Query 011083
Match_columns 494
No_of_seqs 124 out of 166
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f3f_C Nucleoporin NUP85; stru 100.0 1.4E-64 4.7E-69 535.5 23.3 308 3-338 237-570 (570)
2 3bg1_B Nucleoporin NUP145; NPC 97.7 0.0013 4.4E-08 68.8 17.7 245 8-319 177-440 (442)
3 3jro_A Fusion protein of prote 97.4 0.004 1.4E-07 69.1 17.9 246 13-320 491-750 (753)
4 3iko_C Nucleoporin NUP84; NPC, 95.6 0.12 4E-06 54.3 13.4 229 9-280 178-453 (460)
5 2qx5_A Nucleoporin NIC96; mRNA 93.8 4.3 0.00015 44.3 20.4 358 7-420 151-570 (661)
6 2pm7_A Protein WEB1, protein t 92.5 0.69 2.4E-05 47.5 11.2 140 114-265 204-363 (399)
7 2wpv_A GET4, UPF0363 protein Y 71.0 33 0.0011 33.7 11.6 84 265-349 91-178 (312)
8 2pm7_A Protein WEB1, protein t 65.7 56 0.0019 33.1 12.4 43 300-342 242-286 (399)
9 2vkj_A TM1634; membrane protei 51.9 16 0.00053 29.2 4.0 39 311-349 60-101 (106)
10 3lpz_A GET4 (YOR164C homolog); 49.8 1.2E+02 0.0042 30.0 11.3 85 265-350 93-181 (336)
11 3mkq_A Coatomer beta'-subunit; 49.7 48 0.0016 35.6 9.2 38 304-341 681-718 (814)
12 3mkq_B Coatomer subunit alpha; 49.0 18 0.00062 32.6 4.7 48 288-339 22-69 (177)
13 3mzk_B Protein transport prote 32.7 1.2E+02 0.004 31.3 8.3 40 113-152 217-267 (441)
14 2v5f_A Prolyl 4-hydroxylase su 29.9 33 0.0011 26.9 2.9 27 305-331 6-32 (104)
15 3gw4_A Uncharacterized protein 29.2 89 0.003 26.3 6.0 49 284-332 46-94 (203)
16 3lpz_A GET4 (YOR164C homolog); 29.1 1.2E+02 0.004 30.0 7.3 51 301-351 32-89 (336)
17 3ro3_A PINS homolog, G-protein 26.0 1.2E+02 0.0042 23.7 6.0 45 286-330 71-115 (164)
18 1xi4_A Clathrin heavy chain; a 25.6 2.2E+02 0.0076 34.1 9.7 83 250-342 1061-1143(1630)
19 3ro3_A PINS homolog, G-protein 25.5 1.2E+02 0.0042 23.7 5.9 46 286-331 111-156 (164)
No 1
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=100.00 E-value=1.4e-64 Score=535.52 Aligned_cols=308 Identities=14% Similarity=0.170 Sum_probs=241.5
Q ss_pred cccCCCCCchHhHHHHHHHhhcchHHHHHHHhhccCc-chh-hhhhhhhHHHHHHHHHHHhCCCCCcccccccccccccc
Q 011083 3 LSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISY-SLV-VIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKA 80 (494)
Q Consensus 3 ~~~~~hp~fW~~v~~l~~vlrG~~~~a~~lL~~h~~~-~~~-~~~~~~~~~~~~~~~lL~~~P~~~~~~~~~~~g~~~~~ 80 (494)
-+||+||+||++|+++ |+||+|+||+++|+ |+.+ ... .......++++.++.||++||++++
T Consensus 237 ~~P~eHp~FW~~v~~L--vLRGl~~qA~~~L~-~s~~~~~L~~~~~~~~~~i~dli~LL~~yP~~S~------------- 300 (570)
T 3f3f_C 237 KKVFETQYFWKLLNQL--VLRGLLSQAIGCIE-RSDLLPYLSDTCAVSFDAVSDSIELLKQYPKDSS------------- 300 (570)
T ss_dssp SSSSCSHHHHHHHHHH--HHTTCHHHHHHHHT-TTTTTHHHHHSCHHHHHHHHHHHHHHTTCCSSCH-------------
T ss_pred CCCCCCccHHHHHHHH--HHcccHHHHHHHHH-hcccchhhcccChHHHHHHHHHHHHHHhCCCCch-------------
Confidence 5799999999999999 99999999999999 5544 111 1113345678999999999998852
Q ss_pred hhHHHHHHHHHHHHHHh----hhcccchhhhccccchHhHHHHHHHHcCCchHHhhhhchHHHHHHHHhhhccCCccccc
Q 011083 81 KPDFMKAWEKWRAQIAK----LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLE 156 (494)
Q Consensus 81 ~~eF~~~w~~W~~~~~~----L~~~~~~~~~~~~~~~~~l~~l~~IL~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e 156 (494)
. +|++||..|.+ ++.+.|.+ ..+++++|+++++||+|++++|+++|+||||+++|+++|++|++++
T Consensus 301 -~----~fr~WK~~~~e~r~~l~~~~~~i---~~ei~~~Ledll~Il~Gd~~~Il~~~~tWYEal~allLy~~Pt~k~-- 370 (570)
T 3f3f_C 301 -S----TFREWKNLVLKLSQAFGSSATDI---SGELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFLLYYIPSLEL-- 370 (570)
T ss_dssp -H----HHHHHHHHHHHHHHHHHTSCCCS---CHHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHHHHHHHHTCCCGGG--
T ss_pred -H----HHHHHHHHHHHHHHHhccccccc---chHHHHHHHHHHHHHcCCHHHHHHHcccHHHHHhHheeeecCcccc--
Confidence 2 48899998854 44444321 1237899999999999999999999999999999999999999965
Q ss_pred hHHHHHHHHHHhCCCCcCChhHHHHHHHHcCCHHHHHHHHhhccCcchHHHHHHHHHcCCCcccch--------hhhhc-
Q 011083 157 SMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTL--------LHEER- 227 (494)
Q Consensus 157 ~l~~~~~~~~~~~p~~~~~~ld~~~~~i~~~d~~~vl~~~~~~~d~W~aaHl~dLL~~~g~~~~~~--------l~~~~- 227 (494)
.++|++.|++..|+|.++.+|.++++||+||+.+||+.++ .+|+|++||++|||+++|++.+.+ +++.+
T Consensus 371 -~~~y~q~al~~~p~d~~~~~E~~~~~i~egni~~VL~~lq-~ld~~~AA~vAdLle~~GlLe~~~~~~~~~~~l~~~~~ 448 (570)
T 3f3f_C 371 -SAEYLQMSLEANVVDITNDWEQPCVDIISGKIHSILPVME-SLDSCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDN 448 (570)
T ss_dssp -HHHHHHHHHHHSCCCTTSSSHHHHHHHHTTCCGGGHHHHH-HHCHHHHHHHHHHHHHHTSSCCCCCC------------
T ss_pred -cHHHHHHHHHhCCCCcccHHHHHHHHHHccCHHHHHHHHH-HhhHHHHHHHHHHHHHhCcccchhhhcccccccccccc
Confidence 5689999999999999999999999999999999999995 889999999999999999865321 01111
Q ss_pred ---cc-C-CCCchhHHHHHHHHHH--HccCCCchhhhhHHHHhchH----hhHHHHHHhhccCCCCcHHHHHHHHHHHHh
Q 011083 228 ---DN-L-GGISMEELHRLVYAQV--LSSHPLTWQIAPIYLTSCIK----QGMGLLEMLLYKQPVDHNQLLLKNLEICRL 296 (494)
Q Consensus 228 ---~~-~-~~~~lre~~ll~YA~~--L~s~~~LW~vai~YL~~c~~----~g~~~i~~lL~r~P~~s~~~~~k~l~iC~~ 296 (494)
+. + .+.+||||++++||.+ ++++++||||||+||++||. .||.+|+++|+|+|++|+++++|++++|++
T Consensus 449 ~~~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~ 528 (570)
T 3f3f_C 449 EMLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVE 528 (570)
T ss_dssp --CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHH
T ss_pred ccHhhhhcCcchHHHHHHHHHHhhcccccCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 11 2 4789999999999999 99999999999999999986 599999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHH
Q 011083 297 YELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNR 338 (494)
Q Consensus 297 ~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~ 338 (494)
+||+++|++||+++|++++++|++|+||+||+|||+.++|++
T Consensus 529 l~L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 529 WRLPEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYELVKS 570 (570)
T ss_dssp HTCHHHHHHHHHHHHC--------------------------
T ss_pred CCChHHHHHHHHHHHHHHHHCccHHHHHHHHHHcCChhhccC
Confidence 999999999999999999999999999999999999999974
No 2
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=97.67 E-value=0.0013 Score=68.78 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=151.0
Q ss_pred CCCchHhHHHHHHHhhcchHHHHHHHhhccCcchhhhhhhhhHHHHHHHHHHHhCCCCCcccccccccccccchhHH-HH
Q 011083 8 NQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDF-MK 86 (494)
Q Consensus 8 hp~fW~~v~~l~~vlrG~~~~a~~lL~~h~~~~~~~~~~~~~~~~~~~~~lL~~~P~~~~~~~~~~~g~~~~~~~eF-~~ 86 (494)
..++...+..+ ++.|++++|.++.-.+.++.+. .||.++-... ....+. ..
T Consensus 177 ~~~~~e~i~~~--L~~~~v~eA~~~Ai~~~d~rLA--------------~Llsq~g~~~------------~~r~~la~~ 228 (442)
T 3bg1_B 177 SSNEIEQIFLY--LLLNDVVRASKLAIESKNGHLS--------------VLISYLGSND------------PRIRDLAEL 228 (442)
T ss_dssp CSCHHHHHHHH--HTTTCHHHHHHHHHHTTCHHHH--------------HHHHHHTSCC------------HHHHHHHHH
T ss_pred CCCHHHHHHHH--HHCCCHHHHHHHHHHCCCcHHH--------------HHHHHhcCCc------------hHHHHHHHH
Confidence 46778888888 9999999999998755433322 2333221111 134555 66
Q ss_pred HHHHHHHHHHhhhcccchhhhccccchHhHHHHHHHHcCCc-------hHHhhhhchHHHHHHHHhhhccCCccccchHH
Q 011083 87 AWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNT-------NNLCTLTCHWMELYIAHFLYIRPFTVGLESMY 159 (494)
Q Consensus 87 ~w~~W~~~~~~L~~~~~~~~~~~~~~~~~l~~l~~IL~G~~-------~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~ 159 (494)
+-..||.. ..+ +.+.+..|+++|+|+. -.+++ .-+|+.+++.++-|-.|.... +.
T Consensus 229 QL~~W~~~------~~~--------I~~~~~kiY~LLAG~~~e~~~~~~~i~~-~LdW~ralgl~LWY~~~~~~s---i~ 290 (442)
T 3bg1_B 229 QLQKWSTG------GCS--------IDKNISKIYKLLSGSPFEGLFSLKELES-EFSWLCLLNLTLCYGQIDEYS---LE 290 (442)
T ss_dssp HHHHTTSS------CCC--------SCHHHHHHHHHHHSCSTTSTTCSGGGGG-TSCHHHHHHHHHHTCCCSSCC---HH
T ss_pred HHHHHHHh------Ccc--------CCHHHHHHHHHhcCCcccccccchhccc-CCCHHHHHHHHhhcCCCCCCC---HH
Confidence 77888843 122 4588999999999995 22333 678999999999999875544 33
Q ss_pred HHHHHHHHhCCCCcCChhHHH---HHHHHc--CCHHHHHHHHhhc---cCcchHHHHHHHHHcCCCcccchhhhhcccCC
Q 011083 160 GLAQKCIQLKPMAASHRLMGL---LIGILG--ENIEVVLAECSKG---FGPWMVTHAIEVLTAGSHQADTLLHEERDNLG 231 (494)
Q Consensus 160 ~~~~~~~~~~p~~~~~~ld~~---~~~i~~--~d~~~vl~~~~~~---~d~W~aaHl~dLL~~~g~~~~~~l~~~~~~~~ 231 (494)
+.++.-.+... .|.+.+ ++.++. .++..+|.-.+.. +|.-++=|+..+|.+.|.. +.
T Consensus 291 ~av~~f~~~~~----~P~~D~~~~LLkLya~~~~le~~L~p~s~s~~~lD~rLsW~L~~~L~a~g~~----------~~- 355 (442)
T 3bg1_B 291 SLVQSHLDKFS----LPYDDPIGVIFQLYAANENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTR----------VF- 355 (442)
T ss_dssp HHHHHHHHHSC----CCTTCHHHHHHHHHHSCTTHHHHHHHHHTTCCCSCHHHHHHHHHHHHTTSCS----------CC-
T ss_pred HHHHHHHHhcc----CCCCCHHHHHHHHHccCCCHHHHhChhccCCCcccchhHHHHHHHHHhCCCc----------cc-
Confidence 33333222221 111222 233332 6777787755333 3556888888888887731 01
Q ss_pred CCchhHHHHHHHHHHHccCCCchhhhhHHHHhchH--hhHHHHHHhhcc-CCCCcHHHHHHHHHHHHhcCCchHHHHHHH
Q 011083 232 GISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIK--QGMGLLEMLLYK-QPVDHNQLLLKNLEICRLYELDSVSSNIMK 308 (494)
Q Consensus 232 ~~~lre~~ll~YA~~L~s~~~LW~vai~YL~~c~~--~g~~~i~~lL~r-~P~~s~~~~~k~l~iC~~~~L~~~a~~I~k 308 (494)
.....+.+...||.+|-+. ++|+-|+=.|.+-++ .=..+|.++|.| ++.-++ .+---+..+++.|... |..
T Consensus 356 ~~~~~d~L~~~fA~QLe~~-Glw~wAifVllHl~d~~~Re~avr~lL~R~~~~~~~---~~~~fL~~~L~IP~~W--I~e 429 (442)
T 3bg1_B 356 SKETSDEATFAFAAQLEFA-QLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---STNDHILNRLKIPSQL--IFN 429 (442)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHSTGGGST---TTTSCHHHHTTCCHHH--HHH
T ss_pred ChhHHHHHHHHHHHHHHHC-CCcHHHHHHHhhCCChHHHHHHHHHHHHhhcccccc---HHHHHHHHHhCCCHHH--HHH
Confidence 2345889999999999975 899999999987532 224557787776 554332 1122345567777632 444
Q ss_pred HHHHHHHhcCc
Q 011083 309 IAGMYNWKHGK 319 (494)
Q Consensus 309 ~~g~~~~~~g~ 319 (494)
..+.++..+|+
T Consensus 430 AkAl~a~~~gd 440 (442)
T 3bg1_B 430 AQALKDRYEGN 440 (442)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhcCC
Confidence 44444444443
No 3
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.004 Score=69.08 Aligned_cols=246 Identities=13% Similarity=0.091 Sum_probs=149.0
Q ss_pred HhHHHHHHHhhcchHHHHHHHhhccCcchhhhhhhhhHHHHHHHHHHHhCCCCCcccccccccccccchhHHHHHHHHHH
Q 011083 13 SLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWR 92 (494)
Q Consensus 13 ~~v~~l~~vlrG~~~~a~~lL~~h~~~~~~~~~~~~~~~~~~~~~lL~~~P~~~~~~~~~~~g~~~~~~~eF~~~w~~W~ 92 (494)
+.+..+ ++.|++++|.++.-.+.++.+. .||..+-...+ ........+...|+
T Consensus 491 ~~i~~~--L~~~~i~~A~~~a~~~~~~~la--------------~ll~~~~~~~~-----------~~~~~~~~Ql~~W~ 543 (753)
T 3jro_A 491 EQIFLY--LLLNDVVRASKLAIESKNGHLS--------------VLISYLGSNDP-----------RIRDLAELQLQKWS 543 (753)
T ss_dssp HHHHHH--TTTTCHHHHHHHHHHTTCCHHH--------------HHGGGCSSCCH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHH--HHcCCHHHHHHHHHHcCChHHH--------------HHHHHhcCCCH-----------HHHHHHHHHHHHHH
Confidence 456776 8899999999886644544433 23333211100 02233344678886
Q ss_pred HHHHhhhcccchhhhccccchHhHHHHHHHHcCC-------chHHhhhhchHHHHHHHHhhhccCCccccchHHHHHHHH
Q 011083 93 AQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGN-------TNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKC 165 (494)
Q Consensus 93 ~~~~~L~~~~~~~~~~~~~~~~~l~~l~~IL~G~-------~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~~~~~ 165 (494)
.. +.+ +.+.++.|+++|+|+ ...|+ ..-+|.++++.++.|-.|.... +.+.++..
T Consensus 544 ~~------~~~--------i~~~~~~iy~llag~~~~~~~~~~~~~-~~l~W~~~l~~~lwy~~~~~~~---~~~~~~~~ 605 (753)
T 3jro_A 544 TG------GCS--------IDKNISKIYKLLSGSPFEGLFSLKELE-SEFSWLCLLNLTLCYGQIDEYS---LESLVQSH 605 (753)
T ss_dssp TT------TCC--------CCHHHHHHHHTSSSCCSSSTTCCGGGG-TTSCHHHHHHHHHHTSCTTTSC---HHHHHHHH
T ss_pred Hc------CCC--------CCHHHHHHHHHhCCCccccccchhhcc-CCCCHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 31 223 458899999999995 33444 3678999999999998876544 44555554
Q ss_pred HHhCCCCcCChhHHHH-HHHHcCCHHHHHHHHhhcc---CcchHHHHHHHHHcCCCcccchhhhhcccCCCCchhHHHHH
Q 011083 166 IQLKPMAASHRLMGLL-IGILGENIEVVLAECSKGF---GPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRL 241 (494)
Q Consensus 166 ~~~~p~~~~~~ld~~~-~~i~~~d~~~vl~~~~~~~---d~W~aaHl~dLL~~~g~~~~~~l~~~~~~~~~~~lre~~ll 241 (494)
.+.+++...+.+-.++ +-.-..++..+|.-.+... |.=++=|+..+|.+.|+. ++ .....+.+..
T Consensus 606 ~~~~~~~~~d~~~~ll~l~~~~~~~~~~l~~~~~~~~~ld~~l~w~l~~~l~~~~~~----------~~-~~~~~~~l~~ 674 (753)
T 3jro_A 606 LDKFSLPYDDPIGVIFQLYAANENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTR----------VF-SKETSDEATF 674 (753)
T ss_dssp HTTCCCCTTCHHHHHHHHHHCSTTHHHHHHHHHTTCTTSCHHHHHHHHHHTTTTTCS----------CC-CHHHHHHHHH
T ss_pred HhccCCCccCHHHHHHHHhcCCCCHHHhhccccCCCCCCccccHHHHHHHHHhcCCC----------cc-ChhhHHHHHH
Confidence 4545432222222221 1112567888887765443 323555788888776630 11 2245788999
Q ss_pred HHHHHHccCCCchhhhhHHHHhch--HhhHHHHHHhhcc-CCCCcHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Q 011083 242 VYAQVLSSHPLTWQIAPIYLTSCI--KQGMGLLEMLLYK-QPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHG 318 (494)
Q Consensus 242 ~YA~~L~s~~~LW~vai~YL~~c~--~~g~~~i~~lL~r-~P~~s~~~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g 318 (494)
.||.+|-+. ++|+-|+=.|.+.+ ..-..+|.++|.| ++.-++++- --+..+++.|.. =|+...+.++..+|
T Consensus 675 ~~a~qL~~~-g~~~~a~fv~~h~~~~~~r~~~i~~~l~r~~~~~~~~~~---~~l~~~l~ip~~--wi~~a~a~~~~~~~ 748 (753)
T 3jro_A 675 AFAAQLEFA-QLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRASTN---DHILNRLKIPSQ--LIFNAQALKDRYEG 748 (753)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHTCSCHHHHHHHHHHHHHHSCTTSSTTTT---TTTTTTTTCCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchhHHHHhhhCCChHHHHHHHHHHHHhhhhhcCcchh---hhHHhccCCCHH--HHHHHHHHHHHhcC
Confidence 999999887 79999999999864 3446788888865 554332221 125567777763 35555555555555
Q ss_pred cc
Q 011083 319 KK 320 (494)
Q Consensus 319 ~~ 320 (494)
++
T Consensus 749 ~~ 750 (753)
T 3jro_A 749 NY 750 (753)
T ss_dssp HH
T ss_pred Cc
Confidence 44
No 4
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=95.61 E-value=0.12 Score=54.29 Aligned_cols=229 Identities=12% Similarity=0.137 Sum_probs=129.9
Q ss_pred CCchHhHHHHHHHhhcchHHHHHHHhhccCcchhhhhhhhhHHHHHHHHHHHhC-----CCCCcccccccccccccchhH
Q 011083 9 QEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKM-----PRMRPELEAGKLGECFKAKPD 83 (494)
Q Consensus 9 p~fW~~v~~l~~vlrG~~~~a~~lL~~h~~~~~~~~~~~~~~~~~~~~~lL~~~-----P~~~~~~~~~~~g~~~~~~~e 83 (494)
..||.++..+ |.+|++++|.++-+..+ +... + ..|.-+ |.+.+...++. +. ..+.
T Consensus 178 ~~l~~~i~~l--iR~G~~~eA~~lc~~~g--q~WR-----------A-asL~G~~~~~dP~~~~~~~~e~--~~-~~Gn- 237 (460)
T 3iko_C 178 HIFFKYIYEL--ILAGAIDEALEEAKLSD--NISI-----------C-MILCGIQEYLNPVIDTQIANEF--NT-QQGI- 237 (460)
T ss_dssp HHHHHHHHHH--HHTTCHHHHHHHHHHTT--CHHH-----------H-HHHHTTSBCBCTTTSGGGTTTC--SS-CBSB-
T ss_pred HHHHHHHHHH--HHCCCHHHHHHHHHHcC--CHHH-----------H-HHHcccccccCccccccccccc--cc-ccCc-
Confidence 3689999999 99999999999988443 2211 0 112233 33332110000 00 0111
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhccccchHhHHHHHHHHcCCchHHhh--hhchHHHHHHHHhh---------hc---c
Q 011083 84 FMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT--LTCHWMELYIAHFL---------YI---R 149 (494)
Q Consensus 84 F~~~w~~W~~~~~~L~~~~~~~~~~~~~~~~~l~~l~~IL~G~~~~i~~--~~~~WyE~~~a~~l---------y~---~ 149 (494)
..+.-||..|-++.... .+.+.=+-|+..|||+-..+.. .| +|-+.+-|++= |. .
T Consensus 238 --~~r~LWkr~c~~lA~~~--------~~~~yERAvY~~LsG~l~s~~~~~~~-sWeD~Lway~n~ll~~~vd~~l~~~~ 306 (460)
T 3iko_C 238 --KKHSLWRRTVYSLSQQA--------GLDPYERAIYSYLSGAIPNQEVLQYS-DWESDLHIHLNQILQTEIENYLLENN 306 (460)
T ss_dssp --TTHHHHHHHHHHHHHCS--------SSCHHHHHHHHHHHTSCCCHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --hhHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHhCCchhhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 14888999997764332 1346778999999999998865 56 99998877531 10 0
Q ss_pred CCc--c-------ccchHHHHHHHHHHhCCCCcCChhHHHHHHHHcCCHHHHHHHHhhccCc------------------
Q 011083 150 PFT--V-------GLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGP------------------ 202 (494)
Q Consensus 150 P~~--~-------~~e~l~~~~~~~~~~~p~~~~~~ld~~~~~i~~~d~~~vl~~~~~~~d~------------------ 202 (494)
|.. + ....+..+++...+..+....+++-.+..+||-+++...+..+...+..
T Consensus 307 ~~~~~~~~~~~P~~~~tl~~il~~L~~~~~~ea~~p~r~iQ~~iIl~~~~~ll~~~~~~L~~~~~~~~~~~~~~~~~~~L 386 (460)
T 3iko_C 307 QVGTDELILPLPSHALTVQEVLNRVASRHPSESEHPIRVLMASVILDSLPSVIHSSVEMLLDVVKGTEASNDIIDKPYLL 386 (460)
T ss_dssp CSCGGGCCSCCCCCCCCHHHHHHHHHHHSHHHHHSTTHHHHHHHHSSCCHHHHHHHHHTCCC----------CTTSHHHH
T ss_pred CccccccccCCCCCccCHHHHHHHHHhcChHhhhChHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCccccccccCcchH
Confidence 110 0 0012445554444333323345666788999999999999888654421
Q ss_pred chHHHHHHHHHcCCCcccchhhhhcccCCCCchhHHHHHHHHHHHccCCCchhhhhHHHHhchH-hhHHHHHHhhccCC
Q 011083 203 WMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIK-QGMGLLEMLLYKQP 280 (494)
Q Consensus 203 W~aaHl~dLL~~~g~~~~~~l~~~~~~~~~~~lre~~ll~YA~~L~s~~~LW~vai~YL~~c~~-~g~~~i~~lL~r~P 280 (494)
=|.||+.=++...|. . .. .....+-.|..|...|.... ...+-.=|.+.-+. ......+.+|..+.
T Consensus 387 Rf~aHl~Lflr~l~~--------~--~~-~~~~~~~II~~YI~~L~~~~-~~eLIplY~S~L~~~~~~e~Ys~fL~~i~ 453 (460)
T 3iko_C 387 RIVTHLAICLDIINP--------G--SV-EEVDKSKLITTYISLLKLQG-LYENIPIYATFLNESDCLEACSFILSSLE 453 (460)
T ss_dssp HHHHHHHHHHHHHST--------T--SS-CHHHHHHHHHHHHHHHHHTT-CGGGHHHHHTTCGGGGGC-----------
T ss_pred HHHHHHHHHHHHhCc--------c--cc-ChHHHHHHHHHHHHHHHHCC-CcccHHHHHccCCHhHHHHHHHHHHhcCC
Confidence 256666655555442 0 01 12346788889999998864 44677777776544 46778888888775
No 5
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=93.79 E-value=4.3 Score=44.31 Aligned_cols=358 Identities=9% Similarity=0.014 Sum_probs=179.7
Q ss_pred CCCCchHhHHHHHHHhhcchHHHHHHHhhccCcchhhhhhhhhHHHHHHHHHHHhCCCCCcccccccccccccchhHHHH
Q 011083 7 NNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMK 86 (494)
Q Consensus 7 ~hp~fW~~v~~l~~vlrG~~~~a~~lL~~h~~~~~~~~~~~~~~~~~~~~~lL~~~P~~~~~~~~~~~g~~~~~~~eF~~ 86 (494)
+.+.-|+.|+-| +=.|..++|.++++.++..... .-..+...++.+=.. +. +. -.++...
T Consensus 151 ~g~p~Wa~IyY~--LR~G~~~~A~e~~~~~~~~~~~--------~d~~F~~~l~~~~~s-~~---~~------L~~~~~~ 210 (661)
T 2qx5_A 151 NGVPIWALIFYL--LRAGLIKEALQVLVENKANIKK--------VEQSFLTYFKAYASS-KD---HG------LPVEYST 210 (661)
T ss_dssp TTEEHHHHHHHH--HTTTCHHHHHHHHHHTGGGC-------------CHHHHHHHC------------------------
T ss_pred CCcccHHHHHHH--HhcCCHHHHHHHHHHhhhhHhh--------hhHHHHHHHHHHHhC-CC---CC------CCHHHHH
Confidence 345689999998 9999999999999865532210 001112222222100 00 00 1111111
Q ss_pred H-HHHHHHHHHhhhcccchhhhccccchHhHHHHHHHHcCCch------HHhhhhchHH--HHHHHHhhhccCCc-----
Q 011083 87 A-WEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTN------NLCTLTCHWM--ELYIAHFLYIRPFT----- 152 (494)
Q Consensus 87 ~-w~~W~~~~~~L~~~~~~~~~~~~~~~~~l~~l~~IL~G~~~------~i~~~~~~Wy--E~~~a~~ly~~P~~----- 152 (494)
+ ..+|+..++. . ...++.=.-+++||.|-+- .|....+||. .+.. .+.+.
T Consensus 211 ~l~~ey~~~~r~---~--------~~~DpyK~AvY~Iig~cD~~~~~~~~v~~siED~LWl~L~l-----vre~~~~~~~ 274 (661)
T 2qx5_A 211 KLHTEYNQHIKS---S--------LDGDPYRLAVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLML-----IKEKDAENDP 274 (661)
T ss_dssp ---------------------------CHHHHHHHHHHHTCCGGGCCCGGGCCSHHHHHHHHHHT-----CCC-------
T ss_pred HHHHHHHHHHhC---C--------CCCCHHHHHHHHHHhcccccccchHHHhccHHHHHHHHHHh-----ccCCCccccc
Confidence 1 1223333221 0 0133556677888877643 2334456654 3322 22211
Q ss_pred --cccchHHHHHHHHHHhCCCCcCChhHHHHHHHHcCCHHHHHHHHhhccCcchHHHHHHHHHcCCCcccchhhhhcccC
Q 011083 153 --VGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNL 230 (494)
Q Consensus 153 --~~~e~l~~~~~~~~~~~p~~~~~~ld~~~~~i~~~d~~~vl~~~~~~~d~W~aaHl~dLL~~~g~~~~~~l~~~~~~~ 230 (494)
..+ .+.++- ..+..+++..-+++ =...=++.|-.+.+|.-+. ....-=|+|+|=.|+..|++.. +.+....
T Consensus 275 ~~e~y-tL~~LQ-~~I~~yGe~~F~~l-Yf~vLlLtgqFE~AI~~L~-~~~~vdAVH~AIaL~~~gLL~~---~~~lls~ 347 (661)
T 2qx5_A 275 VYERY-SLEDFQ-NIIISYGPSRFSNY-YLQTLLLSGLYGLAIDYTY-TFSEMDAVHLAIGLASLKLFKI---DSSTRLT 347 (661)
T ss_dssp ---CC-CHHHHH-HHHHHHCGGGGTTC-HHHHHHHTTCHHHHHHHHH-TTCHHHHHHHHHHHHHTTC-------------
T ss_pred ccccc-cHHHHH-HHHHHhhhhhhhhH-HHHHHHHHhhHHHHHHHHH-hcCchhHHHHHHHHHHcCCccC---CCccccc
Confidence 111 244433 33335554433321 2234467899999999985 4467889999988888886331 1110000
Q ss_pred C--CCch-hHHHHHHHHHHHccCCCchhhhhHHHHh-chH---hhHHHHHHhhccCCCCcHHHHHHHH-----------H
Q 011083 231 G--GISM-EELHRLVYAQVLSSHPLTWQIAPIYLTS-CIK---QGMGLLEMLLYKQPVDHNQLLLKNL-----------E 292 (494)
Q Consensus 231 ~--~~~l-re~~ll~YA~~L~s~~~LW~vai~YL~~-c~~---~g~~~i~~lL~r~P~~s~~~~~k~l-----------~ 292 (494)
. ...+ =--+|..|.... ..+==+.|++|+.. |-. .|.....+.+..+=++| ++..+++ -
T Consensus 348 ~~~~~~lN~arLI~~Yt~~F--~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvlet-r~f~~LLG~i~~dG~r~~G 424 (661)
T 2qx5_A 348 KKPKRDIRFANILANYTKSF--RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLET-KEFTVLLGKIGRDGARIPG 424 (661)
T ss_dssp -------CHHHHHHHHHTTT--TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHH-CCHHHHHCEECTTSCEECC
T ss_pred CCCcccccHHHHHHHHHHHh--hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhc-ccHHHHcCCcCCCCCcCcc
Confidence 0 0010 112344444333 33456889999973 533 34333333333222222 1122222 1
Q ss_pred HHHh----cCCc---hHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHHHHHHHHHHHhccCC--cchh-------
Q 011083 293 ICRL----YELD---SVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSIS--DENF------- 356 (494)
Q Consensus 293 iC~~----~~L~---~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~iad~ll~~y~~~~s--~~~~------- 356 (494)
+-.+ .+|. +..++|....|.++-.+|++..|+.-+-.|||++.|=++.+..|.+.+.+.+ .+++
T Consensus 425 ~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~ 504 (661)
T 2qx5_A 425 VIEERQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSE 504 (661)
T ss_dssp HHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTT
T ss_pred hHHHhhcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 1222 2232 4688999999999999999999999999999999999999999888765421 1111
Q ss_pred hch----HHHHHhhCCCCC----CC----CcchhhHhHHHHHHHHhhhccCCchHHHHHHHHHHHHhhcCCCCCcc
Q 011083 357 RQW----EGLIQLLGSEPK----TA----GGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQR 420 (494)
Q Consensus 357 ~~~----~~ll~~l~~~~~----~~----~~L~fL~~Y~~f~~~~~~~~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~ 420 (494)
+++ ..+++....... ++ ....-|-+-.+|+.+|. +|++.. |.+.+-. -++.|-.
T Consensus 505 ~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~---~g~~~~----AL~~i~~---L~llPl~ 570 (661)
T 2qx5_A 505 TNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYF---NKQWQE----TLSQMEL---LDLLPFS 570 (661)
T ss_dssp TCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---TTCHHH----HHHHHHH---TSCSCC-
T ss_pred ccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHH---cCCHHH----HHHHHHh---CCCCCCC
Confidence 122 233333333211 11 12344777888888884 477764 5554444 3677754
No 6
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=92.53 E-value=0.69 Score=47.48 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=89.9
Q ss_pred HhHHHHHHHHcCCchHHhhh--hchHHHHHHHHhhhccCCccccchH-HHHHHHHHHhCCCCcCChhHHHHHHHHcCCHH
Q 011083 114 EGLRNMLQIMLGNTNNLCTL--TCHWMELYIAHFLYIRPFTVGLESM-YGLAQKCIQLKPMAASHRLMGLLIGILGENIE 190 (494)
Q Consensus 114 ~~l~~l~~IL~G~~~~i~~~--~~~WyE~~~a~~ly~~P~~~~~e~l-~~~~~~~~~~~p~~~~~~ld~~~~~i~~~d~~ 190 (494)
+.++.+..|+.||-+.+... -.+|.|.+++.+-|..|....+..+ ..+.++-.+.. +..+..++-|+.|++.
T Consensus 204 ~~~rll~~iv~~n~~d~V~~~~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g-----~~~~A~lCYi~Ag~~d 278 (399)
T 2pm7_A 204 SLSRILYSISKREVDDLVENLDVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENG-----HRQDSLTLYLAAGSLD 278 (399)
T ss_dssp HHHHHHHHHHTTCCHHHHHHBCGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHccCHHHHHhcCChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCC-----ChhhhhHHHHhhCCHH
Confidence 77899999999999998765 4789999999999997652111112 23333333221 3456788999999999
Q ss_pred HHHHHHhhccC-----------cchHHH---HHHHHHcCCCcccchhhhhcc---cCCCCchhHHHHHHHHHHHccCCCc
Q 011083 191 VVLAECSKGFG-----------PWMVTH---AIEVLTAGSHQADTLLHEERD---NLGGISMEELHRLVYAQVLSSHPLT 253 (494)
Q Consensus 191 ~vl~~~~~~~d-----------~W~aaH---l~dLL~~~g~~~~~~l~~~~~---~~~~~~lre~~ll~YA~~L~s~~~L 253 (494)
+++..-...+. +=+.+| +.+++++.= ++..-.. ......+.+ ++++||..|+++ +.
T Consensus 279 k~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~-----vl~~a~~~~~~~~~~~l~~-~~~eYA~lLA~q-G~ 351 (399)
T 2pm7_A 279 KVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFT-----VFSNFINGSSTINNEQLIA-KFLEFINLTTST-GN 351 (399)
T ss_dssp HHHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----HHHTTSCC---CCCHHHHH-HHHHHHHHHHTT-TC
T ss_pred HHHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHH-----HHHHHHhcCCCcCcHHHHH-HHHHHHHHHHhC-CC
Confidence 98876533221 223344 456666541 1221111 112233444 488999999887 78
Q ss_pred hhhhhHHHHhch
Q 011083 254 WQIAPIYLTSCI 265 (494)
Q Consensus 254 W~vai~YL~~c~ 265 (494)
-..|..||..-|
T Consensus 352 l~~A~~yL~~lp 363 (399)
T 2pm7_A 352 FELATEFLNSLP 363 (399)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhCC
Confidence 899999997643
No 7
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.02 E-value=33 Score=33.65 Aligned_cols=84 Identities=5% Similarity=-0.031 Sum_probs=61.7
Q ss_pred hHhhHHHHHHhhccCCCCcH---HHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHHHH
Q 011083 265 IKQGMGLLEMLLYKQPVDHN---QLLLKNLEICRLYELDSV-SSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIA 340 (494)
Q Consensus 265 ~~~g~~~i~~lL~r~P~~s~---~~~~k~l~iC~~~~L~~~-a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~ia 340 (494)
.+..+.+|-+++..+|-++. +-+.+++.+..+.|=... --.+.+++|...+++|++.+|-.+++.+. .+.....+
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a 169 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYV 169 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHH
Confidence 45678899999999986543 345668888887643222 23689999999999999999999999554 44456777
Q ss_pred HHHHHHHhc
Q 011083 341 QQMFDSVGR 349 (494)
Q Consensus 341 d~ll~~y~~ 349 (494)
+++.+-+..
T Consensus 170 ~~l~~w~~~ 178 (312)
T 2wpv_A 170 DLLWDWLCQ 178 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777765544
No 8
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=65.73 E-value=56 Score=33.14 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=38.1
Q ss_pred ch--HHHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHHHHHH
Q 011083 300 DS--VSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQ 342 (494)
Q Consensus 300 ~~--~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~iad~ 342 (494)
++ .-..+|..+|.|+..+|+.-.|..+|+=||+.+.+-.+=-.
T Consensus 242 ~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~ 286 (399)
T 2pm7_A 242 NDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLS 286 (399)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHH
Confidence 56 78899999999999999999999999999999887766433
No 9
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=51.87 E-value=16 Score=29.17 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=33.0
Q ss_pred HHHHHhcCcchHHHHHHHHcC---CHHHHHHHHHHHHHHHhc
Q 011083 311 GMYNWKHGKKGSGVYWLQQAR---DEARLNRIAQQMFDSVGR 349 (494)
Q Consensus 311 g~~~~~~g~~g~Al~w~~ra~---D~~~v~~iad~ll~~y~~ 349 (494)
|.++.+.++||+|+..+-++. +-..++.|++..+++|-.
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 667788999999999998876 678899999999887743
No 10
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.82 E-value=1.2e+02 Score=29.95 Aligned_cols=85 Identities=8% Similarity=0.035 Sum_probs=61.4
Q ss_pred hHhhHHHHHHhhccCCCCcHH---HHHHHHHHHHhcCCchH-HHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHHHH
Q 011083 265 IKQGMGLLEMLLYKQPVDHNQ---LLLKNLEICRLYELDSV-SSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIA 340 (494)
Q Consensus 265 ~~~g~~~i~~lL~r~P~~s~~---~~~k~l~iC~~~~L~~~-a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~ia 340 (494)
.+..+.+|-+++..+|-.+.. =+.+++.+..+.|=... --.+..++|...+++|+|.+|-.+++.+.| +....++
T Consensus 93 ~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~-~s~~~~a 171 (336)
T 3lpz_A 93 DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTK-ESPEVLA 171 (336)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCT-THHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCC-chHHHHH
Confidence 456788999999999965432 23457777777652221 235888999999999999999999997655 4447778
Q ss_pred HHHHHHHhcc
Q 011083 341 QQMFDSVGRS 350 (494)
Q Consensus 341 d~ll~~y~~~ 350 (494)
+++.+=+...
T Consensus 172 ~mL~ew~~~~ 181 (336)
T 3lpz_A 172 RMEYEWYKQD 181 (336)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhc
Confidence 8887555443
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=49.69 E-value=48 Score=35.57 Aligned_cols=38 Identities=11% Similarity=-0.050 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHHHHH
Q 011083 304 SNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQ 341 (494)
Q Consensus 304 ~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~iad 341 (494)
+...+.+|+.+++.|++-.|...|.+++|+..+..+..
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~ 718 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHS 718 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHH
Confidence 45678999999999999999999999999999887754
No 12
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=49.02 E-value=18 Score=32.56 Aligned_cols=48 Identities=10% Similarity=-0.016 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHHH
Q 011083 288 LKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRI 339 (494)
Q Consensus 288 ~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~i 339 (494)
+..+++|++.+ .....+.+|..++.+|++..|-.+|.+++|+..+.-+
T Consensus 22 ~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~L 69 (177)
T 3mkq_B 22 DAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFL 69 (177)
T ss_dssp HHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHH
Confidence 44556666542 2457789999999999999999999999999998544
No 13
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=32.70 E-value=1.2e+02 Score=31.28 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=32.0
Q ss_pred hHhHHHHHHHHcCCchHHhhh-----------hchHHHHHHHHhhhccCCc
Q 011083 113 QEGLRNMLQIMLGNTNNLCTL-----------TCHWMELYIAHFLYIRPFT 152 (494)
Q Consensus 113 ~~~l~~l~~IL~G~~~~i~~~-----------~~~WyE~~~a~~ly~~P~~ 152 (494)
..-++.+++++.|+...+... -.+|.|.+.+.+-+..+..
T Consensus 217 ~~~Lr~Ly~v~sGn~~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~ 267 (441)
T 3mzk_B 217 AHFLLLIFQVFVGNSKMAIKSFYTNNETSQWASENWKSIVAAVLINIPENN 267 (441)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCS
T ss_pred ccHHHHHHHHHcCCHHHHHHHhccCCccccchHhHHHHHHHHHHhCCCCch
Confidence 356899999999999887542 3489999999999876644
No 14
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=29.86 E-value=33 Score=26.93 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHcC
Q 011083 305 NIMKIAGMYNWKHGKKGSGVYWLQQAR 331 (494)
Q Consensus 305 ~I~k~~g~~~~~~g~~g~Al~w~~ra~ 331 (494)
.-|-.+|..+...|+|..|+.|+-.|-
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al 32 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQAL 32 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 467889999999999999999998773
No 15
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=29.18 E-value=89 Score=26.32 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCcchHHHHHHHHcCC
Q 011083 284 NQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARD 332 (494)
Q Consensus 284 ~~~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D 332 (494)
.+...+.++++.+.+.+.....++..+|.-....|++.+|+.++.++-+
T Consensus 46 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 46 RASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455678888999888888888889999999999999999988887643
No 16
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=29.11 E-value=1.2e+02 Score=30.03 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHhcCcchHHHH-------HHHHcCCHHHHHHHHHHHHHHHhccC
Q 011083 301 SVSSNIMKIAGMYNWKHGKKGSGVY-------WLQQARDEARLNRIAQQMFDSVGRSI 351 (494)
Q Consensus 301 ~~a~~I~k~~g~~~~~~g~~g~Al~-------w~~ra~D~~~v~~iad~ll~~y~~~~ 351 (494)
-+|...+|+...|.++.++|.+|+. -+.+.+.......++-.+++.|.+.+
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999987 56788999999999999999997764
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=25.96 E-value=1.2e+02 Score=23.72 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCcchHHHHHHHHc
Q 011083 286 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA 330 (494)
Q Consensus 286 ~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra 330 (494)
-.++.++++.+.+-+.....++..+|.-....|++.+|+.++.++
T Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455566655555555556666777777777777777766554
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=25.63 E-value=2.2e+02 Score=34.05 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=59.5
Q ss_pred CCCchhhhhHHHHhchHhhHHHHHHhhccCCCCcHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 011083 250 HPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQ 329 (494)
Q Consensus 250 ~~~LW~vai~YL~~c~~~g~~~i~~lL~r~P~~s~~~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~r 329 (494)
+.++.+=|+.++.-|..... +++.++. .-...+++.+++.+... ..+...+|+...+.|++-+|+..|.|
T Consensus 1061 ~lglyEEAf~IYkKa~~~~~-A~~VLie-----~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVNTS-AVQVLIE-----HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred hCCCHHHHHHHHHHcCCHHH-HHHHHHH-----HHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45677777777776653333 3344443 23356667777777655 45666888999999999999999999
Q ss_pred cCCHHHHHHHHHH
Q 011083 330 ARDEARLNRIAQQ 342 (494)
Q Consensus 330 a~D~~~v~~iad~ 342 (494)
|+|+....+++..
T Consensus 1131 AdD~say~eVa~~ 1143 (1630)
T 1xi4_A 1131 ADDPSSYMEVVQA 1143 (1630)
T ss_pred cCChHHHHHHHHH
Confidence 9999998877743
No 19
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=25.54 E-value=1.2e+02 Score=23.71 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCcchHHHHHHHHcC
Q 011083 286 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQAR 331 (494)
Q Consensus 286 ~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~ 331 (494)
...+.++++.+.+-+.....++..+|.-....|++.+|+.++.++-
T Consensus 111 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 111 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4466777787777766777788889999999999999999887763
Done!