466 3tlx_A Adenylate kinase 2; str 91.5 0.098 3.3E-06 49.8 3.2 23 306-328 29-51 (243)
467 2dr3_A UPF0273 protein PH0284; 91.4 0.11 3.7E-06 48.6 3.4 25 303-327 20-44 (247)
468 3be4_A Adenylate kinase; malar 91.4 0.096 3.3E-06 48.7 2.9 23 307-329 6-28 (217)
469 3cf2_A TER ATPase, transitiona 91.4 0.23 7.8E-06 55.7 6.4 26 304-329 236-261 (806)
470 3m6a_A ATP-dependent protease 91.4 0.099 3.4E-06 56.0 3.4 25 305-329 107-131 (543)
471 2xb4_A Adenylate kinase; ATP-b 91.2 0.11 3.7E-06 48.7 3.1 21 308-328 2-22 (223)
472 3pih_A Uvrabc system protein A 91.2 0.19 6.6E-06 57.1 5.6 27 297-323 601-627 (916)
473 1gvn_B Zeta; postsegregational 91.2 0.098 3.3E-06 51.3 2.8 22 308-329 35-56 (287)
474 1jbk_A CLPB protein; beta barr 91.1 0.12 4E-06 45.7 3.1 23 307-329 44-66 (195)
475 2o8b_B DNA mismatch repair pro 91.1 0.11 3.7E-06 60.0 3.5 32 297-329 773-811 (1022)
476 3r20_A Cytidylate kinase; stru 91.1 0.12 4E-06 49.3 3.2 23 306-328 9-31 (233)
477 1ak2_A Adenylate kinase isoenz 90.9 0.13 4.3E-06 48.4 3.3 24 306-329 16-39 (233)
478 1tf7_A KAIC; homohexamer, hexa 90.5 0.13 4.4E-06 54.8 3.2 28 302-329 277-304 (525)
479 3sr0_A Adenylate kinase; phosp 90.4 0.14 4.8E-06 47.7 3.0 22 308-329 2-23 (206)
480 3ake_A Cytidylate kinase; CMP 90.3 0.13 4.6E-06 46.7 2.8 21 308-328 4-24 (208)
481 2grj_A Dephospho-COA kinase; T 90.3 0.14 4.9E-06 47.1 3.0 23 307-329 13-35 (192)
482 2ius_A DNA translocase FTSK; n 90.3 0.16 5.4E-06 54.1 3.7 31 298-328 159-189 (512)
483 3bos_A Putative DNA replicatio 90.3 0.15 5E-06 47.2 3.1 23 307-329 53-75 (242)
484 3auy_A DNA double-strand break 90.1 0.19 6.5E-06 50.9 4.1 27 300-327 20-46 (371)
485 1uj2_A Uridine-cytidine kinase 90.1 0.16 5.3E-06 48.5 3.2 22 307-328 23-44 (252)
486 2w58_A DNAI, primosome compone 89.8 0.15 5.1E-06 46.4 2.7 22 308-329 56-77 (202)
487 3cf0_A Transitional endoplasmi 89.7 0.16 5.5E-06 49.8 2.9 24 306-329 49-72 (301)
488 3lda_A DNA repair protein RAD5 89.5 0.18 6.2E-06 52.0 3.3 25 303-327 175-199 (400)
489 2p65_A Hypothetical protein PF 89.4 0.15 5E-06 45.0 2.2 22 308-329 45-66 (187)
490 4ad8_A DNA repair protein RECN 89.3 0.092 3.2E-06 55.8 0.9 28 299-327 54-81 (517)
491 2f6r_A COA synthase, bifunctio 89.3 0.17 5.8E-06 49.3 2.7 22 307-328 76-97 (281)
492 1ltq_A Polynucleotide kinase; 89.2 0.19 6.6E-06 48.8 3.1 21 308-328 4-24 (301)
493 3pxg_A Negative regulator of g 89.1 0.2 6.8E-06 52.6 3.3 24 306-329 201-224 (468)
494 3b9p_A CG5977-PA, isoform A; A 88.9 0.2 7E-06 48.5 3.0 23 307-329 55-77 (297)
495 3h4m_A Proteasome-activating n 88.8 0.21 7E-06 48.1 2.9 23 307-329 52-74 (285)
496 3pxi_A Negative regulator of g 88.8 2.1 7.1E-05 47.5 11.5 22 308-329 523-544 (758)
497 2qz4_A Paraplegin; AAA+, SPG7, 88.7 0.22 7.5E-06 47.0 3.0 25 305-329 38-62 (262)
498 1njg_A DNA polymerase III subu 88.4 0.22 7.4E-06 45.5 2.7 22 308-329 47-68 (250)
499 1fnn_A CDC6P, cell division co 88.3 0.23 7.8E-06 49.6 3.0 22 308-329 46-67 (389)
500 1sxj_C Activator 1 40 kDa subu 88.3 0.22 7.5E-06 49.5 2.8 22 308-329 48-69 (340)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=2.4e-74 Score=591.37 Aligned_cols=329 Identities=43% Similarity=0.734 Sum_probs=297.4
Q ss_pred CceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc--cceEEcCCCCCCCCCCCCCC
Q 011082 48 RMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGT 125 (494)
Q Consensus 48 ~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~ 125 (494)
+|||+++|+|+||+|||||+|||||||+|+|||||||||+||||||+|++++++|.++ +++|+|+||+||++++++|+
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~~~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~ 80 (342)
T 1lnz_A 1 MFVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEHGMSKNQHGR 80 (342)
T ss_dssp CEEEEEEEEEECCCCCCCCCCBCCCSSSCCCCBCCCCCCCCCCEEEEECTTCCCSCGGGTCCEEECCCCCCCCSTTCCCC
T ss_pred CCcceEEEEEEecCCCCceeeeehhhcccCCCCCCCCCCCCCeEEEEeCCCcChHHHhCccceEEcCCCCCCCCCCCcCC
Confidence 4999999999999999999999999999999999999999999999999999999987 68999999999999999999
Q ss_pred CCCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCccccc
Q 011082 126 CGEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEI 205 (494)
Q Consensus 126 ~g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (494)
+|+|++|+||+||+|++.+ ++
T Consensus 81 ~g~d~~~~vp~gt~v~~~~----------------------------------~~------------------------- 101 (342)
T 1lnz_A 81 NADDMVIKVPPGTVVTDDD----------------------------------TK------------------------- 101 (342)
T ss_dssp CCCCEEEEECTTEEEEETT----------------------------------TC-------------------------
T ss_pred CCCCEEEEcCCccEEEeCC----------------------------------CC-------------------------
Confidence 9999999999999999631 11
Q ss_pred cccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCccccccc
Q 011082 206 TSKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQ 285 (494)
Q Consensus 206 ~~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~ 285 (494)
.+++||..+++.+++|+||.||+||.+|.++++ +.+.+
T Consensus 102 -----------------------~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~-----~~p~~-------------- 139 (342)
T 1lnz_A 102 -----------------------QVIADLTEHGQRAVIARGGRGGRGNSRFATPAN-----PAPQL-------------- 139 (342)
T ss_dssp -----------------------CEEEEECSTTCEEEEECCCCCCCCGGGSCBTTB-----SSCCC--------------
T ss_pred -----------------------cEehhhhcCCcEEEEeCCCCCccCccccccccc-----ccccc--------------
Confidence 167899999999999999999999999999877 33321
Q ss_pred ccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCCcc
Q 011082 286 SSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLI 364 (494)
Q Consensus 286 ~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGli 364 (494)
...+++|+++.+.++++.+++|+|||++||||||||++|++.++.+++|+|||+.|+.+.+.+++ ..+.++||||++
T Consensus 140 --~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i 217 (342)
T 1lnz_A 140 --SENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 217 (342)
T ss_dssp --CCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred --ccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCc
Confidence 24689999999999999999999999999999999999999999999999999999999999987 889999999999
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY 444 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~ 444 (494)
++++...++.+.|+++++++|++|+|+|+++.. +..+.+.+..+..+|..|.+.+..+|+|+|+||+|+....+..
T Consensus 218 ~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~----~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~ 293 (342)
T 1lnz_A 218 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE----GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENL 293 (342)
T ss_dssp HHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS----CCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHH
T ss_pred ccccccchhHHHHHHHHHhccEEEEEEECCccc----ccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHH
Confidence 988888899999999999999999999998621 1367888899999999887767899999999999999876666
Q ss_pred HHHHHHcCC-CCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 445 EELERRVQG-VPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 445 ~~L~~~~~~-~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+.+.+.+.. .++++|||++++|+++|+++|.+.+.+...
T Consensus 294 ~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 294 EAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp HHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred HHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 777776632 679999999999999999999999987665
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=1.4e-70 Score=576.22 Aligned_cols=324 Identities=44% Similarity=0.705 Sum_probs=293.1
Q ss_pred CceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc-cceEEcCCCCCCCCCCCCCCC
Q 011082 48 RMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL-QHHLRAGKGGHGAPKNMIGTC 126 (494)
Q Consensus 48 ~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~-~~~~~a~~G~~G~~~~~~G~~ 126 (494)
+|||+++|+|+||+|||||+||+||||+|+|||||||||+||||||+|+++++||.++ +++|+|+||+||++++++|++
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~f~re~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~a~~g~~g~~~~~~g~~ 80 (416)
T 1udx_A 1 MFQDVLVITVAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGGSVYLRARGSVDSLSRLSKRTYKAEDGEHGRGSQQHGRG 80 (416)
T ss_dssp CCCSEEEEEEECCCCCCCCCCBCCBTTBSCCCBCCCCCCCCCCEEEEECTTCCSSTTSCSSCEECCCCCCCBTTTBCCCC
T ss_pred CCcceEEEEEEecCCCCceeeeeccccccCCCCCCCCCCCCCeEEEEeCCCcCchhhhhhceEEcCCCCCCCCCCCcCCC
Confidence 4999999999999999999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred CCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCcccccc
Q 011082 127 GEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEIT 206 (494)
Q Consensus 127 g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (494)
|+|++|+||+||+|++.+ ++
T Consensus 81 g~d~~~~vp~gt~v~~~~----------------------------------~~-------------------------- 100 (416)
T 1udx_A 81 GEDLVIEVPRGTRVFDAD----------------------------------TG-------------------------- 100 (416)
T ss_dssp CCCEEEEECSSEEEEETT----------------------------------TC--------------------------
T ss_pred CCCEEEecCCccEEEecC----------------------------------CC--------------------------
Confidence 999999999999999631 11
Q ss_pred ccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccccc
Q 011082 207 SKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQS 286 (494)
Q Consensus 207 ~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~~ 286 (494)
.+++||..+++.+++|+||.||+||.+|+++++ +.+.+
T Consensus 101 ----------------------~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~-----~~p~~--------------- 138 (416)
T 1udx_A 101 ----------------------ELLADLTEEGQTVLVARGGAGGRGNMHFVSPTR-----QAPRF--------------- 138 (416)
T ss_dssp ----------------------CEEEEECSTTCEEEEECCCCCCCCGGGGCCSSC-----SSCCE---------------
T ss_pred ----------------------cEEeeccCCCceEEEecCCCCCcccceeecccc-----cCccc---------------
Confidence 167899999999999999999999999999887 33321
Q ss_pred cccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCCccC
Q 011082 287 SLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIK 365 (494)
Q Consensus 287 ~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGli~ 365 (494)
.+.|++|+++.++|+++.+++|+|||+|||||||||++|++..+.+++|+|||+.|+.+.+.+++ ..++++||||+++
T Consensus 139 -~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 139 -AEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp -EECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred -ccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 25799999999999999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE 445 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~ 445 (494)
+++...++...|++++++++.+|+|+|++. .+..++..+..++..+.+.+..+|.|+|+||+|+... +.++
T Consensus 218 ~a~~~~~L~~~fl~~~era~~lL~vvDls~--------~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~ 288 (416)
T 1udx_A 218 GASEGKGLGLEFLRHIARTRVLLYVLDAAD--------EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVK 288 (416)
T ss_dssp CGGGSCCSCHHHHHHHTSSSEEEEEEETTS--------CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHH
T ss_pred chhhhhhhhHHHHHHHHHHHhhhEEeCCcc--------CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHH
Confidence 888888888899999999999999999972 5778888999999988877788999999999999887 4455
Q ss_pred HHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 446 ELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 446 ~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
.+.+.+ .+.++++|||++++|+++|++.|.+++.+...
T Consensus 289 ~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 289 ALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 555544 35689999999999999999999999977654
No 3
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.95 E-value=3.8e-29 Score=258.32 Aligned_cols=253 Identities=21% Similarity=0.257 Sum_probs=154.4
Q ss_pred cchhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccc
Q 011082 208 KASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDD 284 (494)
Q Consensus 208 ~l~iF~~~A~t~e~~---ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~ 284 (494)
.|+||++||.|++++ +||+|.|.+++| ..|..+....||.|.+|+.+...+.. .+.++.++..+++++++
T Consensus 90 il~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~~~g~ge~~~e~~------~~~~~~~i~~l~~~l~~ 162 (364)
T 2qtf_A 90 LLEIFALHAGSKEAKMQIELARLKYELPII-KETYTKSKIGEQQGPLGAGTYGVEST------IKFYKRRINKLMKELES 162 (364)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC---------------------CH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCCcCCcCHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 489999999999966 999999999999 78888888888887776554433322 33455667777777776
Q ss_pred cccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCcc
Q 011082 285 QSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI 364 (494)
Q Consensus 285 ~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli 364 (494)
....+...++.+ .....+.|+|+|+||||||||+|+|++....+.+++|+|+++..+.+.+++..+.++||||++
T Consensus 163 ~~~~r~~~r~~r-----~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i 237 (364)
T 2qtf_A 163 IKIFKEKSIESN-----KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237 (364)
T ss_dssp HHC------------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBC
T ss_pred HHHHHHHHHHhh-----hhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCch
Confidence 655443333333 123455699999999999999999999987788999999999999999999999999999997
Q ss_pred CCccccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCC--CHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 365 KGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIK--PWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 365 ~~a~~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~--~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
...+. .+...| +..+..+|++++|+|+++. . ...+...+...+..+ .+.+.|+|+|+||+|+.+
T Consensus 238 ~~lp~--~lve~f~~tl~~~~~aD~il~VvD~s~~-------~~~~~~~~~~~~~~L~~l--~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 238 RGIPP--QIVDAFFVTLSEAKYSDALILVIDSTFS-------ENLLIETLQSSFEILREI--GVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp SSCCG--GGHHHHHHHHHGGGGSSEEEEEEETTSC-------HHHHHHHHHHHHHHHHHH--TCCSCCEEEEEECGGGCC
T ss_pred hcCCH--HHHHHHHHHHHHHHhCCEEEEEEECCCC-------cchHHHHHHHHHHHHHHh--CcCCCCEEEEEECCCCCC
Confidence 64221 233333 4456778999999999862 2 223333333333332 235789999999999976
Q ss_pred hH--HHHHH---H-HHH-cCCCCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 440 AE--EVYEE---L-ERR-VQGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 440 ~~--e~~~~---L-~~~-~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
.. ..... + ... .+..+++++||+++.|+++|++.|.+.+.....
T Consensus 307 ~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 307 GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 32 21222 2 222 223468999999999999999999998866544
No 4
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=5.7e-28 Score=257.84 Aligned_cols=160 Identities=22% Similarity=0.274 Sum_probs=123.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeecCcceEEecCCCcc-CCccccccchh-hHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI-KGAHENRGLGH-AFLRH 380 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli-~~a~~~~~L~~-~fl~~ 380 (494)
+...+|+|+|+||||||||+|+|++.+ ..+.++++||.++....+.+++..+.++||||+. +.......++. ..+.+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 445689999999999999999999885 4689999999999999999999999999999998 65444344443 34678
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcC-CCCEEEE
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQ-GVPIYPV 459 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~-~~~ii~I 459 (494)
++.+|++|+|+|+++. ...... .++..+ .++|+|+|+||+|+..... .+.+.+... ..++++|
T Consensus 321 ~~~aD~vl~VvD~s~~-------~s~~~~-~il~~l-------~~~piivV~NK~DL~~~~~-~~~~~~~~~~~~~~i~i 384 (482)
T 1xzp_A 321 IEKADIVLFVLDASSP-------LDEEDR-KILERI-------KNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHMVKI 384 (482)
T ss_dssp HHHCSEEEEEEETTSC-------CCHHHH-HHHHHH-------TTSSEEEEEEECSSCCCCC-HHHHHHHHTCSTTEEEE
T ss_pred hhcccEEEEEecCCCC-------CCHHHH-HHHHHh-------cCCCEEEEEECcccccccC-HHHHHHHhcCCCcEEEE
Confidence 9999999999999873 333332 222221 3789999999999975311 123333332 3589999
Q ss_pred EcccCCCHHHHHHHHHHHhc
Q 011082 460 CAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~ 479 (494)
||++++|+++|+++|.+.+.
T Consensus 385 SAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998754
No 5
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-25 Score=230.00 Aligned_cols=156 Identities=27% Similarity=0.431 Sum_probs=121.8
Q ss_pred ccCCCCCCcccccccccccCCC-CCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEe
Q 011082 271 YKNGPSDPKLASDDQSSLVAGE-PGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMN 349 (494)
Q Consensus 271 ~~~ri~~l~~~~~~~~~~~~g~-~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~ 349 (494)
++.|++++++++.+.+..+.+. .|. .+..+....++|+|||+||||||||||+||+.++.+++|||||++|..|.+.
T Consensus 38 lk~kla~lr~el~~~~~~~~~~~~~~--~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~ 115 (376)
T 4a9a_A 38 LKAKLAKLRRELLTSASSGSGGGAGI--GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIR 115 (376)
T ss_dssp HHHHHHHHHHHHHCC-------CCSB--TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCCC--CceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEE
Confidence 3455667777776655443332 222 2223456778999999999999999999999999999999999999999999
Q ss_pred ecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEE
Q 011082 350 FDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL 429 (494)
Q Consensus 350 ~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I 429 (494)
+++.++.++||||++++++.+.+++.+|+.+++.||++++|+|+++ |....+.+..+|..+...+..+|.+
T Consensus 116 ~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~---------p~~~~~~i~~EL~~~~~~l~~k~~~ 186 (376)
T 4a9a_A 116 YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK---------PLHHKQIIEKELEGVGIRLNKTPPD 186 (376)
T ss_dssp ETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS---------HHHHHHHHHHHHHHTTEEETCCCCC
T ss_pred eCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc---------cHHHHHHHHHHHHHhhHhhccCChh
Confidence 9999999999999999999999999999999999999999999875 5677777778888777667777888
Q ss_pred EEEeCCCc
Q 011082 430 VVANKIDE 437 (494)
Q Consensus 430 lVlNKiDl 437 (494)
+++||+|.
T Consensus 187 i~~nK~d~ 194 (376)
T 4a9a_A 187 ILIKKKEK 194 (376)
T ss_dssp EEEEECSS
T ss_pred hhhhHhhh
Confidence 88888775
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=8.2e-20 Score=184.20 Aligned_cols=165 Identities=24% Similarity=0.311 Sum_probs=127.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeec-CcceEEecCCCccCCc--c-ccccchhhHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGA--H-ENRGLGHAFLRHI 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a--~-~~~~L~~~fl~~i 381 (494)
..|+|+|.||||||||+|+|++.+.. +++++.||.....+.+..+ +.++.++||||+.+.. . .+..+...+..++
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 37999999999999999999998765 5788999999999999888 8999999999997643 1 1122333446678
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC-ChH---HHHHHHHHHc-CCCCE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAE---EVYEELERRV-QGVPI 456 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~-~~~---e~~~~L~~~~-~~~~i 456 (494)
..+|++++|+|+++. ........++..+.. .+.|+|+|+||+|+. ... +..+.+.+.+ ...++
T Consensus 91 ~~aD~il~VvD~~~~-------~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 91 EEADVILFMIDATEG-------WRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHCSEEEEEEETTTB-------SCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred hcCCEEEEEEeCCCC-------CCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 899999999999873 334444333444432 368999999999997 432 4455666666 45789
Q ss_pred EEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 457 YPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
++|||+++.|+++|++.|.+.+.+...
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999999999976543
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.81 E-value=5.5e-20 Score=164.66 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=107.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
++|+++|.+|||||||+++|++.... ...++.+|.+.....+.+++..+.++||||+.........+...+...+..+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 57999999999999999999987653 57788888888888888888899999999997643211112333445677899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCC
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEE 465 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~ 465 (494)
++++|+|+++.. ... ...+...+.. .+.|+++|+||+|+....+....+. .+...+++++||+++.
T Consensus 82 ~~i~v~d~~~~~-------~~~-~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 82 VVLFAVDGRAEL-------TQA-DYEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEHAR 147 (161)
T ss_dssp EEEEEEESSSCC-------CHH-HHHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTTTB
T ss_pred EEEEEEECCCcc-------cHh-HHHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEecccCC
Confidence 999999998731 111 1222222322 2689999999999986543333333 2222378999999999
Q ss_pred CHHHHHHHHHHHh
Q 011082 466 GVPELKVGLRMLV 478 (494)
Q Consensus 466 gI~~L~~~I~~~l 478 (494)
|+++++++|.+.+
T Consensus 148 gv~~l~~~l~~~l 160 (161)
T 2dyk_A 148 GLEELLEAIWERL 160 (161)
T ss_dssp SHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHhC
Confidence 9999999998765
No 8
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.81 E-value=1.3e-19 Score=164.66 Aligned_cols=156 Identities=22% Similarity=0.410 Sum_probs=110.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccc--ccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~--~~L~~~fl~~i~~a 384 (494)
.+|+|+|++|||||||+++|++....+..++++|.+...+.+.+++..+.++||||+.+..... ..+...++. ...+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cCCC
Confidence 3799999999999999999999877778888888888888888888899999999987632110 111112211 1368
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~~~~~ii~ISA 461 (494)
|++++|+|+++ .+....+..++.. .+.|+|+|+||+|+..... ..+.+.+.+ +.+++++||
T Consensus 83 ~~~i~v~D~~~----------~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~SA 146 (165)
T 2wji_A 83 DLVVNIVDATA----------LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLSA 146 (165)
T ss_dssp SEEEEEEETTC----------HHHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECBG
T ss_pred CEEEEEecCCc----------hhHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHh-CCCEEEEEc
Confidence 99999999875 2333344444433 2689999999999853211 123444444 468999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 011082 462 VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~ 479 (494)
++++|++++++.|.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999988763
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=167.47 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=122.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+|+|.+|||||||+++|++........+.++.+.....+.+++ ..+.++||||... +......++..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 88 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYYRG 88 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GCTTHHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh-------hhhhHHHHHhh
Confidence 35799999999999999999998766555566667777777777877 5789999999754 22334566788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ...+..+..++..+..+.. .+.|+++|+||+|+.... +....+.+.+ +.+++++
T Consensus 89 ~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (196)
T 3tkl_A 89 AHGIIVVYDVTD-------QESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLET 158 (196)
T ss_dssp CSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCCEEEE
T ss_pred CCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHc-CCcEEEE
Confidence 999999999987 2445556666666655432 368999999999997542 2334444444 5789999
Q ss_pred EcccCCCHHHHHHHHHHHhcccC
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
||+++.|+++++++|.+.+.+..
T Consensus 159 Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998876643
No 10
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=1.6e-20 Score=184.58 Aligned_cols=155 Identities=23% Similarity=0.345 Sum_probs=118.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccc--cchhhHH-HHH--
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR--GLGHAFL-RHI-- 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~--~L~~~fl-~~i-- 381 (494)
++|+|+|.+|||||||+|+|++....+++++++|.+...+.+.+++..+.++||||+........ .....+. ..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 57999999999999999999999888899999999999999999999999999999976432100 0111111 223
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYP 458 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ 458 (494)
..+|++++|+|+++ .+....+..++.. ...|+|+|+||+|+.... ...+.+.+.+ +.++++
T Consensus 82 ~~~d~vi~VvDas~----------~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~ 145 (256)
T 3iby_A 82 LEYDCIINVIDACH----------LERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLL-GCSVIP 145 (256)
T ss_dssp SCCSEEEEEEEGGG----------HHHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH-CSCEEE
T ss_pred CCCCEEEEEeeCCC----------chhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-CCCEEE
Confidence 67999999999886 2333334444432 268999999999986432 1234455555 579999
Q ss_pred EEcccCCCHHHHHHHHHHH
Q 011082 459 VCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~ 477 (494)
+||+++.|+++|++.|.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999887
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=7e-20 Score=184.27 Aligned_cols=164 Identities=26% Similarity=0.262 Sum_probs=122.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCccc-cccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~-~~~L~~~fl~~i~~ad 385 (494)
.|+|||.||||||||+|+|++.+.. +++.+.||.+...+.+..++.++.++||||+.+..+. +..+...+..++..+|
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad 88 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN 88 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999998765 4677889988888888777889999999999763321 1112333456677899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HHHHHHHHcCCCCEEEEEcccC
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~~~L~~~~~~~~ii~ISA~~g 464 (494)
++++|+|+++.. ... ...++..+..+ ..+.|.|+|+||+|+..... ..+.+.+..+..++++|||+++
T Consensus 89 ~il~VvD~~~~~-------~~~-~~~i~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 89 AVVWVVDLRHPP-------TPE-DELVARALKPL---VGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDE 157 (301)
T ss_dssp EEEEEEETTSCC-------CHH-HHHHHHHHGGG---TTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCH
T ss_pred EEEEEEECCCCC-------ChH-HHHHHHHHHhh---cCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCC
Confidence 999999998731 112 23333444332 13689999999999987655 5555554434457899999999
Q ss_pred CCHHHHHHHHHHHhcccC
Q 011082 465 EGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 465 ~gI~~L~~~I~~~l~~~~ 482 (494)
.|+++|++.|...+.+..
T Consensus 158 ~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 158 RQVAELKADLLALMPEGP 175 (301)
T ss_dssp HHHHHHHHHHHTTCCBCC
T ss_pred CCHHHHHHHHHHhcccCC
Confidence 999999999998876543
No 12
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=166.65 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=117.9
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+++|.+|||||||+++|++........+.+|.+.....+.+++ ..+.++||||..... .....++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 81 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-------TITSTYYRG 81 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS-------SCCGGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh-------hhHHHHhcc
Confidence 35899999999999999999998766556666677777777788877 678999999965422 223345678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ..+...+..++.++... ....|+|+|+||+|+.... +....+.... +.+++++
T Consensus 82 ~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (181)
T 3tw8_B 82 THGVIVVYDVTS-------AESFVNVKRWLHEINQN---CDDVCRILVGNKNDDPERKVVETEDAYKFAGQM-GIQLFET 150 (181)
T ss_dssp CSEEEEEEETTC-------HHHHHHHHHHHHHHHHH---CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCCEEEC
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHh---CCCCCEEEEEECCCCchhcccCHHHHHHHHHHc-CCeEEEE
Confidence 999999999987 24455555566655443 3478999999999986532 2233333333 5689999
Q ss_pred EcccCCCHHHHHHHHHHHhcccCC
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
||+++.|+++++++|.+.+.+...
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 151 SAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999988766543
No 13
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.81 E-value=1.8e-19 Score=164.24 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=114.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC---cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~---~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|.+|||||||+++|++........+.++.+.....+.+++ ..+.++||||.... .......+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG-------GKMLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT-------CTTHHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc-------cchhhHHHhh
Confidence 3799999999999999999998643322223333455566677766 68999999997652 2234456788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGA----EEVYEELERRVQGVPIYP 458 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ 458 (494)
+|++++|+|+++. .++..+..++.++..+.......| +++|+||+|+... .+....+.+.. +.++++
T Consensus 80 ~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 151 (178)
T 2hxs_A 80 AQGVLLVYDITNY-------QSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN-GFSSHF 151 (178)
T ss_dssp CSEEEEEEETTCH-------HHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEE
T ss_pred CCEEEEEEECCCH-------HHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc-CCcEEE
Confidence 9999999999872 445556666666665543223566 7889999999642 22233344433 568999
Q ss_pred EEcccCCCHHHHHHHHHHHhcccC
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+||+++.|+++++++|.+.+.+..
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 152 VSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp ECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999998886554
No 14
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.80 E-value=6.7e-19 Score=158.30 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=110.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++... ...+..|+.......+.+++ ..+.++||||..+. .......+..+|
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d 76 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF-------TAMRDLYMKNGQ 76 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS-------TTHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHhccCC
Confidence 699999999999999999998643 23344444333334444554 56899999997652 223345678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..++.....+..++..+. ...+.|+++|+||+|+.+. .+....+.+.+.+.+++++||
T Consensus 77 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 77 GFALVYSITA-------QSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp EEEEEEETTC-------HHHHHTHHHHHHHHHHHH-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh-CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 9999999987 234455555555554432 2247899999999999653 233344444445678999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 011082 462 VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~ 479 (494)
+++.|+++++++|.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTBSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 15
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=1.7e-19 Score=171.23 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=113.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC--CCcccccceeecceeeEEe-ecCcceEEecCCCccCCcccc------ccchhh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMN-FDDIQITVADIPGLIKGAHEN------RGLGHA 376 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~--~~i~~~~ftTl~p~~g~v~-~~~~~~~l~DtPGli~~a~~~------~~L~~~ 376 (494)
..+|+|+|.+|||||||+|+|++.. ..+.+++++|.......+. ..+..+.++||||+....... ..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 4589999999999999999999986 3567788888777666555 445889999999986532111 112222
Q ss_pred HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH---HH----HHHH
Q 011082 377 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YE----ELER 449 (494)
Q Consensus 377 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~---~~----~L~~ 449 (494)
++.....+|++++|+|+++.. . .....++..+.. ...|+|+|+||+|+....+. .+ .+..
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~-------~-~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPL-------T-ELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCC-------C-HHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcCcCEEEEEEeCCCCC-------C-HHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 333333478899999998631 1 223334444432 36899999999999876442 22 2222
Q ss_pred H-----cCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 450 R-----VQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 450 ~-----~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
. ....+++++||+++.|+++|+++|.+.+....
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 2 14568999999999999999999999987654
No 16
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.80 E-value=1.6e-19 Score=162.86 Aligned_cols=158 Identities=17% Similarity=0.261 Sum_probs=111.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+. .......+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF-------RTITTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGT-------SCCCHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh-------hhhHHHHhccC
Confidence 3799999999999999999998765444444444455556666665 57899999997542 22234567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~ISA 461 (494)
|++++|+|+++. .....+..++..+..+.. ...|+++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 77 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa 146 (170)
T 1g16_A 77 MGIILVYDITDE-------RTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKEL-GIPFIESSA 146 (170)
T ss_dssp EEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHH-TCCEEECBT
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCccCHHHHHHHHHHc-CCeEEEEEC
Confidence 999999999872 344555566666554421 36899999999999532 23333444444 568999999
Q ss_pred ccCCCHHHHHHHHHHHhccc
Q 011082 462 VLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~ 481 (494)
+++.|++++++.|.+.+.+.
T Consensus 147 ~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 17
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.80 E-value=4.8e-21 Score=199.83 Aligned_cols=164 Identities=30% Similarity=0.482 Sum_probs=98.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEee---------------------cC---cceEEecCCCc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF---------------------DD---IQITVADIPGL 363 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~---------------------~~---~~~~l~DtPGl 363 (494)
+|+|||.||||||||+|+|++.+..+++|||||.+++.|.+.+ ++ .++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999998877889999999999997542 22 46899999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCC----CCCCCHHHHHHHHHHHHhhh-------------------
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGR----KGIKPWKQLRDLIIELEHHQ------------------- 420 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~----~~~~~~~~~~~l~~eL~~~~------------------- 420 (494)
.++++.+.+++..|+.+++.+|++++|+|+++..+.. ...+|..+++.+..||..+.
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~~ 161 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQK 161 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSSC
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 9888888888888999999999999999998731100 01246665555544443220
Q ss_pred ------------------------------------------------cccCCCCEEEEEeCCCcCChHHHHHHHHHHc-
Q 011082 421 ------------------------------------------------EGLSDRPSLVVANKIDEDGAEEVYEELERRV- 451 (494)
Q Consensus 421 ------------------------------------------------~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~- 451 (494)
..+..+|+|+|+||+|+.. .+.++.+.+.+
T Consensus 162 ~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~-~~~l~~l~~~~~ 240 (397)
T 1wxq_A 162 IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAAS-DEQIKRLVREEE 240 (397)
T ss_dssp CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSC-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccc-hHHHHHHHHHHh
Confidence 0012499999999999984 44455555544
Q ss_pred -CCCCEEEEEcccCCCHHHHHH
Q 011082 452 -QGVPIYPVCAVLEEGVPELKV 472 (494)
Q Consensus 452 -~~~~ii~ISA~~g~gI~~L~~ 472 (494)
.+.++|+|||+.+.++.+|++
T Consensus 241 ~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 241 KRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HTTCEEEEECHHHHHHHHSCSS
T ss_pred hcCCcEEEEeccchhhHHHHHh
Confidence 256899999999999887644
No 18
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.80 E-value=7.4e-19 Score=158.77 Aligned_cols=159 Identities=19% Similarity=0.163 Sum_probs=107.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+.+|.+.....+.+++ ..+.++||||....... .....+..+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccC
Confidence 3799999999999999999998755555555566666677777776 56789999998652110 112346779
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++.....++.++..... ..+.|+++|+||+|+.+. .+....+.+.. +.+++++|
T Consensus 77 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 147 (169)
T 3q85_A 77 DAFLIVFSVTD-------RRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTL-SCKHIETS 147 (169)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECB
T ss_pred CEEEEEEECCC-------hHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc-CCcEEEec
Confidence 99999999987 2455566666666654422 237899999999998643 22333444444 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|++++++.|.+.+..
T Consensus 148 a~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHh
Confidence 99999999999999987754
No 19
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.80 E-value=3.8e-20 Score=169.94 Aligned_cols=161 Identities=24% Similarity=0.305 Sum_probs=114.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccch-hhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~-~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++... .+.+++++|.+...+.+.+++..+.++||||+.+.......+. ...+.++..+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~a 84 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 84 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999998764 4678899999888899999888899999999965322111111 1123568899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g 464 (494)
|++++|+|+++.. +... ..++.++.... ..+.|+|+|+||+|+..... .+.+ ....+++++||+++
T Consensus 85 d~~i~v~D~~~~~-------s~~~-~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~---~~~~-~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 85 DRVLFMVDGTTTD-------AVDP-AEIWPEFIARL--PAKLPITVVRNKADITGETL---GMSE-VNGHALIRLSARTG 150 (172)
T ss_dssp SEEEEEEETTTCC-------CCSH-HHHCHHHHHHS--CTTCCEEEEEECHHHHCCCC---EEEE-ETTEEEEECCTTTC
T ss_pred CEEEEEEECCCCC-------CHHH-HHHHHHHHHhc--ccCCCEEEEEECccCCcchh---hhhh-ccCCceEEEeCCCC
Confidence 9999999998732 1111 23444444332 23689999999999854210 0000 13457899999999
Q ss_pred CCHHHHHHHHHHHhccc
Q 011082 465 EGVPELKVGLRMLVNGE 481 (494)
Q Consensus 465 ~gI~~L~~~I~~~l~~~ 481 (494)
.|+++|++.|.+.+...
T Consensus 151 ~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp TTHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHhhhc
Confidence 99999999999887543
No 20
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.79 E-value=9e-19 Score=159.43 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=113.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+ +.......+..+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-------FRSLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-------GHHHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh-------hhhhHHHHHhcC
Confidence 4799999999999999999998754433334444444455666666 5789999999754 222333456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc--cCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG--LSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~--l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~I 459 (494)
|++++|+|+++. .+...+..+..++..+... ....|+++|+||+|+... .+....+.+.....+++++
T Consensus 81 ~~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
T 1wms_A 81 DCCLLTFSVDDS-------QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFET 153 (177)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEEC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEE
Confidence 999999999872 3455556666666544321 146899999999998642 2233334443456789999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|+++++++|.+.+.+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 154 SAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 21
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.79 E-value=5.1e-19 Score=162.57 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=115.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc--ceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++.. ....++.|+.+.....+.+++. .+.++||||..+ +.......+..+|
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~ 77 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRTGE 77 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC----------CTTHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH-------HHHHHHHHHhcCC
Confidence 79999999999999999999764 3456666666666666667763 477899999765 2223345677899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEEEcc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~ISA~ 462 (494)
++++|+|+++ ..++.....+...+..+. ...+.|+++|+||+|+... .+....+.+.+ +.+++++||+
T Consensus 78 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 148 (189)
T 4dsu_A 78 GFLCVFAINN-------TKSFEDIHHYREQIKRVK-DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY-GIPFIETSAK 148 (189)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHT-TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH-TCCEEECCTT
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECccCcccccCHHHHHHHHHHc-CCeEEEEeCC
Confidence 9999999987 244556666666665542 2247899999999999753 23344455544 5789999999
Q ss_pred cCCCHHHHHHHHHHHhccc
Q 011082 463 LEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~~ 481 (494)
++.|+++++++|.+.+.+.
T Consensus 149 ~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 22
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=165.22 Aligned_cols=157 Identities=16% Similarity=0.202 Sum_probs=111.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +.......+..+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH-------HHHHHHHHhcCC
Confidence 4799999999999999999998754433344444555566666766 5789999999754 333455678899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++. .+...+..+...+..+. ..+.|+++|+||+|+... .+....+.+.+.+.+++++|
T Consensus 100 d~iilV~D~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S 170 (192)
T 2il1_A 100 KGIILVYDITKK-------ETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEAS 170 (192)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECB
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEe
Confidence 999999999872 34555555655555442 236899999999999653 22334444444467899999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|+++++++|.+.+.
T Consensus 171 A~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 171 AKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=8.1e-20 Score=181.19 Aligned_cols=159 Identities=25% Similarity=0.424 Sum_probs=121.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccc--ccchhhHHHH---H
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRH---I 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~--~~L~~~fl~~---i 381 (494)
.+|+|+|.+|||||||+|+|++....+++++++|.++..+.+.+.+..+.++||||+.+..... ..+...+.+. .
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 3799999999999999999999987889999999999999999988999999999998743211 1122222222 2
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHcCCCCEEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYP 458 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~~~~~ii~ 458 (494)
..+|++++|+|+++ .+....+..++... +.|+|+|+||+|+..... ..+.+.+.+ +.++++
T Consensus 84 ~~~d~ii~VvD~~~----------~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~i~ 147 (274)
T 3i8s_A 84 GDADLLINVVDASN----------LERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARL-GCPVIP 147 (274)
T ss_dssp TCCSEEEEEEEGGG----------HHHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHH-TSCEEE
T ss_pred cCCCEEEEEecCCC----------hHHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhc-CCCEEE
Confidence 58899999999876 23334444444432 689999999999864321 234555555 578999
Q ss_pred EEcccCCCHHHHHHHHHHHhccc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+||+++.|+++|++.|.+.+...
T Consensus 148 ~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 148 LVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEcCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999887654
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=1.3e-18 Score=156.00 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=111.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++... ...+..|+.......+.+++ ..+.++||||..+ +.......+..+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC----------CHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch-------hHHHHHHHhhcC
Confidence 3799999999999999999998653 34555555555555566666 4789999999754 233345567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ...+.....+..++..+.. ..+.|+++|+||+|+.+. .+....+.+.. +.+++++|
T Consensus 77 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 147 (168)
T 1u8z_A 77 EGFLCVFSITE-------MESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-NVNYVETS 147 (168)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEECC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHc-CCeEEEeC
Confidence 99999999987 2445556666666655432 237899999999998653 12222233333 46899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 148 a~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 148 AKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999887653
No 25
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=9.6e-19 Score=161.70 Aligned_cols=160 Identities=22% Similarity=0.242 Sum_probs=113.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|++.... .+ ..|.......+.+++..+.++||||..+ +...+...+..+|+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~ 86 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVINNTRFLMWDIGGQES-------LRSSWNTYYTNTEF 86 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--EE-ECCSCSSCEEEEETTEEEEEEECCC-----------CGGGHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cC-cCCCccceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCCE
Confidence 47999999999999999999976432 22 3344555667778888999999999865 22234456788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH-c--CCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-V--QGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~-~--~~~~ii~IS 460 (494)
+++|+|+++ ..++.....++.++.... ...+.|+++|+||+|+... ++..+.+... + .+.+++++|
T Consensus 87 ii~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 87 VIVVVDSTD-------RERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp EEEEEETTC-------TTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred EEEEEeCCC-------HHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEcc
Confidence 999999987 356677766666665431 1347899999999999763 3333333221 1 245789999
Q ss_pred cccCCCHHHHHHHHHHHhcccCCc
Q 011082 461 AVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
|+++.|+++++++|.+.+....+.
T Consensus 159 a~~g~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp TTTTBTHHHHHHHHHHHHCC----
T ss_pred CCCCcCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999988765543
No 26
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=7.5e-19 Score=180.56 Aligned_cols=173 Identities=29% Similarity=0.500 Sum_probs=126.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-----------------cceEEecCCCccCCccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-----------------IQITVADIPGLIKGAHE 369 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-----------------~~~~l~DtPGli~~a~~ 369 (494)
.+|+|||.||||||||+|+|++....+++|||+|++|+.|.+.+++ ..+.++||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 3699999999999999999999888889999999999999998876 36899999999999888
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCC---CCCCCCHHHHHHHHHHHHhh---------------------------
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDG---RKGIKPWKQLRDLIIELEHH--------------------------- 419 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~---~~~~~~~~~~~~l~~eL~~~--------------------------- 419 (494)
+.+++..|+.+++.+|++++|+|+++..+. ....+|..++..+..||..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 888999999999999999999999873110 00135666665554444210
Q ss_pred ----------h---------------------cccCCCCEEEEEeCCCcCC-hHHHHHHHHHHc--CCCCEEEEEccc--
Q 011082 420 ----------Q---------------------EGLSDRPSLVVANKIDEDG-AEEVYEELERRV--QGVPIYPVCAVL-- 463 (494)
Q Consensus 420 ----------~---------------------~~l~~~P~IlVlNKiDl~~-~~e~~~~L~~~~--~~~~ii~ISA~~-- 463 (494)
. .-+..+|+|+|+|+.|... .+...+.+++.. .+.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~ 242 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIES 242 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHH
Confidence 0 0134699999999998652 234455555544 356899999764
Q ss_pred --------------------CCCHHHHHHHHHHHhc
Q 011082 464 --------------------EEGVPELKVGLRMLVN 479 (494)
Q Consensus 464 --------------------g~gI~~L~~~I~~~l~ 479 (494)
..|++.|+..+.++|.
T Consensus 243 el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~ 278 (363)
T 1jal_A 243 EIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278 (363)
T ss_dssp HGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC
Confidence 3678888888877764
No 27
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=9.3e-19 Score=158.19 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=112.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+++|.+|||||||+++|++.... .+ ..|.......+.+++..+.++||||.... ...+...+..+|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~~d 76 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV--TT-IPTIGFNVETVTYKNLKFQVWDLGGLTSI-------RPYWRCYYSNTD 76 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--CC-CCCSSEEEEEEEETTEEEEEEEECCCGGG-------GGGGGGGCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--Cc-CCcCccceEEEEECCEEEEEEECCCChhh-------hHHHHHHhccCC
Confidence 457999999999999999999876432 11 23445555667777889999999998642 222334567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc---CCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~---~~~~ii~I 459 (494)
++++|+|+++ ..++.....++..+... ....+.|+++|+||+|+... .+..+.+.... .+.+++++
T Consensus 77 ~ii~v~d~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (171)
T 1upt_A 77 AVIYVVDSCD-------RDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148 (171)
T ss_dssp EEEEEEETTC-------CTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHhc-hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence 9999999987 34566655555544332 12357899999999999764 33333332211 24479999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.|+++++++|.+.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 149 SATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 28
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.79 E-value=8e-19 Score=159.57 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=113.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +...+...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH-------HHHHHHHHhcCC
Confidence 3799999999999999999997755444445555566666777776 5789999999754 223344667899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++. ..+.....++.++..... .+.|+++|+||+|+.+.. +....+.... +.+++++|
T Consensus 88 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 157 (179)
T 2y8e_A 88 TVAVVVYDITNT-------NSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETS 157 (179)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEEEB
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHHHHHHHHHc-CCeEEEEe
Confidence 999999999862 345555556655554322 368999999999986431 2222222332 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 158 a~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987654
No 29
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.79 E-value=5.6e-19 Score=163.53 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=107.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC---------------------------------
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--------------------------------- 352 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--------------------------------- 352 (494)
..+|+|+|.+|||||||+++|++........+.++.+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 34799999999999999999998754322222222223333444443
Q ss_pred ------cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCC
Q 011082 353 ------IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR 426 (494)
Q Consensus 353 ------~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~ 426 (494)
..+.++||||..+ +.......+..+|++++|+|+++. .....+..++.++..+. ..
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~D~~~~-------~s~~~~~~~~~~i~~~~----~~ 148 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQER-------YASIVPLYYRGATCAIVVFDISNS-------NTLDRAKTWVNQLKISS----NY 148 (208)
T ss_dssp CTTTCEEEEEEEECTTGGG-------CTTTHHHHHTTCSEEEEEEETTCH-------HHHHHHHHHHHHHHHHS----CC
T ss_pred cCccceeEEEEEECCCcHH-------HHHHHHHHhcCCCEEEEEEECCCH-------HHHHHHHHHHHHHHhhC----CC
Confidence 5789999999754 222345667889999999999872 34555566666665432 48
Q ss_pred CEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 427 PSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 427 P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++|+||+|+... .+....+.+. .+.+++++||+++.|+++++++|.+.+.+
T Consensus 149 piilv~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 149 IIILVANKIDKNKFQVDILEVQKYAQD-NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EEEEEEECTTCC-CCSCHHHHHHHHHH-TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCcccccCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999994321 1222223333 35789999999999999999999887654
No 30
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-18 Score=157.19 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=108.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++..... .+..++-......+..++ ..+.++||||..+ +.......+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ-------FPAMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS-------CHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccccEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHhcccC
Confidence 379999999999999999999864322 122221112222333443 5689999999865 233345567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++. ........++..+..+.....+.|+++|+||+|+.... .....+.... +.+++++|
T Consensus 76 ~~~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 147 (172)
T 2erx_A 76 HAFILVYSITSR-------QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW-KCAFMETS 147 (172)
T ss_dssp SEEEEEEETTCH-------HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEECB
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-CCeEEEec
Confidence 999999999862 34455555666665554334578999999999986431 2223333333 46899999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|+++.|+++++++|.+.+...
T Consensus 148 a~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 148 AKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTTTBSHHHHHHHHHHTCCSS
T ss_pred CCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999999877653
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.79 E-value=1.3e-18 Score=158.96 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=111.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+ +.......+..+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG-------GGGGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh-------hhhhhHHHhccC
Confidence 4799999999999999999998754433223333333344455554 5789999999754 223344567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ...+.....++.++..+. ..+.|+++|+||+|+... .+....+.+. .+.+++++|
T Consensus 86 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S 155 (181)
T 2efe_B 86 AAAIIVFDVTN-------QASFERAKKWVQELQAQG--NPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NGLFFMETS 155 (181)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCEEEECC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccccCCHHHHHHHHHH-cCCEEEEEE
Confidence 99999999986 244556666666665542 236899999999999643 2223333333 357899999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.|+++++++|.+.+...+
T Consensus 156 a~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC---
T ss_pred CCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999998876544
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.79 E-value=7.8e-19 Score=157.99 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=110.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+. .......+..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF-------DAITKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT-------TCCCHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH-------HHHHHHHhcCC
Confidence 3799999999999999999998654333233333444455566655 57899999997542 22234567789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++. .+......+..++..+. .+.|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 79 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 147 (168)
T 1z2a_A 79 QACVLVFSTTDR-------ESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-KLRFYRTS 147 (168)
T ss_dssp CEEEEEEETTCH-------HHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEECB
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEEEe
Confidence 999999999872 34455555666655443 47899999999998652 22233344433 56899999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|+++++++|.+.+.
T Consensus 148 a~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 148 VKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 33
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=166.28 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=110.1
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
....+|+|+|.+|||||||+++|++.. ....+..|+.+.....+.+++ ..+.+|||||..+... + ...++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~ 89 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----L---RPLCY 89 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----S---GGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----H---hHhhc
Confidence 345589999999999999999999865 445666666655556666766 4677999999865322 1 22346
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChH----------------HHH
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVY 444 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----------------e~~ 444 (494)
..+|++++|+|+++ ..++..+. .+..++..+. .+.|+++|+||+|+.... +..
T Consensus 90 ~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 90 TNTDIFLLCFSVVS-------PSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred CCCcEEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 78999999999987 24445544 4555555443 378999999999997521 223
Q ss_pred HHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 445 EELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 445 ~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
..+.+.+...+++++||+++.|+++++++|.+.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 33444443348999999999999999999988776543
No 34
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=8.7e-19 Score=157.75 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=110.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+ +.......+..+|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~d 77 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER-------FASLAPXYYRNAQ 77 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChh-------hhhhhhhhhccCc
Confidence 699999999999999999998754333333333444445555655 5789999999754 2233456678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-------HHHHHHHHHHcCCCCEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-------EEVYEELERRVQGVPIYP 458 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-------~e~~~~L~~~~~~~~ii~ 458 (494)
++++|+|+++ ..+......++.++.... ..+.|+++|+||+|+... .+....+.+.. +.++++
T Consensus 78 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~ 147 (170)
T 1ek0_A 78 AALVVYDVTK-------PQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK-GLLFFE 147 (170)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-TCEEEE
T ss_pred EEEEEEecCC-------hHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-CCEEEE
Confidence 9999999987 244556666666665442 246899999999998643 12233333333 568999
Q ss_pred EEcccCCCHHHHHHHHHHHhc
Q 011082 459 VCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~ 479 (494)
+||+++.|+++++++|.+.+.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987664
No 35
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=6.4e-19 Score=163.70 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=114.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+|+|.+|||||||+++|++......+|.. |.......+...+..+.+|||||..+. ...+..++..+|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d 88 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKF-------RGLWETYYDNID 88 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGG-------GGGGGGGCTTCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhH-------HHHHHHHHhcCC
Confidence 348999999999999999999987554423322 344555566667789999999998652 222334567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc------ccCCCCEEEEEeCCCcCCh---HHHHHHHHHH----cC
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE------GLSDRPSLVVANKIDEDGA---EEVYEELERR----VQ 452 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~------~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~----~~ 452 (494)
++|+|+|+++ ..++.....++.++..... .....|+|+|+||+|+... +++.+.+... ..
T Consensus 89 ~ii~v~D~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 89 AVIFVVDSSD-------HLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH 161 (199)
T ss_dssp EEEEEEETTC-------GGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS
T ss_pred EEEEEEECCc-------HHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC
Confidence 9999999987 3556666666665543211 0127899999999999865 3433333211 13
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+.++++|||+++.||++++++|.+.+.+..
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 567999999999999999999998876543
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.79 E-value=5.8e-19 Score=160.83 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=116.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++.. ...++..|+.......+.+++ ..+.++||||..+. .......+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF-------GAMREQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT-------SCCHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHHhhC
Confidence 379999999999999999999863 345566665555556666666 57889999997652 22234567789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ......+..++.++.... ...+.|+++|+||+|+... .+....+... .+.+++++|
T Consensus 82 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~S 152 (181)
T 2fn4_A 82 HGFLLVFAIND-------RQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-HHVAYFEAS 152 (181)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECB
T ss_pred CEEEEEEeCCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHH-cCCeEEEec
Confidence 99999999987 244555656655553322 2247899999999999753 2223334333 367899999
Q ss_pred cccCCCHHHHHHHHHHHhcccCCc
Q 011082 461 AVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
|+++.|+++++++|.+.+.+....
T Consensus 153 a~~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999888765443
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.79 E-value=1.9e-18 Score=155.70 Aligned_cols=156 Identities=14% Similarity=0.133 Sum_probs=109.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..........+.+++ ..+.++||||+.. +.......+..+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~ 79 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER-------FRALAPMYYRGS 79 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchh-------hhcccHhhCcCC
Confidence 4799999999999999999998753221111111122223344444 6789999999854 222344567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..+......++..+..+. ....|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 80 ~~~i~v~d~~~-------~~s~~~~~~~~~~l~~~~--~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 149 (170)
T 1z0j_A 80 AAAIIVYDITK-------EETFSTLKNWVRELRQHG--PPSIVVAIAGNKCDLTDVREVMERDAKDYADSI-HAIFVETS 149 (170)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHS--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECB
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECCccccccccCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999987 244556666666666542 246789999999999653 23333444443 57899999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|+++|++.|.+.+.
T Consensus 150 a~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 150 AKNAININELFIEISRRIP 168 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 38
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.79 E-value=1.4e-18 Score=159.09 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=115.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.++||||..+ +.......+..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc-------cHHHHHHHhccC
Confidence 379999999999999999999865 344566666555555566666 4789999999764 333445667889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ...+.....+..++..+.. ..+.|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 91 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 161 (187)
T 2a9k_A 91 EGFLCVFSITE-------MESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-NVNYVETS 161 (187)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEECC
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHc-CCeEEEeC
Confidence 99999999987 2445556666666655432 236899999999998653 12222333333 56899999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|+++.|+++++++|.+.+.+.
T Consensus 162 a~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=3.9e-19 Score=162.00 Aligned_cols=158 Identities=23% Similarity=0.226 Sum_probs=114.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+++|.+|||||||+++|++.......++.+|.+.....+.+++..+.+|||||..+.... +...+..+|
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM-------RARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS-------CCSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH-------HHHHHhhCC
Confidence 4589999999999999999999887666666777777777778888889999999998653222 223456789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHHHHc---C----CCCE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERRV---Q----GVPI 456 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~~~~---~----~~~i 456 (494)
++++|+|+++. .....+.. +..+. ..+.|+++|+||+|+... ++....+.+.. . ..++
T Consensus 81 ~~i~v~d~~~~-------~~~~~~~~-l~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 81 IVILVVAADDG-------VMPQTVEA-INHAK-----AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp EEEEEEETTCC-------CCHHHHHH-HHHHG-----GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred EEEEEEECCCC-------CcHHHHHH-HHHHH-----hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccE
Confidence 99999998762 22233322 22221 136899999999999863 23333332211 0 1479
Q ss_pred EEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 457 YPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+++||+++.|+++|+++|.+.+.....
T Consensus 148 ~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 148 CKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999999999988876544
No 40
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.78 E-value=6.5e-19 Score=159.09 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=107.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+.... ....+..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL-------GPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh-------HHHHhccC
Confidence 4799999999999999999998754333333333334445556655 46889999997542221 12235678
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..+...+..++.++..+.. ...|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 80 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 149 (170)
T 1z08_A 80 NGAILVYDITD-------EDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESV-GAKHYHTS 149 (170)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEEEB
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccccCHHHHHHHHHHc-CCeEEEec
Confidence 99999999987 2445566666666654432 36899999999999653 12233344433 57899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 150 AKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999887653
No 41
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.78 E-value=1.8e-18 Score=155.04 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=111.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++.... ..+..++.+.....+.+++ ..+.++||||..+ +.......+..+|
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~~ 76 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ-------FASMRDLYIKNGQ 76 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHhccCC
Confidence 7999999999999999999976432 3344444444445556665 4589999999754 2233445678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..+......+..++..+.. ..+.|+++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 77 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 147 (167)
T 1kao_A 77 GFILVYSLVN-------QQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEW-GCPFMETSA 147 (167)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSCEEEECT
T ss_pred EEEEEEeCCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHh-CCCEEEecC
Confidence 9999999987 2345555556555544321 247899999999998643 22233344333 568999999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
+++.|+++++++|.+.+.+
T Consensus 148 ~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 148 KSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999887754
No 42
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=4.4e-19 Score=166.80 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=116.3
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
...+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +......++.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~ 91 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER-------FRTITTAYYR 91 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG-------GTCCCHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhc
Confidence 445899999999999999999998765444455555556666777777 6789999999754 2222456678
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~I 459 (494)
.+|++++|+|+++. ..+..+..++.++..+.. ...|+++|+||+|+... .+....+.+.+ +.+++++
T Consensus 92 ~~d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~ 161 (213)
T 3cph_A 92 GAMGIILVYDVTDE-------RTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKEL-GIPFIES 161 (213)
T ss_dssp TCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHH-TCCEEEC
T ss_pred cCCEEEEEEECCCH-------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHc-CCEEEEE
Confidence 89999999999872 344555566666554432 36899999999999532 22333444443 5689999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.|+++++++|.+.+.+
T Consensus 162 Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 162 SAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp BTTTTBSSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887754
No 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=9.8e-19 Score=157.17 Aligned_cols=155 Identities=25% Similarity=0.297 Sum_probs=109.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|.+|||||||+++|++.... . + ..|.......+.+.+..+.+|||||..+ +...+...+..+|++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-C-C-CCCSSCCEEEEECSSCEEEEEECCCCGG-------GHHHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-c-c-cCcCceeEEEEEECCEEEEEEEcCCChh-------hHHHHHHHhccCCEE
Confidence 6899999999999999999875432 1 1 2244455566777778999999999854 223334567889999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc---CCCCEEEEEc
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVCA 461 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~---~~~~ii~ISA 461 (494)
++|+|+++ ..++.....++.++... ....+.|+++|+||+|+... .+..+.+.... .+.+++++||
T Consensus 72 i~v~d~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (164)
T 1r8s_A 72 IFVVDSND-------RERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 143 (164)
T ss_dssp EEEEETTC-------GGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred EEEEECCC-------HHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEccc
Confidence 99999987 24566555555554332 12347899999999999764 23222222111 2346899999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
+++.|+++++++|.+.+.+
T Consensus 144 ~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 144 TSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999987754
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=1.1e-18 Score=159.16 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=108.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC---cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~---~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..... ......+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 81 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYRG 81 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhhc
Confidence 4799999999999999999998754433334444556666666652 578999999975421 122334568
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc--ccCCCCEEEEEeCCCcCCh-----HHHHHHHHHHcCCCCE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPI 456 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IlVlNKiDl~~~-----~e~~~~L~~~~~~~~i 456 (494)
+|++++|+|+++. ........+..++..+.. .....|+++|+||+|+... .+....+.+.....++
T Consensus 82 ~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 82 ADCCVLVYDVTNA-------SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp CCEEEEEEETTCH-------HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred CCEEEEEEECCCh-------HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 9999999999872 445555666666554431 1246899999999999532 2333445443456789
Q ss_pred EEEEcccCCCHHHHHHHHHHHhcc
Q 011082 457 YPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+++||+++.|+++++++|.+.+.+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 45
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=5.4e-19 Score=169.42 Aligned_cols=167 Identities=23% Similarity=0.366 Sum_probs=112.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccc--hhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL--GHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L--~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++......+++++|.+.....+.+.+..+.++||||+.+........ ...+......+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 109 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHIN 109 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccc
Confidence 4799999999999999999998876667788999888888888888899999999996533221110 11122335667
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----H---HHHHHHHHc-CCCCE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----E---VYEELERRV-QGVPI 456 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e---~~~~L~~~~-~~~~i 456 (494)
|++|+|+|+++... ........++..+... ....|+++|+||+|+.... + ....+.... ...++
T Consensus 110 d~~i~v~d~~~~~s-----~~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 110 GVILFIIDISEQCG-----LTIKEQINLFYSIKSV---FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp EEEEEEEETTCTTS-----SCHHHHHHHHHHHHTC---C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred cEEEEEEecccccC-----cchHHHHHHHHHHHHh---hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999987311 1122333444444332 2378999999999997542 1 122232322 11689
Q ss_pred EEEEcccCCCHHHHHHHHHHHhccc
Q 011082 457 YPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+++||+++.|+++++++|.+.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544
No 46
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.78 E-value=2.2e-18 Score=156.62 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=110.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+.++.+.....+.+++ ..+.++||||..+ +.......+..+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 88 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYYRGA 88 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG-------TCHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH-------hhhhHHHHhccC
Confidence 4799999999999999999998754322222222233344455554 5789999999754 333455678899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++. .....+..++.++..+.. .+.|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 89 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 158 (179)
T 1z0f_A 89 AGALMVYDITRR-------STYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEEN-GLLFLEAS 158 (179)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECC
T ss_pred CEEEEEEeCcCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEEe
Confidence 999999999872 445555666666655432 36899999999999642 12223333333 57899999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|+++++++|.+.+.
T Consensus 159 a~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp TTTCTTHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 47
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=6.3e-19 Score=162.46 Aligned_cols=158 Identities=23% Similarity=0.411 Sum_probs=118.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhH-HHHH--Hh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF-LRHI--ER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~f-l~~i--~~ 383 (494)
.+|+|+|++|||||||+++|++....+..++++|.++..+.+.+++..+.++||||+....... ....+ ...+ ..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEIIARDYIINEK 85 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS--HHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc--HHHHHHHHHHhccC
Confidence 3799999999999999999999877778888889999999999988999999999987632110 00111 1222 34
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~IS 460 (494)
+|++++|+|.++ ......+..++.. .+.|+|+|+||+|+.... ...+.+.+.+ +.+++++|
T Consensus 86 ~~~~i~v~d~~~----------~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 149 (188)
T 2wjg_A 86 PDLVVNIVDATA----------LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS 149 (188)
T ss_dssp CSEEEEEEEGGG----------HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred CCEEEEEecchh----------HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHh-CCCeEEEE
Confidence 899999999875 3444455555433 368999999999986432 1234444444 46899999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.|+++++++|.+.+.+..
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999987765
No 48
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.78 E-value=1.8e-18 Score=155.64 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=108.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+ +.......+..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER-------YHSLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------hhhhhHHhccCC
Confidence 3799999999999999999997643322112112222233344443 6789999999754 233345667889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..+......++.++..+. ....|+++|+||+|+... .+....+... .+.+++++|
T Consensus 80 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S 149 (170)
T 1r2q_A 80 QAAIVVYDITN-------EESFARAKNWVKELQRQA--SPNIVIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETS 149 (170)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccccCHHHHHHHHHH-cCCeEEEEe
Confidence 99999999987 244556666666665442 236889999999998642 1222333333 357899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++|+++|.+.+.+
T Consensus 150 a~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999887643
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.1e-18 Score=159.29 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=109.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccc-cceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHY-SFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~-~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|.+|||||||+++|++.......+ +.++.+.....+.+++ ..+.+|||||..+. .......+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF-------RSVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHccC
Confidence 479999999999999999999876543333 3333333344455665 47899999997542 1223344678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++. .....+..++.++..+.. ...|+++|+||+|+... .+....+.+.. +.+++++
T Consensus 84 ~d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (180)
T 2g6b_A 84 AHALLLLYDVTNK-------ASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFMET 153 (180)
T ss_dssp CSEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEEEC
T ss_pred CCEEEEEEECCCH-------HHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEEE
Confidence 9999999999872 344555566666655432 47899999999999752 22233344433 5689999
Q ss_pred EcccCCCHHHHHHHHHHHhcccC
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
||+++.|+++++++|.+.+.+..
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998876543
No 50
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.78 E-value=5.2e-19 Score=175.40 Aligned_cols=156 Identities=21% Similarity=0.348 Sum_probs=116.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccc--cccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE--NRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~--~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.||||||||+|+|++....+++++++|.++..+.+.. +..+.++||||+...... ...+...++.. ..+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc-CCC
Confidence 47999999999999999999998888999999999998888877 789999999998763211 11111122111 258
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA 461 (494)
|++++|+|+++ .+....+..++.. ...|+|+|+||+|+.... ...+.+.+.+ +.+++++||
T Consensus 82 d~vi~V~D~t~----------~e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~SA 145 (272)
T 3b1v_A 82 DSILNVVDATN----------LERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-GVPVVATSA 145 (272)
T ss_dssp SEEEEEEEGGG----------HHHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECBT
T ss_pred CEEEEEecCCc----------hHhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-CCCEEEEEc
Confidence 99999999876 2333344444433 368999999999985321 1234455554 578999999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
+++.|+++|++.|.+.+..
T Consensus 146 ~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTTBSHHHHHHHHHHSCTT
T ss_pred cCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987654
No 51
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.78 E-value=1.2e-18 Score=163.55 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=116.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+... ....++..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-------ITSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHhccCC
Confidence 4799999999999999999998765544445555555566677766 4789999999765222 233456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ...+..+..++.++..+. ....|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 82 d~vilv~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 151 (206)
T 2bcg_Y 82 HGIIIVYDVTD-------QESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN-KMPFLETS 151 (206)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCCEEECC
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeEEEEe
Confidence 99999999987 245566666666665543 236899999999999753 22233344333 57899999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|+++.|+++++++|.+.+.+.
T Consensus 152 a~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998877543
No 52
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=6.7e-19 Score=162.79 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=112.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +......++..+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER-------FRTLTPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG-------GCCSHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHHHhccC
Confidence 4799999999999999999998754433333333444455555555 6789999999754 222345667889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA 461 (494)
|++++|+|+++. .....+..++.++..+. .....|+++|+||+|+.... +....+.+.. +.+++++||
T Consensus 89 d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa 159 (195)
T 1x3s_A 89 QGVILVYDVTRR-------DTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKENREVDRNEGLKFARKH-SMLFIEASA 159 (195)
T ss_dssp CEEEEEEETTCH-------HHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT-TCEEEECCT
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhc-CcCCCcEEEEEECCcCcccccCHHHHHHHHHHc-CCEEEEecC
Confidence 999999999872 34445555555554432 12468999999999995431 2222333333 578999999
Q ss_pred ccCCCHHHHHHHHHHHhcccC
Q 011082 462 VLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+++.|+++++++|.+.+.+..
T Consensus 160 ~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 160 KTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHTSG
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999886543
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.78 E-value=3.7e-18 Score=159.38 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=115.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.++||||..+ +.......+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh-------hHHHHHHHHhhC
Confidence 479999999999999999999865 345666666666666667766 4789999999765 233344567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ...+.....+..++..+.. ....|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 87 ~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 157 (206)
T 2bov_A 87 EGFLCVFSITE-------MESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-NVNYVETS 157 (206)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEEC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHh-CCeEEEEe
Confidence 99999999987 2445566666666655432 237899999999999653 12222233333 46899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 158 a~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 54
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=7.1e-19 Score=166.00 Aligned_cols=160 Identities=16% Similarity=0.211 Sum_probs=115.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +.......+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~ 98 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSYYRS 98 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGGSTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHHhc
Confidence 34799999999999999999998755444444444555556667776 5789999999754 22233455678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ..++..+..++.++..+.. ...|+|+|+||+|+... .+....+.+.. +.+++++
T Consensus 99 ~d~~i~v~D~~~-------~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 168 (201)
T 2ew1_A 99 ANALILTYDITC-------EESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEAQ-DMYYLET 168 (201)
T ss_dssp CSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCCEEEC
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCEEEEE
Confidence 999999999987 2445555666666655432 36899999999999642 22233333333 5789999
Q ss_pred EcccCCCHHHHHHHHHHHhcccC
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
||+++.|+++++++|.+.+.+..
T Consensus 169 Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 169 SAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988876543
No 55
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=161.25 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=117.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|||.+|||||||+++|++........+.++.+.....+.+++ ..+.+|||+|..... .......+..+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG------GWLRDHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch------hhhHHHhhccC
Confidence 4799999999999999999987654445556666666677777776 467889999985411 01122346789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..++.++..... ....|+|+|+||+|+... .+....+.+.+ +.+++++|
T Consensus 98 d~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~S 168 (195)
T 3cbq_A 98 DAFLIVFSVTD-------RRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTL-SCKHIETS 168 (195)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEEEEEB
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHHHHHHHHHh-CCEEEEEc
Confidence 99999999987 2455566666666654421 236899999999999743 12233444444 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.|++++++.|.+.+....
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998876543
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.5e-18 Score=161.51 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=109.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC--cccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA--VGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~--i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
.+|+|+|.+|||||||+++|++.... ......+|. ....+.+++ ..+.++||||..+ +.......+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNELHKFLIWDTAGQER-------FHSLAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSSEEEEEEEEECCSGG-------GGGGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCEEEEEEEEcCCCchh-------hHhhhHHhhc
Confidence 47999999999999999999987532 222222222 222333333 6789999999754 2233456678
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYP 458 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ 458 (494)
.+|++++|+|+++ ...+..+..++.++..+. ....|+++|+||+|+... .+....+.+.. +.++++
T Consensus 95 ~~d~iilV~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~ 164 (192)
T 2fg5_A 95 GSAAAVIVYDITK-------QDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREVPLKDAKEYAESI-GAIVVE 164 (192)
T ss_dssp TCSEEEEEEETTC-------THHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT-TCEEEE
T ss_pred cCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEEEE
Confidence 8999999999987 345666677777766543 236899999999999642 22233333333 578999
Q ss_pred EEcccCCCHHHHHHHHHHHhcccCC
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+||+++.|++++++.|.+.+.+..+
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 165 TSAKNAINIEELFQGISRQIPPLDP 189 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC----
T ss_pred EeCCCCcCHHHHHHHHHHHHHhhCC
Confidence 9999999999999999998765443
No 57
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.78 E-value=1.6e-18 Score=160.97 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=111.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+. .......+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF-------RSITRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT-------SCCCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh-------hhhHHHHhccC
Confidence 3799999999999999999998765444444445555556666766 57899999997542 22234567789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ......+..++.++..+. ..+.|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 95 d~ii~v~d~~~-------~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 164 (191)
T 2a5j_A 95 AGALLVYDITR-------RETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-GLIFMETS 164 (191)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEEC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCCccccCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999987 244555566666665442 237899999999999642 22233343333 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 165 a~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 58
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=1.3e-18 Score=161.11 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=110.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+..++ ..+.++||||..... ......+..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR-------TITTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC-------CSGGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh-------hhHHHhccCC
Confidence 4799999999999999999998754332222222223334444444 578999999975522 2234456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ...+..+..++.++..+. ..+.|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 96 d~ii~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 165 (189)
T 2gf9_A 96 MGFLLMYDIAN-------QESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPAEDGRRLADDL-GFEFFEAS 165 (189)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEECB
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCHHHHHHHHHHc-CCeEEEEE
Confidence 99999999987 244555666666665542 247899999999999653 22334444444 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 166 a~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 59
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.78 E-value=2.7e-18 Score=153.42 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=111.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++... ...+..++.......+.+++ ..+.++||||..+ +.......+..+|
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 76 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRTGE 76 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS-------CCHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCEEEEEEEEECCCchh-------hhHHHHHhhccCC
Confidence 699999999999999999997643 23344444334444555555 4578999999764 2223345678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEEEcc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~ISA~ 462 (494)
++++|+|+++ .........+..++..+.. ..+.|.++|+||+|+... .+....+.+.+ +.+++++||+
T Consensus 77 ~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 147 (166)
T 2ce2_X 77 GFLCVFAINN-------TKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTVESRQAQDLARSY-GIPYIETSAK 147 (166)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-TCCEEEECTT
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcccCHHHHHHHHHHc-CCeEEEecCC
Confidence 9999999886 2445555666666655432 236899999999998753 23334444444 5689999999
Q ss_pred cCCCHHHHHHHHHHHhcc
Q 011082 463 LEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~ 480 (494)
++.|+++++++|.+.+.+
T Consensus 148 ~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987753
No 60
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=8.1e-19 Score=163.47 Aligned_cols=152 Identities=23% Similarity=0.321 Sum_probs=111.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|++.... .+ .+|..+..+.+.+++..+.++||||...... .+...+..+|+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 93 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARR-------LWKDYFPEVNG 93 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTT-------SGGGGCTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHH-------HHHHHHhcCCE
Confidence 37999999999999999999986532 22 3466677788888889999999999865221 12234568999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc--------------C
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV--------------Q 452 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~--------------~ 452 (494)
+++|+|+++ ..++.....++.++.... ...+.|+++|+||+|+..... .+++.+.+ .
T Consensus 94 ~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 94 IVFLVDAAD-------PERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVS-EAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp EEEEEETTC-------GGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTCSSCCC---CCSSC
T ss_pred EEEEEECCC-------hHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCCC-HHHHHHHhCCccccccccccccc
Confidence 999999987 345666666666554321 234789999999999975211 12233332 2
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
..+++++||++++|+++++++|.+.
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhh
Confidence 3468999999999999999998754
No 61
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=163.03 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=113.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+|+|.+|||||||+++|++.......+ .+|.......+.+++..+.++||||..+. ...+..++..+|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d 92 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSSLSFTVFDMSGQGRY-------RNLWEHYYKEGQ 92 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSSCEEEEEEECCSTTT-------GGGGGGGGGGCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECCEEEEEEECCCCHHH-------HHHHHHHHhcCC
Confidence 3579999999999999999999875333333 34556667778888899999999997652 223345567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhccc--CCCCEEEEEeCCCcCCh---HHHHHHHH-HHc--CCCCEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGL--SDRPSLVVANKIDEDGA---EEVYEELE-RRV--QGVPIY 457 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l--~~~P~IlVlNKiDl~~~---~e~~~~L~-~~~--~~~~ii 457 (494)
++++|+|+++ ..++.....++.++.... .+ .+.|+++|+||+|+... ++..+.+. ..+ .+.+++
T Consensus 93 ~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 2h57_A 93 AIIFVIDSSD-------RLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHIC 164 (190)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEE
Confidence 9999999986 233455555555544321 12 47899999999999754 23222222 111 245799
Q ss_pred EEEcccCCCHHHHHHHHHHHhccc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
++||+++.|+++++++|.+.+.+.
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC---
T ss_pred EccCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 62
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=4.1e-19 Score=174.70 Aligned_cols=157 Identities=22% Similarity=0.374 Sum_probs=118.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccc--ccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~--~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+|+|++....+++++++|.+...+.+...+..+.++||||+....... ..+...++.. ..+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 84 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GDA 84 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh-cCC
Confidence 3799999999999999999999887789999999999999999888999999999997632211 1111222211 478
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~~~~~ii~ISA 461 (494)
|++++|+|+++. +....+..++.. ...|+|+|+||+|+..... ..+.+.+.+ +.+++++||
T Consensus 85 d~ii~V~D~t~~----------~~~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~SA 148 (258)
T 3a1s_A 85 DLVILVADSVNP----------EQSLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFTSS 148 (258)
T ss_dssp SEEEEEEETTSC----------HHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEECCT
T ss_pred CEEEEEeCCCch----------hhHHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEEEe
Confidence 999999998862 222334444433 2689999999999854221 134555555 579999999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
+++.|+++|++.|.+.+..
T Consensus 149 ~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp TTCTTHHHHHHHHHHHHHS
T ss_pred eCCcCHHHHHHHHHHHhhc
Confidence 9999999999999988753
No 63
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=1e-18 Score=184.45 Aligned_cols=161 Identities=22% Similarity=0.246 Sum_probs=107.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCccc--cccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE--NRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~--~~~L~~~fl~~i~~ 383 (494)
++|+|||.||||||||+|+|++.+.. +.+++++|.+...+.+.+++..+.++||||+...... ...+......+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 58999999999999999999998654 6899999999999999999999999999998763221 11123345667889
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-HHHH-HHHHHHcCCCCEEEEEc
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-EEVY-EELERRVQGVPIYPVCA 461 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-~e~~-~~L~~~~~~~~ii~ISA 461 (494)
||++|+|+|+.... ... . ..+...+.. .++|+++|+||+|+... .... ..+.+ +.-.++++|||
T Consensus 82 ad~il~V~D~~~~~------~~~-d-~~i~~~l~~-----~~~p~ilv~NK~D~~~~~~~~~~~~~~~-lg~~~~~~iSA 147 (439)
T 1mky_A 82 ADLVLFVVDGKRGI------TKE-D-ESLADFLRK-----STVDTILVANKAENLREFEREVKPELYS-LGFGEPIPVSA 147 (439)
T ss_dssp CSEEEEEEETTTCC------CHH-H-HHHHHHHHH-----HTCCEEEEEESCCSHHHHHHHTHHHHGG-GSSCSCEECBT
T ss_pred CCEEEEEEECCCCC------CHH-H-HHHHHHHHH-----cCCCEEEEEeCCCCccccHHHHHHHHHh-cCCCCEEEEec
Confidence 99999999987631 111 1 222222322 26899999999998643 1111 22221 22236899999
Q ss_pred ccCCCHHHHHHHHHHHhccc
Q 011082 462 VLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~ 481 (494)
++|.|+++|++.|.+.+.+.
T Consensus 148 ~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcccc
Confidence 99999999999999888643
No 64
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.78 E-value=3.6e-18 Score=156.00 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=108.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++..... +..|+.+.....+.+++ ..+.+|||||..+ ..++..+|
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~d 74 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWAD 74 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhCC
Confidence 79999999999999999999865432 33333333345556665 5688999999754 24567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc-cCCCCEEEEEeCCCcCC------hHHHHHHHHHHcCCCCEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDG------AEEVYEELERRVQGVPIYP 458 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IlVlNKiDl~~------~~e~~~~L~~~~~~~~ii~ 458 (494)
++++|+|+++ ..++..+..+...+..+... ..+.|+++|+||+|+.. ..+....+.+...+.++++
T Consensus 75 ~~ilv~D~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 75 AVIFVFSLED-------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 9999999987 24556666655455443221 24689999999999831 1222333444444578999
Q ss_pred EEcccCCCHHHHHHHHHHHhccc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+||+++.|++++++.|.+.+.+.
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998877553
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=3.8e-19 Score=163.25 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=91.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+.++.+.....+.+++ ..+.++||||..+... .....+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHhcC
Confidence 4799999999999999999997654434444445555556666776 6789999999765221 122346789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..++.++..+. ..+.|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 82 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 151 (183)
T 2fu5_C 82 MGIMLVYDITN-------EKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETS 151 (183)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-TCEEEECC
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-CCeEEEEe
Confidence 99999999987 245566666666665542 236899999999999752 22233444443 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|++++++.|.+.+.+
T Consensus 152 a~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIKA 171 (183)
T ss_dssp C---CCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 66
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=161.13 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=107.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
...+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+ +...+...+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 99 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER-------FRSIAKSYFR 99 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTT-------CHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc-------hhhhHHHHHh
Confidence 345899999999999999999998754322222222333444555655 5689999999754 3334556788
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----------HHHHHHHHHHcC
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------EEVYEELERRVQ 452 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----------~e~~~~L~~~~~ 452 (494)
.+|++++|+|+++. .....+..++..+..+.. .+.|+++|+||+|+... .+....+....
T Consensus 100 ~~d~iilv~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~- 169 (199)
T 2p5s_A 100 KADGVLLLYDVTCE-------KSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY- 169 (199)
T ss_dssp HCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH-
T ss_pred hCCEEEEEEECCCh-------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccccccccCHHHHHHHHHHc-
Confidence 99999999999862 344555556555554321 36899999999998631 12223333333
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+.+++++||+++.|+++++++|.+.+.+
T Consensus 170 ~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 170 GALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999988754
No 67
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.77 E-value=1.8e-18 Score=160.42 Aligned_cols=159 Identities=20% Similarity=0.279 Sum_probs=111.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+|+|.+|||||||+++|++..... .+ ..|.......+...+..+.++||||..+ +...+...+..+|
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d 92 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNE-DM-IPTVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYCRGVS 92 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SC-CCCCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHHTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCC-cc-CCCCceeEEEEEeCCEEEEEEECCCCHh-------HHHHHHHHHccCC
Confidence 3479999999999999999999764432 11 2344444555667778999999999754 2223445678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc---CCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~---~~~~ii~I 459 (494)
++++|+|+++ ...+.....++.++... ....+.|+++|+||+|+... .+..+.+.... .+.++++|
T Consensus 93 ~ii~v~D~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (188)
T 1zd9_A 93 AIVYMVDAAD-------QEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSI 164 (188)
T ss_dssp EEEEEEETTC-------GGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEE
Confidence 9999999987 24566666555555432 12357899999999999753 22222222111 23468999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|+++++++|.+.+.+.
T Consensus 165 SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 165 SCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CTTTCTTHHHHHHHHHHTCC--
T ss_pred ECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999877553
No 68
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=162.00 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=112.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +.......+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 101 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER-------FRTITQSYYRS 101 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG-------GHHHHHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHHhh
Confidence 45799999999999999999997653322222222334455666666 5889999999754 23334566788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCC-CEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGV-PIYP 458 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~-~ii~ 458 (494)
+|++++|+|+++ ...+..+..++.++..+. ..+.|+|+|+||+|+... .+....+.+.+ +. ++++
T Consensus 102 ~d~iilv~D~~~-------~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 171 (201)
T 2hup_A 102 ANGAILAYDITK-------RSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY-DILCAIE 171 (201)
T ss_dssp CSEEEEEEETTB-------HHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCSEEEE
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHHc-CCCEEEE
Confidence 999999999987 244555666666665543 246899999999999652 22233444444 45 8999
Q ss_pred EEcccCCCHHHHHHHHHHHhcccCC
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+||+++.||++++++|.+.+.+...
T Consensus 172 ~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 172 TSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988765443
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=1.6e-18 Score=162.28 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=114.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||...... + ....+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS----L---GVAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC----S---CCGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH----h---HHHHHhCC
Confidence 4799999999999999999998765444344444555566666665 5789999999754221 1 22345679
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc--ccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~I 459 (494)
|++|+|+|+++. ..+..+..+..++..+.. ...+.|+++|+||+|+.... +....+.....+.+++++
T Consensus 82 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (207)
T 1vg8_A 82 DCCVLVFDVTAP-------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET 154 (207)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEEC
T ss_pred cEEEEEEECCCH-------HHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEE
Confidence 999999999872 344555556555554421 11368999999999997432 223334433456789999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|+++++++|.+.+.+.
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 155 SAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998877543
No 70
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.77 E-value=1.1e-18 Score=160.83 Aligned_cols=158 Identities=25% Similarity=0.229 Sum_probs=113.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+++|.+|||||||+++|++.. ...+. .|.......+.+++..+.++||||..+ +...+..++..+|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~d 87 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKS-------LRSYWRNYFESTD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETTEEEEEEEECCSHH-------HHTTGGGGCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCC
Confidence 3479999999999999999999875 33332 344455667777888999999999854 1222334567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHH---cCCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERR---VQGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~---~~~~~ii~I 459 (494)
++++|+|+++ ..++.....++.++... ....+.|+++|+||+|+.... +..+.+... ..+.+++++
T Consensus 88 ~ii~v~d~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1ksh_A 88 GLIWVVDSAD-------RQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC 159 (186)
T ss_dssp EEEEEEETTC-------GGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHhC-hhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEe
Confidence 9999999987 24566666665555432 123478999999999997642 222222111 124579999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|+++++++|.+.+.+.
T Consensus 160 Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 160 SAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999888654
No 71
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.77 E-value=2.6e-18 Score=160.67 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=111.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||+.. +......++..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-------YRTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh-------hcchHHHhhcCC
Confidence 4799999999999999999998754332222222333334445554 5789999999854 223344556789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ...+..+..++.++..+. ..+.|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 82 d~ii~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 151 (203)
T 1zbd_A 82 MGFILMYDITN-------EESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-GFEFFEAS 151 (203)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH-TCEEEECB
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCHHHHHHHHHHC-CCeEEEEE
Confidence 99999999987 244566666666665543 247899999999999753 23334444444 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 152 a~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 72
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.77 E-value=1.5e-18 Score=179.14 Aligned_cols=89 Identities=40% Similarity=0.748 Sum_probs=81.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC---------------------cceEEecCCCccC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---------------------IQITVADIPGLIK 365 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~---------------------~~~~l~DtPGli~ 365 (494)
.+|+|||.||||||||+|+|++..+.+++|+|+|+.|+.|.+.+++ ..+.++||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 3689999999999999999999877889999999999999887643 3589999999999
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCC
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLAS 395 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~ 395 (494)
+++.+.+++..|+.+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 998888899999999999999999999986
No 73
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.77 E-value=1.2e-18 Score=160.33 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=109.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+++|.+|||||||+++|++... .....|.......+.+++..+.++||||..+. ...+...+..+|
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d 90 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVINNTRFLMWDIGGQESL-------RSSWNTYYTNTE 90 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEETTEEEEEEEESSSGGG-------TCGGGGGGTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEECCEEEEEEECCCCHhH-------HHHHHHHhccCC
Confidence 34799999999999999999998754 22223444445667778889999999998552 222345567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc---CCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~---~~~~ii~I 459 (494)
++++|+|+++ ...+.....++.++.... ...+.|+++|+||+|+... +++.+.+.... .+.+++++
T Consensus 91 ~ii~v~D~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 162 (181)
T 2h17_A 91 FVIVVVDSTD-------RERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162 (181)
T ss_dssp EEEEEEETTC-------TTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence 9999999987 355666666665554321 1357899999999999763 23222221111 23478999
Q ss_pred EcccCCCHHHHHHHHHHH
Q 011082 460 CAVLEEGVPELKVGLRML 477 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~ 477 (494)
||+++.|+++++++|.+.
T Consensus 163 Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 163 CALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp BTTTTBTHHHHHHHHHTC
T ss_pred cCCCCcCHHHHHHHHHhh
Confidence 999999999999998753
No 74
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=5.3e-19 Score=159.24 Aligned_cols=155 Identities=18% Similarity=0.151 Sum_probs=98.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|.+|||||||+++|++.... ....+.+|.. ..+.+++ ..+.++||||..... .....++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR-------WLPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch-------hhhhhhhhh
Confidence 47999999999999999999976542 2333444432 2334444 578999999986522 122345678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ..++.....+..++..+. ...+.|+++|+||+|+... .+....+.... +.+++++
T Consensus 73 ~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 143 (166)
T 3q72_A 73 GDAYVIVYSVTD-------KGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF-DCKFIET 143 (166)
T ss_dssp CCEEEEEEETTC-------HHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT-TCEEEEC
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHHHHHHHHHh-CCcEEEe
Confidence 999999999987 345566666666665432 1247899999999998743 22233344433 5789999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.|+++++++|.+.+..
T Consensus 144 Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 75
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1e-18 Score=162.20 Aligned_cols=161 Identities=12% Similarity=0.150 Sum_probs=114.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
....+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +.......+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~ 93 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYY 93 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH
Confidence 3455899999999999999999998653322222222333344444443 6789999999643 333445667
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIY 457 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii 457 (494)
..+|++++|+|+++ ..++..+..++.++..+. ..+.|+++|+||+|+... .+....+.+.+ +.+++
T Consensus 94 ~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~ 163 (191)
T 3dz8_A 94 RGAMGFILMYDITN-------EESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL-GFDFF 163 (191)
T ss_dssp TTCCEEEEEEETTC-------HHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEE
T ss_pred ccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeEE
Confidence 88999999999987 245566666777766543 247899999999998643 23334444444 56899
Q ss_pred EEEcccCCCHHHHHHHHHHHhccc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
++||+++.|++++++.|.+.+.+.
T Consensus 164 ~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 164 EASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887554
No 76
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.77 E-value=1.6e-18 Score=159.22 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=115.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +...+..++..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-------FRSVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHHhcC
Confidence 4799999999999999999998765555555555566666677776 5789999999754 223344556789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++. .....+..++.++..+.. .+.|+++|+||+|+.... +....+.+. .+.+++++|
T Consensus 84 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S 153 (186)
T 2bme_A 84 AGALLVYDITSR-------ETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQE-NELMFLETS 153 (186)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEec
Confidence 999999999872 445555566665554422 478999999999996421 222233333 357899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 154 a~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 77
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.77 E-value=8.7e-19 Score=164.49 Aligned_cols=153 Identities=20% Similarity=0.315 Sum_probs=106.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|.+|||||||+++|++... ..+ .+|..+..+.+.+++..+.++||||...... .+..++..+|++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~~--~~~-~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d~~ 96 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDRL--GQH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAINGI 96 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--Ccc-CCCCCceeEEEEECCEEEEEEECCCcHhhHH-------HHHHHHhcCCEE
Confidence 699999999999999999987643 222 2456667788888889999999999765222 223446689999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH--------------
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-------------- 450 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~-------------- 450 (494)
++|+|+++ ..++.....++.++.... ...+.|+++|+||+|+... ++..+.+...
T Consensus 97 i~v~D~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 97 VFLVDCAD-------HERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp EEEEETTC-------GGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred EEEEECCC-------HHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 99999987 345666666666554321 2347899999999999752 2322222211
Q ss_pred -cCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 451 -VQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 451 -~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
....+++++||++++|+++++++|.+.+
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 0234699999999999999999998654
No 78
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=1.5e-18 Score=158.98 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=114.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.++||||..+... + ....+..+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----F---PQTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----C---CGGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH----H---HHHHHhcC
Confidence 479999999999999999999654 345565665555566667776 5679999999865321 1 22345679
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..+..++..+.. ..+.|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 79 ~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 149 (181)
T 3t5g_A 79 NGYILVYSVTS-------IKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESW-NAAFLESS 149 (181)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEEEECC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHh-CCcEEEEe
Confidence 99999999987 3455666666666544321 236899999999998643 23334444444 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.|++++++.|.+.+....
T Consensus 150 a~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 150 AKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTSHHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887654
No 79
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=158.73 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=109.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||+.+ +.......+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 97 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER-------YRAITSAYYRG 97 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT-------TCTTHHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHHHhcc
Confidence 34799999999999999999998754332222212222333344443 6789999999865 22234556788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++. ..+..+..++.++..+. ....|+++|+||+|+... .+....+... .+.+++++
T Consensus 98 ~d~vi~v~D~~~~-------~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~ 167 (193)
T 2oil_A 98 AVGALLVFDLTKH-------QTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPTEEARMFAEN-NGLLFLET 167 (193)
T ss_dssp CCEEEEEEETTCH-------HHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEEE
T ss_pred CCEEEEEEECCCH-------HHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCHHHHHHHHHH-cCCEEEEE
Confidence 9999999999872 34444555655554432 246899999999999653 1223333333 35789999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.|+++++++|.+.+.+
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 168 SALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 80
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.77 E-value=3.5e-18 Score=157.24 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=110.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecce-eeEEeecC-----------cceEEecCCCccCCccccccch
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-LGNMNFDD-----------IQITVADIPGLIKGAHENRGLG 374 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~-~g~v~~~~-----------~~~~l~DtPGli~~a~~~~~L~ 374 (494)
.+|+|+|.+|||||||+++|++........+..+.+.. ...+.+++ ..+.++||||... +.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~ 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FR 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HH
Confidence 47999999999999999999986543222222222222 23444443 4789999999854 33
Q ss_pred hhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHH
Q 011082 375 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERR 450 (494)
Q Consensus 375 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~ 450 (494)
..+..++..+|++++|+|+++. .....+..++.++..+. .....|+++|+||+|+... .+....+.+.
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNE-------QSFLNVRNWISQLQMHA-YSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHS-SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEECCCH-------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 3445567889999999999872 34555556666655442 1247899999999999652 2233334443
Q ss_pred cCCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 451 VQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 451 ~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+ +.+++++||+++.|+++++++|.+.+.+.
T Consensus 157 ~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 157 Y-GIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp H-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred c-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3 56899999999999999999998887543
No 81
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=8.7e-18 Score=154.12 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=112.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc--ceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.. ....+..++.......+.+++. .+.++||||..+ +.......+..+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI-FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE-------FSAMREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG-------GCSSHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh-------hHHHHHHHHhcC
Confidence 379999999999999999999753 3344544544444556666663 456799999754 222334567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..+..++..+. ...+.|+|+|+||+|+... .+....+.+.+ +.+++++|
T Consensus 91 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 161 (183)
T 3kkq_A 91 DGFLIVYSVTD-------KASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-NIPYIETS 161 (183)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-TCCEEEEB
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-CCeEEEec
Confidence 99999999987 244555566666554432 2347899999999998652 23334444444 47899999
Q ss_pred cc-cCCCHHHHHHHHHHHhcc
Q 011082 461 AV-LEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~-~g~gI~~L~~~I~~~l~~ 480 (494)
|+ ++.|++++++.|.+.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 99 999999999999987753
No 82
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.77 E-value=4.3e-18 Score=174.98 Aligned_cols=168 Identities=29% Similarity=0.395 Sum_probs=123.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccc--hhhHHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL--GHAFLRHIE 382 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L--~~~fl~~i~ 382 (494)
....|+++|++|||||||+|+|++..+.+.+++++|.++..+.+...+..+.++||||+.......... ...+.....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 245 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRY 245 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHh
Confidence 456899999999999999999999887788899999999988888888889999999997632211110 011122223
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc--CCCCEEEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV--QGVPIYPVC 460 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~--~~~~ii~IS 460 (494)
.+|.+++|+|+++.. .........++.++.... .+.|+|+|+||+|+...... +.+.+.. .+.++++||
T Consensus 246 ~ad~illV~D~s~~~-----~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 246 LGNLIIYIFDPSEHC-----GFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDVADEENI-KRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp TCSEEEEEECTTCTT-----SSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTTCCHHHH-HHHHHHHHHTTCCCEECB
T ss_pred cCCEEEEEEeCCccc-----cCCHHHHHHHHHHHHHhc---CCCCEEEEEECcccCChHHH-HHHHHHHHhcCCCeEEEe
Confidence 589999999987631 014555556666665432 27899999999999876543 2222211 356899999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|++|+|+++|+++|.+.+...
T Consensus 317 A~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 83
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.77 E-value=3.3e-18 Score=159.55 Aligned_cols=155 Identities=23% Similarity=0.270 Sum_probs=107.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|++.... .+ .+|.......+.+.+..+.++||||..+ +...+...+..+|+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNICFTVWDVGGQDK-------IRPLWRHYFQNTQG 99 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCE--EE-EEETTEEEEEEEETTEEEEEEECC------------CTTHHHHHHTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCcc--cc-CCcCceeEEEEEECCEEEEEEECCCCHh-------HHHHHHHHhccCCE
Confidence 37999999999999999999876432 11 2355555566777778999999999865 22234456789999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc---CCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~---~~~~ii~IS 460 (494)
+++|+|+++. ..+.....++.++... ....+.|+++|+||+|+... +++.+.+.... .+.+++++|
T Consensus 100 iilv~D~~~~-------~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 171 (192)
T 2b6h_A 100 LIFVVDSNDR-------ERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATC 171 (192)
T ss_dssp EEEEEETTCG-------GGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECB
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECc
Confidence 9999999872 4566665555554332 12347899999999999764 23222222111 234689999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|+++++++|.+.+.
T Consensus 172 A~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 172 ATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTTTBTHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 84
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.76 E-value=2.1e-18 Score=157.97 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=109.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++ ..+.++||||..+.. ......+..+|
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 78 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQTD 78 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHH-------HHHHHhccCCc
Confidence 799999999999999999997543 33444444444444455555 457799999986521 12223467899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH----------------HHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~----------------~~~L~ 448 (494)
++++|+|+++. .++.... .+...+..+. .+.|+++|+||+|+...... ...+.
T Consensus 79 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 79 VSLICFSLVSP-------ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred EEEEEEECCCh-------hhHHHHHHHHHHHHHHhC---CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 99999999872 3444444 4555555442 27899999999999754321 12233
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+.+...+++++||+++.|++++++.|.+.+.+..
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 149 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 3332238999999999999999999999886544
No 85
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.76 E-value=3.2e-18 Score=159.12 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=111.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++... ...+..|+.......+.+++ ..+.++||||..+. .......+..+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY-------DRLRPLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------TTTGGGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH-------HHHhHhhccCC
Confidence 4799999999999999999998753 34444444444444555665 45699999997542 22233456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCCh------HHHHHHHHHHcCCCCEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGA------EEVYEELERRVQGVPIY 457 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~------~e~~~~L~~~~~~~~ii 457 (494)
|++++|+|+++ ..++..+ ..+...+..+ ..+.|+|+|+||+|+... .+....+.+.+....++
T Consensus 96 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
T 3reg_A 96 DVVLLCFAVNN-------RTSFDNISTKWEPEIKHY---IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYI 165 (194)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHTHHHHHHHH---CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEE
T ss_pred cEEEEEEECCC-------HHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEE
Confidence 99999999987 2344443 4455555443 246899999999999642 23334444444333399
Q ss_pred EEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
++||+++.|++++++.|.+.+.+...
T Consensus 166 ~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 166 EASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred EeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998866543
No 86
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.76 E-value=2.9e-18 Score=158.36 Aligned_cols=155 Identities=28% Similarity=0.311 Sum_probs=108.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|++... ..+ ..|.......+.+++..+.++||||... +...+..++..+|+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~--~~~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQGFKLNVWDIGGQRK-------IRPYWRSYFENTDI 86 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC--EEE-EEETTEEEEEEEETTEEEEEEECSSCGG-------GHHHHHHHHTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Ccc-cCcCCeEEEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 4799999999999999999998632 111 1233333446677788899999999754 33344567789999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc-------CCCCEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYPV 459 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~-------~~~~ii~I 459 (494)
+++|+|+++ ..++.....++.++... ....+.|+++|+||+|+...... +.+.+.+ ...+++++
T Consensus 87 ~i~v~d~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
T 1fzq_A 87 LIYVIDSAD-------RKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAPA-SEIAEGLNLHTIRDRVWQIQSC 157 (181)
T ss_dssp EEEEEETTC-------GGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCCH-HHHHHHTTGGGCCSSCEEEEEC
T ss_pred EEEEEECcC-------HHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcCcccCCCH-HHHHHHhCchhccCCceEEEEc
Confidence 999999987 24555555555444221 12357899999999999764211 1222221 23468999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||++++|+++++++|.+.+.+
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 158 SALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTTCTTHHHHHHHHHHTC--
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 87
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.2e-18 Score=160.04 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=108.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++..... .+..|.-......+..++ ..+.++||||..+ +.......+..+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 80 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ-------FPAMQRLSISKG 80 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGS-------CHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCChHH-------hHHHHHHhhccC
Confidence 479999999999999999999864321 122121111122233443 5789999999754 223344567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~ISA 461 (494)
|++++|+|+++. ..+.....++..+..+.....+.|+|+|+||+|+... .+....+...+ +.+++++||
T Consensus 81 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa 152 (199)
T 2gf0_A 81 HAFILVFSVTSK-------QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-KCAFMETSA 152 (199)
T ss_dssp SEEEEEEETTCH-------HHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH-TCEEEECBT
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh-CCeEEEEec
Confidence 999999999862 3444445555555444322346899999999999753 22233333333 468999999
Q ss_pred ccCCCHHHHHHHHHHHhcccC
Q 011082 462 VLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+++.|+++|+++|.+.+.+..
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSSSC
T ss_pred CCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999876543
No 88
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.76 E-value=3.9e-18 Score=157.87 Aligned_cols=157 Identities=17% Similarity=0.242 Sum_probs=110.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccch-hhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLG-HAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~-~~fl~~i~~ 383 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||..+ +. ......+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 93 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER-------FRKSMVQHYYRN 93 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH-------HHTTTHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhhHHHhcC
Confidence 4799999999999999999997654433334444445555666666 5789999999754 21 223455778
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
+|++|+|+|+++ ..++..+..+..++..+.. ..+.|+++|+||+|+... .+....+.+.. +.+++++
T Consensus 94 ~d~iilv~D~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 164 (189)
T 1z06_A 94 VHAVVFVYDMTN-------MASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH-SMPLFET 164 (189)
T ss_dssp CCEEEEEEETTC-------HHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCCEEEC
T ss_pred CCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHc-CCEEEEE
Confidence 999999999987 2445555566666655421 247899999999999643 23334444443 5789999
Q ss_pred EcccC---CCHHHHHHHHHHHhc
Q 011082 460 CAVLE---EGVPELKVGLRMLVN 479 (494)
Q Consensus 460 SA~~g---~gI~~L~~~I~~~l~ 479 (494)
||+++ .||++++++|.+.+.
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 99999 999999999987664
No 89
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=8.8e-19 Score=160.57 Aligned_cols=156 Identities=22% Similarity=0.246 Sum_probs=106.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|++... . ....|.......+.+++..+.++||||..+.. ..+..++..+|+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~--~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 88 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV--V-TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR-------PYWRCYYADTAA 88 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE--E-EECSSTTCCEEEEEETTEEEEEEEEC----CC-------TTGGGTTTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc--C-ccCCcCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 4799999999999999999986533 1 12233444456677778899999999986522 223345678999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc---CCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~---~~~~ii~IS 460 (494)
+++|+|+++ ..+......++.++.... ...+.|+++|+||+|+... ++..+.+.... ...+++++|
T Consensus 89 ii~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 89 VIFVVDSTD-------KDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp EEEEEETTC-------TTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred EEEEEECCC-------HHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 999999987 355666665555543321 1357899999999999754 22222221110 134689999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 161 a~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 90
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=5.6e-18 Score=156.36 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=105.3
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccc------cccchhhH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE------NRGLGHAF 377 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~------~~~L~~~f 377 (494)
...+|+|+|.+|||||||+++|++... ...+.+.+|....... .+..+.++||||+...... ...+...+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 345899999999999999999998763 3445555555443322 2457899999997542111 01111122
Q ss_pred HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHc---
Q 011082 378 LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV--- 451 (494)
Q Consensus 378 l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~--- 451 (494)
+.....+|++++|+|++.. .. .....+...+... +.|+++|+||+|+.+.. ...+.+.+.+
T Consensus 99 ~~~~~~~~~vi~v~d~~~~-------~~-~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIP-------PQ-DSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHCTTEEEEEEEEETTSC-------CC-HHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HhcCcCceEEEEEecCCCC-------CC-HHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 2223344999999998762 12 2222333333322 68999999999997543 2333444433
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
...+++++||+++.|+++++++|.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 34689999999999999999999998764
No 91
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.3e-18 Score=157.43 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=110.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|+|||||+++|++.. ....+..|+.+.....+.+++ ..+.+|||||..+... ....++..+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-------HHHHhcCCC
Confidence 479999999999999999999863 334555555555555666666 5789999999865322 223446779
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChH----------------HHHHHH
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEEL 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----------------e~~~~L 447 (494)
|++++|+|+++ ..++.... .+..++..+. .+.|+++|+||+|+.... +....+
T Consensus 91 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (194)
T 2atx_A 91 DVFLICFSVVN-------PASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 160 (194)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH
Confidence 99999999987 23455554 4556665542 378999999999997642 112233
Q ss_pred HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 448 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 448 ~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+.+...+++++||+++.|+++++++|.+.+.
T Consensus 161 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 161 AKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 33333338999999999999999999987653
No 92
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.76 E-value=5.9e-18 Score=156.37 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=109.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++... ...+..|+.......+.+++ ..+.++||||..+.. ......+..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHhhCcC
Confidence 3799999999999999999997643 34455555545555566665 458999999975421 1223456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ii~ISA 461 (494)
|++++|+|+++ ......+..+..++..+.. ....|+++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 94 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa 164 (190)
T 3con_A 94 EGFLCVFAINN-------SKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY-GIPFIETSA 164 (190)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-TCCEEECCT
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHc-CCeEEEEeC
Confidence 99999999987 2445556666666655432 236899999999998752 23333444443 468999999
Q ss_pred ccCCCHHHHHHHHHHHhcccC
Q 011082 462 VLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+++.|+++++++|.+.+.+..
T Consensus 165 ~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 165 KTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998876544
No 93
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=160.81 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=108.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.++||||... +...+...+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~ 97 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER-------FRSVTRSYYRG 97 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH-------HSCCCHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh-------HHHHHHHHhcc
Confidence 34799999999999999999998755444445555555566666766 6899999999754 11223456788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++. ..+..+..++.++..+.. .+.|+++|+||+|+.... +....+.+. .+.+++++
T Consensus 98 ~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~ 167 (200)
T 2o52_A 98 AAGALLVYDITSR-------ETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQE-NELMFLET 167 (200)
T ss_dssp CSEEEEEEETTCH-------HHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEEE
T ss_pred CCEEEEEEECcCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHH-cCCEEEEE
Confidence 9999999999872 345555566665554422 368999999999996421 222233333 35789999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|+++++++|.+.+.+.
T Consensus 168 SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 168 SALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 94
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=153.61 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=102.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++..... .++.+..+.....+.+++ ..+.++||||..... ........+..+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~~ 78 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD-----KSWSQESCLQGG 78 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC------------CHHHHHTTTSC
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccc-----hhhhHHhhcccC
Confidence 479999999999999999999875432 122222233445566666 468999999985410 001112234568
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++.....+..++..+. ...+.|+|+|+||+|+.... +....+...+ +.+++++|
T Consensus 79 ~~~i~v~d~~~-------~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 149 (175)
T 2nzj_A 79 SAYVIVYSIAD-------RGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEEGRACAVVF-DCKFIETS 149 (175)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH-TSEEEECB
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHc-CCeEEEEe
Confidence 99999999987 245556666666665432 12378999999999997531 2222333333 46899999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|+++.|+++++++|.+.+...
T Consensus 150 a~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887543
No 95
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.75 E-value=2e-18 Score=157.88 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=100.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+++|.+|+|||||+++|++... ...+..|+.+.....+.+++ ..+.++||||..+.. ......+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-------RLRPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------CEEECCCC-CTTT-------TTGGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhccC
Confidence 35799999999999999999997642 33444444333333333444 457799999986522 222345678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH--------------HHHHH
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV--------------YEELE 448 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~--------------~~~L~ 448 (494)
+|++++|+|+++ ..++..+. .+..++..+. .+.|+++|+||+|+...... ...+.
T Consensus 80 ~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 80 ADVFILAFSLIS-------KASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp CSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 999999999986 23445554 4555665542 37899999999998654321 23344
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
+.+...+++++||+++.|++++++.|.+.+.
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 150 KLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4443348999999999999999999988764
No 96
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.8e-18 Score=162.81 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=110.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+... ....++..+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA-------ITSAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh-------hHHHHhccC
Confidence 4799999999999999999998765444444445555556667776 5789999999765221 223446789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++|+|+|+++ ..++..+..++.++..+. ....|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 87 d~vilV~D~~~-------~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 156 (223)
T 3cpj_B 87 VGALIVYDISK-------SSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN-QLLFTETS 156 (223)
T ss_dssp CEEEEEEC-CC-------HHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT-TCEEEECC
T ss_pred CEEEEEEeCCC-------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999987 245566666666665542 236899999999999642 12233333333 57899999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.||++++++|.+.+.+..
T Consensus 157 a~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998876543
No 97
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=3.4e-18 Score=168.85 Aligned_cols=159 Identities=26% Similarity=0.402 Sum_probs=119.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHH-HHH--Hh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFL-RHI--ER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl-~~i--~~ 383 (494)
.+|+|+|.+|||||||+|+|++....+++++.+|.+...+.+.+.+..+.++||||+....... ...... .++ ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS--IDELIARNFILDGN 81 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC--HHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC--HHHHHHHHhhhccC
Confidence 4799999999999999999999887788999999999999999999899999999997632211 111111 122 46
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~IS 460 (494)
+|++++|+|++. ......+..++... ...|+++|+||+|+.... ...+.+.+.+ +.+++++|
T Consensus 82 ~d~vi~v~D~~~----------~~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~~~~S 146 (271)
T 3k53_A 82 ADVIVDIVDSTC----------LMRNLFLTLELFEM----EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-GVPVIPTN 146 (271)
T ss_dssp CSEEEEEEEGGG----------HHHHHHHHHHHHHT----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-SSCEEECB
T ss_pred CcEEEEEecCCc----------chhhHHHHHHHHhc----CCCCEEEEEEChhcCcccccHHHHHHHHHHc-CCcEEEEE
Confidence 899999999886 12333333444332 238999999999976432 1134555555 57899999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.|++++++.|...+....
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTCC
T ss_pred eCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999886543
No 98
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.75 E-value=1.1e-17 Score=158.33 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=107.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec------------CcceEEecCCCccCCccccccch
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------DIQITVADIPGLIKGAHENRGLG 374 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~------------~~~~~l~DtPGli~~a~~~~~L~ 374 (494)
.+|+|+|.+|||||||+++|++........+..+.+.....+.++ ...+.+|||||..+ +.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------FR 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------HH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-------HH
Confidence 479999999999999999999875432222222233333444444 35689999999643 33
Q ss_pred hhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHH
Q 011082 375 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERR 450 (494)
Q Consensus 375 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~ 450 (494)
..+...+..+|++|+|+|+++. ..+..+..++.++..+. .....|+|+|+||+|+... .+....+.+.
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~-------~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQ-------QSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPDQREVNERQARELADK 170 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCH-------HHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred hHHHHHhcCCCEEEEEEECcCH-------HHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 3445667889999999999862 33344444433332111 1146899999999999653 2333444444
Q ss_pred cCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 451 VQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 451 ~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+ +.+++++||+++.|+++++++|.+.+.+
T Consensus 171 ~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 Y-GIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp T-TCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred C-CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3 5789999999999999999999887754
No 99
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.75 E-value=8.4e-19 Score=186.85 Aligned_cols=164 Identities=22% Similarity=0.270 Sum_probs=97.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeecCcceEEecCCCccCCccccccch-hhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~-~~fl~~i 381 (494)
+...+|+|+|+||||||||+|+|++.. ..+.++++||.+.....+.+++..+.++||||+.+.......++ ...+.++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 445679999999999999999999875 45788999999999999999999999999999966322211111 1224456
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH-HHHHHHHcCCCCEEEEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV-YEELERRVQGVPIYPVC 460 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~-~~~L~~~~~~~~ii~IS 460 (494)
..+|++|+|+|+++. ....+.......+. .+.+.|+|+|+||+|+...... .+.+.+. ...++++||
T Consensus 311 ~~aD~vl~VvD~s~~-------~s~~~~~~~~~~l~----~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~~~~~i~vS 378 (476)
T 3gee_A 311 AEADLILYLLDLGTE-------RLDDELTEIRELKA----AHPAAKFLTVANKLDRAANADALIRAIADG-TGTEVIGIS 378 (476)
T ss_dssp SSCSEEEEEEETTTC-------SSGGGHHHHHHHHH----HCTTSEEEEEEECTTSCTTTHHHHHHHHHH-HTSCEEECB
T ss_pred ccCCEEEEEEECCCC-------cchhhhHHHHHHHH----hcCCCCEEEEEECcCCCCccchhHHHHHhc-CCCceEEEE
Confidence 789999999999873 22221222212121 1237899999999999865432 2234443 125799999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|++++|+++|+++|.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987
No 100
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=5.8e-18 Score=156.87 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=100.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC--CCcccccceeecceeeEEeecCcceEEecCCCccCCccc---cccchhhHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE---NRGLGHAFLRH 380 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~---~~~L~~~fl~~ 380 (494)
..+|+|+|.+|||||||+++|++.. ......+++|....... + +..+.++||||+...... ...+.......
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 4589999999999999999999875 23455566665544332 2 347999999997543211 01111112233
Q ss_pred HHhh---ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHc---
Q 011082 381 IERT---KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV--- 451 (494)
Q Consensus 381 i~~a---d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~--- 451 (494)
+..+ |++++|+|+++. ...... .+...+.. ...|+++|+||+|+....+ ..+.+.+.+
T Consensus 100 ~~~~~~~~~~i~v~d~~~~-------~~~~~~-~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHA-------PSNDDV-QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID 166 (195)
T ss_dssp HHHCTTEEEEEEEEETTSC-------CCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC
T ss_pred HhhhhcCCEEEEEEECCCC-------CCHHHH-HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc
Confidence 4444 999999999873 233322 22233322 3689999999999987532 234455433
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
...+++++||+++.|+++|+++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999988764
No 101
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.75 E-value=3.9e-18 Score=157.59 Aligned_cols=163 Identities=20% Similarity=0.151 Sum_probs=103.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccc--------cceeecceeeE--E-eecC--cceEEecCCCccCCccccccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHY--------SFTTLRPNLGN--M-NFDD--IQITVADIPGLIKGAHENRGL 373 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~--------~ftTl~p~~g~--v-~~~~--~~~~l~DtPGli~~a~~~~~L 373 (494)
.+|+|+|.+|||||||++.|.+........ ..+|....... + .+++ ..+.+|||||... +
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~ 87 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF-------Y 87 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS-------C
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH-------H
Confidence 379999999999999999998864322110 11122111111 1 1222 5689999999865 3
Q ss_pred hhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHHHc
Q 011082 374 GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRV 451 (494)
Q Consensus 374 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~~ 451 (494)
......++..+|++|+|+|+++... ......+..+...+..+.....+.|+++|+||+|+.... +....+.+..
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~----~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRL----RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE 163 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGH----HHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchh----hHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhc
Confidence 3334456788999999999985200 001223333333333333344689999999999997541 2222222222
Q ss_pred CCC-CEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 452 QGV-PIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 452 ~~~-~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+. +++++||+++.|+++++++|.+.+.+.
T Consensus 164 -~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 164 -GKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 45 899999999999999999998877553
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=2.1e-18 Score=159.52 Aligned_cols=158 Identities=21% Similarity=0.207 Sum_probs=110.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|++.... .+ ..|.......+.+++..+.++||||..+.... +...+..+|+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d~ 92 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVV--TT-VPTVGVNLETLQYKNISFEVWDLGGQTGVRPY-------WRCYFSDTDA 92 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCE--EE-CSSTTCCEEEEEETTEEEEEEEECCSSSSCCC-------CSSSSTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--Cc-CCCCceEEEEEEECCEEEEEEECCCCHhHHHH-------HHHHhhcCCE
Confidence 37999999999999999999865432 11 22444555667777889999999998653222 2234568999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc---CCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~---~~~~ii~IS 460 (494)
+++|+|+++ ..+......++.++... ....+.|+++|+||+|+... ++..+.+.... .+.+++++|
T Consensus 93 ii~v~d~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 93 VIYVVDSTD-------RDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp EEEEEETTC-------CTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred EEEEEeCCC-------HHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 999999987 34566555555544332 12347899999999999764 33333222111 234699999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.|+++++++|.+.+.+..
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHTC
T ss_pred CCCccCHHHHHHHHHHHHHhcc
Confidence 9999999999999998886543
No 103
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.75 E-value=3.3e-18 Score=161.23 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=112.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|+|||||+++|++... ..++..|+.+.....+.+++ ..+.+|||||..+... ....++..+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhccCC
Confidence 3799999999999999999997643 34555555555555566665 5789999999865322 122346789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHH------------HHHHHHHHc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE------------VYEELERRV 451 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e------------~~~~L~~~~ 451 (494)
|++++|+|+++. .++..+. .+..++..+. .+.|+|+|+||+|+..... ....+.+.+
T Consensus 82 d~~ilv~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 82 DIFVLAFSLISK-------ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 999999999872 4445543 5656665543 3789999999999965432 223344444
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
...+++++||+++.|++++++.|.+.+.+..
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 3348999999999999999999998876644
No 104
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=5.1e-18 Score=179.98 Aligned_cols=165 Identities=20% Similarity=0.255 Sum_probs=119.9
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeecCcceEEecCCCccCCcccccc----chhhHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRG----LGHAFLR 379 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~----L~~~fl~ 379 (494)
...+|+++|.+|+|||||+|+|++.. ..+.++++||.+.....+.+++..+.+|||||+.+....... .....+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 34589999999999999999999875 457889999999999999999999999999998764322111 1122356
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-----HHHHHHHHHHc---
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRV--- 451 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-----~e~~~~L~~~~--- 451 (494)
+++.+|++|+|+|++.. ...+...+...+.. ..+|+|+|+||+|+... ++..+.+.+.+
T Consensus 274 ~~~~ad~~llviD~~~~--------~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred HHhhCCEEEEEEeCCCC--------cCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence 78899999999999873 12334444444433 36899999999999753 33445555554
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
...++++|||++|.|+++|++.|.+.+....
T Consensus 341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 341 DYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999998876544
No 105
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=2.4e-18 Score=173.02 Aligned_cols=162 Identities=22% Similarity=0.254 Sum_probs=115.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCcc-CCcc-ccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLI-KGAH-ENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli-~~a~-~~~~L~~~fl~~i~~ 383 (494)
..|+|||.||||||||+|+|++.+.. +++.+.||.+...+.+..++..+.++||||+. .... .+..+.......+..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 37999999999999999999998654 46678888888888888888899999999986 2111 000111112344677
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC-hHHHHHHHHHHc---CCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG-AEEVYEELERRV---QGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~-~~e~~~~L~~~~---~~~~ii~I 459 (494)
+|++++|+|+++ . ... ...+...+.. .+.|.|+|+||+|+.. .....+.+.+.. ....+++|
T Consensus 89 ~D~vl~Vvd~~~-~------~~~--~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 89 VELVIFVVEGTR-W------TPD--DEMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp EEEEEEEEETTC-C------CHH--HHHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred CCEEEEEEeCCC-C------CHH--HHHHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 899999999865 2 111 2233333321 3689999999999987 444444444333 22368999
Q ss_pred EcccCCCHHHHHHHHHHHhcccC
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
||+++.|+++|++.|...+.+..
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBCC
T ss_pred ECCCCCCHHHHHHHHHHhCCcCC
Confidence 99999999999999998876543
No 106
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=160.74 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=100.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++... ...+..|+.......+.+++ ..+.+|||||..+.. ......+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhccC
Confidence 3799999999999999999997643 33444555444455566665 478999999976421 1223457789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH----------------HHHH
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YEEL 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~----------------~~~L 447 (494)
|++++|+|+++. .++..+. .+...+..+. .+.|+|+|+||+|+...... ...+
T Consensus 107 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 107 SVLLLCFDVTSP-------NSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp EEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 999999999872 3444443 4555555432 36899999999999765322 1233
Q ss_pred HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 448 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 448 ~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
.+.+...+++++||+++.|++++++.|.+.+.+.+
T Consensus 177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 33333238999999999999999999998876543
No 107
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.75 E-value=7.3e-18 Score=164.56 Aligned_cols=166 Identities=19% Similarity=0.154 Sum_probs=112.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccc--eeecceeeEEeecCcceEEecCCCccCCcccc-ccchhhHHHHH--
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSF--TTLRPNLGNMNFDDIQITVADIPGLIKGAHEN-RGLGHAFLRHI-- 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~f--tTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~-~~L~~~fl~~i-- 381 (494)
.+|+|||.+|||||||+|+|++.+..+..+.+ +|..+..+.+..++..+.++||||+....... ..+.....+.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~ 101 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLL 101 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 37999999999999999999999887766655 78888889999999999999999997643322 22333333444
Q ss_pred --HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHh-hhcccCCCCEEEEEeCCCcCCh--HH--------HHHHHH
Q 011082 382 --ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDGA--EE--------VYEELE 448 (494)
Q Consensus 382 --~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IlVlNKiDl~~~--~e--------~~~~L~ 448 (494)
..+|++|+|+|++.. .... ..++..+.. +...+...|+|+|.||+|+... ++ .++.+.
T Consensus 102 ~~~~~d~il~V~d~~~~--------~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 102 SAPGPHALLLVTQLGRF--------TAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HTTCCSEEEEEEETTBC--------CHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred cCCCCCEEEEEEeCCCC--------CHHH-HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 778999999998751 1222 222333322 3344457899999999999753 11 123333
Q ss_pred HHcCCCCEEEEEccc-----CCCHHHHHHHHHHHhcccC
Q 011082 449 RRVQGVPIYPVCAVL-----EEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~-----g~gI~~L~~~I~~~l~~~~ 482 (494)
+.+ +..++.+++.. +.|+++|++.|.+++.+..
T Consensus 173 ~~~-g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 173 AEC-GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp HHT-TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHc-CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 333 44566676544 5899999999999998643
No 108
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.75 E-value=1.3e-17 Score=159.79 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=109.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccccccee-ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT-l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+|||.+|+|||||+++++.... ...|..|. .+.....+..++ ..+.+|||+|..+.. .....+++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~-------~l~~~~~~~a 86 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR-------SLIPSYIRDS 86 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCG-------GGHHHHHTTC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh-------hHHHHHhccc
Confidence 799999999999999999986532 22332221 222333445555 567899999987622 2234567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
+++++|+|+++ ..++..+..++..+..+.. .+.|+|||+||+|+.+. .+....+.+.+ +..++++|
T Consensus 87 ~~~ilv~di~~-------~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-~~~~~e~S 156 (216)
T 4dkx_A 87 AAAVVVYDITN-------VNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-NVMFIETS 156 (216)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEEB
T ss_pred cEEEEEeecch-------hHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHh-CCeeEEEe
Confidence 99999999997 4677777888877766543 36799999999999653 22234444444 57899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.||+++|+.|.+.+..
T Consensus 157 Aktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999887754
No 109
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=4.1e-18 Score=160.52 Aligned_cols=157 Identities=22% Similarity=0.244 Sum_probs=106.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||..+.. ......+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCT-------TTGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHhhcCCC
Confidence 37999999999999999999986433 3344444444434455665 578999999986522 1223346789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHH----------------
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEEL---------------- 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L---------------- 447 (494)
|++++|+|+++. .++... ..+...+..+. .+.|+++|+||+|+.......+.+
T Consensus 98 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 98 DVILMCFSVDSP-------DSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp CEEEEEEETTCH-------HHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 999999999862 344444 44555555432 378999999999997653322222
Q ss_pred HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 448 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 448 ~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
.......+++++||+++.|+++|+++|.+.+...
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 2222223789999999999999999999887543
No 110
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=160.35 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=110.2
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+|+|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.++||||..+... .....+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-------LPYSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-------CCGGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH-------HHHHHHhc
Confidence 448999999999999999999987543 3444444444444444443 6679999999765322 12344677
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ...+..+..+..++..+. ...+.|+|+|+||+|+.... +....+.+.+ +.+++++
T Consensus 96 ~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 166 (201)
T 3oes_A 96 VHGYVLVYSVTS-------LHSFQVIESLYQKLHEGH-GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW-GATFMES 166 (201)
T ss_dssp CCEEEEEEETTC-------HHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEC
T ss_pred CCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCccccccCHHHHHHHHHHh-CCeEEEE
Confidence 999999999987 245566666666654432 12368999999999986432 2233444444 5689999
Q ss_pred EcccCCCHHHHHHHHHHHhcccCCc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
||+++.|++++++.|.+.+.+....
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHC---
T ss_pred eCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999988765443
No 111
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.6e-17 Score=154.77 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=111.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.++||||..+ .......+..+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 99 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED--------TIQREGHMRWG 99 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC--------CHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc--------ccchhhhhccC
Confidence 37999999999999999999986432 3333333333334455555 5689999999865 12344567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..+..++..+.. ..+.|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 100 d~iilv~D~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 170 (196)
T 2atv_A 100 EGFVLVYDITD-------RGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAFYECS 170 (196)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEEEECC
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHh-CCeEEEEC
Confidence 99999999987 2445555666666655432 247899999999999653 12233344333 56899999
Q ss_pred cccCC-CHHHHHHHHHHHhccc
Q 011082 461 AVLEE-GVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~-gI~~L~~~I~~~l~~~ 481 (494)
|+++. |+++++++|.+.+.+.
T Consensus 171 a~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 171 ACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp TTTCTTCHHHHHHHHHHHHHHH
T ss_pred CCcCCcCHHHHHHHHHHHHHhh
Confidence 99999 9999999998877543
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=4.4e-18 Score=182.03 Aligned_cols=162 Identities=22% Similarity=0.283 Sum_probs=117.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
..+|+|||.+|||||||+++|++.+. + ..++|+......+.+.+..+.++||||... +...+..+++.+|
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~--~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ad 391 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-V--TTIPTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYYTGTQ 391 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-C--CCCCCSSEEEEEEESSSCEEEEEEECCCGG-------GSGGGGGGGTTCC
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccceeEEEEEeCCEEEEEEECCCcHH-------HHHHHHHHhccCC
Confidence 34799999999999999999998752 2 235688888888888889999999999755 2233456678999
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc-------CCCCEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYP 458 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~-------~~~~ii~ 458 (494)
++|+|+|+++ ...+.....++.++... ..+.+.|+|+|+||+|+..... ...+.+.+ ...++++
T Consensus 392 ~~i~V~D~~~-------~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 392 GLIFVVDCAD-------RDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQP 462 (497)
T ss_dssp EEEEEEETTC-------GGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEE
T ss_pred EEEEEEECcc-------hhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEE
Confidence 9999999987 35566666666655432 2335789999999999975421 11222222 2345999
Q ss_pred EEcccCCCHHHHHHHHHHHhcccCCccc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGEKSERL 486 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~~~~~~ 486 (494)
|||++|+||++++++|.+.+........
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~~~~~~~~ 490 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYKSKLAAAL 490 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC-------
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999877665543
No 113
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.74 E-value=4.1e-18 Score=160.46 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=108.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc--ceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++. .+.++||||..+. .......+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY-------DRLRPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG-------TTTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHhcc
Confidence 34799999999999999999997533 345555665555556666664 4569999998542 2223345678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----------------HH
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EE 446 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----------------~~ 446 (494)
+|++++|+|+++. .+..... .+...+..+. .+.|+|+|+||+|+....... ..
T Consensus 102 ~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 102 TDVFLICFSLVSP-------ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp CSEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 9999999999872 3444444 4555555442 478999999999997654322 22
Q ss_pred HHHHcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 447 LERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 447 L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
+.+.+...+++++||++++|+++++++|.+.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 23333334699999999999999999998754
No 114
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.74 E-value=1.1e-17 Score=156.84 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=107.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||..+.. ......+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHH-------HHHHHhcCCC
Confidence 37999999999999999999986543 3343444334444556665 478999999975421 1223356789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----------------HHH
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EEL 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----------------~~L 447 (494)
|++++|+|+++ ..++... ..+...+..+. .+.|+++|+||+|+....... ..+
T Consensus 98 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 98 DVILMCFSIDS-------PDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 99999999986 2344444 44555554432 378999999999997653221 122
Q ss_pred HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 448 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 448 ~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+.+...+++++||+++.|+++|++.|.+.+.
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 168 ANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 22232237999999999999999999988753
No 115
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=9.2e-18 Score=177.03 Aligned_cols=163 Identities=20% Similarity=0.259 Sum_probs=114.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCccccccchh----hHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH----AFLRH 380 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~----~fl~~ 380 (494)
..+|+|||.+|||||||+|+|++.... +.++++||.+.....+.+++..+.++||||+.+.......+.. ..+.+
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 254 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 254 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH
Confidence 358999999999999999999998654 7889999999998899999989999999998654332111111 12457
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-----HHHHHHHHHHc---C
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRV---Q 452 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-----~e~~~~L~~~~---~ 452 (494)
++.+|++++|+|+++. ...... .+...+.. ...|+|+|+||+|+.+. ++..+.+.+.+ .
T Consensus 255 ~~~ad~~llv~D~~~~-------~s~~~~-~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEG-------IIEQDK-RIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHCSEEEEEEETTTC-------CCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT
T ss_pred HHhCCEEEEEEcCCcC-------CcHHHH-HHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC
Confidence 8899999999999873 233333 34444332 36899999999999753 23344455544 4
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
..+++++||++|.|+++|++.+.+.+...
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999998877653
No 116
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.74 E-value=3.6e-18 Score=161.71 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=106.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeeccee-eEEeecC---cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL-GNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~-g~v~~~~---~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
.+|+|+|.+|||||||+++|++.... ..+..|+..... ..+...+ ..+.++||||..... ......+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA-------VLKDVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS-------CCCHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc-------hHHHHHhh
Confidence 47999999999999999999976432 222222111111 1122222 568999999976422 12234567
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH-HHHHHHc--CCCCEEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY-EELERRV--QGVPIYPV 459 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~-~~L~~~~--~~~~ii~I 459 (494)
.+|++|+|+|+++. .+...+..++.++..+.. ...|+++|+||+|+....+.. +.+.... .+.++++|
T Consensus 84 ~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 84 GASGAILFFDVTSR-------ITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp TCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEE
T ss_pred cCCEEEEEEeCCCH-------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEE
Confidence 89999999999872 445555566666655432 258999999999997653221 2222222 45789999
Q ss_pred EcccCCCHHHHHHHHHHHhcccCC
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
||+++.|+++++++|.+.+.+...
T Consensus 155 Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 155 SAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp BTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred ecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999998876543
No 117
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.74 E-value=3.2e-17 Score=151.92 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=109.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+|+|.+|||||||+++|++..... .+.. |.......+.+++ ..+.+|||+|... | ..+..+|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~-~~~~~~~ 87 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQ-EESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPE-----------L-QFAAWVD 87 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCC-CCCT-TCEEEEEEEEETTEEEEEEEEECSSSCC-----------H-HHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CcCC-CcceEEEEEEECCEEEEEEEEECCCChh-----------h-heecCCC
Confidence 79999999999999999998764322 2222 2333345666776 5678899999854 1 1677899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC------hHHHHHHHHHHcCCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG------AEEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~------~~e~~~~L~~~~~~~~ii~I 459 (494)
++++|+|+++ ..++..+..++.++..+. ...+.|+++|+||+|+.. ..+....+.+.+...+++++
T Consensus 88 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 88 AVVFVFSLED-------EISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 9999999987 345666666777765542 123689999999999842 12334445555545789999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|+++++++|.+.+.+.
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 118
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=2.7e-17 Score=173.57 Aligned_cols=164 Identities=22% Similarity=0.235 Sum_probs=113.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCcccc---cc-c-hhhHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN---RG-L-GHAFLR 379 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~---~~-L-~~~fl~ 379 (494)
..+|+|||+||||||||+|+|++... .++++++||.++..+.+.+++..+.++||||+....... .. + ....+.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999865 478999999999999999999999999999985432211 00 1 112356
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH-----HHHHHHHHHc---
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERRV--- 451 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~-----e~~~~L~~~~--- 451 (494)
+++.+|++++|+|++.. ..... ..+...+.. ..+|+|+|+||+|+...+ +..+.+.+.+
T Consensus 260 ~i~~ad~vllv~d~~~~-------~~~~~-~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
T 1mky_A 260 SIEKADVVVIVLDATQG-------ITRQD-QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI 326 (439)
T ss_dssp HHHHCSEEEEEEETTTC-------CCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG
T ss_pred HHhhCCEEEEEEeCCCC-------CCHHH-HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC
Confidence 78899999999999863 22222 223232322 368999999999997532 2333444433
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
...+++++||++|.|+++|++.|.+.+....
T Consensus 327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 327 DYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4568999999999999999999988876543
No 119
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=153.21 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=109.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.+|||||...... +...+..+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 92 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR-FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CERYLNWA 92 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------THHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------HHHHHhhC
Confidence 479999999999999999999864 234455444433333444554 5688999999865221 13467789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc-ccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
|++++|+|+++ ..++..+..++.++..+.. .....|+|+|+||+|+... .+....+.+.+ +.+++++
T Consensus 93 ~~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~ 164 (187)
T 3c5c_A 93 HAFLVVYSVDS-------RQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-GCLFFEV 164 (187)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEEC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-CCcEEEE
Confidence 99999999987 3456666666666655421 1247899999999999642 12233344443 5689999
Q ss_pred Ec-ccCCCHHHHHHHHHHHhc
Q 011082 460 CA-VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 460 SA-~~g~gI~~L~~~I~~~l~ 479 (494)
|| +++.|++++++.|.+.+.
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHHh
Confidence 99 899999999999988764
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=3.4e-18 Score=180.40 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=100.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccc-cccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~-~~~L~~~fl~~i~~a 384 (494)
++|+|||.||+|||||+|+|++.+. .+.+++++|.+...+.+.+.+..+.++||||+...... ...+......+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998765 36889999999999999888899999999999642211 112333445678899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g 464 (494)
|++|+|+|+.+. ..... ..+...+.. .++|+++|+||+|+.........+.+ +.-.++++|||++|
T Consensus 84 d~il~vvD~~~~-------~~~~d-~~~~~~l~~-----~~~pvilv~NK~D~~~~~~~~~~~~~-lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 84 DVIIFMVNGREG-------VTAAD-EEVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYS-LGFGEPYPISGTHG 149 (436)
T ss_dssp SEEEEEEETTTC-------SCHHH-HHHHHHHTT-----CCSCEEEEEECCCC-----CCCSSGG-GSSCCCEECBTTTT
T ss_pred CEEEEEEeCCCC-------CCHHH-HHHHHHHHH-----cCCCEEEEEECccCccchhhHHHHHH-cCCCCeEEEeCcCC
Confidence 999999999863 12222 223232321 47899999999998754321111111 11236899999999
Q ss_pred CCHHHHHHHHHHHhccc
Q 011082 465 EGVPELKVGLRMLVNGE 481 (494)
Q Consensus 465 ~gI~~L~~~I~~~l~~~ 481 (494)
.|+++|+++|.+.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp BTHHHHHHHHHHTGGGC
T ss_pred CChHHHHHHHHHhcCcc
Confidence 99999999999988754
No 121
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.72 E-value=1.6e-19 Score=168.96 Aligned_cols=157 Identities=16% Similarity=0.202 Sum_probs=110.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++........+.+|.+.....+.+++ ..+.++||||...... .....+..+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC-------CSCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH-------HHHHHhhcC
Confidence 4799999999999999999998766555566667777777777777 5789999999755222 223456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..++..+..+.. .+.|+|+|+||+|+.... +....+.+.+ +.+++++|
T Consensus 107 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~vS 176 (199)
T 3l0i_B 107 HGIIVVYDVTD-------QESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLETS 176 (199)
T ss_dssp SEEEECC-CCC-------SHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT-TCCBCCCC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHc-CCeEEEEE
Confidence 99999999987 3556666667666654422 368999999999997432 1122333333 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++++|.+.+.+
T Consensus 177 A~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp C---HHHHHHHHHHTTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 122
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.72 E-value=1.5e-17 Score=153.31 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=106.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++... ...+..|+.......+.+++ ..+.+|||||...... .....+..+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-------hHHhhcCCC
Confidence 3799999999999999999998643 23333333333334445554 5789999999754211 122345789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----------------HHHHHH
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEEL 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----------------e~~~~L 447 (494)
|++++|+|+++ ..++..+ ..+..++..+. .+.|+|+|+||+|+.... +....+
T Consensus 80 ~~~i~v~d~~~-------~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 80 DAVLICFDISR-------PETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred cEEEEEEECCC-------HHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 99999999987 2344444 45555555543 368999999999997421 222334
Q ss_pred HHHcCCCCEEEEEcc-cCCCHHHHHHHHHHHhc
Q 011082 448 ERRVQGVPIYPVCAV-LEEGVPELKVGLRMLVN 479 (494)
Q Consensus 448 ~~~~~~~~ii~ISA~-~g~gI~~L~~~I~~~l~ 479 (494)
.+.+...+++++||+ ++.|++++++.|.+.+-
T Consensus 150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 150 AKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 444434689999998 68999999999987754
No 123
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=2e-18 Score=183.30 Aligned_cols=163 Identities=23% Similarity=0.287 Sum_probs=111.3
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccch-hhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~-~~fl~~i 381 (494)
+...+|+|+|+||||||||+|+|++... .+.++++||.+.....+.+++..+.++||||+.+.......++ ...+..+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4456799999999999999999998743 4788899999998888999999999999999865322211111 1223446
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
..+|++|+|+|+++. ... ....++..+ ..+|+|+|+||+|+....... .+.+.....++++|||
T Consensus 302 ~~aD~vl~VvD~s~~-------~~~-~~~~i~~~l-------~~~piivV~NK~Dl~~~~~~~-~~~~~~~~~~~i~iSA 365 (462)
T 3geh_A 302 NTADLVLLTIDAATG-------WTT-GDQEIYEQV-------KHRPLILVMNKIDLVEKQLIT-SLEYPENITQIVHTAA 365 (462)
T ss_dssp CSCSEEEEEEETTTC-------SCH-HHHHHHHHH-------TTSCEEEEEECTTSSCGGGST-TCCCCTTCCCEEEEBT
T ss_pred hcCCEEEEEeccCCC-------CCH-HHHHHHHhc-------cCCcEEEEEECCCCCcchhhH-HHHHhccCCcEEEEEC
Confidence 678999999999873 222 223333333 247999999999998754321 1111113568999999
Q ss_pred ccCCCHHHHHHHHHHHhcccC
Q 011082 462 VLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+++.|+++|++.|.+.+....
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999987654
No 124
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.72 E-value=4.3e-18 Score=158.96 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=82.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-ccccccee-ecceeeEEeecC----cceEEecCCCccCCccccccchhhHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTT-LRPNLGNMNFDD----IQITVADIPGLIKGAHENRGLGHAFLRH 380 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftT-l~p~~g~v~~~~----~~~~l~DtPGli~~a~~~~~L~~~fl~~ 380 (494)
.+|+|+|.+|||||||+++|++.... ...+..|+ .+.....+.+++ ..+.+|||||+.+ +...+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~ 93 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-------YKEQISQY 93 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-------HHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH-------HHHHHHHH
Confidence 47999999999999999999986332 33444444 355666777774 4789999999854 22223344
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc-cCCCCEEEEEeCCCcCC-hH----HHHHHHHHHcCCC
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDG-AE----EVYEELERRVQGV 454 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IlVlNKiDl~~-~~----e~~~~L~~~~~~~ 454 (494)
+..+|++++|+|+++ ..++..+..++.++..+... ....|+++|+||+|+.. .. +....+.+.+ +.
T Consensus 94 ~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-~~ 165 (208)
T 2yc2_C 94 WNGVYYAILVFDVSS-------MESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-TL 165 (208)
T ss_dssp CCCCCEEEEEEETTC-------HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT-TC
T ss_pred HhhCcEEEEEEECCC-------HHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc-CC
Confidence 667999999999987 24556666676666554320 24789999999999976 21 2233344443 57
Q ss_pred CEEEEEccc-CCCHHHHHHHHHHHhccc
Q 011082 455 PIYPVCAVL-EEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 455 ~ii~ISA~~-g~gI~~L~~~I~~~l~~~ 481 (494)
+++++||++ +.|+++++++|.+.+.+.
T Consensus 166 ~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 166 DFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp EEEECCC-------CHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 899999999 999999999998876543
No 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.72 E-value=2.4e-17 Score=156.60 Aligned_cols=157 Identities=14% Similarity=0.133 Sum_probs=109.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++... ...+..|+.......+.+++ ..+.+|||||..+... .....+..+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 99 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-------VRPLCYSDS 99 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHHcCCC
Confidence 4799999999999999999998643 23444444333333444444 5789999999765221 222346679
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHH-HHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----------------HHHHHHH
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEEL 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----------------~e~~~~L 447 (494)
|++|+|+|+++ ..++.. +..|..++..+. .+.|+|+|+||+|+... .+....+
T Consensus 100 d~~i~v~d~~~-------~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (214)
T 3q3j_B 100 DAVLLCFDISR-------PETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169 (214)
T ss_dssp SEEEEEEETTC-------THHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred eEEEEEEECcC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence 99999999987 345555 566777776653 37899999999999642 1223344
Q ss_pred HHHcCCC-CEEEEEcccCCC-HHHHHHHHHHHhcccC
Q 011082 448 ERRVQGV-PIYPVCAVLEEG-VPELKVGLRMLVNGEK 482 (494)
Q Consensus 448 ~~~~~~~-~ii~ISA~~g~g-I~~L~~~I~~~l~~~~ 482 (494)
.+.+ +. ++++|||+++.| |+++++.|.+.+....
T Consensus 170 ~~~~-~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 170 AKQL-GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHH-TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHc-CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 4444 44 899999999998 9999999998876544
No 126
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=166.63 Aligned_cols=157 Identities=25% Similarity=0.298 Sum_probs=111.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+|+|.+|+|||||+++|++... ...+ .|.......+...+..+.++||||... +.......+..+|+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 235 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEETTEEEEEEECC------------CCSHHHHHTTEEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecCcEEEEEEECCCCHh-------HHHHHHHHhccCCE
Confidence 4799999999999999999987653 2223 366666677777888999999999654 22234456788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHc---CCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV---QGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~---~~~~ii~IS 460 (494)
+|+|+|+++ ...+.....++.++... ....+.|+|+|+||+|+.... ++...+.... .+.++++||
T Consensus 236 vilV~D~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 236 LIFVVDSND-------RERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp EEEEEETTC-------SSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred EEEEEECCc-------hHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEE
Confidence 999999987 35666666555554332 223478999999999997643 2222221111 234689999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|+++.||++|++.|.+.+.+.
T Consensus 308 Ak~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TTTTBTHHHHHHHHHHHHTC-
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999887653
No 127
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.71 E-value=2e-17 Score=156.32 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=106.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||...... + ....+..+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT----T---GGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH----H---HHhhccCC
Confidence 47999999999999999999986432 3333333333334445554 5789999999754211 1 22345789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----------------HHHHHH
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEEL 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----------------e~~~~L 447 (494)
|++++|+|+++ ..++..+ ..+..++..+. .+.|+|+|+||+|+.... +....+
T Consensus 101 d~~ilv~D~~~-------~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 101 DAVLICFDISR-------PETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp SEEEEEEETTC-------HHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 99999999987 2344554 45556665543 368999999999997421 222334
Q ss_pred HHHcCCCCEEEEEcc-cCCCHHHHHHHHHHHhc
Q 011082 448 ERRVQGVPIYPVCAV-LEEGVPELKVGLRMLVN 479 (494)
Q Consensus 448 ~~~~~~~~ii~ISA~-~g~gI~~L~~~I~~~l~ 479 (494)
.+.+...++++|||+ ++.|++++++.|.+.+-
T Consensus 171 ~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 171 AKQIGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 444434689999999 68999999999987653
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=1.4e-16 Score=148.64 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=101.9
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEe--e---cCcceEEecCCCccCCccccccchhhHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMN--F---DDIQITVADIPGLIKGAHENRGLGHAFLRH 380 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~--~---~~~~~~l~DtPGli~~a~~~~~L~~~fl~~ 380 (494)
..+|+|+|.+|||||||++.|++..... +..+.+++...+. + ....+.+|||||...... +......+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD----PTFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC----TTCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh----hhhhcccc
Confidence 4589999999999999999999853221 2222223333322 2 227899999999765211 11000466
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-------H----HHHHHH
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-------V----YEELER 449 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-------~----~~~L~~ 449 (494)
+..+|++|+|+|+++ ...+.+..+...+........+.|+++|+||+|+...+. + .+.+.+
T Consensus 93 ~~~~~~~i~v~d~~~--------~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 93 FRGTGALIYVIDAQD--------DYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp HHTCSEEEEEEETTS--------CCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCC--------chHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 788999999999987 233444444444433322234789999999999876431 1 122222
Q ss_pred H---cCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 450 R---VQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 450 ~---~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
. ..+.+++++||++ .||+++++.|.+.+
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 1 1245789999999 99999999998754
No 129
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=3.9e-17 Score=154.06 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=99.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec---CcceEEecCCCccCCccccccchh-hHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGH-AFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~---~~~~~l~DtPGli~~a~~~~~L~~-~fl~~i~ 382 (494)
.+|+|+|.+|||||||+++|++.. ....++.++ .....+.++ +..+.+|||||... +.. ....++.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 77 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQLLDRFKS 77 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCS--CEEEEEECSSTTCCEEEEEECCCCHH-------HHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccCCcc--eeeEEEEecCCCccEEEEEECCCChh-------HHHHHHHHHHh
Confidence 479999999999999999999764 334454333 333446666 46799999999864 222 1223467
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHH-HHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc-------
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRD-LIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV------- 451 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~-l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~------- 451 (494)
.+|++|+|+|+++. ......... +...+......-...|+++|+||+|+... +...+.+.+.+
T Consensus 78 ~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 151 (214)
T 2fh5_B 78 SARAVVFVVDSAAF------QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTR 151 (214)
T ss_dssp GEEEEEEEEETTTH------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred hCCEEEEEEECCCc------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccc
Confidence 89999999998751 011222222 22222221111236899999999999753 22333332211
Q ss_pred -----------------C-------------CCCEEEEEcccC------CCHHHHHHHHHHHh
Q 011082 452 -----------------Q-------------GVPIYPVCAVLE------EGVPELKVGLRMLV 478 (494)
Q Consensus 452 -----------------~-------------~~~ii~ISA~~g------~gI~~L~~~I~~~l 478 (494)
. ..+++++||+++ .||++++++|.+.+
T Consensus 152 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 152 SAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp C------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred hhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 1 456899999999 99999999998753
No 130
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.71 E-value=8.3e-17 Score=148.04 Aligned_cols=165 Identities=20% Similarity=0.232 Sum_probs=101.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccc----cccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE----NRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~----~~~L~~~fl~~i~ 382 (494)
.+|+++|.+|||||||+++|++........+.+|..+... .+. .+.++||||+...... ...+......++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999876666667666555433 333 7899999997432110 0011112223344
Q ss_pred h-hceeeEEEecCCCCCCCCCCCCHHHH-HHHHH--------HHHhhhcccCCCCEEEEEeCCCcCChH-HHHHHHHHHc
Q 011082 383 R-TKVLAYVVDLASGLDGRKGIKPWKQL-RDLII--------ELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELERRV 451 (494)
Q Consensus 383 ~-ad~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~--------eL~~~~~~l~~~P~IlVlNKiDl~~~~-e~~~~L~~~~ 451 (494)
. ++.+++|+++.+. ...... ..+.. ++..+.. ....|+++|+||+|+.... +..+.+.+.+
T Consensus 78 ~~~~~~~~v~~v~d~-------~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 149 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDG-------KAAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIKNVQEVINFLAEKF 149 (190)
T ss_dssp HHGGGCCEEEEEEET-------THHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred hhhccCCEEEEEEcc-------hhhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccCcHHHHHHHHHHHh
Confidence 3 5544444444331 222222 22211 1111111 1368999999999998753 3455555555
Q ss_pred CC------CCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 452 QG------VPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 452 ~~------~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
.. .+++++||+++.|+++++++|.+.+.+...
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 21 247999999999999999999998876544
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=155.86 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=107.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCccccc--ceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHH-
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYS--FTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE- 382 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~--ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~- 382 (494)
..+|+|||.+|||||||+|+|++.......++ ++|..+....+.+++..+.++||||+.+.......+...+...+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 34799999999999999999999877766666 788888888888999999999999998754433333344544444
Q ss_pred ---hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHH-hhhcccCCCCEEEEEeCCCcCChHH----------HHHHHH
Q 011082 383 ---RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELE-HHQEGLSDRPSLVVANKIDEDGAEE----------VYEELE 448 (494)
Q Consensus 383 ---~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~-~~~~~l~~~P~IlVlNKiDl~~~~e----------~~~~L~ 448 (494)
.+|++|+|+|++.. .. .... ++..+. .+... ..+|+|+|+||+|+..... .++.+.
T Consensus 109 ~~~~~~~~l~v~d~~~~-------~~-~~~~-~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRY-------TE-EEHK-ATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp TTTCCSEEEEEEETTCC-------SS-HHHH-HHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred cCCCCcEEEEEeeCCCC-------CH-HHHH-HHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence 35999999998752 22 2222 222222 22111 2469999999999875432 223333
Q ss_pred HHcCCCCEEEEEccc-----CCCHHHHHHHHHHHhccc
Q 011082 449 RRVQGVPIYPVCAVL-----EEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~-----g~gI~~L~~~I~~~l~~~ 481 (494)
+.+ +..++++++.. ..++.+|++.|..++.+.
T Consensus 179 ~~~-~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 179 DIF-GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHH-SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHc-CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 444 34677777653 368999999999988654
No 132
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.70 E-value=7.8e-17 Score=150.48 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=107.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCc--ceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~--~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+|||.+|||||||+++|++... ....++.++.+.....+.+++. .+.++||+|.... ...+. ..++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---~~~~~---~~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE---NEWLH---DHCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTTG---GGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch---hhhHH---Hhhccc
Confidence 4799999999999999999997433 3345555555555566777763 5678999986431 11121 234667
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ..++.....+...+.... ...+.|+|+|.||+|+.... +....+...+ +.+++++
T Consensus 81 ~~~~i~v~dv~~-------~~s~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~-~~~~~e~ 151 (192)
T 2cjw_A 81 GDAYLIVYSITD-------RASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF-DXKFIET 151 (192)
T ss_dssp CSEEEEEEETTC-------HHHHHHHHHHHHHHHHHT-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEEC
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhh-CCCCCeEEEEEechhhhccccccHHHHHHHHHHh-CCceEEe
Confidence 899999999987 345666666655554432 12368999999999986421 1122233333 5689999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.||+++++.|.+.+..
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHh
Confidence 999999999999999887743
No 133
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.69 E-value=1.2e-16 Score=160.81 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=114.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeec-CcceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++|++.. +...+++.+|.+...+.+.++ +..+.+|||||....... .+.......+..+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~~a 81 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN--YFTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH--HHTTTHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh--hhhhHHHHHhccC
Confidence 379999999999999999988763 456778899999998888774 478999999998642100 0012233456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH----------HHHHHHHcC--
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------YEELERRVQ-- 452 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~----------~~~L~~~~~-- 452 (494)
|++|+|+|+++ ..+...+..+...+..+.....+.|+++|+||+|+...+.. ...+.+.+.
T Consensus 82 d~vi~V~D~t~-------~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 82 QVLIHVFDVES-------TEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp SEEEEEEETTC-------SCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEEEECCC-------hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 99999999987 35566665554444433222347899999999999873221 122333322
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
..+++++||++ .++.+++..+...+
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 37899999999 78888877776543
No 134
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=1.4e-17 Score=158.28 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=108.9
Q ss_pred ceeeeeCCCCCcHHHHHHH-HHcCC-CCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGA-ISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~-Lt~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|||||||+++ +.+.. ........+|.......+......+.++||||.... .......+..+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF-------GGLRDGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT-------SCCCHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH-------hHHHHHHHhcC
Confidence 3799999999999999999 44431 222344444544444333333467899999997542 22233556789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH--HHHHHHHHcCCCCEEEEEcc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e--~~~~L~~~~~~~~ii~ISA~ 462 (494)
|++++|+|+++ ..++..+..+..++..+. .+.|+|+|+||+|+.+... ....+.+.. +.+++++||+
T Consensus 89 ~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 157 (221)
T 3gj0_A 89 QCAIIMFDVTS-------RVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-NLQYYDISAK 157 (221)
T ss_dssp CEEEEEEETTC-------HHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSCGGGCCHHHHH-TCEEEECBGG
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECCccccccccHHHHHHHHHc-CCEEEEEeCC
Confidence 99999999987 244555666666665543 3789999999999975321 111122222 5689999999
Q ss_pred cCCCHHHHHHHHHHHhcccC
Q 011082 463 LEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~~~ 482 (494)
++.|+++++++|.+.+....
T Consensus 158 ~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GTBTTTHHHHHHHHHHHTCT
T ss_pred CCCCHHHHHHHHHHHHHhCc
Confidence 99999999999998876543
No 135
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=152.80 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=107.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHH--HH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLR--HI 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~--~i 381 (494)
.+|+|||.+|||||||++++++... ....++.++.+.....+.+++ ..+.++||+|... . ..++. ++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~-------~-~~~l~~~~~ 109 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-------E-NEWLHDHCM 109 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-------H-HHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc-------h-hhhHHHHHH
Confidence 4799999999999999999997543 234455555555556667776 3568899998642 0 11221 23
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIY 457 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii 457 (494)
..++++++|+|+++ ..++.....+..++.... ...+.|+|+|+||+|+... .+....+...+ +.+++
T Consensus 110 ~~a~~~ilVydvt~-------~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~-~~~~~ 180 (211)
T 2g3y_A 110 QVGDAYLIVYSITD-------RASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF-DCKFI 180 (211)
T ss_dssp CCCSEEEEEEETTC-------HHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEE
T ss_pred hhCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc-CCEEE
Confidence 45799999999987 345666666666555432 1236899999999999642 12222333333 46899
Q ss_pred EEEcccCCCHHHHHHHHHHHhcc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
++||++++||+++++.|.+.+..
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887743
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=2.6e-17 Score=174.59 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=101.2
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccc-cccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~-~~~L~~~fl~~i~~ 383 (494)
.++|+|||.+|||||||+|+|++.+. .+.+++++|.+...+.+...+..+.++||||+...... ...+......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 46899999999999999999998754 46788999999999988888899999999998642211 11233344567789
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEccc
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVL 463 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~ 463 (494)
+|++|+|+|..... . .....+...+.. .++|+|+|+||+|+.........+.. +....++++||++
T Consensus 103 ad~il~VvD~~~~~------~--~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~~~~~e~~~-lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 103 ADVIIFMVNGREGV------T--AADEEVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYS-LGFGEPYPISGTH 168 (456)
T ss_dssp CSEEEEEEESSSCS------C--HHHHHHHHHHTT-----CCSCEEEEEECC---------CCSGG-GSSSSEEECCTTT
T ss_pred CCEEEEEEeCCCCC------C--hHHHHHHHHHHH-----cCCCEEEEEECccchhhhhhHHHHHH-cCCCceEEeeccc
Confidence 99999999987621 1 222333333322 47899999999998754322111111 1223678999999
Q ss_pred CCCHHHHHHHHHHHhccc
Q 011082 464 EEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 464 g~gI~~L~~~I~~~l~~~ 481 (494)
+.|+++|++.+.+.+...
T Consensus 169 g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp CTTHHHHHHHHHTTGGGS
T ss_pred ccchHHHHHHHHhhcccc
Confidence 999999999998887643
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.68 E-value=2.1e-17 Score=173.47 Aligned_cols=159 Identities=24% Similarity=0.281 Sum_probs=114.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCc-ceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~-~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|.+|+|||||+++|++... .+.+++++|.++....+.+.+. .+.++||||+.+...............+..+
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 4799999999999999999998865 4678899999999999988875 8999999999875444333344556778889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH--HHHHHHHHcCCCCEEEEEcc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e--~~~~L~~~~~~~~ii~ISA~ 462 (494)
|++|+|+|++. ......++.++..+ +.|+|+|+||+|+..... ..+.+.+. .+.+++++||+
T Consensus 115 D~vllVvD~~~----------~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~~~~~~l~~~-~g~~v~~vSAk 178 (423)
T 3qq5_A 115 DCGILVTDSAP----------TPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAEELKGLYESR-YEAKVLLVSAL 178 (423)
T ss_dssp SEEEEECSSSC----------CHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCTHHHHHSSCC-TTCCCCCCSSC
T ss_pred CEEEEEEeCCC----------hHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHHHHHHHHHHH-cCCCEEEEECC
Confidence 99999999832 13445566666543 789999999999976532 22233222 25689999999
Q ss_pred cCCCHHHHHHHHHHHhccc
Q 011082 463 LEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~~ 481 (494)
++.|++++++.|.+.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999998654
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.67 E-value=3e-16 Score=163.86 Aligned_cols=159 Identities=24% Similarity=0.259 Sum_probs=110.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-Ccccccceeecce--------------eeEEe-----ecCcceEEecCCCccC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPN--------------LGNMN-----FDDIQITVADIPGLIK 365 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~--------------~g~v~-----~~~~~~~l~DtPGli~ 365 (494)
..+|+++|.+|+|||||+++|++... ....+..+|.... ..... .....+.++||||+.+
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 34799999999999999999998532 2223333332110 00000 1115789999999754
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--- 442 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e--- 442 (494)
+...+...+..+|++|+|+|+++. .+..+...++..+..+ ..+|.|+|+||+|+.+.++
T Consensus 88 -------~~~~~~~~~~~~D~~ilVvda~~~-------~~~~qt~~~~~~~~~~----~~~~iivviNK~Dl~~~~~~~~ 149 (403)
T 3sjy_A 88 -------LMATMLSGAALMDGAILVVAANEP-------FPQPQTREHFVALGII----GVKNLIIVQNKVDVVSKEEALS 149 (403)
T ss_dssp -------GHHHHHHHHTTCSEEEEEEETTSC-------SSCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCC-------CCcHHHHHHHHHHHHc----CCCCEEEEEECccccchHHHHH
Confidence 556677888899999999999873 2234455554444332 2468999999999987653
Q ss_pred HHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 443 VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 443 ~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
..+.+.+.+ ...+++++||+++.|+++|++.|.+.+....
T Consensus 150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 334444443 2568999999999999999999999776543
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.67 E-value=2.7e-16 Score=167.94 Aligned_cols=153 Identities=25% Similarity=0.324 Sum_probs=106.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC-------CCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK-------PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLR 379 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~-------~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~ 379 (494)
.+|+++|.+|+|||||+++|++.. ......+.+|++.....+.+++..+.++||||+.+ +...+..
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHHH
Confidence 479999999999999999999875 12334456777777777788888999999999854 4455667
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHc-----
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV----- 451 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~----- 451 (494)
.+..+|++|+|+|+++.. ..+....+..+.. ...|.|+|+||+|+.+.+. ..+++.+.+
T Consensus 93 ~~~~aD~~ilVvda~~g~--------~~qt~e~l~~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~ 159 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGP--------KTQTGEHMLILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHN 159 (482)
T ss_dssp HTTSCCEEEEEEETTTCS--------CHHHHHHHHHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHhhCCEEEEEEecCCCc--------cHHHHHHHHHHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcc
Confidence 778899999999998631 1222222222222 3678899999999987432 233333322
Q ss_pred -CCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 452 -QGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 452 -~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
...+++++||++++|+++|++.|.+.+.
T Consensus 160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 160 LKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2568999999999999999999999775
No 140
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.50 E-value=3.5e-18 Score=160.26 Aligned_cols=155 Identities=19% Similarity=0.233 Sum_probs=103.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++ ..+.+|||||..+.. ......+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQ 101 (204)
Confidence 35799999999999999999986533 34444555444444455554 456799999986522 223345778
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH-------------H---H
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY-------------E---E 446 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~-------------~---~ 446 (494)
+|++++|+|+++. .++.... .+...+..+. .+.|+++|+||+|+....... + .
T Consensus 102 ~d~iilv~D~~~~-------~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 102 TDVFLICFSLVSP-------ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 9999999999873 3344443 4444444332 268999999999997542111 1 1
Q ss_pred HHHHcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 447 LERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 447 L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
+.+.....+++++||+++.|++++++.|.+.+
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 11111112789999999999999999987653
No 141
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.67 E-value=2.6e-16 Score=145.31 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=99.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCC-CCccccccee-ecceeeEEee-----cCcceEEecCCCccCCccccccchhhHHHH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTT-LRPNLGNMNF-----DDIQITVADIPGLIKGAHENRGLGHAFLRH 380 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftT-l~p~~g~v~~-----~~~~~~l~DtPGli~~a~~~~~L~~~fl~~ 380 (494)
+|+|+|.+|||||||+++|++.. +....+..|+ .+.....+.+ ....+.+|||+|..+... + ...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~ 76 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----T---HPHF 76 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----T---SHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----h---hHHH
Confidence 69999999999999999999863 3333332221 1211112211 236789999999754211 1 2344
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH---HHHHHHc---CCC
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY---EELERRV---QGV 454 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~---~~L~~~~---~~~ 454 (494)
+..++++++|+|+++. ..+...+..++.++.... .+.|+|+|+||+|+....... ..+.+.+ .+.
T Consensus 77 ~~~~~~~i~v~d~~~~------~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 77 MTQRALYLAVYDLSKG------QAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HHHSEEEEEEEEGGGC------HHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred ccCCcEEEEEEeCCcc------hhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 6778999999999862 123445555666554432 368999999999998754322 2222222 234
Q ss_pred C----EEEEEcccCC-CHHHHHHHHHHHhcccC
Q 011082 455 P----IYPVCAVLEE-GVPELKVGLRMLVNGEK 482 (494)
Q Consensus 455 ~----ii~ISA~~g~-gI~~L~~~I~~~l~~~~ 482 (494)
+ ++++||+++. ++++|++.|.+.+.+..
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 4 8999999996 99999999988876543
No 142
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.67 E-value=1.8e-16 Score=148.34 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=109.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|++|||||||+++|++........+..+.++..+.+.+++ ..+.++||||..... .+ ....+..+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~---~~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----RI---TSAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----CC---CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh----hh---hHHHHhcC
Confidence 4799999999999999999999765444445455667778888887 457889999975421 12 22345678
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
+++++|+|+++. ........+..++... .....|+++|+||+|+... .+....+... ++..++.+|
T Consensus 79 ~~~i~v~d~~~~-------~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-~~~~~~d~S 148 (199)
T 2f9l_A 79 VGALLVYDIAKH-------LTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-NNLSFIETS 148 (199)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEEECC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-cCCeEEEEe
Confidence 999999998862 2334444444444332 1236799999999999642 1222333333 467889999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|++++++.|.+.+.+
T Consensus 149 al~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 143
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.67 E-value=1.8e-16 Score=159.20 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=110.8
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc--ceEEecCCCccCCccccccchhhHHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
...+|+++|.+|+|||||++++++... ...+..|+.+.....+.+++. .+.++||||..... ......+.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 225 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYP 225 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGCT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhcc
Confidence 446899999999999999999997643 455666666666666666664 45699999986522 22234467
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH----------------HH
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YE 445 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~----------------~~ 445 (494)
.+|++++|+|+++. .++..+. .+...+..+. .+.|+++|+||+|+...... ..
T Consensus 226 ~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 226 QTDVFLICFSLVSP-------ASFHHVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp TCSEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred CCCEEEEEEeCCCH-------HHHHHHHHHHHHHHHhhC---CCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 89999999999872 3444443 4445555443 27899999999999654221 12
Q ss_pred HHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 446 ELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 446 ~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.+.+.....++++|||+++.|++++++.|.+.+..
T Consensus 296 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 296 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 22233322389999999999999999999887643
No 144
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.66 E-value=1.2e-16 Score=172.66 Aligned_cols=157 Identities=21% Similarity=0.243 Sum_probs=106.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC------CCcccccceeecceeeEEeec----CcceEEecCCCccCCccccccchhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK------PAVGHYSFTTLRPNLGNMNFD----DIQITVADIPGLIKGAHENRGLGHA 376 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~------~~i~~~~ftTl~p~~g~v~~~----~~~~~l~DtPGli~~a~~~~~L~~~ 376 (494)
.+|+|||.+|||||||+++|++.. +.++.+.+++..++.+.+.++ +..+.++||||..... .+..
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----~~~~- 116 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----ASHQ- 116 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT----TTCH-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH----HHHH-
Confidence 479999999999999999999875 344455555555555555544 3789999999964421 1222
Q ss_pred HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HHHHHHHHc--CC
Q 011082 377 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRV--QG 453 (494)
Q Consensus 377 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~~~L~~~~--~~ 453 (494)
..+..+|++|+|+|++.. +....+..++..+.+ +.|+|+|+||+|+....+ ..+.+++.+ .+
T Consensus 117 --~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 181 (535)
T 3dpu_A 117 --FFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKKINERFPAIE 181 (535)
T ss_dssp --HHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT
T ss_pred --HHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHHHHHHHHhcC
Confidence 346679999999998762 445667777776643 689999999999975322 122333333 24
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
.++++|||+++.|+++|++.|.+.+.+...
T Consensus 182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 182 NRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred CceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 579999999999999999999998876543
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.66 E-value=2.1e-16 Score=154.52 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=111.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccc--eeecceeeEEeecCcceEEecCCCccCCccccccc----hhhHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSF--TTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL----GHAFLR 379 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~f--tTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L----~~~fl~ 379 (494)
..+|+|+|.+|||||||+++|++....+..+.. +|.....+.+.+++..+.++||||+.........+ ...+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999998755544433 67777778888888999999999998643322111 112233
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEe-CCCcCChH--HH--------HHHHH
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN-KIDEDGAE--EV--------YEELE 448 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlN-KiDl~~~~--e~--------~~~L~ 448 (494)
.+..+|++|+|+|++.. . .....++..+..+...-...|.|+|+| |+|+.... .. ...+.
T Consensus 102 ~~~~~d~il~V~d~~~~-------~--~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGRY-------T--SQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HTTCCSEEEEEEETTCC-------C--HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred cCCCCcEEEEEEeCCCC-------C--HHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHH
Confidence 45678999999998751 1 122233333333321112468888887 99997531 10 11122
Q ss_pred HHcCC----CCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 449 RRVQG----VPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 449 ~~~~~----~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+.+.. ...+++||+++.|+++|++.|.+++....
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 33321 11178999999999999999999887644
No 146
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=1.5e-15 Score=157.77 Aligned_cols=92 Identities=36% Similarity=0.582 Sum_probs=84.0
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecC-----------------cceEEecCCCccC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDD-----------------IQITVADIPGLIK 365 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~-----------------~~~~l~DtPGli~ 365 (494)
..+..|+|||+||||||||+|+|++... .+++|||||++|+.|.+.+++ ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4456899999999999999999999887 789999999999999999886 2579999999999
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCC
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLAS 395 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~ 395 (494)
+++.+.+++..|+.+++.+|.+++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999888899999999999999999999875
No 147
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.65 E-value=3.7e-16 Score=145.60 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=110.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc--ceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|+|+|++|||||||+++|++........+..+.+...+.+.+++. .+.++||+|..+... + ....+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~---~~~~~~~ 101 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA----I---TSAYYRG 101 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC----C---CHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh----h---hHHHhhc
Confidence 357999999999999999999998655555555666677888888885 456799999865211 1 2344567
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
++.+++|+|+++. ..++.+..+..++.... ....|+++|+||+|+.+. .+....+... ++..++.+
T Consensus 102 ~~~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-~~~~~ld~ 171 (191)
T 1oix_A 102 AVGALLVYDIAKH-------LTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-NGLSFIET 171 (191)
T ss_dssp CCEEEEEEETTCH-------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEEC
T ss_pred CCEEEEEEECcCH-------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEE
Confidence 8899999998762 23333444444443321 236799999999998642 1223333333 46788999
Q ss_pred EcccCCCHHHHHHHHHHHh
Q 011082 460 CAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l 478 (494)
||+++.|++++++.|.+.+
T Consensus 172 Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 172 SALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=6.4e-16 Score=152.79 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=89.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCccccc------ceeecceeeEEee--cC--cceEEecCCCccCCcccccc----
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYS------FTTLRPNLGNMNF--DD--IQITVADIPGLIKGAHENRG---- 372 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~------ftTl~p~~g~v~~--~~--~~~~l~DtPGli~~a~~~~~---- 372 (494)
.+|+|+|.+|||||||+|+|++......+++ .+|+........+ ++ ..+.++||||+.........
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 3799999999999999999998877766663 5555555444443 33 37899999999543221111
Q ss_pred ---chhhHHHHHHh-------------hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 011082 373 ---LGHAFLRHIER-------------TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 436 (494)
Q Consensus 373 ---L~~~fl~~i~~-------------ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiD 436 (494)
+..+|..++.. +|+++++++.+.. ........++..+.. ..|+|+|+||+|
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-------~~~~~d~~~l~~l~~------~~pvi~V~nK~D 155 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-------GLKPLDIEFMKRLHE------KVNIIPLIAKAD 155 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-------SCCHHHHHHHHHHTT------TSCEEEEESSGG
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-------CCCHHHHHHHHHHhc------cCCEEEEEeccC
Confidence 11222333433 5688888876541 111222334444421 689999999999
Q ss_pred cCChHHHH---HHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 437 EDGAEEVY---EELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 437 l~~~~e~~---~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
+....+.. +.+.+.+ .+.+++.+||.+++|++++++.|.+.+.
T Consensus 156 ~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 156 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 98765432 2333333 4678899999999999999999988764
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.63 E-value=6.5e-16 Score=166.58 Aligned_cols=125 Identities=21% Similarity=0.284 Sum_probs=89.0
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCC----------------CCccc------ccceeecceeeEEeecCcceEEecCCC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAK----------------PAVGH------YSFTTLRPNLGNMNFDDIQITVADIPG 362 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~----------------~~i~~------~~ftTl~p~~g~v~~~~~~~~l~DtPG 362 (494)
...+|+|+|.+|||||||+++|+... ....+ .++.|+......+.+.+..+.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 34589999999999999999996211 11111 245677777788888889999999999
Q ss_pred ccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--
Q 011082 363 LIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-- 440 (494)
Q Consensus 363 li~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-- 440 (494)
+.+ +.......+..+|++|+|+|+++. .. .+...++..+.. .+.|+|+|+||+|+...
T Consensus 92 ~~d-------f~~~~~~~l~~aD~allVvDa~~g-------~~-~~t~~~~~~~~~-----~~iPiivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 92 HAD-------FTEDTYRTLTAVDSALMVIDAAKG-------VE-PRTIKLMEVCRL-----RHTPIMTFINKMDRDTRPS 151 (528)
T ss_dssp STT-------CCHHHHHGGGGCSEEEEEEETTTC-------SC-HHHHHHHHHHHT-----TTCCEEEEEECTTSCCSCH
T ss_pred chh-------HHHHHHHHHHhCCEEEEEEeCCCC-------CC-HHHHHHHHHHHH-----cCCCEEEEEeCCCCccccH
Confidence 876 444566778899999999999873 12 233344444433 36899999999999753
Q ss_pred HHHHHHHHH
Q 011082 441 EEVYEELER 449 (494)
Q Consensus 441 ~e~~~~L~~ 449 (494)
.+.++.+.+
T Consensus 152 ~~~l~ei~~ 160 (528)
T 3tr5_A 152 IELLDEIES 160 (528)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 234444444
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.62 E-value=2.1e-15 Score=159.16 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=102.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc-------------------------------ccccceeecceeeEEeecCcc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------------GHYSFTTLRPNLGNMNFDDIQ 354 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 354 (494)
..+|+++|.+|+|||||+++|+.....+ ...+..|.+.....+..++..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 3479999999999999999995542111 111456777777777888889
Q ss_pred eEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEe
Q 011082 355 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVAN 433 (494)
Q Consensus 355 ~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlN 433 (494)
+.++||||+.+ +...+...+..+|++|+|+|+++.... .+.....+....+..+.. ...| .|+|+|
T Consensus 97 ~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e-~~~~~~~qt~e~l~~~~~-----~~v~~iIvviN 163 (439)
T 3j2k_7 97 FTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEFE-TGFEKGGQTREHAMLAKT-----AGVKHLIVLIN 163 (439)
T ss_pred EEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCccc-cccCCCchHHHHHHHHHH-----cCCCeEEEEee
Confidence 99999999865 455667778899999999999873210 000001122222222221 2456 889999
Q ss_pred CCCcCCh-------HHHHHHHHHHc--------CCCCEEEEEcccCCCHHHHHH
Q 011082 434 KIDEDGA-------EEVYEELERRV--------QGVPIYPVCAVLEEGVPELKV 472 (494)
Q Consensus 434 KiDl~~~-------~e~~~~L~~~~--------~~~~ii~ISA~~g~gI~~L~~ 472 (494)
|+|+... ++..+++...+ ...+++++||++|.|++++.+
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999642 12223333322 145799999999999999655
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.62 E-value=2.3e-15 Score=157.37 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=105.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC---cccccceeecceeeEEee---------------c--------CcceEEecC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNF---------------D--------DIQITVADI 360 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~---i~~~~ftTl~p~~g~v~~---------------~--------~~~~~l~Dt 360 (494)
.+|+++|.+|+|||||+++|++.... ....+..|++.......+ + ...+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 47999999999999999999975321 111233454433222221 1 157899999
Q ss_pred CCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 361 PGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 361 PGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
||+.+ +...+...+..+|++|+|+|+++.. +..+....+..+..+ ...|.|+|+||+|+.+.
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~----~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII----GQKNIIIAQNKIELVDK 152 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCH
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc----CCCcEEEEEECccCCCH
Confidence 99754 4445556667789999999998631 112222222223222 23688999999999876
Q ss_pred HH---HHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 441 EE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 441 ~e---~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+. ..+++.+.+ ...+++++||+++.|+++|++.|...+...
T Consensus 153 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 153 EKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 43 344555544 356899999999999999999999877643
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.61 E-value=3.3e-15 Score=154.37 Aligned_cols=143 Identities=13% Similarity=0.136 Sum_probs=108.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|.+|+|||||+++|+ ....|.+.....+..++..+.++||||+.+ +.......+..+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~-------f~~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK-------TLKSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTT-------CHHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHH-------HHHHHHHHHHHCCEE
Confidence 89999999999999999998 345666666666777778899999999865 455567778899999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCE-EEEEe-CCCcCChHH---HHHHHHHHcC-----CCCEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS-LVVAN-KIDEDGAEE---VYEELERRVQ-----GVPIY 457 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~-IlVlN-KiDl~~~~e---~~~~L~~~~~-----~~~ii 457 (494)
|+|+| .. ....+...++..+.. ...|. |+|+| |+|+ +.+. ..+++++.+. ..+++
T Consensus 88 ilVvd-~~--------g~~~qt~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii 152 (370)
T 2elf_A 88 VLCIP-PQ--------GLDAHTGECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECI 152 (370)
T ss_dssp EEEEC-TT--------CCCHHHHHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEE
T ss_pred EEEEc-CC--------CCcHHHHHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999 64 233444444444332 25677 88899 9999 6432 2345555542 36899
Q ss_pred E--EEccc---CCCHHHHHHHHHHHhcc
Q 011082 458 P--VCAVL---EEGVPELKVGLRMLVNG 480 (494)
Q Consensus 458 ~--ISA~~---g~gI~~L~~~I~~~l~~ 480 (494)
+ +||++ ++|+++|++.|.+.+..
T Consensus 153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 153 SLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhhccc
Confidence 9 99999 99999999999988764
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.60 E-value=3.3e-15 Score=155.93 Aligned_cols=155 Identities=22% Similarity=0.246 Sum_probs=105.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC---CC---Cccc-----------ccceeecceeeEEeecCcceEEecCCCccCCccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA---KP---AVGH-----------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 369 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~---~~---~i~~-----------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~ 369 (494)
.+|+++|.+|+|||||+++|++. .- .... ....|.+.....+...+..+.++||||+.+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~---- 87 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD---- 87 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG----
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH----
Confidence 47999999999999999999873 10 0000 233455444444555568899999999875
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHHH----H
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEV----Y 444 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e~----~ 444 (494)
+.......+..+|++|+|+|+++. ...+...++..+.. .+.| .|+|+||+|+....+. .
T Consensus 88 ---f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~-----~~ip~iivviNK~Dl~~~~~~~~~~~ 151 (405)
T 2c78_A 88 ---YIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQ-----VGVPYIVVFMNKVDMVDDPELLDLVE 151 (405)
T ss_dssp ---GHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHH-----TTCCCEEEEEECGGGCCCHHHHHHHH
T ss_pred ---HHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCEEEEEEECccccCcHHHHHHHH
Confidence 445566778889999999999873 12334444444332 2567 7889999999853221 2
Q ss_pred HHHHHHc---C----CCCEEEEEcccCCC------------------HHHHHHHHHHHhccc
Q 011082 445 EELERRV---Q----GVPIYPVCAVLEEG------------------VPELKVGLRMLVNGE 481 (494)
Q Consensus 445 ~~L~~~~---~----~~~ii~ISA~~g~g------------------I~~L~~~I~~~l~~~ 481 (494)
+++.+.+ . ..+++++||+++.| +++|++.|..++...
T Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 2232222 1 36899999999987 889999998887643
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.60 E-value=3.1e-15 Score=156.42 Aligned_cols=158 Identities=22% Similarity=0.280 Sum_probs=96.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCC---cccccceeecceeeEEee---------------c--------CcceEEec
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNF---------------D--------DIQITVAD 359 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~---i~~~~ftTl~p~~g~v~~---------------~--------~~~~~l~D 359 (494)
..+|+++|.+++|||||+++|++.... ....+..|++.......+ + ...+.++|
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 347999999999999999999975321 111233344433222111 1 15789999
Q ss_pred CCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 360 IPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 360 tPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
|||+.. +...+...+..+|++|+|+|+++.. +..+....+..+.. +...|.|+|+||+|+.+
T Consensus 88 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~----l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 88 SPGHET-------LMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMALEI----LGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp CSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHHHHH----TTCCCEEEEEECTTSSC
T ss_pred CCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHHHHH----cCCCeEEEEEEccCCCC
Confidence 999754 3334445556679999999998631 11222222222222 22468999999999976
Q ss_pred hH---HHHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 440 AE---EVYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 440 ~~---e~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
.+ +..+++.+.+ ...+++++||++++|+++|++.|...+...
T Consensus 150 ~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 150 EKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp TTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 43 2344455443 356899999999999999999999877653
No 155
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=155.97 Aligned_cols=116 Identities=29% Similarity=0.536 Sum_probs=71.3
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-----------------ceEEecCCCccCC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKG 366 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-----------------~~~l~DtPGli~~ 366 (494)
....+|+|||.||||||||+|+|++.+..++++||+|++|+.|.+.+++. .+.++||||+.++
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 44568999999999999999999999888899999999999999988762 3899999999999
Q ss_pred ccccccchhhHHHHHHhhceeeEEEecCCCCC---CCCCCCCHHHHHHHHHHHHhh
Q 011082 367 AHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHH 419 (494)
Q Consensus 367 a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~~~ 419 (494)
++.+.+++..|+.+++.+|++++|+|+++... .....+|...+..+..+|..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~ 155 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLK 155 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhh
Confidence 98888899999999999999999999986321 011136677777776666543
No 156
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=146.49 Aligned_cols=166 Identities=15% Similarity=0.147 Sum_probs=102.9
Q ss_pred ceeeeeCCC---------CCcHHHHHHHHHcC--CCCccccccee--ecceeeEEe--------------ecC--cceEE
Q 011082 307 ADVGLVGMP---------SAGKSTLLGAISRA--KPAVGHYSFTT--LRPNLGNMN--------------FDD--IQITV 357 (494)
Q Consensus 307 ~~V~LVG~~---------nAGKSTLLn~Lt~~--~~~i~~~~ftT--l~p~~g~v~--------------~~~--~~~~l 357 (494)
.+|+|||.+ |||||||+++|++. .....++..|| .+.....+. +++ ..+.+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i 99 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHI 99 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEE
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEE
Confidence 479999999 99999999999984 23334444443 222222211 222 56777
Q ss_pred ec------CCCccCCccc--------------------------cccchhhHHHHH-----HhhceeeEEEecCCCCCCC
Q 011082 358 AD------IPGLIKGAHE--------------------------NRGLGHAFLRHI-----ERTKVLAYVVDLASGLDGR 400 (494)
Q Consensus 358 ~D------tPGli~~a~~--------------------------~~~L~~~fl~~i-----~~ad~ll~VvD~s~~~~~~ 400 (494)
|| |||+...... ..++...|.+++ ..||++|+|+|+++..
T Consensus 100 ~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~--- 176 (255)
T 3c5h_A 100 VEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM--- 176 (255)
T ss_dssp EEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-----
T ss_pred EEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc---
Confidence 87 5554332110 001111111111 1589999999998710
Q ss_pred CCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHH---cCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 401 KGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERR---VQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 401 ~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~---~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
..+++.+..++.++..+.. ..+.|+|+|+||+|+...... +...+. ..+.+++++||+++.|+++++++|.+.
T Consensus 177 --~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 --NRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 0467777777777655411 136899999999999865433 223222 236789999999999999999999887
Q ss_pred hc
Q 011082 478 VN 479 (494)
Q Consensus 478 l~ 479 (494)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.59 E-value=1e-16 Score=172.62 Aligned_cols=156 Identities=23% Similarity=0.190 Sum_probs=111.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEee-cCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF-DDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~-~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..++|+++|.+|+|||||+++|++........+++|.+.....+.+ ++..+.++||||+.... ......+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-------~~~~~~~~~ 75 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-------AMRARGTQV 75 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-------TSBBSSSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-------HHHHHHHcc
Confidence 3568999999999999999999987655566777888777777766 45789999999976522 222334567
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHHHc-------CCC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRV-------QGV 454 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~~-------~~~ 454 (494)
+|++|+|+|+++. ...+....+..+.. .+.|+|+|+||+|+.+.+ .....+.... ...
T Consensus 76 aD~vILVVDa~dg--------~~~qt~e~l~~~~~-----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 76 TDIVILVVAADDG--------VMKQTVESIQHAKD-----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp BSSCEEECBSSSC--------CCHHHHHHHHHHHT-----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred CCEEEEEEECCCC--------ccHHHHHHHHHHHH-----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 9999999999873 12233333333322 367999999999997532 1122222221 134
Q ss_pred CEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 455 PIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+++++||++|.|+++|++.|..++..
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCchhHHHHHHHhhhc
Confidence 78999999999999999999988754
No 158
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=4.5e-15 Score=148.78 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=99.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCc------cccc---ceeecce-------------------------------
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAV------GHYS---FTTLRPN------------------------------- 344 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i------~~~~---ftTl~p~------------------------------- 344 (494)
..+.|+|+|.+|||||||+|+|++..... ...| .+|..+.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 35689999999999999999999975421 1222 1222100
Q ss_pred -------e----e------EE--ee-cCcceEEecCCCccCCcc------ccccchhhHHHHHHhhceeeEEEecCCCCC
Q 011082 345 -------L----G------NM--NF-DDIQITVADIPGLIKGAH------ENRGLGHAFLRHIERTKVLAYVVDLASGLD 398 (494)
Q Consensus 345 -------~----g------~v--~~-~~~~~~l~DtPGli~~a~------~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~ 398 (494)
. + .+ .. .+..+.++||||+..... ....+......++..+|++++|+|.+....
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 0 00 11 236799999999975321 111233445677889999999999754110
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HHHHHHHHcCC--CCEEEE---Eccc---CCCHHH
Q 011082 399 GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRVQG--VPIYPV---CAVL---EEGVPE 469 (494)
Q Consensus 399 ~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~~~L~~~~~~--~~ii~I---SA~~---g~gI~~ 469 (494)
.. .....+...+. -...|+|+|+||+|+..... ..+.+...+.. ..++++ ||.+ +.|+++
T Consensus 183 -----~~-~~~~~i~~~~~-----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~ 251 (315)
T 1jwy_B 183 -----AN-SDALQLAKEVD-----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRE 251 (315)
T ss_dssp -----TT-CSHHHHHHHHC-----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHH
T ss_pred -----hh-hHHHHHHHHhC-----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHH
Confidence 10 11112333331 13689999999999975433 23444332211 345555 5555 789999
Q ss_pred HHHHHHHHhcccC
Q 011082 470 LKVGLRMLVNGEK 482 (494)
Q Consensus 470 L~~~I~~~l~~~~ 482 (494)
+++.+.+++....
T Consensus 252 l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 252 SLKSEILYFKNHP 264 (315)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987654
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=2.2e-15 Score=160.86 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=99.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-------------------------------cccccceeecceeeEEeecCcce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-------------------------------VGHYSFTTLRPNLGNMNFDDIQI 355 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-------------------------------i~~~~ftTl~p~~g~v~~~~~~~ 355 (494)
.+|+++|.+|+|||||+++|++.... ....++.|.+.....+..++..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 47999999999999999999754111 11223566666667777777899
Q ss_pred EEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCC
Q 011082 356 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 435 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKi 435 (494)
.++||||+.+ +...+...+..+|++|+|+|+++.... .+.....+.......+. .+...|+|+|+||+
T Consensus 114 ~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~-~~~~~~~qt~e~~~~~~----~~~~~~iIvviNK~ 181 (483)
T 3p26_A 114 TIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFE-SGFDLDGQTKEHMLLAS----SLGIHNLIIAMNKM 181 (483)
T ss_dssp EEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHH----HTTCCCEEEEEECG
T ss_pred EEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCccc-cccchhhhHHHHHHHHH----HcCCCcEEEEEECc
Confidence 9999999965 556677888999999999999873110 00011223333322222 22346799999999
Q ss_pred CcCCh-----HHHHHHHHHHc-------CCCCEEEEEcccCCCHHH
Q 011082 436 DEDGA-----EEVYEELERRV-------QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 436 Dl~~~-----~e~~~~L~~~~-------~~~~ii~ISA~~g~gI~~ 469 (494)
|+.+. ++..+.+...+ ...++++|||++|+|+++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99862 12233333322 145789999999999974
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.57 E-value=1.1e-14 Score=158.64 Aligned_cols=158 Identities=17% Similarity=0.191 Sum_probs=106.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCc---------cc------ccceeecceeeEEeec---C--cceEEecCCCcc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAV---------GH------YSFTTLRPNLGNMNFD---D--IQITVADIPGLI 364 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i---------~~------~~ftTl~p~~g~v~~~---~--~~~~l~DtPGli 364 (494)
.+.+|+|+|.+|+|||||+++|+.....+ .+ ....|+......+.+. + ..+.++||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34589999999999999999997531111 11 1223444444444443 2 578899999997
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HH
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EE 442 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e 442 (494)
+ +.....+.+..+|.+|+|+|+++. ........+...+ . .+.|.|+|+||+|+... ++
T Consensus 85 d-------F~~ev~r~l~~aD~aILVVDa~~g-------v~~qt~~~~~~a~-~-----~~ipiIvviNKiDl~~a~~~~ 144 (600)
T 2ywe_A 85 D-------FSYEVSRALAACEGALLLIDASQG-------IEAQTVANFWKAV-E-----QDLVIIPVINKIDLPSADVDR 144 (600)
T ss_dssp G-------GHHHHHHHHHTCSEEEEEEETTTB-------CCHHHHHHHHHHH-H-----TTCEEEEEEECTTSTTCCHHH
T ss_pred h-------HHHHHHHHHHhCCEEEEEEECCCC-------ccHHHHHHHHHHH-H-----CCCCEEEEEeccCccccCHHH
Confidence 6 455567788999999999999874 2233333332222 1 36899999999999764 34
Q ss_pred HHHHHHHHcC--CCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 443 VYEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 443 ~~~~L~~~~~--~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
..+++.+.+. ..+++++||+++.|+++|++.|.+.+....
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 5566666552 125899999999999999999999887643
No 161
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.57 E-value=1.6e-14 Score=157.59 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=103.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc---------cc------ccceeecceeeEEeec---C--cceEEecCCCccC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV---------GH------YSFTTLRPNLGNMNFD---D--IQITVADIPGLIK 365 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i---------~~------~~ftTl~p~~g~v~~~---~--~~~~l~DtPGli~ 365 (494)
+.+|+|+|.+++|||||+++|+.....+ .+ ....|+......+.+. + ..+.++||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4589999999999999999997632111 11 1233444444455553 2 6789999999865
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEV 443 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~ 443 (494)
+.....+.+..+|++|+|+|+++.. .......+...+ . .+.|.|+|+||+|+... ++.
T Consensus 84 -------F~~ev~~~l~~aD~aILVVDa~~gv-------~~qt~~~~~~~~-~-----~~ipiIvViNKiDl~~a~~~~v 143 (599)
T 3cb4_D 84 -------FSYEVSRSLAACEGALLVVDAGQGV-------EAQTLANCYTAM-E-----MDLEVVPVLNKIDLPAADPERV 143 (599)
T ss_dssp -------GHHHHHHHHHHCSEEEEEEETTTCC-------CTHHHHHHHHHH-H-----TTCEEEEEEECTTSTTCCHHHH
T ss_pred -------HHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHH-H-----CCCCEEEeeeccCcccccHHHH
Confidence 5555677889999999999998732 223333332222 1 26799999999999764 445
Q ss_pred HHHHHHHcC--CCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 444 YEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 444 ~~~L~~~~~--~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
.+.+.+.+. ..+++++||+++.|+++|++.|.+.+....
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 566766652 235899999999999999999999887543
No 162
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.56 E-value=5.7e-16 Score=153.89 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=98.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCC------cccccc----------------------eeeccee-----------
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPA------VGHYSF----------------------TTLRPNL----------- 345 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~------i~~~~f----------------------tTl~p~~----------- 345 (494)
..++|+|+|.+|||||||+|+|++.... +...|. +|.+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999987542 222332 3332100
Q ss_pred e------------EEeec-CcceEEecCCCccCCcc----cc--ccchhhHHHHHHhhceee-EEEecCCCCCCCCCCCC
Q 011082 346 G------------NMNFD-DIQITVADIPGLIKGAH----EN--RGLGHAFLRHIERTKVLA-YVVDLASGLDGRKGIKP 405 (494)
Q Consensus 346 g------------~v~~~-~~~~~l~DtPGli~~a~----~~--~~L~~~fl~~i~~ad~ll-~VvD~s~~~~~~~~~~~ 405 (494)
| .+..+ ...+.++||||+..... +. ..+......++..++.++ +|+|++....
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~------- 177 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA------- 177 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------
Confidence 0 01111 36899999999976321 11 012233445666776554 7999876311
Q ss_pred HHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HHHHHHHHc-C----CCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 406 WKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRV-Q----GVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 406 ~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~~~L~~~~-~----~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
......+...+. -...|.|+|+||+|+..... ..+.+...+ . ..+++++||+++.|+++|++.|.+.
T Consensus 178 ~~~~~~~~~~~~-----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 178 NSDALKIAKEVD-----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GCHHHHHHHHHC-----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred hhHHHHHHHHhC-----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 111122333332 13689999999999976432 223333321 1 1367889999999999999998763
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.56 E-value=1.1e-14 Score=151.58 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=101.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC--------c--------ccccceeecceeeEEeecCcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA--------V--------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~--------i--------~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~ 370 (494)
.+|+++|.+|+|||||+++|++.... . ......|++.....+...+..+.++||||+.+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 37999999999999999999874100 0 00223454443333444558899999999864
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHH----HHH
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEE----VYE 445 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e----~~~ 445 (494)
+.......+..+|++|+|+|+++. ...+....+..+.. .+.| .|+|+||+|+.+..+ ..+
T Consensus 79 --f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~~~ 143 (397)
T 1d2e_A 79 --YVKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQ-----IGVEHVVVYVNKADAVQDSEMVELVEL 143 (397)
T ss_dssp --HHHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHH-----TTCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred --HHHHHHhhHhhCCEEEEEEECCCC--------CCHHHHHHHHHHHH-----cCCCeEEEEEECcccCCCHHHHHHHHH
Confidence 333444556679999999999873 12233333333322 2577 578999999985322 122
Q ss_pred HHHHHc---C----CCCEEEEEcccCCC----------HHHHHHHHHHHhccc
Q 011082 446 ELERRV---Q----GVPIYPVCAVLEEG----------VPELKVGLRMLVNGE 481 (494)
Q Consensus 446 ~L~~~~---~----~~~ii~ISA~~g~g----------I~~L~~~I~~~l~~~ 481 (494)
++.+.+ . ..+++++||+++.| +++|++.|.+.+...
T Consensus 144 ~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 232222 1 36899999999764 899999999887653
No 164
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=147.76 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=91.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC------CCCc--------------------------ccccceeecceeeEE-----
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA------KPAV--------------------------GHYSFTTLRPNLGNM----- 348 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~------~~~i--------------------------~~~~ftTl~p~~g~v----- 348 (494)
...|+|+|+||||||||+|+|++. +..+ .+..|.|..|+.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 458999999999999999999862 1111 112233222221111
Q ss_pred ---------eecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 011082 349 ---------NFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHH 419 (494)
Q Consensus 349 ---------~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~ 419 (494)
...+..++++||||+... .....+.+|++++|+|++.. .. .+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~-------~~---~~~i~~----- 208 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGG-------DE---LQGIKR----- 208 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC-------------------------
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcc-------hh---HHHhHH-----
Confidence 134578899999997531 12335689999999998752 11 111111
Q ss_pred hcccCCCCEEEEEeCCCcCChHH---HHHHHHHHc---------CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 420 QEGLSDRPSLVVANKIDEDGAEE---VYEELERRV---------QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 420 ~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~---------~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.+...|.++|+||+|+..... ....+...+ ...+++++||++++|+++|+++|.+.+..
T Consensus 209 --~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 209 --GIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp ----CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 123578999999999975432 222332211 13578999999999999999999887643
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=1.3e-14 Score=136.12 Aligned_cols=165 Identities=17% Similarity=0.181 Sum_probs=97.4
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcCCC--CcccccceeecceeeEEeecCcceEEecCCCccCCccccc---cc---
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR---GL--- 373 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~~~--~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~---~L--- 373 (494)
.+..+..|+|+|++|||||||+|+|++... .+...+++|.. .+.+.+++ .+.++||||+........ .+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 445566899999999999999999998752 22344444432 23444444 788999999864211000 00
Q ss_pred hhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH---HHHHHHH
Q 011082 374 GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YEELERR 450 (494)
Q Consensus 374 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~---~~~L~~~ 450 (494)
...++.....++.+++|+|++.. ..... ..+...+.. ...|.++|.||+|+.+..+. ...+...
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~-------~~~~~-~~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHP-------LKDLD-QQMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSC-------CCHHH-HHHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCC-------CchhH-HHHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 11122222467899999999863 12211 122222221 36899999999999875321 2333333
Q ss_pred c--C--CCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 451 V--Q--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 451 ~--~--~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+ + ...++++||+++.|++++++.|.+++.+..
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 2 1 246789999999999999999999887643
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.3e-15 Score=161.01 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=103.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCccc-------------------------------ccceeecceeeEEeecC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGH-------------------------------YSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~-------------------------------~~ftTl~p~~g~v~~~~ 352 (494)
+...+|+++|.+|+|||||+++|++....+.. .+++|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34568999999999999999999976433322 14668888888888888
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
..+.++||||+.+ +...+...+..+|++|+|+|++..... .+.....+.......+. .+...|+|+|+
T Consensus 245 ~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e-~~~~~~~qt~e~l~~~~----~lgi~~iIVVv 312 (611)
T 3izq_1 245 ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFE-SGFDLDGQTKEHMLLAS----SLGIHNLIIAM 312 (611)
T ss_dssp CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHH-TTCCTTSHHHHHHHHHH----TTTCCEEEEEE
T ss_pred ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCccc-ccchhhhHHHHHHHHHH----HcCCCeEEEEE
Confidence 9999999999865 445556667889999999999752000 00001112222222222 22235589999
Q ss_pred eCCCcCCh-----HHHHHHHHHHc-------CCCCEEEEEcccCCCHHHH
Q 011082 433 NKIDEDGA-----EEVYEELERRV-------QGVPIYPVCAVLEEGVPEL 470 (494)
Q Consensus 433 NKiDl~~~-----~e~~~~L~~~~-------~~~~ii~ISA~~g~gI~~L 470 (494)
||+|+... ++..+.+...+ ...++|+|||++|.|++++
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999862 12233333322 1468999999999999865
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.53 E-value=2.8e-14 Score=150.34 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=94.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCc-----------ccccc----------------------eeecceeeEEeecCc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAV-----------GHYSF----------------------TTLRPNLGNMNFDDI 353 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i-----------~~~~f----------------------tTl~p~~g~v~~~~~ 353 (494)
.+|+++|.+|+|||||+++|++....+ +.++. .|++.....+..++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 479999999999999999998653111 11112 233333344455667
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEe
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN 433 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlN 433 (494)
.+.++||||+.+ +...+...+..+|++|+|+|+++. ...+...++..+.. +..+|.|+|+|
T Consensus 105 ~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g--------~~~qt~~~l~~~~~----~~~~~iIvviN 165 (434)
T 1zun_B 105 KFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASL----LGIKHIVVAIN 165 (434)
T ss_dssp EEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHH----TTCCEEEEEEE
T ss_pred eEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHH----cCCCeEEEEEE
Confidence 899999999764 445566778899999999999873 12233333332222 22246899999
Q ss_pred CCCcCCh-HH----HHHHHHHHc--CC-----CCEEEEEcccCCCHHH
Q 011082 434 KIDEDGA-EE----VYEELERRV--QG-----VPIYPVCAVLEEGVPE 469 (494)
Q Consensus 434 KiDl~~~-~e----~~~~L~~~~--~~-----~~ii~ISA~~g~gI~~ 469 (494)
|+|+.+. .+ ..+++.+.+ .+ .+++++||++|.|+++
T Consensus 166 K~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 9999862 11 233333332 12 5789999999999987
No 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.51 E-value=2.8e-15 Score=163.76 Aligned_cols=162 Identities=20% Similarity=0.194 Sum_probs=84.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCC-------------------------------cccccceeecceeeEEeecCc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPA-------------------------------VGHYSFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~-------------------------------i~~~~ftTl~p~~g~v~~~~~ 353 (494)
...+|+++|.+|+|||||+++|+..... ....+++|.+.....+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 3457999999999999999999642100 011345677777777777788
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEE
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVA 432 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVl 432 (494)
.+.|+||||+.+ +...+...+..+|++|+|+|++..... .+.....+....+..+.. ...| +|+|+
T Consensus 256 ~i~iiDTPGh~~-------f~~~~~~~~~~aD~alLVVDa~~g~~e-~gi~~~~qt~e~l~~~~~-----lgip~iIvvi 322 (592)
T 3mca_A 256 IYEIGDAPGHRD-------FISGMIAGASSADFAVLVVDSSQNNFE-RGFLENGQTREHAYLLRA-----LGISEIVVSV 322 (592)
T ss_dssp ---CCEEESSSE-------EEEECCC-------CCSEEEEEECCSS-TTSCSCSSHHHHHHHHHH-----SSCCCEEEEE
T ss_pred EEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCCccc-cccccchHHHHHHHHHHH-----cCCCeEEEEE
Confidence 999999999875 333345667889999999999863100 000001112222222221 2455 88899
Q ss_pred eCCCcCC--hH---HHHHHHHHHc-C-------CCCEEEEEcccCCCHH--------------HHHHHHHHHhc
Q 011082 433 NKIDEDG--AE---EVYEELERRV-Q-------GVPIYPVCAVLEEGVP--------------ELKVGLRMLVN 479 (494)
Q Consensus 433 NKiDl~~--~~---e~~~~L~~~~-~-------~~~ii~ISA~~g~gI~--------------~L~~~I~~~l~ 479 (494)
||+|+.. .. .+.+.+...+ . ..++|+|||++|.||+ .|++.|..++.
T Consensus 323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 9999976 22 2334444443 1 2369999999999998 78888877665
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=5.7e-14 Score=132.64 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=81.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHh--
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER-- 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~-- 383 (494)
..+|+|+|++|+|||||+++|++...... .++..++.+. .+....+.++||||+... ...+..++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~~ 80 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYDGSGVTLVDFPGHVKL-------RYKLSDYLKTRA 80 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-TGGGSSCEEEECCCCGGG-------THHHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-EeeCceEEEEECCCcHHH-------HHHHHHHHHhcc
Confidence 45899999999999999999998753211 1112222221 124578999999998652 2223334444
Q ss_pred --hceeeEEEecC-CCCCCCCCCCCHHHHHHHHHHHHhhhc--ccCCCCEEEEEeCCCcCChH---HHH-------HHHH
Q 011082 384 --TKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGAE---EVY-------EELE 448 (494)
Q Consensus 384 --ad~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IlVlNKiDl~~~~---e~~-------~~L~ 448 (494)
+|++++|+|++ + ..++.....++.++..... .-...|+++|+||+|+.... +.. ..+.
T Consensus 81 ~~~~~~i~v~D~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 153 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVD-------PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVI 153 (218)
T ss_dssp GGEEEEEEEEETTSC-------TTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCC-------hHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHH
Confidence 89999999998 4 2344444445444433211 12478999999999997642 111 1222
Q ss_pred HHcCCCCEEEEEcccCCC
Q 011082 449 RRVQGVPIYPVCAVLEEG 466 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~g 466 (494)
.. .+..++++||+++.+
T Consensus 154 ~~-~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 154 ER-RKKSLNEVERKINEE 170 (218)
T ss_dssp HH-HHHHHHC--------
T ss_pred HH-Hhccccccccccccc
Confidence 11 134678889887764
No 170
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.49 E-value=3.3e-14 Score=158.12 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=103.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc-ccccce--------------eeccee-------------------------
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV-GHYSFT--------------TLRPNL------------------------- 345 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i-~~~~ft--------------Tl~p~~------------------------- 345 (494)
..+|+|+|.+|||||||+|+|++..... +..|.| |.....
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 4579999999999999999999986533 334444 221100
Q ss_pred --------------eEEeecC----cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHH
Q 011082 346 --------------GNMNFDD----IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWK 407 (494)
Q Consensus 346 --------------g~v~~~~----~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~ 407 (494)
-.+.++. ..+.++||||+..... .......++..+|++|+|+|++.. ....
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~-------~s~~ 217 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQP-------CTLG 217 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTST-------TCHH
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCc-------cchh
Confidence 0011111 3689999999875221 233456778999999999999863 2334
Q ss_pred HHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--------H-------HHHHHHHHc----C-------CCCEEEEEc
Q 011082 408 QLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--------E-------VYEELERRV----Q-------GVPIYPVCA 461 (494)
Q Consensus 408 ~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--------e-------~~~~L~~~~----~-------~~~ii~ISA 461 (494)
....+...+.. ...|+++|+||+|+.... + +...+...+ . ..++++|||
T Consensus 218 e~~~l~~~l~~-----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSA 292 (695)
T 2j69_A 218 ERRYLENYIKG-----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSS 292 (695)
T ss_dssp HHHHHHHHTTT-----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCH
T ss_pred HHHHHHHHHHh-----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeC
Confidence 43333222211 267899999999986432 1 111111111 1 237999999
Q ss_pred c--------------cCCCHHHHHHHHHHHhcc
Q 011082 462 V--------------LEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~--------------~g~gI~~L~~~I~~~l~~ 480 (494)
+ ++.|+++|.+.|.+.+..
T Consensus 293 k~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 293 IQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 9 999999999999887754
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.49 E-value=1.2e-15 Score=163.12 Aligned_cols=152 Identities=24% Similarity=0.246 Sum_probs=104.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
.+.|+++|.+|+|||||+++|++........+..|.+.....+.+++..+.++||||+..... .+.+.+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-------~~~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-------MRARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-------SBCSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-------HHHHHHhhCC
Confidence 468999999999999999999875444444455666555556666778899999999865322 2234456789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHH------Hc-CCCCE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELER------RV-QGVPI 456 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~------~~-~~~~i 456 (494)
++++|+|+++... ....+.+ ..+.. .+.|.|+|+||+|+...+ .....+.+ .+ ...++
T Consensus 77 ~aILVVda~~g~~----~qT~e~l----~~~~~-----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 77 IVVLVVAADDGVM----PQTIEAI----QHAKA-----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF 143 (501)
T ss_dssp SEEEEEETTTBSC----TTTHHHH----HHHHH-----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE
T ss_pred EEEEEeecccCcc----HHHHHHH----HHHHh-----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE
Confidence 9999999887422 1222222 22221 368999999999997532 11111111 01 12579
Q ss_pred EEEEcccCCCHHHHHHHHHHH
Q 011082 457 YPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~ 477 (494)
+++||++|.|+++|++.|...
T Consensus 144 v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTTT
T ss_pred EEEeeeeccCcchhhhhhhhh
Confidence 999999999999999998753
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=2.9e-13 Score=150.46 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=84.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc---CCC---------Cccc------ccceeecceeeEEeecCcceEEecCCCccCCc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR---AKP---------AVGH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 367 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~---~~~---------~i~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a 367 (494)
..+|+|+|.+|||||||+++|+. ... .+.+ .+.+|+......+.+++..+.++||||+.+
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD-- 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc--
Confidence 34899999999999999999984 211 1122 245667777777888889999999999975
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHH
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 445 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~ 445 (494)
+.......+..+|++|+|+|+++. ..... ..++..+.. .+.|.|+|+||+|+... ....+
T Consensus 88 -----f~~~~~~~l~~aD~~llVvDa~~g-------~~~~~-~~~~~~~~~-----~~~p~ilviNK~Dl~~~~~~~~~~ 149 (693)
T 2xex_A 88 -----FTVEVERSLRVLDGAVTVLDAQSG-------VEPQT-ETVWRQATT-----YGVPRIVFVNKMDKLGANFEYSVS 149 (693)
T ss_dssp -----CCHHHHHHHHHCSEEEEEEETTTB-------SCHHH-HHHHHHHHH-----TTCCEEEEEECTTSTTCCHHHHHH
T ss_pred -----hHHHHHHHHHHCCEEEEEECCCCC-------CcHHH-HHHHHHHHH-----cCCCEEEEEECCCccccchHHHHH
Confidence 445667888999999999999873 22222 333344433 26899999999999754 23344
Q ss_pred HHHH
Q 011082 446 ELER 449 (494)
Q Consensus 446 ~L~~ 449 (494)
.+++
T Consensus 150 ~l~~ 153 (693)
T 2xex_A 150 TLHD 153 (693)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.48 E-value=2.9e-13 Score=150.47 Aligned_cols=124 Identities=21% Similarity=0.240 Sum_probs=82.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC---CC---------Cccc------ccceeecceeeEEeecCcceEEecCCCccCCc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA---KP---------AVGH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 367 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~---~~---------~i~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a 367 (494)
..+|+|+|.+|||||||+++|+.. .. .+.+ ....|+......+.+.+..+.++||||+.+
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD-- 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT--
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc--
Confidence 458999999999999999999831 10 0111 234566666677778888999999999965
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHH
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 445 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~ 445 (494)
+.......+..+|++|+|+|+++. ..... ..++..+.. .+.|.++|+||+|+... ....+
T Consensus 90 -----f~~~~~~~l~~aD~~ilVvDa~~g-------~~~~t-~~~~~~~~~-----~~~p~ivviNKiD~~~~~~~~~~~ 151 (691)
T 1dar_A 90 -----FTIEVERSMRVLDGAIVVFDSSQG-------VEPQS-ETVWRQAEK-----YKVPRIAFANKMDKTGADLWLVIR 151 (691)
T ss_dssp -----CHHHHHHHHHHCSEEEEEEETTTC-------SCHHH-HHHHHHHHH-----TTCCEEEEEECTTSTTCCHHHHHH
T ss_pred -----hHHHHHHHHHHCCEEEEEEECCCC-------cchhh-HHHHHHHHH-----cCCCEEEEEECCCcccCCHHHHHH
Confidence 555667888999999999999873 22333 233333333 27899999999999753 23344
Q ss_pred HHHH
Q 011082 446 ELER 449 (494)
Q Consensus 446 ~L~~ 449 (494)
.+.+
T Consensus 152 ~l~~ 155 (691)
T 1dar_A 152 TMQE 155 (691)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=2.2e-13 Score=133.63 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=87.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHH----
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE---- 382 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~---- 382 (494)
+|+|+|.+|||||||+|+|++... .+.+++++|..+....+.+++..+.++||||+.+.... ...+.+.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~----~~~~~~~i~~~l~ 113 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYV----NHQALELIKGFLV 113 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEE----CHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccc----hHHHHHHHHHHHh
Confidence 799999999999999999999865 56788899999988888899999999999999774432 233444444
Q ss_pred --hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC
Q 011082 383 --RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 383 --~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~ 438 (494)
.+|++++|+|+... ........++..+......-..+|+++|+||+|+.
T Consensus 114 ~~~~~~il~V~~~d~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 114 NRTIDVLLYVDRLDVY-------AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TCEECEEEEEEESSCS-------CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cCCCCEEEEEEcCCCC-------CCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 67999999888652 11122234444554432211235999999999985
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=1e-13 Score=142.34 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=71.3
Q ss_pred cCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEE
Q 011082 351 DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 430 (494)
Q Consensus 351 ~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Il 430 (494)
.+..++++||||+.. .....+..+|++|+|+|..... .. +. +...+...|.++
T Consensus 170 ~~~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~-------~~---~~-------l~~~~~~~p~iv 222 (355)
T 3p32_A 170 AGFDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGD-------QL---QG-------IKKGVLELADIV 222 (355)
T ss_dssp TTCCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTC-------TT---TT-------CCTTSGGGCSEE
T ss_pred CCCCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCc-------cH---HH-------HHHhHhhcCCEE
Confidence 457899999999754 1223457899999999976521 11 00 011233569999
Q ss_pred EEeCCCcCChHH---HHHHHHHHc---C------CCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 431 VANKIDEDGAEE---VYEELERRV---Q------GVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 431 VlNKiDl~~~~e---~~~~L~~~~---~------~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
|+||+|+..... ..+.+.+.+ . ..++++|||++++|+++|++.|.+.+..
T Consensus 223 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 223 VVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999999975432 223343332 1 4689999999999999999999988765
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.46 E-value=3.9e-13 Score=148.80 Aligned_cols=127 Identities=23% Similarity=0.258 Sum_probs=87.0
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcCCCC------------ccc------ccceeecceeeEEeecCcceEEecCCCcc
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRAKPA------------VGH------YSFTTLRPNLGNMNFDDIQITVADIPGLI 364 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~------------i~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGli 364 (494)
+..+.+|+|+|.+|||||||+++|++.... +.+ ....|..+....+...+..+.++||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 455678999999999999999999843211 111 11335555555666677889999999986
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC-ChHHH
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAEEV 443 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~-~~~e~ 443 (494)
+ +.......+..+|.+++|+|+++.. ..+...++..+.. .+.|.|+|+||+|+. ..++.
T Consensus 86 ~-------f~~~~~~~l~~ad~~ilVvD~~~g~--------~~qt~~~~~~~~~-----~~ip~ilv~NKiD~~~~~~~~ 145 (665)
T 2dy1_A 86 D-------FVGEIRGALEAADAALVAVSAEAGV--------QVGTERAWTVAER-----LGLPRMVVVTKLDKGGDYYAL 145 (665)
T ss_dssp G-------GHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHHH-----TTCCEEEEEECGGGCCCHHHH
T ss_pred c-------hHHHHHHHHhhcCcEEEEEcCCccc--------chhHHHHHHHHHH-----ccCCEEEEecCCchhhhHHHH
Confidence 5 4455677888999999999987631 2333444444433 268999999999986 22344
Q ss_pred HHHHHH
Q 011082 444 YEELER 449 (494)
Q Consensus 444 ~~~L~~ 449 (494)
.+.+.+
T Consensus 146 ~~~l~~ 151 (665)
T 2dy1_A 146 LEDLRS 151 (665)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.46 E-value=8.9e-14 Score=151.76 Aligned_cols=153 Identities=24% Similarity=0.246 Sum_probs=95.2
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeE--Ee------------------ecCcceEEecCCCccC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGN--MN------------------FDDIQITVADIPGLIK 365 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~--v~------------------~~~~~~~l~DtPGli~ 365 (494)
.+.|+|+|.+|+|||||+++|++... .++......++.+. +. +....+.++||||+..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 45899999999999999999987522 11111001111111 11 1112589999999876
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-----
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----- 440 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----- 440 (494)
.... ..+.+..+|++|+|+|+++... .... ..+..+.. .+.|+|+|+||+|+...
T Consensus 83 F~~~-------~~r~~~~aD~aILVvDa~~Gv~-------~qT~-e~l~~l~~-----~~vPiIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 83 FTTL-------RKRGGALADLAILIVDINEGFK-------PQTQ-EALNILRM-----YRTPFVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp CTTS-------BCSSSBSCSEEEEEEETTTCCC-------HHHH-HHHHHHHH-----TTCCEEEEEECGGGSTTCCCCT
T ss_pred HHHH-------HHHHHhhCCEEEEEEECCCCcc-------HhHH-HHHHHHHH-----cCCeEEEEeccccccccccccc
Confidence 4322 1233566899999999987321 1222 22333332 36899999999999631
Q ss_pred ------------HH-----------HHHHHHHHc-------------CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 441 ------------EE-----------VYEELERRV-------------QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 441 ------------~e-----------~~~~L~~~~-------------~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.. ..+.|.+.. ...+++++||++|.|+++|+++|..++..
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 11 111222211 12379999999999999999999987753
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.46 E-value=7.3e-14 Score=147.22 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=91.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcc-------------------------c------ccceeecceeeEEeecCcce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVG-------------------------H------YSFTTLRPNLGNMNFDDIQI 355 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~-------------------------~------~~ftTl~p~~g~v~~~~~~~ 355 (494)
.+|+++|.+|+|||||+++|+.....+. + ...+|++.....+...+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 4799999999999999999975311110 0 23456666666677777899
Q ss_pred EEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHH-------HHHHHHHHHHhhhcccCCCCE
Q 011082 356 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWK-------QLRDLIIELEHHQEGLSDRPS 428 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~-------~~~~l~~eL~~~~~~l~~~P~ 428 (494)
.++||||+.+ +...+...+..+|++|+|+|+++ ..++ +....+..+. .+...|+
T Consensus 87 ~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~--------gsfe~~~~~~~qt~~~~~~~~----~~~~~~i 147 (435)
T 1jny_A 87 TIIDAPGHRD-------FVKNMITGASQADAAILVVSAKK--------GEYEAGMSVEGQTREHIILAK----TMGLDQL 147 (435)
T ss_dssp EECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECST--------THHHHHHSTTCHHHHHHHHHH----HTTCTTC
T ss_pred EEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCC--------CccccccccchHHHHHHHHHH----HcCCCeE
Confidence 9999999876 44445666778999999999986 2222 2222222221 1223468
Q ss_pred EEEEeCCCcCCh-------HHHHHHHHHHc---C----CCCEEEEEcccCCCHHHH
Q 011082 429 LVVANKIDEDGA-------EEVYEELERRV---Q----GVPIYPVCAVLEEGVPEL 470 (494)
Q Consensus 429 IlVlNKiDl~~~-------~e~~~~L~~~~---~----~~~ii~ISA~~g~gI~~L 470 (494)
|+|+||+|+.+. +...+++.+.+ . ..+++++||++|+|+.++
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 899999999862 12233344332 1 267999999999999743
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.46 E-value=4.4e-13 Score=144.52 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=78.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc----------------cc------ccceeecceeeEEeecCcceEEecCCCc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV----------------GH------YSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------------~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
..+|+|+|.+|||||||+++|+.....+ .+ ....|.......+.+.+..+.++||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 3589999999999999999998642111 11 2223444445566777889999999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
.+ +.......+..+|++|+|+|+++.. ..+...++..+. ..+.|.|+|+||+|+...
T Consensus 93 ~d-------f~~~~~~~l~~aD~~IlVvDa~~g~--------~~~t~~~~~~~~-----~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 ED-------FSEDTYRTLTAVDCCLMVIDAAKGV--------EDRTRKLMEVTR-----LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TT-------CCHHHHHGGGGCSEEEEEEETTTCS--------CHHHHHHHHHHT-----TTTCCEEEEEECTTSCCS
T ss_pred hh-------HHHHHHHHHHHCCEEEEEEeCCccc--------hHHHHHHHHHHH-----HcCCCEEEEEcCcCCccc
Confidence 65 3445566778899999999998731 233333433332 136899999999999753
No 180
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.45 E-value=6e-14 Score=148.83 Aligned_cols=150 Identities=21% Similarity=0.192 Sum_probs=94.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCc-------------------------cc------ccceeecceeeEEeecCcce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------GH------YSFTTLRPNLGNMNFDDIQI 355 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i-------------------------~~------~~ftTl~p~~g~v~~~~~~~ 355 (494)
.+|+++|.+|+|||||+++|++....+ .+ ....|++.....+..++..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 379999999999999999998641000 01 13456666666667777889
Q ss_pred EEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeC
Q 011082 356 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANK 434 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNK 434 (494)
.++||||+.+ +...+...+..+|++|+|+|+++.... .+.....+....+..+.. ...| .|+|+||
T Consensus 88 ~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~-~sf~~~~qt~~~~~~~~~-----~~v~~iivviNK 154 (458)
T 1f60_A 88 TVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFE-AGISKDGQTREHALLAFT-----LGVRQLIVAVNK 154 (458)
T ss_dssp EEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHH-HHTCTTSHHHHHHHHHHH-----TTCCEEEEEEEC
T ss_pred EEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccc-cccCcchhHHHHHHHHHH-----cCCCeEEEEEEc
Confidence 9999999754 444455667789999999998752000 000000022222222211 2455 8889999
Q ss_pred CCcCC--hH---HHHHHHHHH---cC----CCCEEEEEcccCCCHHH
Q 011082 435 IDEDG--AE---EVYEELERR---VQ----GVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 435 iDl~~--~~---e~~~~L~~~---~~----~~~ii~ISA~~g~gI~~ 469 (494)
+|+.+ .+ +..+++.+. +. ..+++++||++|.|+++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99984 22 222333322 21 36899999999999874
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.45 E-value=1e-12 Score=129.37 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=85.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHH---
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE--- 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~--- 382 (494)
.+|+++|.+|+|||||+|+|++... .+.+++.+|..+....+...+..+.++||||+.+.... ...++..+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~----~~~~~~~i~~~~ 115 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI----NDMALNIIKSFL 115 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE----CHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc----hHHHHHHHHHHh
Confidence 3799999999999999999998764 45777888888777777777889999999999764322 222333333
Q ss_pred ---hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 383 ---RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 383 ---~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
.+|++|+|+|+... ........++..+......-...|+|+|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~-------~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-------RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-------CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-------cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 58999999988641 1112223444444432111012699999999999753
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.44 E-value=2.2e-13 Score=155.93 Aligned_cols=155 Identities=22% Similarity=0.194 Sum_probs=99.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-----C-----------cccccceeecceeeEEeecCcceEEecCCCccCCccc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-----A-----------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 369 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-----~-----------i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~ 369 (494)
..+|+++|.+|+|||||+++|++... . .......|.+.....+...+..+.++||||+.+
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed---- 371 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD---- 371 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH----
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH----
Confidence 35799999999999999999987410 0 001123344433333444558899999999865
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHHH----H
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEV----Y 444 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e~----~ 444 (494)
+.......+..+|++|+|+|+++... .+...++..+.. .+.| +|+|+||+|+.+..+. .
T Consensus 372 ---F~~~mi~gas~AD~aILVVDAtdGv~--------~QTrEhL~ll~~-----lgIP~IIVVINKiDLv~d~e~le~i~ 435 (1289)
T 3avx_A 372 ---YVKNMITGAAQMDGAILVVAATDGPM--------PQTREHILLGRQ-----VGVPYIIVFLNKCDMVDDEELLELVE 435 (1289)
T ss_dssp ---HHHHHHHTSCCCSEEEEEEETTTCSC--------TTHHHHHHHHHH-----HTCSCEEEEEECCTTCCCHHHHHHHH
T ss_pred ---HHHHHHHHHhhCCEEEEEEcCCccCc--------HHHHHHHHHHHH-----cCCCeEEEEEeecccccchhhHHHHH
Confidence 33344455667899999999987421 122223333322 2567 6889999999863322 2
Q ss_pred HHHHHHc-------CCCCEEEEEcccC--------CCHHHHHHHHHHHhcc
Q 011082 445 EELERRV-------QGVPIYPVCAVLE--------EGVPELKVGLRMLVNG 480 (494)
Q Consensus 445 ~~L~~~~-------~~~~ii~ISA~~g--------~gI~~L~~~I~~~l~~ 480 (494)
+++.+.+ ...+++++||+++ .|+++|++.|...+..
T Consensus 436 eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 2333222 1368999999999 5799999999987764
No 183
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=1.2e-13 Score=140.92 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=92.1
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcC------CCCccc-ccceeec-----------------ceee-----------
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRA------KPAVGH-YSFTTLR-----------------PNLG----------- 346 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~------~~~i~~-~~ftTl~-----------------p~~g----------- 346 (494)
++..+..|+|+|+||||||||+++|++. +..+.. .+.++.. +...
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 130 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccccc
Confidence 4455668999999999999999999843 222111 1111100 0000
Q ss_pred -----------EEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 011082 347 -----------NMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIE 415 (494)
Q Consensus 347 -----------~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~e 415 (494)
.+...+.+++++||||+.+.. ....+.+|++++|+|.+.. + ..+.+..
T Consensus 131 G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~-------~---~~~~i~~- 189 (337)
T 2qm8_A 131 GVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAG-------D---ELQGIKK- 189 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC----------------CCT-
T ss_pred chHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCc-------c---cHHHHHH-
Confidence 012246789999999986521 1234678999999997641 1 1110100
Q ss_pred HHhhhcccCCCCEEEEEeCCCcCChHH----HHHHHHHHc---C------CCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 416 LEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRV---Q------GVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 416 L~~~~~~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~---~------~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+...|.++|+||+|+..... ..+.+.... . ..+++++||+++.|+++|++.|.+++.
T Consensus 190 ------~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 190 ------GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ------THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 011246788899999754221 123333221 2 357999999999999999999988765
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.42 E-value=2e-12 Score=143.99 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=79.6
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCC---CC---------ccc------ccceeecceeeEEeecC-------cceEEec
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAK---PA---------VGH------YSFTTLRPNLGNMNFDD-------IQITVAD 359 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~---~~---------i~~------~~ftTl~p~~g~v~~~~-------~~~~l~D 359 (494)
...+|+|+|..|+|||||+++|+... .. ..+ ....|+......+.+.+ ..+.++|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 34589999999999999999996421 11 111 12334444445566665 7899999
Q ss_pred CCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 360 IPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 360 tPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
|||+.+ +.......+..+|.+|+|+|+++.. ..+...++..+.. .+.|.++|+||+|+..
T Consensus 89 TPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv--------~~qt~~~~~~~~~-----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVD-------FTIEVERSMRVLDGAVMVYCAVGGV--------QPQSETVWRQANK-----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccc-------hHHHHHHHHHHCCEEEEEEeCCCCC--------cHHHHHHHHHHHH-----cCCCEEEEEeCCCccc
Confidence 999975 4445667788999999999998731 1222333333322 3689999999999875
Q ss_pred h
Q 011082 440 A 440 (494)
Q Consensus 440 ~ 440 (494)
.
T Consensus 149 ~ 149 (704)
T 2rdo_7 149 A 149 (704)
T ss_pred c
Confidence 4
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=3.3e-13 Score=138.87 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=73.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccc-------eeeccee--eEEeecC--cceEEecCCCccCCccc---cccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSF-------TTLRPNL--GNMNFDD--IQITVADIPGLIKGAHE---NRGL 373 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~f-------tTl~p~~--g~v~~~~--~~~~l~DtPGli~~a~~---~~~L 373 (494)
+|+|||.+|+|||||+++|.+.......+.. .|..... ..+..++ ..+.++||||+...... ...+
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i 118 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 118 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHH
Confidence 6899999999999999999877554333311 2222221 1222233 36899999999542211 1112
Q ss_pred h----hhHHHHHHhhc-------------eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCC
Q 011082 374 G----HAFLRHIERTK-------------VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKI 435 (494)
Q Consensus 374 ~----~~fl~~i~~ad-------------~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKi 435 (494)
. ..|..++..++ +++++++.+. .+..... .++..+ . ...|+|+|+||+
T Consensus 119 ~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--------~~l~~~d~~~~~~l---~---~~~piIlV~NK~ 184 (361)
T 2qag_A 119 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--------HGLKPLDVAFMKAI---H---NKVNIVPVIAKA 184 (361)
T ss_dssp HHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--------SSCCHHHHHHHHHT---C---S-SCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--------CCcchhHHHHHHHh---c---cCCCEEEEEECC
Confidence 2 22334444433 4666666432 1112222 233322 1 368999999999
Q ss_pred CcCChHHHH---HHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 436 DEDGAEEVY---EELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 436 Dl~~~~e~~---~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
|+....++. +.+.+.. .+.+++++||+++.+ ++.+..+...+.
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 998865443 2444443 356889999999988 555555544443
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.9e-13 Score=123.45 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=73.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
...+|+++|.+|||||||+++|++..... ...+..++.+. .+.+..+.+|||||+...... +...+...+..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~ 119 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-DYDGSGVTLVDFPGHVKLRYK---LSDYLKTRAKFV 119 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCC---HHHHHHHHGGGE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-eecCCeEEEEECCCCchHHHH---HHHHHHhhcccC
Confidence 34589999999999999999999874322 11112222221 225578999999998653221 111222223448
Q ss_pred ceeeEEEecC-CCCCCCCCCCCHHHHHHHHHHHHhhhc--ccCCCCEEEEEeCCCcCCh
Q 011082 385 KVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 385 d~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IlVlNKiDl~~~ 440 (494)
|++++|+|++ + ..++.....++.++..... .....|+++|+||+|+...
T Consensus 120 ~~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 120 KGLIFMVDSTVD-------PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEEETTCC-------HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CEEEEEEECCCC-------chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 9999999998 3 2334444444444432211 1237899999999999753
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=9.3e-14 Score=147.75 Aligned_cols=152 Identities=22% Similarity=0.207 Sum_probs=84.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCc-------------------------cc------ccceeecceeeEEeecCcce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------GH------YSFTTLRPNLGNMNFDDIQI 355 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i-------------------------~~------~~ftTl~p~~g~v~~~~~~~ 355 (494)
.+|+++|.+|+|||||+++|+.....+ .+ ....|++.....+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 479999999999999999997421110 11 12455555555667777899
Q ss_pred EEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeC
Q 011082 356 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANK 434 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNK 434 (494)
.++||||+.+ +...+...+..+|++|+|+|+++.... .+.....+....+..+.. ...| .|+|+||
T Consensus 124 ~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e-~sf~~~~qt~e~l~~~~~-----~~vp~iivviNK 190 (467)
T 1r5b_A 124 SLLDAPGHKG-------YVTNMINGASQADIGVLVISARRGEFE-AGFERGGQTREHAVLART-----QGINHLVVVINK 190 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTTHHH-HTTSTTCCHHHHHHHHHH-----TTCSSEEEEEEC
T ss_pred EEEECCCcHH-------HHHHHHhhcccCCEEEEEEeCCcCccc-cccCCCCcHHHHHHHHHH-----cCCCEEEEEEEC
Confidence 9999999865 334455667789999999999863100 000000111222222211 2566 8899999
Q ss_pred CCcCC----hH---HH----HHHHHHH--cC---CCCEEEEEcccCCCHHHHH
Q 011082 435 IDEDG----AE---EV----YEELERR--VQ---GVPIYPVCAVLEEGVPELK 471 (494)
Q Consensus 435 iDl~~----~~---e~----~~~L~~~--~~---~~~ii~ISA~~g~gI~~L~ 471 (494)
+|+.. .+ .. .+.+... +. ..+++++||++|.|+++++
T Consensus 191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99964 11 12 2222222 11 3569999999999998744
No 188
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.41 E-value=1.5e-13 Score=140.30 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=91.3
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC------CCC-cccccceeec-----------------cee------------e-
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA------KPA-VGHYSFTTLR-----------------PNL------------G- 346 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~------~~~-i~~~~ftTl~-----------------p~~------------g- 346 (494)
.....|+|+|+||||||||++.|++. +.. +...+++|.. +.. +
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 34558999999999999999999742 111 1111222210 000 0
Q ss_pred ---------EEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Q 011082 347 ---------NMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELE 417 (494)
Q Consensus 347 ---------~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~ 417 (494)
.+...+..+.++||||+.+.. ......+|++++|+|.+.... .+.+....
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----------~~~~~~aD~vl~Vvd~~~~~~----------~~~l~~~~- 192 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE----------TEVARMVDCFISLQIAGGGDD----------LQGIKKGL- 192 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH----------HHHHTTCSEEEEEECC----------------CCCCHHH-
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH----------HHHHHhCCEEEEEEeCCccHH----------HHHHHHhh-
Confidence 001345789999999986511 113578999999999875210 00000000
Q ss_pred hhhcccCCCCEEEEEeCCCcCChHHH---HHHHHH---HcC------CCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 418 HHQEGLSDRPSLVVANKIDEDGAEEV---YEELER---RVQ------GVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 418 ~~~~~l~~~P~IlVlNKiDl~~~~e~---~~~L~~---~~~------~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
...|.++|+||+|+...... .+.+++ .+. ..++++|||+++.|+++|++.|.+.+.
T Consensus 193 ------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 193 ------MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 13588999999999875332 223333 122 346899999999999999999988765
No 189
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.40 E-value=1.7e-13 Score=152.38 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=98.3
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecce----------------------------------------
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN---------------------------------------- 344 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~---------------------------------------- 344 (494)
..+.|++||.+|||||||+|+|++..........+|..|.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4679999999999999999999997542111112222111
Q ss_pred -----------eeEEeecC-cceEEecCCCccCCccc--c----ccchhhHHHHH-HhhceeeEEEecCCCCCCCCCCCC
Q 011082 345 -----------LGNMNFDD-IQITVADIPGLIKGAHE--N----RGLGHAFLRHI-ERTKVLAYVVDLASGLDGRKGIKP 405 (494)
Q Consensus 345 -----------~g~v~~~~-~~~~l~DtPGli~~a~~--~----~~L~~~fl~~i-~~ad~ll~VvD~s~~~~~~~~~~~ 405 (494)
.-.+..++ ..++++||||+...... . ..+......++ ..+|++|+|+|++.... .
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~------~ 203 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA------N 203 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS------S
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc------h
Confidence 11111222 46899999999873311 1 11222222333 46899999999987321 1
Q ss_pred HHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHH--Hc----CCCCEEEEEcccCCCHHHHHHHHHH
Q 011082 406 WKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELER--RV----QGVPIYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 406 ~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~--~~----~~~~ii~ISA~~g~gI~~L~~~I~~ 476 (494)
.....+..++.. ...|+|+|+||+|+.........+.. .+ ...+++++||+++.|+++|.+.|.+
T Consensus 204 -~d~l~ll~~L~~-----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 204 -SDALKIAKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp -CHHHHHHHHHCT-----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred -hHHHHHHHHHHh-----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 112233344321 36899999999999865322112211 11 1236789999999999999999986
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.39 E-value=6.5e-14 Score=143.54 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=92.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCC------cccccc----------------------eeecce-------------
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPA------VGHYSF----------------------TTLRPN------------- 344 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~------i~~~~f----------------------tTl~p~------------- 344 (494)
.+.|+|||.+|||||||+|+|++.+.. +...|. +|.+..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999987532 122222 222200
Q ss_pred --ee------EE--eec-CcceEEecCCCccCCccc--cc----cchhhHHHHHHhh-ceeeEEEecCCCCCCCCCCCCH
Q 011082 345 --LG------NM--NFD-DIQITVADIPGLIKGAHE--NR----GLGHAFLRHIERT-KVLAYVVDLASGLDGRKGIKPW 406 (494)
Q Consensus 345 --~g------~v--~~~-~~~~~l~DtPGli~~a~~--~~----~L~~~fl~~i~~a-d~ll~VvD~s~~~~~~~~~~~~ 406 (494)
.| .+ ..+ ...+.++||||+...... .. .+......++..+ +++|+|+|++.... .
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~------~- 183 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA------N- 183 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG------G-
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc------h-
Confidence 00 01 111 367999999999763221 11 1122223344334 56677777654211 1
Q ss_pred HHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HHHHHHHHc-C---C-CCEEEEEcccCCCHHHHHHHHHH
Q 011082 407 KQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRV-Q---G-VPIYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 407 ~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~~~L~~~~-~---~-~~ii~ISA~~g~gI~~L~~~I~~ 476 (494)
.....++.++ .+ ...|.|+|+||+|+.+... ..+.+.... + + .+++++||+++.|+++|++.+..
T Consensus 184 ~~~~~i~~~~---~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 184 SDALKVAKEV---DP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CHHHHHHHHH---CT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHh---Cc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 1112233333 11 3689999999999976432 122222211 1 1 25788999999999999998876
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.39 E-value=2.7e-13 Score=139.22 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=93.0
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeeccee-------------e-------------------------
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL-------------G------------------------- 346 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~-------------g------------------------- 346 (494)
..+.|+|||.+|||||||+|+|++...........|..|.. +
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999964321111111111110 0
Q ss_pred --------------EEee---cCcceEEecCCCccCCccc--c----ccchhhHHHHHHhhceeeEEEecCCCCCCCCCC
Q 011082 347 --------------NMNF---DDIQITVADIPGLIKGAHE--N----RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGI 403 (494)
Q Consensus 347 --------------~v~~---~~~~~~l~DtPGli~~a~~--~----~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~ 403 (494)
.+.+ ....+.++||||+...... . ..+......++..+|++++|+|.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~------ 186 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD------ 186 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC------
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC------
Confidence 1111 1246899999999874321 1 112333456788999999999876421
Q ss_pred CCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HHHHHHHHc--CCCCEEEEEcccCCCHHHHHHH
Q 011082 404 KPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRV--QGVPIYPVCAVLEEGVPELKVG 473 (494)
Q Consensus 404 ~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~ 473 (494)
........+..++ .+ ...|+|+|+||+|+..... ..+.+.... .+.++++||+.++.++++.+..
T Consensus 187 ~~~~~~~~l~~~~---~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 187 LATSDAIKISREV---DP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GGGCHHHHHHHHS---CT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred cCCHHHHHHHHHh---cc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 1111222222222 21 3679999999999976432 122222211 3467899999998887765443
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.38 E-value=2.6e-12 Score=139.03 Aligned_cols=124 Identities=20% Similarity=0.282 Sum_probs=89.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC----------------CCccc------ccceeecceeeEEeecCcceEEecCCCc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK----------------PAVGH------YSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~----------------~~i~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
..+|+|||..++|||||..+|.-.. ..+.| ....|+....-.+.+++..+.|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 3489999999999999999984210 01222 2345666777788899999999999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--H
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--E 441 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~ 441 (494)
.+ +.....+.+.-+|..|+|||+... ...+...++..+..+ +.|.|+++||+|.... .
T Consensus 111 vD-------F~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~ad~~ 170 (548)
T 3vqt_A 111 QD-------FSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMR-----ATPVMTFVNKMDREALHPL 170 (548)
T ss_dssp GG-------CSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCCCHH
T ss_pred HH-------HHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHh-----CCceEEEEecccchhcchh
Confidence 87 666677889999999999999874 334556666666554 7899999999998754 3
Q ss_pred HHHHHHHH
Q 011082 442 EVYEELER 449 (494)
Q Consensus 442 e~~~~L~~ 449 (494)
..++++++
T Consensus 171 ~~~~~i~~ 178 (548)
T 3vqt_A 171 DVMADIEQ 178 (548)
T ss_dssp HHHHHHHH
T ss_pred Hhhhhhhh
Confidence 44444443
No 193
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.37 E-value=2e-12 Score=130.78 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=99.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
+|.|+|..|||||||++.+.+.... ......+|.......+. ....+.+|||+|..+.... .+ ....+++.+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP--SY--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch--hh--hhhhhccCCCE
Confidence 4789999999999999998865221 11112234444333332 2268999999999773210 00 12356788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-------HHHHHHHHc-C------
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-------VYEELERRV-Q------ 452 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-------~~~~L~~~~-~------ 452 (494)
+|+|+|+++.. ......+..++.++... ..+.|+++|+||+|+...++ +.....+.+ .
T Consensus 76 ~IlV~Ditd~~-----~~~~~~l~~~l~~~~~~---~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~ 147 (331)
T 3r7w_B 76 LVYVIDSQDEY-----INAITNLAMIIEYAYKV---NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV 147 (331)
T ss_dssp EEEECCCSSCT-----THHHHHHHHHHHHHHHH---CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred EEEEEECCchH-----HHHHHHHHHHHHHHhhc---CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence 99999998720 12223333334444333 23689999999999986432 222222222 1
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+..++.+||++ .+|.+.+..|.+.+-+
T Consensus 148 ~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 148 QVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred CceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 35789999987 5899988888765543
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.30 E-value=6.9e-12 Score=135.84 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=81.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCC---cccccceeecceee-----------------------------------
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLG----------------------------------- 346 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~---i~~~~ftTl~p~~g----------------------------------- 346 (494)
..+.|+|+|.+|||||||+|+|++.+.. ++..+.||.....-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3468999999999999999999998753 55566553211000
Q ss_pred -EEeecC---cceEEecCCCccCCccc--ccc--chhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHh
Q 011082 347 -NMNFDD---IQITVADIPGLIKGAHE--NRG--LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH 418 (494)
Q Consensus 347 -~v~~~~---~~~~l~DtPGli~~a~~--~~~--L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~ 418 (494)
.+.+++ ..+.++||||+...... ... +.......+..+|++|+|+|++.. ........++..+..
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~-------~~~~~~~~~l~~l~~ 216 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL-------EISDEFSEAIGALRG 216 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC-------CCCHHHHHHHHHTTT
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC-------CCCHHHHHHHHHHHh
Confidence 000111 36899999999763221 111 123334567899999999999762 223344444444422
Q ss_pred hhcccCCCCEEEEEeCCCcCChHHHH
Q 011082 419 HQEGLSDRPSLVVANKIDEDGAEEVY 444 (494)
Q Consensus 419 ~~~~l~~~P~IlVlNKiDl~~~~e~~ 444 (494)
...|+++|+||+|+...++..
T Consensus 217 -----~~~pvilVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 217 -----HEDKIRVVLNKADMVETQQLM 237 (550)
T ss_dssp -----CGGGEEEEEECGGGSCHHHHH
T ss_pred -----cCCCEEEEEECCCccCHHHHH
Confidence 257899999999999766543
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.29 E-value=5.9e-12 Score=119.12 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=91.0
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC---C---cccccceeecce------eeEE--------------------eecC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP---A---VGHYSFTTLRPN------LGNM--------------------NFDD 352 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~---~---i~~~~ftTl~p~------~g~v--------------------~~~~ 352 (494)
..+.|+|+|++|||||||+++|++... . +...+++|.+.. ...+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 456899999999999999999986411 1 111122211110 0000 1123
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
..++++||+|...... .+ . ..++.+++|+|+... .. ..... ... ...|.++|+
T Consensus 109 ~d~iiidt~G~~~~~~---~~--~-----~~~~~~i~vvd~~~~-------~~--~~~~~---~~~-----~~~~~iiv~ 161 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DF--D-----LGENYRVVMVSVTEG-------DD--VVEKH---PEI-----FRVADLIVI 161 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GC--C-----CSCSEEEEEEEGGGC-------TT--HHHHC---HHH-----HHTCSEEEE
T ss_pred CCEEEEeCCCCCCCCc---hh--c-----cccCcEEEEEeCCCc-------ch--hhhhh---hhh-----hhcCCEEEE
Confidence 5678999998522110 00 0 134678999998762 11 11111 111 147899999
Q ss_pred eCCCcCCh-----HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 433 NKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 433 NKiDl~~~-----~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
||+|+... ++..+.+.+..+..+++++||+++.|+++|+++|.+.+....
T Consensus 162 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 162 NKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp ECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred ecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 99998532 334444544444578999999999999999999998886654
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=3.1e-12 Score=124.40 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=72.5
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
..++++||||..+..... .+...+..++.. +++++|+|.+.. ..+......+...+... .....|.++|+
T Consensus 109 ~d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~------~~~~~~~~~~~~~~~~~--~~~~~p~~iv~ 178 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEIL------KKPNDYCFVRFFALLID--LRLGATTIPAL 178 (262)
T ss_dssp CSEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGC------CSHHHHHHHHHHHHHHH--HHHTSCEEEEE
T ss_pred CCEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhh------cCHHHHHHHHHHHHHHh--cccCCCeEEEE
Confidence 479999999987632211 123333344555 889999998652 12222221111111111 01267999999
Q ss_pred eCCCcCChHHH---HHH----------H------------------HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 433 NKIDEDGAEEV---YEE----------L------------------ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 433 NKiDl~~~~e~---~~~----------L------------------~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+|+....+. .+. + .+.....+++++||++++|+++|+++|.+.+...
T Consensus 179 NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 179 NKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp CCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 99999865421 111 1 1222334789999999999999999999887654
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.24 E-value=1e-11 Score=136.93 Aligned_cols=157 Identities=20% Similarity=0.344 Sum_probs=113.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHH---cCCCC---------cccc------cceeecceeeEEeecCcceEEecCCCccCCc
Q 011082 306 IADVGLVGMPSAGKSTLLGAIS---RAKPA---------VGHY------SFTTLRPNLGNMNFDDIQITVADIPGLIKGA 367 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt---~~~~~---------i~~~------~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a 367 (494)
+.+|+|+|...+|||||..+|. +.-.. +.|+ ...|+....-.+.+++..+.++||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D-- 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD-- 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH--
Confidence 4589999999999999999984 33111 1222 13456666667788889999999999987
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHH
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 445 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~ 445 (494)
+.....+.+.-+|..|+|||+.... . .+.+.++..+..+ +.|.|+++||+|.... ....+
T Consensus 80 -----F~~Ev~raL~~~DgavlVVDa~~GV------~--~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a~~~~~~~ 141 (638)
T 3j25_A 80 -----FLAEVYRSLSVLDGAILLISAKDGV------Q--AQTRILFHALRKM-----GIPTIFFINKIDQNGIDLSTVYQ 141 (638)
T ss_dssp -----THHHHHHHHTTCSEEECCEESSCTT------C--SHHHHHHHHHHHH-----TCSCEECCEECCSSSCCSHHHHH
T ss_pred -----HHHHHHHHHHHhCEEEEEEeCCCCC------c--HHHHHHHHHHHHc-----CCCeEEEEeccccccCCHHHHHH
Confidence 5666778888899999999998742 2 2345555555544 6799999999998643 22233
Q ss_pred HHHHHc---------------------------------------------------------------CCCCEEEEEcc
Q 011082 446 ELERRV---------------------------------------------------------------QGVPIYPVCAV 462 (494)
Q Consensus 446 ~L~~~~---------------------------------------------------------------~~~~ii~ISA~ 462 (494)
++++.+ .-.|++..||+
T Consensus 142 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~ 221 (638)
T 3j25_A 142 DIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAK 221 (638)
T ss_dssp HHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCST
T ss_pred HHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccc
Confidence 332221 12467888999
Q ss_pred cCCCHHHHHHHHHHHhcccC
Q 011082 463 LEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~~~ 482 (494)
++.|++.|++.|.+.+....
T Consensus 222 ~~~Gv~~LLd~i~~~~p~p~ 241 (638)
T 3j25_A 222 SNIGIDNLIEVITNKFYSST 241 (638)
T ss_dssp TCCSHHHHHHHHHHSCCCSG
T ss_pred cCCCchhHhhhhhccccCcc
Confidence 99999999999998876543
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=5.1e-11 Score=119.48 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=74.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccc-ccc------eeec-ceeeEEe-ecC--cceEEecCCCccCCccc---cccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGH-YSF------TTLR-PNLGNMN-FDD--IQITVADIPGLIKGAHE---NRGL 373 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~-~~f------tTl~-p~~g~v~-~~~--~~~~l~DtPGli~~a~~---~~~L 373 (494)
+|+|||++|||||||+++|.+....... .++ .|.. ...+.+. .++ ..+.++||+|+...... ...+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l 99 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 99 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence 5699999999999999999875222111 111 1111 1122221 122 46899999998432110 0111
Q ss_pred hh----hHHHHHHhh-------------ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 011082 374 GH----AFLRHIERT-------------KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 436 (494)
Q Consensus 374 ~~----~fl~~i~~a-------------d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiD 436 (494)
.. .+-..+... +++|++++.+.. +.++.. ..++..+ . ...|+++|+||+|
T Consensus 100 ~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-----~Ld~~~--~~~l~~l---~---~~~~iilV~~K~D 166 (301)
T 2qnr_A 100 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-----GLKPLD--VAFMKAI---H---NKVNIVPVIAKAD 166 (301)
T ss_dssp HHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-----SCCHHH--HHHHHHH---T---TTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-----CCCHHH--HHHHHHH---H---hcCCEEEEEEeCC
Confidence 11 111223322 235555554321 123333 1232322 1 2469999999999
Q ss_pred cCChHHH---HHHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 437 EDGAEEV---YEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 437 l~~~~e~---~~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+....+. .+.+.+.. .+.+++++||+++ |+++++..+.+.+.+..
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 9875432 12222222 3578999999999 99999998888775543
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.14 E-value=1.5e-10 Score=109.82 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=42.9
Q ss_pred CCCEEEEEeCCCcCCh-----HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 425 DRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 425 ~~P~IlVlNKiDl~~~-----~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
..|.++|+||+|+... ++..+.+.+..+..+++++||+++.|+++|++.|.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5789999999998643 2333334443346789999999999999999999887754
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.13 E-value=6.7e-11 Score=134.12 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc----------cc------ccceeecceeeEEeec----------------Cc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV----------GH------YSFTTLRPNLGNMNFD----------------DI 353 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------~~------~~ftTl~p~~g~v~~~----------------~~ 353 (494)
..+|+|+|.+|+|||||+++|+.....+ .+ ....|+......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 3479999999999999999997641111 11 1223444444444443 46
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEe
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN 433 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlN 433 (494)
.+.++||||+.+ +.......+..+|.+|+|+|+++. ...... .++..+.. .+.|.|+|+|
T Consensus 99 ~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~-~~~~~~~~-----~~~p~ilviN 158 (842)
T 1n0u_A 99 LINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDTIEG-------VCVQTE-TVLRQALG-----ERIKPVVVIN 158 (842)
T ss_dssp EEEEECCCCCCS-------SCHHHHHHHHTCSEEEEEEETTTB-------SCHHHH-HHHHHHHH-----TTCEEEEEEE
T ss_pred eEEEEECcCchh-------hHHHHHHHHHhCCEEEEEEeCCCC-------CCHHHH-HHHHHHHH-----cCCCeEEEEE
Confidence 789999999976 444567788999999999999873 223332 23333322 2689999999
Q ss_pred CCCcC
Q 011082 434 KIDED 438 (494)
Q Consensus 434 KiDl~ 438 (494)
|+|+.
T Consensus 159 K~D~~ 163 (842)
T 1n0u_A 159 KVDRA 163 (842)
T ss_dssp CHHHH
T ss_pred CCCcc
Confidence 99986
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.09 E-value=1e-09 Score=122.25 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=79.7
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC--------C----CCccc------ccceeecceeeEEeec-------CcceEEe
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA--------K----PAVGH------YSFTTLRPNLGNMNFD-------DIQITVA 358 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~--------~----~~i~~------~~ftTl~p~~g~v~~~-------~~~~~l~ 358 (494)
..+.+|+|||...+|||||..+|.-. + ..+.| ....|+....-.+.+. ++.+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 34558999999999999999998421 0 01111 1223444444455543 4679999
Q ss_pred cCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC
Q 011082 359 DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 359 DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~ 438 (494)
||||+.+ +.....+.++-+|..|+|||+... ...+.+.++.+...+ +.|.|+++||+|..
T Consensus 91 DTPGHvD-------F~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVD-------FTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKY-----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTT-------CHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHH-----TCCEEEEEECSSST
T ss_pred eCCCCcc-------cHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHc-----CCCeEEEEcccccc
Confidence 9999987 666677889999999999999874 334556666665544 68999999999986
Q ss_pred C
Q 011082 439 G 439 (494)
Q Consensus 439 ~ 439 (494)
.
T Consensus 151 ~ 151 (709)
T 4fn5_A 151 G 151 (709)
T ss_dssp T
T ss_pred C
Confidence 4
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=2.9e-10 Score=119.02 Aligned_cols=157 Identities=17% Similarity=0.237 Sum_probs=68.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccccc-------ceeecceeeEE-eecC--cceEEecCCCccCCccccccchhhH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYS-------FTTLRPNLGNM-NFDD--IQITVADIPGLIKGAHENRGLGHAF 377 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~-------ftTl~p~~g~v-~~~~--~~~~l~DtPGli~~a~~~~~L~~~f 377 (494)
.|+|||++|||||||+++|++.......+. .++.....+.+ ...+ ..+.++||+|+....... .....+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~-~~~~~i 111 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS-NCWQPV 111 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------CHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccch-hhHHHH
Confidence 469999999999999999998754222111 11111111211 1122 368999999996532110 000011
Q ss_pred H--------HH-----------HHh--hceeeEEEecC-CCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCC
Q 011082 378 L--------RH-----------IER--TKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 435 (494)
Q Consensus 378 l--------~~-----------i~~--ad~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKi 435 (494)
. .. +.. ++++|++++.+ .. .++.+ ..++..|. ...|+|+|+||+
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~------L~~~d--~~~lk~L~------~~v~iIlVinK~ 177 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG------LKPLD--IEFMKRLH------EKVNIIPLIAKA 177 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS------CCHHH--HHHHHHHT------TTSEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC------CCHHH--HHHHHHHh------ccCcEEEEEEcc
Confidence 0 00 111 23455555543 21 22322 23444442 268999999999
Q ss_pred CcCChHHHH---HHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 436 DEDGAEEVY---EELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 436 Dl~~~~e~~---~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
|+....+.. +.+.+.+ .+.+++.+||.++.++++++..|...++
T Consensus 178 Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 178 DTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 998765432 2222222 3578899999999999988887776543
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=4.4e-11 Score=123.35 Aligned_cols=144 Identities=19% Similarity=0.143 Sum_probs=97.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC------CCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA------KPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~------~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
+|+++|.+|+|||||+|+|++. ...++++++||.+..... ++ ..+.++||||+.........+...++.++
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 6999999999999999999986 456788999998766543 22 35899999999876544455666777777
Q ss_pred ---HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCCCC
Q 011082 382 ---ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVP 455 (494)
Q Consensus 382 ---~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~~~ 455 (494)
...+.++++++...... ...... +. +. .....|+++++||+|.... +...+.+++.+ +..
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~----~g~l~~-------l~-~l-~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~-g~~ 306 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLF----FGGLAR-------LD-YI-KGGRRSFVCYMANELTVHRTKLEKADSLYANQL-GEL 306 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEE----ETTTEE-------EE-EE-ESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB-TTT
T ss_pred hcccccCceEEEEcCCceEE----ECCEEE-------EE-Ec-cCCCceEEEEecCCcccccccHHHHHHHHHHhc-CCc
Confidence 77899999999743100 000000 00 00 1135789999999998643 34455566665 345
Q ss_pred EEEEEcccCCCHH
Q 011082 456 IYPVCAVLEEGVP 468 (494)
Q Consensus 456 ii~ISA~~g~gI~ 468 (494)
+++.++....++.
T Consensus 307 l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 307 LSPPSKRYAAEFP 319 (369)
T ss_dssp BCSSCGGGTTTCC
T ss_pred cCCCCchhhhhcc
Confidence 6666665555443
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.03 E-value=2.7e-10 Score=118.96 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=91.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-Cccccc----ceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYS----FTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRH 380 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~----ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~ 380 (494)
.|+|+|+||||||||+|+|++... ..+... -+|. .+.+.... ..+.++|+||+... ......++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~---~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~ 143 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM---ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEK 143 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C---CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce---eEEeccccccCCeeehHhhcccch----HHHHHHHHHH
Confidence 899999999999999999999632 111111 1111 13332222 36899999998532 1122233333
Q ss_pred HH--hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC------------ChHHHHHH
Q 011082 381 IE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED------------GAEEVYEE 446 (494)
Q Consensus 381 i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~------------~~~e~~~~ 446 (494)
+. ..+..++ ++... ...+...+...+.. ..+|.++|+||.|+. ...++.+.
T Consensus 144 ~~L~~~~~~~~-lS~G~---------~~kqrv~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 144 MKFYEYDFFII-ISATR---------FKKNDIDIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp TTGGGCSEEEE-EESSC---------CCHHHHHHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred cCCCccCCeEE-eCCCC---------ccHHHHHHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHH
Confidence 22 2233333 44331 11222233334432 268999999998864 33444444
Q ss_pred HHHH---------cCCCCEEEEEcc--cCCCHHHHHHHHHHHhcccCCcc
Q 011082 447 LERR---------VQGVPIYPVCAV--LEEGVPELKVGLRMLVNGEKSER 485 (494)
Q Consensus 447 L~~~---------~~~~~ii~ISA~--~g~gI~~L~~~I~~~l~~~~~~~ 485 (494)
+++. .+...+|++|++ .+.|+++|++.|...+++.++..
T Consensus 209 l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 209 IRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 4443 123478999995 55579999999999998776543
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.93 E-value=1.6e-10 Score=119.19 Aligned_cols=140 Identities=20% Similarity=0.193 Sum_probs=84.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC-------CCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA-------KPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLR 379 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~-------~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~ 379 (494)
.+|+++|.+|+|||||+|+|++. ...++++++||.+..... ++ ..+.++||||+.........+....+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 37999999999999999999885 234688899998766543 32 248999999998754333345555555
Q ss_pred HH---HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHcCC
Q 011082 380 HI---ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQG 453 (494)
Q Consensus 380 ~i---~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~~~ 453 (494)
++ ...+.+++++|...... ...+.. +. +.. -...|+++++||+|.... +...+.+++.+ +
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~-------~g~l~~----~d-~l~-~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~-g 303 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLF-------FSGLAR----FD-YVS-GGRRAFTCHFSNRLTIHRTKLEKADELYKNHA-G 303 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEE-------ETTTEE----EE-EEE-SSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB-T
T ss_pred HhccccccCceEEEEcCCCEEE-------EcceEE----EE-Eec-CCCceEEEEecCccccccccHHHHHHHHHHHh-C
Confidence 53 45578888888742100 000000 00 001 125799999999998754 34445566655 3
Q ss_pred CCEEEEEccc
Q 011082 454 VPIYPVCAVL 463 (494)
Q Consensus 454 ~~ii~ISA~~ 463 (494)
..+++.++..
T Consensus 304 ~~l~p~~~~~ 313 (368)
T 3h2y_A 304 DLLSPPTPEE 313 (368)
T ss_dssp TTBCSSCHHH
T ss_pred CccCCCchhh
Confidence 3455555543
No 206
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.79 E-value=1.8e-08 Score=96.65 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=85.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------------EEec
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVAD 359 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------------~l~D 359 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 89 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ 89 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEec
Confidence 468999999999999999999999999999997 445566666655221 2223
Q ss_pred CCCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 360 IPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 360 tPGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
.+.+..... ++..+...+ ....+.++-++-.+++.+..+......+..+.+.+ .++.++...|.++++
T Consensus 90 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv-----~laral~~~p~lllL 164 (224)
T 2pcj_A 90 FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRV-----AIARALANEPILLFA 164 (224)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH-----HHHHHTTTCCSEEEE
T ss_pred CcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHHcCCCEEEE
Confidence 333332111 111111000 00111222233333443322222223445555444 334567789999998
Q ss_pred ----eCCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 433 ----NKIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 433 ----NKiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
+.+|......+.+.|.+.. .+..++.+|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 7888877777777776654 3455555553
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=6.2e-09 Score=108.86 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=78.7
Q ss_pred EEEEeeccce--eeeeCCCCCcHHHHHHHHHcCCCC---ccc-ccceeecceeeEEeecC---cceEEecCCCccCCccc
Q 011082 299 LILELKSIAD--VGLVGMPSAGKSTLLGAISRAKPA---VGH-YSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHE 369 (494)
Q Consensus 299 i~lelk~~~~--V~LVG~~nAGKSTLLn~Lt~~~~~---i~~-~~ftTl~p~~g~v~~~~---~~~~l~DtPGli~~a~~ 369 (494)
++|+++.+.. |+|||++|||||||||+|++.... +.. .+..+.. ..+.+.... ..+.++|++|+......
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~ 111 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQINK 111 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-CCH
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhcccc
Confidence 4455666667 999999999999999999997421 111 1222222 233333332 26899999998653211
Q ss_pred cc-------cchhhHHHHHHh-------------h--c-eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCC
Q 011082 370 NR-------GLGHAFLRHIER-------------T--K-VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR 426 (494)
Q Consensus 370 ~~-------~L~~~fl~~i~~-------------a--d-~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~ 426 (494)
.. .+...|-..+.. + | ++++|+|..+. ....+ ..++..| . ...
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~-------l~~~D-ieilk~L---~---~~~ 177 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS-------LKSLD-LVTMKKL---D---SKV 177 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC----------CHHH-HHHHHHT---C---SCS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC-------CCHHH-HHHHHHH---h---hCC
Confidence 00 011122121211 1 2 35666676542 11122 2222322 1 368
Q ss_pred CEEEEEeCCCcCChHHH---HHHHHHHc--CCCCEEEEEc
Q 011082 427 PSLVVANKIDEDGAEEV---YEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 427 P~IlVlNKiDl~~~~e~---~~~L~~~~--~~~~ii~ISA 461 (494)
|+|+|+||+|.....+. .+.+.+.+ .+.+++.+|.
T Consensus 178 ~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 178 NIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 99999999999887553 23344322 4677888875
No 208
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.77 E-value=1.5e-08 Score=96.66 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=85.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce--------EEecCCCccCCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI--------TVADIPGLIKGA 367 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~--------~l~DtPGli~~a 367 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.+.|.+....
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKI 93 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTS
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCC
Confidence 3478899999999999999999999999999997 456677777766321 233334443321
Q ss_pred c--ccccchhhHH---HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcC
Q 011082 368 H--ENRGLGHAFL---RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDED 438 (494)
Q Consensus 368 ~--~~~~L~~~fl---~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~ 438 (494)
. ++..+...+. ..-+.++-++-.+++... +......+..+.+.+ .+..++...|.++++ +.+|..
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv-----~laraL~~~p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRV-----QLASTLLVNAEIYVLDDPVVAIDED 167 (214)
T ss_dssp BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHH-----HHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHH-----HHHHHHHhCCCEEEEECCCcCCCHH
Confidence 1 1110110000 000111112222233221 111122444554444 334567789999999 889998
Q ss_pred ChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 439 GAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 439 ~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
....+.+.|.+.. .+..++.+|.
T Consensus 168 ~~~~l~~~l~~~~~~g~tiiivtH 191 (214)
T 1sgw_A 168 SKHKVLKSILEILKEKGIVIISSR 191 (214)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeC
Confidence 8887777776654 2445665554
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.76 E-value=5.3e-09 Score=111.80 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=86.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHH------cCCCCcccc-cc--ee---------e--cceee----------------EEe
Q 011082 306 IADVGLVGMPSAGKSTLLGAIS------RAKPAVGHY-SF--TT---------L--RPNLG----------------NMN 349 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt------~~~~~i~~~-~f--tT---------l--~p~~g----------------~v~ 349 (494)
...|+|+|.+||||||+++.|+ +.++.+.+. ++ .+ . -+..+ .+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999998 554322110 00 00 0 00000 011
Q ss_pred ecCcceEEecCCCccCCccccccchhhHHH--HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC
Q 011082 350 FDDIQITVADIPGLIKGAHENRGLGHAFLR--HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 427 (494)
Q Consensus 350 ~~~~~~~l~DtPGli~~a~~~~~L~~~fl~--~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 427 (494)
..+..++|+||||...... .+...+.. .+..+|.+++|+|+... .+..... .. +.. ..|
T Consensus 181 ~~~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g------~~~~~~a----~~---~~~---~~~ 241 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIG------QACEAQA----KA---FKD---KVD 241 (504)
T ss_dssp HTTCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCC------TTHHHHH----HH---HHH---HHC
T ss_pred HCCCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEecccc------ccHHHHH----HH---HHh---hcC
Confidence 1457899999999865211 12112111 12367899999998762 2222221 22 211 146
Q ss_pred -EEEEEeCCCcCChH-HHHHHHHHHc-----------------CCCCEEEEEcccCCC-HHHHHHHHHHH
Q 011082 428 -SLVVANKIDEDGAE-EVYEELERRV-----------------QGVPIYPVCAVLEEG-VPELKVGLRML 477 (494)
Q Consensus 428 -~IlVlNKiDl~~~~-e~~~~L~~~~-----------------~~~~ii~ISA~~g~g-I~~L~~~I~~~ 477 (494)
.++|+||+|..... ..+. +...+ +..+.+++|+..|.| +++|++++.+.
T Consensus 242 i~gvVlNK~D~~~~~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 242 VASVIVTKLDGHAKGGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCEEEECTTSCCCCTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ceEEEEeCCccccchHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 48899999987542 2222 22222 112234578889999 99999999866
No 210
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.74 E-value=1.7e-08 Score=97.55 Aligned_cols=149 Identities=21% Similarity=0.249 Sum_probs=86.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc----------------e-EEec
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ----------------I-TVAD 359 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~----------------~-~l~D 359 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.. + ++..
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 90 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEec
Confidence 478999999999999999999999999999997 45667777776521 1 2334
Q ss_pred CCCccCCcc--ccccchhh--------HHHHHHhhceeeEEEecCCCC-CCCCCCCCHHHHHHHHHHHHhhhcccCCCCE
Q 011082 360 IPGLIKGAH--ENRGLGHA--------FLRHIERTKVLAYVVDLASGL-DGRKGIKPWKQLRDLIIELEHHQEGLSDRPS 428 (494)
Q Consensus 360 tPGli~~a~--~~~~L~~~--------fl~~i~~ad~ll~VvD~s~~~-~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 428 (494)
.|.+..... ++..++.. -....+.+.-++-.+++.+.. +......+..+.+.+ .++.++...|.
T Consensus 91 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv-----~iAral~~~p~ 165 (235)
T 3tif_A 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV-----AIARALANNPP 165 (235)
T ss_dssp TCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH-----HHHHHHTTCCS
T ss_pred CCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH-----HHHHHHHcCCC
Confidence 444433211 11111000 001111222222222332211 111223445555544 33456778999
Q ss_pred EEEE----eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 429 LVVA----NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 429 IlVl----NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
++++ +-+|......+.+.+.+... +..++.+|+
T Consensus 166 llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 9998 88888777777777766542 566776665
No 211
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.72 E-value=4.3e-08 Score=100.59 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=90.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce----------------EEecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------------TVADI 360 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~----------------~l~Dt 360 (494)
..++|++..+..++|+|++|||||||+++|++. +.|+.|.+.+++..+ ++...
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~ 113 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQH 113 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSS
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCC
Confidence 468999999999999999999999999999997 456677777766322 22222
Q ss_pred CCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE-
Q 011082 361 PGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 432 (494)
Q Consensus 361 PGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl- 432 (494)
+.+..... ++..++..+ ....++++-++-.+++.+..+......+..+.+.+ .++.+|...|.|+++
T Consensus 114 ~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRV-----aIArAL~~~P~lLLlD 188 (366)
T 3tui_C 114 FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV-----AIARALASNPKVLLCD 188 (366)
T ss_dssp CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHH-----HHHHHTTTCCSEEEEE
T ss_pred CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEE
Confidence 33332211 111111000 01112233334444444333333334556665554 334577899999998
Q ss_pred ---eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 ---NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 ---NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+-+|......+++.|++.. .+..++.||+
T Consensus 189 EPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 189 QATSALDPATTRSILELLKDINRRLGLTILLITH 222 (366)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 7888777777777776654 3667777775
No 212
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.71 E-value=2e-08 Score=97.35 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=86.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCcc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLI 364 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli 364 (494)
-..++|+++. ..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.+.+.+.
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 5678999999 99999999999999999999997 456667777665321 112222222
Q ss_pred CCcc--ccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCC
Q 011082 365 KGAH--ENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKI 435 (494)
Q Consensus 365 ~~a~--~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKi 435 (494)
.... ++..+...+ ....++++-++-.+++.+..+......+..+.+.+. ++.++...|.++++ +.+
T Consensus 83 ~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~-----lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVA-----LARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHH-----HHHHHTTCCSSBEEESTTSSC
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-----HHHHHHcCCCEEEEeCCcccC
Confidence 2111 111111000 011122233333334433222222234555555443 34466788999998 888
Q ss_pred CcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 436 DEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 436 Dl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
|......+.+.|.+.. .+..++.+|+
T Consensus 158 D~~~~~~~~~~l~~l~~~~g~tvi~vtH 185 (240)
T 2onk_A 158 DLKTKGVLMEELRFVQREFDVPILHVTH 185 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 9877777777776653 2566777765
No 213
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.71 E-value=3.1e-08 Score=96.94 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=85.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc-----------e-EEecCCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-----------I-TVADIPGLI 364 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~-----------~-~l~DtPGli 364 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.. + ++.+.+.+.
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~ 100 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY 100 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCC
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCC
Confidence 468899999999999999999999999999997 45666777666522 1 233444443
Q ss_pred CCcc--ccccchhhHH----HH-HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----e
Q 011082 365 KGAH--ENRGLGHAFL----RH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 433 (494)
Q Consensus 365 ~~a~--~~~~L~~~fl----~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----N 433 (494)
.... ++..+...+. .. .+.++-++-.+++.+..+......+..+.+.+. ++.++...|.++++ +
T Consensus 101 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~-----lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 101 RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL-----IARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH-----HHHHHTTCCSEEEEESTTT
T ss_pred CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH-----HHHHHHcCCCEEEEeCCcc
Confidence 3211 1111110000 00 012222233333332212112234455555443 33466789999998 8
Q ss_pred CCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 434 KIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 434 KiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
.+|......+.+.|.+.. .+..++.+|.
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtH 204 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSH 204 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 888877777777776654 3555666654
No 214
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.71 E-value=1.7e-08 Score=99.16 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=83.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce---------------EEecCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI---------------TVADIP 361 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~---------------~l~DtP 361 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.+.+
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~ 109 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRF 109 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSC
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCC
Confidence 468999999999999999999999999999997 445666666655322 122222
Q ss_pred CccCCcc--ccccchh-hH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE-
Q 011082 362 GLIKGAH--ENRGLGH-AF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 432 (494)
Q Consensus 362 Gli~~a~--~~~~L~~-~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl- 432 (494)
.+..... ++..++. .+ ....+.++-++-.+++.+..+......+..+.+.+. ++.++...|.++++
T Consensus 110 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~-----lAraL~~~p~lllLD 184 (263)
T 2olj_A 110 NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA-----IARALAMEPKIMLFD 184 (263)
T ss_dssp CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-----HHHHHTTCCSEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH-----HHHHHHCCCCEEEEe
Confidence 2222111 1110100 00 000112222222233332222222234455554443 33466789999998
Q ss_pred ---eCCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 433 ---NKIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 433 ---NKiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
+-+|......+.+.|.+.. .+..++.+|.
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 217 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 8888877777777776654 3455555553
No 215
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.70 E-value=4.8e-08 Score=94.56 Aligned_cols=149 Identities=23% Similarity=0.231 Sum_probs=83.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc-------------e-EEecCCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-------------I-TVADIPG 362 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~-------------~-~l~DtPG 362 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.. + ++.+.+.
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 91 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR 91 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc
Confidence 468899999999999999999999999999997 44556666655421 1 2222233
Q ss_pred ccCCcc--ccccchh----hHHHHHHhhceeeEEEe-cCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE---
Q 011082 363 LIKGAH--ENRGLGH----AFLRHIERTKVLAYVVD-LASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA--- 432 (494)
Q Consensus 363 li~~a~--~~~~L~~----~fl~~i~~ad~ll~VvD-~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl--- 432 (494)
+..... ++..++. ......+.++.++-.++ +.+..+......+..+.+.+.. ..++...|.++++
T Consensus 92 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~l-----AraL~~~p~lllLDEP 166 (240)
T 1ji0_A 92 IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAI-----GRALMSRPKLLMMDEP 166 (240)
T ss_dssp CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHH-----HHHHTTCCSEEEEECT
T ss_pred cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHH-----HHHHHcCCCEEEEcCC
Confidence 322111 1110100 00000111111222221 2221122222355555554433 3456789999998
Q ss_pred -eCCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 433 -NKIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 433 -NKiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
+.+|......+.+.|.+.. .+..++.+|+
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtH 197 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 8888877777777776654 4567777764
No 216
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.66 E-value=3.4e-08 Score=96.97 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=38.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
..++|+++.+..++|+|++|||||||+++|++. +.|..|.+.+++
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g 67 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNG 67 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETT
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECC
Confidence 468999999999999999999999999999997 445566666555
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.66 E-value=8.8e-08 Score=94.43 Aligned_cols=123 Identities=19% Similarity=0.306 Sum_probs=67.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-Cccc-------ccceeecceeeEEeecC---cceEEecCCCccCCccccc---cc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGH-------YSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENR---GL 373 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~-------~~ftTl~p~~g~v~~~~---~~~~l~DtPGli~~a~~~~---~L 373 (494)
+|+|||++|||||||+|+|++... ..+. .+.++.....+.+.... ..+.++|+||+........ .+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 689999999999999999998632 2121 11122222333333222 3679999999865322110 01
Q ss_pred ----hhhHHHHHH--------------hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCC
Q 011082 374 ----GHAFLRHIE--------------RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 435 (494)
Q Consensus 374 ----~~~fl~~i~--------------~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKi 435 (494)
...+...+. ++++.++++|.... +..+.+ ..++..|.. ..++|+|+||+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-----gL~~lD--~~~l~~L~~------~~~vI~Vi~K~ 150 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-----SLRPLD--LEFMKHLSK------VVNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-----SCCHHH--HHHHHHHHT------TSEEEEEETTG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-----cCCHHH--HHHHHHHHh------cCcEEEEEecc
Confidence 011111111 24677888885531 123332 334444432 27899999999
Q ss_pred CcCChHHH
Q 011082 436 DEDGAEEV 443 (494)
Q Consensus 436 Dl~~~~e~ 443 (494)
|.....+.
T Consensus 151 D~lt~~e~ 158 (270)
T 3sop_A 151 DTMTLEEK 158 (270)
T ss_dssp GGSCHHHH
T ss_pred ccCCHHHH
Confidence 99887543
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.65 E-value=5.6e-08 Score=96.13 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=84.3
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce---------------EEecC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI---------------TVADI 360 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~---------------~l~Dt 360 (494)
-..++|+++.+..++|+|++|||||||+++|++. +.|..|.+.+++..+ ++...
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~ 92 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQD 92 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEECCcccccHHHHhCcEEEEEcC
Confidence 3578999999999999999999999999999997 456667777766332 11122
Q ss_pred CC-ccCCcc--ccccchhh-----HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 361 PG-LIKGAH--ENRGLGHA-----FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 361 PG-li~~a~--~~~~L~~~-----fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
|. ...... ++..++.. -....++++-++-.+++.+..+......+..+.+.+ .++.++...|.++++
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv-----~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 93 PDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV-----AIAGVLVMEPKVLIL 167 (275)
T ss_dssp GGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH-----HHHHHHTTCCSEEEE
T ss_pred cccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH-----HHHHHHHcCCCEEEE
Confidence 21 000000 11000000 000111222222233333222222223445555444 334567789999998
Q ss_pred ----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 ----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 ----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+-+|......+.+.|.+.. .+..++.+|+
T Consensus 168 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 202 (275)
T 3gfo_A 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202 (275)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred ECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence 7888877777766666543 2556666664
No 219
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.64 E-value=5.5e-08 Score=95.01 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=80.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcc--ccccch
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH--ENRGLG 374 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~--~~~~L~ 374 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+...--++.+.|.+..... ++..++
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~ 90 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG 90 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-----------SCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGG
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHh
Confidence 578899999999999999999999999999997 3344454432211112222232221111 111010
Q ss_pred hh---------HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChH
Q 011082 375 HA---------FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAE 441 (494)
Q Consensus 375 ~~---------fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~ 441 (494)
.. -....+.++-++-.+++.+..+......+..+.+.+.. +.++...|.++++ +.+|.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l-----AraL~~~p~lllLDEPts~LD~~~~~ 165 (253)
T 2nq2_C 91 RSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILI-----ARAIASECKLILLDEPTSALDLANQD 165 (253)
T ss_dssp GGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH-----HHHHHTTCSEEEESSSSTTSCHHHHH
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHH-----HHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 00 00001122222222333322221222345555554433 3455688999998 788887777
Q ss_pred HHHHHHHHHc-C-CCCEEEEEc
Q 011082 442 EVYEELERRV-Q-GVPIYPVCA 461 (494)
Q Consensus 442 e~~~~L~~~~-~-~~~ii~ISA 461 (494)
.+.+.|.+.. . +..++.+|+
T Consensus 166 ~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 166 IVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp HHHHHHHHHHHTSCCEEEEEES
T ss_pred HHHHHHHHHHHhcCCEEEEEec
Confidence 7777776654 2 556666654
No 220
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.63 E-value=7.3e-08 Score=98.42 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=90.1
Q ss_pred ceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCc
Q 011082 295 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGL 363 (494)
Q Consensus 295 e~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGl 363 (494)
--..++|+++.+..++|+|++||||||||+.|++. +.|..|.+.+++..+ ++...+.+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 34578999999999999999999999999999997 556777777776322 22233333
Q ss_pred cCCcc--ccccchhhHH---HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 364 IKGAH--ENRGLGHAFL---RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 364 i~~a~--~~~~L~~~fl---~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
..... ++..++.... .. ++++-++-.+++.+..+......+..+.+.+ .+..+|...|.++++ +.
T Consensus 84 ~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRv-----alAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRV-----ALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH-----HHHHHTTSCCSEEEEESSSTT
T ss_pred CCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECcccc
Confidence 32111 1111111000 00 2233333344444332222233455555444 344577889999998 88
Q ss_pred CCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+|......+.+.|++.. .+.+++.+|+
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 88877777777776654 2566777764
No 221
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.62 E-value=5.7e-08 Score=99.47 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=84.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce---------------EEecCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI---------------TVADIP 361 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~---------------~l~DtP 361 (494)
..++|++..+..++|+|++|||||||+++|++. +.|..|.+.+++..+ ++...+
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~ 89 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG 89 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTC
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEECcccccccchhhCCEEEEeCCC
Confidence 478999999999999999999999999999997 455666666665332 111122
Q ss_pred CccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE--
Q 011082 362 GLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 432 (494)
Q Consensus 362 Gli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl-- 432 (494)
.++.... ++..++... ....++++-++-.+++.+..+......+..+.+.+ .++.+|...|.++++
T Consensus 90 ~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRV-----alArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 90 VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRA-----ALARALAPDPELILLDE 164 (359)
T ss_dssp CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEES
T ss_pred cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEeC
Confidence 2222111 111111000 00111222223333333322222223445554444 334567789999998
Q ss_pred --eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 --NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 --NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+-+|.....++.+.+.+.. .+.+++.||+
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTH 197 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSH 197 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 7888776666665555543 3567777765
No 222
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.61 E-value=6.1e-08 Score=99.18 Aligned_cols=150 Identities=20% Similarity=0.191 Sum_probs=86.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCcc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLI 364 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli 364 (494)
-..++|++..+..++|+|++||||||||++|++. +.|..|.+.+++..+ ++...+.+.
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 99 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALF 99 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCC
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECCcCChhhCcEEEEecCcccC
Confidence 3578999999999999999999999999999997 456667777665322 122222222
Q ss_pred CCcc--ccccchhhHH----H-HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----e
Q 011082 365 KGAH--ENRGLGHAFL----R-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 433 (494)
Q Consensus 365 ~~a~--~~~~L~~~fl----~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----N 433 (494)
.... ++..++.... . .-++++-++-.+++.+..+......+..+.+.+ .+..+|...|.++++ +
T Consensus 100 ~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRv-----alArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 100 QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRV-----ALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEESTTC
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH-----HHHHHHHcCCCEEEEeCCcc
Confidence 2111 1111111000 0 012223333333443322222223455555544 334567789999998 8
Q ss_pred CCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 434 KIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 434 KiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
.+|.....++.+.|++.. .+.+++.+|+
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 204 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 888877777666666553 1556666654
No 223
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.61 E-value=5.2e-08 Score=95.89 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=81.7
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-------------EEecCCCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIPGL 363 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-------------~l~DtPGl 363 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++...+.+
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 96 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSEL 96 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCC
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCCHHHHhheEEEEecCCcc
Confidence 468999999999999999999999999999997 445566666655211 22222222
Q ss_pred cCCcc--ccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCC------CCEEEEE
Q 011082 364 IKGAH--ENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD------RPSLVVA 432 (494)
Q Consensus 364 i~~a~--~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~------~P~IlVl 432 (494)
..... ++..++... ....+.++-++-.+++.+..+......+..+.+.+... .++.. .|.++++
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iA-----raL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 97 AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLA-----RVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHH-----HHHHHTCCSSCCCEEEEE
T ss_pred CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH-----HHHhcccccCCCCCEEEE
Confidence 11111 110010000 00111122222223333322222223455555554332 34445 8999998
Q ss_pred ----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 ----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 ----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+-+|......+.+.|++.. .+..++.+|+
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtH 206 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH 206 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECS
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEc
Confidence 8888877777777776654 2335565554
No 224
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.61 E-value=1e-07 Score=97.80 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=88.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|+++.+..++|+|++||||||||++|++. +.|..|.+.+++..+ ++...+.+..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----------YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYP 88 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCT
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHhHCcEEEEecCcccCC
Confidence 578999999999999999999999999999997 456667777665321 2222233332
Q ss_pred Ccc--ccccchhhH----HHH-HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF----LRH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f----l~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++... ... -++++-++-.+++.+..+......+..+.+.+ .++.+|...|.++++ +.
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv-----alArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 89 HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV-----AIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEESGGGG
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECcccc
Confidence 111 111111100 000 12233334444444433322233455555544 334567789999998 78
Q ss_pred CCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+|......+.+.|++.. .+.+++.+|+
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 192 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTH 192 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 88877777776666653 2566777764
No 225
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.61 E-value=4e-08 Score=100.57 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=87.3
Q ss_pred eecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCC---CCCCCCCHHHHHHHHHHH
Q 011082 340 TLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIEL 416 (494)
Q Consensus 340 Tl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL 416 (494)
|+......+.+++..+.+|||+|... +...+..+++.++++|+|+|+++... .......+.....++.++
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~-------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGG-------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchh-------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 33333445667778899999999865 33445567789999999999997310 000012344555555555
Q ss_pred HhhhcccCCCCEEEEEeCCCcCC--------------------hHHHHHHHHHH---------cCCCCEEEEEcccCCCH
Q 011082 417 EHHQEGLSDRPSLVVANKIDEDG--------------------AEEVYEELERR---------VQGVPIYPVCAVLEEGV 467 (494)
Q Consensus 417 ~~~~~~l~~~P~IlVlNKiDl~~--------------------~~e~~~~L~~~---------~~~~~ii~ISA~~g~gI 467 (494)
... +.+.+.|+|||+||+|+.. .++..+.+... .....++++||++++||
T Consensus 253 ~~~-~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 253 CNN-KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp HTC-GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred HcC-ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 432 2345789999999999842 22333333322 12456789999999999
Q ss_pred HHHHHHHHHHhcc
Q 011082 468 PELKVGLRMLVNG 480 (494)
Q Consensus 468 ~~L~~~I~~~l~~ 480 (494)
+++++++.+.+..
T Consensus 332 ~~vF~~v~~~i~~ 344 (353)
T 1cip_A 332 QFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 226
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.58 E-value=2.9e-08 Score=97.12 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=38.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
..++|+++.+..++|+|++|||||||++.|++. +.|..|.+.+++
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g 68 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFEN 68 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETT
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECC
Confidence 468899999999999999999999999999997 445566666655
No 227
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.56 E-value=1.3e-07 Score=96.80 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=86.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceE----------------EecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT----------------VADI 360 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~----------------l~Dt 360 (494)
..++|+++.+..++|+|++||||||||+.|++. +.|..|.+.+++..+. +...
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~ 90 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETT
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECcccccccCChhhCCEEEEeCC
Confidence 478999999999999999999999999999997 3455566655543221 1122
Q ss_pred CCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE-
Q 011082 361 PGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 432 (494)
Q Consensus 361 PGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl- 432 (494)
+.+..... ++..++... ...-++++-++-.+++.+..+......+..+.+.+ .++.+|...|.++++
T Consensus 91 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRv-----alAraL~~~P~lLLLD 165 (353)
T 1oxx_K 91 WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV-----ALARALVKDPSLLLLD 165 (353)
T ss_dssp SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEE
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHhCCCEEEEE
Confidence 22222111 111111000 00112223333333443322222223455555544 334567789999999
Q ss_pred ---eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 ---NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 ---NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+.+|.....++.+.|++.. .+.+++.+|+
T Consensus 166 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 199 (353)
T 1oxx_K 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199 (353)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8899888887777776654 2566777765
No 228
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.56 E-value=4e-08 Score=95.74 Aligned_cols=45 Identities=31% Similarity=0.366 Sum_probs=38.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|. |.+.+++
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g 60 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAG 60 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETT
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECC
Confidence 3578999999999999999999999999999997 4566 7776665
No 229
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.55 E-value=1.1e-07 Score=97.43 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=85.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|+++.+..++|+|++||||||||+.|++. +.|..|.+.+++..+ ++...+.+..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-----------YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP 88 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCT
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-----------CCCCccEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 478999999999999999999999999999997 446667666665221 1222222322
Q ss_pred Ccc--ccccchhhH---H-HH-HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF---L-RH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f---l-~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++..+ . .. -++++-++-.+++.+..+......+..+.+.+ .++.+|...|.++++ +.
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv-----alArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 89 HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV-----ALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEESTTTT
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECCccc
Confidence 111 111111000 0 00 01222233333333322222223455555444 334567789999998 78
Q ss_pred CCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+|......+.+.|++.. .+.+++.+|+
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 192 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTH 192 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 88777777666666553 2566777764
No 230
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.55 E-value=9.1e-08 Score=98.70 Aligned_cols=149 Identities=22% Similarity=0.202 Sum_probs=87.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|+++.+..++|+|++|||||||+++|++. +.|..|.+.+++..+ ++...+.++.
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p 88 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-----------CCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCC
Confidence 478999999999999999999999999999997 456677777765321 2223334433
Q ss_pred Ccc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++..+ ...-++++-++-.+.+.+..+......+..+.+.+. ++.+|...|.++++ +-
T Consensus 89 ~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVa-----iArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 89 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA-----IGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHH-----HHHHHHHCCSEEEEESTTTT
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHH-----HHHHHHcCCCEEEEECCCcC
Confidence 211 121111110 001122333333334433222222334555555443 33456678999998 77
Q ss_pred CCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+|.....++.+.|++.. .+.+++.||+
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTH 192 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTH 192 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 88766666666666553 2567777765
No 231
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.53 E-value=6.2e-08 Score=95.24 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=80.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce----------EEecCC-CccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------TVADIP-GLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~----------~l~DtP-Gli~ 365 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++...| .+..
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~ 92 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF 92 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCC
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEECchHHhhhhEEEEeccchhhcC
Confidence 468899999999999999999999999999997 445667766665321 112221 1111
Q ss_pred Ccc--ccccchhhH-HH---HHHhhceeeEEEecC--CCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----e
Q 011082 366 GAH--ENRGLGHAF-LR---HIERTKVLAYVVDLA--SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 433 (494)
Q Consensus 366 ~a~--~~~~L~~~f-l~---~i~~ad~ll~VvD~s--~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----N 433 (494)
... ++..+.... .. ..++++-++-.+++. +..+......+..+.+.+ .+..++...|.|+++ +
T Consensus 93 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv-----~lAraL~~~p~lllLDEPts 167 (266)
T 2yz2_A 93 AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV-----AIASVIVHEPDILILDEPLV 167 (266)
T ss_dssp CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEESTTT
T ss_pred CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCccc
Confidence 000 110000000 00 001111112222222 111111122444444444 333466789999998 8
Q ss_pred CCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 434 KIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 434 KiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
.+|......+.+.|.+.. .+..++.+|+
T Consensus 168 ~LD~~~~~~l~~~l~~l~~~g~tii~vtH 196 (266)
T 2yz2_A 168 GLDREGKTDLLRIVEKWKTLGKTVILISH 196 (266)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 888877777777776654 3445555553
No 232
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.50 E-value=2e-07 Score=95.98 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=85.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEE-----------------ec
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITV-----------------AD 359 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l-----------------~D 359 (494)
..++|++..+..++|+|++||||||||++|++. +.|..|.+.+++..+.- ..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q 88 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----------EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-----------CCCCccEEEECCEECccccccccCCHhHCCEEEEeC
Confidence 478999999999999999999999999999997 44566666666543321 11
Q ss_pred CCCccCCcc--ccccchhhH----HHH-HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 360 IPGLIKGAH--ENRGLGHAF----LRH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 360 tPGli~~a~--~~~~L~~~f----l~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
.+.++.... ++..++... ... -++++-++-.+++.+..+......+..+.+.+. +..+|...|.++++
T Consensus 89 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-----lArAL~~~P~lLLL 163 (372)
T 1g29_1 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA-----LGRAIVRKPQVFLM 163 (372)
T ss_dssp CCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH-----HHHHHHTCCSEEEE
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHH-----HHHHHhcCCCEEEE
Confidence 122221111 111111000 000 112233333344433222222234555555443 33456688999998
Q ss_pred ----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 ----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 ----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+-+|......+.+.|++.. .+.+++.+|+
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 198 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 7888777777666666543 2566777764
No 233
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.48 E-value=1.7e-07 Score=90.76 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|+++.+..++|+|++|||||||++.|++.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999999999999997
No 234
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.48 E-value=1.5e-07 Score=97.02 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=80.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|+++.+..++|+|++||||||||++|++. +.|..|.+.+++..+ ++...+.+..
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 96 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGGTEEEEEC------
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 578999999999999999999999999999997 445666666655221 1111122221
Q ss_pred Ccc--ccccchhhH----HHH-HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF----LRH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f----l~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++..+ ... -++++-++-.+++.+..+......+..+.+.+ .++.+|...|.++++ +.
T Consensus 97 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv-----alArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 97 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV-----AVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH-----HHHHHHTTCCSEEEEESTTTT
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCCcc
Confidence 111 111111000 000 11222222223332221211222333333333 233456789999998 78
Q ss_pred CCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+|......+.+.|++.. .+.+++.+|+
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 200 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 88777777666666553 2566777765
No 235
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.47 E-value=1.2e-07 Score=97.44 Aligned_cols=128 Identities=9% Similarity=0.063 Sum_probs=79.4
Q ss_pred eeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCC---CCCCCCHHHHHHHHHHHHhhhc
Q 011082 345 LGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDG---RKGIKPWKQLRDLIIELEHHQE 421 (494)
Q Consensus 345 ~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~---~~~~~~~~~~~~l~~eL~~~~~ 421 (494)
...+.+++..+.+|||+|... +...+..+++.++++|+|+|+++.... ......+.....++..+... +
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~-~ 264 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRS-------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-R 264 (362)
T ss_dssp EEEEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-G
T ss_pred EEEeeeCCeEEEEEeccchhh-------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc-h
Confidence 345666778899999999854 223344556789999999999972100 00012344455555555432 2
Q ss_pred ccCCCCEEEEEeCCCcCC---------------------hHHHHHHHHHHc---------CCCCEEEEEcccCCCHHHHH
Q 011082 422 GLSDRPSLVVANKIDEDG---------------------AEEVYEELERRV---------QGVPIYPVCAVLEEGVPELK 471 (494)
Q Consensus 422 ~l~~~P~IlVlNKiDl~~---------------------~~e~~~~L~~~~---------~~~~ii~ISA~~g~gI~~L~ 471 (494)
.+.+.|+|+|+||+|+.. .++..+.+...+ ....++++||++++||++++
T Consensus 265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 345789999999999852 122222222111 13567899999999999999
Q ss_pred HHHHHHhcc
Q 011082 472 VGLRMLVNG 480 (494)
Q Consensus 472 ~~I~~~l~~ 480 (494)
+.+.+.+..
T Consensus 345 ~~v~~~i~~ 353 (362)
T 1zcb_A 345 RDVKDTILH 353 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999877643
No 236
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.47 E-value=4.1e-07 Score=89.68 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=81.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPGL 363 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPGl 363 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.. + ++...|.+
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l 104 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLL 104 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCC
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcc
Confidence 468899999999999999999999999999997 44556666665521 1 22233333
Q ss_pred cCC-ccccccch-------hhHHHHHHhh--ceeeEEE--ecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 364 IKG-AHENRGLG-------HAFLRHIERT--KVLAYVV--DLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 364 i~~-a~~~~~L~-------~~fl~~i~~a--d~ll~Vv--D~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
... ..++..++ ......+... +-++.-+ .+...........+..+.+.+.. ..+|...|.|++
T Consensus 105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~l-----AraL~~~p~lll 179 (271)
T 2ixe_A 105 FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVAL-----ARALIRKPRLLI 179 (271)
T ss_dssp CSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHH-----HHHHTTCCSEEE
T ss_pred ccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHH-----HHHHhcCCCEEE
Confidence 221 00111010 0010111111 1111101 11111111112345555555433 346678999999
Q ss_pred E----eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+ +-+|......+.+.|.+... +..++.+|.
T Consensus 180 LDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred EECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 8 78887777777777776543 455655553
No 237
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.46 E-value=1.4e-07 Score=93.54 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=38.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g 82 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFG 82 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECC
Confidence 478999999999999999999999999999997 445566666655
No 238
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.46 E-value=6.8e-07 Score=86.84 Aligned_cols=148 Identities=17% Similarity=0.243 Sum_probs=81.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPGL 363 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPGl 363 (494)
..++|+++.+..++|+|++|||||||++.|++. +.|..|.+.+++.. + ++.+.|.+
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l 94 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL 94 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcc
Confidence 478999999999999999999999999999997 44556666665521 1 22233333
Q ss_pred cCC-ccccccchh------hHHHHHHhhceeeEEEec-----CCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 364 IKG-AHENRGLGH------AFLRHIERTKVLAYVVDL-----ASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 364 i~~-a~~~~~L~~------~fl~~i~~ad~ll~VvD~-----s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
... ..++..++. .....++...+ -.+++. ...........+..+.+.+.. +.++...|.+++
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i-----AraL~~~p~lll 168 (247)
T 2ff7_A 95 LNRSIIDNISLANPGMSVEKVIYAAKLAGA-HDFISELREGYNTIVGEQGAGLSGGQRQRIAI-----ARALVNNPKILI 168 (247)
T ss_dssp TTSBHHHHHTTTCTTCCHHHHHHHHHHHTC-HHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH-----HHHHTTCCSEEE
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHhCh-HHHHHhCcchhhhhhhCCCCCCCHHHHHHHHH-----HHHHhcCCCEEE
Confidence 221 001111110 01111111111 000110 000011112345555555433 345678999999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+ +-+|......+.+.|.+...+..++.+|.
T Consensus 169 LDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH 202 (247)
T 2ff7_A 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAH 202 (247)
T ss_dssp ECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECS
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 8 78887777777777776544555665554
No 239
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.45 E-value=1.3e-07 Score=92.83 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=79.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|++. +..++|+|++|||||||++.|++. + |..|.+.+++..+ ++...|.+ .
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~ 87 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-G 87 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-T
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-C
Confidence 46889999 999999999999999999999997 5 6778887776322 11222222 1
Q ss_pred Ccc--ccccchhhHHH-HHHhhceeeEEEecC-CCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCc
Q 011082 366 GAH--ENRGLGHAFLR-HIERTKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDE 437 (494)
Q Consensus 366 ~a~--~~~~L~~~fl~-~i~~ad~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl 437 (494)
.. ++..+...+.. ..+.++-++-.+++. +..+......+..+.+.+.. +.++...|.++++ +.+|.
T Consensus 88 -~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~l-----AraL~~~p~lllLDEPts~LD~ 161 (263)
T 2pjz_A 88 -VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRT-----SLALASQPEIVGLDEPFENVDA 161 (263)
T ss_dssp -SBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHH-----HHHHHTCCSEEEEECTTTTCCH
T ss_pred -CcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH-----HHHHHhCCCEEEEECCccccCH
Confidence 01 11000000000 001111122222332 21111122344555554433 3355678999998 88888
Q ss_pred CChHHHHHHHHHHcCCCCEEEEEc
Q 011082 438 DGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 438 ~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
.....+.+.|.+.. . .++.+|+
T Consensus 162 ~~~~~l~~~L~~~~-~-tviivtH 183 (263)
T 2pjz_A 162 ARRHVISRYIKEYG-K-EGILVTH 183 (263)
T ss_dssp HHHHHHHHHHHHSC-S-EEEEEES
T ss_pred HHHHHHHHHHHHhc-C-cEEEEEc
Confidence 77777777777654 3 5555553
No 240
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.45 E-value=1.3e-07 Score=93.76 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=37.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeecCcceEEecCCCccCC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKG 366 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~ 366 (494)
..+|+++|.||+|||||+|+|++.+ ..+++.+++|.+... +.+ +..+.++||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCC
Confidence 3479999999999999999999986 567889999987753 333 457999999999864
No 241
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=3.8e-07 Score=91.10 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=71.9
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
..+.+||| ..+... +. ..++..+|++|+|+|++++ ......+..++.++.. .+.|.|+|+
T Consensus 63 ~~~~iwD~--qer~~~----l~---~~~~~~ad~vilV~D~~~~------~~s~~~l~~~l~~~~~-----~~~piilv~ 122 (301)
T 1u0l_A 63 GSGVIENV--LHRKNL----LT---KPHVANVDQVILVVTVKMP------ETSTYIIDKFLVLAEK-----NELETVMVI 122 (301)
T ss_dssp SSEEEEEE--CCCSCE----ET---TTTEESCCEEEEEECSSTT------CCCHHHHHHHHHHHHH-----TTCEEEEEE
T ss_pred CeEEEEEE--ccccce----ee---ccccccCCEEEEEEeCCCC------CCCHHHHHHHHHHHHH-----CCCCEEEEE
Confidence 37899999 333211 22 2356789999999999873 1245666777666543 368999999
Q ss_pred eCCCcCChHHH--HHHHHHHcCC-CCEEEEEcccCCCHHHHHHHHH
Q 011082 433 NKIDEDGAEEV--YEELERRVQG-VPIYPVCAVLEEGVPELKVGLR 475 (494)
Q Consensus 433 NKiDl~~~~e~--~~~L~~~~~~-~~ii~ISA~~g~gI~~L~~~I~ 475 (494)
||+|+.+..+. .+.+.+.+.. .+++++||+++.|+++++..+.
T Consensus 123 NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 123 NKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred eHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99999875432 2333333322 6899999999999999998764
No 242
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.41 E-value=4.6e-07 Score=88.17 Aligned_cols=151 Identities=17% Similarity=0.065 Sum_probs=79.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce--------------EEecCCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI--------------TVADIPG 362 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~--------------~l~DtPG 362 (494)
..++|++..+..++|+|++|||||||++.|++.. .+.|..|.+.+++..+ ++.+.|.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~---------~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 90 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP---------EYTVERGEILLDGENILELSPDERARKGLFLAFQYPV 90 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT---------TCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---------CCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc
Confidence 4688999999999999999999999999999951 0245667777765321 1122233
Q ss_pred ccCCcc--ccccchhh-H-------HHHHHhhceeeEEEecC-CCCCCCCCC-CCHHHHHHHHHHHHhhhcccCCCCEEE
Q 011082 363 LIKGAH--ENRGLGHA-F-------LRHIERTKVLAYVVDLA-SGLDGRKGI-KPWKQLRDLIIELEHHQEGLSDRPSLV 430 (494)
Q Consensus 363 li~~a~--~~~~L~~~-f-------l~~i~~ad~ll~VvD~s-~~~~~~~~~-~~~~~~~~l~~eL~~~~~~l~~~P~Il 430 (494)
+..... ++..+... + ....+.++-++-.+++. +..+..... .+..+.+.+. +..++...|.++
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~-----iAraL~~~p~ll 165 (250)
T 2d2e_A 91 EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE-----ILQLLVLEPTYA 165 (250)
T ss_dssp -CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH-----HHHHHHHCCSEE
T ss_pred cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH-----HHHHHHcCCCEE
Confidence 222111 11000000 0 00011122222222331 111111122 3444444443 333455789999
Q ss_pred EE----eCCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 431 VA----NKIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 431 Vl----NKiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
++ +-+|......+.+.|.+.. .+..++.+|+
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 98 8888877777777777764 3445555554
No 243
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.40 E-value=1.2e-07 Score=91.16 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=46.0
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCcc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI 364 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli 364 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.--++.+.|.+.
T Consensus 24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~i~~v~q~~~~~ 81 (229)
T 2pze_A 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECSCEEEECSSCCCC
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECCEEEEEecCCccc
Confidence 3578999999999999999999999999999997 567778888876433444445443
No 244
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.39 E-value=8.7e-07 Score=87.08 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=82.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc-------------e-EEecCCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-------------I-TVADIPG 362 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~-------------~-~l~DtPG 362 (494)
..++|++..+..++|+|++|||||||++.|++... ..|..|.+.+++.. + ++.+.|.
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~ 107 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV 107 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcc
Confidence 46889999999999999999999999999999610 13556777666521 1 2233343
Q ss_pred ccCCcc--ccccchhh-H----------HHH-HHhhceeeEEEecCC-CCCCCCC-CCCHHHHHHHHHHHHhhhcccCCC
Q 011082 363 LIKGAH--ENRGLGHA-F----------LRH-IERTKVLAYVVDLAS-GLDGRKG-IKPWKQLRDLIIELEHHQEGLSDR 426 (494)
Q Consensus 363 li~~a~--~~~~L~~~-f----------l~~-i~~ad~ll~VvD~s~-~~~~~~~-~~~~~~~~~l~~eL~~~~~~l~~~ 426 (494)
+..... ++..+... . ... .+.++-++-.+++.. ..+.... ..+..+.+.+.. +.++...
T Consensus 108 l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i-----AraL~~~ 182 (267)
T 2zu0_C 108 EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI-----LQMAVLE 182 (267)
T ss_dssp CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH-----HHHHHHC
T ss_pred ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH-----HHHHHhC
Confidence 332211 00000000 0 000 112222222233321 1111112 255566555533 3345578
Q ss_pred CEEEEE----eCCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 427 PSLVVA----NKIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 427 P~IlVl----NKiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
|.|+++ +-+|......+.+.|.+.. .+..++.+|+
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 999998 8888877777777776654 2445555543
No 245
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.38 E-value=1e-07 Score=95.71 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=83.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-------------EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-------------~l~DtPG 362 (494)
-..++|+++.+..|+|||++|||||||++.|++. +.|..|.+.+++..+ ++...|-
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~ 138 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV 138 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc
Confidence 3578999999999999999999999999999997 556677777766221 2222233
Q ss_pred ccCC-ccccccchh------hHHHHHHhhceeeEEEecCCC----CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 363 LIKG-AHENRGLGH------AFLRHIERTKVLAYVVDLASG----LDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 363 li~~-a~~~~~L~~------~fl~~i~~ad~ll~VvD~s~~----~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
++.. ..++..++. .....++.+.+.-++-..... ........+..+.+.+.. ++++...|.|++
T Consensus 139 lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvai-----ARAL~~~p~iLl 213 (306)
T 3nh6_A 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI-----ARTILKAPGIIL 213 (306)
T ss_dssp CCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHH-----HHHHHHCCSEEE
T ss_pred cCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHH-----HHHHHhCCCEEE
Confidence 3221 011111111 111222222211111000000 000011345566555533 334557888998
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+ +-+|......+.+.|.+...+..+|.||+
T Consensus 214 LDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH 247 (306)
T 3nh6_A 214 LDEATSALDTSNERAIQASLAKVCANRTTIVVAH 247 (306)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECC
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEc
Confidence 8 77887777777777777665656666654
No 246
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.37 E-value=4.6e-07 Score=98.48 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=48.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEee-------cCcceEEecCCCccCC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF-------DDIQITVADIPGLIKG 366 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~-------~~~~~~l~DtPGli~~ 366 (494)
..+|+|+|.||+|||||||+|++....+ +++++|.+.+.|...+ .+..++++||||+...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3579999999999999999999986444 6777777777776543 3478999999999863
No 247
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.36 E-value=6.1e-07 Score=86.60 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=41.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~ 353 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~ 67 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGS 67 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSC
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE
Confidence 3578999999999999999999999999999997 5677888888763
No 248
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.36 E-value=8.5e-07 Score=93.09 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=79.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc------CCCCc-c-c------------------ccceee----cce------eeEEe
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR------AKPAV-G-H------------------YSFTTL----RPN------LGNMN 349 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~------~~~~i-~-~------------------~~ftTl----~p~------~g~v~ 349 (494)
...|+++|++|+||||++..|+. .++.+ . + .++... +|. .....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999873 22211 1 1 000000 000 00000
Q ss_pred ecCcceEEecCCCccCCccccccchhhH--HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC
Q 011082 350 FDDIQITVADIPGLIKGAHENRGLGHAF--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 427 (494)
Q Consensus 350 ~~~~~~~l~DtPGli~~a~~~~~L~~~f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 427 (494)
..+..++++||||...... .+...+ +..+..+|.+++|+|+... .+.... ...|.+. -.+
T Consensus 180 ~~~~DvVIIDTaGrl~~d~---~lm~el~~i~~~~~pd~vlLVvDA~~g------q~a~~~-------a~~f~~~--~~i 241 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDK---ALIEEMKQISNVIHPHEVILVIDGTIG------QQAYNQ-------ALAFKEA--TPI 241 (443)
T ss_dssp HTTCSEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGG------GGHHHH-------HHHHHHS--CTT
T ss_pred hCCCCEEEEECCCcccchH---HHHHHHHHHHHhhcCceEEEEEeCCCc------hhHHHH-------HHHHHhh--CCC
Confidence 1236789999999754211 122211 1223456889999998752 122221 1233322 256
Q ss_pred EEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHH
Q 011082 428 SLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 428 ~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~ 469 (494)
..+|+||+|........-.+... .+.|+.+++. |+++++
T Consensus 242 ~gVIlTKlD~~~~gG~~ls~~~~-~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 242 GSIIVTKLDGSAKGGGALSAVAA-TGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp EEEEEECCSSCSSHHHHHHHHHT-TCCCEEEEEC--SSSTTC
T ss_pred eEEEEECCCCcccccHHHHHHHH-HCCCEEEEEc--CCChHH
Confidence 77899999998654333333333 3678888885 666543
No 249
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.32 E-value=2.9e-07 Score=96.62 Aligned_cols=153 Identities=22% Similarity=0.324 Sum_probs=81.9
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC------CCCc-c-c---------------------ccc--eeecce-e---eEEee
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA------KPAV-G-H---------------------YSF--TTLRPN-L---GNMNF 350 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~------~~~i-~-~---------------------~~f--tTl~p~-~---g~v~~ 350 (494)
...|+++|++|+||||+++.|+.. ++.+ . + ++. +|.+|. . +.-.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999763 2211 0 0 000 222221 0 10012
Q ss_pred cCcceEEecCCCccCCccccccchhhH--HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCC-C
Q 011082 351 DDIQITVADIPGLIKGAHENRGLGHAF--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR-P 427 (494)
Q Consensus 351 ~~~~~~l~DtPGli~~a~~~~~L~~~f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~-P 427 (494)
.+..++++||||...... .+.... +..+..+|.+++|+|+... . +.. ..+..+.. .. |
T Consensus 179 ~~~D~vIIDT~G~~~~~~---~l~~~l~~i~~~~~~d~vllVvda~~g------~---~~~----~~~~~~~~---~~~~ 239 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEK---GLLEEMKQIKEITNPDEIILVIDGTIG------Q---QAG----IQAKAFKE---AVGE 239 (432)
T ss_dssp SSCSEEEEECCCSCSSHH---HHHHHHHHTTSSSCCSEEEEEEEGGGG------G---GHH----HHHHHHHT---TSCS
T ss_pred hCCCEEEEcCCCCccccH---HHHHHHHHHHHHhcCcceeEEeecccc------H---HHH----HHHHHHhh---cccC
Confidence 457899999999865211 111111 0111247899999998652 1 111 12223322 23 4
Q ss_pred -EEEEEeCCCcCChH-HHHHHHHHHcCCCCEEE------------------EEcccCCC-HHHHHHHHHHHhc
Q 011082 428 -SLVVANKIDEDGAE-EVYEELERRVQGVPIYP------------------VCAVLEEG-VPELKVGLRMLVN 479 (494)
Q Consensus 428 -~IlVlNKiDl~~~~-e~~~~L~~~~~~~~ii~------------------ISA~~g~g-I~~L~~~I~~~l~ 479 (494)
..+|+||+|..... ..+. +.... +.++.+ +|+..|.| +..|++.+.+.+.
T Consensus 240 i~gvVlnK~D~~~~~g~~l~-~~~~~-~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 240 IGSIIVTKLDGSAKGGGALS-AVAET-KAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp CEEEEEECSSSCSTTHHHHH-HHHHS-SCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred CeEEEEeCCCCccchHHHHH-HHHHH-CCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 88999999986532 2333 33333 334444 45666666 6665555544443
No 250
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.32 E-value=3.6e-07 Score=92.92 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=87.1
Q ss_pred eecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCC---CCCCCCCHHHHHHHHHHH
Q 011082 340 TLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIEL 416 (494)
Q Consensus 340 Tl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL 416 (494)
|.......+.+.+..+.+|||.|... +...+..+++.++++|+|+|+++... .......+.....++.++
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 33344445666778999999999854 34455666788999999999984210 000123444444555554
Q ss_pred HhhhcccCCCCEEEEEeCCCcCCh--------------------HHHHHHHHHHc-------------------------
Q 011082 417 EHHQEGLSDRPSLVVANKIDEDGA--------------------EEVYEELERRV------------------------- 451 (494)
Q Consensus 417 ~~~~~~l~~~P~IlVlNKiDl~~~--------------------~e~~~~L~~~~------------------------- 451 (494)
... +.+.+.|+|+|+||+|+... ++..+.+.+.+
T Consensus 221 ~~~-~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (340)
T 4fid_A 221 MTN-EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVN 299 (340)
T ss_dssp HHC-GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------
T ss_pred hhh-hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccC
Confidence 332 34567899999999998642 23333444443
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
....++++||++..+|+.+++.+.+.+-.
T Consensus 300 ~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 300 EKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 12456889999999999999998877654
No 251
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.31 E-value=6.3e-07 Score=93.08 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=83.1
Q ss_pred eEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCC---CCCCCCCHHHHHHHHHHHHhhhcc
Q 011082 346 GNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHHQEG 422 (494)
Q Consensus 346 g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~~~~~~ 422 (494)
..+.+++..+.+|||.|... +...+..+++.++++|+|+|+++... .......+.....++.++... +.
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~-------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~-~~ 281 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRD-------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN-RW 281 (402)
T ss_dssp EEEEETTEEEEEEEECCSGG-------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-TT
T ss_pred EEeecCCccceecccchhhh-------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc-cc
Confidence 34566778899999999865 33345566788999999999997210 001124455666666665432 23
Q ss_pred cCCCCEEEEEeCCCcCChHH-----------------------------------HHHHH----HHHc-------CCCCE
Q 011082 423 LSDRPSLVVANKIDEDGAEE-----------------------------------VYEEL----ERRV-------QGVPI 456 (494)
Q Consensus 423 l~~~P~IlVlNKiDl~~~~e-----------------------------------~~~~L----~~~~-------~~~~i 456 (494)
+.+.|+|||+||+|+..... ....+ .+.. ....+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 45789999999999843211 11111 1111 12346
Q ss_pred EEEEcccCCCHHHHHHHHHHHhcc
Q 011082 457 YPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+++||++++||+++++.+.+.+..
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHHHH
Confidence 789999999999999998877643
No 252
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.30 E-value=4.5e-07 Score=92.76 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=76.8
Q ss_pred CcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCC---CCCCCCCHHHHHHHHHHHHhhhcccCCCCE
Q 011082 352 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHHQEGLSDRPS 428 (494)
Q Consensus 352 ~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 428 (494)
...+.+|||+|... +...+..+++.++++|+|+|+++... .......+.....++.++... ..+.+.|+
T Consensus 182 ~v~l~iwDtaGQe~-------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~pi 253 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSF 253 (354)
T ss_dssp --EEEEEEECCSTT-------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEE
T ss_pred ceeeEEEECCCchh-------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeE
Confidence 36789999999865 33344556788999999999983110 000124455555565555432 22457899
Q ss_pred EEEEeCCCcCCh--------------------------HHHHHHHHHHc--------------CCCCEEEEEcccCCCHH
Q 011082 429 LVVANKIDEDGA--------------------------EEVYEELERRV--------------QGVPIYPVCAVLEEGVP 468 (494)
Q Consensus 429 IlVlNKiDl~~~--------------------------~e~~~~L~~~~--------------~~~~ii~ISA~~g~gI~ 468 (494)
|||+||+|+... ++..+.+.+.+ ....++++||++++||+
T Consensus 254 iLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~ 333 (354)
T 2xtz_A 254 MLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVK 333 (354)
T ss_dssp EEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHH
T ss_pred EEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHH
Confidence 999999998421 12222222211 11235899999999999
Q ss_pred HHHHHHHHHhcc
Q 011082 469 ELKVGLRMLVNG 480 (494)
Q Consensus 469 ~L~~~I~~~l~~ 480 (494)
++++.+.+.+..
T Consensus 334 ~vF~~v~~~I~~ 345 (354)
T 2xtz_A 334 KTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877643
No 253
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.28 E-value=1.7e-06 Score=94.60 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=22.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
+.|+|||++|||||||+++|+|..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 469999999999999999999973
No 254
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.26 E-value=1.6e-06 Score=85.89 Aligned_cols=102 Identities=14% Similarity=0.278 Sum_probs=68.9
Q ss_pred EecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 011082 357 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 436 (494)
Q Consensus 357 l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiD 436 (494)
+-+.||+.. ....+++++++.+|++++|+|+.++... .. ..+. .+ +.++|.++|+||+|
T Consensus 3 i~w~PGhm~------ka~~~~~~~l~~aDvVl~VvDAr~p~~~----~~-~~l~-------~~---l~~kp~ilVlNK~D 61 (282)
T 1puj_A 3 IQWFPGHMA------KARREVTEKLKLIDIVYELVDARIPMSS----RN-PMIE-------DI---LKNKPRIMLLNKAD 61 (282)
T ss_dssp ------CTT------HHHHHHHHHGGGCSEEEEEEETTSTTTT----SC-HHHH-------HH---CSSSCEEEEEECGG
T ss_pred CcCCchHHH------HHHHHHHHHHhhCCEEEEEEeCCCCCcc----CC-HHHH-------HH---HCCCCEEEEEECcc
Confidence 445788765 2445788899999999999999875321 11 1222 22 24799999999999
Q ss_pred cCChHHHHHHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 437 EDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 437 l~~~~e~~~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+.+... .+.+.+.+ .+.+++++||+++.|+++|++.+.+++..
T Consensus 62 L~~~~~-~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 62 KADAAV-TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp GSCHHH-HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCHHH-HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 998543 33333333 35689999999999999999999887753
No 255
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.26 E-value=8.8e-07 Score=89.59 Aligned_cols=130 Identities=10% Similarity=0.073 Sum_probs=84.4
Q ss_pred eeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCC---CCCCCCCHHHHHHHHHHHHhhh
Q 011082 344 NLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHHQ 420 (494)
Q Consensus 344 ~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~~~~ 420 (494)
....+.+++..+.+|||.|... ....+..+++.++++|+|+|+++... .......+.....++.++...
T Consensus 158 ~~~~~~~~~v~l~iwDtgGQe~-------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~- 229 (327)
T 3ohm_A 158 IEYPFDLQSVIFRMVDVGGQRS-------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY- 229 (327)
T ss_dssp EEEEEEETTEEEEEEEECCSHH-------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS-
T ss_pred EEEEEEeeceeeEEEEcCCchh-------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh-
Confidence 3345566778899999999864 33345566788999999999873110 000123344444444444332
Q ss_pred cccCCCCEEEEEeCCCcCCh---------------------HHHHHHHHHHc--------CCCCEEEEEcccCCCHHHHH
Q 011082 421 EGLSDRPSLVVANKIDEDGA---------------------EEVYEELERRV--------QGVPIYPVCAVLEEGVPELK 471 (494)
Q Consensus 421 ~~l~~~P~IlVlNKiDl~~~---------------------~e~~~~L~~~~--------~~~~ii~ISA~~g~gI~~L~ 471 (494)
+.+.+.|+|+++||+|+... ++..+.+.+.+ ....++++||+++.||+.++
T Consensus 230 ~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF 309 (327)
T 3ohm_A 230 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVF 309 (327)
T ss_dssp GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHH
Confidence 34567899999999998532 23333333322 12356789999999999999
Q ss_pred HHHHHHhccc
Q 011082 472 VGLRMLVNGE 481 (494)
Q Consensus 472 ~~I~~~l~~~ 481 (494)
+.+.+.+-+.
T Consensus 310 ~~v~~~Il~~ 319 (327)
T 3ohm_A 310 AAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998877554
No 256
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.25 E-value=7.6e-07 Score=94.48 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|.+..+..|+|||++|||||||++.|++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 456777888899999999999999999999864
No 257
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.24 E-value=2.3e-06 Score=83.74 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999999999999999999997
No 258
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.21 E-value=3.2e-07 Score=91.38 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=44.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.--++...|.+
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~i~~v~Q~~~l 110 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRISFCSQNSWI 110 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCSCEEEECSSCCC
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEEEEEeCCCcc
Confidence 3578999999999999999999999999999997 55777888777632333344443
No 259
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.20 E-value=1.8e-06 Score=90.50 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=77.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc------CCCCcc--------------------cccceee----cce------eeEEe
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR------AKPAVG--------------------HYSFTTL----RPN------LGNMN 349 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~------~~~~i~--------------------~~~ftTl----~p~------~g~v~ 349 (494)
...|+++|++||||||++..|+. .++.+. ..++.+. +|. .....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 45789999999999999999973 222110 0111100 000 00001
Q ss_pred ecCcceEEecCCCccCCccccccchhhHHH--HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC
Q 011082 350 FDDIQITVADIPGLIKGAHENRGLGHAFLR--HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 427 (494)
Q Consensus 350 ~~~~~~~l~DtPGli~~a~~~~~L~~~fl~--~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 427 (494)
..+..++++||||..... ....+...+.. .....+.+++|+|+... .+.....+ .|... -.+
T Consensus 177 ~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~g------q~a~~~a~-------~f~~~--~~~ 240 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASIG------QKAYDLAS-------RFHQA--SPI 240 (433)
T ss_dssp TTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGGG------GGGHHHHH-------HHHHH--CSS
T ss_pred hcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCccc------hHHHHHHH-------HHhcc--cCC
Confidence 124678999999964300 11112222211 12234889999998752 22222222 22221 257
Q ss_pred EEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHH
Q 011082 428 SLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVP 468 (494)
Q Consensus 428 ~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~ 468 (494)
..+|+||+|........-.+.... +.|+.+++. |++++
T Consensus 241 ~gVIlTKlD~~a~~G~als~~~~~-g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 241 GSVIITKMDGTAKGGGALSAVVAT-GATIKFIGT--GEKID 278 (433)
T ss_dssp EEEEEECGGGCSCHHHHHHHHHHH-TCEEEEEEC--CSSSS
T ss_pred cEEEEecccccccchHHHHHHHHH-CCCEEEEEC--CCChH
Confidence 889999999876533222222332 678888885 76653
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.19 E-value=1.5e-06 Score=88.04 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=77.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC-Ccccccceeecc--------------eee--EEe------------------
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRP--------------NLG--NMN------------------ 349 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p--------------~~g--~v~------------------ 349 (494)
.+..|+|+|++|||||||++.|++.-. .-....+...+. ..+ .+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 456899999999999999999986411 111111111111 011 111
Q ss_pred -ecCcceEEecCCCccCCccccccchhhHH--HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCC
Q 011082 350 -FDDIQITVADIPGLIKGAHENRGLGHAFL--RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR 426 (494)
Q Consensus 350 -~~~~~~~l~DtPGli~~a~~~~~L~~~fl--~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~ 426 (494)
..+..+.++||+|...... .+...+. ..+-..|..++++|.... . .+...+..+... ..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral~~de~llvLDa~t~------~-------~~~~~~~~~~~~--~~ 269 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNR---NLMDEMKKIARVTKPNLVIFVGDALAG------N-------AIVEQARQFNEA--VK 269 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHHCCSEEEEEEEGGGT------T-------HHHHHHHHHHHH--SC
T ss_pred HhccchhhHHhhccchhHHH---HHHHHHHHHHHHhcCCCCEEEEecHHH------H-------HHHHHHHHHHHh--cC
Confidence 0124567899999754221 1222221 112235788899997651 1 122222223221 24
Q ss_pred CEEEEEeCCCcCCh-HHHHHHHHHHcCCCCEEEEEcccCCCHHHH
Q 011082 427 PSLVVANKIDEDGA-EEVYEELERRVQGVPIYPVCAVLEEGVPEL 470 (494)
Q Consensus 427 P~IlVlNKiDl~~~-~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L 470 (494)
..++++||+|.... -..+..+... +.++.+++ +|+++++|
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~--~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVI--DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHH--TCCEEEEE--CSSSTTCE
T ss_pred CCEEEEeCcCCccchhHHHHHHHHH--CCCEEEEe--CCCCcccc
Confidence 56888999997543 2333333332 57888888 78877553
No 261
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.17 E-value=7.2e-07 Score=92.38 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=31.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|+++.+..++|+|++||||||||++|++.
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3578999999999999999999999999999996
No 262
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.16 E-value=1.2e-06 Score=85.92 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=38.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKG 366 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~ 366 (494)
.+|+++|.||+|||||+|+|++... .+++.+++|..... +.+ +..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe-CCCEEEEECCCcccC
Confidence 4799999999999999999998764 56778888876542 333 357899999999864
No 263
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.13 E-value=4.7e-06 Score=83.22 Aligned_cols=85 Identities=24% Similarity=0.171 Sum_probs=61.6
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH--HHHHHHHHc--CCCC
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRV--QGVP 455 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e--~~~~L~~~~--~~~~ 455 (494)
.+..+|.+++|+|++++ ..+...+..++..+.. .+.|.|+|+||+|+.+..+ ..+.+.+.+ .+.+
T Consensus 76 ~~~naD~vliV~d~~~p------~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~ 144 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMP------EFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD 144 (302)
T ss_dssp EEESCCEEEEEECSTTT------TCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHhcCEEEEEEECCCC------CCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe
Confidence 46789999999999873 1245566666665543 3789999999999987542 123333322 3578
Q ss_pred EEEEEcccCCCHHHHHHHHH
Q 011082 456 IYPVCAVLEEGVPELKVGLR 475 (494)
Q Consensus 456 ii~ISA~~g~gI~~L~~~I~ 475 (494)
++++||+++.|+++|++.+.
T Consensus 145 ~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 145 VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEECCTTTCTTHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHhhcc
Confidence 99999999999999988764
No 264
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.12 E-value=3.3e-06 Score=91.86 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=37.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
..++|+++.+..++|+|++|||||||++.|++. .+|+.|.+.+++
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g 404 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDG 404 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECC
Confidence 468999999999999999999999999999997 345555555554
No 265
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.11 E-value=9.3e-07 Score=104.78 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=89.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPGL 363 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPGl 363 (494)
+.++|+++.+.+|||||++|||||||++.|.+. .+|..|.+.+++.+ + ++..-|-+
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe
Confidence 689999999999999999999999999999997 56777777777621 1 11122222
Q ss_pred cCC-cccccc-------c-hhhHHHHHHhhceeeEEEecCCCCCCCC----CCCCHHHHHHHHHHHHhhhcccCCCCEEE
Q 011082 364 IKG-AHENRG-------L-GHAFLRHIERTKVLAYVVDLASGLDGRK----GIKPWKQLRDLIIELEHHQEGLSDRPSLV 430 (494)
Q Consensus 364 i~~-a~~~~~-------L-~~~fl~~i~~ad~ll~VvD~s~~~~~~~----~~~~~~~~~~l~~eL~~~~~~l~~~P~Il 430 (494)
..+ ..+|.. . ..+..+.++.+.+-=++-...+..+... ...+..+.+.+ .+++++..+|.|+
T Consensus 1165 F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri-----aiARAllr~~~IL 1239 (1321)
T 4f4c_A 1165 FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI-----AIARALVRNPKIL 1239 (1321)
T ss_dssp CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH-----HHHHHHHSCCSEE
T ss_pred eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH-----HHHHHHHhCCCEE
Confidence 211 011111 1 1123444455443222222222221111 12455555544 3345666889999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCCEEEEEcc
Q 011082 431 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 431 Vl----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA~ 462 (494)
++ .-+|......+.+.|.+.+.+.+++.|++.
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 98 667876666667777776677777777654
No 266
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.09 E-value=2.2e-06 Score=93.20 Aligned_cols=150 Identities=22% Similarity=0.281 Sum_probs=84.2
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPG 362 (494)
-..++|+++.+..++|+|++|||||||++.|++. ++|+.|.+.+++.. + .+...|.
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 425 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc
Confidence 3579999999999999999999999999999997 56777888777632 1 2223343
Q ss_pred ccCC-ccccccch------hhHHHHHHhhceeeEEEecCCCCC----CCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 363 LIKG-AHENRGLG------HAFLRHIERTKVLAYVVDLASGLD----GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 363 li~~-a~~~~~L~------~~fl~~i~~ad~ll~VvD~s~~~~----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+..+ ..++..++ ....+.++.+.+.-++-...+..+ ......+..+.+.+.. ++++...|.|++
T Consensus 426 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~l-----Aral~~~p~ill 500 (578)
T 4a82_A 426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI-----ARIFLNNPPILI 500 (578)
T ss_dssp CCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH-----HHHHHHCCSEEE
T ss_pred cCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHH-----HHHHHcCCCEEE
Confidence 3322 11111111 111222222221111111110000 0011245555555433 334557888988
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+ +-+|......+.+.+.+...+..++.||+
T Consensus 501 lDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH 534 (578)
T 4a82_A 501 LDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534 (578)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred EECccccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 8 77887666666666766655555665554
No 267
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.09 E-value=2.6e-06 Score=92.81 Aligned_cols=150 Identities=21% Similarity=0.375 Sum_probs=85.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-------------EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-------------~l~DtPG 362 (494)
-..++|+++.+..++|+|++|||||||++.|++. ++|..|.+.+++..+ ++...|-
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 427 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCC
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCc
Confidence 3679999999999999999999999999999997 556777777766321 2222333
Q ss_pred ccCC-ccccccch------hhHHHHHHhhceeeEEEecCCC----CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 363 LIKG-AHENRGLG------HAFLRHIERTKVLAYVVDLASG----LDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 363 li~~-a~~~~~L~------~~fl~~i~~ad~ll~VvD~s~~----~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+..+ ..++..++ ....+.++.+.+.-++-...+. ........+..+.+.+.. ++++...|.|++
T Consensus 428 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l-----ARal~~~p~ill 502 (587)
T 3qf4_A 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI-----ARALVKKPKVLI 502 (587)
T ss_dssp CCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH-----HHHHHTCCSEEE
T ss_pred CcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH-----HHHHHcCCCEEE
Confidence 3221 01111111 1112222222211111000000 001112355666655533 345567899998
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+ +-+|......+.+.+.+...+..++.||+
T Consensus 503 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 536 (587)
T 3qf4_A 503 LDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536 (587)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred EECCcccCCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 8 67787766777777777666666776665
No 268
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.07 E-value=4.1e-06 Score=91.59 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=74.6
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhh---
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHA--- 376 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~--- 376 (494)
+++..+..++|+|++|||||||++.|++... ..+...+ ....+.+..+ +...........+...
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~~~i~~v~Q~---------~~~~~~~tv~e~~~~~~~~ 444 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQY---------IKAEYEGTVYELLSKIDSS 444 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---CCCEEEECSS---------CCCCCSSBHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---eeEEEEEecC---------ccCCCCCcHHHHHHhhhcc
Confidence 4467899999999999999999999999732 2222211 1112222111 1110000000000000
Q ss_pred HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHHHHc-
Q 011082 377 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV- 451 (494)
Q Consensus 377 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~- 451 (494)
....-+.++-++-.+++.+..+......+..+.+.+.. +.+|...|.++++ |-+|......+.+.|.+..
T Consensus 445 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~i-----AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 519 (607)
T 3bk7_A 445 KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI-----AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519 (607)
T ss_dssp HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHH-----HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH-----HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 00001112222333344332222223355566555533 3456788999998 8899887777777776653
Q ss_pred -CCCCEEEEEc
Q 011082 452 -QGVPIYPVCA 461 (494)
Q Consensus 452 -~~~~ii~ISA 461 (494)
.+..++.||+
T Consensus 520 ~~g~tvi~vsH 530 (607)
T 3bk7_A 520 KNEKTALVVEH 530 (607)
T ss_dssp HTTCEEEEECS
T ss_pred hCCCEEEEEeC
Confidence 3556666654
No 269
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.06 E-value=9.5e-06 Score=81.20 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|+|+|++|||||||++.|++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999864
No 270
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.03 E-value=3.7e-06 Score=90.68 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=73.2
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhH-H
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF-L 378 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~f-l 378 (494)
|++..+..++|+|++|||||||+++|++..+ ..+...+ ....+.+..+ +...........+. .+ .
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~---------~~~~~~~tv~~~~~-~~~~ 373 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQY---------IKADYEGTVYELLS-KIDA 373 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSS---------CCCCCSSBHHHHHH-HHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecC---------CcCCCCCcHHHHHH-hhhc
Confidence 3457899999999999999999999999732 2222211 1112222211 11100000000000 00 0
Q ss_pred HH---HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHHHHc
Q 011082 379 RH---IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 451 (494)
Q Consensus 379 ~~---i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~ 451 (494)
.. -+.++-++-.+++.+..+......+..+.+.+.. +..+...|.++++ |.+|......+.+.|.+..
T Consensus 374 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~l-----AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 374 SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI-----AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp HHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHH-----HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH-----HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 00 0112222222233222222222355555555533 3356688999998 8999888777777776643
Q ss_pred --CCCCEEEEEc
Q 011082 452 --QGVPIYPVCA 461 (494)
Q Consensus 452 --~~~~ii~ISA 461 (494)
.+..++.||+
T Consensus 449 ~~~g~tvi~vsH 460 (538)
T 1yqt_A 449 EKNEKTALVVEH 460 (538)
T ss_dssp HHHTCEEEEECS
T ss_pred HhCCCEEEEEeC
Confidence 2456666664
No 271
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.02 E-value=7.6e-06 Score=89.23 Aligned_cols=149 Identities=24% Similarity=0.381 Sum_probs=83.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPGL 363 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPGl 363 (494)
..++|+++.+..++|+|++|||||||++.|++. ++|..|.+.+++.. + .+...|.+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l 429 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL 429 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCC
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcc
Confidence 578999999999999999999999999999997 45666777666521 1 22233333
Q ss_pred cCC-ccccccch---------hhHHHHHHhhceeeEEEecCCCCC----CCCCCCCHHHHHHHHHHHHhhhcccCCCCEE
Q 011082 364 IKG-AHENRGLG---------HAFLRHIERTKVLAYVVDLASGLD----GRKGIKPWKQLRDLIIELEHHQEGLSDRPSL 429 (494)
Q Consensus 364 i~~-a~~~~~L~---------~~fl~~i~~ad~ll~VvD~s~~~~----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I 429 (494)
... ..++..++ ....+.++.+.+-=++-...+..+ ......+..+.+.+... +++...|.|
T Consensus 430 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA-----ral~~~p~i 504 (595)
T 2yl4_A 430 FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA-----RALLKNPKI 504 (595)
T ss_dssp CSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH-----HHHHHCCSE
T ss_pred cCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH-----HHHHcCCCE
Confidence 221 00111111 111122222211000000000000 01123566666655433 345568888
Q ss_pred EEE----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 430 VVA----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 430 lVl----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+++ +-+|......+.+.+.+...+..++.||+
T Consensus 505 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 540 (595)
T 2yl4_A 505 LLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 540 (595)
T ss_dssp EEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECC
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 888 77887776777777777655555665554
No 272
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.02 E-value=2.7e-06 Score=92.56 Aligned_cols=149 Identities=14% Similarity=0.185 Sum_probs=83.2
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPG 362 (494)
-..++|+++.+..++|+|++|||||||++.|++. ++|..|.+.+++.. + .+...|.
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc
Confidence 4579999999999999999999999999999997 45666777666521 1 2222233
Q ss_pred ccCC-ccccccch-------hhHHHHHHhhceeeEEEec-CC----CCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEE
Q 011082 363 LIKG-AHENRGLG-------HAFLRHIERTKVLAYVVDL-AS----GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL 429 (494)
Q Consensus 363 li~~-a~~~~~L~-------~~fl~~i~~ad~ll~VvD~-s~----~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I 429 (494)
+..+ ..++..++ ....+.++.+.+- ..++. .+ .........+..+.+.+.. ++++...|.|
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i-----Aral~~~p~i 501 (582)
T 3b60_A 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAI-----ARALLRDSPI 501 (582)
T ss_dssp CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH-----HHHHHHCCSE
T ss_pred CCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHH-----HHHHHhCCCE
Confidence 3221 00111111 0111222222110 00100 00 0000112355666665533 2345568888
Q ss_pred EEE----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 430 VVA----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 430 lVl----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+++ +-+|......+.+.+.+...+..++.||+
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 537 (582)
T 3b60_A 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537 (582)
T ss_dssp EEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECS
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 888 77887777777777777655556666654
No 273
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.00 E-value=9.6e-06 Score=76.70 Aligned_cols=102 Identities=13% Similarity=-0.011 Sum_probs=65.3
Q ss_pred chhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhh-hcc--cCCCCEEEEEeCC-CcCCh---HHHHH
Q 011082 373 LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHH-QEG--LSDRPSLVVANKI-DEDGA---EEVYE 445 (494)
Q Consensus 373 L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~-~~~--l~~~P~IlVlNKi-Dl~~~---~e~~~ 445 (494)
+...|..+++.+|.||||||.++... .+ ...++ .+|..+ ... +.+.|.+|++||. |++.+ .++.+
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R----~e---ak~EL-~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKR----HE---WQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCC----CC---HHHHH-HHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhH----HH---HHHHH-HHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 44556778899999999999987311 12 22222 222222 122 3578999999995 77654 34333
Q ss_pred HHHH--HcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 446 ELER--RVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 446 ~L~~--~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
.|.- ....+.|..|||++|+||.+-++||.+.+....
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 113567999999999999999999988776543
No 274
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.99 E-value=8.9e-06 Score=87.68 Aligned_cols=141 Identities=14% Similarity=0.099 Sum_probs=75.1
Q ss_pred EEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEec-CCCccCCccccccchhhHH
Q 011082 300 ILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVAD-IPGLIKGAHENRGLGHAFL 378 (494)
Q Consensus 300 ~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~D-tPGli~~a~~~~~L~~~fl 378 (494)
++++..+..++|+|++|||||||+++|++. +.|..|.+.+.+..+.+.. .+...... .....+
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~i~~~~q~~~~~~~~-----tv~~~l 351 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQILSYKPQRIFPNYDG-----TVQQYL 351 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSBCCEESSCCCEEEECSSCCCCCSS-----BHHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCeeeEeechhcccccCC-----CHHHHH
Confidence 345788999999999999999999999997 3444555544443222110 00000000 000000
Q ss_pred HHH---------HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHH
Q 011082 379 RHI---------ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 445 (494)
Q Consensus 379 ~~i---------~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~ 445 (494)
... ..++-++-.+++.+..+......+..+.+.+.. +.+|...|.|+++ +-+|.....++.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~i-----AraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYI-----AATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp HHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHH-----HHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH-----HHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 000 001111111122221122222355566555543 3355678999998 8889877777777
Q ss_pred HHHHHc--CCCCEEEEEc
Q 011082 446 ELERRV--QGVPIYPVCA 461 (494)
Q Consensus 446 ~L~~~~--~~~~ii~ISA 461 (494)
.|.+.. .+..++.||+
T Consensus 427 ~l~~l~~~~g~tvi~vsH 444 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDH 444 (538)
T ss_dssp HHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHhCCCEEEEEeC
Confidence 776654 3556666664
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.99 E-value=1.1e-05 Score=80.44 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=78.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC------CCCcccc--------------------ccee----ecce------eeEEe
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA------KPAVGHY--------------------SFTT----LRPN------LGNMN 349 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~------~~~i~~~--------------------~ftT----l~p~------~g~v~ 349 (494)
...|+++|++|+||||++..|+.. ++.+.+. ++.. .+|. ...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999998732 2211110 0000 0000 00001
Q ss_pred ecCcceEEecCCCccCCccccccchhhH--HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC
Q 011082 350 FDDIQITVADIPGLIKGAHENRGLGHAF--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 427 (494)
Q Consensus 350 ~~~~~~~l~DtPGli~~a~~~~~L~~~f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 427 (494)
..++.++++||||..... ....+.... +..+..+|.+++|+|+... .. .+.. +..+.+ ..|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g------~~---~~~~----~~~~~~---~~~ 240 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG------QK---AYDL----ASKFNQ---ASK 240 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG------GG---HHHH----HHHHHH---TCT
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch------HH---HHHH----HHHHHh---hCC
Confidence 134679999999986410 000111111 1234567899999997641 11 1211 222222 234
Q ss_pred -EEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHH
Q 011082 428 -SLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPEL 470 (494)
Q Consensus 428 -~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L 470 (494)
..+|+||+|..........+.... +.++.+++ .|+++++|
T Consensus 241 i~gvVlnk~D~~~~~g~~~~~~~~~-~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 241 IGTIIITKMDGTAKGGGALSAVAAT-GATIKFIG--TGEKIDEL 281 (297)
T ss_dssp TEEEEEECGGGCTTHHHHHHHHHTT-TCCEEEEE--CSSSTTCE
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHH-CcCEEEEe--CCCChhhc
Confidence 778899999875443333343333 57888887 57777653
No 276
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.96 E-value=1.8e-06 Score=94.29 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=40.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
..++|+++.+..++|+|++|||||||++.|++. .+|..|.+.+++
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g 416 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDG 416 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETT
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECC
Confidence 468999999999999999999999999999997 567778877776
No 277
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.96 E-value=1.4e-05 Score=82.13 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=60.3
Q ss_pred hhHHHHHHhh-ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHH
Q 011082 375 HAFLRHIERT-KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELER 449 (494)
Q Consensus 375 ~~fl~~i~~a-d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~ 449 (494)
..+++++.+. +++++|+|++++ . ..+..++..+ +.++|.|+|+||+|+.... ...+.+..
T Consensus 60 ~~~l~~i~~~~~~il~VvD~~d~---------~---~~~~~~l~~~---~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 60 LRILNGIGKSDALVVKIVDIFDF---------N---GSWLPGLHRF---VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp HHHHHHHHHSCCEEEEEEETTSH---------H---HHCCTTHHHH---SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhccCcEEEEEEECCCC---------c---ccHHHHHHHH---hCCCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 3456666544 599999999862 1 2233344443 2378999999999997542 22222222
Q ss_pred Hc--CCC---CEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 450 RV--QGV---PIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 450 ~~--~~~---~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+ .+. +++++||+++.|+++|++.|.++..
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 11 233 7899999999999999999987653
No 278
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.94 E-value=1e-05 Score=83.04 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=61.3
Q ss_pred hhHHHHH-HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHH
Q 011082 375 HAFLRHI-ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELER 449 (494)
Q Consensus 375 ~~fl~~i-~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~ 449 (494)
..++.++ +.++++++|+|++++.. .+..++..+ +.++|+|+|+||+|+...+ ...+.+.+
T Consensus 62 ~~~L~~~~~~~~lil~VvD~~d~~~------------s~~~~l~~~---l~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 62 LSMLHRIGESKALVVNIVDIFDFNG------------SFIPGLPRF---AADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp HHHHHHHHHHCCEEEEEEETTCSGG------------GCCSSHHHH---CTTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred HHHHHHhhccCcEEEEEEECCCCCC------------chhhHHHHH---hCCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 3456666 77789999999997421 112222222 2478999999999997642 22233332
Q ss_pred Hc--CCC---CEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 450 RV--QGV---PIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 450 ~~--~~~---~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+ .+. +++++||+++.|+++|++.|.+++.
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 22 233 6899999999999999999988764
No 279
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.85 E-value=1.2e-05 Score=80.81 Aligned_cols=25 Identities=44% Similarity=0.460 Sum_probs=22.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.++.++|+|++||||||||+.|.+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3568999999999999999999976
No 280
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.77 E-value=1.4e-05 Score=78.13 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=60.4
Q ss_pred chhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc-
Q 011082 373 LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV- 451 (494)
Q Consensus 373 L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~- 451 (494)
...+++.++..+|++++|+|+.++.... .+ .+. + + ++|.|+|+||+|+.+... .+.+.+.+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~---~~--~l~--------l---l-~k~~iivlNK~DL~~~~~-~~~~~~~~~ 72 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATS---AY--GVD--------F---S-RKETIILLNKVDIADEKT-TKKWVEFFK 72 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTS---CT--TSC--------C---T-TSEEEEEEECGGGSCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCc---Ch--HHH--------h---c-CCCcEEEEECccCCCHHH-HHHHHHHHH
Confidence 3356788999999999999998753311 11 011 1 1 689999999999997543 22222222
Q ss_pred -CCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 452 -QGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 452 -~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
.+.++ ++||+++.|+++|++.|...
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 35677 99999999999998887554
No 281
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.75 E-value=5e-05 Score=75.09 Aligned_cols=106 Identities=13% Similarity=0.002 Sum_probs=66.8
Q ss_pred cchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeC-CCcCCh---HHHHHHH
Q 011082 372 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK-IDEDGA---EEVYEEL 447 (494)
Q Consensus 372 ~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNK-iDl~~~---~e~~~~L 447 (494)
.+...|..+++.+|.+|||||.++... .+....+.++..-|.. ...+.+.|.+|++|| -|++.+ .++.+.|
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreR----leak~EL~eL~~mL~e-~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L 273 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKR----HEWQDEFSHIMAMTDP-AFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 273 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCC----CCHHHHHHHHHHHHCH-HHHCTTCCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhH----HHHHHHHHHHHHHhcc-hhhcCCCeEEEEeCCcccccCCCCHHHHHHHc
Confidence 355567788899999999999988321 1222222222111110 112457899999996 588754 3333332
Q ss_pred HH--HcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 448 ER--RVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 448 ~~--~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
.- ....+.|..+||.+|+|+.+-+++|.+.+....
T Consensus 274 ~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 274 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred CCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 11 113567999999999999999999998886543
No 282
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.75 E-value=1.3e-05 Score=94.78 Aligned_cols=150 Identities=23% Similarity=0.326 Sum_probs=83.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-------------EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-------------~l~DtPG 362 (494)
-..++|+++.+..++|||++|||||||++.|.+. .+|..|.+.+++..+ ++...|-
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 474 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV 474 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc
Confidence 3579999999999999999999999999999997 567778887776321 2222233
Q ss_pred ccCC-ccccccch------hhHHHHHHhhceeeEEEecCCCCC----CCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 363 LIKG-AHENRGLG------HAFLRHIERTKVLAYVVDLASGLD----GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 363 li~~-a~~~~~L~------~~fl~~i~~ad~ll~VvD~s~~~~----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+..+ ..+|..++ ......++.+.+.-++-...+..+ ......+..+.+.+.. ++++...|.|++
T Consensus 475 l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qriai-----ARal~~~p~ili 549 (1284)
T 3g5u_A 475 LFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAI-----ARALVRNPKILL 549 (1284)
T ss_dssp CCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHH-----HHHHHHCCSEEE
T ss_pred cCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHH-----HHHHhcCCCEEE
Confidence 3221 11111111 111222222221111111111100 0111345666555533 334556888998
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+ +-+|......+.+.+.....+..++.||+
T Consensus 550 LDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH 583 (1284)
T 3g5u_A 550 LDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583 (1284)
T ss_dssp EESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECS
T ss_pred EECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 8 77786655555556655555667777765
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.75 E-value=4.1e-05 Score=76.66 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.3
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
....+..|+|+|++||||||++..|++.
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3445668999999999999999999753
No 284
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.75 E-value=1.2e-05 Score=95.14 Aligned_cols=150 Identities=21% Similarity=0.322 Sum_probs=84.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-------------EEecCCCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIPGL 363 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-------------~l~DtPGl 363 (494)
+.++|+++.+..|||+|++|||||||++.|.+. .+|..|.+.+++..+ ++..-|-+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 1118 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL 1118 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCC
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcc
Confidence 468899999999999999999999999999997 456666666655211 11111211
Q ss_pred cCC-ccccccc-------h-hhHHHHHHhhceeeEEEecCCCCCC----CCCCCCHHHHHHHHHHHHhhhcccCCCCEEE
Q 011082 364 IKG-AHENRGL-------G-HAFLRHIERTKVLAYVVDLASGLDG----RKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 430 (494)
Q Consensus 364 i~~-a~~~~~L-------~-~~fl~~i~~ad~ll~VvD~s~~~~~----~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Il 430 (494)
..+ ..+|..+ . ....+.++.+.+--++-...+..+. .....+..+.+.+.. ++++...|.|+
T Consensus 1119 ~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i-----ARal~~~p~iL 1193 (1284)
T 3g5u_A 1119 FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI-----ARALVRQPHIL 1193 (1284)
T ss_dssp CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH-----HHHHHHCCSSE
T ss_pred ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHH-----HHHHHcCCCEE
Confidence 111 0111111 1 1122223333221111111111110 111355666665543 33445678888
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCCEEEEEcc
Q 011082 431 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 431 Vl----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA~ 462 (494)
++ +-+|......+.+.+.+...+..++.||+.
T Consensus 1194 iLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~ 1229 (1284)
T 3g5u_A 1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229 (1284)
T ss_dssp EEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 88 788887767777777776566778877753
No 285
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.73 E-value=2.5e-05 Score=92.57 Aligned_cols=150 Identities=20% Similarity=0.331 Sum_probs=89.2
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPG 362 (494)
-+.++|+++.+..|+|||++|||||||++.|.+. .+|..|.+.+++.. + ++...|-
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~ 502 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA 502 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccCCcce
Confidence 3689999999999999999999999999999997 67888888887632 1 2222333
Q ss_pred ccCC-ccccccchh------hHHHHHHhhceeeEEEecCCCCCC----CCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 363 LIKG-AHENRGLGH------AFLRHIERTKVLAYVVDLASGLDG----RKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 363 li~~-a~~~~~L~~------~fl~~i~~ad~ll~VvD~s~~~~~----~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+..+ ..+|.-++. ...+.++.|.+-=++-.+.+..+. .-...+..+.+.+.. ++++...|.|++
T Consensus 503 Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiai-----ARAl~~~~~Ili 577 (1321)
T 4f4c_A 503 LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAI-----ARALVRNPKILL 577 (1321)
T ss_dssp CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHH-----HHHHTTCCSEEE
T ss_pred eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHH-----HHHHccCCCEEE
Confidence 2221 111211111 122333333211111111111110 001355666665533 345667899999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+ .-+|......+.+.|.+...+.++|.|++
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaH 611 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECS
T ss_pred EecccccCCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 8 77888776667777777666666776664
No 286
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.71 E-value=2.3e-05 Score=82.33 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=43.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC---------------CCCcccccceeecceeeEEeec-----------CcceEEec
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA---------------KPAVGHYSFTTLRPNLGNMNFD-----------DIQITVAD 359 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~---------------~~~i~~~~ftTl~p~~g~v~~~-----------~~~~~l~D 359 (494)
...|+|+|.+++|||||||.|.+. +..+-....||...+.|...+. +..++++|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 357999999999999999999863 1222223336666677776653 25699999
Q ss_pred CCCccC
Q 011082 360 IPGLIK 365 (494)
Q Consensus 360 tPGli~ 365 (494)
|||+..
T Consensus 147 TeG~~~ 152 (447)
T 3q5d_A 147 TQGTFD 152 (447)
T ss_dssp EECCCS
T ss_pred CCcccc
Confidence 999875
No 287
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.70 E-value=3.9e-05 Score=83.82 Aligned_cols=151 Identities=12% Similarity=0.088 Sum_probs=74.0
Q ss_pred EEEEEeecc-----ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccccc
Q 011082 298 ELILELKSI-----ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRG 372 (494)
Q Consensus 298 ~i~lelk~~-----~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~ 372 (494)
.++|++..+ ..++|+|++|||||||++.|++.....+..... ....+.+... ....+..|.- +.... .
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~--~~~i~~~~q~-~~~~~~~tv~--e~~~~--~ 437 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP--KLNVSMKPQK-IAPKFPGTVR--QLFFK--K 437 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCC--SCCEEEECSS-CCCCCCSBHH--HHHHH--H
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCcc--CCcEEEeccc-ccccCCccHH--HHHHH--H
Confidence 466777766 679999999999999999999974322211100 0011111110 0000000000 00000 0
Q ss_pred chhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHH
Q 011082 373 LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELE 448 (494)
Q Consensus 373 L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~ 448 (494)
+...+.. ...++-++-.+++.+..+......+..+.+.+.. +.+|...|.|+++ +.+|......+.+.|.
T Consensus 438 ~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~i-----AraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~ 511 (608)
T 3j16_B 438 IRGQFLN-PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAI-----VLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511 (608)
T ss_dssp CSSTTTS-HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHH-----HHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHH
T ss_pred hhccccc-HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH-----HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 0000000 0011111222223332222333466676666543 3467789999998 7888776666666666
Q ss_pred HHc--CCCCEEEEEc
Q 011082 449 RRV--QGVPIYPVCA 461 (494)
Q Consensus 449 ~~~--~~~~ii~ISA 461 (494)
+.. .+..++.||+
T Consensus 512 ~l~~~~g~tviivtH 526 (608)
T 3j16_B 512 RFILHNKKTAFIVEH 526 (608)
T ss_dssp HHHHHHTCEEEEECS
T ss_pred HHHHhCCCEEEEEeC
Confidence 543 2556666664
No 288
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.65 E-value=2.5e-05 Score=84.17 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 404 KPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 404 ~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
.+..+.+.+. ++.+|...|.|+++ |-+|......+.+.|++...+..++.||+
T Consensus 139 LSgGe~Qrv~-----iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsH 195 (538)
T 3ozx_A 139 LSGGGLQRLL-----VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH 195 (538)
T ss_dssp CCHHHHHHHH-----HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred CCHHHHHHHH-----HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 4455555443 33455688999998 78887776777777777655556666664
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.62 E-value=0.00013 Score=73.33 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=24.8
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
++|....+..|+++|++|+||||++..|++
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444556677899999999999999999865
No 290
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.58 E-value=1.6e-05 Score=86.94 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=25.4
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..+..++|+|++||||||||+.|++.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 3567889999999999999999999997
No 291
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.58 E-value=2.9e-05 Score=83.63 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=26.0
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
++..+..++|+|++|||||||++.|++..
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46777899999999999999999999973
No 292
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.56 E-value=1.3e-05 Score=72.46 Aligned_cols=32 Identities=31% Similarity=0.244 Sum_probs=27.5
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
++|+++.+..++|+|++|||||||++.|++.-
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45566777889999999999999999999863
No 293
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.44 E-value=3.2e-05 Score=84.46 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.6
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..+..++|+|++|||||||++.|++.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 4667789999999999999999999997
No 294
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=4.9e-05 Score=71.25 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=42.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC--CcccccceeecceeeEEeecCcceEEecCCCc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~--~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
.+..|+|+|++|||||||+++|.+..+ .....+.||..|..|. .++..+.++|...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 445799999999999999999997654 2355667888887775 45666666666554
No 295
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.41 E-value=0.00056 Score=68.20 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.9
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
++|++..+..++|+|++|||||||++.|++.
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4556677789999999999999999999875
No 296
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.40 E-value=4.4e-05 Score=76.00 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.1
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+..|+|+|++||||||++..|++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999874
No 297
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.36 E-value=4.6e-05 Score=76.34 Aligned_cols=56 Identities=30% Similarity=0.259 Sum_probs=33.2
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC-CCcccccc-------eeecceeeEEeecCcceEEecCCCccC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLIK 365 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~f-------tTl~p~~g~v~~~~~~~~l~DtPGli~ 365 (494)
+..++|+|++|||||||+|+|++.. +..+...+ +|.... .+... ...++||||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCccc
Confidence 4479999999999999999999863 33444432 332221 12222 357899999875
No 298
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.34 E-value=0.00014 Score=73.58 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=35.4
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
.+++.++.+..|+|+|++|||||||+++|++. +.|..|.+.+++
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~-----------~~~~~g~i~i~~ 206 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF-----------IPKEERIISIED 206 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG-----------SCTTSCEEEEES
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCcEEEECC
Confidence 34556677889999999999999999999986 455667776665
No 299
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.33 E-value=0.0011 Score=67.62 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=27.6
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.++|+++.+..|+|||++|||||||++.|++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35666777889999999999999999999874
No 300
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.31 E-value=0.00041 Score=72.48 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.1
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
....|+++|++|+||||++..|++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999864
No 301
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.30 E-value=0.0006 Score=71.43 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.1
Q ss_pred ccceeeeeCCCCCcHHHHHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
....|+++|.+|+||||+...|+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999887
No 302
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.27 E-value=0.00023 Score=70.65 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..++++|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998753
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.23 E-value=0.00012 Score=69.20 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=24.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
..++|++..+..++|+|++|||||||++.|++..
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3577888999999999999999999999999864
No 304
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.22 E-value=0.00016 Score=73.77 Aligned_cols=56 Identities=27% Similarity=0.217 Sum_probs=35.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC--CCcccccc-------eeecceeeEEeecCcceEEecCCCccC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLIK 365 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~--~~i~~~~f-------tTl~p~~g~v~~~~~~~~l~DtPGli~ 365 (494)
..++|+|++|||||||+|+|++.. +..+.... +|.....+.+. ....++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~---q~~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP---HGGDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT---TSCEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC---CCCEecCcccHHH
Confidence 479999999999999999999874 33333322 23333333322 2346789999876
No 305
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.21 E-value=0.00022 Score=64.67 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.2
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
++|++..+..++|+|+||||||||++.+.+
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 678899999999999999999999998653
No 306
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=0.00022 Score=70.87 Aligned_cols=57 Identities=32% Similarity=0.353 Sum_probs=34.2
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC-CCcccccc-------eeecceeeEEeecCcceEEecCCCccC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLIK 365 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~f-------tTl~p~~g~v~~~~~~~~l~DtPGli~ 365 (494)
...++|+|++|||||||||+|++.. +..+...+ +|... ..+... ....+.|+||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~--~~~~~~-~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA--QLLKFD-FGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC--CEEECT-TSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeee--EEEEcC-CCCEEEECcCCCc
Confidence 4578999999999999999999873 33343333 22111 112221 2347789999754
No 307
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=0.00024 Score=71.09 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=55.3
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHc--CCCC
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV--QGVP 455 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~--~~~~ 455 (494)
+.++|.+++|+|+..+. .....+..++..... .++|.++|+||+|+.+..+ ..+.+.+.+ .+.+
T Consensus 84 ~anvD~v~~V~~~~~p~------~~~~~i~r~L~~~~~-----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPS------FSTALLDRFLVLVEA-----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp EECCCEEEEEEESTTTT------CCHHHHHHHHHHHHT-----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhCCEEEEEEeCCCCC------CCHHHHHHHHHHHHH-----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 56789999999998642 233344433322211 3789999999999987643 234444444 3678
Q ss_pred EEEEEcccCCCHHHHHHH
Q 011082 456 IYPVCAVLEEGVPELKVG 473 (494)
Q Consensus 456 ii~ISA~~g~gI~~L~~~ 473 (494)
++.+||.++.|+++|++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999998876553
No 308
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.16 E-value=0.00065 Score=74.96 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=25.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHH
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLL 323 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLL 323 (494)
..++|++..+..++|+|++|||||||+
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHh
Confidence 468899999999999999999999996
No 309
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.11 E-value=0.00047 Score=68.60 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=34.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC-CCCcccccc-------eeecceeeEEeecCcceEEecCCCcc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA-KPAVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLI 364 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~-~~~i~~~~f-------tTl~p~~g~v~~~~~~~~l~DtPGli 364 (494)
..++|+|++|||||||+|+|+ . .+..+...+ +|..+ ..+... .--.+.|+||+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~-~~g~v~d~pg~~ 227 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFG-KGSFVGDTPGFS 227 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEET-TTEEEESSCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcC-CCcEEEECcCcC
Confidence 478999999999999999999 5 344454444 22221 112222 234788999985
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.08 E-value=0.00018 Score=68.18 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=21.9
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHH-cCC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAIS-RAK 330 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt-~~~ 330 (494)
.++|++..+..|+|+|++|||||||++.|+ +..
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467788889999999999999999999999 763
No 311
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.06 E-value=0.00031 Score=64.05 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=28.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC--CcccccceeecceeeE
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSFTTLRPNLGN 347 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~--~i~~~~ftTl~p~~g~ 347 (494)
..++|+|++|||||||++.|.+..+ .......+|..|..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 4689999999999999999998643 2234455666665543
No 312
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.05 E-value=0.00018 Score=66.91 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=21.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..++|+|++|||||||++.|++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999885
No 313
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.02 E-value=0.00045 Score=78.89 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=38.3
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD 351 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~ 351 (494)
-..++|++..+..|+|+|++|||||||++.|+|. +.|..|.+.++
T Consensus 689 L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~~ 733 (986)
T 2iw3_A 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYTH 733 (986)
T ss_dssp EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEEC
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEc
Confidence 3579999999999999999999999999999997 44556666554
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.01 E-value=0.00029 Score=64.90 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.0
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
++..+..|+|+|++|||||||++.|++..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45556789999999999999999999863
No 315
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.97 E-value=0.00026 Score=74.99 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=29.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++.. ..++|+|++|||||||+++|++.
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 467888888 99999999999999999999875
No 316
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.95 E-value=0.00035 Score=65.20 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=23.9
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
++..+..++|+|++|||||||+++|++..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45667789999999999999999999864
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.91 E-value=0.00033 Score=64.23 Aligned_cols=40 Identities=33% Similarity=0.322 Sum_probs=27.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC--cccccceeecceeeE
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA--VGHYSFTTLRPNLGN 347 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~--i~~~~ftTl~p~~g~ 347 (494)
.++|+|++|||||||++.|++..+. ......+|..|..|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge 44 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCc
Confidence 5899999999999999999986431 112233454455544
No 318
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.90 E-value=0.0032 Score=64.25 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=51.5
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH--HHHHHHHHc--CCCCE
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRV--QGVPI 456 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e--~~~~L~~~~--~~~~i 456 (494)
+.++|.+++|.. ..+ ......+..++..... .++|.|||+||+|+.+... ..+.+...+ .+.++
T Consensus 128 ~anvD~v~iv~a-~~P------~~~~~~i~r~L~~a~~-----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v 195 (358)
T 2rcn_A 128 AANIDQIVIVSA-ILP------ELSLNIIDRYLVGCET-----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRV 195 (358)
T ss_dssp EECCCEEEEEEE-STT------TCCHHHHHHHHHHHHH-----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCE
T ss_pred HhcCCEEEEEEe-CCC------CCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcE
Confidence 356788886644 332 1223333333322211 2678899999999987654 133333333 46789
Q ss_pred EEEEcccCCCHHHHHHHH
Q 011082 457 YPVCAVLEEGVPELKVGL 474 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I 474 (494)
+++||.++.|+++|...+
T Consensus 196 ~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 196 LMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHhc
Confidence 999999999999987654
No 319
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.85 E-value=0.00042 Score=65.78 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.1
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcCCC
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRAKP 331 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~~~ 331 (494)
++.+..++|+|++|||||||+++|++..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45666899999999999999999998743
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.77 E-value=0.00056 Score=65.55 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=24.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..|||+|++|||||||++.|++.
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 357788888999999999999999999999874
No 321
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.76 E-value=0.00029 Score=72.01 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=35.0
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
.+++.++.+..|+|+|++|||||||+++|++. ++|..|.+.+++
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~-----------~~~~~g~I~ie~ 210 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQE-----------IPFDQRLITIED 210 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT-----------SCTTSCEEEEES
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc-----------CCCCceEEEECC
Confidence 45667778889999999999999999999997 445556665554
No 322
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.70 E-value=0.001 Score=60.56 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..+..|+|+|+||||||||++.|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34557999999999999999999985
No 323
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.64 E-value=0.00069 Score=63.20 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|+|+|++|||||||++.|++.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999985
No 324
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.00043 Score=63.25 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=27.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecce---eeEEeecCcceE
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN---LGNMNFDDIQIT 356 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~---~g~v~~~~~~~~ 356 (494)
..|+|+|++|||||||++.|.+. +.+. .|.+.+++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~-----------~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI-----------LRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH-----------HHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-----------hhhcCCceEEEEEcCcccc
Confidence 47999999999999999999986 4454 677777765443
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.60 E-value=0.00041 Score=69.27 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.2
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.++|+++.+..|+|+|++|||||||++.|++.
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 35667788889999999999999999999975
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.59 E-value=0.00091 Score=61.29 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.++|+|+||||||||++.|++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 327
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.51 E-value=0.0016 Score=60.80 Aligned_cols=42 Identities=26% Similarity=0.157 Sum_probs=29.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC--Ccccccceeecceee
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSFTTLRPNLG 346 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~--~i~~~~ftTl~p~~g 346 (494)
.+..|+|+|++|||||||++.|++..+ .......+|..|..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 345799999999999999999998743 233344455555443
No 328
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.00043 Score=73.10 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=28.4
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
++|+++.+..|+|+|++|||||||++.|++.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5667788899999999999999999999987
No 329
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.44 E-value=0.0014 Score=66.61 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=27.2
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
|.+..+.+++|+|++|||||||++.|++.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67888899999999999999999999987
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.44 E-value=0.00087 Score=65.32 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+..|+|+|++|||||||+++|++.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44557999999999999999999985
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.38 E-value=0.0011 Score=62.51 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=23.4
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..+..++|+|++|||||||++.|++.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999986
No 332
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.0017 Score=59.92 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=23.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|.+..+..|+|+|++||||||+.+.|+..
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457778888889999999999999999999853
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.32 E-value=0.0018 Score=59.46 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=23.7
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
+..+..|+|+|++|||||||++.|.+.-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455689999999999999999999864
No 334
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.25 E-value=0.022 Score=52.04 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=50.5
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
+.++++|+|+... ......+..+|.+++++..+. .. .....+...+......-...+..+|+
T Consensus 76 yD~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTPSP--------LD-FSAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp SSEEEEECCSSSS---------HHHHHHHHHCSEEEEEECSCT--------TT-HHHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCEEEEECCCCCC---------HHHHHHHHHCCEEEEEecCCH--------HH-HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 6789999998643 233456778999999998775 34 55666666665442111234668899
Q ss_pred eCCCcCCh--HHHHHHHHH
Q 011082 433 NKIDEDGA--EEVYEELER 449 (494)
Q Consensus 433 NKiDl~~~--~e~~~~L~~ 449 (494)
|++|.... .+..+.+++
T Consensus 138 N~~~~~~~~~~~~~~~l~~ 156 (206)
T 4dzz_A 138 TRKIEMATMLNVLKESIKD 156 (206)
T ss_dssp CSBCTTEEEEHHHHHHHHH
T ss_pred eccCCCchHHHHHHHHHHH
Confidence 99996432 344444444
No 335
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.21 E-value=0.0019 Score=67.62 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=27.1
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
|.+..+..++|+|++|||||||++.|++.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 67788889999999999999999999986
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.18 E-value=0.0087 Score=60.94 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.1
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
....|+|+|++|||||||+++|++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3447999999999999999999985
No 337
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.18 E-value=0.0027 Score=60.00 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.3
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+..+..++|+|+||||||||++.|++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 56777899999999999999999983
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.12 E-value=0.0011 Score=71.01 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=26.5
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+++.++.+..|+|+|++|||||||+++|++.
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4445567778999999999999999999986
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.09 E-value=0.0026 Score=59.28 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=24.0
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..+..++|+|+||||||||++.|++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999873
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.08 E-value=0.0024 Score=59.20 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.1
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..|+|+|++|||||||++.|++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999999985
No 341
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.03 E-value=0.004 Score=71.15 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=30.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++-
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999999999999953
No 342
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.01 E-value=0.0029 Score=58.53 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+|++|||||||++.|++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999999875
No 343
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.01 E-value=0.0038 Score=56.32 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.5
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+++... ..+|+|++|||||||+.+|...
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 44566655 7899999999999999999753
No 344
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.97 E-value=0.0033 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=22.0
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..|+|+|++|||||||++.|++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999874
No 345
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.87 E-value=0.0038 Score=55.72 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|+|+|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 346
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.81 E-value=0.0037 Score=56.85 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=19.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.++|+|++|||||||++.|++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999986
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.77 E-value=0.0036 Score=62.59 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+..|+|+|++|||||||++.|++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34557999999999999999999985
No 348
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.77 E-value=0.017 Score=65.85 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=26.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHH
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAI 326 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~L 326 (494)
..++|....+..++|+|+|||||||||+.+
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 456777777889999999999999999998
No 349
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.76 E-value=0.00061 Score=65.14 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=23.5
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+++.. ..++|+|++|||||||+++|++.
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcc
Confidence 44444 57899999999999999999886
No 350
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.72 E-value=0.0025 Score=64.89 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.0
Q ss_pred EEEEeec--cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 299 LILELKS--IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 299 i~lelk~--~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+.+.. ..+++|+|++|||||||++.|++.
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444555 678999999999999999999986
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.70 E-value=0.0035 Score=62.31 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999985
No 352
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.68 E-value=0.0034 Score=58.06 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=30.9
Q ss_pred eeeeCCCCCcHHHHHHHHHcCCCC--cccccceeecceeeEE
Q 011082 309 VGLVGMPSAGKSTLLGAISRAKPA--VGHYSFTTLRPNLGNM 348 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~~~~--i~~~~ftTl~p~~g~v 348 (494)
|.|+||+|||||||++.|....+. .-..+.||..|..|.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 789999999999999999876442 2455678877776654
No 353
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.68 E-value=0.0034 Score=56.73 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.1
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..++|+|+||+|||||+++|++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999875
No 354
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.68 E-value=0.0027 Score=65.36 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=27.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+ .++|+|+|||||||||++|...
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4678888888 9999999999999999998543
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.59 E-value=0.0061 Score=58.13 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHH---cC
Q 011082 306 IADVGLVGMPSAGKSTLLGAIS---RA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt---~~ 329 (494)
+..|+|+|+||||||||++.|+ +.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3479999999999999999999 75
No 356
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.56 E-value=0.0046 Score=68.11 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=28.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHH
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
..++|++..+..++|+|++|||||||++.|.
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4688999999999999999999999998654
No 357
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.45 E-value=0.0065 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|+|+|++|||||||++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999875
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.43 E-value=0.007 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|+|+|++|||||||++.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 359
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.32 E-value=0.011 Score=60.35 Aligned_cols=28 Identities=39% Similarity=0.380 Sum_probs=23.4
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHH
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
+.+++..+ .++|+|+||||||||+++|+
T Consensus 17 ~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45566666 67899999999999999997
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.19 E-value=0.0094 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 361
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.16 E-value=0.04 Score=51.25 Aligned_cols=76 Identities=13% Similarity=0.022 Sum_probs=48.8
Q ss_pred cceEEecCCCc-cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 353 IQITVADIPGL-IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 353 ~~~~l~DtPGl-i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+.++++|||+. .. ......+..+|.+|+++..+. ........+...+..+ ...+..+|
T Consensus 68 yD~viiD~p~~~~~---------~~~~~~l~~aD~viiv~~~~~--------~~~~~~~~~~~~l~~~----~~~~~~vv 126 (209)
T 3cwq_A 68 YQNIVIDTQARPED---------EDLEALADGCDLLVIPSTPDA--------LALDALMLTIETLQKL----GNNRFRIL 126 (209)
T ss_dssp CSEEEEEEECCCSS---------SHHHHHHHTSSEEEEEECSSH--------HHHHHHHHHHHHHHHT----CSSSEEEE
T ss_pred CCEEEEeCCCCcCc---------HHHHHHHHHCCEEEEEecCCc--------hhHHHHHHHHHHHHhc----cCCCEEEE
Confidence 67899999986 33 123456778999999988654 3344455555555432 14568889
Q ss_pred EeCCCcCC-h--HHHHHHHHH
Q 011082 432 ANKIDEDG-A--EEVYEELER 449 (494)
Q Consensus 432 lNKiDl~~-~--~e~~~~L~~ 449 (494)
+|++|... . .+..+.+++
T Consensus 127 ~N~~~~~~~~~~~~~~~~l~~ 147 (209)
T 3cwq_A 127 LTIIPPYPSKDGDEARQLLTT 147 (209)
T ss_dssp ECSBCCTTSCHHHHHHHHHHH
T ss_pred EEecCCccchHHHHHHHHHHH
Confidence 99999765 2 344445554
No 362
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.10 E-value=0.0066 Score=63.17 Aligned_cols=25 Identities=28% Similarity=0.158 Sum_probs=22.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
....|+|+|++|||||||+++|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4457999999999999999999875
No 363
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.96 E-value=0.012 Score=53.47 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=23.5
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+......|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3445568999999999999999999864
No 364
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.93 E-value=0.011 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+..|+|+|++|||||||.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34557999999999999999999985
No 365
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.92 E-value=0.011 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|+|+|++||||||+.+.|++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6999999999999999999873
No 366
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.91 E-value=0.014 Score=54.13 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.2
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..+..++|+|+||||||||++.|++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 455668999999999999999999854
No 367
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.90 E-value=0.0069 Score=59.20 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=20.0
Q ss_pred eeeeCCCCCcHHHHHHHHHcC
Q 011082 309 VGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
|+|+|+||+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999985
No 368
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.88 E-value=0.013 Score=54.14 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
..+..|+|+|++|||||||.+.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345579999999999999999998653
No 369
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.86 E-value=0.014 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+.++|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567999999999999999999864
No 370
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.86 E-value=0.013 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|+|+|++||||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999873
No 371
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.84 E-value=0.013 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
+..|+|+|++|||||||++.|+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 372
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.81 E-value=0.011 Score=52.33 Aligned_cols=24 Identities=33% Similarity=0.189 Sum_probs=21.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..++|+|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999975
No 373
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.81 E-value=0.0068 Score=64.80 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=26.1
Q ss_pred EEE-EeeccceeeeeCCCCCcHHHHHHH--HHcC
Q 011082 299 LIL-ELKSIADVGLVGMPSAGKSTLLGA--ISRA 329 (494)
Q Consensus 299 i~l-elk~~~~V~LVG~~nAGKSTLLn~--Lt~~ 329 (494)
+++ .+..+..++|+|+||||||||++. +++.
T Consensus 31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445 677888999999999999999999 5664
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.80 E-value=0.011 Score=60.50 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.1
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+..|+|+|++|||||||+++|++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567999999999999999999985
No 375
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.088 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.5
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+...-|.|.||||+|||+|.++|++.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34557999999999999999999874
No 376
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.74 E-value=0.011 Score=57.83 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=25.2
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+..+..++|+|+||||||||++.|++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45667778999999999999999999875
No 377
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.68 E-value=0.016 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=20.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.67 E-value=0.0058 Score=59.15 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=24.9
Q ss_pred EEEEeec---cceeeeeCCCCCcHHHHHHHHHc
Q 011082 299 LILELKS---IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 299 i~lelk~---~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
++|++.. +..|+|+|++||||||+.+.|.+
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444555 67899999999999999999986
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.61 E-value=0.012 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.0
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..|+|+|++|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999875
No 380
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.50 E-value=0.017 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...|+|+|++|||||||.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999764
No 381
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.44 E-value=0.017 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.2
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|+|+|++|||||||++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999863
No 382
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.17 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..-|.|.||||+|||+|.+++++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 345899999999999999999874
No 383
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.38 E-value=0.011 Score=56.38 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.9
Q ss_pred eeeeCCCCCcHHHHHHHHHcC
Q 011082 309 VGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
|+|+|+||+|||||+++|++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999975
No 384
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.37 E-value=0.02 Score=57.00 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.8
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHH
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
+.+++..+ ..+|+|+||||||||+.+|.
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHH
Confidence 44566655 88999999999999999997
No 385
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.37 E-value=0.02 Score=50.26 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=18.2
Q ss_pred eeeeeCCCCCcHHHHHHHH
Q 011082 308 DVGLVGMPSAGKSTLLGAI 326 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~L 326 (494)
.|+|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 386
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.35 E-value=0.032 Score=58.41 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.9
Q ss_pred ccceeeeeCCCCCcHHHHHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
....|+|+|..++|||+|+|.|.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34589999999999999999765
No 387
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.33 E-value=0.023 Score=53.20 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=23.4
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+..+..++|+|+||||||||+..|++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45667899999999999999999987
No 388
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.28 E-value=0.026 Score=57.52 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=25.6
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+++++..+ .++|+|++|+|||||+++|..
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 356677777 899999999999999999974
No 389
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.26 E-value=0.16 Score=49.62 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=40.0
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEE-EE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VV 431 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-lV 431 (494)
+.++++|||+..... .+...+..+|.+|+|++... ........+...+..+... ...+.+ +|
T Consensus 157 yD~ViiD~p~~~~~~--------~~~~~l~~aD~viiv~~~~~--------~s~~~~~~~~~~l~~~~~~-~~~~~~gvV 219 (307)
T 3end_A 157 TDVVIFDVLGDVVCG--------GFAAPLQHADQAVVVTANDF--------DSIYAMNRIIAAVQAKSKN-YKVRLAGCV 219 (307)
T ss_dssp CSEEEEEECCSSCCG--------GGGGGGGTCSEEEEEECSSH--------HHHHHHHHHHHHHHTTTTT-CCCEEEEEE
T ss_pred CCEEEEeCCCccchH--------HHHHHHHHCCEEEEEecCcH--------HHHHHHHHHHHHHHHhhhc-CCCceEEEE
Confidence 578899998754311 11233567899999987653 3445555555555543211 123433 78
Q ss_pred EeCCCc
Q 011082 432 ANKIDE 437 (494)
Q Consensus 432 lNKiDl 437 (494)
+|+++.
T Consensus 220 ~N~~~~ 225 (307)
T 3end_A 220 ANRSRA 225 (307)
T ss_dssp EESCSC
T ss_pred EecCCc
Confidence 899984
No 390
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.25 E-value=0.022 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+..|+|+|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 391
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.09 E-value=0.28 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.-|.|.|+||+|||+|.+++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 35889999999999999999874
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.06 E-value=0.024 Score=56.89 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|||+|++|||||||++.|.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 393
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.06 E-value=0.013 Score=60.18 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=24.5
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.+..+..|+|+|++|+|||||+++|++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34556668999999999999999999864
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.05 E-value=0.014 Score=56.61 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.9
Q ss_pred eeeeCCCCCcHHHHHHHHHcC
Q 011082 309 VGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
|+|+|+||+|||||+++|++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999975
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.03 E-value=0.026 Score=49.83 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=18.4
Q ss_pred eeeeeCCCCCcHHHHHHHHH
Q 011082 308 DVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt 327 (494)
..+|+|++|+|||||+.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999985
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.01 E-value=0.027 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|+|+|.+||||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 397
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.16 Score=52.91 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..-|.|.||||+|||+|.+++++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999874
No 398
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.88 E-value=0.1 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=19.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+.|+|++|+|||||+++|++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 399
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.86 E-value=0.029 Score=51.65 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=22.6
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+..+..++|+|+||+|||||+..|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999987
No 400
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.83 E-value=0.031 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|.|+|+|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 401
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.81 E-value=0.028 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
...|.|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.80 E-value=0.029 Score=50.98 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
No 403
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.75 E-value=0.03 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|.|.|++||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 404
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.71 E-value=0.035 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|.|+|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999864
No 405
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.71 E-value=0.033 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
++.++|+|++|||||||+..|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 406
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.68 E-value=0.035 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|+|+|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 447999999999999999999875
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.63 E-value=0.03 Score=55.99 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+|+||+|||||+++|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999875
No 408
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.62 E-value=0.037 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
...|.|+|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999975
No 409
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.60 E-value=0.038 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|.|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 410
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.53 E-value=0.036 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|.|+|++||||||+.+.|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 411
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.52 E-value=0.037 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|.|+|++||||||+.+.|+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 412
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.51 E-value=0.041 Score=61.78 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=27.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|. ..+..++|+|+||+||||||+.|.+.
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 355666 66778999999999999999999874
No 413
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.22 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.0
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...-|.|.|+||+|||+|.++|++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 4456999999999999999999975
No 414
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.18 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...-|.|.||||+|||+|.+++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3446899999999999999999875
No 415
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.25 E-value=0.04 Score=54.30 Aligned_cols=24 Identities=21% Similarity=-0.006 Sum_probs=21.1
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...|+|+|++|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999764
No 416
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.21 E-value=0.036 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
...|+|+|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 417
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.42 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...-|.|.|+||+|||+|.++|++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4446899999999999999999874
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.17 E-value=0.044 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.162 Sum_probs=23.8
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+..+..++|+|+||+|||||+..|++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356777899999999999999999886
No 419
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.14 E-value=0.039 Score=62.82 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=27.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..++|++..+..++|+|+|||||||||+.+..
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 45677777788999999999999999999864
No 420
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.12 E-value=0.049 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.9
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|.|+|++||||||+.+.|+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 421
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.10 E-value=0.048 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
...|.|+|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999984
No 422
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.08 E-value=0.05 Score=49.70 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 423
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.05 E-value=0.037 Score=63.18 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHH
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
-+.++|++..+..++|+|.+|||||||++.|.
T Consensus 658 Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999999999999999999853
No 424
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.03 E-value=0.047 Score=50.12 Aligned_cols=24 Identities=33% Similarity=0.237 Sum_probs=21.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+..|+|+|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.97 E-value=0.052 Score=50.32 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 426
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.92 E-value=0.05 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+..|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 44799999999999999999975
No 427
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.88 E-value=0.031 Score=63.07 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=29.0
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHH-HH
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGA-IS 327 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~-Lt 327 (494)
-+.++|++..+..++|+|.+|||||||++. |.
T Consensus 513 L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp EEEEEEEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred cccceEEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence 467899999999999999999999999996 54
No 428
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.84 E-value=0.051 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=22.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..+..|+|.|++||||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35668999999999999999999875
No 429
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=92.81 E-value=0.037 Score=63.05 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=28.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHH
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
-+.++|++..+..++|+|.+|||||||++.|.
T Consensus 640 Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 35688999999999999999999999999853
No 430
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.79 E-value=0.052 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+..|+|+|++||||||+.+.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 431
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.78 E-value=0.056 Score=55.99 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.4
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+.....++|+|++|||||||+++|+..
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4445668999999999999999999753
No 432
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.78 E-value=0.059 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=22.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..++|+|+|||||||||+.+.+.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 788999999999999999999875
No 433
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.76 E-value=0.055 Score=49.98 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 434
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.76 E-value=0.058 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=19.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 435
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.73 E-value=0.057 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+..|.|+|+|||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 436
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.72 E-value=0.042 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
....|+|+|++||||||+.+.|...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999763
No 437
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.68 E-value=0.049 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..|+|+|++||||||+.+.|...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 438
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.60 E-value=0.059 Score=49.82 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999965
No 439
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.57 E-value=0.064 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 440
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.56 E-value=0.061 Score=48.31 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
+.|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 441
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.52 E-value=0.06 Score=48.87 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|+|+|++||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 36999999999999999999875
No 442
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.51 E-value=0.03 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 443
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.45 E-value=0.059 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
No 444
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.44 E-value=0.062 Score=49.85 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt 327 (494)
...+|+|++|||||||+.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 367899999999999999984
No 445
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.39 E-value=0.062 Score=51.61 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|+|+|++|||||||.+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999753
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.39 E-value=0.07 Score=46.99 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 447
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.38 E-value=0.038 Score=59.46 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..+..|+|+|++|||||||+++|++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 34567999999999999999999985
No 448
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.29 E-value=0.066 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 449
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.25 E-value=0.071 Score=47.89 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 450
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.20 E-value=0.071 Score=50.73 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.-|.|+|+||+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 451
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.20 E-value=0.067 Score=54.05 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.8
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..+..+..++|+|+||||||||+..|++.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678889999999999999999999875
No 452
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.18 E-value=0.27 Score=46.94 Aligned_cols=65 Identities=6% Similarity=0.010 Sum_probs=43.5
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
+.++++|+|+... ......+..+|.+|+++.... .....+..+...+..+.. +.+..+|+
T Consensus 145 yD~viiD~pp~~~---------~~~~~~l~~aD~vivv~~~~~--------~s~~~~~~~~~~l~~~~~---~~~~~vv~ 204 (267)
T 3k9g_A 145 YDYIVIDTNPSLD---------VTLKNALLCSDYVIIPMTAEK--------WAVESLDLFNFFVRKLNL---FLPIFLII 204 (267)
T ss_dssp CSEEEEEECSSCS---------HHHHHHHTTCSEEEEEEESCT--------THHHHHHHHHHHHHTTTC---CCCEEEEE
T ss_pred CCEEEEECcCCcc---------HHHHHHHHHCCeEEEEeCCCh--------HHHHHHHHHHHHHHHHhc---cCCEEEEE
Confidence 5688999987543 233455667899999998764 455666666666655432 35677899
Q ss_pred eCCCc
Q 011082 433 NKIDE 437 (494)
Q Consensus 433 NKiDl 437 (494)
|+++.
T Consensus 205 N~~~~ 209 (267)
T 3k9g_A 205 TRFKK 209 (267)
T ss_dssp EEECT
T ss_pred ecccC
Confidence 99853
No 453
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.16 E-value=0.079 Score=46.85 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.3
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+..|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
No 454
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.15 E-value=0.06 Score=48.11 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=16.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|.|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 455
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.13 E-value=0.081 Score=48.32 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|+|+|++||||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 456
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.12 E-value=0.073 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|+|+|++||||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 457
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.07 E-value=0.072 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|+|+|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 458
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.00 E-value=0.23 Score=55.83 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.7
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+.....|.|+|+||+|||||+++|++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 455667999999999999999999986
No 459
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.84 E-value=0.53 Score=40.65 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|.|.|++|+|||+|.++|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999875
No 460
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.72 E-value=0.057 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|.|+|+|||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999864
No 461
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.71 E-value=0.079 Score=53.11 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=26.4
Q ss_pred cccCCCCEEEEE----eCCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 421 EGLSDRPSLVVA----NKIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 421 ~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
..+...|.++++ +.+|......+.+.|.+.. .+..++.+|+
T Consensus 267 ~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH 312 (339)
T 3qkt_A 267 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312 (339)
T ss_dssp HHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred HHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 345677888887 7788766666666666644 2345665554
No 462
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.59 E-value=0.58 Score=48.63 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.-|.|.|+||+|||+|.++|...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.59 E-value=0.091 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.1
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+..|+|+|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999986
No 464
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.56 E-value=0.084 Score=48.85 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 465
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.51 E-value=0.083 Score=49.83 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.7
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+....|.|+|+|||||+|....|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44457889999999999999999863
No 466
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.48 E-value=0.098 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
...|+|+|++||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 467
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.42 E-value=0.11 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=20.8
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHH
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
+..+..++|+|+||+|||||+..++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4566689999999999999976664
No 468
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.39 E-value=0.096 Score=48.68 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|.|+|++||||||+.+.|+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.38 E-value=0.23 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+...-|.|.|+||+|||+|.+++++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999999975
No 470
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.38 E-value=0.099 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..++|+|+||+|||||+++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999875
No 471
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.19 E-value=0.11 Score=48.66 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999975
No 472
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=91.16 E-value=0.19 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=25.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHH
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLL 323 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLL 323 (494)
..++|++..+..++|+|++|||||||+
T Consensus 601 k~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 601 KNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccceEEcCCcEEEEEccCCCChhhhH
Confidence 468899999999999999999999997
No 473
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.15 E-value=0.098 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|.|+|+||||||||.+.|...
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 474
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.08 E-value=0.12 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|.|.|++|+|||||++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999764
No 475
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.07 E-value=0.11 Score=59.95 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.7
Q ss_pred eEEEEEeec-------cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKS-------IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~-------~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|.+.. +..++|+|+||+||||||+.+ +.
T Consensus 773 ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 773 NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 345555554 678999999999999999998 54
No 476
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.06 E-value=0.12 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
...|+|+|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 477
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.93 E-value=0.13 Score=48.42 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
+..|.|+|++||||||+.+.|+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.45 E-value=0.13 Score=54.80 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=25.7
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+..+..++|+|+||+|||||++.|++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5778889999999999999999999875
No 479
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.37 E-value=0.14 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|.|+|+|||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.34 E-value=0.13 Score=46.71 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 481
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.34 E-value=0.14 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999753
No 482
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=90.25 E-value=0.16 Score=54.07 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=27.5
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHc
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.+.+.+...+.+.|+|.+|+||||++++|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4667788899999999999999999999864
No 483
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.25 E-value=0.15 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|.|.|++|+|||||++++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 484
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=90.14 E-value=0.19 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEeeccceeeeeCCCCCcHHHHHHHHH
Q 011082 300 ILELKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 300 ~lelk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
.+++.. ...+|+|+|||||||||.+|.
T Consensus 20 ~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 20 RIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred EEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 334433 467899999999999999985
No 485
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.11 E-value=0.16 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|+|.|++||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 486
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.80 E-value=0.15 Score=46.42 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|.|.|++|+|||||+.+|...
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 487
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.65 E-value=0.16 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...|.|.|+||+|||||+++|.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999874
No 488
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.55 E-value=0.18 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHH
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
+..+..+.|+|++|+|||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 5667789999999999999999664
No 489
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.36 E-value=0.15 Score=45.02 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.|.|.|++|+|||||++.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 490
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=89.29 E-value=0.092 Score=55.81 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=23.4
Q ss_pred EEEEeeccceeeeeCCCCCcHHHHHHHHH
Q 011082 299 LILELKSIADVGLVGMPSAGKSTLLGAIS 327 (494)
Q Consensus 299 i~lelk~~~~V~LVG~~nAGKSTLLn~Lt 327 (494)
+.+++..+ ..+|+|.|||||||||.+|.
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 45566665 78899999999999999984
No 491
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.25 E-value=0.17 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
..|+|+|.+||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999984
No 492
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.15 E-value=0.19 Score=48.80 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR 328 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~ 328 (494)
.|.|+|+|||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 493
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.12 E-value=0.2 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.9
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...+.|+|+||+|||+|+++|...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 494
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.90 E-value=0.2 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|.|.|+||+|||||+++|.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 495
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.78 E-value=0.21 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..|.|.|+||+|||||+++|+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999864
No 496
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.76 E-value=2.1 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+.|+|+||+|||+|.++|...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 497
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.73 E-value=0.22 Score=47.02 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
...-|.|.|+||+|||+|.++|...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999864
No 498
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.36 E-value=0.22 Score=45.52 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+.|.|++|+|||||++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 499
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.32 E-value=0.23 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+.|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 500
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.29 E-value=0.22 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.+.|.|++|+||||++++|++.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
Done!