BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011084
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 173/488 (35%), Positives = 282/488 (57%), Gaps = 24/488 (4%)
Query: 14 LQQLRSLYQPELPPCLQG--TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
+Q R Y P+LP L+ + + +G++T D ++ F +TYG P+ F
Sbjct: 6 FKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQ--DRQALKEFFKNTYGLPIISFTEG 63
Query: 72 TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXX 131
+ + ++ A+ +GI+ G +PGGHNV+ G++DA+K NP S
Sbjct: 64 ESSLSFSK------ALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGL 117
Query: 132 XAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191
+E+T+ ++++Y+N GG+D++ + +I T E N AL K NL+ ++IIGG
Sbjct: 118 LENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDD 177
Query: 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
SNT+AA LAE F + +V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C D
Sbjct: 178 SNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRD 237
Query: 252 ALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 311
A+S +KY++F++LMGR ASHVALEC L++HPN+ I+ EEV A K TL ++ ++ +
Sbjct: 238 AMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILK 297
Query: 312 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLR------QGVPVDNIS----SQLSP 361
R+ N GV+++PEGLIE IPEV +L+ E+ + +G+ ++ + ++LS
Sbjct: 298 RSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSD 357
Query: 362 WASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 418
+ ++ LP FI+ +L +L+ + + +S++ TEKL +++ +N K G YKG
Sbjct: 358 YMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG 417
Query: 419 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 478
F + HFFGY+ R + PS FD DY Y LG+ ++ GL GYM+ + NL W
Sbjct: 418 -SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWI 476
Query: 479 CGAAPITV 486
G P+T+
Sbjct: 477 AGGVPLTM 484
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 21/242 (8%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + V + H+ + + LE+ +
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELGS--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K L ++GLV+IGG D +Y+ A+ E
Sbjct: 61 IHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGG-----DGSYMGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 266
P VGVP T++ D+ + +GFDT I + A S E+ Y I +MG
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMG 170
Query: 267 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326
R A +AL L +++ E +D+ +I ++ E+ K H +I++ E
Sbjct: 171 RHAGDIALWAGLAGGAESILIPE-------ADYDM-HEIIARLKRGHERGKKHSIIIVAE 222
Query: 327 GL 328
G+
Sbjct: 223 GV 224
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 21/242 (8%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K ++GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGG-----DGSYQGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 266
P VGVP T++ D+ + +GFDT I + A S E+ Y I +MG
Sbjct: 116 GFP--CVGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMG 170
Query: 267 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326
R A +AL L +++ E +D+ I + E+ K H +I++ E
Sbjct: 171 RHAGDIALWSGLAGGAETILIPE-------ADYDMNDVIARLKRGH-ERGKKHSIIIVAE 222
Query: 327 GL 328
G+
Sbjct: 223 GV 224
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 21/242 (8%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K + GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGG-----DGSYQGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 266
P VGVP T++ D+ + +GFDT I + A S E+ Y I +MG
Sbjct: 116 GFP--CVGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMG 170
Query: 267 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326
R A +AL L +++ E +D+ I + E+ K H +I++ E
Sbjct: 171 RHAGDIALWSGLAGGAETILIPE-------ADYDMNDVIARLKRGH-ERGKKHSIIIVAE 222
Query: 327 GL 328
G+
Sbjct: 223 GV 224
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 21/242 (8%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 206
++GG + + +T E + K ++GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGG-----DGSYQGAKKLTEH 115
Query: 207 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 266
P VGVP T++ D+ + +GFDT I + A S E+ + I +MG
Sbjct: 116 GFP--CVGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMG 170
Query: 267 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326
R A +AL L +++ E +D+ I + E+ K H +I++ E
Sbjct: 171 RHAGDIALYSGLAGGAETILIPE-------ADYDMNDVIARLKRGH-ERGKKHSIIIVAE 222
Query: 327 GL 328
G+
Sbjct: 223 GV 224
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVET 230
A + K +D +V+IGG S A L + +G+P T++ D+ + +
Sbjct: 84 AGIEQLKKHGIDAVVVIGGDGSYHGALQLT------RHGFNSIGLPGTIDNDIP--YTDA 135
Query: 231 NVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEE 290
+G+DT C I + D S+ + + +MGR +A+ + + +++ E
Sbjct: 136 TIGYDTACMTAMDAIDKI-RDTASSHHRVFIVNVMGRNCGDIAMRVGVACGADAIVIPER 194
Query: 291 VAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLI 329
+D+ ++I + ++ E K+HG++++ EG++
Sbjct: 195 P-------YDV-EEIANRLKQAQESGKDHGLVVVAEGVM 225
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 10/187 (5%)
Query: 89 VGIVFCGRQSPGGHNVVWGL-YDALKLHNPKSTXXXXXX--XXXXXXAQKTLEVTKEILS 145
+GIV CG PG ++V+ + + ++N K +Q +E+ + ++
Sbjct: 100 IGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVT 159
Query: 146 TYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE 205
+ GG +LG ++ E V+ + L ++ L +GG + A +++
Sbjct: 160 NIHHYGG-TILGSSRGPQDPKEMVDT----LERLGVNILFTVGGDGTQRGALVISQEAKR 214
Query: 206 AKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLM 265
V GVP T++ DL F GF T + Q I +A+SA ++LM
Sbjct: 215 RGVDISVFGVPKTIDNDL--SFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLM 272
Query: 266 GRRASHV 272
GR + +
Sbjct: 273 GRDSGFI 279
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 33/248 (13%)
Query: 134 QKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNA-ALTACKNLNLDGLVIIGGVTS 192
+ +++ + +S N+GG LG + E + A A+ K +D LV+IGG
Sbjct: 48 DRMVQLDRYSVSDMINRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGG--- 103
Query: 193 NTDAAYL-AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
D +Y+ A E P +G+P T++ D+K + +GF T + I + D
Sbjct: 104 --DGSYMGAMRLTEMGFPC--IGLPGTIDNDIKG--TDYTIGFFTALSTVVEAIDRL-RD 156
Query: 252 ALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 311
S+ + + +MGR + L + V++ EV S+ + + + ++A
Sbjct: 157 TSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVV-PEVEFSR-------EDLVNEIKA 208
Query: 312 RAEQDKNHGVILLPEGLIESIPEVYALLKE---------IHSLLRQG--VPVDNI-SSQL 359
+ K H ++ + E + + + + KE + + R G VP D I +S++
Sbjct: 209 GIAKGKKHAIVAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRM 268
Query: 360 SPWASALF 367
+A L
Sbjct: 269 GAYAIDLL 276
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 147 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE---TF 203
+ QGG + + ++ EQ++A +T N+ GLVIIGG + T L E F
Sbjct: 459 WTGQGGSKLGSKRTLPKKSFEQISANIT---KFNIQGLVIIGGFEAYTGGLELMEGRKQF 515
Query: 204 AEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIR 263
E P V+ V+ N + V + +TIC ++ + A ++ + I
Sbjct: 516 DELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQS----AAGTKRRVFIIE 571
Query: 264 LMGRRASHVA 273
MG ++A
Sbjct: 572 TMGGYCGYLA 581
>pdb|1I4G|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4G|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4H|A Chain A, Crystal Structure Of Zn2+ Soaked Staphylococcal
Enterotoxin A Mutant H187a
pdb|1I4H|B Chain B, Crystal Structure Of Zn2+ Soaked Staphylococcal
Enterotoxin A Mutant H187a
Length = 233
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 416 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH 450
YKGKK + ++GYQ G P+K C Y V H
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLH 114
>pdb|1LO5|D Chain D, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
Length = 233
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 416 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH 450
YKGKK + ++GYQ G P+K C Y V H
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLH 114
>pdb|1ESF|A Chain A, Staphylococcal Enterotoxin A
pdb|1ESF|B Chain B, Staphylococcal Enterotoxin A
pdb|1SXT|A Chain A, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
pdb|1SXT|B Chain B, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
Length = 233
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 416 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH 450
YKGKK + ++GYQ G P+K C Y V H
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLH 114
>pdb|3N0S|A Chain A, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|D Chain D, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|C Chain C, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|B Chain B, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
Length = 268
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVALSEVRSG 193
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|3E4F|A Chain A, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
pdb|3E4F|B Chain B, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
Length = 265
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 131 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSG 190
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 191 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 229
>pdb|3IJW|A Chain A, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3IJW|B Chain B, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3SLF|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
pdb|3SLF|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
Length = 268
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSG 193
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|3KZL|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|D Chain D, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|C Chain C, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3SLB|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|D Chain D, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|C Chain C, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
Length = 268
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 206
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVGLSEVRSG 193
Query: 207 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 244
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 436 LPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 485
+ SK D + AY +G G N M T+ + +W+ G A ++
Sbjct: 305 IASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLS 354
>pdb|1DYQ|A Chain A, Staphylococcal Enterotoxin A Mutant Vaccine
Length = 234
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 416 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH 450
YKGKK + + GYQ G P+K C Y V H
Sbjct: 81 YKGKKVDLYGAYAGYQCAGGTPNKTACMYGGVTLH 115
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 373
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 255 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 300
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 373
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 255 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 300
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 373
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 373
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 373
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|2Y9Z|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
Complex
Length = 624
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 303 KQICDAVQARAE--QDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGV 350
K++C +Q+R E K H V L EG + +LKEI + L+ V
Sbjct: 320 KKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKNAV 369
>pdb|2Y9Y|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 624
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 303 KQICDAVQARAE--QDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGV 350
K++C +Q+R E K H V L EG + +LKEI + L+ V
Sbjct: 320 KKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKNAV 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,881,109
Number of Sequences: 62578
Number of extensions: 541194
Number of successful extensions: 1318
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 38
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)