Query 011083
Match_columns 494
No_of_seqs 124 out of 166
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 20:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011083.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011083hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjca_ a.118.8.1 (A:) Prolyl 35.7 11 0.00081 27.5 2.9 26 305-330 6-31 (95)
2 d1b89a_ a.118.1.3 (A:) Clathri 28.9 45 0.0032 30.6 6.7 63 283-345 13-81 (336)
3 d1t3qa1 a.56.1.1 (A:88-168) Qu 26.0 19 0.0013 26.3 2.6 57 263-319 22-80 (81)
4 d1h2vc2 a.118.1.14 (C:291-480) 23.3 23 0.0017 30.0 3.1 99 112-211 24-134 (190)
5 d1xsza1 a.118.3.1 (A:1-197) Ra 20.3 58 0.0042 27.4 5.2 73 244-316 43-120 (197)
6 d1b25a1 a.110.1.1 (A:211-619) 20.1 46 0.0034 31.4 5.0 63 277-343 105-167 (409)
7 d2itba1 a.25.1.7 (A:3-201) Put 18.6 82 0.006 26.6 5.7 88 263-356 34-127 (199)
8 d1rm6c1 a.56.1.1 (C:82-157) 4- 17.7 44 0.0032 23.8 3.1 51 263-313 21-73 (76)
9 d1nzna_ a.118.8.1 (A:) Mitocho 16.5 1E+02 0.0076 23.0 5.6 28 303-330 71-98 (122)
10 d1h3oa_ a.22.1.3 (A:) TAF(II)- 16.1 19 0.0014 23.7 0.6 23 288-310 10-32 (50)
No 1
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.65 E-value=11 Score=27.49 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHc
Q 011083 305 NIMKIAGMYNWKHGKKGSGVYWLQQA 330 (494)
Q Consensus 305 ~I~k~~g~~~~~~g~~g~Al~w~~ra 330 (494)
.-|-.+|....+.|+|..|+.|+-+|
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~A 31 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQA 31 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34678899999999999999999776
No 2
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.88 E-value=45 Score=30.57 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHH------HHHHHHhcCcchHHHHHHHHcCCHHHHHHHHHHHHH
Q 011083 283 HNQLLLKNLEICRLYELDSVSSNIMKI------AGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFD 345 (494)
Q Consensus 283 s~~~~~k~l~iC~~~~L~~~a~~I~k~------~g~~~~~~g~~g~Al~w~~ra~D~~~v~~iad~ll~ 345 (494)
...++..+...|.+.||-+.|..+|.. +....++.+.+-.|+..+.|+++...++.+...+++
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455778899999999999999999985 444567788999999999999999999888877664
No 3
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=26.03 E-value=19 Score=26.30 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=46.7
Q ss_pred hchHhhHHHHHHhhccCCCCcHHHHHHHHH--HHHhcCCchHHHHHHHHHHHHHHhcCc
Q 011083 263 SCIKQGMGLLEMLLYKQPVDHNQLLLKNLE--ICRLYELDSVSSNIMKIAGMYNWKHGK 319 (494)
Q Consensus 263 ~c~~~g~~~i~~lL~r~P~~s~~~~~k~l~--iC~~~~L~~~a~~I~k~~g~~~~~~g~ 319 (494)
||...-...+..||.+-|-.|++++...++ +|+=-|-..+.+.|.+....+..++|.
T Consensus 22 fCtPG~vm~~~~ll~~~~~ps~~ei~~al~GnlCRCtgY~~I~~Av~~~a~~~~~~~ge 80 (81)
T d1t3qa1 22 FCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVAEAARRGE 80 (81)
T ss_dssp SSHHHHHHHHHHHHHHCSSCCHHHHHHHGGGSCCSSSCSHHHHHHHTCHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHhcCCCCCHHHHHHHHcCCcCcCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 566556778888999999999999999885 999999999988888877776666654
No 4
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.30 E-value=23 Score=29.99 Aligned_cols=99 Identities=12% Similarity=0.201 Sum_probs=49.9
Q ss_pred chHhHHHHHHHHcCCchHHhh------hhchH-HHHHHHHhhhcc----CCccccch-HHHHHHHHHHhCCCCcCChhHH
Q 011083 112 TQEGLRNMLQIMLGNTNNLCT------LTCHW-MELYIAHFLYIR----PFTVGLES-MYGLAQKCIQLKPMAASHRLMG 179 (494)
Q Consensus 112 ~~~~l~~l~~IL~G~~~~i~~------~~~~W-yE~~~a~~ly~~----P~~~~~e~-l~~~~~~~~~~~p~~~~~~ld~ 179 (494)
.+++|.+++..+.||.+.-.+ .-.+| .|.++.=.++.. |+...... .+.++.++-+..|......+-+
T Consensus 24 iee~i~dii~~~~~nRkecA~~Ll~~p~~~~~~~e~~ivE~ifs~m~~LP~~~~~~iyY~sll~elCK~~P~~ip~v~~~ 103 (190)
T d1h2vc2 24 IEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQ 103 (190)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHhCCCcccCchHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 568999999999999887432 24556 566555444432 44433221 3345555555554332222223
Q ss_pred HHHHHHcCCHHHHHHHHhhccCcchHHHHHHH
Q 011083 180 LLIGILGENIEVVLAECSKGFGPWMVTHAIEV 211 (494)
Q Consensus 180 ~~~~i~~~d~~~vl~~~~~~~d~W~aaHl~dL 211 (494)
.+..+++. +...=-+|...+-.||+-|+++.
T Consensus 104 ai~~ly~~-l~~md~e~~~Rf~dWfShHLSNF 134 (190)
T d1h2vc2 104 ATEMLYMR-LDTMNTTCVDRFINWFSHHLSNF 134 (190)
T ss_dssp HHHHHHHT-GGGBCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHh-cccCCHHHHHHHHHHHHHHhhcc
Confidence 33222221 22222222233446777777754
No 5
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=20.33 E-value=58 Score=27.42 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=49.5
Q ss_pred HHHHc-cCCCchhhhh-HHHHhchHhhHHHHHHhhccCCCCcHHHHHHHHHHHHhcCCchHHHHHHHHH---HHHHHh
Q 011083 244 AQVLS-SHPLTWQIAP-IYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIA---GMYNWK 316 (494)
Q Consensus 244 A~~L~-s~~~LW~vai-~YL~~c~~~g~~~i~~lL~r~P~~s~~~~~k~l~iC~~~~L~~~a~~I~k~~---g~~~~~ 316 (494)
|..|. ..++|=+.+| +||+...+.....+.+++....+....-.+-+-.+|....|+.+++.|=|++ +.+..+
T Consensus 43 a~fl~~~~~~L~k~~iGeyLg~~~~~n~~vl~~y~~~f~f~~~~id~ALR~~l~~f~LpgE~Q~IdRile~Fa~~y~~ 120 (197)
T d1xsza1 43 AEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQ 120 (197)
T ss_dssp HHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHcCCchHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 33343 4566777777 4555545667899999999988865433344556889999999888866554 444444
No 6
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.15 E-value=46 Score=31.37 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=46.2
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHHHHHHH
Q 011083 277 YKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQM 343 (494)
Q Consensus 277 ~r~P~~s~~~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~iad~l 343 (494)
+.+=+.+-+.+.++..+|.++||+.+..-..--+.+.+..+|-+.+...| ||...+.++..+|
T Consensus 105 s~~gi~D~~~v~~~n~lcd~~GlDtIs~G~~ia~amE~~e~Gll~~~~~~----Gd~e~~~~ll~~I 167 (409)
T d1b25a1 105 SNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTF----GDFKGAKQLALDI 167 (409)
T ss_dssp GGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCT----TCHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHCCCCCccccC----CChHHHHHHHHHH
Confidence 33455677889999999999999998877777788888888866554443 5666665555444
No 7
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=18.58 E-value=82 Score=26.56 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=60.8
Q ss_pred hchHhhHHHHHHhhccCCCCcHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-----cCcchHHHHHHHHcCCHHHHH
Q 011083 263 SCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWK-----HGKKGSGVYWLQQARDEARLN 337 (494)
Q Consensus 263 ~c~~~g~~~i~~lL~r~P~~s~~~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~-----~g~~g~Al~w~~ra~D~~~v~ 337 (494)
+|.....++.=.++.|+|- ..+-+.++..++++= | ..-+.|.+++..|-+. ..+|+.+|...+|.+....
T Consensus 34 ~cEkKAA~~Alsli~rYp~-~~~Lv~~m~~La~EE-L-~HF~qV~~im~~Rgi~l~~~~~~~Ya~~L~~~~r~~~~~~-- 108 (199)
T d2itba1 34 NCEFKAASTALSLIAKYNT-HLDLINMMSRLAREE-L-VHHEQVLRLMKRRGVPLRPVSAGRYASGLRRLVRAHEPVK-- 108 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH-H-HHHHHHHHHHHHTTCCCCCCCCCSHHHHHHTTSCSSTTHH--
T ss_pred HHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHH-H-HHHHHHHHHHHHcCCCCCCCCccHHHHHHHHHccCCChHH--
Confidence 5877777777789999995 445777788888871 2 2456677887777664 4599999999999987764
Q ss_pred HHHHHHH-HHHhccCCcchh
Q 011083 338 RIAQQMF-DSVGRSISDENF 356 (494)
Q Consensus 338 ~iad~ll-~~y~~~~s~~~~ 356 (494)
..|.++ ..++...|-+-|
T Consensus 109 -llD~Llv~AlIEARScERF 127 (199)
T d2itba1 109 -LVDTLVVGAFIEARSCERF 127 (199)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhHHhHH
Confidence 566644 344443223444
No 8
>d1rm6c1 a.56.1.1 (C:82-157) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=17.68 E-value=44 Score=23.80 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=41.8
Q ss_pred hchHhhHHHHHHhhccCCCCcHHHHHHHHH--HHHhcCCchHHHHHHHHHHHH
Q 011083 263 SCIKQGMGLLEMLLYKQPVDHNQLLLKNLE--ICRLYELDSVSSNIMKIAGMY 313 (494)
Q Consensus 263 ~c~~~g~~~i~~lL~r~P~~s~~~~~k~l~--iC~~~~L~~~a~~I~k~~g~~ 313 (494)
||...-...+..||.+-|-.|++++...++ +|+=-|-..+.+.|.+.++.|
T Consensus 21 yCtPG~im~~~~ll~~~~~ps~~ei~~~l~GnlCRCtgY~~I~~Av~~aa~~r 73 (76)
T d1rm6c1 21 FCTPGMIMASEALLRKNPSPSRDEIKAALAGNLCRCTGYVKIIKSVETAAAAR 73 (76)
T ss_dssp SSHHHHHHHHHHHHHHCSSCCHHHHHHHTTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCCcchHHHHHHHhCCcCcCCCcHHHHHHHHHHHHHh
Confidence 566566677888999999999999998885 999999999888887776655
No 9
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.53 E-value=1e+02 Score=22.96 Aligned_cols=28 Identities=4% Similarity=0.090 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHc
Q 011083 303 SSNIMKIAGMYNWKHGKKGSGVYWLQQA 330 (494)
Q Consensus 303 a~~I~k~~g~~~~~~g~~g~Al~w~~ra 330 (494)
...+...+|.-..+.|+|.+|+.++-++
T Consensus 71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~a 98 (122)
T d1nzna_ 71 QRDYVFYLAVGNYRLKEYEKALKYVRGL 98 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3456677888888999999999998876
No 10
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.13 E-value=19 Score=23.66 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 011083 288 LKNLEICRLYELDSVSSNIMKIA 310 (494)
Q Consensus 288 ~k~l~iC~~~~L~~~a~~I~k~~ 310 (494)
-++++||+++|+.+...+++...
T Consensus 10 ~ri~~I~~k~Gl~e~~~dV~~lI 32 (50)
T d1h3oa_ 10 RRILEIGKKHGITELHPDVVSYV 32 (50)
T ss_dssp HHHHHHHHTTTCCEECTTHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHH
Confidence 46999999999999777766443
Done!