Your job contains 1 sequence.
>011083
MVLSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLIS
KMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNML
QIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGL
LIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHR
LVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELD
SVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWE
GLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQR
FWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRL
ALATNLGRTTLEEQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011083
(494 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2123757 - symbol:AT4G32910 species:3702 "Arabi... 1659 1.2e-170 1
UNIPROTKB|J3QL54 - symbol:NUP85 "Nuclear pore complex pro... 268 1.8e-20 1
UNIPROTKB|B4DMQ3 - symbol:NUP85 "cDNA FLJ53138, highly si... 268 2.5e-20 1
UNIPROTKB|Q9BW27 - symbol:NUP85 "Nuclear pore complex pro... 268 2.9e-20 1
MGI|MGI:3046173 - symbol:Nup85 "nucleoporin 85" species:1... 268 2.9e-20 1
RGD|1311942 - symbol:Nup85 "nucleoporin 85" species:10116... 267 3.8e-20 1
UNIPROTKB|F1PFE9 - symbol:NUP85 "Uncharacterized protein"... 253 1.4e-18 1
UNIPROTKB|F1RVX6 - symbol:NUP85 "Uncharacterized protein"... 248 5.2e-18 1
UNIPROTKB|F1NRW5 - symbol:NUP85 "Uncharacterized protein"... 243 2.0e-17 1
UNIPROTKB|Q3ZC98 - symbol:NUP85 "Nuclear pore complex pro... 241 3.2e-17 1
UNIPROTKB|Q6DK84 - symbol:nup85 "Nuclear pore complex pro... 239 5.3e-17 1
ZFIN|ZDB-GENE-040801-145 - symbol:nup85 "nucleoporin 85" ... 236 1.1e-16 1
UNIPROTKB|Q68FJ0 - symbol:nup85 "Nuclear pore complex pro... 227 1.1e-15 1
UNIPROTKB|F5H0W7 - symbol:NUP85 "Nuclear pore complex pro... 196 7.9e-15 1
FB|FBgn0034310 - symbol:Nup75 "Nucleoporin 75kD" species:... 168 3.8e-09 1
WB|WBGene00003788 - symbol:npp-2 species:6239 "Caenorhabd... 154 1.1e-07 1
DICTYBASE|DDB_G0285415 - symbol:nup85 "nucleoporin 85" sp... 140 3.5e-07 2
>TAIR|locus:2123757 [details] [associations]
symbol:AT4G32910 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010048 "vernalization response"
evidence=RCA] [GO:0010074 "maintenance of meristem identity"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0050826 "response
to freezing" evidence=RCA] GO:GO:0005635 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0051028 EMBL:AL031804 EMBL:AL161582 EMBL:AF361625
EMBL:AY081256 EMBL:BT002244 IPI:IPI00524221 RefSeq:NP_567908.1
UniGene:At.28705 ProteinModelPortal:Q8RXH2 STRING:Q8RXH2
PaxDb:Q8RXH2 PRIDE:Q8RXH2 EnsemblPlants:AT4G32910.1 GeneID:829427
KEGG:ath:AT4G32910 TAIR:At4g32910 eggNOG:NOG275863
HOGENOM:HOG000005812 InParanoid:Q8RXH2 KO:K14304 OMA:HRLVYAQ
PhylomeDB:Q8RXH2 ProtClustDB:CLSN2689724 Genevestigator:Q8RXH2
InterPro:IPR011502 Pfam:PF07575 Uniprot:Q8RXH2
Length = 716
Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
Identities = 312/490 (63%), Positives = 388/490 (79%)
Query: 7 NNQEYWS-LSERITCLLFHLILFYDRMLYSFISYSLVVID--QTENGLVEAVAVLISKMP 63
++ YW ++ ++ +++ ++L+ SY L + +TENGLVEAVAVLISKMP
Sbjct: 229 DDPRYWEVMASALSVGWLEIVV---KLLHLHGSYQLDQLGHRETENGLVEAVAVLISKMP 285
Query: 64 RMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIM 123
RMRP+LE GK GEC AKPDFMK E+W++QI KLECS FW+QCAH QT+EGLRNML+IM
Sbjct: 286 RMRPQLEDGKFGECSAAKPDFMKTRERWQSQITKLECSAFWVQCAHHQTREGLRNMLKIM 345
Query: 124 LGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIG 183
+GN + L TC+WMEL+++H LY+RPFT GL+ M+ LAQKC+Q KP+ SH+L+ LLIG
Sbjct: 346 IGNADCLRAATCNWMELFVSHLLYLRPFTKGLDGMHSLAQKCVQSKPVNTSHKLLRLLIG 405
Query: 184 ILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVY 243
ILGEN EVVLAECSK FG WMV HA+E+LTAGS + + L+HEE+ LGGI+MEELHRLVY
Sbjct: 406 ILGENTEVVLAECSKEFGSWMVAHAMELLTAGSEEGEVLVHEEQRKLGGINMEELHRLVY 465
Query: 244 AQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVS 303
AQVLSSH LTWQIAPIYL SC KQG+GLLE+L Y+QPV NQ+L+K+LEICRLYEL +VS
Sbjct: 466 AQVLSSHALTWQIAPIYLASCEKQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVS 525
Query: 304 SNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLI 363
+ +MKI+G+++WKHG+KGSG++WLQQARDE L+ IAQQ+FDSVG+S+SDE+ +QWEGL+
Sbjct: 526 AKLMKISGVHHWKHGRKGSGIFWLQQARDENCLSVIAQQLFDSVGKSLSDESLKQWEGLV 585
Query: 364 QLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWL 423
+LLGSE + +GGL+FLH YRDFK+SL + DGKT DAA +AVE L+SLMK+P TPQRFWL
Sbjct: 586 ELLGSESQISGGLDFLHKYRDFKRSLKVVHDGKTIDAAHEAVERLVSLMKSPSTPQRFWL 645
Query: 424 PLLHDSLKLLNWEERPXXXXXXXXXXXXXXXXXSIARLRPDFIEADLPPHALSSVRLALA 483
PLLHDSLKLLNW ER SIARLRP FIE++L A+ SVRLALA
Sbjct: 646 PLLHDSLKLLNWPERSLLNVTQTNLMLNKLQELSIARLRPGFIESELSAQAVGSVRLALA 705
Query: 484 TNLGRTTLEE 493
TNLGR LEE
Sbjct: 706 TNLGRAFLEE 715
>UNIPROTKB|J3QL54 [details] [associations]
symbol:NUP85 "Nuclear pore complex protein Nup85"
species:9606 "Homo sapiens" [GO:0030032 "lamellipodium assembly"
evidence=IEA] [GO:0048246 "macrophage chemotaxis" evidence=IEA]
EMBL:AC022211 InterPro:IPR011502 Pfam:PF07575 HGNC:HGNC:8734
ChiTaRS:NUP85 ProteinModelPortal:J3QL54 Ensembl:ENST00000579324
Uniprot:J3QL54
Length = 544
Score = 268 (99.4 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 112/421 (26%), Positives = 173/421 (41%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ W + + L+ STF T L ++L+IMLG+ L L +W +
Sbjct: 146 WQHWHEECERYLQDSTF-------ATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVT 198
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 199 RLLYSNP-TVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALS 257
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L +HP WQ+ Y
Sbjct: 258 NWWFVAHLTDLL---DH---CKLLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDY 311
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 312 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRL 371
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 372 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 427
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + + DAA L+SLM + P+ FW+ LL D+L LL E+
Sbjct: 428 KYREFHR---MYGEKRFADAA----SLLLSLMTSRIAPRSFWMTLLTDALPLL---EQKQ 477
Query: 441 XXXXXXXXXXXXXXXXSIARLRPDFIEAD--------LPPHALSSVRLALATNLGRTTLE 492
+ RP E+D + + +RL+LA NL R +
Sbjct: 478 VIFSAEQTYELMRCLEDLTSRRPVHGESDTEQLQDDDIETTKVEMLRLSLARNLARAIIR 537
Query: 493 E 493
E
Sbjct: 538 E 538
>UNIPROTKB|B4DMQ3 [details] [associations]
symbol:NUP85 "cDNA FLJ53138, highly similar to Homo sapiens
pericentrin 1 (PCNT1), mRNA" species:9606 "Homo sapiens"
[GO:0030032 "lamellipodium assembly" evidence=IEA] [GO:0048246
"macrophage chemotaxis" evidence=IEA] GO:GO:0030032 GO:GO:0048246
EMBL:AC022211 InterPro:IPR011502 Pfam:PF07575 HOVERGEN:HBG059778
UniGene:Hs.362817 HGNC:HGNC:8734 ChiTaRS:NUP85 EMBL:AK297574
IPI:IPI01014661 STRING:B4DMQ3 Ensembl:ENST00000541827
Uniprot:B4DMQ3
Length = 610
Score = 268 (99.4 bits), Expect = 2.5e-20, P = 2.5e-20
Identities = 112/421 (26%), Positives = 173/421 (41%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ W + + L+ STF T L ++L+IMLG+ L L +W +
Sbjct: 212 WQHWHEECERYLQDSTF-------ATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVT 264
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 265 RLLYSNP-TVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALS 323
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L +HP WQ+ Y
Sbjct: 324 NWWFVAHLTDLL---DH---CKLLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDY 377
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 378 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRL 437
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 438 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 493
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + + DAA L+SLM + P+ FW+ LL D+L LL E+
Sbjct: 494 KYREFHR---MYGEKRFADAA----SLLLSLMTSRIAPRSFWMTLLTDALPLL---EQKQ 543
Query: 441 XXXXXXXXXXXXXXXXSIARLRPDFIEAD--------LPPHALSSVRLALATNLGRTTLE 492
+ RP E+D + + +RL+LA NL R +
Sbjct: 544 VIFSAEQTYELMRCLEDLTSRRPVHGESDTEQLQDDDIETTKVEMLRLSLARNLARAIIR 603
Query: 493 E 493
E
Sbjct: 604 E 604
>UNIPROTKB|Q9BW27 [details] [associations]
symbol:NUP85 "Nuclear pore complex protein Nup85"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0030032 "lamellipodium assembly" evidence=IEA] [GO:0048246
"macrophage chemotaxis" evidence=IEA] [GO:0000777 "condensed
chromosome kinetochore" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0031080 "nuclear pore outer ring" evidence=NAS;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000776 "kinetochore"
evidence=IDA] [GO:0000087 "M phase of mitotic cell cycle"
evidence=TAS] [GO:0000236 "mitotic prometaphase" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0005635 "nuclear
envelope" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0005975 "carbohydrate metabolic process" evidence=TAS]
[GO:0008645 "hexose transport" evidence=TAS] [GO:0010827
"regulation of glucose transport" evidence=TAS] [GO:0015758
"glucose transport" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] [GO:0055085 "transmembrane transport" evidence=TAS]
Reactome:REACT_111217 Reactome:REACT_15518 GO:GO:0005829
Reactome:REACT_116125 Reactome:REACT_6900 Reactome:REACT_115566
GO:GO:0016032 Reactome:REACT_21300 GO:GO:0005819 GO:GO:0044281
GO:GO:0015031 GO:GO:0005975 GO:GO:0031965 GO:GO:0019221
GO:GO:0015758 GO:GO:0010827 GO:GO:0055085 EMBL:CH471099
GO:GO:0030032 GO:GO:0051028 GO:GO:0000236 GO:GO:0000777
GO:GO:0048246 GO:GO:0031080 eggNOG:NOG275863 KO:K14304
InterPro:IPR011502 Pfam:PF07575 CTD:79902 HOGENOM:HOG000230494
HOVERGEN:HBG059778 OMA:SICKIMA OrthoDB:EOG4229J7 EMBL:AF514995
EMBL:AF498261 EMBL:AK022611 EMBL:AL833893 EMBL:BC000697
IPI:IPI00790530 RefSeq:NP_079120.1 UniGene:Hs.362817
ProteinModelPortal:Q9BW27 IntAct:Q9BW27 MINT:MINT-1408017
STRING:Q9BW27 PhosphoSite:Q9BW27 DMDM:74733394 PaxDb:Q9BW27
PRIDE:Q9BW27 Ensembl:ENST00000245544 GeneID:79902 KEGG:hsa:79902
UCSC:uc002jng.1 GeneCards:GC17P073201 HGNC:HGNC:8734 MIM:170285
neXtProt:NX_Q9BW27 PharmGKB:PA142671241 InParanoid:Q9BW27
ChiTaRS:NUP85 GenomeRNAi:79902 NextBio:69751 ArrayExpress:Q9BW27
Bgee:Q9BW27 CleanEx:HS_NUP85 Genevestigator:Q9BW27 Uniprot:Q9BW27
Length = 656
Score = 268 (99.4 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 112/421 (26%), Positives = 173/421 (41%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ W + + L+ STF T L ++L+IMLG+ L L +W +
Sbjct: 258 WQHWHEECERYLQDSTF-------ATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L +HP WQ+ Y
Sbjct: 370 NWWFVAHLTDLL---DH---CKLLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + + DAA L+SLM + P+ FW+ LL D+L LL E+
Sbjct: 540 KYREFHR---MYGEKRFADAA----SLLLSLMTSRIAPRSFWMTLLTDALPLL---EQKQ 589
Query: 441 XXXXXXXXXXXXXXXXSIARLRPDFIEAD--------LPPHALSSVRLALATNLGRTTLE 492
+ RP E+D + + +RL+LA NL R +
Sbjct: 590 VIFSAEQTYELMRCLEDLTSRRPVHGESDTEQLQDDDIETTKVEMLRLSLARNLARAIIR 649
Query: 493 E 493
E
Sbjct: 650 E 650
>MGI|MGI:3046173 [details] [associations]
symbol:Nup85 "nucleoporin 85" species:10090 "Mus musculus"
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISA]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=ISA] [GO:0006810 "transport" evidence=IEA]
[GO:0006935 "chemotaxis" evidence=IDA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=ISA]
[GO:0030032 "lamellipodium assembly" evidence=IDA] [GO:0031080
"nuclear pore outer ring" evidence=ISO] [GO:0031727 "CCR2 chemokine
receptor binding" evidence=ISA] [GO:0048246 "macrophage chemotaxis"
evidence=IDA] [GO:0051028 "mRNA transport" evidence=IEA]
MGI:MGI:3046173 GO:GO:0005886 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0019221 GO:GO:0030032 GO:GO:0000922
GO:GO:0051028 GO:GO:0000777 GO:GO:0048246 GO:GO:0031727
GO:GO:0031080 EMBL:AL645470 eggNOG:NOG275863 KO:K14304
InterPro:IPR011502 Pfam:PF07575 CTD:79902
GeneTree:ENSGT00390000000204 HOGENOM:HOG000230494
HOVERGEN:HBG059778 OMA:SICKIMA OrthoDB:EOG4229J7 EMBL:AF498263
EMBL:AK017632 EMBL:BC079856 IPI:IPI00461532 RefSeq:NP_001002929.3
UniGene:Mm.4379 ProteinModelPortal:Q8R480 STRING:Q8R480
PhosphoSite:Q8R480 PaxDb:Q8R480 PRIDE:Q8R480
Ensembl:ENSMUST00000021085 Ensembl:ENSMUST00000140986
Ensembl:ENSMUST00000144473 GeneID:445007 KEGG:mmu:445007
UCSC:uc007mhx.2 InParanoid:Q8R480 NextBio:410914 Bgee:Q8R480
CleanEx:MM_NUP85 Genevestigator:Q8R480 Uniprot:Q8R480
Length = 656
Score = 268 (99.4 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 115/421 (27%), Positives = 177/421 (42%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ WR + + L+ +TF A+ + L ++ +IMLG+ L L +W +
Sbjct: 258 WQHWREECERHLQDNTF---AANPR----LESLCKIMLGDEAALLEQKELLSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPIDLHFYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLL---DH---CRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVKSICKILAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LGS + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGSAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + R G DAA L+SLM + P+ FW+ LL D+L LL E+
Sbjct: 540 KYREFHRLYGEKRFG---DAA----SLLLSLMTSQIAPRSFWMTLLTDALPLL---EQKQ 589
Query: 441 XXXXXXXXXXXXXXXXSIARLRPDFIEAD--------LPPHALSSVRLALATNLGRTTLE 492
+A RP+ E D + + +RLALA NL R +
Sbjct: 590 VIFSAEQTYELMRCLEDLASGRPECGEPDAQRLQDDDIETTKVEMLRLALARNLARAIIR 649
Query: 493 E 493
E
Sbjct: 650 E 650
>RGD|1311942 [details] [associations]
symbol:Nup85 "nucleoporin 85" species:10116 "Rattus norvegicus"
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000922 "spindle pole" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006935 "chemotaxis" evidence=ISO] [GO:0015031
"protein transport" evidence=IEA] [GO:0030032 "lamellipodium
assembly" evidence=IEA;ISO] [GO:0031080 "nuclear pore outer ring"
evidence=ISO;ISS] [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0048246 "macrophage chemotaxis" evidence=IEA;ISO] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0000776 "kinetochore"
evidence=ISO] RGD:1311942 GO:GO:0005737 GO:GO:0015031 GO:GO:0031965
GO:GO:0030032 GO:GO:0000922 GO:GO:0051028 GO:GO:0000777
GO:GO:0048246 GO:GO:0031080 eggNOG:NOG275863 KO:K14304
InterPro:IPR011502 Pfam:PF07575 CTD:79902
GeneTree:ENSGT00390000000204 HOGENOM:HOG000230494
HOVERGEN:HBG059778 OMA:SICKIMA OrthoDB:EOG4229J7 EMBL:BC098031
IPI:IPI00370340 RefSeq:NP_001020572.1 UniGene:Rn.198900
STRING:Q4QQS8 PRIDE:Q4QQS8 Ensembl:ENSRNOT00000005035 GeneID:287830
KEGG:rno:287830 InParanoid:Q4QQS8 NextBio:627107
Genevestigator:Q4QQS8 Uniprot:Q4QQS8
Length = 656
Score = 267 (99.0 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 114/421 (27%), Positives = 174/421 (41%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ WR + + L+ +TF H L ++ +IMLG+ L L +W +
Sbjct: 258 WQHWREECERHLQDNTFAAN-PH------LESLCKIMLGDEATLLEQKELMSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPTDLHLYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLL---DH---CRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVGSICKILAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + R G DAA L+SLM + P+ FW+ LL D+L LL E+
Sbjct: 540 KYREFHRLYGEKRFG---DAA----SLLLSLMTSQIAPRSFWMTLLTDALPLL---EQKQ 589
Query: 441 XXXXXXXXXXXXXXXXSIARLRPDFIEAD--------LPPHALSSVRLALATNLGRTTLE 492
+A RP+ E D + + +RLALA NL R +
Sbjct: 590 VIFSAEQTYELMRCLEDLASRRPECGEPDAQRLQDDDIETTKVEMLRLALARNLARAIIR 649
Query: 493 E 493
E
Sbjct: 650 E 650
>UNIPROTKB|F1PFE9 [details] [associations]
symbol:NUP85 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048246 "macrophage chemotaxis" evidence=IEA]
[GO:0031080 "nuclear pore outer ring" evidence=IEA] [GO:0030032
"lamellipodium assembly" evidence=IEA] [GO:0000776 "kinetochore"
evidence=IEA] GO:GO:0000776 GO:GO:0030032 GO:GO:0048246
GO:GO:0031080 InterPro:IPR011502 Pfam:PF07575
GeneTree:ENSGT00390000000204 OMA:SICKIMA EMBL:AAEX03006299
Ensembl:ENSCAFT00000007614 Uniprot:F1PFE9
Length = 656
Score = 253 (94.1 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 112/421 (26%), Positives = 175/421 (41%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ W + + L+ STF H L ++ +I+LG+ L L +W +
Sbjct: 258 WQHWHEECERHLQDSTF-AASPH------LESLCKILLGDEAALLEQKELLNNWYHFLVT 310
Query: 144 HFLYIRPFTVGLE-SMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGP 202
LY P ++ +Y + + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSHPTVKPIDLHLYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALSN 370
Query: 203 W-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYL 261
W V H ++L H L + + G +M E L YA L +H WQ+ Y
Sbjct: 371 WWFVAHLTDLL---DH---CKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDYF 424
Query: 262 TSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKG 321
C + G LE+ + + P+ Q LK L IC ++ +I KI M ++ + G
Sbjct: 425 DYCPELGRVSLELHIERIPLSTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRLG 484
Query: 322 SGVYWLQQARDEARLNRIAQQMF-DSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
S + W +A+D A ++ + D R F + LI LG + L FL
Sbjct: 485 SALSWSIRAKDAAFATLVSDRFLKDYCERGC----FSDLD-LIDNLGPAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + R DAA L+SLM + P+ FW+ LL D+L LL EE+
Sbjct: 540 KYREFHRFYGEKR---LADAA----SLLLSLMTSQIAPRSFWVILLIDALPLL--EEKEV 590
Query: 441 XXXXXXXXXXXXXXXXSIARLRPDFIEA--------DLPPHALSSVRLALATNLGRTTLE 492
+R RP + E D+ L +RLALA NLGR ++
Sbjct: 591 VFSAEQTYELMRCLEDFASR-RPVWREPGVQRLQKEDVENTKLEMLRLALARNLGRAIIK 649
Query: 493 E 493
E
Sbjct: 650 E 650
>UNIPROTKB|F1RVX6 [details] [associations]
symbol:NUP85 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048246 "macrophage chemotaxis" evidence=IEA]
[GO:0031080 "nuclear pore outer ring" evidence=IEA] [GO:0030032
"lamellipodium assembly" evidence=IEA] [GO:0000776 "kinetochore"
evidence=IEA] GO:GO:0000776 GO:GO:0030032 GO:GO:0048246
GO:GO:0031080 KO:K14304 InterPro:IPR011502 Pfam:PF07575
GeneTree:ENSGT00390000000204 OMA:SICKIMA EMBL:CU928896
RefSeq:XP_003131259.1 Ensembl:ENSSSCT00000018732 GeneID:100526070
KEGG:ssc:100526070 Uniprot:F1RVX6
Length = 656
Score = 248 (92.4 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 108/418 (25%), Positives = 171/418 (40%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ W + + L+ TF H L ++ +IMLG+ L L +W +
Sbjct: 258 WQHWHEECERHLQDGTF-ASSPH------LESLCKIMLGDEAALLEQKELLSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L +++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSCP-TVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLL---DH---CKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P+ Q LK L +C ++ +I KI M ++ +
Sbjct: 424 FDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + R DAA L+SLM + P+ FW+ LL D+L LL ++
Sbjct: 540 KYREFHRLYGEKR---FVDAA----SLLLSLMTSQIAPRSFWMTLLTDALPLLEQKQVIF 592
Query: 441 XXXXXXXXXXXXXXXXSI--ARLRPD---FIEADLPPHALSSVRLALATNLGRTTLEE 493
S A PD + D+ + +R+ LA NL R+ ++E
Sbjct: 593 SAEQTYELMRCLEDLISERPAHGEPDAQQLQDDDIETTKVEMLRIGLARNLARSIIKE 650
>UNIPROTKB|F1NRW5 [details] [associations]
symbol:NUP85 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000776 "kinetochore" evidence=IEA] [GO:0030032
"lamellipodium assembly" evidence=IEA] [GO:0031080 "nuclear pore
outer ring" evidence=IEA] [GO:0048246 "macrophage chemotaxis"
evidence=IEA] GO:GO:0000776 GO:GO:0030032 GO:GO:0048246
GO:GO:0031080 InterPro:IPR011502 Pfam:PF07575
GeneTree:ENSGT00390000000204 OMA:SICKIMA EMBL:AADN02053651
IPI:IPI00602276 Ensembl:ENSGALT00000012947 ArrayExpress:F1NRW5
Uniprot:F1NRW5
Length = 675
Score = 243 (90.6 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 100/413 (24%), Positives = 164/413 (39%)
Query: 88 WEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIAH 144
W+ W EC + +Q + + ++ +I+LG+ N + L W +
Sbjct: 280 WQHWHE-----ECQRY-LQDGTFASNSHMESICKILLGDENAILEKKELMTTWYHFLVTR 333
Query: 145 FLYIRPFTVGLE-SMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGP- 202
LY P +E Y + + L + L +L+ + V+ EC
Sbjct: 334 LLYSHPTVKPMELRFYAQSSMDMFLGEESNPEPLDTILMAAFEFELHQVIKECRYSVALS 393
Query: 203 --WMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L SH WQ+ Y
Sbjct: 394 NWWFVAHLTDLL---DH---CKLLQSHNLYFGSNMREFLLLEYASGLFSHHSLWQLGVDY 447
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 448 FDHCPEYGRVYLELHIERIPLNTEQKALKVLRICEQRQMHEQVRSICKIMAMKALRNNRL 507
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A I+ + + + + LI LG + L FL
Sbjct: 508 GSALSWSIRAKDAAFATLISDRFL----KDYCERGYFSDLDLIDNLGPSMLLSDRLTFLG 563
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + R ++AAR L+ LM P FW+ LL D+L LL +E
Sbjct: 564 KYREFHRLYGEKR---FSEAARL----LLMLMTAHIAPCSFWMTLLTDALPLLEQKEVIF 616
Query: 441 XXXXXXXXXXXXXXXXSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEE 493
+ + F + D+ + +RLALA NL R ++E
Sbjct: 617 SAEQTYELMRCLEDLTARKLDKQKFQDDDVETMKVEMLRLALARNLARVIVKE 669
>UNIPROTKB|Q3ZC98 [details] [associations]
symbol:NUP85 "Nuclear pore complex protein Nup85"
species:9913 "Bos taurus" [GO:0005819 "spindle" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000777 "condensed
chromosome kinetochore" evidence=IEA] [GO:0048246 "macrophage
chemotaxis" evidence=IEA] [GO:0031080 "nuclear pore outer ring"
evidence=IEA] [GO:0030032 "lamellipodium assembly" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0031965 "nuclear membrane"
evidence=IEA] GO:GO:0005737 GO:GO:0005819 GO:GO:0015031
GO:GO:0031965 GO:GO:0030032 GO:GO:0051028 GO:GO:0000777
GO:GO:0048246 GO:GO:0031080 eggNOG:NOG275863 KO:K14304
InterPro:IPR011502 Pfam:PF07575 EMBL:BT030744 EMBL:BC102703
IPI:IPI00708572 RefSeq:NP_001029559.1 UniGene:Bt.8317 STRING:Q3ZC98
PRIDE:Q3ZC98 Ensembl:ENSBTAT00000034688 GeneID:510540
KEGG:bta:510540 CTD:79902 GeneTree:ENSGT00390000000204
HOGENOM:HOG000230494 HOVERGEN:HBG059778 InParanoid:Q3ZC98
OMA:SICKIMA OrthoDB:EOG4229J7 NextBio:20869500 Uniprot:Q3ZC98
Length = 656
Score = 241 (89.9 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 105/418 (25%), Positives = 171/418 (40%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ W + + L+ TF + L ++ +++LG+ L L +W +
Sbjct: 258 WQHWHEECERHLQDGTF-------ASNPHLESLCKVLLGDDAALLEHKELLSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY +P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSQP-TVKPMDLHLYAQSSLDLFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L H L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLL---DH---CKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P+ Q LK L +C ++ +I K+ M ++ +
Sbjct: 424 CDHCPELGRVSLELHIERIPLTTEQKALKVLRVCEQRQMTEQVRSICKVLAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPX 440
YR+F + + DAA L+SLM + P+ FW+ LL D+L LL ++
Sbjct: 540 KYREFHRLY---GEKCFVDAA----SLLLSLMTSQIAPRSFWMTLLTDALPLLEQKQVIF 592
Query: 441 XXXXXXXXXXXXXXXXSIARL--RPD---FIEADLPPHALSSVRLALATNLGRTTLEE 493
S L PD + D+ + +RLALA NL R+ ++E
Sbjct: 593 SAEQTYELLRCLEDLTSGRPLCGEPDAQQLQDDDIETTKVEILRLALARNLARSIIKE 650
>UNIPROTKB|Q6DK84 [details] [associations]
symbol:nup85 "Nuclear pore complex protein Nup85"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0031080 "nuclear
pore outer ring" evidence=ISS] GO:GO:0015031 GO:GO:0031965
GO:GO:0051028 GO:GO:0031080 eggNOG:NOG275863 KO:K14304
InterPro:IPR011502 Pfam:PF07575 CTD:79902
GeneTree:ENSGT00390000000204 HOGENOM:HOG000230494
HOVERGEN:HBG059778 OrthoDB:EOG4229J7 EMBL:BC074592
RefSeq:NP_001004817.1 UniGene:Str.8414 STRING:Q6DK84
Ensembl:ENSXETT00000056747 GeneID:448067 KEGG:xtr:448067
Xenbase:XB-GENE-1008050 InParanoid:Q6DK84 OMA:XVSILSA Bgee:Q6DK84
Uniprot:Q6DK84
Length = 653
Score = 239 (89.2 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 106/424 (25%), Positives = 174/424 (41%)
Query: 83 DFMKAWEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWM 138
+F W+ WR + + L+ TF + + + ++++G+ + L W
Sbjct: 252 EFELKWQHWREECERHLQNGTF-------SSNPHMEVVCRVLVGDEEVILEKRDLMTTWY 304
Query: 139 ELYIAHFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAEC 196
++ L+ P TV ++ AQ + L ++ L +L+ +I V+ E
Sbjct: 305 HFLVSRLLFKHP-TVKPTELHFYAQSSLDMFLAGNSSPEPLDNILLAAFEFDIHQVIKEF 363
Query: 197 S-KGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQ 255
S W V H ++L H L + + G +M E L YA L SH WQ
Sbjct: 364 SIVSSNWWFVAHLTDLL---DH---CQLFQAHNLYFGANMREFLLLDYASGLFSHHSLWQ 417
Query: 256 IAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW 315
+ Y C G LE+ + + P++ + LK L IC ++ +I K M +
Sbjct: 418 LGVDYFDYCPNLGHVYLELHMERVPLNTEKKALKALRICEKRQMTEQVRSICKTMAMQSL 477
Query: 316 KHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDE-NFRQWEGLIQLLGSEPKTAG 374
+G+ GS + W +A+D A I+ + + S+ NF + LI LGS +
Sbjct: 478 CNGRLGSALSWSIRAKDAAFATLISDRFL----KEYSERGNFTDLD-LIDNLGSAMLLSD 532
Query: 375 GLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLN 434
L FL YR+F + Q + +A L+SLM P FWL LL D+L LL
Sbjct: 533 RLTFLGKYREFHRMYSQ-------EQFSEAASLLLSLMTARIAPCSFWLTLLLDALPLLE 585
Query: 435 WEERPXXXXXXXXXXXXXXXXXSIARL---RPDFIEAD--LPPHALSSVRLALATNLGRT 489
+++ A+L PD I+ + + +RLALA NL R
Sbjct: 586 -QKQVIFSAEQTYELMRCLEDRMAAKLDSTSPDEIQKQDSVDSTKIEMLRLALARNLARA 644
Query: 490 TLEE 493
+ E
Sbjct: 645 IVTE 648
>ZFIN|ZDB-GENE-040801-145 [details] [associations]
symbol:nup85 "nucleoporin 85" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND] [GO:0031080
"nuclear pore outer ring" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0031965 "nuclear membrane"
evidence=IEA] ZFIN:ZDB-GENE-040801-145 GO:GO:0015031 GO:GO:0031965
GO:GO:0051028 GO:GO:0031080 eggNOG:NOG275863 KO:K14304
InterPro:IPR011502 Pfam:PF07575 CTD:79902 HOGENOM:HOG000230494
HOVERGEN:HBG059778 OrthoDB:EOG4229J7 EMBL:BC078318 IPI:IPI00511893
RefSeq:NP_001003625.1 UniGene:Dr.98 STRING:Q6DBY0 PRIDE:Q6DBY0
GeneID:445231 KEGG:dre:445231 NextBio:20831993 Uniprot:Q6DBY0
Length = 649
Score = 236 (88.1 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 102/419 (24%), Positives = 170/419 (40%)
Query: 83 DFMKAWEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWM 138
+F W W + + L+ TF + L + +I+LG+ + + L W
Sbjct: 251 EFDVKWRHWHEECDRCLQDHTF-------ASSAELETLCKILLGDEDVILEQKDLMSTWY 303
Query: 139 ELYIAHFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAEC 196
++ L+ P T+ ++ AQ + L P A L +L+ ++ V+ +C
Sbjct: 304 HFLVSRLLFTHP-TIKPPDLHYYAQSSMNMFLGPRATPEPLDIILLSAFEFDLHQVIKDC 362
Query: 197 SKGFGPW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQ 255
S W V H ++L H LL + G ++ E L YA L +H WQ
Sbjct: 363 SIALNNWWFVAHLTDLL---DHCK--LLQSHNLHFGS-NLREFLVLEYASGLFTHHSLWQ 416
Query: 256 IAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW 315
+A YL C + G LE+ + + P+D + K L IC ++ +I KI
Sbjct: 417 LAVDYLDHCPEFGRVYLELQIERVPLDTERKANKVLRICEDRQMSEQVRSICKIMAKRAL 476
Query: 316 KHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGG 375
++ + GS + W +A+D A I+++ S F + ++ LG +
Sbjct: 477 RNNRLGSALSWSIRAKDAALATLISERFLQDYSNKGS---FTDLD-VLDNLGPAMLLSDR 532
Query: 376 LEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNW 435
L FL YR+F + + + +DAA+ L+SLM P+ W+ LL D+L LL
Sbjct: 533 LTFLGKYREFHRLY---GENRFSDAAKL----LLSLMMAKIAPRSLWMTLLTDALPLLEQ 585
Query: 436 EERPXXXXXXXXXXXXXXXXXSIARLRPDFI-EADLPPHALSSVRLALATNLGRTTLEE 493
EE S + E DL +R+ALA NL ++E
Sbjct: 586 EEVIFTVDQTYELMSCLEELNSGTKDSNQMEQEEDLESTKTELLRVALARNLATAIVKE 644
>UNIPROTKB|Q68FJ0 [details] [associations]
symbol:nup85 "Nuclear pore complex protein Nup85"
species:8355 "Xenopus laevis" [GO:0031080 "nuclear pore outer ring"
evidence=ISS] GO:GO:0015031 GO:GO:0031965 GO:GO:0051028
GO:GO:0031080 KO:K14304 InterPro:IPR011502 Pfam:PF07575 CTD:79902
HOVERGEN:HBG059778 EMBL:BC079790 RefSeq:NP_001087440.1
UniGene:Xl.41587 GeneID:447264 KEGG:xla:447264
Xenbase:XB-GENE-1008056 Uniprot:Q68FJ0
Length = 653
Score = 227 (85.0 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 106/424 (25%), Positives = 169/424 (39%)
Query: 83 DFMKAWEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWM 138
+F W+ WR + + L+ TF H + + +++LG+ L L W
Sbjct: 251 EFELKWQHWREECERHLQNGTFSSN-VHMEA------VCRVLLGDEEVLLEKRDLMTTWY 303
Query: 139 ELYIAHFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAEC 196
++ L+ P TV ++ AQ + L + L +L+ +I V+ E
Sbjct: 304 HFLVSRLLFKHP-TVKPTELHFYAQSSLDMFLAGDSCPEPLDNILLAAFEFDIHQVIKEF 362
Query: 197 S-KGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQ 255
S W V H ++L H L + + G +M E L YA L SH WQ
Sbjct: 363 SIVSSNWWFVAHLTDLL---DH---CQLFQAHNLYFGANMREFLLLDYASGLFSHHSLWQ 416
Query: 256 IAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW 315
+ Y C G L++ + + P+ + LK L IC ++ +I K M +
Sbjct: 417 LGVDYFDYCPNLGREYLKLHMERIPLSTEKKALKALRICEQRQMTEQVRSICKTMAMQSL 476
Query: 316 KHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGG 375
+ + GS + W +A+D A I+ + NF + LI LGS +
Sbjct: 477 CNRRLGSALSWSIRAKDAAFATLISDRFLKEY---CERGNFTDLD-LIDNLGSAMLLSDR 532
Query: 376 LEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNW 435
L FL YR+F + Q + +A L+SLM P FWL LL D+L LL
Sbjct: 533 LTFLGKYREFHRMYSQ-------EQFSEAASLLLSLMTARIAPCSFWLTLLLDALPLLE- 584
Query: 436 EERPXXXXXXXXXXXXXXXXXSIARLR---PDFIE---ADLPPHALSSVRLALATNLGRT 489
+++ A+L PD I+ + + + +RLALA NL R
Sbjct: 585 QKQVIFSAEQTYELMRCLEDRMAAKLESTSPDEIQKQDSSIDNTKVEMLRLALARNLARA 644
Query: 490 TLEE 493
+ E
Sbjct: 645 IVTE 648
>UNIPROTKB|F5H0W7 [details] [associations]
symbol:NUP85 "Nuclear pore complex protein Nup85"
species:9606 "Homo sapiens" [GO:0030032 "lamellipodium assembly"
evidence=IEA] [GO:0048246 "macrophage chemotaxis" evidence=IEA]
GO:GO:0030032 GO:GO:0048246 EMBL:AC022211 InterPro:IPR011502
Pfam:PF07575 HGNC:HGNC:8734 ChiTaRS:NUP85 IPI:IPI00888760
Ensembl:ENST00000540768 UCSC:uc002jnh.1 ArrayExpress:F5H0W7
Bgee:F5H0W7 Uniprot:F5H0W7
Length = 259
Score = 196 (74.1 bits), Expect = 7.9e-15, P = 7.9e-15
Identities = 74/267 (27%), Positives = 111/267 (41%)
Query: 235 MEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEIC 294
M E L YA L +HP WQ+ Y C + G LE+ + + P++ Q LK L IC
Sbjct: 1 MREFLLLEYASGLFAHPSLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRIC 60
Query: 295 RLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDE 354
++ +I KI M ++ + GS + W +A+D A A + D R +
Sbjct: 61 EQRQMTEQVRSICKILAMKAVRNNRLGSALSWSIRAKDAA----FATLVSDRFLRDYCER 116
Query: 355 NFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKN 414
LI LG + L FL YR+F + + + DAA L+SLM +
Sbjct: 117 GCFSDLDLIDNLGPAMMLSDRLTFLGKYREFHR---MYGEKRFADAA----SLLLSLMTS 169
Query: 415 PCTPQRFWLPLLHDSLKLLNWEERPXXXXXXXXXXXXXXXXXSIARLRPDFIEAD----- 469
P+ FW+ LL D+L LL E+ + RP E+D
Sbjct: 170 RIAPRSFWMTLLTDALPLL---EQKQVIFSAEQTYELMRCLEDLTSRRPVHGESDTEQLQ 226
Query: 470 ---LPPHALSSVRLALATNLGRTTLEE 493
+ + +RL+LA NL R + E
Sbjct: 227 DDDIETTKVEMLRLSLARNLARAIIRE 253
>FB|FBgn0034310 [details] [associations]
symbol:Nup75 "Nucleoporin 75kD" species:7227 "Drosophila
melanogaster" [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0031080 "nuclear pore outer ring" evidence=ISS] [GO:0017056
"structural constituent of nuclear pore" evidence=ISS] [GO:0007184
"SMAD protein import into nucleus" evidence=IMP] [GO:0006607
"NLS-bearing substrate import into nucleus" evidence=IMP]
GO:GO:0007184 eggNOG:NOG275863 InterPro:IPR011502 Pfam:PF07575
EMBL:EF057923 ProteinModelPortal:A1YK00 STRING:A1YK00 PaxDb:A1YK00
PRIDE:A1YK00 FlyBase:FBgn0034310 InParanoid:A1YK00
OrthoDB:EOG4HX3G6 Bgee:A1YK00 Uniprot:A1YK00
Length = 668
Score = 168 (64.2 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 62/289 (21%), Positives = 131/289 (45%)
Query: 149 RPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSK-GFGPWMVTH 207
+PF + + + L + C+ L+P + ++ ++ ++ + + + K W TH
Sbjct: 319 KPFELKIAAAKWLNRWCL-LRPEREQCSMNRMVSQLMDHDLRLFIYDAQKLNDTHWFSTH 377
Query: 208 AIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVY---AQVLSSHPLTWQIAPIYLTSC 264
I+++ H + +++N+ ++ H ++Y + +++SH + WQ+ YL C
Sbjct: 378 LIDLI---HHCGQLKSYFDQNNIDLPALR--HSMIYEYGSYLMTSHNM-WQLGIDYLDCC 431
Query: 265 IKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGV 324
++G +E+LL + + + K + + R L SV I K+ ++ + + G+ +
Sbjct: 432 KQEGQAAIELLLPRITLRSERQATKLINLARQRGLISVEREICKVLSKRSYDNERYGNAL 491
Query: 325 YWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRD 384
W +++D + +A D + + S I +G + L FL Y +
Sbjct: 492 EWAIRSKDVLLVTAVA----DFILKHYSKTGCMLCPDTIANVGGRMFASPRLVFLSKYFE 547
Query: 385 FKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLL 433
F + +T D A E L++L+++ TP FW LL DS+ LL
Sbjct: 548 FYEFY------RTRDFL-SASELLVNLLESKITPDYFWPSLLIDSMPLL 589
>WB|WBGene00003788 [details] [associations]
symbol:npp-2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0006997 "nucleus organization" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0040017 GO:GO:0040035 GO:GO:0006997 EMBL:Z75713
eggNOG:NOG275863 KO:K14304 InterPro:IPR011502 Pfam:PF07575
GeneTree:ENSGT00390000000204 PIR:T24318 RefSeq:NP_492256.1
ProteinModelPortal:Q22078 IntAct:Q22078 MINT:MINT-227059
STRING:Q22078 PaxDb:Q22078 EnsemblMetazoa:T01G9.4.1
EnsemblMetazoa:T01G9.4.2 GeneID:172611 KEGG:cel:CELE_T01G9.4
CTD:172611 WormBase:T01G9.4 HOGENOM:HOG000017307 InParanoid:Q22078
OMA:IPLIMMP NextBio:876251 Uniprot:Q22078
Length = 598
Score = 154 (59.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 73/338 (21%), Positives = 141/338 (41%)
Query: 112 TQEGLRNMLQIMLGNTNNLCTLTCH----WMELYIAHFLYIR-PFTVGLESMYGLAQKCI 166
+ E + + +++LG L ++ W ++ F+ ++ PF +E + LA +C
Sbjct: 232 SNENFKYLTKLLLGEERYLVSMASRIFDTWWH-FLPFFVLVKNPFAGHVE-LIELADECR 289
Query: 167 QL------KPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQAD 220
L + A + + LI N + ++A PW+ H ++++ H++
Sbjct: 290 TLFVGEEEEEGAKENDVFWCLISKDDINFQQLIAS-----NPWLAVHLVDLI----HKST 340
Query: 221 TLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQP 280
L E + M ++H L YA VL SH W+I YL +C +G+ LE +
Sbjct: 341 --LDPEFE-----VMRKMHMLDYASVLISHSPLWEIGAGYLIACGTEGLLRLETHIEGLH 393
Query: 281 VDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIA 340
++ +++ + LEIC + L+ S + K G S + W + + ++
Sbjct: 394 IEDDEMAEQLLEICEEHRLEDAKSCVTNTMTFRYLKQGHWSSTLAWALKTGSKKTIDWTV 453
Query: 341 QQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDA 400
++ VG S DE L + + L FL++Y+ F K + G D
Sbjct: 454 SRI---VGSSSKDE-LAALRVLSSITNHSVLSLPSLTFLYSYQRFVKMM---HCGDVLDC 506
Query: 401 ARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEER 438
V+ LI L+ P P +++ L + ++ + R
Sbjct: 507 ----VQHLIPLIMMPDVPTQYYYDLFDYLITIIKEDGR 540
>DICTYBASE|DDB_G0285415 [details] [associations]
symbol:nup85 "nucleoporin 85" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0285415 GenomeReviews:CM000153_GR GO:GO:0015031
EMBL:AAFI02000079 GO:GO:0031965 GO:GO:0005643 GO:GO:0051028
eggNOG:NOG275863 KO:K14304 InterPro:IPR011502 Pfam:PF07575
RefSeq:XP_638280.1 PRIDE:Q54NA0 EnsemblProtists:DDB0235247
GeneID:8625088 KEGG:ddi:DDB_G0285415 InParanoid:Q54NA0 OMA:CILIARE
Uniprot:Q54NA0
Length = 890
Score = 140 (54.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 51/291 (17%), Positives = 124/291 (42%)
Query: 58 LISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWI-QCAHRQTQEGL 116
++S +P + + G G + + W KW + K+ + Q E L
Sbjct: 440 ILSSIPLKKKSINGG--GGAPLYPNEHLIQWNKWHQETQKILSQYIESGSSSTNQVDENL 497
Query: 117 RNMLQIMLGNTNNLCTLTCH-WMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASH 175
+++I+LG+ + + TC+ +++L +++ L++ +T + L +C Q + A
Sbjct: 498 LPIVKILLGDQQTIMS-TCNSFLQLVVSNILFVE-YTTSTTQLRQLFTQCYQT--IQAPT 553
Query: 176 RLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISM 235
+ + + +++++ L + K W+ H ++L + L + E L I
Sbjct: 554 TVDKIFLSFATKDLDITLKKIFKHSPAWLAVHLSDLLYHHPYVMRKLPNSE-SQLTNI-- 610
Query: 236 EELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICR 295
E + Q L+S I YL G+ +++ + +QP+ + +K L+ +
Sbjct: 611 REYLLSDFGQSLASDSSLLSIGCNYLKYVKNGGLEMIDQFISRQPIHFEKNAIKMLD--K 668
Query: 296 LYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDS 346
++I K+ + ++K + + + WL A D + + ++ + ++
Sbjct: 669 WATSVETKNSIYKMLSLQDFKRKRYAASLNWLMLANDNSHITLLSNYLLEN 719
Score = 59 (25.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 407 SLISLMKNPCTPQRFWLPLLHDSLKLL 433
SL + K+ P+RFWL LL D + LL
Sbjct: 806 SLCLMFKDRVIPKRFWLRLLIDCVPLL 832
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 494 477 0.00079 119 3 11 22 0.49 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 624 (66 KB)
Total size of DFA: 323 KB (2162 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.92u 0.13s 40.05t Elapsed: 00:00:02
Total cpu time: 39.92u 0.13s 40.05t Elapsed: 00:00:02
Start: Mon May 20 18:07:59 2013 End: Mon May 20 18:08:01 2013