BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011083
(494 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXH2|NUP85_ARATH Nuclear pore complex protein Nup85 OS=Arabidopsis thaliana GN=NUP85
PE=2 SV=1
Length = 716
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/448 (71%), Positives = 385/448 (85%)
Query: 46 QTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWI 105
+TENGLVEAVAVLISKMPRMRP+LE GK GEC AKPDFMK E+W++QI KLECS FW+
Sbjct: 268 ETENGLVEAVAVLISKMPRMRPQLEDGKFGECSAAKPDFMKTRERWQSQITKLECSAFWV 327
Query: 106 QCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKC 165
QCAH QT+EGLRNML+IM+GN + L TC+WMEL+++H LY+RPFT GL+ M+ LAQKC
Sbjct: 328 QCAHHQTREGLRNMLKIMIGNADCLRAATCNWMELFVSHLLYLRPFTKGLDGMHSLAQKC 387
Query: 166 IQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHE 225
+Q KP+ SH+L+ LLIGILGEN EVVLAECSK FG WMV HA+E+LTAGS + + L+HE
Sbjct: 388 VQSKPVNTSHKLLRLLIGILGENTEVVLAECSKEFGSWMVAHAMELLTAGSEEGEVLVHE 447
Query: 226 ERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQ 285
E+ LGGI+MEELHRLVYAQVLSSH LTWQIAPIYL SC KQG+GLLE+L Y+QPV NQ
Sbjct: 448 EQRKLGGINMEELHRLVYAQVLSSHALTWQIAPIYLASCEKQGLGLLELLFYRQPVQENQ 507
Query: 286 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFD 345
+L+K+LEICRLYEL +VS+ +MKI+G+++WKHG+KGSG++WLQQARDE L+ IAQQ+FD
Sbjct: 508 MLIKSLEICRLYELSNVSAKLMKISGVHHWKHGRKGSGIFWLQQARDENCLSVIAQQLFD 567
Query: 346 SVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAV 405
SVG+S+SDE+ +QWEGL++LLGSE + +GGL+FLH YRDFK+SL + DGKT DAA +AV
Sbjct: 568 SVGKSLSDESLKQWEGLVELLGSESQISGGLDFLHKYRDFKRSLKVVHDGKTIDAAHEAV 627
Query: 406 ESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDF 465
E L+SLMK+P TPQRFWLPLLHDSLKLLNW ER LLNV QTNL+LNKLQELSIARLRP F
Sbjct: 628 ERLVSLMKSPSTPQRFWLPLLHDSLKLLNWPERSLLNVTQTNLMLNKLQELSIARLRPGF 687
Query: 466 IEADLPPHALSSVRLALATNLGRTTLEE 493
IE++L A+ SVRLALATNLGR LEE
Sbjct: 688 IESELSAQAVGSVRLALATNLGRAFLEE 715
>sp|Q8R480|NUP85_MOUSE Nuclear pore complex protein Nup85 OS=Mus musculus GN=Nup85 PE=1
SV=1
Length = 656
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 114/419 (27%), Positives = 181/419 (43%), Gaps = 39/419 (9%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ WR + + L+ +TF L ++ +IMLG+ L L +W +
Sbjct: 258 WQHWREECERHLQDNTF-------AANPRLESLCKIMLGDEAALLEQKELLSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPIDLHFYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLLD------HCRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVKSICKILAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LGS + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGSAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPL 440
YR+F + + R G A L+SLM + P+ FW+ LL D+L LL +++ +
Sbjct: 540 KYREFHRLYGEKRFG-------DAASLLLSLMTSQIAPRSFWMTLLTDALPLLE-QKQVI 591
Query: 441 LNVLQTNLLLNKLQELSIARL---RPD---FIEADLPPHALSSVRLALATNLGRTTLEE 493
+ QT L+ L++L+ R PD + D+ + +RLALA NL R + E
Sbjct: 592 FSAEQTYELMRCLEDLASGRPECGEPDAQRLQDDDIETTKVEMLRLALARNLARAIIRE 650
>sp|Q9BW27|NUP85_HUMAN Nuclear pore complex protein Nup85 OS=Homo sapiens GN=NUP85 PE=1
SV=1
Length = 656
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 183/423 (43%), Gaps = 47/423 (11%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ W + + L+ STF T L ++L+IMLG+ L L +W +
Sbjct: 258 WQHWHEECERYLQDSTF-------ATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L L + + G +M E L YA L +HP WQ+ Y
Sbjct: 370 NWWFVAHLTDLLDHCK------LLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPL 440
YR+F + + + DAA L+SLM + P+ FW+ LL D+L LL +++ +
Sbjct: 540 KYREFHR---MYGEKRFADAA----SLLLSLMTSRIAPRSFWMTLLTDALPLLE-QKQVI 591
Query: 441 LNVLQTNLLLNKLQELSIAR----------LRPDFIEADLPPHALSSVRLALATNLGRTT 490
+ QT L+ L++L+ R L+ D IE + +RL+LA NL R
Sbjct: 592 FSAEQTYELMRCLEDLTSRRPVHGESDTEQLQDDDIETT----KVEMLRLSLARNLARAI 647
Query: 491 LEE 493
+ E
Sbjct: 648 IRE 650
>sp|Q4QQS8|NUP85_RAT Nuclear pore complex protein Nup85 OS=Rattus norvegicus GN=Nup85
PE=2 SV=1
Length = 656
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 180/419 (42%), Gaps = 39/419 (9%)
Query: 88 WEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT---LTCHWMELYIA 143
W+ WR + + L+ +TF L ++ +IMLG+ L L +W +
Sbjct: 258 WQHWREECERHLQDNTF-------AANPHLESLCKIMLGDEATLLEQKELMSNWYHFLVT 310
Query: 144 HFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
LY P TV ++ AQ + L ++ L +L+ +I V+ ECS
Sbjct: 311 RLLYSNP-TVKPTDLHLYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALS 369
Query: 202 PW-MVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIY 260
W V H ++L L + + G +M E L YA L +H WQ+ Y
Sbjct: 370 NWWFVAHLTDLLD------HCRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDY 423
Query: 261 LTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKK 320
C + G LE+ + + P++ Q LK L IC ++ +I KI M ++ +
Sbjct: 424 FDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVGSICKILAMKAVRNNRL 483
Query: 321 GSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLH 380
GS + W +A+D A A + D R + LI LG + L FL
Sbjct: 484 GSALSWSIRAKDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLG 539
Query: 381 NYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPL 440
YR+F + + R G A L+SLM + P+ FW+ LL D+L LL +++ +
Sbjct: 540 KYREFHRLYGEKRFG-------DAASLLLSLMTSQIAPRSFWMTLLTDALPLLE-QKQVI 591
Query: 441 LNVLQTNLLLNKLQELSIARL---RPD---FIEADLPPHALSSVRLALATNLGRTTLEE 493
+ QT L+ L++L+ R PD + D+ + +RLALA NL R + E
Sbjct: 592 FSAEQTYELMRCLEDLASRRPECGEPDAQRLQDDDIETTKVEMLRLALARNLARAIIRE 650
>sp|Q3ZC98|NUP85_BOVIN Nuclear pore complex protein Nup85 OS=Bos taurus GN=NUP85 PE=2 SV=1
Length = 656
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 177/409 (43%), Gaps = 38/409 (9%)
Query: 104 WIQCAHRQTQEG-------LRNMLQIMLGNTNNLCT---LTCHWMELYIAHFLYIRPFTV 153
W + R Q+G L ++ +++LG+ L L +W + LY +P TV
Sbjct: 261 WHEECERHLQDGTFASNPHLESLCKVLLGDDAALLEHKELLSNWYHFLVTRLLYSQP-TV 319
Query: 154 GLESMYGLAQKCIQL--KPMAASHRLMGLLIGILGENIEVVLAECSKGFGPW-MVTHAIE 210
++ AQ + L ++ L +L+ +I V+ ECS W V H +
Sbjct: 320 KPMDLHLYAQSSLDLFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALSNWWFVAHLTD 379
Query: 211 VLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMG 270
+L L + + G +M E L YA L +H WQ+ Y C + G
Sbjct: 380 LLDHCK------LLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDYCDHCPELGRV 433
Query: 271 LLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA 330
LE+ + + P+ Q LK L +C ++ +I K+ M ++ + GS + W +A
Sbjct: 434 SLELHIERIPLTTEQKALKVLRVCEQRQMTEQVRSICKVLAMKAVRNNRLGSALSWSIRA 493
Query: 331 RDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLL 390
+D A A + D R + LI LG + L FL YR+F +
Sbjct: 494 KDAA----FATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLGKYREFHR--- 546
Query: 391 QIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLL 450
+ DAA L+SLM + P+ FW+ LL D+L LL +++ + + QT LL
Sbjct: 547 LYGEKCFVDAA----SLLLSLMTSQIAPRSFWMTLLTDALPLLE-QKQVIFSAEQTYELL 601
Query: 451 NKLQELSIARL---RPD---FIEADLPPHALSSVRLALATNLGRTTLEE 493
L++L+ R PD + D+ + +RLALA NL R+ ++E
Sbjct: 602 RCLEDLTSGRPLCGEPDAQQLQDDDIETTKVEILRLALARNLARSIIKE 650
>sp|Q6DBY0|NUP85_DANRE Nuclear pore complex protein Nup85 OS=Danio rerio GN=nup85 PE=2
SV=1
Length = 649
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 112/454 (24%), Positives = 191/454 (42%), Gaps = 43/454 (9%)
Query: 49 NGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAK-LECSTFWIQC 107
+ + + + L+ MP P AG + +F W W + + L+ TF
Sbjct: 225 SSVFKRMDTLLQTMPIFNP---AGA-----QTLTEFDVKWRHWHEECDRCLQDHTF---- 272
Query: 108 AHRQTQEGLRNMLQIMLGNTNNLC---TLTCHWMELYIAHFLYIRPFTVGLESMYGLAQK 164
+ L + +I+LG+ + + L W ++ L+ P T+ ++ AQ
Sbjct: 273 ---ASSAELETLCKILLGDEDVILEQKDLMSTWYHFLVSRLLFTHP-TIKPPDLHYYAQS 328
Query: 165 CIQ--LKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPW-MVTHAIEVLTAGSHQADT 221
+ L P A L +L+ ++ V+ +CS W V H ++L
Sbjct: 329 SMNMFLGPRATPEPLDIILLSAFEFDLHQVIKDCSIALNNWWFVAHLTDLLDHCKLLQSH 388
Query: 222 LLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPV 281
LH G ++ E L YA L +H WQ+A YL C + G LE+ + + P+
Sbjct: 389 NLH------FGSNLREFLVLEYASGLFTHHSLWQLAVDYLDHCPEFGRVYLELQIERVPL 442
Query: 282 DHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQ 341
D + K L IC ++ +I KI ++ + GS + W +A+D A I++
Sbjct: 443 DTERKANKVLRICEDRQMSEQVRSICKIMAKRALRNNRLGSALSWSIRAKDAALATLISE 502
Query: 342 QMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAA 401
+ S + ++ LG + L FL YR+F + + + +DAA
Sbjct: 503 RFLQDYSNKGSFTDL----DVLDNLGPAMLLSDRLTFLGKYREFHR---LYGENRFSDAA 555
Query: 402 RQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARL 461
+ L+SLM P+ W+ LL D+L LL EE + V QT L++ L+EL+
Sbjct: 556 KL----LLSLMMAKIAPRSLWMTLLTDALPLLEQEE-VIFTVDQTYELMSCLEELNSGTK 610
Query: 462 RPDFI--EADLPPHALSSVRLALATNLGRTTLEE 493
+ + E DL +R+ALA NL ++E
Sbjct: 611 DSNQMEQEEDLESTKTELLRVALARNLATAIVKE 644
>sp|Q6DK84|NUP85_XENTR Nuclear pore complex protein Nup85 OS=Xenopus tropicalis GN=nup85
PE=2 SV=1
Length = 653
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 179/423 (42%), Gaps = 38/423 (8%)
Query: 83 DFMKAWEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLC---TLTCHWM 138
+F W+ WR + + L+ TF + + + ++++G+ + L W
Sbjct: 252 EFELKWQHWREECERHLQNGTF-------SSNPHMEVVCRVLVGDEEVILEKRDLMTTWY 304
Query: 139 ELYIAHFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAEC 196
++ L+ P TV ++ AQ + L ++ L +L+ +I V+ E
Sbjct: 305 HFLVSRLLFKHP-TVKPTELHFYAQSSLDMFLAGNSSPEPLDNILLAAFEFDIHQVIKEF 363
Query: 197 S-KGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQ 255
S W V H ++L L + + G +M E L YA L SH WQ
Sbjct: 364 SIVSSNWWFVAHLTDLLDHCQ------LFQAHNLYFGANMREFLLLDYASGLFSHHSLWQ 417
Query: 256 IAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW 315
+ Y C G LE+ + + P++ + LK L IC ++ +I K M +
Sbjct: 418 LGVDYFDYCPNLGHVYLELHMERVPLNTEKKALKALRICEKRQMTEQVRSICKTMAMQSL 477
Query: 316 KHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGG 375
+G+ GS + W +A+D A I+ + NF + LI LGS +
Sbjct: 478 CNGRLGSALSWSIRAKDAAFATLISDRFLKEYSER---GNFTDLD-LIDNLGSAMLLSDR 533
Query: 376 LEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNW 435
L FL YR+F + Q + +A L+SLM P FWL LL D+L LL
Sbjct: 534 LTFLGKYREFHRMYSQ-------EQFSEAASLLLSLMTARIAPCSFWLTLLLDALPLLE- 585
Query: 436 EERPLLNVLQTNLLLNKLQELSIARL---RPDFIEA--DLPPHALSSVRLALATNLGRTT 490
+++ + + QT L+ L++ A+L PD I+ + + +RLALA NL R
Sbjct: 586 QKQVIFSAEQTYELMRCLEDRMAAKLDSTSPDEIQKQDSVDSTKIEMLRLALARNLARAI 645
Query: 491 LEE 493
+ E
Sbjct: 646 VTE 648
>sp|Q68FJ0|NUP85_XENLA Nuclear pore complex protein Nup85 OS=Xenopus laevis GN=nup85 PE=2
SV=1
Length = 653
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 177/424 (41%), Gaps = 39/424 (9%)
Query: 83 DFMKAWEKWRAQIAK-LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLC---TLTCHWM 138
+F W+ WR + + L+ TF + + + +++LG+ L L W
Sbjct: 251 EFELKWQHWREECERHLQNGTF-------SSNVHMEAVCRVLLGDEEVLLEKRDLMTTWY 303
Query: 139 ELYIAHFLYIRPFTVGLESMYGLAQKCIQ--LKPMAASHRLMGLLIGILGENIEVVLAEC 196
++ L+ P TV ++ AQ + L + L +L+ +I V+ E
Sbjct: 304 HFLVSRLLFKHP-TVKPTELHFYAQSSLDMFLAGDSCPEPLDNILLAAFEFDIHQVIKEF 362
Query: 197 S-KGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQ 255
S W V H ++L L + + G +M E L YA L SH WQ
Sbjct: 363 SIVSSNWWFVAHLTDLLDHCQ------LFQAHNLYFGANMREFLLLDYASGLFSHHSLWQ 416
Query: 256 IAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW 315
+ Y C G L++ + + P+ + LK L IC ++ +I K M +
Sbjct: 417 LGVDYFDYCPNLGREYLKLHMERIPLSTEKKALKALRICEQRQMTEQVRSICKTMAMQSL 476
Query: 316 KHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGG 375
+ + GS + W +A+D A I+ + NF + LI LGS +
Sbjct: 477 CNRRLGSALSWSIRAKDAAFATLISDRFLKEY---CERGNFTDLD-LIDNLGSAMLLSDR 532
Query: 376 LEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNW 435
L FL YR+F + Q + +A L+SLM P FWL LL D+L LL
Sbjct: 533 LTFLGKYREFHRMYSQ-------EQFSEAASLLLSLMTARIAPCSFWLTLLLDALPLLE- 584
Query: 436 EERPLLNVLQTNLLLNKLQELSIARLR---PDFI---EADLPPHALSSVRLALATNLGRT 489
+++ + + QT L+ L++ A+L PD I ++ + + +RLALA NL R
Sbjct: 585 QKQVIFSAEQTYELMRCLEDRMAAKLESTSPDEIQKQDSSIDNTKVEMLRLALARNLARA 644
Query: 490 TLEE 493
+ E
Sbjct: 645 IVTE 648
>sp|Q54NA0|NUP85_DICDI Nuclear pore complex protein nup85 OS=Dictyostelium discoideum
GN=nup85 PE=3 SV=1
Length = 890
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 86/473 (18%), Positives = 187/473 (39%), Gaps = 62/473 (13%)
Query: 58 LISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQC---AHRQTQE 114
++S +P + + G + + + W KW + K+ +I+ + Q E
Sbjct: 440 ILSSIPLKKKSINGGGGAPLYPN--EHLIQWNKWHQETQKILSQ--YIESGSSSTNQVDE 495
Query: 115 GLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAAS 174
L +++I+LG+ + + +++L +++ L++ +T + L +C Q + A
Sbjct: 496 NLLPIVKILLGDQQTIMSTCNSFLQLVVSNILFVE-YTTSTTQLRQLFTQCYQ--TIQAP 552
Query: 175 HRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGIS 234
+ + + +++++ L + K W+ H ++L + L + E +
Sbjct: 553 TTVDKIFLSFATKDLDITLKKIFKHSPAWLAVHLSDLLYHHPYVMRKLPNSESQ---LTN 609
Query: 235 MEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEIC 294
+ E + Q L+S I YL G+ +++ + +QP+ + +K L+
Sbjct: 610 IREYLLSDFGQSLASDSSLLSIGCNYLKYVKNGGLEMIDQFISRQPIHFEKNAIKMLD-- 667
Query: 295 RLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDE 354
+ ++I K+ + ++K + + + WL A D + + ++ + ++ ++ E
Sbjct: 668 KWATSVETKNSIYKMLSLQDFKRKRYAASLNWLMLANDNSHITLLSNYLLEN---QLNSE 724
Query: 355 NFRQWEGLIQ--------------------------------LLGSEPK----TAGGLEF 378
+ L++ ++ E K L F
Sbjct: 725 FLNDLQSLLEKNDEIDCNINNNNNNNNNNNSNNRISGNNNNNMIIDENKFEITNNSELIF 784
Query: 379 LHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEER 438
L YR+ SL + R + ++ SL + K+ P+RFWL LL D + LL +
Sbjct: 785 LIRYRELI-SLWKER------SFKEYSSSLCLMFKDRVIPKRFWLRLLIDCVPLLE-SLK 836
Query: 439 PLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTL 491
L Q LLL E I D ++ + +R ALA NL ++ +
Sbjct: 837 NLYFTYQDTLLLQSCLEEIIQSHLFDQYSFNISNQDIQILRSALARNLAKSII 889
>sp|Q6FCE6|HSCA_ACIAD Chaperone protein HscA homolog OS=Acinetobacter sp. (strain ADP1)
GN=hscA PE=3 SV=1
Length = 620
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 145 FLYIRPFTVGLESMYGLAQKCIQLK---PMAASHRLMGLLIGILGENIEVV-----LAEC 196
L + P ++GLE+M GL ++ I P+A G I VV L E
Sbjct: 387 LLDVTPLSLGLETMGGLVERLISRNTAIPVARRQEFTTYQDGQSAMLIHVVQGERDLVEH 446
Query: 197 SKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQI 256
+ G + V H I +TAG + + + D L +S +E V AQ+ I
Sbjct: 447 CRSLGRF-VLHGIPPMTAGQARIEVTFQVDADGLLTVSAQETTSGVKAQI--------DI 497
Query: 257 APIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWK 316
P Y S LLE + + D N L+ ++ EL+++ + AG+ + +
Sbjct: 498 KPSYGLSATDTERLLLEGFQHAEE-DKNLRHLQETKVEAQRELEALEQALKNDAGLLDIQ 556
Query: 317 H 317
Sbjct: 557 Q 557
>sp|Q136H4|SYS_RHOPS Serine--tRNA ligase OS=Rhodopseudomonas palustris (strain BisB5)
GN=serS PE=3 SV=1
Length = 434
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 29 YDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAW 88
Y R S I+ SL+ +D+T +A+L S+ + R + ++GE KAK D +A
Sbjct: 18 YTRRGLSPIADSLIKLDETRR-----IAILASEQAQARRNAASKEIGEAKKAK-DNARA- 70
Query: 89 EKWRAQIAKLECSTFWIQCAHRQTQEGLRNML 120
E A++A+L+ + ++ A + E L+ L
Sbjct: 71 EVLMAEVAELKTTMPALEAAVKDADEALKTAL 102
>sp|A7FQ49|Y018_CLOB1 UPF0182 protein CLB_0018 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=CLB_0018 PE=3 SV=1
Length = 893
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 428 DSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLA 481
D+L W+ R L+ ++NK+ ++ + +PDF+ D+PP+ ++++LA
Sbjct: 404 DALNPNTWQNRHLIYTHGFGAVMNKVNSVT-SEGQPDFVIKDIPPYNKTNIKLA 456
>sp|A5HXQ7|Y011_CLOBH UPF0182 protein CBO0011/CLC_0020 OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=CBO0011 PE=3
SV=1
Length = 893
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 428 DSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLA 481
D+L W+ R L+ ++NK+ ++ + +PDF+ D+PP+ ++++LA
Sbjct: 404 DALNPNTWQNRHLIYTHGFGAVMNKVNSVT-SEGQPDFVIKDIPPYNKTNIKLA 456
>sp|Q9LND8|ADSL2_ARATH Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana
GN=At1g06100 PE=2 SV=1
Length = 299
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 408 LISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIE 467
+++++ N C + L H S KL W E P L + L +SI R F +
Sbjct: 63 ILAILTNLCITFSYHRNLTHRSFKLPKWLEYPFAYSALLALQGDPLDWVSIHRFHHQFTD 122
Query: 468 ADLPPHA 474
+D PH+
Sbjct: 123 SDRDPHS 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,188,007
Number of Sequences: 539616
Number of extensions: 7142887
Number of successful extensions: 15519
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15498
Number of HSP's gapped (non-prelim): 15
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)