Query 011084
Match_columns 494
No_of_seqs 254 out of 1140
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02251 pyrophosphate-depende 100.0 6E-132 1E-136 1066.3 48.4 473 11-492 29-503 (568)
2 PLN03028 pyrophosphate--fructo 100.0 1E-131 3E-136 1070.7 49.0 484 9-492 2-485 (610)
3 cd00765 Pyrophosphate_PFK Phos 100.0 1E-129 3E-134 1046.2 49.1 476 9-493 1-489 (550)
4 PRK07085 diphosphate--fructose 100.0 2E-128 4E-133 1040.9 48.4 473 9-492 1-485 (555)
5 TIGR02477 PFKA_PPi diphosphate 100.0 2E-127 5E-132 1031.0 46.8 470 14-492 1-476 (539)
6 PTZ00468 phosphofructokinase f 100.0 1E-121 3E-126 1036.1 48.6 481 4-492 21-504 (1328)
7 PTZ00287 6-phosphofructokinase 100.0 2E-117 5E-122 1007.7 38.6 479 5-492 758-1274(1419)
8 PTZ00287 6-phosphofructokinase 100.0 2E-115 4E-120 991.8 46.6 474 4-492 96-575 (1419)
9 PTZ00468 phosphofructokinase f 100.0 3E-104 7E-109 894.7 41.2 474 6-492 581-1136(1328)
10 cd00363 PFK Phosphofructokinas 100.0 2.7E-85 5.9E-90 674.4 34.3 322 87-493 1-323 (338)
11 PRK14072 6-phosphofructokinase 100.0 1.2E-84 2.6E-89 684.6 36.7 343 86-493 3-361 (416)
12 PLN02564 6-phosphofructokinase 100.0 2.1E-82 4.5E-87 670.4 38.4 358 65-492 69-427 (484)
13 COG0205 PfkA 6-phosphofructoki 100.0 1.2E-82 2.6E-87 650.5 31.3 320 86-491 2-323 (347)
14 PTZ00286 6-phospho-1-fructokin 100.0 3.5E-81 7.5E-86 662.1 37.8 346 66-487 70-416 (459)
15 PLN02884 6-phosphofructokinase 100.0 4.9E-81 1.1E-85 653.7 36.2 344 76-493 43-390 (411)
16 PRK06830 diphosphate--fructose 100.0 1.1E-80 2.3E-85 655.2 37.6 356 62-492 59-418 (443)
17 TIGR02483 PFK_mixed phosphofru 100.0 2.4E-80 5.1E-85 633.5 34.0 320 88-487 1-323 (324)
18 PRK03202 6-phosphofructokinase 100.0 1.8E-79 4E-84 625.6 35.2 302 87-492 2-305 (320)
19 TIGR02482 PFKA_ATP 6-phosphofr 100.0 3.7E-79 7.9E-84 618.3 34.1 299 88-487 1-300 (301)
20 PRK14071 6-phosphofructokinase 100.0 8.4E-79 1.8E-83 630.1 35.7 327 85-493 3-340 (360)
21 cd00763 Bacterial_PFK Phosphof 100.0 1.7E-78 3.8E-83 617.7 34.9 303 87-493 1-304 (317)
22 PRK06555 pyrophosphate--fructo 100.0 2.4E-78 5.2E-83 628.7 35.5 336 86-489 3-378 (403)
23 TIGR02478 6PF1K_euk 6-phosphof 100.0 2.1E-74 4.5E-79 641.3 35.7 320 87-494 1-343 (745)
24 PF00365 PFK: Phosphofructokin 100.0 1.5E-74 3.3E-79 581.2 31.3 281 87-458 1-282 (282)
25 cd00764 Eukaryotic_PFK Phospho 100.0 1.4E-73 3.1E-78 631.9 35.0 321 85-493 2-345 (762)
26 TIGR02478 6PF1K_euk 6-phosphof 100.0 3.5E-73 7.7E-78 631.4 35.3 325 83-491 386-743 (745)
27 cd00764 Eukaryotic_PFK Phospho 100.0 5.4E-70 1.2E-74 603.5 32.8 326 82-491 385-743 (762)
28 KOG2440 Pyrophosphate-dependen 100.0 9.9E-49 2.1E-53 422.0 5.9 474 10-491 45-542 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 6E-36 1.3E-40 323.2 18.4 283 91-460 1-303 (666)
30 PRK04761 ppnK inorganic polyph 91.4 0.46 9.9E-06 47.6 6.3 66 166-248 5-79 (246)
31 PRK00561 ppnK inorganic polyph 91.0 0.36 7.9E-06 48.7 5.3 65 167-248 15-87 (259)
32 PRK04885 ppnK inorganic polyph 90.8 0.81 1.8E-05 46.3 7.6 69 166-249 14-91 (265)
33 PRK14077 pnk inorganic polypho 90.6 1.1 2.3E-05 45.9 8.4 53 180-249 64-118 (287)
34 cd01537 PBP1_Repressors_Sugar_ 89.5 14 0.00031 34.9 14.8 114 88-249 1-114 (264)
35 COG3199 Predicted inorganic po 87.9 0.76 1.6E-05 47.9 5.0 74 164-251 84-157 (355)
36 PF01513 NAD_kinase: ATP-NAD k 87.5 0.51 1.1E-05 48.0 3.4 60 174-250 70-131 (285)
37 PF00465 Fe-ADH: Iron-containi 87.0 1.4 3E-05 46.3 6.4 57 165-221 63-133 (366)
38 PRK01911 ppnK inorganic polyph 86.2 1.7 3.7E-05 44.6 6.5 54 180-250 64-119 (292)
39 PRK14075 pnk inorganic polypho 85.9 1.4 3.1E-05 44.2 5.7 50 180-249 41-92 (256)
40 PLN02929 NADH kinase 85.5 0.99 2.1E-05 46.6 4.3 64 180-249 64-135 (301)
41 PRK02649 ppnK inorganic polyph 85.3 1.7 3.8E-05 44.9 6.0 53 180-249 68-122 (305)
42 cd08180 PDD 1,3-propanediol de 85.2 2.4 5.2E-05 43.9 7.1 54 165-218 63-118 (332)
43 PRK04539 ppnK inorganic polyph 85.1 1.9 4.2E-05 44.3 6.2 53 180-249 68-122 (296)
44 PF02844 GARS_N: Phosphoribosy 84.7 3.7 8E-05 35.6 6.8 93 87-216 1-93 (100)
45 PRK03378 ppnK inorganic polyph 84.2 2.6 5.7E-05 43.3 6.7 43 180-239 63-105 (292)
46 PRK03372 ppnK inorganic polyph 84.0 1.9 4.1E-05 44.6 5.7 53 180-249 72-126 (306)
47 PRK03708 ppnK inorganic polyph 83.6 2 4.4E-05 43.7 5.6 43 179-239 56-98 (277)
48 cd08189 Fe-ADH5 Iron-containin 83.5 3.3 7.3E-05 43.6 7.4 55 165-219 68-136 (374)
49 PLN02935 Bifunctional NADH kin 83.5 2.3 5E-05 46.8 6.2 53 180-249 262-316 (508)
50 cd08551 Fe-ADH iron-containing 83.0 3.3 7.1E-05 43.5 7.1 56 165-220 65-133 (370)
51 cd08177 MAR Maleylacetate redu 82.8 2.9 6.3E-05 43.5 6.5 53 165-222 62-114 (337)
52 cd06321 PBP1_ABC_sugar_binding 82.6 40 0.00088 32.6 14.2 103 88-236 1-103 (271)
53 cd08172 GlyDH-like1 Glycerol d 81.8 3.6 7.7E-05 43.0 6.8 53 164-221 60-112 (347)
54 PRK00843 egsA NAD(P)-dependent 81.7 3.5 7.6E-05 43.1 6.7 54 164-222 71-124 (350)
55 PRK03501 ppnK inorganic polyph 81.3 3.3 7.1E-05 41.9 6.1 68 167-249 17-95 (264)
56 PRK15454 ethanol dehydrogenase 80.8 4.3 9.3E-05 43.3 7.0 54 165-218 91-157 (395)
57 cd08186 Fe-ADH8 Iron-containin 80.8 4.9 0.00011 42.6 7.5 54 165-218 69-136 (383)
58 cd08170 GlyDH Glycerol dehydro 80.4 3.6 7.7E-05 42.9 6.2 50 165-219 62-111 (351)
59 cd07766 DHQ_Fe-ADH Dehydroquin 80.2 4.4 9.5E-05 41.8 6.7 55 165-222 63-117 (332)
60 cd08193 HVD 5-hydroxyvalerate 80.1 4.8 0.0001 42.4 7.1 55 165-219 68-135 (376)
61 cd08179 NADPH_BDH NADPH-depend 80.0 5 0.00011 42.4 7.2 37 165-201 66-102 (375)
62 TIGR02638 lactal_redase lactal 79.3 5.2 0.00011 42.3 7.1 54 165-218 71-139 (379)
63 cd08185 Fe-ADH1 Iron-containin 79.3 5 0.00011 42.4 6.9 55 165-219 68-140 (380)
64 PRK09860 putative alcohol dehy 79.2 5.7 0.00012 42.2 7.4 55 165-219 73-140 (383)
65 PRK01231 ppnK inorganic polyph 79.1 4.3 9.2E-05 41.8 6.1 53 180-249 62-116 (295)
66 cd08173 Gro1PDH Sn-glycerol-1- 79.0 4.7 0.0001 41.9 6.5 55 165-224 63-117 (339)
67 PRK14076 pnk inorganic polypho 78.9 7.1 0.00015 43.8 8.3 52 180-248 348-401 (569)
68 cd08178 AAD_C C-terminal alcoh 78.8 5.7 0.00012 42.3 7.2 36 165-200 63-98 (398)
69 cd08176 LPO Lactadehyde:propan 78.5 5.7 0.00012 41.9 7.1 55 165-219 70-137 (377)
70 PRK02231 ppnK inorganic polyph 78.5 2.4 5.2E-05 43.1 4.0 43 180-239 42-84 (272)
71 cd08181 PPD-like 1,3-propanedi 78.5 6.2 0.00013 41.4 7.3 55 165-219 68-134 (357)
72 cd08182 HEPD Hydroxyethylphosp 78.3 5.8 0.00012 41.7 7.0 55 165-219 62-133 (367)
73 cd08194 Fe-ADH6 Iron-containin 78.3 5.9 0.00013 41.8 7.1 54 165-218 65-131 (375)
74 PF07905 PucR: Purine cataboli 78.0 10 0.00023 33.5 7.5 96 117-217 10-107 (123)
75 TIGR01357 aroB 3-dehydroquinat 77.5 5.5 0.00012 41.5 6.5 52 165-219 63-117 (344)
76 PRK15138 aldehyde reductase; P 76.6 7 0.00015 41.6 7.1 37 165-201 70-106 (387)
77 cd08184 Fe-ADH3 Iron-containin 76.5 7.7 0.00017 40.8 7.2 55 165-219 63-133 (347)
78 cd08195 DHQS Dehydroquinate sy 76.1 6.2 0.00013 41.2 6.4 52 165-219 67-121 (345)
79 cd08171 GlyDH-like2 Glycerol d 76.0 6 0.00013 41.3 6.3 50 165-219 63-112 (345)
80 cd08183 Fe-ADH2 Iron-containin 75.3 7.6 0.00016 41.0 6.9 54 165-218 60-130 (374)
81 PRK09423 gldA glycerol dehydro 75.0 6.4 0.00014 41.4 6.2 49 165-218 69-117 (366)
82 PRK00002 aroB 3-dehydroquinate 74.0 7.3 0.00016 40.9 6.4 52 165-219 74-128 (358)
83 PRK10624 L-1,2-propanediol oxi 73.7 9.4 0.0002 40.4 7.1 54 165-218 72-140 (382)
84 cd08192 Fe-ADH7 Iron-containin 72.8 10 0.00022 39.8 7.1 55 165-219 66-137 (370)
85 TIGR03405 Phn_Fe-ADH phosphona 71.6 12 0.00025 39.3 7.2 37 165-201 63-101 (355)
86 PF13407 Peripla_BP_4: Peripla 71.5 53 0.0011 31.5 11.4 173 89-309 1-178 (257)
87 cd08550 GlyDH-like Glycerol_de 71.5 9.8 0.00021 39.7 6.6 53 165-222 62-114 (349)
88 cd08196 DHQS-like1 Dehydroquin 71.2 11 0.00023 39.8 6.7 67 165-239 58-127 (346)
89 cd08199 EEVS 2-epi-5-epi-valio 71.1 10 0.00022 39.9 6.7 53 164-219 68-124 (354)
90 TIGR01918 various_sel_PB selen 71.0 23 0.0005 38.2 9.2 160 48-215 183-370 (431)
91 cd08191 HHD 6-hydroxyhexanoate 70.8 12 0.00026 39.6 7.2 53 166-218 65-130 (386)
92 PRK11914 diacylglycerol kinase 70.6 13 0.00029 37.8 7.2 61 166-236 50-110 (306)
93 cd08187 BDH Butanol dehydrogen 70.3 12 0.00026 39.6 7.0 55 165-219 71-138 (382)
94 cd08175 G1PDH Glycerol-1-phosp 70.3 9.1 0.0002 39.9 6.0 49 164-218 65-113 (348)
95 cd08549 G1PDH_related Glycerol 69.8 11 0.00025 39.0 6.6 52 165-222 66-117 (332)
96 cd08197 DOIS 2-deoxy-scyllo-in 69.7 11 0.00023 39.8 6.4 52 165-219 66-120 (355)
97 PLN02727 NAD kinase 69.7 5.6 0.00012 46.7 4.6 53 180-249 743-797 (986)
98 COG1454 EutG Alcohol dehydroge 69.6 13 0.00028 39.7 6.9 54 165-218 71-137 (377)
99 PRK02155 ppnK NAD(+)/NADH kina 69.6 5.3 0.00011 41.0 4.0 53 180-249 63-117 (291)
100 cd08190 HOT Hydroxyacid-oxoaci 69.5 13 0.00027 40.0 7.0 36 165-200 65-100 (414)
101 TIGR00147 lipid kinase, YegS/R 69.4 9.2 0.0002 38.6 5.7 45 175-224 52-98 (293)
102 COG0504 PyrG CTP synthase (UTP 68.9 4.5 9.7E-05 44.3 3.4 132 134-287 295-438 (533)
103 cd08188 Fe-ADH4 Iron-containin 68.9 14 0.00031 39.0 7.2 55 165-219 70-137 (377)
104 PRK01185 ppnK inorganic polyph 68.5 9.5 0.00021 38.8 5.5 50 180-249 52-103 (271)
105 PRK06186 hypothetical protein; 68.1 6.6 0.00014 39.0 4.2 58 180-255 53-112 (229)
106 COG0061 nadF NAD kinase [Coenz 67.6 14 0.0003 37.6 6.6 57 179-254 54-110 (281)
107 PRK13951 bifunctional shikimat 67.0 6.9 0.00015 43.1 4.5 113 119-240 172-289 (488)
108 TIGR01917 gly_red_sel_B glycin 66.6 31 0.00068 37.3 9.0 160 48-215 183-370 (431)
109 PLN02834 3-dehydroquinate synt 66.1 14 0.00031 40.0 6.6 53 164-219 144-199 (433)
110 cd08169 DHQ-like Dehydroquinat 65.9 15 0.00034 38.4 6.7 52 165-219 65-119 (344)
111 PRK13054 lipid kinase; Reviewe 65.8 15 0.00032 37.5 6.4 60 170-236 46-106 (300)
112 PRK07360 FO synthase subunit 2 65.5 1.7E+02 0.0037 30.9 14.5 195 85-293 107-331 (371)
113 TIGR03822 AblA_like_2 lysine-2 65.4 1.4E+02 0.003 31.0 13.5 166 90-268 139-310 (321)
114 COG0371 GldA Glycerol dehydrog 65.2 13 0.00029 39.3 6.0 56 165-225 69-124 (360)
115 cd06305 PBP1_methylthioribose_ 64.7 1.4E+02 0.0029 28.7 15.3 127 88-263 1-127 (273)
116 PF02401 LYTB: LytB protein; 64.4 17 0.00036 37.3 6.4 50 166-217 196-245 (281)
117 cd08198 DHQS-like2 Dehydroquin 64.4 17 0.00036 38.7 6.6 50 166-218 82-134 (369)
118 PF02601 Exonuc_VII_L: Exonucl 63.5 67 0.0014 33.0 10.7 95 82-213 10-111 (319)
119 cd07995 TPK Thiamine pyrophosp 63.5 55 0.0012 31.5 9.6 101 91-202 2-117 (208)
120 PRK13337 putative lipid kinase 63.1 13 0.00029 37.9 5.4 59 169-236 46-105 (304)
121 cd01391 Periplasmic_Binding_Pr 62.1 1.2E+02 0.0025 28.1 11.4 77 167-248 45-122 (269)
122 cd06281 PBP1_LacI_like_5 Ligan 61.9 82 0.0018 30.4 10.6 90 88-220 1-90 (269)
123 COG1844 Uncharacterized protei 61.6 94 0.002 27.8 9.5 90 183-291 2-91 (125)
124 PF00781 DAGK_cat: Diacylglyce 60.5 14 0.00031 32.6 4.5 52 181-240 55-108 (130)
125 PRK10586 putative oxidoreducta 60.1 19 0.00042 38.0 6.2 56 165-226 72-127 (362)
126 PRK06203 aroB 3-dehydroquinate 59.5 19 0.00042 38.4 6.1 50 166-218 94-146 (389)
127 cd01538 PBP1_ABC_xylose_bindin 59.2 74 0.0016 31.4 9.9 103 88-236 1-103 (288)
128 PRK13055 putative lipid kinase 58.5 19 0.00041 37.4 5.7 58 170-236 49-107 (334)
129 TIGR00237 xseA exodeoxyribonuc 58.3 77 0.0017 34.4 10.5 102 82-220 125-231 (432)
130 PRK13805 bifunctional acetalde 57.0 27 0.00059 41.1 7.3 36 165-200 524-559 (862)
131 PRK02645 ppnK inorganic polyph 56.9 13 0.00027 38.4 4.0 54 180-249 57-113 (305)
132 PRK13057 putative lipid kinase 56.1 29 0.00063 35.0 6.4 59 166-236 37-96 (287)
133 PRK00286 xseA exodeoxyribonucl 56.0 78 0.0017 34.1 10.1 102 83-221 132-237 (438)
134 COG1570 XseA Exonuclease VII, 54.4 93 0.002 33.9 10.1 95 83-214 132-230 (440)
135 TIGR00519 asnASE_I L-asparagin 53.7 85 0.0018 32.9 9.6 49 165-215 60-110 (336)
136 cd06298 PBP1_CcpA_like Ligand- 53.2 65 0.0014 30.9 8.2 69 166-245 41-111 (268)
137 cd06320 PBP1_allose_binding Pe 53.1 1.2E+02 0.0026 29.2 10.2 92 88-219 1-92 (275)
138 PRK13059 putative lipid kinase 53.0 28 0.0006 35.4 5.8 51 178-236 54-104 (295)
139 KOG2387 CTP synthase (UTP-ammo 53.0 32 0.00069 37.5 6.2 72 165-256 350-423 (585)
140 cd08174 G1PDH-like Glycerol-1- 52.3 28 0.00061 36.0 5.8 53 167-224 61-114 (331)
141 TIGR03702 lip_kinase_YegS lipi 51.9 34 0.00074 34.7 6.2 59 170-235 42-101 (293)
142 TIGR01162 purE phosphoribosyla 51.9 37 0.00081 31.8 5.9 49 164-218 37-85 (156)
143 PF13685 Fe-ADH_2: Iron-contai 51.3 18 0.0004 36.3 4.0 55 165-224 60-114 (250)
144 COG2910 Putative NADH-flavin r 50.9 71 0.0015 31.1 7.7 94 87-194 1-110 (211)
145 PF04392 ABC_sub_bind: ABC tra 50.7 2.2E+02 0.0048 28.6 11.9 89 88-217 1-89 (294)
146 cd06299 PBP1_LacI_like_13 Liga 50.1 1.1E+02 0.0023 29.4 9.1 100 88-236 1-100 (265)
147 PRK13849 putative crown gall t 49.8 1.6E+02 0.0035 28.9 10.4 96 188-292 11-116 (231)
148 PRK05670 anthranilate synthase 49.2 29 0.00063 32.8 4.9 50 177-241 40-89 (189)
149 cd06315 PBP1_ABC_sugar_binding 48.4 1.2E+02 0.0026 29.7 9.4 67 87-191 1-67 (280)
150 PRK12361 hypothetical protein; 47.9 27 0.00059 38.8 5.1 58 169-236 286-344 (547)
151 PRK00861 putative lipid kinase 47.2 33 0.0007 34.9 5.2 56 170-236 47-103 (300)
152 cd06289 PBP1_MalI_like Ligand- 46.6 1E+02 0.0022 29.4 8.4 60 166-235 41-100 (268)
153 PLN02327 CTP synthase 46.4 20 0.00044 40.0 3.8 69 167-255 351-421 (557)
154 PF01761 DHQ_synthase: 3-dehyd 46.1 36 0.00079 34.4 5.3 110 163-310 9-121 (260)
155 cd06290 PBP1_LacI_like_9 Ligan 46.0 2.7E+02 0.0059 26.5 13.0 27 166-192 41-67 (265)
156 PRK12767 carbamoyl phosphate s 45.8 3E+02 0.0064 27.8 12.0 48 165-215 54-101 (326)
157 PF00731 AIRC: AIR carboxylase 45.7 37 0.0008 31.6 4.8 47 165-217 40-86 (150)
158 PF00710 Asparaginase: Asparag 45.5 1.8E+02 0.0039 30.0 10.4 62 165-227 55-118 (313)
159 smart00046 DAGKc Diacylglycero 45.1 35 0.00077 30.0 4.5 42 180-224 49-93 (124)
160 PF04263 TPK_catalytic: Thiami 44.6 57 0.0012 29.1 5.7 86 118-208 16-116 (123)
161 TIGR00566 trpG_papA glutamine 44.3 35 0.00077 32.3 4.7 53 175-242 38-90 (188)
162 PLN02958 diacylglycerol kinase 44.3 54 0.0012 36.1 6.7 101 118-225 111-215 (481)
163 PRK05637 anthranilate synthase 44.1 48 0.001 32.2 5.6 54 174-242 38-91 (208)
164 PRK14021 bifunctional shikimat 44.0 50 0.0011 36.8 6.5 52 165-219 251-305 (542)
165 PLN02735 carbamoyl-phosphate s 43.3 1.7E+02 0.0037 35.8 11.1 47 169-215 638-692 (1102)
166 CHL00101 trpG anthranilate syn 42.5 36 0.00077 32.3 4.4 50 176-240 39-88 (190)
167 KOG1838 Alpha/beta hydrolase [ 42.4 3.1E+02 0.0068 29.7 11.8 100 89-215 126-228 (409)
168 COG4981 Enoyl reductase domain 42.3 2.4E+02 0.0051 31.9 10.8 93 171-287 112-217 (717)
169 PRK05647 purN phosphoribosylgl 41.7 1E+02 0.0022 29.9 7.4 18 171-188 71-88 (200)
170 TIGR00288 conserved hypothetic 41.3 21 0.00046 33.5 2.5 53 168-223 90-145 (160)
171 cd06283 PBP1_RegR_EndR_KdgR_li 40.7 2E+02 0.0044 27.3 9.5 99 89-236 2-100 (267)
172 TIGR03127 RuMP_HxlB 6-phospho 40.5 2.7E+02 0.0059 25.6 10.0 55 165-223 16-70 (179)
173 TIGR03107 glu_aminopep glutamy 40.5 1.5E+02 0.0032 31.4 8.9 54 160-217 259-312 (350)
174 TIGR00238 KamA family protein. 40.4 3.4E+02 0.0073 28.3 11.6 161 89-266 161-331 (331)
175 PRK10355 xylF D-xylose transpo 40.3 3.4E+02 0.0075 27.7 11.6 94 85-220 24-117 (330)
176 KOG3857 Alcohol dehydrogenase, 40.0 61 0.0013 34.4 5.8 38 165-202 112-149 (465)
177 cd01542 PBP1_TreR_like Ligand- 39.6 2E+02 0.0044 27.2 9.3 83 89-215 2-84 (259)
178 PLN02821 1-hydroxy-2-methyl-2- 39.5 64 0.0014 35.3 6.1 53 167-220 349-401 (460)
179 PRK05294 carB carbamoyl phosph 39.2 1.8E+02 0.0039 35.3 10.5 46 169-220 618-665 (1066)
180 TIGR00215 lpxB lipid-A-disacch 39.0 55 0.0012 34.6 5.6 109 91-213 8-117 (385)
181 TIGR02153 gatD_arch glutamyl-t 38.6 1.4E+02 0.003 32.3 8.5 51 165-216 121-174 (404)
182 cd06308 PBP1_sensor_kinase_lik 38.5 3.6E+02 0.0079 25.8 12.7 45 167-215 43-87 (270)
183 PRK15458 tagatose 6-phosphate 38.5 5.6E+02 0.012 28.0 13.8 130 87-252 15-159 (426)
184 COG0414 PanC Panthothenate syn 38.4 45 0.00097 34.1 4.4 48 240-288 6-54 (285)
185 TIGR00732 dprA DNA protecting 38.0 3E+02 0.0066 26.9 10.2 139 60-221 26-193 (220)
186 cd06307 PBP1_uncharacterized_s 38.0 1.8E+02 0.0039 28.1 8.7 60 167-235 46-105 (275)
187 PRK13371 4-hydroxy-3-methylbut 37.8 84 0.0018 33.7 6.6 56 166-222 274-329 (387)
188 PRK02261 methylaspartate mutas 37.8 2.9E+02 0.0063 25.0 9.3 116 86-218 3-121 (137)
189 cd06310 PBP1_ABC_sugar_binding 37.8 2E+02 0.0044 27.6 9.1 46 166-215 43-88 (273)
190 PF04009 DUF356: Protein of un 37.7 2.2E+02 0.0048 25.1 7.9 39 184-224 1-39 (107)
191 PRK15408 autoinducer 2-binding 37.7 4.8E+02 0.01 26.9 14.5 107 86-237 23-129 (336)
192 cd01574 PBP1_LacI Ligand-bindi 37.6 3.6E+02 0.0079 25.6 10.9 85 89-216 2-86 (264)
193 cd01575 PBP1_GntR Ligand-bindi 37.5 93 0.002 29.7 6.5 83 89-215 2-84 (268)
194 PRK06774 para-aminobenzoate sy 37.3 39 0.00084 32.0 3.7 50 176-240 39-88 (191)
195 PRK03910 D-cysteine desulfhydr 37.2 3.5E+02 0.0075 27.9 11.1 51 169-221 52-102 (331)
196 cd01391 Periplasmic_Binding_Pr 36.4 1.9E+02 0.0041 26.6 8.3 104 105-218 112-219 (269)
197 cd06167 LabA_like LabA_like pr 36.3 59 0.0013 29.0 4.6 43 171-216 90-132 (149)
198 cd00537 MTHFR Methylenetetrahy 35.3 63 0.0014 32.4 5.1 75 140-216 46-137 (274)
199 TIGR02637 RhaS rhamnose ABC tr 34.7 3.3E+02 0.0071 26.9 10.2 46 166-215 42-87 (302)
200 cd06292 PBP1_LacI_like_10 Liga 33.4 2E+02 0.0043 27.7 8.1 90 89-219 2-93 (273)
201 PRK12390 1-aminocyclopropane-1 33.4 3.6E+02 0.0077 27.9 10.4 44 169-213 55-98 (337)
202 PRK08445 hypothetical protein; 33.4 4.3E+02 0.0094 27.7 11.1 115 90-206 92-223 (348)
203 cd06306 PBP1_TorT-like TorT-li 33.2 1.3E+02 0.0027 29.3 6.8 45 166-215 43-87 (268)
204 PF04405 ScdA_N: Domain of Unk 33.2 47 0.001 25.6 2.9 28 168-197 11-38 (56)
205 PRK11096 ansB L-asparaginase I 33.2 98 0.0021 32.7 6.2 49 165-215 83-133 (347)
206 cd06319 PBP1_ABC_sugar_binding 33.2 3.6E+02 0.0079 25.8 10.0 86 88-215 1-86 (277)
207 KOG4435 Predicted lipid kinase 32.9 86 0.0019 33.9 5.6 54 164-220 101-154 (535)
208 PRK12360 4-hydroxy-3-methylbut 32.9 44 0.00094 34.3 3.4 55 166-222 196-250 (281)
209 PRK01045 ispH 4-hydroxy-3-meth 32.7 90 0.0019 32.3 5.7 80 167-248 198-279 (298)
210 cd05005 SIS_PHI Hexulose-6-pho 32.6 4E+02 0.0087 24.6 10.1 48 165-216 19-66 (179)
211 PLN02335 anthranilate synthase 32.5 65 0.0014 31.5 4.5 49 176-239 58-106 (222)
212 cd06314 PBP1_tmGBP Periplasmic 32.1 3.6E+02 0.0078 25.9 9.8 44 167-215 42-85 (271)
213 PRK04155 chaperone protein Hch 32.1 4.4E+02 0.0095 27.0 10.6 39 169-207 134-180 (287)
214 cd06278 PBP1_LacI_like_2 Ligan 31.8 1.2E+02 0.0026 28.9 6.2 56 169-235 43-98 (266)
215 PRK07094 biotin synthase; Prov 31.8 5.7E+02 0.012 26.0 13.0 105 91-208 90-209 (323)
216 PF00532 Peripla_BP_1: Peripla 31.6 82 0.0018 31.6 5.2 113 87-249 2-114 (279)
217 TIGR00216 ispH_lytB (E)-4-hydr 31.4 1E+02 0.0022 31.7 5.8 53 166-220 195-247 (280)
218 COG1609 PurR Transcriptional r 31.0 1.5E+02 0.0032 30.7 7.1 102 85-235 57-158 (333)
219 PRK06027 purU formyltetrahydro 30.9 2.3E+02 0.0049 29.0 8.3 63 48-125 61-123 (286)
220 PF12780 AAA_8: P-loop contain 30.8 4E+02 0.0087 27.0 10.0 103 234-350 13-117 (268)
221 PRK12815 carB carbamoyl phosph 30.6 2.2E+02 0.0047 34.7 9.3 102 85-215 554-660 (1068)
222 smart00729 Elp3 Elongator prot 30.4 4.1E+02 0.0089 24.0 11.4 45 165-209 134-182 (216)
223 PF00186 DHFR_1: Dihydrofolate 30.3 39 0.00084 31.6 2.4 53 168-228 79-131 (161)
224 PRK12815 carB carbamoyl phosph 30.0 2.2E+02 0.0047 34.6 9.2 108 84-216 5-119 (1068)
225 cd06273 PBP1_GntR_like_1 This 29.7 2.9E+02 0.0062 26.4 8.6 44 166-215 41-84 (268)
226 PRK03359 putative electron tra 29.7 1.4E+02 0.0031 30.1 6.5 53 171-224 71-128 (256)
227 cd03822 GT1_ecORF704_like This 29.3 3.3E+02 0.0071 26.7 9.1 112 88-219 1-115 (366)
228 TIGR00676 fadh2 5,10-methylene 29.3 91 0.002 31.5 5.1 57 158-216 66-134 (272)
229 PF13380 CoA_binding_2: CoA bi 29.2 1.3E+02 0.0028 26.3 5.4 44 165-214 64-107 (116)
230 cd00411 Asparaginase Asparagin 29.0 1.7E+02 0.0037 30.4 7.1 49 165-215 61-111 (323)
231 TIGR00655 PurU formyltetrahydr 29.0 2.9E+02 0.0062 28.2 8.6 37 84-125 82-118 (280)
232 PRK15395 methyl-galactoside AB 28.5 4.6E+02 0.01 26.6 10.2 93 85-218 23-115 (330)
233 PF01936 NYN: NYN domain; Int 28.4 36 0.00078 29.9 1.8 48 171-221 86-133 (146)
234 cd02072 Glm_B12_BD B12 binding 28.3 1.4E+02 0.0031 27.0 5.6 72 143-218 42-117 (128)
235 PRK07591 threonine synthase; V 28.0 1.9E+02 0.0041 31.2 7.5 145 170-329 126-286 (421)
236 TIGR03551 F420_cofH 7,8-dideme 27.9 4.3E+02 0.0093 27.4 9.9 118 86-207 87-221 (343)
237 cd06323 PBP1_ribose_binding Pe 27.7 5.3E+02 0.011 24.4 13.7 85 89-215 2-86 (268)
238 TIGR02634 xylF D-xylose ABC tr 27.1 6.3E+02 0.014 25.1 14.3 46 166-215 40-85 (302)
239 cd06533 Glyco_transf_WecG_TagA 27.0 1.5E+02 0.0033 27.6 5.9 88 86-189 46-133 (171)
240 cd01744 GATase1_CPSase Small c 27.0 1.2E+02 0.0026 28.3 5.1 50 177-243 36-88 (178)
241 COG3155 ElbB Uncharacterized p 27.0 55 0.0012 31.0 2.7 62 174-235 79-156 (217)
242 COG1105 FruK Fructose-1-phosph 26.8 4.7E+02 0.01 27.3 9.8 95 115-213 49-163 (310)
243 PF02569 Pantoate_ligase: Pant 26.8 1E+02 0.0022 31.6 4.9 39 250-288 15-54 (280)
244 COG0482 TrmU Predicted tRNA(5- 26.7 2.8E+02 0.006 29.5 8.2 66 86-186 3-69 (356)
245 PRK08007 para-aminobenzoate sy 26.7 82 0.0018 29.9 4.0 54 174-242 37-90 (187)
246 COG1979 Uncharacterized oxidor 26.6 86 0.0019 33.1 4.3 37 166-202 71-107 (384)
247 TIGR01378 thi_PPkinase thiamin 26.5 5.2E+02 0.011 24.8 9.6 81 119-202 19-113 (203)
248 PTZ00063 histone deacetylase; 26.5 1.6E+02 0.0034 32.3 6.4 73 149-227 256-331 (436)
249 PRK13010 purU formyltetrahydro 26.5 2.9E+02 0.0062 28.4 8.1 97 84-200 91-188 (289)
250 TIGR02810 agaZ_gatZ D-tagatose 26.3 8.8E+02 0.019 26.5 13.4 130 88-253 12-156 (420)
251 cd06284 PBP1_LacI_like_6 Ligan 26.1 3.6E+02 0.0078 25.5 8.5 84 89-217 2-85 (267)
252 smart00870 Asparaginase Aspara 26.0 1.7E+02 0.0036 30.4 6.4 50 165-215 58-111 (323)
253 PRK01372 ddl D-alanine--D-alan 25.8 2.2E+02 0.0047 28.6 7.2 36 86-124 4-42 (304)
254 cd02071 MM_CoA_mut_B12_BD meth 25.7 1.2E+02 0.0025 26.6 4.6 50 144-194 43-93 (122)
255 COG0685 MetF 5,10-methylenetet 25.7 1.8E+02 0.0039 29.8 6.5 73 136-210 60-143 (291)
256 TIGR01769 GGGP geranylgeranylg 25.6 2.1E+02 0.0046 27.9 6.7 54 167-222 11-66 (205)
257 TIGR02417 fruct_sucro_rep D-fr 25.4 1.7E+02 0.0036 29.3 6.2 104 85-236 59-162 (327)
258 PHA02728 uncharacterized prote 25.0 39 0.00084 30.5 1.3 14 214-227 43-56 (184)
259 TIGR00520 asnASE_II L-asparagi 24.9 1.6E+02 0.0034 31.1 6.1 49 165-215 86-138 (349)
260 cd06353 PBP1_BmpA_Med_like Per 24.8 5E+02 0.011 25.6 9.4 120 85-253 119-238 (258)
261 PRK07649 para-aminobenzoate/an 24.6 84 0.0018 30.1 3.7 78 140-241 12-89 (195)
262 PRK06895 putative anthranilate 24.0 1.2E+02 0.0025 28.7 4.5 48 180-242 43-90 (190)
263 PRK13789 phosphoribosylamine-- 23.9 3.6E+02 0.0078 29.1 8.7 96 85-216 3-99 (426)
264 COG4683 Uncharacterized protei 23.8 53 0.0011 29.0 1.8 56 21-101 36-91 (120)
265 PRK00139 murE UDP-N-acetylmura 23.7 7E+02 0.015 26.9 11.0 58 166-226 77-137 (460)
266 PF00289 CPSase_L_chain: Carba 23.7 59 0.0013 28.4 2.2 103 87-215 3-105 (110)
267 cd06277 PBP1_LacI_like_1 Ligan 23.5 1.9E+02 0.0042 27.7 6.1 58 167-236 45-102 (268)
268 TIGR00639 PurN phosphoribosylg 23.4 3.9E+02 0.0086 25.5 8.0 19 170-188 69-87 (190)
269 KOG4180 Predicted kinase [Gene 23.4 41 0.00089 35.2 1.3 72 137-216 45-136 (395)
270 PLN02735 carbamoyl-phosphate s 23.3 3E+02 0.0065 33.7 8.7 109 83-216 20-135 (1102)
271 COG0129 IlvD Dihydroxyacid deh 23.3 1.7E+02 0.0036 33.1 6.0 112 85-217 41-153 (575)
272 PRK04183 glutamyl-tRNA(Gln) am 23.3 2.2E+02 0.0048 30.9 6.9 49 165-216 134-186 (419)
273 KOG1342 Histone deacetylase co 23.1 1.3E+02 0.0028 32.3 4.9 69 152-227 261-331 (425)
274 TIGR00640 acid_CoA_mut_C methy 23.0 2.7E+02 0.0058 25.1 6.4 49 143-192 45-94 (132)
275 cd06335 PBP1_ABC_ligand_bindin 22.9 3.8E+02 0.0082 27.3 8.4 67 143-214 158-224 (347)
276 cd06275 PBP1_PurR Ligand-bindi 22.5 4.4E+02 0.0095 25.1 8.4 86 89-217 2-87 (269)
277 COG1597 LCB5 Sphingosine kinas 22.5 1.8E+02 0.0039 29.8 5.9 109 120-246 4-116 (301)
278 PRK00035 hemH ferrochelatase; 22.5 5.7E+02 0.012 26.3 9.6 115 88-216 5-126 (333)
279 PRK03910 D-cysteine desulfhydr 22.4 1.5E+02 0.0033 30.5 5.4 36 180-217 183-218 (331)
280 cd06346 PBP1_ABC_ligand_bindin 22.3 4.1E+02 0.0088 26.5 8.4 66 144-214 158-223 (312)
281 cd06295 PBP1_CelR Ligand bindi 22.2 3.8E+02 0.0082 25.7 7.9 44 170-219 54-97 (275)
282 cd02038 FleN-like FleN is a me 22.0 5.5E+02 0.012 22.6 10.9 69 187-291 8-76 (139)
283 cd06301 PBP1_rhizopine_binding 22.0 2.9E+02 0.0063 26.4 7.0 47 166-216 42-88 (272)
284 PF05036 SPOR: Sporulation rel 21.8 1.6E+02 0.0035 22.5 4.3 45 165-209 14-71 (76)
285 cd02991 UAS_ETEA UAS family, E 21.8 2.1E+02 0.0046 25.0 5.4 67 171-245 44-110 (116)
286 PF07085 DRTGG: DRTGG domain; 21.7 1.5E+02 0.0032 25.1 4.2 42 170-216 51-92 (105)
287 PRK10703 DNA-binding transcrip 21.7 3.3E+02 0.0072 27.4 7.6 88 85-215 58-145 (341)
288 cd01672 TMPK Thymidine monopho 21.7 1.3E+02 0.0027 27.6 4.2 34 184-217 3-38 (200)
289 TIGR01916 F420_cofE F420-0:gam 21.4 3.3E+02 0.0072 27.4 7.2 57 256-324 88-148 (243)
290 cd06311 PBP1_ABC_sugar_binding 21.3 6.8E+02 0.015 23.9 9.5 48 166-217 46-93 (274)
291 TIGR01630 psiM2_ORF9 phage unc 21.2 3.3E+02 0.0071 24.2 6.7 63 155-218 18-81 (142)
292 cd06296 PBP1_CatR_like Ligand- 21.1 4.9E+02 0.011 24.7 8.4 60 167-236 42-101 (270)
293 PRK10481 hypothetical protein; 21.1 7.6E+02 0.016 24.5 9.6 174 17-213 14-210 (224)
294 PF10686 DUF2493: Protein of u 20.8 4.1E+02 0.0088 21.4 6.4 55 158-216 10-64 (71)
295 TIGR02263 benz_CoA_red_C benzo 20.8 1E+03 0.022 25.2 11.9 116 88-215 233-357 (380)
296 KOG1357 Serine palmitoyltransf 20.8 1.5E+02 0.0034 32.5 5.0 42 177-218 419-469 (519)
297 TIGR01501 MthylAspMutase methy 20.8 2.8E+02 0.0062 25.2 6.1 112 88-218 3-119 (134)
298 cd02071 MM_CoA_mut_B12_BD meth 20.7 1.7E+02 0.0037 25.5 4.6 74 133-211 8-83 (122)
299 PRK00025 lpxB lipid-A-disaccha 20.7 2.6E+02 0.0056 28.7 6.7 80 108-194 20-99 (380)
300 cd06309 PBP1_YtfQ_like Peripla 20.6 2.3E+02 0.0051 27.2 6.0 47 166-216 41-87 (273)
301 cd03411 Ferrochelatase_N Ferro 20.5 2.8E+02 0.0061 25.5 6.2 117 89-216 3-120 (159)
302 TIGR00176 mobB molybdopterin-g 20.4 2.3E+02 0.0051 26.0 5.6 48 184-238 2-51 (155)
303 PF13727 CoA_binding_3: CoA-bi 20.3 1.2E+02 0.0026 27.1 3.7 46 169-216 130-175 (175)
304 PF03808 Glyco_tran_WecB: Glyc 20.3 7E+02 0.015 23.1 9.4 27 103-129 59-85 (172)
305 PRK13011 formyltetrahydrofolat 20.1 4.4E+02 0.0095 27.0 8.0 96 83-201 86-185 (286)
No 1
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=6.4e-132 Score=1066.34 Aligned_cols=473 Identities=43% Similarity=0.740 Sum_probs=454.7
Q ss_pred CChhhhhhhcCCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceEEE
Q 011084 11 LSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVG 90 (494)
Q Consensus 11 ~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig 90 (494)
.|+||++|+.|+|+||++|+++ +++.+++.++++ .++++|+++||||||+|.++|++... .......++|||
T Consensus 29 ~s~~q~~r~~~~p~lp~~l~~~-~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~-----~~~~~~~~~~IG 100 (568)
T PLN02251 29 YSEVQSSRIDHALPLPSVLKGP-FKIVDGPPSSAA--GNPEEIAKLFPNLFGQPSVMLVPSQA-----DALSSDQKLKIG 100 (568)
T ss_pred cCHHHHHHHhCCCCCChhhcCc-eEEEecCccccc--CCHHHHHHhChHhhCCceEEEeeccC-----ccccccccceEE
Confidence 8999999999999999999886 999999998877 88999999999999999999998531 112224568999
Q ss_pred EEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHHH
Q 011084 91 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVN 170 (494)
Q Consensus 91 Il~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~ 170 (494)
|||||||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|++++++++++
T Consensus 101 Iv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~ 180 (568)
T PLN02251 101 VVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFK 180 (568)
T ss_pred EECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHH
Q 011084 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCT 250 (494)
Q Consensus 171 ~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~ 250 (494)
+++++|++++||+||+|||||||++|+.|+|||+++|++++||||||||||||+++|+|+|||||||+++++++|+||++
T Consensus 181 ~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~ 260 (568)
T PLN02251 181 QAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMI 260 (568)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCC
Q 011084 251 DALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE 330 (494)
Q Consensus 251 da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl~~ 330 (494)
||.|++|||||||+|||+||||||+||||||||+|||||++++++++|+||++.|++.|++|+.+|++|||||||||+++
T Consensus 261 da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie 340 (568)
T PLN02251 261 DARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLID 340 (568)
T ss_pred HHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhcCCCC--CcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHH
Q 011084 331 SIPEVYALLKEIHSLLRQGVPV--DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMN 408 (494)
Q Consensus 331 ~~~~~~~li~e~~~~~~~~~~~--~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~~l~ 408 (494)
++|+++.||+|++++++++..+ ..+.++||+|++++|++||++||+||+.+||+|||+|+++|+||++|++||+++|+
T Consensus 341 ~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~ 420 (568)
T PLN02251 341 FIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE 420 (568)
T ss_pred hCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHh
Confidence 9999999999999999876543 45788999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHHhHh
Q 011084 409 KRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRF 488 (494)
Q Consensus 409 ~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~~~~ 488 (494)
+|+.+|+|+|+ |++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|+..|+++|.++++||++||
T Consensus 421 ~rk~~~~~~~~-f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~m 499 (568)
T PLN02251 421 KRKQEGSYKGH-FKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLM 499 (568)
T ss_pred hhccccccccc-cceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHh
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011084 489 SFFS 492 (494)
Q Consensus 489 ~~~~ 492 (494)
|+||
T Consensus 500 n~e~ 503 (568)
T PLN02251 500 DVER 503 (568)
T ss_pred hhhh
Confidence 9997
No 2
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.5e-131 Score=1070.72 Aligned_cols=484 Identities=90% Similarity=1.381 Sum_probs=463.9
Q ss_pred CCCChhhhhhhcCCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceE
Q 011084 9 RELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIR 88 (494)
Q Consensus 9 ~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (494)
.++|+||++|+.|+|+||++|++..++++.++.+++.+..++++|+++||||||+|+++|.+.....|+.+..+....+|
T Consensus 2 ~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r 81 (610)
T PLN03028 2 RELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVR 81 (610)
T ss_pred CCCCHHHHHHHhCCCCCChhhCCCcEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccE
Confidence 57999999999999999999998669999999999997667799999999999999999998543346666666667799
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
||||+||||||||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|++++++++
T Consensus 82 IgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~ 161 (610)
T PLN03028 82 VGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQ 161 (610)
T ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHH
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNV 248 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl 248 (494)
+++++++|++++||+||+|||||||++|++|+|||++++++++||||||||||||+++.+|+|||||||+++++++|+||
T Consensus 162 ~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni 241 (610)
T PLN03028 162 VNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNV 241 (610)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877779999999999999999999
Q ss_pred HHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Q 011084 249 CTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 328 (494)
Q Consensus 249 ~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl 328 (494)
++||.|+++||||||+|||+||||||+||||+|||+||||||++.+++||.++++.|++.|++|+++||+|||||||||+
T Consensus 242 ~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGl 321 (610)
T PLN03028 242 CTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGL 321 (610)
T ss_pred HHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHH
Q 011084 329 IESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMN 408 (494)
Q Consensus 329 ~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~~l~ 408 (494)
++++|+++.||+|+++++.++....++.++||||++++|++||.+||+||+.+||+|||+|+++|+||++|++||+++|+
T Consensus 322 ie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL~ 401 (610)
T PLN03028 322 IESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMN 401 (610)
T ss_pred cccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHHH
Confidence 99999999999999999977766667789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHHhHh
Q 011084 409 KRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRF 488 (494)
Q Consensus 409 ~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~~~~ 488 (494)
+|+++|+|++.+|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||++||
T Consensus 402 ~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~m 481 (610)
T PLN03028 402 KRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMM 481 (610)
T ss_pred HHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHHh
Confidence 99999999995599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011084 489 SFFS 492 (494)
Q Consensus 489 ~~~~ 492 (494)
|+||
T Consensus 482 ~~~~ 485 (610)
T PLN03028 482 SVKR 485 (610)
T ss_pred hHHh
Confidence 9987
No 3
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=1.4e-129 Score=1046.20 Aligned_cols=476 Identities=43% Similarity=0.730 Sum_probs=454.6
Q ss_pred CCCChhhhhhhcCCCCCCcCCCCC--ceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCc
Q 011084 9 RELSGLQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA 86 (494)
Q Consensus 9 ~~~s~l~~~r~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (494)
|+.|+||++|+.|+|+||++|++. .+++..++.++++ .|+++|+++||||||+|.++|++... ......+
T Consensus 1 ~~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~fp~~~~~p~~~~~~~~~------~~~~~~~ 72 (550)
T cd00765 1 MVYSLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAA--GDPDALAKLFPGTYGQPSVAFVPDQD------APSSAPK 72 (550)
T ss_pred CCccHHHHHHHhcCCCCChhhcCCccceEEeecCccccc--CCHHHHHHhChhhhCCcceEEeecCC------cccCCCC
Confidence 568999999999999999999884 5899999999988 88899999999999999999998641 1222456
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
+||||++|||||||+||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|++++++
T Consensus 73 ~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~ 152 (550)
T cd00765 73 LKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETE 152 (550)
T ss_pred CEEEEECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCH
Confidence 89999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~ 246 (494)
+++++++++|++++||+||+|||||||++|++|+|||+++|++++||||||||||||+++++|+|||||||+++++++|+
T Consensus 153 e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ 232 (550)
T cd00765 153 DQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIG 232 (550)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 011084 247 NVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326 (494)
Q Consensus 247 nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~E 326 (494)
||++|+.|+++||||||+|||+||||||+||||++||+|||||++++++++|.||+++|++.|++|+.+||+||||||||
T Consensus 233 ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsE 312 (550)
T cd00765 233 NVMRDARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPE 312 (550)
T ss_pred HHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHhhcCCC--CCcccccCChhhhhhhccCh---------hHHHhhhhcCCCCCCCcccchhhh
Q 011084 327 GLIESIPEVYALLKEIHSLLRQGVP--VDNISSQLSPWASALFEFLP---------PFIKKQLLLQPESDDSAQLSQIET 395 (494)
Q Consensus 327 Gl~~~~~~~~~li~e~~~~~~~~~~--~~~~~~~l~~~~~~~f~~lp---------~~i~~~l~~~~D~~G~~~~~~i~t 395 (494)
|+++++|+++.||+|++++++++.. .+.+.++|++|++++|++|| ++|++||+.+||+|||+|+++|+|
T Consensus 313 Glie~ipe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iet 392 (550)
T cd00765 313 GLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIET 392 (550)
T ss_pred CchhhCchHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchH
Confidence 9999999999999999999877644 24578899999999987777 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCc
Q 011084 396 EKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 475 (494)
Q Consensus 396 e~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~ 475 (494)
|++|++||+++|++++.+|+|+|+ |+.++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|+..+++
T Consensus 393 e~lL~~lV~~~L~~~k~~g~y~~~-f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~ 471 (550)
T cd00765 393 EKLLIQMVETRLEKMKQAGAYKGQ-FMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVE 471 (550)
T ss_pred HHHHHHHHHHHHHHhhhccccccc-ccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCce
Confidence 999999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEccccHHhHhccccC
Q 011084 476 KWRCGAAPITVRFSFFSI 493 (494)
Q Consensus 476 ~w~~~~vPl~~~~~~~~~ 493 (494)
+|.++++||++|||+||-
T Consensus 472 ~w~~~~vPl~~~mn~e~~ 489 (550)
T cd00765 472 EWTVGGVPLTMLMNMERR 489 (550)
T ss_pred EEEEecccHHHHhccccc
Confidence 999999999999999984
No 4
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.9e-128 Score=1040.87 Aligned_cols=473 Identities=48% Similarity=0.816 Sum_probs=452.7
Q ss_pred CCCChhhhhhhcCCCCCCcCCCCC--ceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCc
Q 011084 9 RELSGLQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA 86 (494)
Q Consensus 9 ~~~s~l~~~r~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (494)
|++|+||++|+.|+|+||++|++. .++++.++.++++ .++++|+++||||||+|.++|.+... ....+
T Consensus 1 ~~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~--------~~~~~ 70 (555)
T PRK07085 1 MNKSYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESV--ADQDELAELFPNTYGLPYVTFVKGSE--------SSSKP 70 (555)
T ss_pred CCcCHHHHHHHhCCCCCCHHHhCCCCCceEeecCCcccc--CCHHHHHHhChHhhCCccEEEEeCCC--------Ccccc
Confidence 578999999999999999999763 5999999999988 78899999999999999999999751 12346
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
+||||++||||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|++++++
T Consensus 71 ~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~ 150 (555)
T PRK07085 71 LKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETE 150 (555)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCH
Confidence 89999999999999999999999999888899999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~ 246 (494)
+++++++++|++++||+||+||||||+++|+.|+|||++++++++||||||||||||+++.||+|||||||+++++++|+
T Consensus 151 e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~ 230 (555)
T PRK07085 151 EQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIG 230 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 011084 247 NVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326 (494)
Q Consensus 247 nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~E 326 (494)
||++|+.|+++||||||+|||+||||||+||||++||+|||||++++++++|++|+++|++.|++|+.+|++||||||||
T Consensus 231 ~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsE 310 (555)
T PRK07085 231 NISRDALSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPE 310 (555)
T ss_pred HHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHhhcCCC----------CCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhH
Q 011084 327 GLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETE 396 (494)
Q Consensus 327 Gl~~~~~~~~~li~e~~~~~~~~~~----------~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te 396 (494)
|+++++|+++.||+|+|+++++... .+++.++||+|++++|++||.+||+||+.+||+|||+|+++|+||
T Consensus 311 Glie~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te 390 (555)
T PRK07085 311 GLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETE 390 (555)
T ss_pred CchhcCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHH
Confidence 9999999999999999999966421 245788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcc
Q 011084 397 KLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 476 (494)
Q Consensus 397 ~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~ 476 (494)
++|+++|+++|++++.+|+|+++ |++++|+|||+|||+.||+||+.|||+||+.|++++++|+||||++|+|+..|+++
T Consensus 391 ~lL~~lV~~~l~~~k~~g~y~~~-f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~ 469 (555)
T PRK07085 391 KLLIEMVKKELEKLKPEGKYKGP-FSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTE 469 (555)
T ss_pred HHHHHHHHHHHHHhhcccccccc-eeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcce
Confidence 99999999999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccccHHhHhcccc
Q 011084 477 WRCGAAPITVRFSFFS 492 (494)
Q Consensus 477 w~~~~vPl~~~~~~~~ 492 (494)
|.++++||++|||+||
T Consensus 470 w~~~~vPl~~~~n~e~ 485 (555)
T PRK07085 470 WIAGAVPLTMMMNMER 485 (555)
T ss_pred eeEecccHHHHhcHHh
Confidence 9999999999999995
No 5
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=2.1e-127 Score=1031.03 Aligned_cols=470 Identities=55% Similarity=0.905 Sum_probs=449.5
Q ss_pred hhhhhhcCCCCCCcCCCCC--ceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceEEEE
Q 011084 14 LQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGI 91 (494)
Q Consensus 14 l~~~r~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgI 91 (494)
||++|+.|+|+||++|++. .+++..++.+++. .++++|+++||||||+|.++|.++.+ ......++||||
T Consensus 1 ~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~------~~~~~~~~rIgI 72 (539)
T TIGR02477 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAV--ADQEELKELFPNTYGLPIITFEPGEA------SPDEHQPLKIGV 72 (539)
T ss_pred CchhHhhCCCCCChHHcCCCcceEEeccCcccCC--CCHHHHHHhChHhhCCccEEEecCCC------CcccccceEEEE
Confidence 6999999999999999884 4888999988877 88999999999999999999998652 112345689999
Q ss_pred EecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHHHH
Q 011084 92 VFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNA 171 (494)
Q Consensus 92 l~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~ 171 (494)
++||||||||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|.++.+++++++
T Consensus 73 l~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~ 152 (539)
T TIGR02477 73 ILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAK 152 (539)
T ss_pred ECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHH
Q 011084 172 ALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251 (494)
Q Consensus 172 ~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~d 251 (494)
++++|++++||+||+||||||+++|+.|+|||.+++++++||||||||||||++..+|+|||||||+++++++|+||++|
T Consensus 153 ~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~D 232 (539)
T TIGR02477 153 ALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRD 232 (539)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999866779999999999999999999999
Q ss_pred HhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc
Q 011084 252 ALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIES 331 (494)
Q Consensus 252 a~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl~~~ 331 (494)
+.|+++||||||+|||+||||||+||||++||+|||||++++++++|++++++|++.|++|+.+|++|||||||||++++
T Consensus 233 a~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ 312 (539)
T TIGR02477 233 ALSAKKYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEF 312 (539)
T ss_pred HHhcCCcEEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhcCCCC----CcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHH
Q 011084 332 IPEVYALLKEIHSLLRQGVPV----DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEM 407 (494)
Q Consensus 332 ~~~~~~li~e~~~~~~~~~~~----~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~~l 407 (494)
+|+++.||+|+|++++++... +.+.++||+|++++|++||.+||+||+.+||+|||+|+++|+||++|+++|+++|
T Consensus 313 ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l 392 (539)
T TIGR02477 313 IPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTEL 392 (539)
T ss_pred cchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHH
Confidence 999999999999999776554 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHHhH
Q 011084 408 NKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVR 487 (494)
Q Consensus 408 ~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~~~ 487 (494)
++++++|+|+++ |..++|+|||+|||+.||+||+.|||+||+.|+.++++|+||||++|+|+..|+++|.++++||++|
T Consensus 393 ~~~~~~~~~k~~-f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~ 471 (539)
T TIGR02477 393 NKRKKEGEYKGK-FSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMM 471 (539)
T ss_pred HhhhccccceeE-EeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHH
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccc
Q 011084 488 FSFFS 492 (494)
Q Consensus 488 ~~~~~ 492 (494)
||+||
T Consensus 472 ~n~e~ 476 (539)
T TIGR02477 472 MNMER 476 (539)
T ss_pred hChhh
Confidence 99996
No 6
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.3e-121 Score=1036.05 Aligned_cols=481 Identities=36% Similarity=0.623 Sum_probs=451.6
Q ss_pred CCCCCC---CCChhhhhhhcCCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCcccc
Q 011084 4 DFGIPR---ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQI 80 (494)
Q Consensus 4 ~~~~~~---~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~ 80 (494)
.++|.. ..|+||++|+.|+|+||++|++. +++..++.++++...++++|+++||+|||+|+++|+++.. ....
T Consensus 21 ~~~s~~~~~~~s~~q~~r~~~~p~lp~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~---~~~~ 96 (1328)
T PTZ00468 21 LLSASSLHEGQSNMQMWRRRWEPCLPHILRSP-LSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISD---GSSS 96 (1328)
T ss_pred ccchhhhhcCcCHHHHHHHhcCCCCChHhcCc-eEEeecCCcccccCcchHHHHHhCccccCCcceEEeecCC---Cccc
Confidence 444443 46999999999999999999886 9999999999886566699999999999999999998531 0001
Q ss_pred ccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC
Q 011084 81 ITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 81 ~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
......+||||||||||||||||||+|++++++..+++++||||++||.||+++++++|+++.++.|+|+|||++|||+|
T Consensus 97 ~~~~~~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R 176 (1328)
T PTZ00468 97 WKKFPARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGR 176 (1328)
T ss_pred cccccCCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcC
Confidence 11113489999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 161 DQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 161 ~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
.++.+++++++++++|++++||+||+||||||+++|++|+|||++.|++++||||||||||||+++.+|+|||||||+++
T Consensus 177 ~kl~~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~ 256 (1328)
T PTZ00468 177 HKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKT 256 (1328)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999777799999999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeE
Q 011084 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHG 320 (494)
Q Consensus 241 ~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~g 320 (494)
++++|++++.||.|+++||||||+|||+||||||+||||++||+|||||+++++++||.||++.|++.|.+|++.|++||
T Consensus 257 iae~I~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~yg 336 (1328)
T PTZ00468 257 YSEQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHG 336 (1328)
T ss_pred HHHHHHHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcE
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHH
Q 011084 321 VILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLA 400 (494)
Q Consensus 321 vVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~ 400 (494)
|||||||+++++|+++.||+|+|+++++....+.+.++||||++++|++||.+|++||+.+||+|||+|+++|+||++|+
T Consensus 337 IIvVsEGliefIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa 416 (1328)
T PTZ00468 337 IVLLPEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLV 416 (1328)
T ss_pred EEEEcCCccccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHH
Confidence 99999999999999999999999999877666778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEc
Q 011084 401 HLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 480 (494)
Q Consensus 401 ~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~ 480 (494)
++|+++|++++++ |+ . |.+++|+|||+|||+.||+||+.|||+||+.|++++.+|+||||++|+|+..++++|.++
T Consensus 417 ~lV~~~L~~~~~~--~~-~-f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~ 492 (1328)
T PTZ00468 417 HMAKEKLEEVKKD--YI-L-DNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPA 492 (1328)
T ss_pred HHHHHHHHHhhcc--cc-c-CCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEc
Confidence 9999999999764 54 3 889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhHhcccc
Q 011084 481 AAPITVRFSFFS 492 (494)
Q Consensus 481 ~vPl~~~~~~~~ 492 (494)
++||++|||+|+
T Consensus 493 ~vPL~~mmn~E~ 504 (1328)
T PTZ00468 493 GCPLTYMMNIEL 504 (1328)
T ss_pred cccHHHHhhHHh
Confidence 999999999987
No 7
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.3e-117 Score=1007.69 Aligned_cols=479 Identities=38% Similarity=0.625 Sum_probs=433.5
Q ss_pred CCCCCCCChhhhhhhcCCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCC
Q 011084 5 FGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEH 84 (494)
Q Consensus 5 ~~~~~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (494)
|.+..++|++|..|..|+|+||.++.+...+++......+.++..+.++...|||+....-.. .... ..+....+.+
T Consensus 758 ~~~~~~~s~~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~--~~~~~~~~~~ 834 (1419)
T PTZ00287 758 YKSLGCMSELQTSRLYNKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYENKFQ-IQEI--FHDKYATPIS 834 (1419)
T ss_pred hhhhccccHHhhhccccCccchhhhhhhHhhcccceeeecCChhhhhhhhhcccchhhhhhhh-Hhhh--hccccccCCc
Confidence 356778999999999999999999876545565554444445566789999999986543331 2211 1233233445
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC-CCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQI 163 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R-~k~ 163 (494)
..+||||||||||||||||||+|++++++..+ +. ++||. ||.||+++++++||.+.|+.|+|+|||+++||+| .++
T Consensus 835 ~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~-g~-~~gf~-G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f 911 (1419)
T PTZ00287 835 FEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLK-GV-CIAFY-GLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSL 911 (1419)
T ss_pred CCcEEEEECcCCCcHhHHHHHHHHHHHHHHhC-Ce-EEEEe-CchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCC
Confidence 67999999999999999999999999987553 43 67766 9999999999999999999999999997779999 568
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHH
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~ 243 (494)
.++|++++++++|++++||+||+||||||+++|+.|+|||+++|++++||||||||||||++..+|+|||||||++++++
T Consensus 912 ~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~se 991 (1419)
T PTZ00287 912 FDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYAS 991 (1419)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999666699999999999999
Q ss_pred HHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEE
Q 011084 244 LISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVIL 323 (494)
Q Consensus 244 ~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVl 323 (494)
+|+||++||.|++|||||||||||+||||||+||||||||+|||||++..+++||.+|+++|++.|++|++.||+|||||
T Consensus 992 aI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIVl 1071 (1419)
T PTZ00287 992 LIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVL 1071 (1419)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcchhHHHHHHHHHHHhhc-----------C----------C------------C----CCcccccCChhhhhh
Q 011084 324 LPEGLIESIPEVYALLKEIHSLLRQ-----------G----------V------------P----VDNISSQLSPWASAL 366 (494)
Q Consensus 324 v~EGl~~~~~~~~~li~e~~~~~~~-----------~----------~------------~----~~~~~~~l~~~~~~~ 366 (494)
|||||++++|+++.||+|+++++++ . . . .+++.++||||+++|
T Consensus 1072 V~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~l 1151 (1419)
T PTZ00287 1072 IPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLAL 1151 (1419)
T ss_pred EcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHHH
Confidence 9999999999999999999999854 1 0 0 134678999999999
Q ss_pred hccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHH
Q 011084 367 FEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAY 446 (494)
Q Consensus 367 f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~ 446 (494)
|++||.+||+||+ +||+ ||+|+|+|+||++|++||+++|++|+++|+|+|+ |++++|||||++||+.||+|||+|||
T Consensus 1152 f~slP~~i~~qLl-~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~-F~~~~HffGYegR~~~PS~FD~~y~Y 1228 (1419)
T PTZ00287 1152 LKTFPQFIIKELL-HVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGS-FMGLTHFFGYQGRSSLPSEFDCKLAY 1228 (1419)
T ss_pred HHhccHHHHHHHh-ccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccc-cceeeeccccccccCCCCccchHHHH
Confidence 9999999999998 9999 9999999999999999999999999999999997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHHhHhcccc
Q 011084 447 VLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFS 492 (494)
Q Consensus 447 ~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~~~~~~~~ 492 (494)
.||+.|+.++.+|.||||++|+|++.|+++|.++|+||++||++|+
T Consensus 1229 ~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ve~ 1274 (1419)
T PTZ00287 1229 SYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILP 1274 (1419)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhchhh
Confidence 9999999999999999999999999999999999999999999986
No 8
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2e-115 Score=991.83 Aligned_cols=474 Identities=36% Similarity=0.648 Sum_probs=442.4
Q ss_pred CCCCCC---CCChhhhhhhcCCCCCCcCCCCCcee---eecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCc
Q 011084 4 DFGIPR---ELSGLQQLRSLYQPELPPCLQGTTVR---VEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPD 77 (494)
Q Consensus 4 ~~~~~~---~~s~l~~~r~~~~p~lp~~l~~~~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~ 77 (494)
.++|+. +.|+||++|+.|+|+||++|++. ++ +..|+.+.+. .|.+++.++||++++.|.++|.+...
T Consensus 96 ~~~~~~l~~~~s~~q~~r~~~~p~lp~~l~~~-~~~~~~~~g~~~~~~--~d~~~~~~f~~~~~~~~~~~~~~~~~---- 168 (1419)
T PTZ00287 96 HGHSASLNDDLSPLQYERIKYQPTLPKALASE-YQILEENHGDDFINK--KDYEEVKRFLKNLHNLPILNVKETNN---- 168 (1419)
T ss_pred cccchhhhcccCHHHHHHHhcCCCCchhhccc-cccceeccCcccccc--cCHHHHHHHHHHhhcCceeeecCCCc----
Confidence 344443 57999999999999999999885 77 7888887766 88899999999999999999986431
Q ss_pred cccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCccccc
Q 011084 78 AQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG 157 (494)
Q Consensus 78 ~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lg 157 (494)
........++||||++||||||||||||+|+++++++.+++++||||++||+||+++++++|+++.++.|+++|||++||
T Consensus 169 ~~~~~~~~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLG 248 (1419)
T PTZ00287 169 HESFKGGNVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLW 248 (1419)
T ss_pred cccccccCceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhh
Confidence 11122234589999999999999999999999999877889999999999999999999999999999999999998999
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhH
Q 011084 158 RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (494)
Q Consensus 158 S~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA 237 (494)
|+|.++.+++++++++++|++++||+||+||||||+++|++|++|+.+.+++++||||||||||||+++.+|+|||||||
T Consensus 249 SgR~k~~~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA 328 (1419)
T PTZ00287 249 SGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTA 328 (1419)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999997666699999999
Q ss_pred HHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCC
Q 011084 238 CKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDK 317 (494)
Q Consensus 238 ~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk 317 (494)
+++++++|++++.|+.|++++|||||+|||+|||||++||||++||+|||||++++++++|++|++.|++.|.+|+..|+
T Consensus 329 ~n~iae~I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtgAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk 408 (1419)
T PTZ00287 329 TKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNK 408 (1419)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhcCCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHH
Q 011084 318 NHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 397 (494)
Q Consensus 318 ~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~ 397 (494)
+|||||||||+++++|+++.||+|+|++++++.. ..++++ |++++|++||.++++||+++||+|||+|+++|+||+
T Consensus 409 ~~gVIvVsEGlie~Ipe~~~Li~eln~~l~~g~~---~~~~~~-~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~ 484 (1419)
T PTZ00287 409 NYGVILIPEGLIEFVPEMKILIGELNVILKEGPF---DASKLK-HSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATER 484 (1419)
T ss_pred CcEEEEEeCCcchhcchHHHHHHHhhhhcccCcc---hhhhhh-hhhhhhhhccHHHHhhhhcccCCCCCEeccccchHH
Confidence 9999999999999999999999999999987743 245566 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcce
Q 011084 398 LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKW 477 (494)
Q Consensus 398 ~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w 477 (494)
+|+++|+++|++++++|. +|++++|+|||+|||+.||+||++|||+||+.|++++.+|+||||++|+|+..++++|
T Consensus 485 lL~~~V~~~L~~~~~~g~----~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w 560 (1419)
T PTZ00287 485 LIIVLVESELAKLNDNNL----NIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANW 560 (1419)
T ss_pred HHHHHHHHHHHHHHhcCC----CeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCccee
Confidence 999999999999987763 3999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccHHhHhcccc
Q 011084 478 RCGAAPITVRFSFFS 492 (494)
Q Consensus 478 ~~~~vPl~~~~~~~~ 492 (494)
+++++||++||+|||
T Consensus 561 ~~~~vPl~~~m~~e~ 575 (1419)
T PTZ00287 561 IPAAIPFLRIMHVNR 575 (1419)
T ss_pred EEcccCHHHHhhHHh
Confidence 999999999999997
No 9
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=3.4e-104 Score=894.68 Aligned_cols=474 Identities=27% Similarity=0.427 Sum_probs=410.8
Q ss_pred CCCCCCChhhhhhhcCCCCCCcCCCCCceeeecCCCcccCCC---CChHHHhhhCCCccCCCc---eeEecCc-cC----
Q 011084 6 GIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADP---ADTHSISRSFPHTYGQPL---AHFLRAT-AK---- 74 (494)
Q Consensus 6 ~~~~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~---~~~~~i~~~fp~~~~~~~---~~~~~~~-~~---- 74 (494)
.++.++|+||..|.+|+|++|..|.....+ ......+.|+ ....+|.+.||+...+.. +.+.... .+
T Consensus 581 ~~~~~~s~l~~~r~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1328)
T PTZ00468 581 THKLCGSELSQNRCKDDLKIPKILLSTASK--FNDDLIISSSCRDLDAYIITKCLPHQTGRHNSKTLQLREEEYSSPFTE 658 (1328)
T ss_pred hcccccchhhhhhhcCCCCCchhhhhhhcc--cchhhcccCchHHHHHHHHHhhCcHhhhcccCcceEEEeccccCchhh
Confidence 566789999999999999999999765444 3333344443 556788999999876632 3333221 00
Q ss_pred CCccccc---cC--CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCee--ecC----HhH
Q 011084 75 VPDAQII---TE--HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTL--EVT----KEI 143 (494)
Q Consensus 75 ~~~~~~~---~~--~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~i--eLt----~~~ 143 (494)
.++.+.. .. ...++||||+.||||||+||||+|++.++. +.+ |+||++||.||+++++. .|| .+.
T Consensus 659 i~~~~~~~~~~~~~~~~~~vgIv~~g~~aPG~NnVI~g~~~~~~--~~g--vig~~~G~~~L~~~~~~~v~l~~~~~~~~ 734 (1328)
T PTZ00468 659 IRESSSSKSSVGNSLACESLGLILSCLSTPGTQNVICGLVNGLP--SLK--QLIVFKSLSDFYEGKALKVDLTSEGSLEF 734 (1328)
T ss_pred ccccccCcccccccccceeEEEEecCCCCccHHHHHHHHHHHHH--hCC--cEEEEechhHHhcCCceEEecccchhHHH
Confidence 0111111 11 134899999999999999999999999886 323 99999999999999754 455 468
Q ss_pred HhcccccCCccccccc----------CCCCCC-----hH---------------HHHHHHHHHHHcCCCEEEEecCcchH
Q 011084 144 LSTYKNQGGYDMLGRT----------KDQIRT-----TE---------------QVNAALTACKNLNLDGLVIIGGVTSN 193 (494)
Q Consensus 144 v~~~~n~GG~~~lgS~----------R~k~~~-----~e---------------~~~~~~~~l~~~~Id~LviIGGd~S~ 193 (494)
++.++|+||+ ++..+ |..+.+ ++ +.+.+.++|++++||+||+||||||+
T Consensus 735 ~~~~~n~GG~-~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~ 813 (1328)
T PTZ00468 735 FENSLNSGGC-IFPNGVEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAA 813 (1328)
T ss_pred HHHHHhcCCe-eeeccccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 9999999998 66666 543322 23 56889999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-----CCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCC
Q 011084 194 TDAAYLAETFAEAK-----CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRR 268 (494)
Q Consensus 194 ~~A~~Lae~~~~~~-----~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ 268 (494)
++|+.|+|+|.+++ .+++||||||||||||+++++|+|||||||+++++++|+|+.+|++|+++||||||+|||+
T Consensus 814 t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ 893 (1328)
T PTZ00468 814 TFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDK 893 (1328)
T ss_pred HHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 99999999998765 5799999999999999998888999999999999999999999999999999999999999
Q ss_pred ccHHHHHhhhhcCCcEEEeCCcchhh----------cccHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcch---hH
Q 011084 269 ASHVALECTLQSHPNMVILGEEVAAS----------KLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIP---EV 335 (494)
Q Consensus 269 ag~lAl~~aLat~p~~ilIpEe~~~~----------~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~---~~ 335 (494)
||||||+||||||||+|+|||++.++ +++|++|+++|++.|++|++.||+|||||||||+++++| |+
T Consensus 894 ag~LAL~~gLatganivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~ 973 (1328)
T PTZ00468 894 TSNVALEVGIQTHPNLVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREY 973 (1328)
T ss_pred hHHHHHHHHHhhCCCEEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHH
Confidence 99999999999999999999998643 589999999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHhhcCCC--------CCcccccCChhhhhh---hccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHH
Q 011084 336 YALLKEIHSLLRQGVP--------VDNISSQLSPWASAL---FEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVE 404 (494)
Q Consensus 336 ~~li~e~~~~~~~~~~--------~~~~~~~l~~~~~~~---f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~ 404 (494)
+.||.|+ ++.... .+++.++||||++++ |++||.+|++||+++|| ||+|+|+||||++|++||+
T Consensus 974 ~~li~e~---~a~~~~~~~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~d--gn~~vs~IeTE~lL~~lV~ 1048 (1328)
T PTZ00468 974 RKIFSRF---STQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLI--NSRKICDVRTEIILSALVQ 1048 (1328)
T ss_pred HHHHHHH---hhhccccccchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccC--CCcchhhhhHHHHHHHHHH
Confidence 9999983 322221 135788999999999 99999999999999999 9999999999999999999
Q ss_pred HHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-CceEEEEecCCCCCcceEEcccc
Q 011084 405 VEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL-NGYMATVTNLKNPANKWRCGAAP 483 (494)
Q Consensus 405 ~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~-tG~mv~i~~~~~~~~~w~~~~vP 483 (494)
++|++|+++|+|+|+ |++++|||||++||+.||+|||+|||+||+.|..++.+|. ||||++|+|++.|+++|.++|+|
T Consensus 1049 ~el~~rk~~g~y~g~-f~~~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iP 1127 (1328)
T PTZ00468 1049 KELKFRRSKNKIKNG-MNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIP 1127 (1328)
T ss_pred HHHHHHHhcCccccc-cceeeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccc
Confidence 999999999999997 9999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHhHhcccc
Q 011084 484 ITVRFSFFS 492 (494)
Q Consensus 484 l~~~~~~~~ 492 (494)
|++||++|+
T Consensus 1128 lt~mm~~~~ 1136 (1328)
T PTZ00468 1128 ISSLMTLNI 1136 (1328)
T ss_pred hHHhhCccc
Confidence 999999985
No 10
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=2.7e-85 Score=674.36 Aligned_cols=322 Identities=30% Similarity=0.455 Sum_probs=297.2
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC-CC
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI-RT 165 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~-~~ 165 (494)
+||||++||||||||||+|+|+++++.. .+++||||++||+||+++++++|+++.++.|+++||| +|||+|+++ ++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT-IIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe-ecccCCCCccCC
Confidence 5899999999999999999999999864 3689999999999999999999999999999999999 999999876 67
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I 245 (494)
++++++++++|++++||+||+||||||+++|.+|+|+|++++.+++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td--~s~Gf~TA~~~~~~~i 155 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTD--YTIGFDTALKTIVEAI 155 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcc--cCcCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999888 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 011084 246 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 325 (494)
Q Consensus 246 ~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~ 325 (494)
++++.||.|+ +||||||+|||+|||||++||||++||+|||||+++. .+.++.+++.|++|++++++|++||||
T Consensus 156 ~~l~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~~ad~iliPE~~~~-----~~~~~~~~~~i~~r~~~~~~~~vivvs 229 (338)
T cd00363 156 DRIRDTASSH-QRTFVVEVMGRHCGDIALEAGLATGADIIFIPEEPAA-----DEWEEEMVDVIKKRRERGKRHGIVIVA 229 (338)
T ss_pred HHHHHhcccC-CCEEEEEECCcCHHHHHHHHHHHhCCCEEEeCCCCCC-----CCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 9999999995 5799999999999999999999999999999999853 233688899999999999999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 011084 326 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 405 (494)
Q Consensus 326 EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~ 405 (494)
||+.+++|. ..++++|+++|++
T Consensus 230 EG~~~~~~~----------------------------------------------------------~~~~~~l~~~i~~ 251 (338)
T cd00363 230 EGAIDFIPK----------------------------------------------------------PITEKLLAKLVEE 251 (338)
T ss_pred CCCcccccc----------------------------------------------------------CchHHHHHHHHHH
Confidence 999865431 1144567777766
Q ss_pred HHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHH
Q 011084 406 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 485 (494)
Q Consensus 406 ~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~ 485 (494)
++ + +++|.++|||+|||+.||+|||.||++||..|++++++|+||+|++++|++ +|.+..+||.
T Consensus 252 ~~------~------~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv~~~~~~----~~~~~~vpl~ 315 (338)
T cd00363 252 RL------G------FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLN----ENQVVRHPLT 315 (338)
T ss_pred Hc------C------CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEEEEECCc----cCEEEEecHH
Confidence 54 1 889999999999999999999999999999999999999999999999985 9999999999
Q ss_pred hHhccccC
Q 011084 486 VRFSFFSI 493 (494)
Q Consensus 486 ~~~~~~~~ 493 (494)
++++.+|.
T Consensus 316 ~~~~~~~~ 323 (338)
T cd00363 316 EAVNMTKR 323 (338)
T ss_pred HHHhhhcc
Confidence 99999986
No 11
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.2e-84 Score=684.58 Aligned_cols=343 Identities=19% Similarity=0.279 Sum_probs=304.0
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhc---ccccCCcccccccCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST---YKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~---~~n~GG~~~lgS~R~k 162 (494)
++||||+||||||||||++|+|+++.+....+.++||||++||+||+++++++|+...++. +.++||| +|||+|.+
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt-~LgssR~~ 81 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSG-ALGSCRYK 81 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCe-EeccCCCC
Confidence 4799999999999999999999999987655559999999999999999999999866555 8999999 99999988
Q ss_pred C----CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH
Q 011084 163 I----RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (494)
Q Consensus 163 ~----~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~ 238 (494)
+ .+++++++++++|++++||+||+||||||+++|++|+|++++.|++++||||||||||||.+|| +|||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD--~t~GF~TA~ 159 (416)
T PRK14072 82 LKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTD--HCPGFGSAA 159 (416)
T ss_pred CcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCC--CCCChHHHH
Confidence 6 3688999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHhhccC--ceEEEEecCCCccHHHHHhhhh-----cCCcEEEeCCcchhhcccHHHHHHHHHHHHHH
Q 011084 239 KVNSQLISNVCTDALSAEK--YYYFIRLMGRRASHVALECTLQ-----SHPNMVILGEEVAASKLTLFDLTKQICDAVQA 311 (494)
Q Consensus 239 ~~~~~~I~nl~~da~S~~k--~~~~VevMGR~ag~lAl~~aLa-----t~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~ 311 (494)
++++++|++|+.|+.|+.+ ||||||||||+|||||+++||| ++||+|||||.+++ .+.+++.|++
T Consensus 160 ~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE~~~~--------~~~~~~~i~~ 231 (416)
T PRK14072 160 KYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERPFD--------EEKFLADVRA 231 (416)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCCCccEEEccCCCCC--------HHHHHHHHHH
Confidence 9999999999888876543 6999999999999999999999 99999999999853 3445666777
Q ss_pred HHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccc
Q 011084 312 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLS 391 (494)
Q Consensus 312 R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~ 391 (494)
+++. ++|+|||||||+.+...+ .+. +. ...+|+|||++++
T Consensus 232 ~~~~-~~~~ivvVaEG~~~~~g~---~i~-----------------------------------e~-~~~~D~~gh~~l~ 271 (416)
T PRK14072 232 IVKR-YGYCVVVVSEGIRDADGK---FIA-----------------------------------EA-GLAEDAFGHAQLG 271 (416)
T ss_pred HHHh-CCCeEEEEecCccccccc---chh-----------------------------------cc-ccccCCCCCcccc
Confidence 7755 899999999999753221 110 00 1235999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Q 011084 392 QIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSL--PSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 469 (494)
Q Consensus 392 ~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~--PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~ 469 (494)
+ ++++|+++|++++. +++|+++|||+||||. ||+|||.||++||..|++++.+|++|+|++++|
T Consensus 272 g--~~~~La~~i~~~~g------------~~~R~~~LG~~QRgg~~~ps~~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~~ 337 (416)
T PRK14072 272 G--VAPVLANLIKEKLG------------KKVHWAVLDYLQRAARHIASKTDVEEAYAVGKAAVEYALAGKNGVMPAIRR 337 (416)
T ss_pred c--HHHHHHHHHHHHhC------------CeEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCceEEEEc
Confidence 8 56778877766542 7899999999999998 999999999999999999999999999999999
Q ss_pred CCCCCcceEEccccHHhHhccccC
Q 011084 470 LKNPANKWRCGAAPITVRFSFFSI 493 (494)
Q Consensus 470 ~~~~~~~w~~~~vPl~~~~~~~~~ 493 (494)
...++|+|++..+||.++++.+|-
T Consensus 338 ~~~~~y~~~~~~vpl~~v~~~~k~ 361 (416)
T PRK14072 338 TSDDPYKWKIGLVPLSKVANKEKK 361 (416)
T ss_pred CCCCcceeEEEcccHHHHHhhcCc
Confidence 999999999999999999987664
No 12
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=2.1e-82 Score=670.43 Aligned_cols=358 Identities=22% Similarity=0.319 Sum_probs=316.2
Q ss_pred ceeEecCccCCCccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHH
Q 011084 65 LAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEIL 144 (494)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v 144 (494)
...|+++. ||...++.+...|||||||||+|||||+||+++++.+...+...+||||++||+||+++++++||++.+
T Consensus 69 ~~~~~~ag---pr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V 145 (484)
T PLN02564 69 GTHFRRAG---PRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVV 145 (484)
T ss_pred CccceecC---CcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHh
Confidence 36888887 999999999999999999999999999999999998865555579999999999999999999999999
Q ss_pred hcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 145 STYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 145 ~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+.|+++||| +|||+|.+. ++++++++|++++||+||+||||||+++|+.|+++++++|++++||||||||||||+
T Consensus 146 ~~i~~~GGT-iLGTsR~~~----~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 146 NDIHKRGGT-ILGTSRGGH----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIP 220 (484)
T ss_pred hcHhhCCCc-eeccCCCcc----hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Confidence 999999998 999999864 588999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhc-CCcEEEeCCcchhhcccHHHHHH
Q 011084 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQS-HPNMVILGEEVAASKLTLFDLTK 303 (494)
Q Consensus 225 ~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat-~p~~ilIpEe~~~~~~tL~~i~~ 303 (494)
++| +|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||+ +||+|||||.++ +|++ ..
T Consensus 221 ~tD--~T~GFdTAv~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf----~le~-~~ 293 (484)
T PLN02564 221 VID--KSFGFDTAVEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPF----YLEG-KG 293 (484)
T ss_pred Ccc--cCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCC----Ccch-HH
Confidence 988 999999999999999999999999998889999999999999999999999 699999999985 4443 23
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCC
Q 011084 304 QICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPE 383 (494)
Q Consensus 304 ~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D 383 (494)
.+++.|++|+++ ++|+|||||||+...+ +.+ ..+. ...+|
T Consensus 294 ~ll~~i~~rl~~-~~~~VIVVAEGagq~~------~~~-------------------------------~~~~--~~~~D 333 (484)
T PLN02564 294 GLFEFIEKRLKE-NGHMVIVVAEGAGQDL------IAE-------------------------------SMES--SDLQD 333 (484)
T ss_pred HHHHHHHHHHhc-cCCEEEEEeCCCccch------hhh-------------------------------hhcc--ccccc
Confidence 557778888876 7999999999995321 110 0000 12479
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCce
Q 011084 384 SDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGY 463 (494)
Q Consensus 384 ~~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~ 463 (494)
++||+++.++ .++|++.|++++.++++.+ +++|+..|||+|||+.|+++|+.||+.||+.||+++++|+||+
T Consensus 334 a~Gn~~l~di--g~~La~~I~~~~~~~~~~~------~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg~ 405 (484)
T PLN02564 334 ASGNKLLLDV--GLWLSQKIKDHFTKVKKMP------INLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGF 405 (484)
T ss_pred ccCCcccCcH--HHHHHHHHHHHhhhcccCC------ceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 9999999985 5788888888775443222 8999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcceEEccccHHhHhcccc
Q 011084 464 MATVTNLKNPANKWRCGAAPITVRFSFFS 492 (494)
Q Consensus 464 mv~i~~~~~~~~~w~~~~vPl~~~~~~~~ 492 (494)
|++++|.+ +.-+||.++...-|
T Consensus 406 mVg~~~~~-------~~~vPi~~~~~~~~ 427 (484)
T PLN02564 406 TVGPVNGR-------HAYIPFYRITEKQN 427 (484)
T ss_pred EEEEECCE-------EEEEEHHHHhccCC
Confidence 99999875 67788888876443
No 13
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-82 Score=650.51 Aligned_cols=320 Identities=29% Similarity=0.440 Sum_probs=280.9
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC-CCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIR 164 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R-~k~~ 164 (494)
++||||+|||||||||||||++++++++.. +++||||++||+||+++++++|+++.++.|+|+||| +|||+| .+++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT-~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT-FLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc--CCEEEEEecchhhhcCCcceeccccchhHHHhcCCe-EEeeCCCCCcc
Confidence 579999999999999999999999998744 999999999999999999999999999999999999 888888 4688
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~ 244 (494)
++|.+++++++|++++||+||+||||||+++|+.|+|++ +++|||||||||||++.+| +|||||||+++++++
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td--~tiGfdTA~~~~~ea 151 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTD--FTIGFDTALETAVEA 151 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccc--cCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 3899999999999999888 999999999999999
Q ss_pred HHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHH-HHHcCCCeEEEE
Q 011084 245 ISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA-RAEQDKNHGVIL 323 (494)
Q Consensus 245 I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~-R~~~gk~~gvVl 323 (494)
|++|+ |++|+++||||||||||+||||||+||||++||+|+|||++++. ++ ++++..+++ |...||+|++|+
T Consensus 152 id~l~-dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~~--~i----~~~~~~i~~~~~~~gk~~~iIv 224 (347)
T COG0205 152 IDNLR-DTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIPEEPADL--II----EELIAEIKAKREARGKKHAIIV 224 (347)
T ss_pred HHHHH-HHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEecCccccc--hH----HHHHHHHHHHHHHhCCCceEEE
Confidence 99998 66677778999999999999999999999999999999998643 32 333444444 555899999999
Q ss_pred EeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHH
Q 011084 324 LPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLV 403 (494)
Q Consensus 324 v~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv 403 (494)
|+||+.+++|+ +|+... ..+
T Consensus 225 vaEG~~~~~~~--------------------------------------------------~~~~~~----------~~i 244 (347)
T COG0205 225 VAEGAIDQIGE--------------------------------------------------NGAELL----------AAI 244 (347)
T ss_pred Ecccccccccc--------------------------------------------------chhhHH----------HHH
Confidence 99999987653 111111 112
Q ss_pred HHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEcccc
Q 011084 404 EVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAP 483 (494)
Q Consensus 404 ~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vP 483 (494)
++.+... . +++|.++|||+||||.||+|||.||++||..||+++++|++|+|++++|++-....|.....|
T Consensus 245 ~~~~~~~--------~-~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~~~~ 315 (347)
T COG0205 245 EELLALG--------D-FETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAP 315 (347)
T ss_pred HHHhhhc--------c-cceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCeeEeehhHhhhhh
Confidence 2222211 1 689999999999999999999999999999999999999999999999999888889988888
Q ss_pred HHhHhccc
Q 011084 484 ITVRFSFF 491 (494)
Q Consensus 484 l~~~~~~~ 491 (494)
...+++++
T Consensus 316 ~~~~~~~~ 323 (347)
T COG0205 316 LKMVMSLE 323 (347)
T ss_pred hhhhhccc
Confidence 88877655
No 14
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=3.5e-81 Score=662.06 Aligned_cols=346 Identities=22% Similarity=0.305 Sum_probs=311.7
Q ss_pred eeEecCccCCCccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHh
Q 011084 66 AHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILS 145 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~ 145 (494)
..|++++ ||.+.++.+..+|||||||||+|||||+||+++++++...+...+||||++||+||+++++++||++.++
T Consensus 70 ~~~~~ag---pr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~ 146 (459)
T PTZ00286 70 KRWLRAG---PRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVK 146 (459)
T ss_pred chheecC---CceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhh
Confidence 6788887 9999999999999999999999999999999999998755566899999999999999999999999999
Q ss_pred cccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCC
Q 011084 146 TYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN 225 (494)
Q Consensus 146 ~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~ 225 (494)
.|+++||| +|||+|.++ ++++++++|++++||+||+||||||+++|..|+|+++++|++|+||||||||||||++
T Consensus 147 ~i~~~GGT-iLGTSR~~~----~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~ 221 (459)
T PTZ00286 147 TIHRLGGT-ILGSSRGGF----DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPI 221 (459)
T ss_pred hHHhCCCc-eeccCCChh----hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCC
Confidence 99999998 999999863 6899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcEEEeCCcchhhcccHHHHHHH
Q 011084 226 QFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNMVILGEEVAASKLTLFDLTKQ 304 (494)
Q Consensus 226 ~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~-p~~ilIpEe~~~~~~tL~~i~~~ 304 (494)
+| +|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||.++ +|+ .
T Consensus 222 td--~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f----~l~----~ 291 (459)
T PTZ00286 222 ID--ESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDI----PLE----G 291 (459)
T ss_pred cc--cCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCC----CHH----H
Confidence 88 9999999999999999999999999998899999999999999999999996 99999999974 554 5
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCC
Q 011084 305 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 384 (494)
Q Consensus 305 i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~ 384 (494)
+++.|++|++ +++|+|||||||+.+.+.+ . ++...+|+
T Consensus 292 ll~~l~~r~~-~~~~~VIVVaEGa~~~~~~---------------------------~--------------~~~~~~D~ 329 (459)
T PTZ00286 292 VLEYIEQRLQ-KKGHCVIVVAEGAGQSLKD---------------------------A--------------DLDLGTDA 329 (459)
T ss_pred HHHHHHHHHh-cCCcEEEEEecCCcccccc---------------------------c--------------cccccccc
Confidence 5777788885 4899999999999753221 0 00134799
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceE
Q 011084 385 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYM 464 (494)
Q Consensus 385 ~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~m 464 (494)
+||+++.+ .+++|++.|++.++++.. . +++|+..+||+|||+.||++|+.||+.||+.|++++++|+||+|
T Consensus 330 ~Gn~~l~d--ig~~L~~~I~~~~~~~~~------~-~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~ 400 (459)
T PTZ00286 330 SGNKKLWD--IGVYLKDEITKYLKKKKP------E-HTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFI 400 (459)
T ss_pred cCCccccc--HHHHHHHHHHHHHhhccC------c-eEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Confidence 99999987 458888888888765421 1 89999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcceEEccccHHhH
Q 011084 465 ATVTNLKNPANKWRCGAAPITVR 487 (494)
Q Consensus 465 v~i~~~~~~~~~w~~~~vPl~~~ 487 (494)
+++++. ++..+||..+
T Consensus 401 Vg~~~~-------~~~~vPl~~v 416 (459)
T PTZ00286 401 IGHVHN-------NYVMIPIKEM 416 (459)
T ss_pred EEEECC-------EEEEEeHHHH
Confidence 999987 3677899885
No 15
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=4.9e-81 Score=653.67 Aligned_cols=344 Identities=20% Similarity=0.301 Sum_probs=304.3
Q ss_pred CccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCC-EEEEEccchhhhhcCC--eeecCHhHHhcccccCC
Q 011084 76 PDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKS-TLLGFLGGSEGLFAQK--TLEVTKEILSTYKNQGG 152 (494)
Q Consensus 76 ~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~-~v~Gf~~G~~GL~~~~--~ieLt~~~v~~~~n~GG 152 (494)
||+.+++++..+|||||||||||||||+||+++++.+.. .+. +||||++||+||++++ .++|+++.++.+.++||
T Consensus 43 pr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~--~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GG 120 (411)
T PLN02884 43 PRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI--YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGG 120 (411)
T ss_pred CceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH--cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCC
Confidence 899999999999999999999999999999999998743 356 8999999999999999 67788999999999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc
Q 011084 153 YDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 232 (494)
Q Consensus 153 ~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~ 232 (494)
+ +|||+|.++ .+++++++|++++||+||+||||||+++|.+|++++++.|.+++||||||||||||++|| +||
T Consensus 121 t-~LGtsR~~~----~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD--~Ti 193 (411)
T PLN02884 121 S-LLGVSRGGA----KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMD--KTF 193 (411)
T ss_pred c-eeccCCCCc----cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcc--cCC
Confidence 8 999999887 388999999999999999999999999999999999999989999999999999999998 999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcEEEeCCcchhhcccHHHHHHHHHHHHHH
Q 011084 233 GFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNMVILGEEVAASKLTLFDLTKQICDAVQA 311 (494)
Q Consensus 233 GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~-p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~ 311 (494)
|||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||.+++ ++. .+.+++.|++
T Consensus 194 GFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~----~~~-~~~~~~~i~~ 268 (411)
T PLN02884 194 GFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFT----LDG-PNGVLRHLEH 268 (411)
T ss_pred CHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCC----ccc-HHHHHHHHHH
Confidence 9999999999999999999988666799999999999999999999998 999999999853 211 2456777888
Q ss_pred HHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccc
Q 011084 312 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLS 391 (494)
Q Consensus 312 R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~ 391 (494)
|++ +++|+||+|+||+...+.+ . ...+|+|||++++
T Consensus 269 ~~~-~k~~~iIVVAEG~g~~~~~---------------------------~----------------~~~~Da~G~~~l~ 304 (411)
T PLN02884 269 LIE-TKGSAVVCVAEGAGQDLLQ---------------------------K----------------TNATDASGNPVLG 304 (411)
T ss_pred HHh-cCCcEEEEEeccccccccc---------------------------c----------------cccccccCCcccC
Confidence 776 8999999999999533211 0 0247999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCC
Q 011084 392 QIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLK 471 (494)
Q Consensus 392 ~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~ 471 (494)
++ .+.|+++|++++++. | ..+++|+..|||+||||.|+++|+.||+.||..|++++++|++|+|++++|.
T Consensus 305 ~~--~~~La~~i~~~~~~~---g----~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~- 374 (411)
T PLN02884 305 DI--GVHLQQEIKKHFKDI---G----VPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNT- 374 (411)
T ss_pred cH--HHHHHHHHHHHhhcc---C----CCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-
Confidence 85 456777776665542 1 1179999999999999999999999999999999999999999999999985
Q ss_pred CCCcceEEccccHHhHhccccC
Q 011084 472 NPANKWRCGAAPITVRFSFFSI 493 (494)
Q Consensus 472 ~~~~~w~~~~vPl~~~~~~~~~ 493 (494)
++..+||.++++.+|-
T Consensus 375 ------~~~~vpl~~v~~~~k~ 390 (411)
T PLN02884 375 ------HYVYLPIPEVIAYPRR 390 (411)
T ss_pred ------EEEEEeHHHHhcCCCC
Confidence 5788999999987664
No 16
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.1e-80 Score=655.20 Aligned_cols=356 Identities=24% Similarity=0.349 Sum_probs=315.7
Q ss_pred CCCceeEecCccCCCccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhc---CCeee
Q 011084 62 GQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA---QKTLE 138 (494)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~---~~~ie 138 (494)
+.+...|+++. ||.+.++.+..+|||||||||+|||||+||+++++.+...+...+||||++||+||++ +++++
T Consensus 59 ~~~~~~~~~ag---pr~~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~ 135 (443)
T PRK06830 59 GTEPPSFEKAG---PREKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVE 135 (443)
T ss_pred ccccchhhhcC---CcceeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEE
Confidence 33456888887 9999999999999999999999999999999999998765556899999999999998 89999
Q ss_pred cCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 139 VTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 139 Lt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
||++.++.|+++||| +|||+|.+ +++++++++|++++||+||+||||||+++|..|+|++++++++++|||||||
T Consensus 136 Lt~~~v~~i~~~GGT-iLGTsR~~----~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKT 210 (443)
T PRK06830 136 LTPEVVADIHEFGGT-ILGSSRGP----QDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKT 210 (443)
T ss_pred CCHHHHhhHHhCCCc-cccCCCCc----hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 999999999999998 99999965 3689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhc-CCcEEEeCCcchhhccc
Q 011084 219 LNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQS-HPNMVILGEEVAASKLT 297 (494)
Q Consensus 219 IDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat-~p~~ilIpEe~~~~~~t 297 (494)
|||||+++| +|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||+ +||+|||||.++ +
T Consensus 211 IDNDi~~td--~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f----~ 284 (443)
T PRK06830 211 IDNDINFIQ--KSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPF----D 284 (443)
T ss_pred cCCCCcCcc--cCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCC----C
Confidence 999999988 999999999999999999999999998889999999999999999999999 799999999985 4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhh
Q 011084 298 LFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQ 377 (494)
Q Consensus 298 L~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~ 377 (494)
|+. ...+++.|++|++. ++|+|||||||+...+.+ +
T Consensus 285 l~~-~~~ll~~l~~r~~~-~~~~VIVVAEGag~~l~~------------------------------------------~ 320 (443)
T PRK06830 285 LEG-PNGLLAALEKRLAE-RGHAVIVVAEGAGQELFD------------------------------------------D 320 (443)
T ss_pred chh-HHHHHHHHHHHHHh-CCceEEEEecCccccccc------------------------------------------c
Confidence 543 24567788888865 899999999999543211 0
Q ss_pred hhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 011084 378 LLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILA 457 (494)
Q Consensus 378 l~~~~D~~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~ 457 (494)
...+|++||+++.++ ..+|++.++++++++ +..+++|+..|||+|||+.||++|+.||+.||+.|+++++
T Consensus 321 -~~~~Da~gn~~l~~i--g~~L~~~i~~~~~~~-------~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~ 390 (443)
T PRK06830 321 -TGETDASGNPKLGDI--GLFLKDRIKEYFKAR-------GIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAM 390 (443)
T ss_pred -cccccccCCcccccH--HHHHHHHHHHHhccc-------CCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 125799999999885 466777666665433 1116889999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCCCCCcceEEccccHHhHhcccc
Q 011084 458 AGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFS 492 (494)
Q Consensus 458 ~g~tG~mv~i~~~~~~~~~w~~~~vPl~~~~~~~~ 492 (494)
+|+||+|++++|. ++..+||..+++.+|
T Consensus 391 ~G~tg~~Vg~~~~-------~~~~vPl~~v~~~~k 418 (443)
T PRK06830 391 AGKTGMVVGRWNN-------RFVHLPIDLAVSKRK 418 (443)
T ss_pred CCCCCEEEEEECC-------EEEEEeHHHHhccCC
Confidence 9999999999987 478899999987664
No 17
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=2.4e-80 Score=633.50 Aligned_cols=320 Identities=24% Similarity=0.375 Sum_probs=282.9
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeec-CHhHHhcccccCCcccccccCCCCC--
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEV-TKEILSTYKNQGGYDMLGRTKDQIR-- 164 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieL-t~~~v~~~~n~GG~~~lgS~R~k~~-- 164 (494)
|||||||||||||||++|+++++++.+ +++++||||++||+||+++++++| +++.++.|+++||+ +|||+|.++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~-~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt-~LgtsR~~~~~~ 78 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIA-EYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT-ILGSSRTNPFKY 78 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHH-cCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc-cccCCCCCcccc
Confidence 699999999999999999999998753 447899999999999999999999 99999999999998 9999998764
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~ 244 (494)
+++++++++++|++++||+||+||||||+++|+.|+| . +++||||||||||||++|| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~--gi~vigiPkTIDNDl~gtd--~tiGfdTA~~~~~~~ 150 (324)
T TIGR02483 79 EEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD----K--GLPVVGVPKTIDNDLEATD--YTFGFDTAVEIATEA 150 (324)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh----c--CCCEEeeccccCCCCcCCc--cCcCHHHHHHHHHHH
Confidence 3589999999999999999999999999999999997 2 3999999999999999998 999999999999999
Q ss_pred HHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 011084 245 ISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL 324 (494)
Q Consensus 245 I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv 324 (494)
|++++.||.|++| |||||+|||+|||||++||||++||+|||||+++ ++ +++++.|++|+++|++|++|||
T Consensus 151 i~~i~~ta~S~~r-~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~~----~~----~~l~~~v~~~~~~g~~~~vvvv 221 (324)
T TIGR02483 151 LDRLHTTAESHHR-VMVVEVMGRHAGWIALHSGIAGGADVILIPEIPF----DI----DSVCEKVRERFARGKRFAIVVV 221 (324)
T ss_pred HHHHHHHHhhcCC-EEEEEEcCCChhHHHHHHHhccCCCEEEecCCCC----CH----HHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999875 8999999999999999999999999999999974 43 5568888999999999999999
Q ss_pred eCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHH
Q 011084 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVE 404 (494)
Q Consensus 325 ~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~ 404 (494)
|||+.+...... +.. ..+|+|||++++++ .++|+++++
T Consensus 222 sEG~~~~~~~~~-------------------------------------~~~---~~~d~~gh~~~~~~--~~~l~~~i~ 259 (324)
T TIGR02483 222 AEGAKPKGGEMV-------------------------------------VQE---GVKDAFGHVRLGGI--GNWLAEEIE 259 (324)
T ss_pred ecCccccccchh-------------------------------------ccc---cccccccCcccCcH--HHHHHHHHH
Confidence 999976543210 000 24799999999884 355555554
Q ss_pred HHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccH
Q 011084 405 VEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPI 484 (494)
Q Consensus 405 ~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl 484 (494)
+ +. | +++|...|||+||||.||+||+.+|++||..|++++++|++|+|+++++.+ +.-+||
T Consensus 260 ~----~~------g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~ 320 (324)
T TIGR02483 260 R----RT------G--IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTD-------IVYVPI 320 (324)
T ss_pred H----hc------C--CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEeeH
Confidence 4 32 1 789999999999999999999999999999999999999999999999875 667788
Q ss_pred HhH
Q 011084 485 TVR 487 (494)
Q Consensus 485 ~~~ 487 (494)
.++
T Consensus 321 ~~~ 323 (324)
T TIGR02483 321 AEA 323 (324)
T ss_pred HHh
Confidence 764
No 18
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.8e-79 Score=625.65 Aligned_cols=302 Identities=25% Similarity=0.424 Sum_probs=274.2
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC-CCC
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 165 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k-~~~ 165 (494)
+||||++|||||||||++|+|+++++.. .+++||||++||+||+++++++|+++.++.|.++||+ +|||+|.+ +++
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 78 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS--EGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT-ILGSARFPEFKD 78 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH--CCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc-ccccCCCCCcCC
Confidence 6999999999999999999999999864 3789999999999999999999999999999999998 99999975 567
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I 245 (494)
++++++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd--~s~Gf~TA~~~~~~~i 150 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTD--YTIGFDTALNTAVEAI 150 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCc--cCcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999984 6899999999999999998 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 011084 246 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 325 (494)
Q Consensus 246 ~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~ 325 (494)
++|+.||.|++ ||||||+|||+|||||++||||++||+|||||+++ ++ +++++.|++|+++|++|++||||
T Consensus 151 ~~l~~~a~s~~-rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~~----~~----~~l~~~i~~r~~~g~~~~vivvs 221 (320)
T PRK03202 151 DRLRDTASSHE-RVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPF----DI----EELCAKIKKGRERGKKHAIIVVA 221 (320)
T ss_pred HHHHHHHhccC-CEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCCC----CH----HHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999998876 59999999999999999999999999999999974 43 55688889999999999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 011084 326 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 405 (494)
Q Consensus 326 EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~ 405 (494)
||+.+. ..|++.+++
T Consensus 222 Eg~~~~-----------------------------------------------------------------~~l~~~i~~ 236 (320)
T PRK03202 222 EGVMPA-----------------------------------------------------------------EELAKEIEE 236 (320)
T ss_pred CCCCCH-----------------------------------------------------------------HHHHHHHHH
Confidence 999641 013333333
Q ss_pred HHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHH
Q 011084 406 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 485 (494)
Q Consensus 406 ~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~ 485 (494)
++ + +++|+..|||+||||.||+|||.+|++||..|++++++|++|+|+++++. ++..+||.
T Consensus 237 ~~----------~--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~v~~~~~-------~~~~vpl~ 297 (320)
T PRK03202 237 RT----------G--LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRMVGIQNN-------KIVHVPIE 297 (320)
T ss_pred Hh----------C--CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEEeHH
Confidence 32 1 78999999999999999999999999999999999999999999999987 47889999
Q ss_pred hHh-cccc
Q 011084 486 VRF-SFFS 492 (494)
Q Consensus 486 ~~~-~~~~ 492 (494)
+++ +.++
T Consensus 298 ~v~~~~~~ 305 (320)
T PRK03202 298 EAVENMKH 305 (320)
T ss_pred HHHhcCCC
Confidence 999 7665
No 19
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=3.7e-79 Score=618.33 Aligned_cols=299 Identities=26% Similarity=0.399 Sum_probs=267.1
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC-CCCh
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRTT 166 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k-~~~~ 166 (494)
||||++|||||||||++|+++++++.. .+++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +.++
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY--HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT-ILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc-eeccCCCCccCCH
Confidence 699999999999999999999998864 3789999999999999999999999999999999998 99999975 6678
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~ 246 (494)
+++++++++|++++||+||+||||||+++|+.|+|++ +++||||||||||||++|| +|||||||+++++++|+
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td--~s~GfdTA~~~~~~~i~ 150 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTD--YTIGFDTALNTIIDAVD 150 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCcc--cCcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999974 6899999999999999988 99999999999999999
Q ss_pred HHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 011084 247 NVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326 (494)
Q Consensus 247 nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~E 326 (494)
+++.+|.|++ ||||||+|||+|||||++||||++||+|||||+++ ++ +++++.|++|+++|++|++|||||
T Consensus 151 ~i~~ta~s~~-rv~ivEvMGR~~G~lAl~~~la~gad~iliPE~~~----~~----~~l~~~i~~r~~~g~~~~iIvvaE 221 (301)
T TIGR02482 151 KIRDTATSHE-RAFVIEVMGRHAGDLALYSGIATGAEIIIIPEFDY----DI----DELIQRLKEQHEAGKKHSIIIVAE 221 (301)
T ss_pred HHHHHhhcCC-CEEEEEeCCCCHHHHHHHHHHHcCCCEEEECCCCC----CH----HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9987788776 59999999999999999999999999999999974 44 455788899999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHH
Q 011084 327 GLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVE 406 (494)
Q Consensus 327 Gl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~~ 406 (494)
|+... . ...|++++
T Consensus 222 G~~~~--~-------------------------------------------------------------~~~l~~~l--- 235 (301)
T TIGR02482 222 GNIVG--S-------------------------------------------------------------AKEVAKKI--- 235 (301)
T ss_pred CCcCC--c-------------------------------------------------------------HHHHHHHH---
Confidence 95410 0 01133333
Q ss_pred HHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHHh
Q 011084 407 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITV 486 (494)
Q Consensus 407 l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~~ 486 (494)
+++. + +++|...|||.||||.||+|||.+|++||..|++++++|++|+|+++++.+ +.-+||.+
T Consensus 236 -~~~~------g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~~~ 299 (301)
T TIGR02482 236 -EEAT------G--IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMIGIQNNK-------IVTHPIEE 299 (301)
T ss_pred -HHhc------C--CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEeeHHH
Confidence 2221 2 889999999999999999999999999999999999999999999999874 66778876
Q ss_pred H
Q 011084 487 R 487 (494)
Q Consensus 487 ~ 487 (494)
+
T Consensus 300 ~ 300 (301)
T TIGR02482 300 A 300 (301)
T ss_pred h
Confidence 5
No 20
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=8.4e-79 Score=630.05 Aligned_cols=327 Identities=22% Similarity=0.361 Sum_probs=287.7
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC--CeeecCHhHHhcccccCCcccccccCC-
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKD- 161 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~--~~ieLt~~~v~~~~n~GG~~~lgS~R~- 161 (494)
+++||||++|||||||||++|+++++++.. +++.+||||++||+||+++ ++++|+++.++.|.++||| +|||+|.
T Consensus 3 ~~~~I~IltsGG~apGmNa~i~~vv~~a~~-~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 80 (360)
T PRK14071 3 EKKRIGILTSGGDCAGLNAVIRAVVHRARG-TYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT-ILGTTNKG 80 (360)
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 368999999999999999999999998853 3478999999999999999 9999999999999999999 9999962
Q ss_pred -CCC-------ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcC
Q 011084 162 -QIR-------TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVG 233 (494)
Q Consensus 162 -k~~-------~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~G 233 (494)
.++ .++++++++++|++++||+||+||||||++.|+.|++. .+++||||||||||||++|| +|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td--~t~G 153 (360)
T PRK14071 81 DPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATE--VSIG 153 (360)
T ss_pred CccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcc--cCcC
Confidence 221 25688999999999999999999999999999999873 26899999999999999998 9999
Q ss_pred chhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHH
Q 011084 234 FDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARA 313 (494)
Q Consensus 234 FdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~ 313 (494)
||||+++++++|++++.+|.|++ +|||||+|||+|||||+++|||++||+|||||.+ +++ +++++.|++|+
T Consensus 154 f~TA~~~~~~~id~i~~ta~s~~-rv~ivEvMGR~~G~LAl~~~la~ga~~iliPE~~----~~~----~~l~~~i~~~~ 224 (360)
T PRK14071 154 FDTAVNIATEALDRLHFTAASHN-RVMILEVMGRDAGHIALAAGIAGGADVILIPEIP----YTL----ENVCKKIRERQ 224 (360)
T ss_pred hhHHHHHHHHHHHHHHhhhcccC-CEEEEEECCCCccHHHHHhHhhcCCCEEEECCCC----CCH----HHHHHHHHHHH
Confidence 99999999999999999999876 4899999999999999999999999999999987 454 44577788999
Q ss_pred HcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchh
Q 011084 314 EQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQI 393 (494)
Q Consensus 314 ~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i 393 (494)
+++++|+|||||||+.+..++ -..++|++||++++++
T Consensus 225 ~~~~~~~iivvsEG~~~~~g~-------------------------------------------~~~~~d~~g~~~~~~~ 261 (360)
T PRK14071 225 EEGKNFCLVVVSEAVRTEEGE-------------------------------------------QVTKTQALGEDRYGGI 261 (360)
T ss_pred HcCCCeEEEEEcCCCcccccc-------------------------------------------cccccccccccccCcH
Confidence 889999999999999653221 0123799999999884
Q ss_pred hhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 011084 394 ETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNP 473 (494)
Q Consensus 394 ~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~ 473 (494)
.++|+++|++++ | +++|...|||+||||.||+||+.+|++||..|++++++|+||+|+++++.
T Consensus 262 --~~~l~~~i~~~~------g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~t~~mv~~~~~--- 324 (360)
T PRK14071 262 --GQYLAEQIAERT------G------AETRVTVLGHIQRGGIPSPRDRLLASAFGVAAVDLIAQGKFDRMVAWQNR--- 324 (360)
T ss_pred --HHHHHHHHHHhc------C------CCeeEEecChhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC---
Confidence 456666554432 1 78999999999999999999999999999999999999999999999987
Q ss_pred CcceEEccccHHhHhccccC
Q 011084 474 ANKWRCGAAPITVRFSFFSI 493 (494)
Q Consensus 474 ~~~w~~~~vPl~~~~~~~~~ 493 (494)
++..+||.++++.+|-
T Consensus 325 ----~~~~vpl~~v~~~~~~ 340 (360)
T PRK14071 325 ----QVVSVPIAEAIATYRA 340 (360)
T ss_pred ----EEEEEeHHHHhcCCCC
Confidence 4788999999987664
No 21
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=1.7e-78 Score=617.72 Aligned_cols=303 Identities=24% Similarity=0.377 Sum_probs=271.9
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCC-CCCC
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD-QIRT 165 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~-k~~~ 165 (494)
+||||++|||||||||++|+++++.+. +.+++||||++||+||+++++++|+++.++.|+++||| +|||+|. .+.+
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT-FLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe-eeccCCCCccCC
Confidence 589999999999999999999999875 45789999999999999999999999999999999999 9999996 5667
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I 245 (494)
++++++++++|++++||+|++||||||+++|.+|+|+ +++|||||||||||+++|| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd--~t~Gf~TA~~~~~~~i 149 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTD--YTIGFDTALNTVVEAI 149 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCc--cCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 4899999999999999998 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 011084 246 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 325 (494)
Q Consensus 246 ~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~ 325 (494)
++++.++.|+ +||||||+|||+|||||++||||++||+|||||+++ +++ ++++.|++|+++|++|+|||||
T Consensus 150 ~~i~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~ga~~iliPE~~~----~~~----~~~~~i~~~~~~g~~~~vivva 220 (317)
T cd00763 150 DRIRDTSSSH-QRISVVEVMGRHCGDIALAAGIAGGAEFIVIPEAEF----DRE----EVANRIKAGIERGKKHAIVVVA 220 (317)
T ss_pred HHHHHHHhcC-CCEEEEEeCCCChHHHHHHHHHHcCCCEEEeCCCCC----CHH----HHHHHHHHHHHcCCCcEEEEEe
Confidence 9998767665 469999999999999999999999999999999974 544 4567778888889999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 011084 326 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 405 (494)
Q Consensus 326 EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~ 405 (494)
||+.+. +.|++++++
T Consensus 221 EG~~~~-----------------------------------------------------------------~~l~~~l~~ 235 (317)
T cd00763 221 EGVYDV-----------------------------------------------------------------DELAKEIEE 235 (317)
T ss_pred CCCCCH-----------------------------------------------------------------HHHHHHHHH
Confidence 998531 012333333
Q ss_pred HHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHH
Q 011084 406 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 485 (494)
Q Consensus 406 ~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~ 485 (494)
++ | +++|...|||+||||.||+||+.+|++||..|++++++|++|+|+++++. ++..+||.
T Consensus 236 ~~------g------~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv~~~~~-------~~~~~pl~ 296 (317)
T cd00763 236 AT------G------FETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNE-------QLVHHDII 296 (317)
T ss_pred Hh------C------CCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEecHH
Confidence 32 1 78899999999999999999999999999999999999999999999987 47889999
Q ss_pred hHhccccC
Q 011084 486 VRFSFFSI 493 (494)
Q Consensus 486 ~~~~~~~~ 493 (494)
++++.+|-
T Consensus 297 ~~~~~~k~ 304 (317)
T cd00763 297 DAIENMKP 304 (317)
T ss_pred HHhhCCCC
Confidence 99987663
No 22
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=2.4e-78 Score=628.75 Aligned_cols=336 Identities=20% Similarity=0.224 Sum_probs=289.2
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHh---HHhcccccCCcccccccCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKE---ILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~---~v~~~~n~GG~~~lgS~R~k 162 (494)
.+||||+||||||||||++|+++++++...+++++||||++||+||+++++++|++. .++.++++||| +|||+|.+
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt-~LGtsR~~ 81 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGS-PIGNSRVK 81 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCc-eeccCCCC
Confidence 479999999999999999999999988766678999999999999999999999985 34559999999 99999987
Q ss_pred CC-------------ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCC
Q 011084 163 IR-------------TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVE 229 (494)
Q Consensus 163 ~~-------------~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie 229 (494)
+. .++.+++++++|++++||+||+||||||+++|++|++++.+++++++||||||||||||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td-- 159 (403)
T PRK06555 82 LTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIR-- 159 (403)
T ss_pred ccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCcc--
Confidence 62 156789999999999999999999999999999999999998889999999999999999998
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhh--------------------cCCcEEEeCC
Q 011084 230 TNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQ--------------------SHPNMVILGE 289 (494)
Q Consensus 230 ~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLa--------------------t~p~~ilIpE 289 (494)
+|||||||+++++++|++|+.|+.|++++++|||||||+|||||+.+||| ++||+|||||
T Consensus 160 ~t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE 239 (403)
T PRK06555 160 QSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPE 239 (403)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccC
Confidence 89999999999999999999999999976666699999999999999999 7899999999
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhcc
Q 011084 290 EVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEF 369 (494)
Q Consensus 290 e~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~ 369 (494)
.++ ++ +.+++.|++++++ ++|+|||||||+....+. .++. +..++
T Consensus 240 ~~~----~~----e~~~~~ik~~~~~-k~~~iIvVaEG~~~~~~~-----~~~~---------------------~~g~~ 284 (403)
T PRK06555 240 MAF----DL----EAEAERLKAVMDE-VGNVNIFLSEGAGLDAIV-----AEME---------------------AAGEE 284 (403)
T ss_pred CCC----CH----HHHHHHHHHHHHh-CCCEEEEEeCCCCcccch-----hhhh---------------------hccCc
Confidence 974 43 4457778777765 999999999999643221 0000 00111
Q ss_pred ChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccce-eeeecCcccccCCCCCHHHHHHHHHH
Q 011084 370 LPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFN-AICHFFGYQARGSLPSKFDCDYAYVL 448 (494)
Q Consensus 370 lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~-~r~~~lGy~~R~~~PS~fD~~~a~~l 448 (494)
..+|+|||+++.+++..++|++.|++++. ++ +|...|||+||||.||+||+.+|++|
T Consensus 285 ----------~~~Da~G~~~l~~~~~g~~la~~i~~~~g------------~e~~r~~~lGy~qRgg~psa~Dr~la~~l 342 (403)
T PRK06555 285 ----------VKRDAFGHVKLDTINPGAWFAKQFAELLG------------AEKVMVQKSGYFARSAPANAEDLRLIKSM 342 (403)
T ss_pred ----------cccccccceecCCCcHHHHHHHHHHHHhC------------CCceEEecCChhhcCCCCCHHHHHHHHHH
Confidence 25799999999998777777776655432 43 89999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEE---ecCCCCCcceEEccccHHhHhc
Q 011084 449 GHICYHILAAGLNGYMATV---TNLKNPANKWRCGAAPITVRFS 489 (494)
Q Consensus 449 G~~Av~li~~g~tG~mv~i---~~~~~~~~~w~~~~vPl~~~~~ 489 (494)
|..||+++++|++| |+++ +|.+ +..+||.+++.
T Consensus 343 G~~AV~~~~~G~sg-~v~~~~~~~g~-------~~~vp~~~~~~ 378 (403)
T PRK06555 343 VDLAVECALRGVSG-VIGHDEEQGGK-------LRAIEFPRIKG 378 (403)
T ss_pred HHHHHHHHHCCCCC-eEEEEeeeCCE-------EEEEEHHHHhc
Confidence 99999999999999 5676 6654 67789888774
No 23
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2.1e-74 Score=641.28 Aligned_cols=320 Identities=20% Similarity=0.278 Sum_probs=283.7
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC--CeeecCHhHHhcccccCCcccccccCCC-C
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ-I 163 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~--~~ieLt~~~v~~~~n~GG~~~lgS~R~k-~ 163 (494)
+||||+||||||||||++|+++++.+. +.+.+||||++||+||+++ ++++|+|+.|+.|+++||| +|||+|.+ +
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~--~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~~~ 77 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAI--YVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT-IIGTARCKEF 77 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc-eecCCCCCcc
Confidence 589999999999999999999999874 4588999999999999999 9999999999999999998 99999987 5
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH-----------------HHhcCCCCeEEEeeecccCCCCCC
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGDLKNQ 226 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~-----------------~~~~~~~i~VIgVPkTIDNDl~~~ 226 (494)
++++.+++++++|++++||+||+||||||+++|..|+++ ..+++.+++|||||||||||+++|
T Consensus 78 ~~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gT 157 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGT 157 (745)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCC
Confidence 677889999999999999999999999999999987763 344566899999999999999999
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHH
Q 011084 227 FVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQIC 306 (494)
Q Consensus 227 ~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~ 306 (494)
| +|||||||+++++++|++++.+|.||+| +||||||||+||||||++|||++||+|||||++++.+ +.++|+
T Consensus 158 d--~TiGfdTA~~~i~~aid~i~~ta~Sh~R-~fvvEvMGR~~G~LAl~aalA~gad~iliPE~~~~~~-----~~~~i~ 229 (745)
T TIGR02478 158 D--MTIGADSALHRICEAIDAISSTAQSHQR-AFVVEVMGRHCGYLALMAAIATGADYVFIPERPPEEG-----WEDQLC 229 (745)
T ss_pred c--CCCCHHHHHHHHHHHHHHHHhhhhccCC-EEEEEEcCccccHHHHHHHhccCCCEEEecCCCCCch-----HHHHHH
Confidence 8 9999999999999999999999998865 8999999999999999999999999999999986543 467779
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCC
Q 011084 307 DAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDD 386 (494)
Q Consensus 307 ~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G 386 (494)
+.++++...|++|+|||||||+.+. +|
T Consensus 230 ~~l~~~~~~gk~~~iIvvaEG~~d~-----------------------------------------------------~g 256 (745)
T TIGR02478 230 HKLKRNRKAGKRKNIVIVAEGAIDR-----------------------------------------------------DL 256 (745)
T ss_pred HHHHHHHHcCCCcEEEEEeCCcccc-----------------------------------------------------cC
Confidence 9999888899999999999999742 23
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ce
Q 011084 387 SAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GY 463 (494)
Q Consensus 387 ~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t---G~ 463 (494)
|+. ..+.|+ +.|+++. + +++|...|||+||||.||+|||.+|++||..|++++++|.+ |+
T Consensus 257 ~~i-----~~~~l~----~~l~~~~------g--~~~R~~~LGh~QRgg~Psa~Dr~la~~~G~~Av~~~~~g~~~~~~~ 319 (745)
T TIGR02478 257 NPI-----TSEDVK----DVLVERL------G--LDTRITVLGHVQRGGAPSAYDRILATRQGVEAVLAVLESTPETPSP 319 (745)
T ss_pred Ccc-----cHHHHH----HHHHHhc------C--CceEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 321 112234 4443332 1 78999999999999999999999999999999999999987 99
Q ss_pred EEEEecCCCCCcceEEccccHHhHhccccCC
Q 011084 464 MATVTNLKNPANKWRCGAAPITVRFSFFSIV 494 (494)
Q Consensus 464 mv~i~~~~~~~~~w~~~~vPl~~~~~~~~~~ 494 (494)
|+++++ |++..+||.++++.+|-|
T Consensus 320 mv~~~~-------~~~~~~pl~~~~~~~k~v 343 (745)
T TIGR02478 320 VISLRG-------NKIVRKPLVEAVAQTKTV 343 (745)
T ss_pred EEEEEC-------CEEEEEeHHHHHhhcCCC
Confidence 999998 568999999999988754
No 24
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=1.5e-74 Score=581.23 Aligned_cols=281 Identities=27% Similarity=0.447 Sum_probs=247.7
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC-CCC
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 165 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k-~~~ 165 (494)
|||||++|||||||||++|+++++++. ..+++||||++||+||+++++++|++++++.|+++||+ +|||+|.+ +++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~--~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI--RRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGT-ILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH--HTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSS-TTTBBBSSGGGS
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH--hcCCEEEEEEccCccceeeeEEeecccCccccccCCCc-EeCcccCccccc
Confidence 699999999999999999999999875 46789999999999999999999999999999999999 99999976 567
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I 245 (494)
++.+++++++|++++||+||+||||||+++|+.|+|++. ++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd--~siGf~TA~~~~~~~i 150 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTD--YSIGFDTAVNYIAEAI 150 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSS--S-BTHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCC--CCcccCchhHHHHHHH
Confidence 888999999999999999999999999999999998764 899999999999999998 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 011084 246 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 325 (494)
Q Consensus 246 ~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~ 325 (494)
+++++||.|++ +|||||+|||+|||||++||||++||+|||||++. .++++++.|++|++++|+|++|||+
T Consensus 151 ~~i~~~a~s~~-rv~ivEvmGr~~G~LAl~~ala~~a~~ilipE~~~--------~~~~~~~~i~~~~~~~k~~~iVvvs 221 (282)
T PF00365_consen 151 DNIKTTARSHN-RVFIVEVMGRNAGWLALAAALATGADLILIPEEPF--------DLDELLDDIKKRYERGKRYGIVVVS 221 (282)
T ss_dssp HHHHHHHHHST-EEEEEEESSTTSTHHHHHHHHHHTSSEEEBTTSHH--------HHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHhhcccC-CceEEEeCCCCcCHHHHHHHhccCCCEEEEecccc--------chHHHHHHhhhhhcccCceEEEEec
Confidence 99999998875 69999999999999999999999999999999973 2677788999999999999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 011084 326 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 405 (494)
Q Consensus 326 EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~ 405 (494)
||+.+..|- + .+++++
T Consensus 222 EG~~~~~~i------------------------------------------------------------~----~~~~~~ 237 (282)
T PF00365_consen 222 EGAKDGQPI------------------------------------------------------------S----SEFIKE 237 (282)
T ss_dssp TTSBSSHBH------------------------------------------------------------H----HHHHHH
T ss_pred ccccccccc------------------------------------------------------------c----cccccc
Confidence 999863221 0 111222
Q ss_pred HHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 011084 406 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAA 458 (494)
Q Consensus 406 ~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~ 458 (494)
.+++.. + +++|...|||.||||.||+|||.+|.+||..|++++.+
T Consensus 238 ~~~~~~------~--~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 238 LLEEGL------G--FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp HHHHTT------T--SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccc------c--cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 222211 2 89999999999999999999999999999999999864
No 25
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.4e-73 Score=631.94 Aligned_cols=321 Identities=19% Similarity=0.257 Sum_probs=282.7
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC--CeeecCHhHHhcccccCCcccccccCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~--~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
+.+||||+||||||||||++|+++++.+. +.+.+||||++||+||+++ ++.+|+|++|+.|.++||| +|||+|.+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~--~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT-~LGTsR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT-IIGSARCK 78 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC-cccCCCCC
Confidence 35799999999999999999999999874 5688999999999999999 7899999999999999998 99999976
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH-----------------HHHHhcCCCCeEEEeeecccCCCC
Q 011084 163 -IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA-----------------ETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 163 -~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~La-----------------e~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+.+.+++++++++|++++||+||+||||||+++|..|+ ++..+++..++|||||||||||++
T Consensus 79 ~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 79 EFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 56678999999999999999999999999999999764 233345568999999999999999
Q ss_pred CCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHH
Q 011084 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQ 304 (494)
Q Consensus 225 ~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~ 304 (494)
+|| +|||||||+++++++|++|+.||.||+| +||||||||+||||||++|||++||+|||||.++. .++.++
T Consensus 159 gTD--~TiGfdTAl~~i~eaId~i~~tA~Sh~R-~fVVEvMGR~~G~LAl~aglA~gAd~ilIPE~p~~-----~~~~~~ 230 (762)
T cd00764 159 GTD--MTIGTDSALHRICEVVDAITTTAQSHQR-TFVLEVMGRHCGYLALVSGLATGADWIFIPERPPE-----DGWEDQ 230 (762)
T ss_pred CCc--CCCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCCCchHHHHHHHhccCCCEEEecCCCCc-----hhHHHH
Confidence 998 9999999999999999999999999975 89999999999999999999999999999999864 345788
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCC
Q 011084 305 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 384 (494)
Q Consensus 305 i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~ 384 (494)
|++.+++|+..||+|+|||||||+.+..
T Consensus 231 i~~~l~~~~~~gk~~~iIVVaEGa~d~~---------------------------------------------------- 258 (762)
T cd00764 231 MCRRLSEHRSRGKRLNIIIVAEGAIDDQ---------------------------------------------------- 258 (762)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCcccc----------------------------------------------------
Confidence 8999999999999999999999997531
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---
Q 011084 385 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN--- 461 (494)
Q Consensus 385 ~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t--- 461 (494)
|+.. ++ ..|++.|+++. | +++|...|||.||||.||+|||.||++||..|++++++|.+
T Consensus 259 -g~~i-----~~----~~l~~~l~~~~------g--~d~R~t~LGh~QRGG~Psa~Dr~la~~~G~~AV~~l~~g~~~~~ 320 (762)
T cd00764 259 -LKPI-----TS----EDVKDLVVERL------G--LDTRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDTP 320 (762)
T ss_pred -CCCc-----cH----HHHHHHHHHhc------C--CCeeEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1211 11 23444444442 2 89999999999999999999999999999999999999986
Q ss_pred ceEEEEecCCCCCcceEEccccHHhHhccccC
Q 011084 462 GYMATVTNLKNPANKWRCGAAPITVRFSFFSI 493 (494)
Q Consensus 462 G~mv~i~~~~~~~~~w~~~~vPl~~~~~~~~~ 493 (494)
++|++++|.+ +.-+||.++++..|.
T Consensus 321 ~~~i~~~~~~-------i~~~pl~e~v~~~k~ 345 (762)
T cd00764 321 ACVVSLNGNK-------AVRLPLMECVQLTKD 345 (762)
T ss_pred CEEEEEECCE-------EEEEEHHHHHhhccc
Confidence 8999999975 677899998877664
No 26
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=3.5e-73 Score=631.44 Aligned_cols=325 Identities=18% Similarity=0.276 Sum_probs=288.9
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
..+++||||++|||||||||++|+++++++. +.+.+||||++||+||+++++.+|++..++.|+++||| +|||+|..
T Consensus 386 ~~~~~rIaIltsGG~apGmNaair~vv~~a~--~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 462 (745)
T TIGR02478 386 KASRLRIAIIHVGAPAGGMNAATRSAVRYAI--ARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNREL 462 (745)
T ss_pred CCCceEEEEEecCCCchhHHHHHHHHHHHHH--hCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCC
Confidence 3556999999999999999999999999874 45789999999999999999999999999999999999 99999985
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-CCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHH
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~ 241 (494)
. ++++++++++|++++||+||+||||||+++|.+|+++..+. +.+++||||||||||||++|| +|||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~t~GfdTA~~~~ 538 (745)
T TIGR02478 463 P--GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTE--YSLGSDTALNEI 538 (745)
T ss_pred c--hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--cCCCHHHHHHHH
Confidence 4 67899999999999999999999999999999999985443 367999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcC-CCeE
Q 011084 242 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQD-KNHG 320 (494)
Q Consensus 242 ~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~g-k~~g 320 (494)
+++|++++.+|.|++++|||||+|||+|||||++||||++||+|||||++ .+++++.+.+ +.+.+|+..+ ++++
T Consensus 539 ~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~gad~iliPE~~----~~~~~l~~~v-~~i~~~~~~~~~~~~ 613 (745)
T TIGR02478 539 TEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEG----ISLKDLQEDI-EHLKEKFAHGNRAGK 613 (745)
T ss_pred HHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcCCCEEEeCCCC----CCHHHHHHHH-HHHHHHHhcCCCCce
Confidence 99999999999999878999999999999999999999999999999997 4677776664 4577888888 8999
Q ss_pred EEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHH
Q 011084 321 VILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLA 400 (494)
Q Consensus 321 vVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~ 400 (494)
+|+++||+.+..+ .+.|+
T Consensus 614 iiv~~Eg~~~~~~--------------------------------------------------------------~~~l~ 631 (745)
T TIGR02478 614 LILRNENASKNYT--------------------------------------------------------------TDFIA 631 (745)
T ss_pred EEEEeCCCccCCC--------------------------------------------------------------HHHHH
Confidence 9999999754211 12355
Q ss_pred HHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC------------CCceEEEEe
Q 011084 401 HLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAG------------LNGYMATVT 468 (494)
Q Consensus 401 ~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g------------~tG~mv~i~ 468 (494)
++++++++. . |++|...|||+||||.||+|||.+|++||..|++++.+| ++|+|++++
T Consensus 632 ~~i~~e~~~---------~-~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~ 701 (745)
T TIGR02478 632 RIISEEAKG---------R-FDARTAVLGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGIR 701 (745)
T ss_pred HHHHHHhcC---------C-CceEeccCCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccCCCccEEEEEE
Confidence 555544321 1 899999999999999999999999999999999999998 799999999
Q ss_pred cCC-------------------CCCcceEEccccHHhHhccc
Q 011084 469 NLK-------------------NPANKWRCGAAPITVRFSFF 491 (494)
Q Consensus 469 ~~~-------------------~~~~~w~~~~vPl~~~~~~~ 491 (494)
+.+ .|.++||....||.++|...
T Consensus 702 ~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~~~~~~~~~ 743 (745)
T TIGR02478 702 GSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRPLVRILAGR 743 (745)
T ss_pred CCEEEEEEHHHHHhhccCcccCCCCCchhhhHHHHHHHhcCC
Confidence 873 68899999999999988643
No 27
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=5.4e-70 Score=603.50 Aligned_cols=326 Identities=16% Similarity=0.201 Sum_probs=284.0
Q ss_pred cCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCC
Q 011084 82 TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 82 ~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
++.+++||||++|||||||||++|+++++++. ..+++||||++||+||+++++++|+|++++.|.++||| +|||+|.
T Consensus 385 ~~~~~~~IaIltsGG~apGmNaairavv~~a~--~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~ 461 (762)
T cd00764 385 PEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGL--AHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRT 461 (762)
T ss_pred CcccccEEEEEecCCCchhHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCC
Confidence 34556899999999999999999999998864 45899999999999999999999999999999999999 9999998
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-CCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
++ ++++++++++|++++||+||+||||||+++|..|+++..+. ..+++|||||||||||+++|| +|||||||+++
T Consensus 462 ~~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd--~siGfdTAln~ 537 (762)
T cd00764 462 LP--KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTD--FSLGSDTALNA 537 (762)
T ss_pred Cc--HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--CCCCHHHHHHH
Confidence 75 57999999999999999999999999999999999976543 357999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeE
Q 011084 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHG 320 (494)
Q Consensus 241 ~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~g 320 (494)
++++|++|+++|.|++++|||||+|||+|||||+++|||++||+|||||++++.+....| ++.+++.++++...|+.+.
T Consensus 538 ~~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~GAd~i~iPE~~~~~~~l~~d-v~~l~~~~~~~~~~g~~~~ 616 (762)
T cd00764 538 LMKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGADAAYVFEEPFNIRDLQEN-VEHLTEKMKTTIGRGLVLR 616 (762)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcCCCEEEeCCCCCCHHHHHHH-HHHHHHHHHHHHhcCCeEe
Confidence 999999999999998878999999999999999999999999999999998543322222 4556788888888899999
Q ss_pred EEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHH
Q 011084 321 VILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLA 400 (494)
Q Consensus 321 vVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~ 400 (494)
+++++||+... +++
T Consensus 617 ~~~~se~~~~~------------------------------------------------------------------~~~ 630 (762)
T cd00764 617 NEKCNENYTTV------------------------------------------------------------------FTY 630 (762)
T ss_pred eeeeecCCccc------------------------------------------------------------------cHH
Confidence 99999987310 122
Q ss_pred HHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------CceEE
Q 011084 401 HLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL---------------NGYMA 465 (494)
Q Consensus 401 ~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~---------------tG~mv 465 (494)
++++++++. + |++|..+|||.||||.||+|||.+|++||..|++++.++. +.+++
T Consensus 631 ~~~~~~~~~----~------~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~i 700 (762)
T cd00764 631 ELYSEEGKG----V------FDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNCVN 700 (762)
T ss_pred HHHHHHHhc----C------CceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCceEEE
Confidence 333444422 1 9999999999999999999999999999999999999853 67788
Q ss_pred EEecC-----------------CCCCcceEEccccHHhHhccc
Q 011084 466 TVTNL-----------------KNPANKWRCGAAPITVRFSFF 491 (494)
Q Consensus 466 ~i~~~-----------------~~~~~~w~~~~vPl~~~~~~~ 491 (494)
++++. ..|..+||....|+.+++.-.
T Consensus 701 g~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~~~~~l~~~ 743 (762)
T cd00764 701 GVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRPLLKILAKY 743 (762)
T ss_pred EEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHHHHHHHhCC
Confidence 88765 357789999999999998754
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-49 Score=421.98 Aligned_cols=474 Identities=26% Similarity=0.245 Sum_probs=397.0
Q ss_pred CCChhhhhhhcCCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceEE
Q 011084 10 ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRV 89 (494)
Q Consensus 10 ~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 89 (494)
.++++|-.|..|.|.||..+.+.. +-...........+..+.|++.||++++.+.=....+..-.|+..........+.
T Consensus 45 ~i~e~~w~~v~~~~~lggt~~g~a-r~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~ 123 (666)
T KOG2440|consen 45 SIKEAQWLRVSYILSLGGTLIGTA-RCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKA 123 (666)
T ss_pred chhhcchhhhCCcccCCCcccccc-cccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhc
Confidence 578899999999999999997642 2211212222222667899999999887764333333222466667777788999
Q ss_pred EEEecCCCCCCcchhHHHHHHHHH-hhCCCCEEEE----------------EccchhhhhcCCeeecC--HhHHhccccc
Q 011084 90 GIVFCGRQSPGGHNVVWGLYDALK-LHNPKSTLLG----------------FLGGSEGLFAQKTLEVT--KEILSTYKNQ 150 (494)
Q Consensus 90 gIl~sGG~aPG~n~vI~gl~~~~~-~~~~~~~v~G----------------f~~G~~GL~~~~~ieLt--~~~v~~~~n~ 150 (494)
||||+||+|||+|+||+|++-.+. ..+.-.+.+| +..|++|++.+++.++. ...+..++..
T Consensus 124 giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~~ 203 (666)
T KOG2440|consen 124 GIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAGG 203 (666)
T ss_pred ceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhcC
Confidence 999999999999999997775442 1122223444 55569999999995554 4567776666
Q ss_pred CCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCC
Q 011084 151 GGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVET 230 (494)
Q Consensus 151 GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~ 230 (494)
+++ +++.+| +.+++|++.++++.+++.++|.+|||||++++++|..++|+++++.+++.|++|||||||||+.-+ .
T Consensus 204 aD~-i~~pe~-~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg--~ 279 (666)
T KOG2440|consen 204 ADT-IFIPER-PGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGG--V 279 (666)
T ss_pred CCE-EEecCC-CCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCC--c
Confidence 665 555555 445699999999999999999999999999999999999999999999999999999999999877 5
Q ss_pred CcCch--hHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHH
Q 011084 231 NVGFD--TICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDA 308 (494)
Q Consensus 231 S~GFd--TA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~ 308 (494)
++||| ||++..+++|.+++.++.|+-++++|||+|||.|+|+|++|+||++++.+.+.+|....+.++.+...++++.
T Consensus 280 p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~ 359 (666)
T KOG2440|consen 280 PSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDV 359 (666)
T ss_pred ccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhc
Confidence 66666 9999999999999999999999999999999999999999999999876666556678888999999999999
Q ss_pred HHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCC--CcccccCChhhhhhhccChhHHHhhhhcCCCCCC
Q 011084 309 VQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV--DNISSQLSPWASALFEFLPPFIKKQLLLQPESDD 386 (494)
Q Consensus 309 i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~--~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G 386 (494)
++.|..+..+|+. ++++++.+.+..+.|.++.+.++.-+... +-+..+++.|..+. +++|..+.+++....+.+|
T Consensus 360 ~~~~~~~~p~~~~--~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~-d~~~~~~~~dv~~w~~~gg 436 (666)
T KOG2440|consen 360 VDPRAEQDPFYGE--IPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAK-DALGELIWKDVGLWLSQGG 436 (666)
T ss_pred cccccccCCCCce--eccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhh-hhhhhhHHHHhhcccccCc
Confidence 9999988899998 99999999999999999999887655443 23666777777766 9999999999999999999
Q ss_pred Ccccchhhh-HHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 011084 387 SAQLSQIET-EKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMA 465 (494)
Q Consensus 387 ~~~~~~i~t-e~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv 465 (494)
+.+..+++| |++..++|+.++.+++.++.|.++.|.+..++++|++|++.|+.||..||+..++.+-..-..+.++.+.
T Consensus 437 s~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvd 516 (666)
T KOG2440|consen 437 SALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVD 516 (666)
T ss_pred hhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccc
Confidence 999999997 8899999999999999999888877999999999999999999999999999999988888888999999
Q ss_pred EEecCCCCCcceEEccccHHhHhccc
Q 011084 466 TVTNLKNPANKWRCGAAPITVRFSFF 491 (494)
Q Consensus 466 ~i~~~~~~~~~w~~~~vPl~~~~~~~ 491 (494)
+..|...+..+|.-...+++..+.++
T Consensus 517 t~~N~~~~~~d~t~Q~a~~T~~~vf~ 542 (666)
T KOG2440|consen 517 TALNAWARVCDSTKQSAFGTKRRVFV 542 (666)
T ss_pred hhHhhhhhhhhhccCCcccccceeEE
Confidence 99999999999999999999887654
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-36 Score=323.16 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=238.3
Q ss_pred EEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCC--eeecCHhHHhcccccCCcccccccCC-CCCChH
Q 011084 91 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK--TLEVTKEILSTYKNQGGYDMLGRTKD-QIRTTE 167 (494)
Q Consensus 91 Il~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~--~ieLt~~~v~~~~n~GG~~~lgS~R~-k~~~~e 167 (494)
|+||||++||||++++.+++.. .+.+.++|+++.||+|++++. +.+++|..++.|...||+ ++|+.|. .+...+
T Consensus 1 v~tsggd~~gmnaavr~~vr~~--i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt-~~g~ar~~~f~~~~ 77 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMG--IYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGT-LIGTARCKAFRGRE 77 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhc--cccCceEEEEecccccccccccchhhcchhhhCCcccCCCc-cccccccccccccc
Confidence 6899999999999999999975 678999999999999999965 789999999999999998 9999995 577788
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHH-----------------hcCCCCeEEEeeecccCCCCCCCCCC
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA-----------------EAKCPTKVVGVPVTLNGDLKNQFVET 230 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~-----------------~~~~~i~VIgVPkTIDNDl~~~~ie~ 230 (494)
.+.++..++-+.+|+.|+++|||+|++.|+.+=+++. ..+..+.++|++.+||||+.+++ .
T Consensus 78 gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~--~ 155 (666)
T KOG2440|consen 78 GRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTD--M 155 (666)
T ss_pred ceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccc--e
Confidence 9999999999999999999999999999988754432 13557899999999999999998 9
Q ss_pred CcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHH
Q 011084 231 NVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQ 310 (494)
Q Consensus 231 S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~ 310 (494)
++|-|||+.- ++|+.|..++.||.| -|++|+|||+|||+|+-.++|+++|.+++||.+... -+++|+.+.
T Consensus 156 ~iG~dsal~r--e~id~~~~ta~sh~R-gFv~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~-------~~q~~~~l~ 225 (666)
T KOG2440|consen 156 TIGIDSALHR--EAIDAITSTAQSHSR-GFVAEVMGRHCGYLALVAAIAGGADTIFIPERPGED-------PEQLCEILD 225 (666)
T ss_pred eeccccchhh--hhhhhhhhhhccCcc-eEEeeehhhccchHHHHHHhhcCCCEEEecCCCCCC-------HHHHHHHHH
Confidence 9999999988 999999999999987 599999999999999999999999999999998642 234444443
Q ss_pred HHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCccc
Q 011084 311 ARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQL 390 (494)
Q Consensus 311 ~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~ 390 (494)
.-.+.| .-+|+|.||.+++-. ..
T Consensus 226 ~~r~~G--ln~viVigG~~~~~g-----------------------------------------------------a~-- 248 (666)
T KOG2440|consen 226 SIRKRG--LNIVIVIGGAIDNTG-----------------------------------------------------AP-- 248 (666)
T ss_pred HHHhCC--CCEEEEEecccCCCC-----------------------------------------------------Cc--
Confidence 333334 667889999986421 11
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 011084 391 SQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL 460 (494)
Q Consensus 391 ~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~ 460 (494)
.+++-|+++.-++. + +.++.+++||.||++.||+|||.+|..+|..|+..++...
T Consensus 249 -------i~ae~vk~~~~k~l------v--~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a 303 (666)
T KOG2440|consen 249 -------IIAEEVKERKLKVL------V--VGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEA 303 (666)
T ss_pred -------ccHHHHHHhhhhee------e--ecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhc
Confidence 12333444433332 1 7899999999999999999999999999999998887644
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.35 E-value=0.46 Score=47.63 Aligned_cols=66 Identities=20% Similarity=0.066 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHcCC------CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhH--
Q 011084 166 TEQVNAALTACKNLNL------DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI-- 237 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~I------d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA-- 237 (494)
++..+.+.+..++|++ |.+|+||||||+-.|..... +.+++|+||-. -++||-|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~------------G~lGFL~~~~ 67 (246)
T PRK04761 5 PEAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR------------GSVGFLMNEY 67 (246)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC------------CCCCcccCCC
Confidence 4444555556667777 99999999999988776542 23689999973 36788874
Q ss_pred -HHHHHHHHHHH
Q 011084 238 -CKVNSQLISNV 248 (494)
Q Consensus 238 -~~~~~~~I~nl 248 (494)
.+-+.+.+.++
T Consensus 68 ~~~e~~~~l~~~ 79 (246)
T PRK04761 68 SEDDLLERIAAA 79 (246)
T ss_pred CHHHHHHHHHHh
Confidence 23344444444
No 31
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.03 E-value=0.36 Score=48.70 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCC-----CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH--
Q 011084 167 EQVNAALTACKNLNL-----DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK-- 239 (494)
Q Consensus 167 e~~~~~~~~l~~~~I-----d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~-- 239 (494)
+-.+++.+.++.+++ |.+|+||||||+-.|+.... +.+++|+||- . -++||-|..+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN---------~---G~lGFL~~~~~~ 77 (259)
T PRK00561 15 PVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGIN---------T---GHLGFYTSFNET 77 (259)
T ss_pred HHHHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEe---------c---CCCccccccCHH
Confidence 344455556666666 99999999999888776542 3468999997 2 3789988543
Q ss_pred HHHH-HHHHH
Q 011084 240 VNSQ-LISNV 248 (494)
Q Consensus 240 ~~~~-~I~nl 248 (494)
.+-+ .+..+
T Consensus 78 ~~~~~~~~~l 87 (259)
T PRK00561 78 DLDQNFANKL 87 (259)
T ss_pred HHHHHHHHHH
Confidence 3334 44444
No 32
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.81 E-value=0.81 Score=46.31 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHcC-------CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH
Q 011084 166 TEQVNAALTACKNLN-------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~-------Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~ 238 (494)
.+-.+++.+.|++++ .|.+|+||||||+-.|+..... .-.+++++||. . -++||-|..
T Consensus 14 ~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN----------~--G~lGFL~~~ 78 (265)
T PRK04885 14 KRVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVH----------T--GHLGFYTDW 78 (265)
T ss_pred HHHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEe----------C--CCceecccC
Confidence 344555666666654 5899999999998877765431 11368999997 2 478999864
Q ss_pred H--HHHHHHHHHH
Q 011084 239 K--VNSQLISNVC 249 (494)
Q Consensus 239 ~--~~~~~I~nl~ 249 (494)
. -+-+.+.++.
T Consensus 79 ~~~~~~~~l~~i~ 91 (265)
T PRK04885 79 RPFEVDKLVIALA 91 (265)
T ss_pred CHHHHHHHHHHHH
Confidence 3 3455555554
No 33
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.65 E-value=1.1 Score=45.94 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=38.9
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
+.|.+|+||||||+-.|+.... ..+++|+||- . -++||-|.. +-+-+.+.++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN----------~--G~lGFLt~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIH----------A--GHLGFLTDITVDEAEKFFQAFF 118 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEe----------C--CCcccCCcCCHHHHHHHHHHHH
Confidence 6899999999999877766542 2368999996 2 478998874 44556666664
No 34
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=89.48 E-value=14 Score=34.86 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=69.1
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
+||+++.+...|-.+.++.|+-+.++.. +.++. ++.. . .+++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~--g~~l~--------------------------------~~~~---~-~~~~ 42 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQVL--------------------------------LANS---Q-NDAE 42 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHc--CCeEE--------------------------------EEeC---C-CCHH
Confidence 5899998877888899999998887642 11111 0000 0 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHH
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~n 247 (494)
...+.++.+...++|++|+.+.+.+... ..+.+.+. ++++|.+..+.+.. ... .++++|.. +....+...
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~--~ip~v~~~~~~~~~--~~~--~~v~~d~~-~~~~~~~~~ 112 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTAPT---IVKLARKA--GIPVVLVDRDIPDG--DRV--PSVGSDNE-QAGYLAGEH 112 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhc--CCCEEEeccCCCCC--ccc--ceEecCcH-HHHHHHHHH
Confidence 5667777777789999999988776544 22333333 47898877666541 112 46666654 233344444
Q ss_pred HH
Q 011084 248 VC 249 (494)
Q Consensus 248 l~ 249 (494)
+.
T Consensus 113 l~ 114 (264)
T cd01537 113 LA 114 (264)
T ss_pred HH
Confidence 43
No 35
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=87.90 E-value=0.76 Score=47.92 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHH
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~ 243 (494)
.|-++-..+++.+.++++|-+++.|||||.+..+.-. +-++||+|||.=.-|= |-=|-..=...+.
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~--------SgvfA~~P~~aa~ 149 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNY--------SGVFALSPEDAAR 149 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeecccccee--------ccccccChHHHHH
Confidence 3567788899999999999999999999987765332 4479999999544332 2224444455555
Q ss_pred HHHHHHHH
Q 011084 244 LISNVCTD 251 (494)
Q Consensus 244 ~I~nl~~d 251 (494)
+...++..
T Consensus 150 l~~~~lkg 157 (355)
T COG3199 150 LLGAFLKG 157 (355)
T ss_pred HHHHHhcc
Confidence 55555443
No 36
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=87.47 E-value=0.51 Score=47.97 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=41.0
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHHH
Q 011084 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVCT 250 (494)
Q Consensus 174 ~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~~ 250 (494)
......+.|.+|++|||||+..|+.... +.+++|+||+. -+.||-|.. +.+.+++..+..
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~------------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT------------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES------------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC------------CCccccccCCHHHHHHHHHHHhc
Confidence 3456789999999999999999887653 34689999993 245555442 344555555543
No 37
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=87.02 E-value=1.4 Score=46.29 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc--------------CCCCeEEEeeecccC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA--------------KCPTKVVGVPVTLNG 221 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~--------------~~~i~VIgVPkTIDN 221 (494)
+.++.+++++.+++.+.|.+|-|||--+++.|..++-..... +..+++|.||-|--.
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 63 TLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 568899999999999999999999999999999888765421 112799999966553
No 38
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.18 E-value=1.7 Score=44.58 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=40.3
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNVCT 250 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~--~~~~~I~nl~~ 250 (494)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|... -+.+.++++..
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT------------GRLGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec------------CCCCcccccCHHHHHHHHHHHHc
Confidence 6899999999999877766542 23689999972 4789999864 55666666653
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.94 E-value=1.4 Score=44.20 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH--HHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV--NSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~--~~~~I~nl~ 249 (494)
+.|.+|+||||||+-.|+... +++|+||- . -++||-|.... +-+++.++.
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin---------~---G~lGfl~~~~~~~~~~~l~~~~ 92 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFK---------A---GRLGFLSSYTLEEIDRFLEDLK 92 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEe---------C---CCCccccccCHHHHHHHHHHHH
Confidence 669999999999998776543 47999997 1 36899887542 344455543
No 40
>PLN02929 NADH kinase
Probab=85.50 E-value=0.99 Score=46.56 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=38.8
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee---cccCCC-CCCCCC--CCcCchhHHH--HHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV---TLNGDL-KNQFVE--TNVGFDTICK--VNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk---TIDNDl-~~~~ie--~S~GFdTA~~--~~~~~I~nl~ 249 (494)
+.|.+|++|||||+-.|+.... .+++|+||-. +.|.-- ..+.++ .++||=+++. -+-+.++++.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLD------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcC------CCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHH
Confidence 5688999999999988776542 2589999953 222210 001111 3899998854 3334444443
No 41
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.34 E-value=1.7 Score=44.86 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=38.1
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
+.|.+|+||||||+-.|+.... ..+++|+||- . -++||-|.. .-+-+.+.++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN---------~---G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTIN---------T---GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEe---------C---CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999888776543 3468999995 1 488998864 34444555553
No 42
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=85.20 E-value=2.4 Score=43.95 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh--cCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE--AKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~--~~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.... ..-.+++|.||-|
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 46788899999999999999999999999998877654332 1224799999955
No 43
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.12 E-value=1.9 Score=44.33 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=39.3
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|.. +-+.+.+.++.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ------------GHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec------------CCCeEeeccCHHHHHHHHHHHH
Confidence 6899999999999988876643 23689999972 379999874 44555555554
No 44
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=84.72 E-value=3.7 Score=35.60 Aligned_cols=93 Identities=23% Similarity=0.321 Sum_probs=58.2
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
|||.||=|||- =|+..+.+ .+.....+||-+.+ .||+.-++.+. .+ +.
T Consensus 1 MkVLviGsGgR---EHAia~~l----~~s~~v~~v~~aPG-----------------------N~G~~~~~~~~-~~-~~ 48 (100)
T PF02844_consen 1 MKVLVIGSGGR---EHAIAWKL----SQSPSVEEVYVAPG-----------------------NPGTAELGKNV-PI-DI 48 (100)
T ss_dssp EEEEEEESSHH---HHHHHHHH----TTCTTEEEEEEEE-------------------------TTGGGTSEEE--S--T
T ss_pred CEEEEECCCHH---HHHHHHHH----hcCCCCCEEEEeCC-----------------------CHHHHhhceec-CC-CC
Confidence 57888888863 34444444 33444557776653 34544444332 22 45
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+.+.+++.+++++|| |||||-..-+. +=|+++|++.| ++|+|=.
T Consensus 49 ~d~~~l~~~a~~~~id-lvvvGPE~pL~--~Gl~D~l~~~g--i~vfGP~ 93 (100)
T PF02844_consen 49 TDPEELADFAKENKID-LVVVGPEAPLV--AGLADALRAAG--IPVFGPS 93 (100)
T ss_dssp T-HHHHHHHHHHTTES-EEEESSHHHHH--TTHHHHHHHTT---CEES--
T ss_pred CCHHHHHHHHHHcCCC-EEEECChHHHH--HHHHHHHHHCC--CcEECcC
Confidence 6789999999999999 88899888765 34778888877 6777643
No 45
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.17 E-value=2.6 Score=43.25 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~ 239 (494)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~------------G~lGFl~~~~ 105 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR------------GNLGFLTDLD 105 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC------------CCCCcccccC
Confidence 6899999999999888776543 23589999872 3688888755
No 46
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.04 E-value=1.9 Score=44.58 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=39.9
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +.+-+++..+.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL------------GHVGFLAEAEAEDLDEAVERVV 126 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec------------CCCceeccCCHHHHHHHHHHHH
Confidence 6899999999999988876643 23589999982 478998865 45556666665
No 47
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.55 E-value=2 Score=43.69 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=32.7
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH
Q 011084 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (494)
Q Consensus 179 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~ 239 (494)
.+.|.+|++|||||+-.|..+++ .+++|+|||. -+.||-|...
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~~------~~~pi~gIn~------------G~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKTK------KDIPILGINM------------GTLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhcC------CCCeEEEEeC------------CCCCccccCC
Confidence 37899999999999988776432 3689999992 2558877654
No 48
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=83.48 E-value=3.3 Score=43.65 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC--------------CCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK--------------CPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~--------------~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.....+ ..+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 68 TIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 5678999999999999999999999999999887765432111 136999999775
No 49
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=83.46 E-value=2.3 Score=46.76 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
++|.+|+||||||+-.|+.+.. +..++|+||. . -++||-|.. .-+-+.+.++.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~--G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------M--GSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------C--CCcceecccCHHHHHHHHHHHH
Confidence 6899999999999988877643 3458999994 2 489998864 33445555554
No 50
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=83.02 E-value=3.3 Score=43.49 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeeccc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTLN 220 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-------------~~~i~VIgVPkTID 220 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--
T Consensus 65 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~g 133 (370)
T cd08551 65 TLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAG 133 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCc
Confidence 568899999999999999999999999999988887543210 12579999997653
No 51
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=82.79 E-value=2.9 Score=43.48 Aligned_cols=53 Identities=30% Similarity=0.440 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.. ++++|.||-|..++
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 467899999999999999999999999999998887532 57999999776544
No 52
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.59 E-value=40 Score=32.57 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=60.9
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
.|||++..-..|-...++.|+-+.++....+..++ +..+. .+++
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~---------------------------------~~~~~---~~~~ 44 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT---------------------------------VVSAD---YDLN 44 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE---------------------------------EccCC---CCHH
Confidence 47888887778888888888888876432121211 11111 1344
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.....++.+...++|++++.+.+... ....+ +.+.+.+ ++||.+-. +..... .++|+|.
T Consensus 45 ~~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i-~~~~~~~--ipvv~~~~----~~~~~~--~~V~~d~ 103 (271)
T cd06321 45 KQVSQIDNFIAAKVDLILLNAVDSKG-IAPAV-KRAQAAG--IVVVAVDV----AAEGAD--ATVTTDN 103 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCChhH-hHHHH-HHHHHCC--CeEEEecC----CCCCcc--ceeeech
Confidence 55677788889999999998765431 12233 3344444 68887733 222222 4677764
No 53
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.85 E-value=3.6 Score=42.95 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDN 221 (494)
.+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+ .+++|.||-|--.
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gt 112 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAAT 112 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCcccc
Confidence 5678999999999999999999999999999998887643 4799999977643
No 54
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=81.66 E-value=3.5 Score=43.14 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
.+.+..+++++.+++.+.|.+|-|||--.++.|..+| +. + ++++|.||-|.-.|
T Consensus 71 ~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~~--r--gip~I~IPTT~~td 124 (350)
T PRK00843 71 ATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-YR--L--GIPFISVPTAASHD 124 (350)
T ss_pred CCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEeCCCccCC
Confidence 3578899999999999999999999998888888887 32 2 47999999886433
No 55
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.34 E-value=3.3 Score=41.95 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcC---------CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhH
Q 011084 167 EQVNAALTACKNLN---------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (494)
Q Consensus 167 e~~~~~~~~l~~~~---------Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA 237 (494)
+-.+++.+.|++++ .|.+|++|||||+-.|+..... . .+++|+||.. . -++||-|.
T Consensus 17 ~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~---------~--G~lGFL~~ 81 (264)
T PRK03501 17 EKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST---------K--DQLGFYCD 81 (264)
T ss_pred HHHHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec---------C--CCCeEccc
Confidence 34455555565543 5799999999999887765421 1 1468889863 1 37889775
Q ss_pred HH--HHHHHHHHHH
Q 011084 238 CK--VNSQLISNVC 249 (494)
Q Consensus 238 ~~--~~~~~I~nl~ 249 (494)
.. -+-+.+.++.
T Consensus 82 ~~~~~~~~~l~~i~ 95 (264)
T PRK03501 82 FHIDDLDKMIQAIT 95 (264)
T ss_pred CCHHHHHHHHHHHH
Confidence 33 3444444443
No 56
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=80.82 E-value=4.3 Score=43.35 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-------------~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-..... ...+++|.||-|
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 457899999999999999999999999999997765432111 113688888843
No 57
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=80.77 E-value=4.9 Score=42.56 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc--------------CCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA--------------KCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~--------------~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... ...+++|.||-|
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 568899999999999999999999999999988776533211 124688999844
No 58
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=80.43 E-value=3.6 Score=42.93 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778999999999999999999999999999888753 257999999663
No 59
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=80.16 E-value=4.4 Score=41.76 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+. + .+++|.||-|.-.+
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tg 117 (332)
T cd07766 63 TFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATG 117 (332)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchh
Confidence 5788999999999999999999999999999888876432 2 47999999555443
No 60
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=80.08 E-value=4.8 Score=42.44 Aligned_cols=55 Identities=27% Similarity=0.265 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------------~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+.. ....+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 68 PEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 56889999999999999999999999999998777653311 01257999999663
No 61
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=80.01 E-value=5 Score=42.36 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 66 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~ 102 (375)
T cd08179 66 SVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWI 102 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 5688999999999999999999999999999987763
No 62
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=79.34 E-value=5.2 Score=42.32 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc---------------CCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---------------KCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~---------------~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-..... ...+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 468899999999999999999999999999887665322111 124789999965
No 63
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=79.30 E-value=5 Score=42.37 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh------------------cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE------------------AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~------------------~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.... .+..+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 46788999999999999999999999999998777643210 01247899999664
No 64
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=79.25 E-value=5.7 Score=42.15 Aligned_cols=55 Identities=29% Similarity=0.263 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH----------HHHh---cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE----------TFAE---AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae----------~~~~---~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++- ++.. ....+++|.||-|=
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 4688999999999999999999999999999987764 2110 12247899999443
No 65
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.10 E-value=4.3 Score=41.76 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=39.3
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +-+.+++..+.
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~------------G~lGFl~~~~~~~~~~~l~~~~ 116 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR------------GRLGFLTDIRPDELEFKLAEVL 116 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC------------CcccccccCCHHHHHHHHHHHH
Confidence 6899999999999888765432 34689999983 368998864 44566666665
No 66
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=79.02 E-value=4.7 Score=41.89 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++ +. + ++++|.||-|.-+|-.
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a-~~--~--~~p~i~iPTT~~t~s~ 117 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAA-YK--L--GIPFISVPTAASHDGI 117 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEecCcccCCcc
Confidence 568889999999999999999999999999888887 33 2 4799999988765543
No 67
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.86 E-value=7.1 Score=43.77 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=37.2
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH--HHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNV 248 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~--~~~~~I~nl 248 (494)
++|.+|+||||||+-.|+.... ..+++|+||- . -++||-|... -+-+.+.++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin----------~--G~lGFL~~~~~~~~~~~l~~~ 401 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICIN----------M--GTVGFLTEFSKEEIFKAIDSI 401 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------C--CCCCcCcccCHHHHHHHHHHH
Confidence 4689999999999988776542 3368999996 2 4899988753 334444444
No 68
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=78.79 E-value=5.7 Score=42.31 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~La 200 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 63 SLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467899999999999999999999999999988776
No 69
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=78.51 E-value=5.7 Score=41.93 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------------~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.... ....+++|.||-|-
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 70 TITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 46789999999999999999999999999998877642111 12347899999443
No 70
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.49 E-value=2.4 Score=43.14 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~ 239 (494)
+.|.+|+||||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~------------G~lGFL~~~~ 84 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR------------GNLGFLTDID 84 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC------------CCCcccccCC
Confidence 6899999999999988876542 23689999961 4789988643
No 71
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=78.47 E-value=6.2 Score=41.39 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh------------cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE------------AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~------------~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.... ....+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 56889999999999999999999999999998877642210 11247899999553
No 72
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=78.31 E-value=5.8 Score=41.69 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-----------------cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-----------------AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-----------------~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.+.. ....+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 46789999999999999999999999999998887754211 01247899999553
No 73
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=78.27 E-value=5.9 Score=41.80 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH----------HHh---cCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET----------FAE---AKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~----------~~~---~~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-. +.. ....+++|.||-|
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 46789999999999999999999999999998877621 111 1224799999966
No 74
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=77.95 E-value=10 Score=33.50 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=60.3
Q ss_pred CCCEEEEEccchhhhhcCCeee-cCHhHHhcccccCCcccccccCCCCC-ChHHHHHHHHHHHHcCCCEEEEecCcchHH
Q 011084 117 PKSTLLGFLGGSEGLFAQKTLE-VTKEILSTYKNQGGYDMLGRTKDQIR-TTEQVNAALTACKNLNLDGLVIIGGVTSNT 194 (494)
Q Consensus 117 ~~~~v~Gf~~G~~GL~~~~~ie-Lt~~~v~~~~n~GG~~~lgS~R~k~~-~~e~~~~~~~~l~~~~Id~LviIGGd~S~~ 194 (494)
++.++++-.+|..--++ ++. +...++..|..-|-. +|.|+..-.. +++.+.+.++.|.+.++-||++--|..--.
T Consensus 10 ~~~~lvaG~~gL~r~V~--~v~v~e~~d~~~~l~~gEl-vlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~ 86 (123)
T PF07905_consen 10 KDAKLVAGENGLDRPVR--WVHVMEAPDPSDWLRGGEL-VLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDE 86 (123)
T ss_pred CCCEEecCCccCCCcEE--EEEEeecCCHHHhCCCCeE-EEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCcccc
Confidence 34566655444322222 222 223467788776666 7777665444 456699999999999999999955532223
Q ss_pred HHHHHHHHHHhcCCCCeEEEeee
Q 011084 195 DAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 195 ~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
--..+-+++.+.+ ++++.+|.
T Consensus 87 iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 87 IPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred CCHHHHHHHHHcC--CCEEEeCC
Confidence 3344555665555 79999995
No 75
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=77.54 E-value=5.5 Score=41.48 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+. |.+|.|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--~~p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYM-R--GIRFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHc-c--CCCEEEecCch
Confidence 56889999999999998 89999999999998888774322 3 47999999876
No 76
>PRK15138 aldehyde reductase; Provisional
Probab=76.58 E-value=7 Score=41.60 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 4678999999999999999999999999999887764
No 77
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=76.47 E-value=7.7 Score=40.75 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~---~Id~LviIGGd~S~~~A~~Lae~~~~~-------------~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++. +.|.+|-|||--+++.|..++-..... +..+++|.||-|-
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 568899999999998 999999999999999998776433211 1135789999553
No 78
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=76.07 E-value=6.2 Score=41.17 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.++ |.+|-|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTT~ 121 (345)
T cd08195 67 SLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYM-R--GIDFIQIPTTL 121 (345)
T ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHh-c--CCCeEEcchhH
Confidence 56889999999999999 99999999999988888875332 3 47999999776
No 79
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=76.02 E-value=6 Score=41.28 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+..++.+.|.+|-|||--+++.|..++-.+ .+++|.||-|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~-----~~p~i~VPTt~ 112 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL-----GKPVFTFPTIA 112 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc-----CCCEEEecCcc
Confidence 567888999999999999999999999999998887542 47999999764
No 80
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=75.32 E-value=7.6 Score=40.99 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHH----------hc-------CCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA----------EA-------KCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~----------~~-------~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+. .. +..+++|.||-|
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 3578899999999999999999999999999877764321 11 124789999955
No 81
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=75.03 E-value=6.4 Score=41.41 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-. .++++|.||-|
T Consensus 69 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTt 117 (366)
T PRK09423 69 SDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTI 117 (366)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCc
Confidence 34678899999999999999999999999988888743 24799999976
No 82
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=74.04 E-value=7.3 Score=40.89 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+. |.+|.|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 74 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--gip~i~IPTT~ 128 (358)
T PRK00002 74 SLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYM-R--GIRFIQVPTTL 128 (358)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhc-C--CCCEEEcCchh
Confidence 56889999999999988 99999999999988887774221 3 47999999886
No 83
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=73.66 E-value=9.4 Score=40.44 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh---------------cCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE---------------AKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~---------------~~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.... ....+++|.||-|
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 35788899999999999999999999999998766532211 0124789999955
No 84
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=72.75 E-value=10 Score=39.84 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-----------------CCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-----------------KCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-----------------~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-..... .-.+++|.||-|-
T Consensus 66 ~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 137 (370)
T cd08192 66 TEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTA 137 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCC
Confidence 567899999999999999999999999999887776543210 1137899999554
No 85
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=71.62 E-value=12 Score=39.31 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCcchHHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLN--LDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~--Id~LviIGGd~S~~~A~~Lae 201 (494)
+.+..+++.+.+++.+ .|.+|-|||--.++.|..++-
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~ 101 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV 101 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence 4577889999999988 999999999999998876654
No 86
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=71.54 E-value=53 Score=31.52 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=93.8
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
|||+......|--..+..|+-++++... .++.-+ +.+. .+.+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g--~~~~~~--------------------------------~~~~---~d~~~ 43 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELG--YEVEIV--------------------------------FDAQ---NDPEE 43 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHT--CEEEEE--------------------------------EEST---TTHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcC--CEEEEe--------------------------------CCCC---CCHHH
Confidence 6788888888866668888888776542 222211 0000 13456
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC-CCCCCCCCCcCchhHHHHHHHHHHH
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQLISN 247 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND-l~~~~ie~S~GFdTA~~~~~~~I~n 247 (494)
..+.++++.+.++|++++..-+.+... ..| +.+.+.| |+||. +|+| .+......++|+|.. .....+.+.
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~-~~l-~~~~~~g--Ipvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~ 114 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA-PFL-EKAKAAG--IPVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEY 114 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH-HHH-HHHHHTT--SEEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH-HHH-HHHhhcC--ceEEE----EeccccccccceeeeeccHH-HHHHHHHHH
Confidence 678888899999999998888775433 333 4455555 68886 6777 444444478888743 333333333
Q ss_pred HHHHHhhccCceEEE-EecCCCccHHH---HHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHH
Q 011084 248 VCTDALSAEKYYYFI-RLMGRRASHVA---LECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAV 309 (494)
Q Consensus 248 l~~da~S~~k~~~~V-evMGR~ag~lA---l~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i 309 (494)
+. +....+..+.++ ...+-.....- ...+|...+++-+++|.. ..+.+..+..+.+.+.+
T Consensus 115 l~-~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~l 178 (257)
T PF13407_consen 115 LA-EKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYPGVEIVDEYE-YTDWDPEDARQAIENLL 178 (257)
T ss_dssp HH-HHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCTTEEEEEEEE-ECTTSHHHHHHHHHHHH
T ss_pred HH-HHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcceeeeeeeee-ccCCCHHHHHHHHHHhh
Confidence 33 332222223333 22221111111 233455567888888532 22245444444444444
No 87
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=71.54 E-value=9.8 Score=39.71 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++.. . .+++|.||-|--.+
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~---~--~~p~i~VPTtagtg 114 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR---L--DKPIVIVPTIASTC 114 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH---c--CCCEEEeCCccccC
Confidence 46788999999999999999999999999999888743 2 47999999764333
No 88
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=71.18 E-value=11 Score=39.76 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~ 239 (494)
+.+..+++.+.+.+.+. |.+|.|||--+.+.|..+|-.+. +| ++.+.||.|.-- .++.++|--|+++
T Consensus 58 ~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~-rg--i~~i~iPTTlla-----~vds~ig~k~~vn 127 (346)
T cd08196 58 SLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYM-RG--VSWSFVPTTLLA-----QVDSCIGSKSSIN 127 (346)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHH-cC--CCeEEecccHHH-----hhhccccccceec
Confidence 56889999999999999 89999999988888888775332 44 689999987531 1225666666555
No 89
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=71.11 E-value=10 Score=39.89 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHcCC----CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 164 RTTEQVNAALTACKNLNL----DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~I----d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
++.+..+++.+.+.+.+. |.+|-|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 68 ~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~-r--g~p~i~VPTT~ 124 (354)
T cd08199 68 KTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYR-R--GTPYVRIPTTL 124 (354)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhc-C--CCCEEEEcCcc
Confidence 356889999999999999 99999999988888888875332 3 47999999886
No 90
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=70.96 E-value=23 Score=38.24 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=86.9
Q ss_pred CChHHHhhhCCCccCCCceeEecCcc--CCCccccccCCCceEEEEEecCCCCCCcch-hH-------HHHHHH--HHhh
Q 011084 48 ADTHSISRSFPHTYGQPLAHFLRATA--KVPDAQIITEHPAIRVGIVFCGRQSPGGHN-VV-------WGLYDA--LKLH 115 (494)
Q Consensus 48 ~~~~~i~~~fp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~-vI-------~gl~~~--~~~~ 115 (494)
.....+..|...+.|.|..+-.+-.. .++-.....+-+..||++|||||..|=.|. -| +|.++- +..
T Consensus 183 ~a~Rav~mllkkl~ge~f~te~pmP~fd~v~p~p~~kdL~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~- 261 (431)
T TIGR01918 183 GSERAVDMLVKKLKGEEFQTEYPMPVFDRVEPAAAIKDLSKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDR- 261 (431)
T ss_pred cHHHHHHHHHHhccCCcccccCCCCCCCcCCCCccCCchhhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccc-
Confidence 44566666666666665554433210 000000112234579999999999998874 33 121110 000
Q ss_pred CCCCEEEEEccchhhhhcC----CeeecCHh----------HHhc-ccccCCcccccccCCCCCChHHHHHHHHHHHHcC
Q 011084 116 NPKSTLLGFLGGSEGLFAQ----KTLEVTKE----------ILST-YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180 (494)
Q Consensus 116 ~~~~~v~Gf~~G~~GL~~~----~~ieLt~~----------~v~~-~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~ 180 (494)
-...+..-.++||+--.-+ .++.|+.- .+.. |..+-|. |+.+... .+.-..+++.|++-+
T Consensus 262 l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~LreLekEG~IG~L~~~fyst~G~---gt~~~~a--~~~g~eIa~~Lk~dg 336 (431)
T TIGR01918 262 LEGGVYETAHGGFDPAYANADPDRVVPVDVLRDYEKEGKIGELHEYFYSTVGN---GTTVAES--KQFAKEFVVELKQGG 336 (431)
T ss_pred cCccceEEeccccChHHHhcCCCeeeeHHHHHHHHHcCCcccccCeeEEcCCC---CchHHHH--HHHHHHHHHHHHHcC
Confidence 0123344556666554421 24444421 1111 2233332 2333221 345678999999999
Q ss_pred CCEEEEecCcchHHH-HHHHHHHHHhcCCCCeEEEe
Q 011084 181 LDGLVIIGGVTSNTD-AAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 181 Id~LviIGGd~S~~~-A~~Lae~~~~~~~~i~VIgV 215 (494)
+|+.|....-|+-+. .+.++.++++.|+ +||.+
T Consensus 337 VDAVILTstCgtC~r~~a~m~keiE~~Gi--Pvv~~ 370 (431)
T TIGR01918 337 VDAVILTSTUGTCTRCGATMVKEIERAGI--PVVHM 370 (431)
T ss_pred CCEEEEcCCCCcchhHHHHHHHHHHHcCC--CEEEE
Confidence 999999999888554 5677888888775 55544
No 91
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=70.85 E-value=12 Score=39.63 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeec
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVT 218 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------------~~~~i~VIgVPkT 218 (494)
.++..++++.+++.+.|.+|-|||--.++.|..++-.+.. .+-.+++|.||-|
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 65 RSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 4557777888999999999999999999999888753321 0114799999966
No 92
>PRK11914 diacylglycerol kinase; Reviewed
Probab=70.65 E-value=13 Score=37.80 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+..+.++.+.+.+.|.+|++|||||...+.. .+. +.++++--+|.==-||+. .++|..+
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA-----r~lg~~~ 110 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA-----REFGIPT 110 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH-----HHcCCCC
Confidence 345556666666778899999999999876542 222 335788889988889887 5777754
No 93
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=70.34 E-value=12 Score=39.63 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------------~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|++|-|||--.++.|..++-.... ....+++|.||-|-
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 45788999999999999999999999888888776543211 01247999999654
No 94
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=70.26 E-value=9.1 Score=39.87 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
.+.+..+++++.+++ +.|.+|-|||--.++.|..++. . . .+++|.||-|
T Consensus 65 pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~-~--~--~~p~i~IPTT 113 (348)
T cd08175 65 ADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSY-K--T--GIPYISVPTA 113 (348)
T ss_pred CCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHH-h--c--CCCEEEecCc
Confidence 467888899998888 9999999999998988888873 2 2 4799999988
No 95
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=69.77 E-value=11 Score=39.01 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
+.+..+++++.+++ +.|.+|-|||--.++.|..+| ++ + ++++|.||-|.-+|
T Consensus 66 ~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~--gip~I~VPTT~~~~ 117 (332)
T cd08549 66 DEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--V--GKPFISVPTAPSMD 117 (332)
T ss_pred CHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--c--CCCEEEeCCCcccC
Confidence 56788899999988 999999999998888888887 43 2 47999999888554
No 96
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=69.75 E-value=11 Score=39.78 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.++| .+|-|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~-r--gip~I~IPTTl 120 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLF-R--GIRLVHIPTTL 120 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCCEEEecCcc
Confidence 567899999999999999 9999999888888877764321 2 47999999774
No 97
>PLN02727 NAD kinase
Probab=69.74 E-value=5.6 Score=46.70 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=40.1
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
++|.+|+||||||+-.|+.+.. +..++|+||- . -++||-|-. .-+.+.+.++.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGIN----------l--GrLGFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFN----------L--GSLGFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEe----------C--CCccccccCCHHHHHHHHHHHH
Confidence 6899999999999988877653 3458999997 2 489998864 44556666665
No 98
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=69.63 E-value=13 Score=39.71 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------------~~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-+||--+++.|..++-.... ...+.++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC
Confidence 46789999999999999999999999999888766543321 1122677888844
No 99
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=69.60 E-value=5.3 Score=40.97 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=38.0
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~ 249 (494)
+.|.+|++|||||+-.|..... +.+++++||- . -++||-|.. +-+-+.++.+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn---------~---G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN---------H---GRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc---------C---CCccccccCCHHHHHHHHHHHH
Confidence 5799999999999988876542 3468999997 2 478998863 33445555553
No 100
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=69.46 E-value=13 Score=39.99 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~La 200 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467899999999999999999999999999987665
No 101
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=69.39 E-value=9.2 Score=38.57 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=31.0
Q ss_pred HHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEE-eeecccCCCC
Q 011084 175 ACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVG-VPVTLNGDLK 224 (494)
Q Consensus 175 ~l~~~~Id~LviIGGd~S~~~A~-~Lae~~~~~~~~i~VIg-VPkTIDNDl~ 224 (494)
...+.+.|.+|++|||||...+. .|.+ .. +.+.+| +|.==-||+.
T Consensus 52 ~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 52 EARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 34456789999999999988755 3432 12 234566 9977777775
No 102
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=68.94 E-value=4.5 Score=44.25 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=77.4
Q ss_pred CCeeecCHh---HHhcccccCCcccccccC--CCCCChHHHHHH-HHHHHHcCCCEEEEecCcchHHHHH--HHHHHHHh
Q 011084 134 QKTLEVTKE---ILSTYKNQGGYDMLGRTK--DQIRTTEQVNAA-LTACKNLNLDGLVIIGGVTSNTDAA--YLAETFAE 205 (494)
Q Consensus 134 ~~~ieLt~~---~v~~~~n~GG~~~lgS~R--~k~~~~e~~~~~-~~~l~~~~Id~LviIGGd~S~~~A~--~Lae~~~~ 205 (494)
++|++|.+. .++.+++.|-. ++..- ..+ +.++++.. .+.+.++ +||++|-||.|.--..- .-++|+++
T Consensus 295 GKYv~l~DaY~Sv~EAL~hag~~--~~~~v~i~wI-dse~le~~~~~~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yARE 370 (533)
T COG0504 295 GKYVELPDAYKSVIEALKHAGIA--LGVKVNIKWI-DSEDLEEENAAELEKL-VDGILVPGGFGYRGVEGKIAAIRYARE 370 (533)
T ss_pred ECCcCchhHHHHHHHHHHhhhhh--cCCceeeEEE-ccccccccchhhhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHh
Confidence 478888865 35555555442 22211 112 23333321 2234444 99999999999633333 33466666
Q ss_pred cCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhcc----CceEEEEecCCCccHHHHHhhhhcC
Q 011084 206 AKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE----KYYYFIRLMGRRASHVALECTLQSH 281 (494)
Q Consensus 206 ~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~----k~~~~VevMGR~ag~lAl~~aLat~ 281 (494)
++ ++..| .|+|++.|+=.++.-+-.+ .+|.|.. --.-||.+|....+---+...+..+
T Consensus 371 n~--iP~lG---------------IClGmQ~aviE~ARnv~Gl-~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG 432 (533)
T COG0504 371 NN--IPFLG---------------ICLGMQLAVIEFARNVLGL-EGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLG 432 (533)
T ss_pred cC--CCEEE---------------EchhHHHHHHHHHHHhcCC-ccCcccccCCCCCCceEEeccccccCCcCCceeecc
Confidence 65 57776 4999999999999988777 4888853 1135777776655443334444444
Q ss_pred CcEEEe
Q 011084 282 PNMVIL 287 (494)
Q Consensus 282 p~~ilI 287 (494)
+--|.+
T Consensus 433 ~y~~~l 438 (533)
T COG0504 433 AYPCRL 438 (533)
T ss_pred ceeeec
Confidence 433433
No 103
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=68.93 E-value=14 Score=38.98 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------cCC------CCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------AKC------PTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------~~~------~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.... .+. .+++|.||-|-
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 46778889999999999999999999999998655432210 011 36899999654
No 104
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.54 E-value=9.5 Score=38.78 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=35.0
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH--HHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~--~~~~~I~nl~ 249 (494)
+.|.+|++|||||+-.|+... ..+|+||-. -++||-|... -+-+++..+.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 103 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM------------GGLGFLTEIEIDEVGSAIKKLI 103 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC------------CCCccCcccCHHHHHHHHHHHH
Confidence 789999999999987766532 248999852 3789988633 3444555554
No 105
>PRK06186 hypothetical protein; Validated
Probab=68.11 E-value=6.6 Score=39.00 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=44.1
Q ss_pred CCCEEEEecCcch--HHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhc
Q 011084 180 NLDGLVIIGGVTS--NTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSA 255 (494)
Q Consensus 180 ~Id~LviIGGd~S--~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~ 255 (494)
+.||++|.||.|. ..+.-...+|+++++ +|+.| .|.|++.|+=.++.-+-.+ .||.|.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LG---------------IClGmQ~avIe~arnv~g~-~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLG---------------TCGGFQHALLEYARNVLGW-ADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEe---------------echhhHHHHHHHHhhhcCC-cCCCcC
Confidence 7799999999998 344556678887776 57776 4999999887777765555 588875
No 106
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=67.64 E-value=14 Score=37.62 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=43.7
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhh
Q 011084 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALS 254 (494)
Q Consensus 179 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S 254 (494)
...+.++++||||++-.|+.... ..+++|+||= + -++||-|-.+ .+.+..+..+...
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin---------~---G~lGFLt~~~--~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN---------L---GHLGFLTDFE--PDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe---------C---CCcccccccC--HHHHHHHHHHHhc
Confidence 57899999999999988887653 3358999985 2 4899999887 5666666656555
No 107
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=66.98 E-value=6.9 Score=43.08 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=73.3
Q ss_pred CEEEEEccchhhhhcCCeeecCHhHHhccccc--CCcccccccCCCCCChHHHHHHHHHHHHcCC---CEEEEecCcchH
Q 011084 119 STLLGFLGGSEGLFAQKTLEVTKEILSTYKNQ--GGYDMLGRTKDQIRTTEQVNAALTACKNLNL---DGLVIIGGVTSN 193 (494)
Q Consensus 119 ~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~--GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~I---d~LviIGGd~S~ 193 (494)
..|+-..++..+. .++.+.++++.|..+... .-..+.=..-..-++-+..+++++.+.+.++ |.+|.|||--..
T Consensus 172 ~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~ 250 (488)
T PRK13951 172 HLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALT 250 (488)
T ss_pred eeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHH
Confidence 3455444444444 346566676655442211 0011111111233467899999999999999 999999999888
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 194 TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 194 ~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
+.|..+|--+. +| |+.|-||-|+--= +|.|+|--|++++
T Consensus 251 D~agf~A~~y~-RG--i~~i~vPTTlla~-----vDssiggK~~vn~ 289 (488)
T PRK13951 251 DFTGFVASTFK-RG--VGLSFYPTTLLAQ-----VDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHh-cC--CCeEecCccHHHH-----HhcCCCCCeeeeC
Confidence 88887776443 34 8999999998643 3478888777765
No 108
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=66.62 E-value=31 Score=37.29 Aligned_cols=160 Identities=15% Similarity=0.223 Sum_probs=85.2
Q ss_pred CChHHHhhhCCCccCCCceeEecCcc--CCCccccccCCCceEEEEEecCCCCCCcchh-H-------HHHHHH--HHhh
Q 011084 48 ADTHSISRSFPHTYGQPLAHFLRATA--KVPDAQIITEHPAIRVGIVFCGRQSPGGHNV-V-------WGLYDA--LKLH 115 (494)
Q Consensus 48 ~~~~~i~~~fp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~v-I-------~gl~~~--~~~~ 115 (494)
.....+..+...+.|.|..+-++-.. .+|-.-...+-+..||+++||||..|=+|-= | +|.++- .. .
T Consensus 183 ~a~Rav~ml~kkl~ge~f~te~p~P~~d~V~p~p~~kdL~~akIALvTsgGivPkgnPd~i~s~~A~~yg~Y~i~~~~-~ 261 (431)
T TIGR01917 183 GAKRAVAMLVKKLKGEEFETEYPMPVFDNVAPGPAIKDISKAKIAIVTSGGIVPKGNPDHIESSSASKYGKYDIDGFD-D 261 (431)
T ss_pred hHHHHHHHHHHhccCCccccCCCCCCCCCCCCcccCCchhhCEEEEEecCCcccCCCCCccccccCCCceEEeCCccC-c
Confidence 44456666666666655444333210 0000001222345799999999999877652 2 111110 00 0
Q ss_pred CCCCEEEEEccchhhhhcC----CeeecCHh----------HHhc-ccccCCcccccccCCCCCChHHHHHHHHHHHHcC
Q 011084 116 NPKSTLLGFLGGSEGLFAQ----KTLEVTKE----------ILST-YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180 (494)
Q Consensus 116 ~~~~~v~Gf~~G~~GL~~~----~~ieLt~~----------~v~~-~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~ 180 (494)
-...+..-.|+||+--.-+ .++.|+.- .+.. |..+-|. |+.+... ...-+.+++.|++-+
T Consensus 262 l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~LreLe~EG~IG~l~~~fy~t~G~---gt~~~~a--~~~g~eIa~~Lk~dg 336 (431)
T TIGR01917 262 LSEADHETAHGGHDPTYANEDADRVIPVDVLRDLEKEGKIGELFKYFYSTTGN---GTAVANS--KQFAKEFSKELLAAG 336 (431)
T ss_pred CCccceEEeccccChHHHhcCCCeeeeHHHHHHHHHcCCcccccCeeEEccCC---CccHHHH--HHHHHHHHHHHHHcC
Confidence 0123444556676654422 24444421 1111 2233332 2333222 234567999999999
Q ss_pred CCEEEEecCcchHHH-HHHHHHHHHhcCCCCeEEEe
Q 011084 181 LDGLVIIGGVTSNTD-AAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 181 Id~LviIGGd~S~~~-A~~Lae~~~~~~~~i~VIgV 215 (494)
+|+.|..-.-|+-+. ++.++.++++.|+ +||.+
T Consensus 337 VDAvILtstCgtCtrcga~m~keiE~~GI--PvV~i 370 (431)
T TIGR01917 337 VDAVILTSTUGTCTRCGATMVKEIERAGI--PVVHI 370 (431)
T ss_pred CCEEEEcCCCCcchhHHHHHHHHHHHcCC--CEEEE
Confidence 999999988888554 5677888888775 55443
No 109
>PLN02834 3-dehydroquinate synthase
Probab=66.08 E-value=14 Score=40.01 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 164 RTTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
++.+.++++++.+.++++| .+|.|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 144 ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~-r--giplI~VPTTl 199 (433)
T PLN02834 144 KDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQ-R--GVNFVQIPTTV 199 (433)
T ss_pred CCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhc-C--CCCEEEECCcC
Confidence 3578899999999999998 9999999988888877764332 3 47999999884
No 110
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=65.88 E-value=15 Score=38.37 Aligned_cols=52 Identities=29% Similarity=0.383 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~---Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++++ .|.+|.|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 65 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTTl 119 (344)
T cd08169 65 TFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTLF-R--GIAFIRVPTTL 119 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCcEEEecCCc
Confidence 5678899999999887 899999999988888887775432 3 47999999884
No 111
>PRK13054 lipid kinase; Reviewed
Probab=65.77 E-value=15 Score=37.46 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~-~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.++.....+.|.+|++|||||...+. .|.+. ..+.++++--+|.==-||+. .++|-..
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa-----r~lgi~~ 106 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA-----TAAGIPL 106 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH-----HhcCCCC
Confidence 3444444456789999999999987754 33321 01334678889988888886 4566543
No 112
>PRK07360 FO synthase subunit 2; Reviewed
Probab=65.53 E-value=1.7e+02 Score=30.93 Aligned_cols=195 Identities=17% Similarity=0.170 Sum_probs=95.2
Q ss_pred CceEEEEEecCCCCCCcc--hhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCC-
Q 011084 85 PAIRVGIVFCGRQSPGGH--NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD- 161 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n--~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~- 161 (494)
...++.++ ||.-|-.. .-+..+++.+++..++..+.++-.----.+....=.++.+.+..++.-|=..+.+++..
T Consensus 107 G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~ 184 (371)
T PRK07360 107 GATEVCIQ--GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEI 184 (371)
T ss_pred CCCEEEEc--cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhh
Confidence 34677776 55555443 34677888887665666776641100000000011233444555554443223344321
Q ss_pred -----------CCCChHHHHHHHHHHHHcCC--CEEEEecCcchHHHHHHHHHHHHhcCCCC-e-EEEeeecccCCCCCC
Q 011084 162 -----------QIRTTEQVNAALTACKNLNL--DGLVIIGGVTSNTDAAYLAETFAEAKCPT-K-VVGVPVTLNGDLKNQ 226 (494)
Q Consensus 162 -----------k~~~~e~~~~~~~~l~~~~I--d~LviIGGd~S~~~A~~Lae~~~~~~~~i-~-VIgVPkTIDNDl~~~ 226 (494)
...+.+.+-+++++++++|+ ..=+++|=..|...-......+++.+.+. . ...||-.+-+ ++|
T Consensus 185 l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~--~~T 262 (371)
T PRK07360 185 LVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLPFVH--ENA 262 (371)
T ss_pred ccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeccccC--CCC
Confidence 11255677899999999998 55566665567666555555555433211 0 1225533333 233
Q ss_pred CCCC-------CcCchhHHHHHHHHHHHHHHHHhh--ccCceEEEEecCCCccHHHHHhhhhcCCcEE---EeCCcchh
Q 011084 227 FVET-------NVGFDTICKVNSQLISNVCTDALS--AEKYYYFIRLMGRRASHVALECTLQSHPNMV---ILGEEVAA 293 (494)
Q Consensus 227 ~ie~-------S~GFdTA~~~~~~~I~nl~~da~S--~~k~~~~VevMGR~ag~lAl~~aLat~p~~i---lIpEe~~~ 293 (494)
..+. +.+.+. +++++- -+|..+-.. -+-+|. ++| -.....+|..|||.+ ++||.+..
T Consensus 263 pl~~~~~~~~~~~~~~~-lr~iAi--~Rl~lp~~~~~i~a~~~---~lg----~~~~~~~l~~Gan~~~~~~~~~~v~~ 331 (371)
T PRK07360 263 PLYERGRVKGGAPGLED-LLLYAV--SRIFLGNWIKNIQASWV---KLG----LKLAQVALNCGANDLGGTLMEEHITK 331 (371)
T ss_pred ccccccccCCCCCHHHH-HHHHHH--HHHhcCCCCCCeeccce---eeC----HHHHHHHHhcCCccCcCcCcccceec
Confidence 3221 123333 554443 233322210 111221 222 122356788899999 98888653
No 113
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=65.42 E-value=1.4e+02 Score=31.01 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=91.4
Q ss_pred EEEecCCCCCCc-chhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC-hH
Q 011084 90 GIVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT-TE 167 (494)
Q Consensus 90 gIl~sGG~aPG~-n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~-~e 167 (494)
-|++|||+.==. ..-+..+++++++. +..+.+.+ |.+..+.+- .-+|++.++.++..|=...++.--..+.. .+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i-~~v~~iri--~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~ 214 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAI-DHVKIVRF--HTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTA 214 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhC-CCccEEEE--eCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCH
Confidence 588999976544 35788888888753 23333333 233322211 33578878877777622234332222211 35
Q ss_pred HHHHHHHHHHHcCCCEEE---Ee-cCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHH
Q 011084 168 QVNAALTACKNLNLDGLV---II-GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~Lv---iI-GGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~ 243 (494)
+..++++.|++.||.-++ ++ |=|++......|.+.+.+.|...-.+....-.. ++ --|.+....+.+
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~----g~-----~~f~~~~~~~~~ 285 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAP----GT-----AHFRVTIEEGQA 285 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCC----Cc-----ccccCcHHHHHH
Confidence 677889999999997643 44 556666677778887777775322223222121 11 223455555566
Q ss_pred HHHHHHHHHhhccCceEEEEecCCC
Q 011084 244 LISNVCTDALSAEKYYYFIRLMGRR 268 (494)
Q Consensus 244 ~I~nl~~da~S~~k~~~~VevMGR~ 268 (494)
.+..+..-....-.--+++++.|..
T Consensus 286 i~~~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 286 LVRALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHHHHhCCCCcceeEEEeCCCCC
Confidence 6666643332222212577777754
No 114
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=65.22 E-value=13 Score=39.28 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN 225 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~ 225 (494)
+.+..+++...+.+.+.|.++=|||--+.+.|..+|..+ ++++|.||-+-.+|=..
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~-----~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRL-----GLPFISVPTIASTDAIT 124 (360)
T ss_pred CHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHc-----CCCEEEecCcccccccc
Confidence 567888999988889999999999999999999888642 57999999998888753
No 115
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=64.69 E-value=1.4e+02 Score=28.74 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=65.8
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
+||++...-.-|=...++.|+-+++++. +.++. +..+. .+++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLR---------------------------------VYDAG---GDDA 42 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 4788887666666666777777766532 22221 11111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHH
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~n 247 (494)
...+.++.+...++|++|+..++.... ...+ +.+.+.+ ++||.+ |++.....+ .+++.|-- +....+...
T Consensus 43 ~~~~~l~~~~~~~vdgii~~~~~~~~~-~~~i-~~~~~~~--ipvV~~----~~~~~~~~~-~~V~~d~~-~~g~~~~~~ 112 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHGRAEVL-KPWV-KRALDAG--IPVVAF----DVDSDNPKV-NNTTQDDY-SLARLSLDQ 112 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhh-HHHH-HHHHHcC--CCEEEe----cCCCCCCcc-ceeeechH-HHHHHHHHH
Confidence 455667777778999999998764321 2223 3344444 677765 444332221 35665532 233333444
Q ss_pred HHHHHhhccCceEEEE
Q 011084 248 VCTDALSAEKYYYFIR 263 (494)
Q Consensus 248 l~~da~S~~k~~~~Ve 263 (494)
+......+.+ +.|+-
T Consensus 113 l~~~~~g~~~-i~~i~ 127 (273)
T cd06305 113 LVKDLGGKGN-VGYVN 127 (273)
T ss_pred HHHHhCCCCC-EEEEE
Confidence 4333233444 55553
No 116
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=64.44 E-value=17 Score=37.28 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
..+++++++.|.+ .+|.++||||-.| .|..+|+|-+++.+.++-.|-=|.
T Consensus 196 T~~RQ~a~~~La~-~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~ 245 (281)
T PF02401_consen 196 TQNRQEAARELAK-EVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETAD 245 (281)
T ss_dssp HHHHHHHHHHHHC-CSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGG
T ss_pred HHHHHHHHHHHHh-hCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCcc
Confidence 3556667676654 7999999999999 677889999888775444443343
No 117
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=64.40 E-value=17 Score=38.72 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 166 TEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
.+...++.+.+.+.+.| .+|.|||--..+.|..+|-.+ .+| +++|.||-|
T Consensus 82 ~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~-~rG--ip~I~IPTT 134 (369)
T cd08198 82 PDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATA-HRG--VRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCC
Confidence 36788999999999998 999999988888887776532 234 899999988
No 118
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=63.52 E-value=67 Score=32.96 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=58.3
Q ss_pred cCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCC
Q 011084 82 TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 82 ~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
.+.-+++||||||- .+.|.+-++.. ++..+|..+++-|.- .-||=.
T Consensus 10 lP~~p~~I~vITs~-~gAa~~D~~~~----~~~r~~~~~~~~~p~---------------------~vQG~~-------- 55 (319)
T PF02601_consen 10 LPKFPKRIAVITSP-TGAAIQDFLRT----LKRRNPIVEIILYPA---------------------SVQGEG-------- 55 (319)
T ss_pred CCCCCCEEEEEeCC-chHHHHHHHHH----HHHhCCCcEEEEEec---------------------cccccc--------
Confidence 34567899999983 34444444444 444556555554431 112221
Q ss_pred CCCChHHHHHHHHHHHHcC----CCEEEEecCcchHHHHHHHHHHHHh---cCCCCeEE
Q 011084 162 QIRTTEQVNAALTACKNLN----LDGLVIIGGVTSNTDAAYLAETFAE---AKCPTKVV 213 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~----Id~LviIGGd~S~~~A~~Lae~~~~---~~~~i~VI 213 (494)
.++++-++++.+.+.+ +|.+|++=|-||...-..+.++-.. ..+++|||
T Consensus 56 ---A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 56 ---AAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred ---hHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEE
Confidence 3566777777777765 9999999999998876554433221 14567776
No 119
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=63.46 E-value=55 Score=31.55 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=67.8
Q ss_pred EEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC---------CeeecCHhHHhcccccCCcccccccCC
Q 011084 91 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 91 Il~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~---------~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
++++||+.|-.... +.+ ......+++.=+|..=+++. ++=-++++..+.+... |..+. +.
T Consensus 2 ~Ii~~g~~~~~~~~-----~~~--~~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~---~~ 70 (208)
T cd07995 2 LILLGGPLPDSPLL-----LKL--WKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSK-GVEII---HF 70 (208)
T ss_pred EEEECCcCCcchhH-----HHh--hccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhc-CCeEE---EC
Confidence 67788888744433 111 23456789999998887764 3444566677767655 33233 22
Q ss_pred CC-CChHHHHHHHHHHHHcCCCEEEEecCcch-----HHHHHHHHHH
Q 011084 162 QI-RTTEQVNAALTACKNLNLDGLVIIGGVTS-----NTDAAYLAET 202 (494)
Q Consensus 162 k~-~~~e~~~~~~~~l~~~~Id~LviIGGd~S-----~~~A~~Lae~ 202 (494)
.. ++..+++++++.+.+++-+-++++|+.|. +.+...|..+
T Consensus 71 p~~KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~ 117 (208)
T cd07995 71 PDEKDFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLLLKY 117 (208)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHH
Confidence 22 34568999999999999999999999876 4555556554
No 120
>PRK13337 putative lipid kinase; Reviewed
Probab=63.11 E-value=13 Score=37.87 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHH-HHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAY-LAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~-Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
..++++.+...+.|.||++|||||...+.. |.+ .+.++++--+|.==-||+. .++|...
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~----~~~~~~lgiiP~GT~NdfA-----r~lgi~~ 105 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE----KENRPKLGIIPVGTTNDFA-----RALHVPR 105 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh----CCCCCcEEEECCcCHhHHH-----HHcCCCC
Confidence 334444455667899999999999877653 332 3334677778987788886 4566543
No 121
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=62.11 E-value=1.2e+02 Score=28.06 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC-CCCCCcCchhHHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ-FVETNVGFDTICKVNSQLI 245 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~-~ie~S~GFdTA~~~~~~~I 245 (494)
+...++++.+...++|+++..+.+..... +.+.+.+.+ +++|.+=.+.+...... ..-..+.+..+.+..++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 45566677777789999988877655432 344444444 68887755444311111 1113444444555555544
Q ss_pred HHH
Q 011084 246 SNV 248 (494)
Q Consensus 246 ~nl 248 (494)
...
T Consensus 120 ~~~ 122 (269)
T cd01391 120 AEK 122 (269)
T ss_pred HHh
Confidence 433
No 122
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.94 E-value=82 Score=30.42 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=57.3
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
.|||++..-+.|-...++.|+.+.+++. +..++- ..+. .+++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~---------------------------------~~~~---~~~~ 42 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA--GYSLLI---------------------------------ANSL---NDPE 42 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--CCEEEE---------------------------------EeCC---CChH
Confidence 3789998777888888889998887643 333321 1111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTID 220 (494)
...++++.+...++||+++.+++.... .+.+.+++.+ ++||.+=...+
T Consensus 43 ~~~~~i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 43 RELEILRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 556778889999999999998764321 2233444444 67777654444
No 123
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.57 E-value=94 Score=27.77 Aligned_cols=90 Identities=11% Similarity=0.159 Sum_probs=53.7
Q ss_pred EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEE
Q 011084 183 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFI 262 (494)
Q Consensus 183 ~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~V 262 (494)
.+++|=+|..-..-..|++ +.+.+ .+++.|=|+-|++++. -...++.++..+.-+.+ -.++
T Consensus 2 t~vliR~Ds~~Kil~ALaD-leRya-giki~gkPrii~p~~a-------------D~~~~~ilGe~R~k~~~----aa~a 62 (125)
T COG1844 2 TIVLIRADSYDKILTALAD-LERYA-GIKIRGKPRIIPPELA-------------DEILSSILGEVRKKCKV----AAVA 62 (125)
T ss_pred eEEEEecCcHHHHHHHHHH-HHHhc-CceeecCCcccChhhH-------------HHHHHHHHHHHhcccch----hhee
Confidence 4788888888766667775 33344 5899999999999985 23455666666433322 2466
Q ss_pred EecCCCccHHHHHhhhhcCCcEEEeCCcc
Q 011084 263 RLMGRRASHVALECTLQSHPNMVILGEEV 291 (494)
Q Consensus 263 evMGR~ag~lAl~~aLat~p~~ilIpEe~ 291 (494)
|+-+-.+--|-----+---|++++||++.
T Consensus 63 ~v~~~a~~aI~rIr~IHPPAHiIVIs~r~ 91 (125)
T COG1844 63 EVEEPASKAIGRIRKIHPPAHIIVISPRH 91 (125)
T ss_pred eecCccHHHHHHHHhcCCCceEEEeCCCc
Confidence 66544321111111111236888888763
No 124
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=60.54 E-value=14 Score=32.55 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCEEEEecCcchHHHHHHHHHHHHhcCC--CCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 181 LDGLVIIGGVTSNTDAAYLAETFAEAKC--PTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 181 Id~LviIGGd~S~~~A~~Lae~~~~~~~--~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
.|.+|++|||||...+. ..+.+... .+++.-+|.==-||+. .++|+.+-...
T Consensus 55 ~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a-----r~lg~~~~~~~ 108 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA-----RSLGIPSDPEA 108 (130)
T ss_dssp -SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH-----HHTT--SSHHH
T ss_pred ccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH-----HHcCCCCCcHH
Confidence 48999999999987753 22333332 4589999987788875 67787776665
No 125
>PRK10586 putative oxidoreductase; Provisional
Probab=60.11 E-value=19 Score=37.97 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ 226 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~ 226 (494)
+.+..+++.+..+ .+.|.+|-|||--+++.|..++.. ..+++|.||-|-.+|-..+
T Consensus 72 ~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s 127 (362)
T PRK10586 72 SESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWT 127 (362)
T ss_pred CHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCcccccccc
Confidence 3566777766665 589999999999999999988853 2579999998887775443
No 126
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=59.52 E-value=19 Score=38.42 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 166 TEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
.+...++.+.+++++.| .+|-|||--+.+.|..+|-. ..+ +++.|.||-|
T Consensus 94 ~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~r--gip~I~IPTT 146 (389)
T PRK06203 94 PALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHR--GVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcC--CCCEEEEcCC
Confidence 36789999999999998 99999998888888777643 223 4799999998
No 127
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=59.19 E-value=74 Score=31.38 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=58.1
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
.|||++..-..|-...++.|+-+.+++. +..+. +..+. .+++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKEL--GAEVI---------------------------------VQNAN---GDPA 42 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 3778887666667777777777766532 22222 11111 1244
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
...+.++.+...++|++++.+.+.+... ..| +.+.+.+ ++||.+ |.+........++++|-
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~l-~~l~~~~--ipvV~~----~~~~~~~~~~~~v~~d~ 103 (288)
T cd01538 43 KQISQIENMIAKGVDVLVIAPVDGEALA-SAV-EKAADAG--IPVIAY----DRLILNSNVDYYVSFDN 103 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhHH-HHH-HHHHHCC--CCEEEE----CCCCCCCCcceEEEeCh
Confidence 4567777788899999999886654211 223 3344444 688864 55544332223566553
No 128
>PRK13055 putative lipid kinase; Reviewed
Probab=58.46 E-value=19 Score=37.38 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~-~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
++.++.+...+.|.+|++|||||+..+. -|.+ .+..+++--+|.==-||+. .++|..+
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA-----r~Lgi~~ 107 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA-----RALKIPR 107 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH-----HHcCCCC
Confidence 3444445567789999999999987654 3432 2334567778987788876 4566543
No 129
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=58.27 E-value=77 Score=34.38 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=61.8
Q ss_pred cCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCC
Q 011084 82 TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 82 ~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
.+.-|+|||||||-. + +++.-+...+...+|..+++-|. -.-||-.
T Consensus 125 lP~~p~~i~vits~~-~----aa~~D~~~~~~~r~p~~~~~~~~---------------------~~vQG~~-------- 170 (432)
T TIGR00237 125 LPHFPKRVGVITSQT-G----AALADILHILKRRDPSLKVVIYP---------------------TLVQGEG-------- 170 (432)
T ss_pred CCCCCCEEEEEeCCc-c----HHHHHHHHHHHhhCCCceEEEec---------------------ccccCcc--------
Confidence 345679999999743 3 45555555555556655555222 1123322
Q ss_pred CCCChHHHHHHHHHHHHcC-CCEEEEecCcchHHHHHHHHHHHHh---cCCCCeEE-Eeeeccc
Q 011084 162 QIRTTEQVNAALTACKNLN-LDGLVIIGGVTSNTDAAYLAETFAE---AKCPTKVV-GVPVTLN 220 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~-Id~LviIGGd~S~~~A~~Lae~~~~---~~~~i~VI-gVPkTID 220 (494)
....+-++++.+...+ +|.+||+=|-||...-..+.++-.. ..+++||| ||=--+|
T Consensus 171 ---a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D 231 (432)
T TIGR00237 171 ---AVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETD 231 (432)
T ss_pred ---HHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCC
Confidence 2455666666666544 8999999999999887655544322 26678886 3443343
No 130
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=57.00 E-value=27 Score=41.13 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~La 200 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++
T Consensus 524 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 524 TLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 457899999999999999999999999999987776
No 131
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.89 E-value=13 Score=38.44 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=38.3
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHH---HHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN---SQLISNVC 249 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~---~~~I~nl~ 249 (494)
+.|.+|++|||||+-.++.... +.+++|+||.. . -++||-|..... -++++++.
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~--G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------G--GHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------C--CcceEecCchhhcchHHHHHHHH
Confidence 6899999999999887765532 34689999984 1 378999875321 45555554
No 132
>PRK13057 putative lipid kinase; Reviewed
Probab=56.06 E-value=29 Score=35.03 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~-~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+..+.++. ...+.|.+|++|||||...+. .|. +.++++-.+|.===||+. .++|...
T Consensus 37 ~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~l~------~~~~~lgiiP~GT~Ndfa-----r~Lg~~~ 96 (287)
T PRK13057 37 PDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAPALV------ETGLPLGILPLGTANDLA-----RTLGIPL 96 (287)
T ss_pred HHHHHHHHHH-HHcCCCEEEEECchHHHHHHHHHHh------cCCCcEEEECCCCccHHH-----HHcCCCC
Confidence 3444455444 346789999999999987764 332 225788889987788886 5666653
No 133
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=56.04 E-value=78 Score=34.12 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=61.1
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
+.-|+|||||||-. + +++.-+...+...+|..+++-|.- .-||=.
T Consensus 132 P~~p~~I~viTs~~-g----Aa~~D~~~~~~~r~p~~~~~~~~~---------------------~vQG~~--------- 176 (438)
T PRK00286 132 PFFPKRIGVITSPT-G----AAIRDILTVLRRRFPLVEVIIYPT---------------------LVQGEG--------- 176 (438)
T ss_pred CCCCCEEEEEeCCc-c----HHHHHHHHHHHhcCCCCeEEEecC---------------------cCcCcc---------
Confidence 34589999999743 3 345555555555566655554431 112221
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh---cCCCCeEE-EeeecccC
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE---AKCPTKVV-GVPVTLNG 221 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~---~~~~i~VI-gVPkTIDN 221 (494)
.+..+-++++.+...++|.+||+=|-||...-..+.++..- ..+++||| ||=--+|.
T Consensus 177 --A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~ 237 (438)
T PRK00286 177 --AAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDF 237 (438)
T ss_pred --HHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCc
Confidence 24556677777776668999999999998876544433221 25577876 44444444
No 134
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=54.43 E-value=93 Score=33.93 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=69.8
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
+..|++||||||=- -|||+-+...++...|..+|+-+.- .-||=.
T Consensus 132 P~~p~~IGVITS~t-----gAairDIl~~~~rR~P~~~viv~pt---------------------~VQG~~--------- 176 (440)
T COG1570 132 PFFPKKIGVITSPT-----GAALRDILHTLSRRFPSVEVIVYPT---------------------LVQGEG--------- 176 (440)
T ss_pred CCCCCeEEEEcCCc-----hHHHHHHHHHHHhhCCCCeEEEEec---------------------cccCCC---------
Confidence 45678999999722 3789999999988888877775442 113321
Q ss_pred CCChHHHHHHHHHHHHcC-CCEEEEecCcchHHHHHHHHHHHHhc---CCCCeEEE
Q 011084 163 IRTTEQVNAALTACKNLN-LDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVVG 214 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~-Id~LviIGGd~S~~~A~~Lae~~~~~---~~~i~VIg 214 (494)
..+++-++++.+.+.+ +|.|||.=|-||...-..+.|+...+ .++||||.
T Consensus 177 --A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 177 --AAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred --cHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 2466778888888888 99999999999999887776654332 55788874
No 135
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=53.69 E-value=85 Score=32.86 Aligned_cols=49 Identities=27% Similarity=0.227 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~--~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+..+. ..+||-.
T Consensus 60 tp~~w~~la~~I~~~~~~~dG~VVtHGTDTme~TA~~Ls~~l~~--~kPVVlT 110 (336)
T TIGR00519 60 KPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAALSFMLET--PKPVVFT 110 (336)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEccCCchHHHHHHHHHHHcCC--CCCEEEE
Confidence 567777777777654 799999999999998866544444433 4566643
No 136
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=53.22 E-value=65 Score=30.87 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch--hHHHHHHH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD--TICKVNSQ 243 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd--TA~~~~~~ 243 (494)
++...++++.+...++|++|+.+.+.+... .+.+.+. +++||.+ |++...+.+ .++++| .+.+..++
T Consensus 41 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~----~~~l~~~--~ipvV~~----~~~~~~~~~-~~v~~d~~~~~~~~~~ 109 (268)
T cd06298 41 KEKELKVLNNLLAKQVDGIIFMGGKISEEH----REEFKRS--PTPVVLA----GSVDEDNEL-PSVNIDYKKAAFEATE 109 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCcHHH----HHHHhcC--CCCEEEE----ccccCCCCC-CEEEECcHHHHHHHHH
Confidence 344556677788899999999986543222 2233333 4678776 333332221 345555 44554444
Q ss_pred HH
Q 011084 244 LI 245 (494)
Q Consensus 244 ~I 245 (494)
.+
T Consensus 110 ~l 111 (268)
T cd06298 110 LL 111 (268)
T ss_pred HH
Confidence 43
No 137
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=53.06 E-value=1.2e+02 Score=29.25 Aligned_cols=92 Identities=14% Similarity=0.025 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
+|||++..-..|....++.|+-++++.. +.++. +-.... -.+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~~-~~~~~ 44 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKL--GVSVD---------------------------------IQAAPS-EGDQQ 44 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHh--CCeEE---------------------------------EEccCC-CCCHH
Confidence 4788887666677777777777776532 22221 100000 01234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
...++++.+...++|++|+.+.+.+...+ .+ +++.+.+ ++||.+-...
T Consensus 45 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-~~-~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 45 GQLSIAENMINKGYKGLLFSPISDVNLVP-AV-ERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHHhCCCEEEECCCChHHhHH-HH-HHHHHCC--CeEEEECCCC
Confidence 45577888888999999987665432222 22 3444444 7888764433
No 138
>PRK13059 putative lipid kinase; Reviewed
Probab=52.98 E-value=28 Score=35.41 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=36.8
Q ss_pred HcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 178 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 178 ~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+.|.+|++|||||...+. +.+.+.+.++++--+|.==-||+. .++|...
T Consensus 54 ~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA-----r~lgi~~ 104 (295)
T PRK13059 54 DESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA-----KFLGMPT 104 (295)
T ss_pred hcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH-----HHhCCCC
Confidence 46789999999999977653 223334556788889987788876 5666654
No 139
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=52.98 E-value=32 Score=37.45 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHH--HHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNT--DAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~--~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~ 242 (494)
++..+.++.+.|+ +-|+++|-||.|+-- +.-.-++|+++++ ++..| .|+|.+-|+=.++
T Consensus 350 ~~~~~~~aW~~l~--~adGilvPGGFG~RGveG~i~Aak~ARen~--iP~LG---------------iCLGmQ~AvIEfa 410 (585)
T KOG2387|consen 350 DPRKYHAAWQKLK--SADGILVPGGFGDRGVEGKILAAKWARENK--IPFLG---------------ICLGMQLAVIEFA 410 (585)
T ss_pred ChhHHHHHHHHhc--cCCeEEeCCcccccchhHHHHHHHHHHhcC--CCeEe---------------eehhhhHHHHHHH
Confidence 4567888888887 789999999999833 3333345555554 56665 4999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 011084 243 QLISNVCTDALSAE 256 (494)
Q Consensus 243 ~~I~nl~~da~S~~ 256 (494)
..+-.+ .||.|..
T Consensus 411 RnvLg~-~dAnStE 423 (585)
T KOG2387|consen 411 RNVLGL-KDANSTE 423 (585)
T ss_pred HHhhCC-CCCCccc
Confidence 999888 4888864
No 140
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=52.34 E-value=28 Score=35.97 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 167 EQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 167 e~~~~~~~~l~~~-~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+.++++.+.+++. +.|.+|-|||--.++.|..+|.. + ++++|.||-|.-+|-.
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~ 114 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGI 114 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCcc
Confidence 3455666666665 59999999999999998888762 2 4799999988876543
No 141
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=51.90 E-value=34 Score=34.66 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~-~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd 235 (494)
++.++.+.+.+.|.+|++|||||...+. -|.+. ..+..+++--+|.==-||+. .++|-.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA-----r~l~ip 101 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA-----TAAGIP 101 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH-----HhcCCC
Confidence 3444444567789999999999977754 33321 11234568889988889886 455543
No 142
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=51.88 E-value=37 Score=31.81 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
++++.+.+.+++.++.+++.+|.+.|- +..=+-.++- ....+|||||-.
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~-aa~Lpgvva~-----~t~~PVIgvP~~ 85 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG-AAHLPGMVAA-----LTPLPVIGVPVP 85 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc-cchhHHHHHh-----ccCCCEEEecCC
Confidence 367888999999999999776666654 2222233332 346899999953
No 143
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=51.30 E-value=18 Score=36.30 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+.+...++.+.++..+.|.+|-+||--.++.|...|... +++.|.||-+..+|=.
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~-----~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL-----GIPFISVPTAASHDGF 114 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH-----T--EEEEES--SSGGG
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc-----CCCEEEeccccccccc
Confidence 466788888888888999999999988777777776543 5799999999888854
No 144
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=50.95 E-value=71 Score=31.12 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=59.9
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhh--------hcCCeeecCH--hHHhcccccCCcccc
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL--------FAQKTLEVTK--EILSTYKNQGGYDML 156 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL--------~~~~~ieLt~--~~v~~~~n~GG~~~l 156 (494)
+||||+-.-|.+. .-+.+.+. ..+++|.++..-..=+ ++.+..|++. +++.++ |.+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~--~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~------DaV 66 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEAL--KRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGH------DAV 66 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHH--hCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCC------ceE
Confidence 5899998877653 34555543 4689999988765433 3456777776 555443 333
Q ss_pred cccCC-C-CCC----hHHHHHHHHHHHHcCCCEEEEecCcchHH
Q 011084 157 GRTKD-Q-IRT----TEQVNAALTACKNLNLDGLVIIGGVTSNT 194 (494)
Q Consensus 157 gS~R~-k-~~~----~e~~~~~~~~l~~~~Id~LviIGGd~S~~ 194 (494)
=|.-. . ..+ ....+..++.++.-+..-|+|+||-||+.
T Consensus 67 IsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~ 110 (211)
T COG2910 67 ISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLE 110 (211)
T ss_pred EEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceE
Confidence 22221 1 111 12356677888888999999999999953
No 145
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=50.72 E-value=2.2e+02 Score=28.56 Aligned_cols=89 Identities=28% Similarity=0.354 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
+|||+.++ +.|....++.|+.+.|+... +.+ +.+++ .+.+.-| +.+
T Consensus 1 ~v~i~~~~-~~~~~~~~~~gf~~~L~~~g--------------~~~-~~~~~------~~~~a~~------------d~~ 46 (294)
T PF04392_consen 1 KVGILQFI-SHPALDDIVRGFKDGLKELG--------------YDE-KNVEI------EYKNAEG------------DPE 46 (294)
T ss_dssp EEEEEESS---HHHHHHHHHHHHHHHHTT----------------C-CCEEE------EEEE-TT-------------HH
T ss_pred CeEEEEEe-ccHHHHHHHHHHHHHHHHcC--------------Ccc-ccEEE------EEecCCC------------CHH
Confidence 68888874 68889999999999987542 122 22222 1222222 356
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
.+.++++.+...+.|-++.+|.+-+.. +.++.. + .++||.+-.
T Consensus 47 ~~~~~~~~l~~~~~DlIi~~gt~aa~~----~~~~~~--~-~iPVVf~~V 89 (294)
T PF04392_consen 47 KLRQIARKLKAQKPDLIIAIGTPAAQA----LAKHLK--D-DIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHCCTS-SEEEEESHHHHHH----HHHH-S--S--S-EEEECE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHHHH----HHHhcC--C-CcEEEEEec
Confidence 788888999999999888776555332 333322 2 177777664
No 146
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=50.05 E-value=1.1e+02 Score=29.39 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=60.4
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
.|||++..-+.|=.+.++.|+-+++++. +..+.-+. +. .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~--------------------------------~~----~~~~ 42 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--GYSTIIGN--------------------------------SD----ENPE 42 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--CCEEEEEe--------------------------------CC----CCHH
Confidence 3788887767777788888888877542 23332110 10 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.....++.+...++||+++.+.+.+.. .+ +.+.+++ ++||. +|++.....+ .+++.|-
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~l~~~~--ipvV~----~~~~~~~~~~-~~v~~d~ 100 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSAE---QL-EDLLKRG--IPVVF----VDREITGSPI-PFVTSDP 100 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCChH---HH-HHHHhCC--CCEEE----EecccCCCCC-CEEEECc
Confidence 556788889999999999998765432 23 3444444 67775 4555433221 3566664
No 147
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=49.80 E-value=1.6e+02 Score=28.92 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=48.2
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCC---CCC-------CcCchhHHHHHHHHHHHHHHHHhhccC
Q 011084 188 GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF---VET-------NVGFDTICKVNSQLISNVCTDALSAEK 257 (494)
Q Consensus 188 GGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~---ie~-------S~GFdTA~~~~~~~I~nl~~da~S~~k 257 (494)
||-|-=|.|..||-++.++|.++-+ ||-|-.++- .+. ...++.....-...+......+.....
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~Vll------iD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y 84 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVAL------FEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGF 84 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEE------EeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCC
Confidence 7888888888888888877754322 455554431 000 000000000000112222122222222
Q ss_pred ceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcch
Q 011084 258 YYYFIRLMGRRASHVALECTLQSHPNMVILGEEVA 292 (494)
Q Consensus 258 ~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~ 292 (494)
-|.||-+-|.. |.++..+.. .+|+|+||=.+.
T Consensus 85 D~iiID~pp~~-~~~~~~al~--~aD~vliP~~ps 116 (231)
T PRK13849 85 DYALADTHGGS-SELNNTIIA--SSNLLLIPTMLT 116 (231)
T ss_pred CEEEEeCCCCc-cHHHHHHHH--HCCEEEEeccCc
Confidence 35677777754 566554333 469999997653
No 148
>PRK05670 anthranilate synthase component II; Provisional
Probab=49.20 E-value=29 Score=32.81 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHH
Q 011084 177 KNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (494)
Q Consensus 177 ~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~ 241 (494)
++++.|+||+-||.++-..+....+.+++...+++|.|| |+|+.-.+...
T Consensus 40 ~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI---------------ClG~Qlla~al 89 (189)
T PRK05670 40 EALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV---------------CLGHQAIGEAF 89 (189)
T ss_pred HhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE---------------CHHHHHHHHHh
Confidence 556789999999999876544333333222223667764 99988766654
No 149
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.42 E-value=1.2e+02 Score=29.74 Aligned_cols=67 Identities=22% Similarity=0.134 Sum_probs=46.2
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
++||++...-..|....++.|+.+.+++. +.++ ++..+. .++
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~--gy~~---------------------------------~~~~~~---~~~ 42 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAI--GWNL---------------------------------RILDGR---GSE 42 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHc--CcEE---------------------------------EEECCC---CCH
Confidence 47899998777888888888888877543 2221 111111 134
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcc
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVT 191 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~ 191 (494)
++..++++.+...++|++|+.+.+-
T Consensus 43 ~~~~~~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 43 AGQAAALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCH
Confidence 5556888999999999999998653
No 150
>PRK12361 hypothetical protein; Provisional
Probab=47.88 E-value=27 Score=38.78 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc-Cchh
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV-GFDT 236 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~-GFdT 236 (494)
..+.++.+.+.+.|.+|++|||||...+.. .+. +.++++--+|.==-||+. .++ |..+
T Consensus 286 a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~--~~~~~lgiiP~GTgNdfA-----r~L~gi~~ 344 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGDGTVTEVAS---ELV--NTDITLGIIPLGTANALS-----HALFGLGS 344 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHh--cCCCCEEEecCCchhHHH-----HHhcCCCC
Confidence 345555555678899999999999877542 221 234677788987788886 455 5543
No 151
>PRK00861 putative lipid kinase; Reviewed
Probab=47.24 E-value=33 Score=34.85 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~-~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.++.....+.|.+|++|||||...+. .|. +.++++--+|.===||+. .++|...
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~------~~~~~lgviP~GTgNdfA-----r~lgi~~ 103 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGDGTLSAVAGALI------GTDIPLGIIPRGTANAFA-----AALGIPD 103 (300)
T ss_pred HHHHHHHHhcCCCEEEEECChHHHHHHHHHHh------cCCCcEEEEcCCchhHHH-----HHcCCCC
Confidence 3445445567889999999999977754 332 224677778977777775 5777765
No 152
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.57 E-value=1e+02 Score=29.40 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd 235 (494)
.+...+.++.+...++|++++.+.+.+... .+ +.+.+.| ++||.+ |++.....+ .++++|
T Consensus 41 ~~~~~~~i~~~~~~~vdgiii~~~~~~~~~--~~-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 100 (268)
T cd06289 41 VERQEQLLSTMLEHGVAGIILCPAAGTSPD--LL-KRLAESG--IPVVLV----AREVAGAPF-DYVGPD 100 (268)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCccHH--HH-HHHHhcC--CCEEEE----eccCCCCCC-CEEeec
Confidence 344556778888999999999987654322 22 2333344 688865 333332222 356665
No 153
>PLN02327 CTP synthase
Probab=46.42 E-value=20 Score=40.02 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHH--HHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~--A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~ 244 (494)
+.+..+.+.|+ +.|++++-||.|+-.. ....++++++++ +++.|| |+|+.-++-.++.-
T Consensus 351 ~~y~~~~~~L~--~~DGIvvpGGfG~~~~~G~i~ai~~are~~--iP~LGI---------------ClGmQl~viefaRn 411 (557)
T PLN02327 351 DAYAAAWKLLK--GADGILVPGGFGDRGVEGKILAAKYARENK--VPYLGI---------------CLGMQIAVIEFARS 411 (557)
T ss_pred chhhhhHHhhc--cCCEEEeCCCCCCcccccHHHHHHHHHHcC--CCEEEE---------------cHHHHHHHHHHHHh
Confidence 34555656554 7799999999865332 233345655444 677774 99999999999998
Q ss_pred HHHHHHHHhhc
Q 011084 245 ISNVCTDALSA 255 (494)
Q Consensus 245 I~nl~~da~S~ 255 (494)
+-.+. ||.|.
T Consensus 412 vlG~~-dAnS~ 421 (557)
T PLN02327 412 VLGLK-DANST 421 (557)
T ss_pred hcCCc-CCCcc
Confidence 88884 88886
No 154
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=46.14 E-value=36 Score=34.39 Aligned_cols=110 Identities=20% Similarity=0.293 Sum_probs=66.1
Q ss_pred CCChHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH
Q 011084 163 IRTTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~ 239 (494)
.++-+.++++.+.+.+++++ .+|.|||--..+-+-..|.-+. + +++.|-||-|+-.= +|.|+|--||++
T Consensus 9 ~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~-R--Gi~~i~vPTTLLa~-----vDssiGgK~~vN 80 (260)
T PF01761_consen 9 SKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYM-R--GIPFIQVPTTLLAQ-----VDSSIGGKTGVN 80 (260)
T ss_dssp GSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBT-T----EEEEEE-SHHHH-----HTTTSSSEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHc-c--CCceEeccccHHHH-----HhcccCCCeeee
Confidence 34668899999999999995 9999999888877777766443 3 48999999887543 336776666654
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHH
Q 011084 240 VNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQ 310 (494)
Q Consensus 240 ~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~ 310 (494)
+ ...++. |= .=..|..|++--... +..+-.++...+++.|+
T Consensus 81 ~------------~~~KN~---iG--------------~f~~P~~V~iD~~~l-~tL~~~e~~~G~aEiiK 121 (260)
T PF01761_consen 81 F------------PGGKNL---IG--------------TFYQPEAVLIDPSFL-KTLPPREIRSGLAEIIK 121 (260)
T ss_dssp E------------TTEEEE---EE--------------EE---SEEEEEGGGG-GGS-HHHHHHHHHHHHH
T ss_pred C------------CCCCCc---cc--------------ccCCCceeEEcHHHH-hhccHHHHHhCHHHHHH
Confidence 3 112221 11 113688888865543 33444555555566654
No 155
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.97 E-value=2.7e+02 Score=26.51 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcch
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTS 192 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S 192 (494)
.+...+.++.+...++||+++.+.+-+
T Consensus 41 ~~~~~~~i~~l~~~~~dgiii~~~~~~ 67 (265)
T cd06290 41 QSRELEALELLKSRRVDALILLGGDLP 67 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 455667888999999999999987644
No 156
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=45.77 E-value=3e+02 Score=27.80 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++..+.+++.++++++|+++. +-++.....+.+.+.+.+.| +.+++-
T Consensus 54 ~~~~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g--~~~~~~ 101 (326)
T PRK12767 54 DPNYIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIG--VKVLVS 101 (326)
T ss_pred ChhHHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcC--cEEEeC
Confidence 3456788899999999997654 55555555666667676555 344443
No 157
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=45.75 E-value=37 Score=31.61 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+++.+.+.++++++.+.+.+|.+-|-. ..=+-.++-. ...+|||||-
T Consensus 40 ~p~~l~~~~~~~~~~~~~viIa~AG~~-a~Lpgvva~~-----t~~PVIgvP~ 86 (150)
T PF00731_consen 40 TPERLLEFVKEYEARGADVIIAVAGMS-AALPGVVASL-----TTLPVIGVPV 86 (150)
T ss_dssp SHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHH-----SSS-EEEEEE
T ss_pred CHHHHHHHHHHhccCCCEEEEEECCCc-ccchhhheec-----cCCCEEEeec
Confidence 578888888888888888777776663 3334445432 3679999993
No 158
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=45.50 E-value=1.8e+02 Score=30.03 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCC
Q 011084 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF 227 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~--~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ 227 (494)
+++++.++.+.+++. +.|++||.-|-|||...+.+-..+.+ +.+.+||-.=.-.--+-.++|
T Consensus 55 t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~-~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLD-NLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp -HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEE-S-SSEEEEE--SS-TTSTT-S
T ss_pred CHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhc-CCCCCEEEeCCcCCCcCCCCc
Confidence 566777666666655 69999999999999985544444433 334677765333333333333
No 159
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=45.14 E-value=35 Score=30.05 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCC---CeEEEeeecccCCCC
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCP---TKVVGVPVTLNGDLK 224 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~---i~VIgVPkTIDNDl~ 224 (494)
..|.+|++|||||...+.. .+.+.... +++.-+|.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999887632 22222222 688889987788886
No 160
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=44.62 E-value=57 Score=29.14 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=56.3
Q ss_pred CCEEEEEccchhhhhcC----------CeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEe
Q 011084 118 KSTLLGFLGGSEGLFAQ----------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187 (494)
Q Consensus 118 ~~~v~Gf~~G~~GL~~~----------~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviI 187 (494)
..-+++.=+|..=+.+. ++=-++++..+.|.+.|-. ++-.. . ++..+++++++.+.+++.+-++++
T Consensus 16 ~~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~-~~~~p-~--kD~TD~e~Al~~~~~~~~~~i~v~ 91 (123)
T PF04263_consen 16 ADFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVE-IIHFP-E--KDYTDLEKALEYAIEQGPDEIIVL 91 (123)
T ss_dssp TSEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTE-EEEE--S--TTS-HHHHHHHHHHHTTTSEEEEE
T ss_pred CCEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccc-eeccc-c--cccCHHHHHHHHHHHCCCCEEEEE
Confidence 34566777777666655 3334667777778888554 55443 3 345689999999999999999999
Q ss_pred cCcch-----HHHHHHHHHHHHhcCC
Q 011084 188 GGVTS-----NTDAAYLAETFAEAKC 208 (494)
Q Consensus 188 GGd~S-----~~~A~~Lae~~~~~~~ 208 (494)
|+-|. +.+...|.++. +.+.
T Consensus 92 Ga~GgR~DH~lanl~~l~~~~-~~~~ 116 (123)
T PF04263_consen 92 GALGGRFDHTLANLNLLYKYK-KRGI 116 (123)
T ss_dssp S-SSSSHHHHHHHHHHHHHHH-TTTS
T ss_pred ecCCCcHHHHHHHHHHHHHHH-HcCC
Confidence 99875 55566666553 3443
No 161
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=44.32 E-value=35 Score=32.33 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=34.2
Q ss_pred HHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHH
Q 011084 175 ACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (494)
Q Consensus 175 ~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~ 242 (494)
.+.+++.|+||+-||.|+-..+..-.+.+++...+++|.|| |+|+.-.+..+-
T Consensus 38 ~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI---------------C~G~Qll~~~~G 90 (188)
T TIGR00566 38 EIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV---------------CLGHQAMGQAFG 90 (188)
T ss_pred HHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE---------------CHHHHHHHHHcC
Confidence 34667899999999998865532212222221225788875 999987776654
No 162
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=44.31 E-value=54 Score=36.07 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=57.4
Q ss_pred CCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcc--cccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHH
Q 011084 118 KSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD--MLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTD 195 (494)
Q Consensus 118 ~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~--~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~ 195 (494)
-.+++-|.|=..| +++-..+-++.+..+....|.. +.-|.+ ..+-.+.++.+...+.|++|++|||||...
T Consensus 111 ~kr~lvIvNP~SG--kg~a~k~~~~~v~~~L~~~gi~~~v~~T~~-----~ghA~~la~~~~~~~~D~VV~vGGDGTlnE 183 (481)
T PLN02958 111 PKRLLVFVNPFGG--KKSASKIFFDVVKPLLEDADIQLTIQETKY-----QLHAKEVVRTMDLSKYDGIVCVSGDGILVE 183 (481)
T ss_pred CcEEEEEEcCCCC--CcchhHHHHHHHHHHHHHcCCeEEEEeccC-----ccHHHHHHHHhhhcCCCEEEEEcCCCHHHH
Confidence 3467777776666 3332222233455444444432 222221 233445555555667899999999999776
Q ss_pred HH-HHHHHH-HhcCCCCeEEEeeecccCCCCC
Q 011084 196 AA-YLAETF-AEAKCPTKVVGVPVTLNGDLKN 225 (494)
Q Consensus 196 A~-~Lae~~-~~~~~~i~VIgVPkTIDNDl~~ 225 (494)
+. -|.+.- .+.+.++++--||.==-||+.-
T Consensus 184 VvNGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 184 VVNGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred HHHHHhhCccccccccCceEEecCcCcchhhh
Confidence 43 343210 0114467888899988999873
No 163
>PRK05637 anthranilate synthase component II; Provisional
Probab=44.12 E-value=48 Score=32.21 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=37.5
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHH
Q 011084 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (494)
Q Consensus 174 ~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~ 242 (494)
+.+.+.+.|++|+-||-++-..+....+.++...-+++|.|| |+|+...+..+.
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI---------------ClG~Qlla~alG 91 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI---------------CLGFQALLEHHG 91 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE---------------cHHHHHHHHHcC
Confidence 334567899999999999998875544444322224777774 999988777653
No 164
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=43.99 E-value=50 Score=36.83 Aligned_cols=52 Identities=27% Similarity=0.348 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~---Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+.+.+ -|.+|-|||--.++.|..+|--+. + ++++|-||-|.
T Consensus 251 sl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~-r--Gi~~i~vPTTl 305 (542)
T PRK14021 251 TIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWM-R--GIRYVNCPTSL 305 (542)
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHH-c--CCCEEEeCChH
Confidence 4577888888888884 899999999988888888875322 3 48999999885
No 165
>PLN02735 carbamoyl-phosphate synthase
Probab=43.34 E-value=1.7e+02 Score=35.76 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHHHHHhcC-------CCCeEEEe
Q 011084 169 VNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAK-------CPTKVVGV 215 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~Lvi-IGGd~S~~~A~~Lae~~~~~~-------~~i~VIgV 215 (494)
.+.+++.+++.++|++++ +||+-.+.-|..+.+.+.+++ .++.++|-
T Consensus 638 ~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~ 692 (1102)
T PLN02735 638 VEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGT 692 (1102)
T ss_pred HHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECC
Confidence 678899999999999996 788888888888877665442 13666663
No 166
>CHL00101 trpG anthranilate synthase component 2
Probab=42.51 E-value=36 Score=32.34 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=31.8
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 176 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 176 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
+.+++.|++|+-||.++-.......+..+....+++|.|| |+|+.-.+..
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI---------------ClG~Qlla~~ 88 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV---------------CLGHQSIGYL 88 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE---------------chhHHHHHHH
Confidence 4567899999999999876533222211111224677774 9998876653
No 167
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=42.43 E-value=3.1e+02 Score=29.69 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=69.2
Q ss_pred EEEEecCCCCCCcch-hHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC-CCCCCh
Q 011084 89 VGIVFCGRQSPGGHN-VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIRTT 166 (494)
Q Consensus 89 IgIl~sGG~aPG~n~-vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R-~k~~~~ 166 (494)
.-||+.=|-+.|-+. =|++++..+. ..|+++.-|.+ |.-||+ -|.|.| +..-..
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~--~~G~r~VVfN~---------------------RG~~g~-~LtTpr~f~ag~t 181 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQ--RKGYRVVVFNH---------------------RGLGGS-KLTTPRLFTAGWT 181 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHH--hCCcEEEEECC---------------------CCCCCC-ccCCCceeecCCH
Confidence 334444455555554 4699988775 34677776652 345676 777777 445568
Q ss_pred HHHHHHHHHHHHcCCCE-EEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 167 EQVNAALTACKNLNLDG-LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~-LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
++++.+++.+++.-=++ |+.+| .--+|+.|..|+-+.|.+.++++-
T Consensus 182 ~Dl~~~v~~i~~~~P~a~l~avG---~S~Gg~iL~nYLGE~g~~~~l~~a 228 (409)
T KOG1838|consen 182 EDLREVVNHIKKRYPQAPLFAVG---FSMGGNILTNYLGEEGDNTPLIAA 228 (409)
T ss_pred HHHHHHHHHHHHhCCCCceEEEE---ecchHHHHHHHhhhccCCCCceeE
Confidence 99999999999988777 77776 333678888899888877777653
No 168
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=42.27 E-value=2.4e+02 Score=31.87 Aligned_cols=93 Identities=25% Similarity=0.335 Sum_probs=60.6
Q ss_pred HHHHHHHH--cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHH
Q 011084 171 AALTACKN--LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNV 248 (494)
Q Consensus 171 ~~~~~l~~--~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl 248 (494)
+.++..++ +-||+++|-+|-=+...|..|-+.+-..|++ -|..=|.|||- + .++-+|
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIeq-------------------I-~svi~I 170 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIEQ-------------------I-RSVIRI 170 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHHH-------------------H-HHHHHH
Confidence 34444444 5699999999999999999998887655542 23444655541 1 122233
Q ss_pred HHHHhhccCceEEEEecCCCcc-H----------HHHHhhhhcCCcEEEe
Q 011084 249 CTDALSAEKYYYFIRLMGRRAS-H----------VALECTLQSHPNMVIL 287 (494)
Q Consensus 249 ~~da~S~~k~~~~VevMGR~ag-~----------lAl~~aLat~p~~ilI 287 (494)
. ++..... .++..-|..|| | |+.++.|..++|++++
T Consensus 171 A-ka~P~~p--Iilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~ 217 (717)
T COG4981 171 A-KANPTFP--IILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLC 217 (717)
T ss_pred H-hcCCCCc--eEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEE
Confidence 2 3333333 46666665554 3 7889999999999987
No 169
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=41.72 E-value=1e+02 Score=29.85 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCCEEEEec
Q 011084 171 AALTACKNLNLDGLVIIG 188 (494)
Q Consensus 171 ~~~~~l~~~~Id~LviIG 188 (494)
.+.+.+++++.|.+|+.|
T Consensus 71 ~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 71 ALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHhCcCEEEhHH
Confidence 456778888888766543
No 170
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=41.30 E-value=21 Score=33.52 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHHHHHH---cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCC
Q 011084 168 QVNAALTACKN---LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (494)
Q Consensus 168 ~~~~~~~~l~~---~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl 223 (494)
+..-+++.++- -++|.++++-||+-++- |.+.++++|..+-++|+|+....+|
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L 145 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPGFSTAL 145 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHH
Confidence 35555555544 68999999999998876 4455666888888888875444433
No 171
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=40.67 E-value=2e+02 Score=27.30 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=59.2
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
||++...-+.|-...++.|+.+++++. +..+.-+ .. . .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~---------------------------------~~--~-~~~~~ 43 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAH--GYQVLVC---------------------------------NS--D-NDPEK 43 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE---------------------------------cC--C-CCHHH
Confidence 778887667788888888888887643 2222100 00 0 12334
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
....++.+...++|++++.+.+..-. .+ +.+.+. +++||.+ |.++....+ .++|+|-
T Consensus 44 ~~~~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~--~ipvV~~----~~~~~~~~~-~~v~~d~ 100 (267)
T cd06283 44 EKEYLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKN--GKPVVLV----DRKIPELGV-DTVTLDN 100 (267)
T ss_pred HHHHHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcC--CCCEEEE----cCCCCCCCC-CEEEecc
Confidence 45677788889999999998765322 23 233333 4677765 455443222 4677664
No 172
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.53 E-value=2.7e+02 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl 223 (494)
++++++++++.+.+- +-++++|--.|...|..++..+...| ..+..++-....++
T Consensus 16 ~~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g--~~~~~~~~~~~~~~ 70 (179)
T TIGR03127 16 DEEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRLMHLG--FNVYVVGETTTPSI 70 (179)
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHHhCC--CeEEEeCCcccCCC
Confidence 578899999999764 57888887788777777777665555 45665554443333
No 173
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=40.52 E-value=1.5e+02 Score=31.38 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 160 KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 160 R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+..+-++.-.+.+.+..++++|..=+++-|-||-.++..++. .|+++-+|+||.
T Consensus 259 ~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~~----~Gvpt~~i~ip~ 312 (350)
T TIGR03107 259 PGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLKN----SGVPSTTIGVCA 312 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHhC----CCCcEEEEccCc
Confidence 344557888899999999999998776654466555555543 698999999993
No 174
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=40.36 E-value=3.4e+02 Score=28.27 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=86.4
Q ss_pred EEEEecCCCCCCcch--hHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC-CC-CC
Q 011084 89 VGIVFCGRQSPGGHN--VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQ-IR 164 (494)
Q Consensus 89 IgIl~sGG~aPG~n~--vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R-~k-~~ 164 (494)
--|++|||+ |=+.. .+..+++.+++. + .+.+++-|...... .-..+|++.++.++..|=. ++..+- .. -+
T Consensus 161 ~eV~lsGGD-PLl~~d~~L~~ll~~L~~i-~--~~~~IRi~tr~~~~-~P~rit~el~~~L~~~~~~-~~~vsh~nh~~E 234 (331)
T TIGR00238 161 IEILISGGD-PLMAKDHELEWLLKRLEEI-P--HLVRLRIGTRLPVV-IPQRITDELCELLASFELQ-LMLVTHINHCNE 234 (331)
T ss_pred CEEEEECCc-cccCCHHHHHHHHHHHHhc-C--CccEEEeecCCCcc-CchhcCHHHHHHHHhcCCc-EEEEccCCChHh
Confidence 368999998 55543 477788777643 2 23333333222110 1133577777777666522 222221 11 11
Q ss_pred ChHHHHHHHHHHHHcCCC----EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 165 TTEQVNAALTACKNLNLD----GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id----~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
..+...++++.|++.|+. ..+.=|=+|+......|.+.+.+.|+. |=.+..=.+.. -+=-|.+-.+.
T Consensus 235 i~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~~~~---g~~~f~~~~~~ 305 (331)
T TIGR00238 235 ITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLDKVQ---GAKHFLVPDAE 305 (331)
T ss_pred CCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcCCCC---CcccccCCHHH
Confidence 235677888889988864 445667788888888888877665531 22222111100 12235566666
Q ss_pred HHHHHHHHHHHHhh--ccCceEEEEecC
Q 011084 241 NSQLISNVCTDALS--AEKYYYFIRLMG 266 (494)
Q Consensus 241 ~~~~I~nl~~da~S--~~k~~~~VevMG 266 (494)
..+.+..+..-... -++ +++++.|
T Consensus 306 ~~~i~~~l~~~~sG~~~P~--~v~~~~g 331 (331)
T TIGR00238 306 AAQIVKELARLTSGYLVPK--FAVEIMG 331 (331)
T ss_pred HHHHHHHHHhcCCCCccee--EEecCCC
Confidence 66666665533332 233 5677655
No 175
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=40.33 E-value=3.4e+02 Score=27.68 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=60.6
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||++..+-..|--+.++.|+.+++++. +..+. +.++. .
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~--g~~l~---------------------------------i~~~~---~ 65 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVF---------------------------------VQSAN---G 65 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---C
Confidence 4679999999989999999999998887643 22222 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTID 220 (494)
+++...+.++.+...++|++++.+.+.+. ....+ +.+.+.+ ++||.+-..++
T Consensus 66 ~~~~~~~~i~~l~~~~vDGiIi~~~~~~~-~~~~l-~~~~~~~--iPvV~id~~~~ 117 (330)
T PRK10355 66 NEETQMSQIENMINRGVDVLVIIPYNGQV-LSNVI-KEAKQEG--IKVLAYDRMIN 117 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhh-HHHHH-HHHHHCC--CeEEEECCCCC
Confidence 34556677888999999999999765321 11223 2333344 78888754443
No 176
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=40.03 E-value=61 Score=34.38 Aligned_cols=38 Identities=37% Similarity=0.393 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 202 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~ 202 (494)
|...+.++++..|+-+.|.+|-|||-..+++|...+-+
T Consensus 112 tv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~ 149 (465)
T KOG3857|consen 112 TVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALL 149 (465)
T ss_pred chhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHh
Confidence 45668899999999999999999999999887666544
No 177
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=39.63 E-value=2e+02 Score=27.24 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=49.5
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
|||++..-..|-.+..+.|+-++++.. +.++ ++..+.. +++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~---------------------------------~~~~~~~---~~~~ 43 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYEN--GYQM---------------------------------LLMNTNF---SIEK 43 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHC--CCEE---------------------------------EEEeCCC---CHHH
Confidence 788887777777777777777766432 2221 1111111 2344
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
..+.++.+...++|++|+.+.+.+.. .+ +.+.+.+ ++||.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~~~---~~-~~~~~~~--ipvv~~ 84 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTITDE---HR-EAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH---HH-HHHhcCC--CCEEEE
Confidence 55667778889999999998764422 22 3333344 677765
No 178
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=39.45 E-value=64 Score=35.29 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTID 220 (494)
.+++.++..|-+..+|.+|||||--|-- ...|+|-+.+.|.+.--|-=|.-|+
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSSN-T~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSSN-TSHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCcc-HHHHHHHHHHhCCCEEEECCHHHcC
Confidence 4566666667556899999999998853 4568888877776666666666666
No 179
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=39.16 E-value=1.8e+02 Score=35.28 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHHHHHhcCCCCeEEEe-eeccc
Q 011084 169 VNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAKCPTKVVGV-PVTLN 220 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~Lvi-IGGd~S~~~A~~Lae~~~~~~~~i~VIgV-PkTID 220 (494)
.+.+.+.+++.++|++++ +||.-.. .+++.+++.| ++++|- |.+|+
T Consensus 618 ~e~v~~i~~~e~~dgVi~~~g~~~~~----~la~~le~~G--i~ilg~s~~ai~ 665 (1066)
T PRK05294 618 LEDVLEIIEKEKPKGVIVQFGGQTPL----KLAKALEAAG--VPILGTSPDAID 665 (1066)
T ss_pred HHHHHHHHHHcCCCEEEEEeCchhHH----HHHHHHHHCC--CceeCCCHHHHH
Confidence 567888899999999988 6766554 3445555555 577775 46765
No 180
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=38.98 E-value=55 Score=34.58 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred EEecCCCCCC-cchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHH
Q 011084 91 IVFCGRQSPG-GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV 169 (494)
Q Consensus 91 Il~sGG~aPG-~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~ 169 (494)
|+.+||-+.| ++.+ .+.+.+++..++.+++|.-++ .++..-++. .-++..+.-.|=...+..-+.-+ .-+
T Consensus 8 i~i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~---~m~~~g~~~-~~~~~~l~v~G~~~~l~~~~~~~---~~~ 78 (385)
T TIGR00215 8 IALVAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP---RMAAEGCEV-LYSMEELSVMGLREVLGRLGRLL---KIR 78 (385)
T ss_pred EEEEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH---HHHhCcCcc-ccChHHhhhccHHHHHHHHHHHH---HHH
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEE
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVV 213 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VI 213 (494)
.++.+.+++.+.|.+|.+||-+-+-..++-+. ..+++++
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~-----~~gip~v 117 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFNLTKELKKK-----DPGIKII 117 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHHHHHHHh-----hCCCCEE
No 181
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=38.59 E-value=1.4e+02 Score=32.28 Aligned_cols=51 Identities=24% Similarity=0.167 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~---~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++++.++++ +.|++||.=|-|||.-.+.+-.+..+ +.+.+||-.=
T Consensus 121 tp~~w~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l~-~~~kPVVlTG 174 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALKEGADGVVVAHGTDTMAYTAAALSFMFE-TLPVPVVLVG 174 (404)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEecCChhHHHHHHHHHHHhh-CCCCCEEEEC
Confidence 567777776666554 58999999999999875543333332 3345676543
No 182
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=38.53 E-value=3.6e+02 Score=25.82 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+...+.++.+...++|++++.+.+.+... ..+. .+.+.+ ++||.+
T Consensus 43 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~~-~~~~~~--ipvV~~ 87 (270)
T cd06308 43 SKQVADIENFIRQGVDLLIISPNEAAPLT-PVVE-EAYRAG--IPVILL 87 (270)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCchhhch-HHHH-HHHHCC--CCEEEe
Confidence 34456677788889999999876533111 2232 233344 677755
No 183
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=38.52 E-value=5.6e+02 Score=27.97 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=91.6
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
..+||.-. ||-=-+||.+.++.++.. +.-| .+|-|.+.|+.+ ||. |+ .|+
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY----TG----mtP 64 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALAN--DSPL--------------LIEATSNQVDQF---GGY----TG----MTP 64 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc----CC----CCH
Confidence 35677764 455558999888876532 3333 488899999988 775 22 245
Q ss_pred HHHH-HHHHHHHHcCCCE-EEEecCcc-------------hHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCC
Q 011084 167 EQVN-AALTACKNLNLDG-LVIIGGVT-------------SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETN 231 (494)
Q Consensus 167 e~~~-~~~~~l~~~~Id~-LviIGGd~-------------S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S 231 (494)
.+|. -+.+..++.+++. .+++|||- +|..|..|-+.+-+.|+ .-|++=.|++ ..++. ..
T Consensus 65 ~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--cagdp--~p 138 (426)
T PRK15458 65 ADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGF--KKIHLDCSMS--CADDP--IP 138 (426)
T ss_pred HHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--CCCCC--CC
Confidence 5555 4556678889998 99999973 57788888777777786 6788887777 44444 57
Q ss_pred cCchhHHHHHHHHHHHHHHHH
Q 011084 232 VGFDTICKVNSQLISNVCTDA 252 (494)
Q Consensus 232 ~GFdTA~~~~~~~I~nl~~da 252 (494)
+.-+|.++-.++++.-.-..+
T Consensus 139 L~d~~vA~Raa~L~~~aE~~a 159 (426)
T PRK15458 139 LTDEIVAERAARLAKIAEETC 159 (426)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 777899999998887554333
No 184
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=38.37 E-value=45 Score=34.11 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEeC
Q 011084 240 VNSQLISNVCTDALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 288 (494)
Q Consensus 240 ~~~~~I~nl~~da~S~~k~~~~VevMGR-~ag~lAl~~aLat~p~~ilIp 288 (494)
+++++-..+. +.+...+++.||=+||- |.||++|--.-...+|.++++
T Consensus 6 ti~~lr~~~~-~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVS 54 (285)
T COG0414 6 TIAELRQAIK-ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVVS 54 (285)
T ss_pred hHHHHHHHHH-HHHHcCCEEEEEcCCcccchHHHHHHHHHhhcCCeEEEE
Confidence 4444444444 66777888999999997 899999966655677777663
No 185
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=38.01 E-value=3e+02 Score=26.95 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=72.1
Q ss_pred ccCCCceeEecCccCCCccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCE-EEEEccchhhhhc-----
Q 011084 60 TYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST-LLGFLGGSEGLFA----- 133 (494)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~-v~Gf~~G~~GL~~----- 133 (494)
+...|.+-|..+.- .. -....|+||=+--+++=.-.+...+.+.+.+ .+.. |-|+-.|......
T Consensus 26 i~~~P~~Lf~~Gn~-------~l-l~~~~iaIvGsR~~s~~~~~~a~~l~~~l~~--~g~~IVSG~A~GiD~~ah~~al~ 95 (220)
T TIGR00732 26 IYDPPPVLFYKGDL-------PL-LSQRKVAIVGTRRPTKYGERWTRKLAEELAK--NGVTIVSGLALGIDGIAHKAALK 95 (220)
T ss_pred CCCCCceEEEECCc-------cc-ccCCeEEEEcCCCCCHHHHHHHHHHHHHHHh--CCCEEEcCchhhHHHHHHHHHHH
Confidence 34578888888851 11 1124677766555566556666666555532 2222 3344444444221
Q ss_pred --CCee------------ecCHhHHhcccccCCcccccccCCCCC---Ch---HHHHHHHHHHHHcCCCEEEEecC---c
Q 011084 134 --QKTL------------EVTKEILSTYKNQGGYDMLGRTKDQIR---TT---EQVNAALTACKNLNLDGLVIIGG---V 190 (494)
Q Consensus 134 --~~~i------------eLt~~~v~~~~n~GG~~~lgS~R~k~~---~~---e~~~~~~~~l~~~~Id~LviIGG---d 190 (494)
+..+ .=+++..+.+...||. +| |.- .+. .. -.+.+++..| =+++|+++. .
T Consensus 96 ~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~ggl-li-Se~-p~~~~~~~~~f~~RNriia~l----s~~vivve~~~~s 168 (220)
T TIGR00732 96 VNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGL-LL-SEY-PPDTKPIKYNFPKRNRIISGL----SRAVLVVEAPLKS 168 (220)
T ss_pred cCCCEEEEECCCCccCCchhhHHHHHHHHHcCCE-EE-Eec-CCCCCCCcccHHHHHHHHHHh----cCEEEEEECCCCC
Confidence 1111 1123345556667875 55 322 111 11 2344444333 377888887 3
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 011084 191 TSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (494)
Q Consensus 191 ~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDN 221 (494)
||+.+|. ++.+.| -+|..+|..+++
T Consensus 169 Gtl~ta~----~A~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 169 GALITAR----YALEQG--REVFAYPGDLNS 193 (220)
T ss_pred chHHHHH----HHHHhC--CcEEEEcCCCCC
Confidence 5665554 333344 589999988875
No 186
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=38.01 E-value=1.8e+02 Score=28.09 Aligned_cols=60 Identities=25% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd 235 (494)
+...+.++.+.+ ++|+++++..+.+... ..+ +.+.+.+ ++||.+ |++..+.+-..+++.|
T Consensus 46 ~~~~~~i~~~~~-~vdgiii~~~~~~~~~-~~i-~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d 105 (275)
T cd06307 46 AALAAALLRLGA-RSDGVALVAPDHPQVR-AAV-ARLAAAG--VPVVTL----VSDLPGSPRAGYVGID 105 (275)
T ss_pred HHHHHHHHHHHh-cCCEEEEeCCCcHHHH-HHH-HHHHHCC--CcEEEE----eCCCCCCceeeEEccC
Confidence 344566677888 9999999987643211 223 3344444 677744 5554332111345555
No 187
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=37.85 E-value=84 Score=33.75 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
..+++.++..|.+.++|.++||||--|. |..+|++-+++.+.++-.|-=|.=||-+
T Consensus 274 T~~RQ~A~~~La~~~vD~miVVGG~nSS-NT~rL~eia~~~g~~ty~Ie~~~eL~~~ 329 (387)
T PRK13371 274 TQERQDAMFSLVEEPLDLMVVIGGYNSS-NTTHLQEIAIERGIPSYHIDSPERILSG 329 (387)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHhcCCCEEEECCHHHcCCc
Confidence 4567777777776789999999999885 4467888888777666666666666653
No 188
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.83 E-value=2.9e+02 Score=24.99 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=64.1
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
+.+|-+.+.||+.=....-+.... ++ ..|.+|+-. | ..++.+++-.-...-..++++-|-....+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--lr--~~G~eVi~L-----G------~~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--LT--EAGFEVINL-----G------VMTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--HH--HCCCEEEEC-----C------CCCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 456777777777654443333322 21 246666521 1 33444433332222233456555433346
Q ss_pred hHHHHHHHHHHHHcCC-CEEEEecCcchHHH--HHHHHHHHHhcCCCCeEEEeeec
Q 011084 166 TEQVNAALTACKNLNL-DGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~I-d~LviIGGd~S~~~--A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
...+++.++.|++.+. +-.|++||.-+... .....+.+++.| +..|.-|.|
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G--~~~vf~~~~ 121 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG--FDRVFPPGT 121 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC--CCEEECcCC
Confidence 7788999999999977 66789999864321 344445566666 355555544
No 189
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.82 E-value=2e+02 Score=27.55 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+...+.++.+...++|++|+.+.+... ....+. .+.+.+ ++||.+
T Consensus 43 ~~~~~~~i~~l~~~~vdgvii~~~~~~~-~~~~l~-~~~~~~--ipvV~~ 88 (273)
T cd06310 43 VAGQVNLLENAIARGPDAILLAPTDAKA-LVPPLK-EAKDAG--IPVVLI 88 (273)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCChhh-hHHHHH-HHHHCC--CCEEEe
Confidence 4455677888888999999998876432 122332 333344 677776
No 190
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=37.68 E-value=2.2e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=30.5
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 184 LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 184 LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
|++|=||+...--..||+ +.+.| ++++.|-|+-|+.++.
T Consensus 1 ~~lIR~dn~~K~~~ALaD-leRh~-~l~i~gkPrii~p~~A 39 (107)
T PF04009_consen 1 LILIRADNYDKILNALAD-LERHG-GLKIRGKPRIIPPEYA 39 (107)
T ss_pred CeEEecCCHHHHHHHHHH-HHHhc-CCeEecCCcccChHHH
Confidence 577888888777777876 44455 6899999999998874
No 191
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=37.66 E-value=4.8e+02 Score=26.93 Aligned_cols=107 Identities=13% Similarity=-0.029 Sum_probs=63.6
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
..+|+++......|=...+..|+-+++++. +.++. +.+... . +
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~--G~~v~--------------------------------~~~~~~--~-d 65 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKEL--GVDVT--------------------------------YDGPTE--P-S 65 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHh--CCEEE--------------------------------EECCCC--C-C
Confidence 458999999888899999999998887643 22222 001111 1 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA 237 (494)
.+...+.++.+...++|++++..-|.. .-...|. .+.+.| |+||. +|.|+..+.....+|.++.
T Consensus 66 ~~~q~~~i~~li~~~vdgIiv~~~d~~-al~~~l~-~a~~~g--IpVV~----~d~~~~~~~~~~~V~~~~~ 129 (336)
T PRK15408 66 VSGQVQLINNFVNQGYNAIIVSAVSPD-GLCPALK-RAMQRG--VKVLT----WDSDTKPECRSYYINQGTP 129 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHHH-HHHHCC--CeEEE----eCCCCCCccceEEEecCCH
Confidence 233347788899999999999865433 2223333 233444 78875 5666543322234554443
No 192
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=37.61 E-value=3.6e+02 Score=25.55 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=52.6
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
||||+.+-+.|-...++.|+-+.+++. +..+. +..+.. .+.+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~--~~~~~--------------------------------~~~~~~---~~~~~ 44 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREA--GYAVT--------------------------------LSMLAE---ADEEA 44 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHC--CCeEE--------------------------------EEeCCC---CchHH
Confidence 788888877787888888888877643 22222 111111 11244
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
..+.++.+.+.++||+++.+-+.+.. + +.+ +.+.+ ++||.+=
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~--ipvv~~~ 86 (264)
T cd01574 45 LRAAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPAD--VPVVFVD 86 (264)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcC--CCEEEEe
Confidence 56678888899999999988765543 2 222 23344 6777663
No 193
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=37.53 E-value=93 Score=29.68 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=51.8
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
||++..+-..|....++.|+-+++.+. +..+.-+. +.. +.+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~~---~~~~ 43 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAA--GYQLLLGN---------------------------------TGY---SPER 43 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHc--CCEEEEec---------------------------------CCC---Cchh
Confidence 788888777888888888888776532 23322111 111 2234
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
..+.++.+...++||+++.+-+.+. . .+ +.+.+. +++||.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~-~--~~-~~~~~~--~ipvv~~ 84 (268)
T cd01575 44 EEELLRTLLSRRPAGLILTGLEHTE-R--TR-QLLRAA--GIPVVEI 84 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCH-H--HH-HHHHhc--CCCEEEE
Confidence 4577788888999999999877552 1 12 222333 4788877
No 194
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=37.28 E-value=39 Score=32.01 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 176 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 176 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
+++++.|++|+-||.++-.......+.++....+++|+|| |+|+..-+..
T Consensus 39 ~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI---------------C~G~Qlla~~ 88 (191)
T PRK06774 39 IEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV---------------CLGHQALGQA 88 (191)
T ss_pred HHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE---------------CHHHHHHHHH
Confidence 5667899999999999865542222222211225778875 8888765554
No 195
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=37.20 E-value=3.5e+02 Score=27.90 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDN 221 (494)
+..++...++.+.+.+|.-||-.+|..++ ||-+++..|++ .+|.+|.+.+.
T Consensus 52 ~~~~l~~a~~~g~~~vvt~g~s~gN~g~a-lA~~a~~~G~~-~~i~vp~~~~~ 102 (331)
T PRK03910 52 LEFLLADALAQGADTLITAGAIQSNHARQ-TAAAAAKLGLK-CVLLLENPVPT 102 (331)
T ss_pred HHHHHHHHHHcCCCEEEEcCcchhHHHHH-HHHHHHHhCCc-EEEEEcCCCCc
Confidence 34445656677888898777655666544 66677777875 55669988774
No 196
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=36.37 E-value=1.9e+02 Score=26.62 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHc-CCCE
Q 011084 105 VWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL-NLDG 183 (494)
Q Consensus 105 I~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~-~Id~ 183 (494)
...+++.+.+. +++=+++..+... ...........+.+...|.. +.........+++.++.+.+.+++. +.++
T Consensus 112 ~~~~~~~l~~~--~~~~i~~i~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (269)
T cd01391 112 GEAAAEYLAEK--GWKRVALIYGDDG---AYGRERLEGFKAALKKAGIE-VVAIEYGDLDTEKGFQALLQLLKAAPKPDA 185 (269)
T ss_pred HHHHHHHHHHh--CCceEEEEecCCc---chhhHHHHHHHHHHHhcCcE-EEeccccCCCccccHHHHHHHHhcCCCCCE
Confidence 35555665543 3555666654332 11111111122233344433 4333222332335678888888887 7898
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCC---CCeEEEeeec
Q 011084 184 LVIIGGVTSNTDAAYLAETFAEAKC---PTKVVGVPVT 218 (494)
Q Consensus 184 LviIGGd~S~~~A~~Lae~~~~~~~---~i~VIgVPkT 218 (494)
+++.+. ..+..+.+.+.+.|. ++.+++.--+
T Consensus 186 i~~~~~----~~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 186 IFACND----EMAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred EEEcCc----hHHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 888665 233444455555554 5777765433
No 197
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=36.34 E-value=59 Score=28.97 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 171 ~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+++.....++|.+|++.||+-+.-+.. .++++|..+-|++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~---~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVE---RLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHH---HHHHcCCEEEEEccC
Confidence 4556666679999999999998777653 344568777777777
No 198
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=35.34 E-value=63 Score=32.41 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=51.1
Q ss_pred CHhHHhcccccCCccccc--ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHH------------HHHHHHHHHHh
Q 011084 140 TKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNT------------DAAYLAETFAE 205 (494)
Q Consensus 140 t~~~v~~~~n~GG~~~lg--S~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~------------~A~~Lae~~~~ 205 (494)
+......+++.+|...+- ++|.. +..+++..+..+..+||+.+++++||-.-. .|..|-+..++
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 46 TLLAAARILQEGGIEPIPHLTCRDR--NRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred HHHHHHHHHHhcCCCeeeecccCCC--CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 445566677777654332 35543 468899999999999999999998876533 47777777766
Q ss_pred c---CCCCeEEEee
Q 011084 206 A---KCPTKVVGVP 216 (494)
Q Consensus 206 ~---~~~i~VIgVP 216 (494)
. +..+.|.+-|
T Consensus 124 ~~~~~~~igva~yP 137 (274)
T cd00537 124 ENGGGFSIGVAAYP 137 (274)
T ss_pred hcCCCCccccccCC
Confidence 4 3344444445
No 199
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=34.66 E-value=3.3e+02 Score=26.89 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+.....++.+...++|++++.+-+.+ .....+ +.+.+.+ ++||.+
T Consensus 42 ~~~q~~~i~~l~~~~vdgiIi~~~~~~-~~~~~l-~~~~~~g--iPvV~~ 87 (302)
T TIGR02637 42 AEGQIEVVNSLIAQKVDAIAISANDPD-ALVPAL-KKAMKRG--IKVVTW 87 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChH-HHHHHH-HHHHHCC--CEEEEe
Confidence 344456788888999999999876422 112223 3344444 688854
No 200
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.39 E-value=2e+02 Score=27.66 Aligned_cols=90 Identities=21% Similarity=0.130 Sum_probs=54.0
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
|||++..-..|-...++.|+-+.+++. +.++. +..+. .+++.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQY--GYTVL---------------------------------LCNTY---RGGVS 43 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---CChHH
Confidence 788887777788888888888877542 22221 10111 12345
Q ss_pred HHHHHHHHHHcCCCEEEEecCcch-H-HHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTS-N-TDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S-~-~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
..+.++.+...++|++++.+..-. . ..+..+. .+.+.+ ++||.+=...
T Consensus 44 ~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~-~~~~~~--ipvV~i~~~~ 93 (273)
T cd06292 44 EADYVEDLLARGVRGVVFISSLHADTHADHSHYE-RLAERG--LPVVLVNGRA 93 (273)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHH-HHHhCC--CCEEEEcCCC
Confidence 567889999999999999985422 1 1222332 333344 6787653333
No 201
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=33.39 E-value=3.6e+02 Score=27.90 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEE
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVV 213 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VI 213 (494)
...+++..++.+++.|+..||-.+|...+ ||-+++..|+++.|+
T Consensus 55 ~~~~l~~a~~~G~~~vvs~G~s~GN~g~a-lA~aa~~~G~~~~iv 98 (337)
T PRK12390 55 LEYLVPDALAQGADTLVSIGGVQSNHTRQ-VAAVAAHLGMKCVLV 98 (337)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHH-HHHHHHHcCCeEEEE
Confidence 45666667789999999999988888765 677888888865444
No 202
>PRK08445 hypothetical protein; Provisional
Probab=33.35 E-value=4.3e+02 Score=27.71 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=69.1
Q ss_pred EEEecCCCCCCcch-hHHHHHHHHHhhCCCCEEEEEccc-hhhhhcCCeeecC-HhHHhcccccCCcc------cccccC
Q 011084 90 GIVFCGRQSPGGHN-VVWGLYDALKLHNPKSTLLGFLGG-SEGLFAQKTLEVT-KEILSTYKNQGGYD------MLGRTK 160 (494)
Q Consensus 90 gIl~sGG~aPG~n~-vI~gl~~~~~~~~~~~~v~Gf~~G-~~GL~~~~~ieLt-~~~v~~~~n~GG~~------~lgS~R 160 (494)
-|+++||..|...- -+..+++.+++..|.-++.++-.+ ..=+.+ .-.++ ++.+..++..|=.. -+++.+
T Consensus 92 ~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~--~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~ 169 (348)
T PRK08445 92 QILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAK--ISKISIKEVLERLQAKGLSSIPGAGAEILSDR 169 (348)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHH--HhCCCHHHHHHHHHHcCCCCCCCCceeeCCHH
Confidence 45888998887443 457788888888888898887654 111111 00112 44555555443221 222211
Q ss_pred ------CCCCChHHHHHHHHHHHHcCCC--EEEEecCcchHHHHHHHHHHHHhc
Q 011084 161 ------DQIRTTEQVNAALTACKNLNLD--GLVIIGGVTSNTDAAYLAETFAEA 206 (494)
Q Consensus 161 ------~k~~~~e~~~~~~~~l~~~~Id--~LviIGGd~S~~~A~~Lae~~~~~ 206 (494)
.+.-+.+++-++++.++++||. +-+++|=.+|...-...+..+++.
T Consensus 170 v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreL 223 (348)
T PRK08445 170 VRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDL 223 (348)
T ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHH
Confidence 1233566778999999999865 567888888876655555555543
No 203
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=33.25 E-value=1.3e+02 Score=29.29 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+...+.++.+...++|++++.+.+.... . .+. ++.++| ++||.+
T Consensus 43 ~~~~~~~i~~~~~~~vdgiI~~~~~~~~~-~-~~~-~~~~~g--iPvV~~ 87 (268)
T cd06306 43 LAKQIAQLEDCAAWGADAILLGAVSPDGL-N-EIL-QQVAAS--IPVIAL 87 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCChhhH-H-HHH-HHHHCC--CCEEEe
Confidence 34455678888899999999987653322 2 333 334444 677765
No 204
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=33.20 E-value=47 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHH
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAA 197 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~ 197 (494)
+..++.+.+++++|| ++.||+.|+..|+
T Consensus 11 ~~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 11 EDPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred HChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 345778999999999 6899999987765
No 205
>PRK11096 ansB L-asparaginase II; Provisional
Probab=33.17 E-value=98 Score=32.68 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHH--cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKN--LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~--~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++++.++.+.+++ .+.|++||.-|-|||...+.+-.+.. +.+.+||-.
T Consensus 83 t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~Ls~~~--~~~kPVVlT 133 (347)
T PRK11096 83 NDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTV--KCDKPVVLV 133 (347)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHHHHhc--cCCCCEEEe
Confidence 56777777777766 57999999999999988665444443 334555543
No 206
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.16 E-value=3.6e+02 Score=25.78 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=46.5
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
+|||+...-+.|=...++.|+.+.+++. +.++. +..+. .+++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKAL--GYDAV---------------------------------ELSAE---NSAK 42 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhc--CCeEE---------------------------------EecCC---CCHH
Confidence 4777776666666777777777766532 22221 10110 1233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
....+++.+...++|++|+.+.+ +-.....| +.+.+.+ ++||.+
T Consensus 43 ~~~~~i~~~~~~~~dgiii~~~~-~~~~~~~l-~~~~~~~--ipvV~~ 86 (277)
T cd06319 43 KELENLRTAIDKGVSGIIISPTN-SSAAVTLL-KLAAQAK--IPVVIA 86 (277)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCc-hhhhHHHH-HHHHHCC--CCEEEE
Confidence 34466677777899999876544 32222223 3333444 677754
No 207
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=32.91 E-value=86 Score=33.86 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTID 220 (494)
+...|.++.++.+.... |.++|.||||+.... +.--|++++-..+|--+|---|
T Consensus 101 d~~gqak~l~e~~~t~~-Dii~VaGGDGT~~eV--VTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 101 DNQGQAKALAEAVDTQE-DIIYVAGGDGTIGEV--VTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred CcHHHHHHHHHHhccCC-CeEEEecCCCcHHHh--hHHHHhcccccCceeeccCccc
Confidence 34567777777777666 999999999997653 3445555555677777775555
No 208
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=32.89 E-value=44 Score=34.30 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
..+++.++..|. ...|.++||||-.|.- ..+|++-+++.+.++-.|-=|.=||-|
T Consensus 196 T~~RQ~a~~~La-~~vD~miVVGg~~SsN-T~rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 196 TKKRQESAKELS-KEVDVMIVIGGKHSSN-TQKLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hhhHHHHHHHHH-HhCCEEEEecCCCCcc-HHHHHHHHHHHCCCEEEECChHHCCHH
Confidence 345666666663 5799999999998853 466888887777556666666666543
No 209
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=32.68 E-value=90 Score=32.32 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC-CCCC-CCCCCcCchhHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQ-FVETNVGFDTICKVNSQL 244 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND-l~~~-~ie~S~GFdTA~~~~~~~ 244 (494)
.+++.++..|-+ ..|.++||||-.|. |..+|++-+++.+.++-.|-=+.=||-+ +.+. -|-.|=|-.|=-..+-+.
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~Ss-NT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNSS-NSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-cHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 456666666654 79999999999985 4467888887777666666666666633 2222 122344555555555555
Q ss_pred HHHH
Q 011084 245 ISNV 248 (494)
Q Consensus 245 I~nl 248 (494)
+..|
T Consensus 276 ~~~l 279 (298)
T PRK01045 276 IARL 279 (298)
T ss_pred HHHH
Confidence 5544
No 210
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=32.63 E-value=4e+02 Score=24.58 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
++++++++++.+.+- +-++++|-..|...|..++..+...| +++..++
T Consensus 19 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g--~~~~~~~ 66 (179)
T cd05005 19 DEEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRLMHLG--LNVYVVG 66 (179)
T ss_pred CHHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHHHhCC--CeEEEeC
Confidence 578899999988765 67888887778777777777665545 4555554
No 211
>PLN02335 anthranilate synthase
Probab=32.50 E-value=65 Score=31.53 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHH
Q 011084 176 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239 (494)
Q Consensus 176 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~ 239 (494)
+..++.|++|+-||-++-......-+..++.+-+++|.|| |+||.--+.
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI---------------ClG~QlLa~ 106 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV---------------CMGLQCIGE 106 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe---------------cHHHHHHHH
Confidence 3456899999999999876643333444444445777764 999985444
No 212
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=32.14 E-value=3.6e+02 Score=25.92 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+...+.++.+...++|++++...+. ......+.+ +.+ +++||.+
T Consensus 42 ~~~~~~i~~l~~~~vDgiIi~~~~~-~~~~~~l~~-~~~---~ipvV~~ 85 (271)
T cd06314 42 NAQLRMLEDLIAEGVDGIAISPIDP-KAVIPALNK-AAA---GIKLITT 85 (271)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCh-hHhHHHHHH-Hhc---CCCEEEe
Confidence 4455777788999999999997652 212233333 332 4678875
No 213
>PRK04155 chaperone protein HchA; Provisional
Probab=32.07 E-value=4.4e+02 Score=27.05 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=25.3
Q ss_pred HHHHHHHHH--HcCCCEEEEecCcchHHH------HHHHHHHHHhcC
Q 011084 169 VNAALTACK--NLNLDGLVIIGGVTSNTD------AAYLAETFAEAK 207 (494)
Q Consensus 169 ~~~~~~~l~--~~~Id~LviIGGd~S~~~------A~~Lae~~~~~~ 207 (494)
++.+.+.+. ..+.|++|+-||-+.+.. ...|.+.|.+++
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~ 180 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND 180 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC
Confidence 444444444 468899999999887654 344555565555
No 214
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.84 E-value=1.2e+02 Score=28.90 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd 235 (494)
..+.++.+...++|++++.+.+.+- ..+ +.+.+.+ ++||.+ |.+.....+ .++|+|
T Consensus 43 ~~~~i~~~~~~~vdgiii~~~~~~~---~~~-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 98 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTLSS---ELA-EECRRNG--IPVVLI----NRYVDGPGV-DAVCSD 98 (266)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCH---HHH-HHHhhcC--CCEEEE----CCccCCCCC-CEEEEC
Confidence 3456677888999999998876432 122 3333344 688876 444332222 456666
No 215
>PRK07094 biotin synthase; Provisional
Probab=31.81 E-value=5.7e+02 Score=26.03 Aligned_cols=105 Identities=18% Similarity=0.113 Sum_probs=63.5
Q ss_pred EEecCCCCCCc-chhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCccccc------ccC---
Q 011084 91 IVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG------RTK--- 160 (494)
Q Consensus 91 Il~sGG~aPG~-n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lg------S~R--- 160 (494)
|.++||..|-. ..-+..+++.+++. ++..+- +.-| .++++.++.++..|= +.+. +.+
T Consensus 90 i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~-~~~g----------~~~~e~l~~Lk~aG~-~~v~~glEs~~~~~~~ 156 (323)
T PRK07094 90 IVLQSGEDPYYTDEKIADIIKEIKKE-LDVAIT-LSLG----------ERSYEEYKAWKEAGA-DRYLLRHETADKELYA 156 (323)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHcc-CCceEE-EecC----------CCCHHHHHHHHHcCC-CEEEeccccCCHHHHH
Confidence 44557765543 35567777777643 333221 2111 256777777777652 2211 100
Q ss_pred --CCCCChHHHHHHHHHHHHcCC--CEEEEecC-cchHHHHHHHHHHHHhcCC
Q 011084 161 --DQIRTTEQVNAALTACKNLNL--DGLVIIGG-VTSNTDAAYLAETFAEAKC 208 (494)
Q Consensus 161 --~k~~~~e~~~~~~~~l~~~~I--d~LviIGG-d~S~~~A~~Lae~~~~~~~ 208 (494)
.+-.+.+++.++++.++++++ ..-+++|- ..+........+++++.+.
T Consensus 157 ~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 157 KLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDL 209 (323)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 122367888999999999998 56678885 6677777777777776664
No 216
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.60 E-value=82 Score=31.55 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=68.0
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
..||||+.--.-|=--.++.|+-+.+++. +..+ +|..+.. +
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~--Gy~l---------------------------------~l~~t~~---~- 42 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREH--GYQL---------------------------------LLCNTGD---D- 42 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHT--TCEE---------------------------------EEEEETT---T-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHc--CCEE---------------------------------EEecCCC---c-
Confidence 36888887777777777788888777543 2222 2222221 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~ 246 (494)
++.++.++.|.+.++||+|+.+-..+...-..+.+ . ++|||.+=.+.+++.. . .|+..|- .+...++..
T Consensus 43 ~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~--~--~~V~~D~-~~a~~~a~~ 111 (279)
T PF00532_consen 43 EEKEEYIELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEG--V--PSVYIDN-YEAGYEATE 111 (279)
T ss_dssp HHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCT--S--CEEEEEH-HHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCccc--C--CEEEEcc-hHHHHHHHH
Confidence 22338889999999999999976666344333332 2 5899988877777621 1 3566662 222224444
Q ss_pred HHH
Q 011084 247 NVC 249 (494)
Q Consensus 247 nl~ 249 (494)
.|.
T Consensus 112 ~Li 114 (279)
T PF00532_consen 112 YLI 114 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 217
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=31.44 E-value=1e+02 Score=31.69 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTID 220 (494)
..+++.++..|-+ .+|.++||||-.|. |..+|++-+++.+.++-.|-=+.=||
T Consensus 195 T~~RQ~a~~~la~-~vD~miVVGg~nSs-NT~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 195 TQNRQDAVKELAP-EVDLMIVIGGKNSS-NTTRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred cHHHHHHHHHHHh-hCCEEEEECCCCCc-hHHHHHHHHHHhCCCEEEECChHHCC
Confidence 3456666666644 59999999999885 44678888877775444444444443
No 218
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=30.97 E-value=1.5e+02 Score=30.68 Aligned_cols=102 Identities=23% Similarity=0.282 Sum_probs=61.9
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+...||++..--..|=-..++.|+-+.+.+. +.. -+|..+..
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~--gy~---------------------------------~~l~~~~~--- 98 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREA--GYS---------------------------------LLLANTDD--- 98 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCE---------------------------------EEEECCCC---
Confidence 4567888877555566666777777766432 211 24444444
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd 235 (494)
+++..+++++.+...++||+|+.|-...-.....+ .+.+ +++|.+=.+.+ |.. . .|+++|
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l----~~~~--~P~V~i~~~~~-~~~--~--~~V~~D 158 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLGERPNDSLLELL----AAAG--IPVVVIDRSPP-GLG--V--PSVGID 158 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHH----HhcC--CCEEEEeCCCc-cCC--C--CEEEEC
Confidence 46778899999999999999999922222222233 2334 67776655544 222 1 466666
No 219
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=30.94 E-value=2.3e+02 Score=29.02 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=34.3
Q ss_pred CChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEc
Q 011084 48 ADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL 125 (494)
Q Consensus 48 ~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~ 125 (494)
.+.+++++.|..+...-.+.+. .....+++||+|+.||+ | .-..+++++.+...-+.+|.++.
T Consensus 61 ~~~~~L~~~L~~l~~~l~l~i~----------l~~~~~~~ri~vl~Sg~---g--snl~al~~~~~~~~~~~~i~~vi 123 (286)
T PRK06027 61 FNLETLRADFAALAEEFEMDWR----------LLDSAERKRVVILVSKE---D--HCLGDLLWRWRSGELPVEIAAVI 123 (286)
T ss_pred CCHHHHHHHHHHHHHHhCCEEE----------EcccccCcEEEEEEcCC---C--CCHHHHHHHHHcCCCCcEEEEEE
Confidence 3456777777666433222222 12234678999999999 2 22445555544322345555544
No 220
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=30.82 E-value=4e+02 Score=26.97 Aligned_cols=103 Identities=22% Similarity=0.246 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcE-EEeCCcchhhcccHHHHHHHHHHHHHH
Q 011084 234 FDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNM-VILGEEVAASKLTLFDLTKQICDAVQA 311 (494)
Q Consensus 234 FdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~-p~~-ilIpEe~~~~~~tL~~i~~~i~~~i~~ 311 (494)
|+-|++.++...+-| +.++. |.+ +.|+..+--..-+-|+++ .+. ++-++ ..++.++.|.-+++...+.+
T Consensus 13 f~~ai~hi~ri~RvL-----~~~~G-h~L-LvG~~GsGr~sl~rLaa~i~~~~~~~i~--~~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 13 FDEAIEHIARISRVL-----SQPRG-HAL-LVGVGGSGRQSLARLAAFICGYEVFQIE--ITKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp -HHHHHHHHHHHHHH-----CSTTE-EEE-EECTTTSCHHHHHHHHHHHTTEEEE-TT--TSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----cCCCC-CeE-EecCCCccHHHHHHHHHHHhccceEEEE--eeCCcCHHHHHHHHHHHHHH
Confidence 566666666655444 23443 455 566654443333445543 222 22233 24567888887887777655
Q ss_pred HHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCC
Q 011084 312 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGV 350 (494)
Q Consensus 312 R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~ 350 (494)
---+|+ -.+.++.+--+.. ..++..+|.+++.|.
T Consensus 84 ag~~~~-~~vfll~d~qi~~----~~fLe~in~LL~sGe 117 (268)
T PF12780_consen 84 AGIKGK-PTVFLLTDSQIVD----ESFLEDINSLLSSGE 117 (268)
T ss_dssp HHCS-S--EEEEEECCCSSS----CHHHHHHHHHHHCSS
T ss_pred HhccCC-CeEEEecCcccch----HhHHHHHHHHHhCCC
Confidence 443444 4455555543321 256778899998875
No 221
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.57 E-value=2.2e+02 Score=34.70 Aligned_cols=102 Identities=20% Similarity=0.154 Sum_probs=54.0
Q ss_pred CceEEEEEecCCCCCCcc----hhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC
Q 011084 85 PAIRVGIVFCGRQSPGGH----NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n----~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
.+++|.|+=+|..--|-. -+...+++++++ .+.+++.+-.-++.+- ++.--+.|
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~--~G~~vI~vn~npetvs--------------------~~~~~aD~ 611 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKK--EGYETIMINNNPETVS--------------------TDYDTADR 611 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHH--cCCEEEEEeCCccccc--------------------cccccCce
Confidence 467887776663222211 133444556654 3778887665443211 11101111
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEe-cCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 161 DQIRTTEQVNAALTACKNLNLDGLVII-GGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 161 ~k~~~~e~~~~~~~~l~~~~Id~LviI-GGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.-+ .+...+.+++.+++.++|+++.- ||. + +..+++.+.+.| ++++|-
T Consensus 612 ~y~-ep~~~e~vl~I~~~e~~dgVI~~~g~~-~---~~~la~~le~~G--i~ilG~ 660 (1068)
T PRK12815 612 LYF-EPLTLEDVLNVAEAENIKGVIVQFGGQ-T---AINLAKGLEEAG--LTILGT 660 (1068)
T ss_pred EEE-ccCCHHHHHHHHhhcCCCEEEEecCcH-H---HHHHHHHHHHCC--CeEECC
Confidence 111 12236788889999999999874 444 2 344555555555 566654
No 222
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=30.39 E-value=4.1e+02 Score=23.98 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEec-CcchHHHHHHHHHHHHhcCCC
Q 011084 165 TTEQVNAALTACKNLN---LDGLVIIG-GVTSNTDAAYLAETFAEAKCP 209 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~---Id~LviIG-Gd~S~~~A~~Lae~~~~~~~~ 209 (494)
+.+.+.++++.+++++ +...+++| ++++......+.+++.+.+..
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPD 182 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4578888999999999 45556666 346788888888888777654
No 223
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=30.30 E-value=39 Score=31.63 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCC
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFV 228 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~i 228 (494)
.++.+++.++.. .+-++||||-.-+..+..+++ .+-+--|+++.+.|...+.+
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP~~ 131 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFPEI 131 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECSSC
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECCCC
Confidence 467777766655 899999999998887766443 46778889999999887764
No 224
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.02 E-value=2.2e+02 Score=34.64 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=60.0
Q ss_pred CCceEEEEEecCCCCCC----cchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCccccccc
Q 011084 84 HPAIRVGIVFCGRQSPG----GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRT 159 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG----~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~ 159 (494)
...+||.|+-||+..-| .-..-..+.+++++ .|.+|+.+..-+.....+. ...+ .
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np~~~~~d~------~~ad-------------~ 63 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNPATIMTDP------APAD-------------T 63 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCcchhhcCc------ccCC-------------e
Confidence 34679999998854333 22233445566653 4789988864432221110 0000 0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHH--HHHhcCCCCeEEEee
Q 011084 160 KDQIRTTEQVNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAE--TFAEAKCPTKVVGVP 216 (494)
Q Consensus 160 R~k~~~~e~~~~~~~~l~~~~Id~Lvi-IGGd~S~~~A~~Lae--~~~~~~~~i~VIgVP 216 (494)
.+ + .+-..+.+.+.|++.++|+++. +||......+..|++ .+++.| ++++|.+
T Consensus 64 ~y-~-ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~g--v~l~g~~ 119 (1068)
T PRK12815 64 VY-F-EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYG--VELLGTN 119 (1068)
T ss_pred eE-E-CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCC--CEEECCC
Confidence 00 0 1112356677789999999985 578777777766664 344444 5666644
No 225
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=29.74 E-value=2.9e+02 Score=26.36 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
++...+.++.+...++|++++++.+.+..... .+++.+ ++||.+
T Consensus 41 ~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~----~l~~~~--iPvv~~ 84 (268)
T cd06273 41 LDREYAQARKLLERGVDGLALIGLDHSPALLD----LLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH----HHHhCC--CCEEEE
Confidence 34445667778888999999998764432222 333344 788875
No 226
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=29.67 E-value=1.4e+02 Score=30.11 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCEEEEe-----cCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 171 AALTACKNLNLDGLVII-----GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 171 ~~~~~l~~~~Id~LviI-----GGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
.+++.+-..|.|-.|.| +|-|+..+|..|++++++.++++-+.| =.|+|+|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G-~~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCG-DGSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEc-CccccCCCC
Confidence 55666778899988877 466999999999999998887766666 478888764
No 227
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=29.32 E-value=3.3e+02 Score=26.74 Aligned_cols=112 Identities=18% Similarity=0.058 Sum_probs=59.2
Q ss_pred EEEEEecCCC-CCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 88 RVGIVFCGRQ-SPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 88 ~IgIl~sGG~-aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
||+++..-.+ ..|+..+++.+.+.+.+......++....+........ ..++...+ .+. ..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~-------------~~~~~~~~--~~~---~~ 62 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG-------------EQEVVRVI--VLD---NP 62 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC-------------cccceeee--ecC---Cc
Confidence 5788877766 67999999999999876554444544433222111100 00111011 111 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHH--HHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNT--DAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~--~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
..+..+.+.+++.+.|.+++--..+... ....+.... +..++++|...-..
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~h~~ 115 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLL--RGLGIPVVVTLHTV 115 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHH--hhcCCCEEEEEecC
Confidence 3455677788899999877754333221 111221111 23357888776554
No 228
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=29.31 E-value=91 Score=31.48 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=40.4
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchH----------HHHHHHHHHHHhc--CCCCeEEEee
Q 011084 158 RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN----------TDAAYLAETFAEA--KCPTKVVGVP 216 (494)
Q Consensus 158 S~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~----------~~A~~Lae~~~~~--~~~i~VIgVP 216 (494)
++|.. +..+++..+..+..+||+.+++++||-+. ..|..|-+..++. .+.+-+.+.|
T Consensus 66 t~r~~--n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P 134 (272)
T TIGR00676 66 TCIGA--TREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYP 134 (272)
T ss_pred eecCC--CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence 46652 67889999999999999999999999872 3466666666654 2333444444
No 229
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.24 E-value=1.3e+02 Score=26.31 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 214 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIg 214 (494)
.++....+++.|.++++.+++++.|.. ...+.+.+++.| ++++|
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~----~~~~~~~a~~~g--i~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAE----SEELIEAAREAG--IRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS------HHHHHHHHHTT---EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchH----HHHHHHHHHHcC--CEEEe
Confidence 467888999999999999999999922 233444555555 67776
No 230
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=29.00 E-value=1.7e+02 Score=30.41 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~--~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.+..+. ..+||-.
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~~--~kPVVlT 111 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLEN--DKPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhcC--CCCEEEE
Confidence 567777777766553 699999999999998866544444433 4566654
No 231
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=28.97 E-value=2.9e+02 Score=28.23 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=21.7
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEc
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL 125 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~ 125 (494)
.+++||+|+.||. ++| ...++++.+.-.-..+|..+.
T Consensus 82 ~~~~ki~vl~Sg~----g~n-l~~l~~~~~~g~l~~~i~~vi 118 (280)
T TIGR00655 82 DKLKRVAILVSKE----DHC-LGDLLWRWYSGELDAEIALVI 118 (280)
T ss_pred CCCcEEEEEEcCC----Chh-HHHHHHHHHcCCCCcEEEEEE
Confidence 3568999999998 333 445556554322234555544
No 232
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=28.46 E-value=4.6e+02 Score=26.63 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=53.2
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
++++||++...-.-|..+.++.|+.+.+++.. +..+ ++..+. .
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~---------------------------------~~~~~~---~ 65 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQL---------------------------------LMNDSQ---N 65 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEE---------------------------------EEecCC---C
Confidence 34678888876666777777777777664321 1111 111111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+.+...+.++.+...++|++++.+.+..... ..+ +.+++.+ ++||.+=..
T Consensus 66 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~g--iPvV~vd~~ 115 (330)
T PRK15395 66 DQSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQD--VPVVFFNKE 115 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCC--CcEEEEcCC
Confidence 2333345677799999999999987643332 233 3344444 677776443
No 233
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=28.37 E-value=36 Score=29.95 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 011084 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (494)
Q Consensus 171 ~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDN 221 (494)
.+.+.+.+...|.+|++-||+-+.-+. +.++++|.++-|++.|.....
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s~ 133 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSASE 133 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-H
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCCH
Confidence 344445445679999999998877654 445567877788886444433
No 234
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.27 E-value=1.4e+02 Score=26.96 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCC-CEEEEecCcc---hHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 143 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVT---SNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 143 ~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~I-d~LviIGGd~---S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
.++..... ..+++|-|----.+.+.++++.+.|++.++ +..|++||.- +.+.+... +.+++.|+ .-+.=|.|
T Consensus 42 ~v~aa~~~-~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~-~~L~~~Gv--~~vf~pgt 117 (128)
T cd02072 42 FIDAAIET-DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVE-KRFKEMGF--DRVFAPGT 117 (128)
T ss_pred HHHHHHHc-CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHH-HHHHHcCC--CEEECcCC
Confidence 44444444 336777655444467889999999999999 8889999984 33332222 33445564 34444443
No 235
>PRK07591 threonine synthase; Validated
Probab=28.04 E-value=1.9e+02 Score=31.17 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC------CCCCCCCCCcC-chhHHHHHH
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD------LKNQFVETNVG-FDTICKVNS 242 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND------l~~~~ie~S~G-FdTA~~~~~ 242 (494)
.-++..+++.+.+.++ .+..| |+ +..||-|+...|++ .+|.||.++... ..|-.+...-| ||.|.+...
T Consensus 126 ~~~v~~A~~~g~~~vv-~aSsG-N~-g~alA~~aa~~Gl~-~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~ 201 (421)
T PRK07591 126 SVALTAARELGFTTVA-CASTG-NL-ANSVAAHAARAGLD-SCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCS 201 (421)
T ss_pred HHHHHHHHHcCCCEEE-EeCCC-HH-HHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHH
Confidence 3445567778888875 44333 44 44577788888886 677799876521 11222222222 565555554
Q ss_pred HHHHHH-HHHHhhccCceEEEEecCCCccHHHHHhhhhcC---CcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcC--
Q 011084 243 QLISNV-CTDALSAEKYYYFIRLMGRRASHVALECTLQSH---PNMVILGEEVAASKLTLFDLTKQICDAVQARAEQD-- 316 (494)
Q Consensus 243 ~~I~nl-~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~---p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~g-- 316 (494)
+...+. ..-..+....-|++| | .+.++.|..-|.+ ||.+++|=--. -+ .--+...+++..+.|
T Consensus 202 ~~~~~~~~~~~~n~~~~p~~ie--G--~~Tia~Ei~eQl~~~~pD~iv~pvG~G---g~----~~Gv~~g~kel~~~g~i 270 (421)
T PRK07591 202 ELANEHEGWGFVNINLRPYYAE--G--SKTLGYEVAEQLGWRLPDQVVAPLASG---SL----LTKIDKGFQELIKVGLV 270 (421)
T ss_pred HHHHhcCCEEEecCCCCccccc--c--hHHHHHHHHHHcCCCCCCEEEEeCCch---HH----HHHHHHHHHHHHhcCCc
Confidence 443321 000000001123333 2 2457899998864 89999985421 22 333344554433221
Q ss_pred --C-CeEEEEEeCCCC
Q 011084 317 --K-NHGVILLPEGLI 329 (494)
Q Consensus 317 --k-~~gvVlv~EGl~ 329 (494)
+ -..+.+=|||..
T Consensus 271 ~~~~prii~Vq~~g~~ 286 (421)
T PRK07591 271 EDKPVRVFGAQAEGCS 286 (421)
T ss_pred cCCCceEEEEecCCCC
Confidence 2 356777788864
No 236
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=27.89 E-value=4.3e+02 Score=27.45 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=66.7
Q ss_pred ceEEEEEecCCCCCCcc-hhHHHHHHHHHhhCCCCEEEEEccchhhhh--cCCeeecCHhHHhcccccCCcccccccCC-
Q 011084 86 AIRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLF--AQKTLEVTKEILSTYKNQGGYDMLGRTKD- 161 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n-~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~--~~~~ieLt~~~v~~~~n~GG~~~lgS~R~- 161 (494)
..+|.++ ||.-|... .-+..+++.+++..++.++.++- ...++ ....-.++++.+..++..|=..+.+++..
T Consensus 87 ~~~i~l~--gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t--~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~ 162 (343)
T TIGR03551 87 ATEVCIQ--GGIHPDLDGDFYLDILRAVKEEVPGMHIHAFS--PMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEI 162 (343)
T ss_pred CCEEEEE--eCCCCCCCHHHHHHHHHHHHHHCCCceEEecC--HHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhh
Confidence 3455555 77667543 34588888888776666666552 11110 00111134555555555442213333321
Q ss_pred -------CC---C-ChHHHHHHHHHHHHcCCC--EEEEecCcchHHHHHHHHHHHHhcC
Q 011084 162 -------QI---R-TTEQVNAALTACKNLNLD--GLVIIGGVTSNTDAAYLAETFAEAK 207 (494)
Q Consensus 162 -------k~---~-~~e~~~~~~~~l~~~~Id--~LviIGGd~S~~~A~~Lae~~~~~~ 207 (494)
++ + +.++.-++++.++++||. +-+++|=.+|...-......+++.+
T Consensus 163 ~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~ 221 (343)
T TIGR03551 163 LDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ 221 (343)
T ss_pred cCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh
Confidence 11 1 456778899999998865 4778884478777666666666544
No 237
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=27.69 E-value=5.3e+02 Score=24.37 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=49.7
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
||||+.--..|-...++.|+-+.+++. +..+ .+.... .+++.
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~--g~~v---------------------------------~~~~~~---~~~~~ 43 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKEL--GYEL---------------------------------TVLDAQ---NDAAK 43 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHc--CceE---------------------------------EecCCC---CCHHH
Confidence 677776667777778888888777532 1111 111111 13445
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
..++++.+...++||+++.+ .++......|.+ +.+. +++||.+
T Consensus 44 ~~~~~~~~~~~~~dgii~~~-~~~~~~~~~l~~-l~~~--~ipvv~~ 86 (268)
T cd06323 44 QLNDIEDLITRGVDAIIINP-TDSDAVVPAVKA-ANEA--GIPVFTI 86 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcC-CChHHHHHHHHH-HHHC--CCcEEEE
Confidence 56777888889999999864 443322233433 3333 4678776
No 238
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=27.07 E-value=6.3e+02 Score=25.09 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+...++++.+...++|++++.+-+.. .....+ +.+.+.+ ++||.+
T Consensus 40 ~~~q~~~i~~l~~~~vDgIIi~~~~~~-~~~~~l-~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 40 EAKQISQIENLIARGVDVLVIIPQNGQ-VLSNAV-QEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChh-HHHHHH-HHHHHCC--CeEEEe
Confidence 445567889999999999999875532 112223 3344444 788865
No 239
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.03 E-value=1.5e+02 Score=27.62 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=52.5
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
..+|.++ |+ .| .++..+.+.+++.+|+.++.|.++||-+..+. .+.++.+...+ .|++-.+-..++-
T Consensus 46 ~~~v~ll--G~-~~---~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~I~~~~-pdiv~vglG~PkQ 112 (171)
T cd06533 46 GLRVFLL--GA-KP---EVLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIERINASG-ADILFVGLGAPKQ 112 (171)
T ss_pred CCeEEEE--CC-CH---HHHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHHHHHcC-CCEEEEECCCCHH
Confidence 4677766 44 33 35555666777789999999999999773221 11344444443 4666555554432
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecC
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGG 189 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGG 189 (494)
+ .=+.+...+++-..++.+||
T Consensus 113 E---~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 113 E---LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred H---HHHHHHHHHCCCCEEEEece
Confidence 2 22333444556677777888
No 240
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=27.01 E-value=1.2e+02 Score=28.32 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=32.7
Q ss_pred HHcCCCEEEEecCcchHHH---HHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHH
Q 011084 177 KNLNLDGLVIIGGVTSNTD---AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (494)
Q Consensus 177 ~~~~Id~LviIGGd~S~~~---A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~ 243 (494)
...+.|++|+-||.++... ...+.+++.+++ ++|.|| |.|+...+..+.-
T Consensus 36 ~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI---------------C~G~Q~l~~~~Gg 88 (178)
T cd01744 36 LKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI---------------CLGHQLLALALGA 88 (178)
T ss_pred hhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE---------------CHHHHHHHHHcCC
Confidence 4458999999999876433 233344444443 577774 8888877766653
No 241
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.97 E-value=55 Score=31.05 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=37.4
Q ss_pred HHHHHcCCCEEEEecCcchHHHH----------------HHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch
Q 011084 174 TACKNLNLDGLVIIGGVTSNTDA----------------AYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (494)
Q Consensus 174 ~~l~~~~Id~LviIGGd~S~~~A----------------~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd 235 (494)
...+...+|+|++-||.|..++- ..|++.|.+.|.++-.|+|--++=--+.+..+..|+|-|
T Consensus 79 ~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~~TIGnD 156 (217)
T COG3155 79 AQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLRLTIGND 156 (217)
T ss_pred hhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCceeEEecCC
Confidence 34566789999999999986653 234555556666666676654443333333333444443
No 242
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.81 E-value=4.7e+02 Score=27.28 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=52.4
Q ss_pred hCCCCEEEEEccchhh--hh--------cCCeeecCHhH---HhcccccCC--cccccccCCCCCChHHHHHHHHHHHH-
Q 011084 115 HNPKSTLLGFLGGSEG--LF--------AQKTLEVTKEI---LSTYKNQGG--YDMLGRTKDQIRTTEQVNAALTACKN- 178 (494)
Q Consensus 115 ~~~~~~v~Gf~~G~~G--L~--------~~~~ieLt~~~---v~~~~n~GG--~~~lgS~R~k~~~~e~~~~~~~~l~~- 178 (494)
..-.....||.+|+.| +. ...|+++..+. +.-.....| |++.+.+- .-++++++..++.+++
T Consensus 49 lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp--~is~~~~~~~l~~~~~~ 126 (310)
T COG1105 49 LGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGP--EISEAELEQFLEQLKAL 126 (310)
T ss_pred cCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCC--CCCHHHHHHHHHHHHHh
Confidence 4567899999999999 33 23566665442 222222121 22222221 1267888888888888
Q ss_pred cCCCEEEEecC----cchHHHHHHHHHHHHhcCCCCeEE
Q 011084 179 LNLDGLVIIGG----VTSNTDAAYLAETFAEAKCPTKVV 213 (494)
Q Consensus 179 ~~Id~LviIGG----d~S~~~A~~Lae~~~~~~~~i~VI 213 (494)
+.=+.+|++.| .=....-..|.+-+++++ .+|+
T Consensus 127 l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g--~~vi 163 (310)
T COG1105 127 LESDDIVVLSGSLPPGVPPDAYAELIRILRQQG--AKVI 163 (310)
T ss_pred cccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcC--CeEE
Confidence 55444455555 223333344555565555 4555
No 243
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=26.75 E-value=1e+02 Score=31.64 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEeC
Q 011084 250 TDALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 288 (494)
Q Consensus 250 ~da~S~~k~~~~VevMGR-~ag~lAl~~aLat~p~~ilIp 288 (494)
.......+.+.||=+||- |.||++|--.-..+.|+++++
T Consensus 15 ~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~~~d~vVVS 54 (280)
T PF02569_consen 15 RAWRKAGKTIGFVPTMGALHEGHLSLIRRARAENDVVVVS 54 (280)
T ss_dssp HHHHHTTSSEEEEEE-SS--HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHHcCCeEEEECCCchhhHHHHHHHHHHHhCCCEEEEE
Confidence 444455678999999997 899999977777788888773
No 244
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=26.72 E-value=2.8e+02 Score=29.55 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=42.9
Q ss_pred ceEEEEEecCCCCCCcchhH-HHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVV-WGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI-~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
.+||.|..|||- -+.+ +.++ ...+.+|+|+.. .+-.+ ...+++ .
T Consensus 3 ~~kV~v~mSGGV----DSSVaA~lL-----k~QGyeViGl~m-----------~~~~~-----~~~~~C----------~ 47 (356)
T COG0482 3 KKKVLVGMSGGV----DSSVAAYLL-----KEQGYEVIGLFM-----------KNWDE-----DGGGGC----------C 47 (356)
T ss_pred CcEEEEEccCCH----HHHHHHHHH-----HHcCCeEEEEEE-----------Eeecc-----CCCCcC----------C
Confidence 579999999982 2223 3332 245899999872 11111 112222 2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEE
Q 011084 165 TTEQVNAALTACKNLNLDGLVI 186 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~Lvi 186 (494)
.++++..+.+.|++++|...++
T Consensus 48 s~~d~~da~~va~~LGIp~~~v 69 (356)
T COG0482 48 SEEDLRDAERVADQLGIPLYVV 69 (356)
T ss_pred chhHHHHHHHHHHHhCCceEEE
Confidence 4678999999999999998876
No 245
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=26.70 E-value=82 Score=29.86 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHH
Q 011084 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (494)
Q Consensus 174 ~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~ 242 (494)
+.+++++.|++|+-||-|+-..+....+.++....+++|.|| |+|+..-+..+-
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI---------------ClG~Q~la~a~G 90 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV---------------CLGHQAMAQAFG 90 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE---------------CHHHHHHHHHcC
Confidence 334567899999999999977654333333222234677774 899886665543
No 246
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=26.57 E-value=86 Score=33.08 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 202 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~ 202 (494)
-+-+.++++.||+.+||.|.-+||---++.+..+|--
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~ 107 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAA 107 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhh
Confidence 4678899999999999999999999888888888754
No 247
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=26.52 E-value=5.2e+02 Score=24.82 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=54.6
Q ss_pred CEEEEEccchhhhhcC---------CeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 011084 119 STLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189 (494)
Q Consensus 119 ~~v~Gf~~G~~GL~~~---------~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGG 189 (494)
..+++.=+|..=+++. ++=-++++..+.|... |..++--... ++..++++|++.+.+++.+-++++|+
T Consensus 19 ~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~~~~~e--KD~TD~e~Al~~~~~~~~~~i~i~Ga 95 (203)
T TIGR01378 19 DLVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKA-GVKIIVFPPE--KDTTDLELALKYALERGADEITILGA 95 (203)
T ss_pred CEEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHc-CCceEEcCCC--CCCCHHHHHHHHHHHCCCCEEEEEcC
Confidence 3688999998877764 3334556666666543 3334332222 24457999999999999999999998
Q ss_pred cch-----HHHHHHHHHH
Q 011084 190 VTS-----NTDAAYLAET 202 (494)
Q Consensus 190 d~S-----~~~A~~Lae~ 202 (494)
-|. +.+...|.++
T Consensus 96 ~GgR~DH~lani~~L~~~ 113 (203)
T TIGR01378 96 TGGRLDHTLANLNLLLEY 113 (203)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 665 5556666554
No 248
>PTZ00063 histone deacetylase; Provisional
Probab=26.52 E-value=1.6e+02 Score=32.27 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=52.1
Q ss_pred ccCCcccccccC---CCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCC
Q 011084 149 NQGGYDMLGRTK---DQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN 225 (494)
Q Consensus 149 n~GG~~~lgS~R---~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~ 225 (494)
-+-|+|.+..-+ ..+ |.+.+.++.+.++++++--+++.||-=+.++.+.-..+.-. -+++.|..|+++|+.
T Consensus 256 vqaG~D~~~~DpLg~l~L-t~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~-----~~~~~~~~~~~~iP~ 329 (436)
T PTZ00063 256 LQCGADSLTGDRLGRFNL-TIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETG-----VILNKHDEMSDQISL 329 (436)
T ss_pred EECCccccCCCCCCCccc-CHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHH-----HHhCCcccCCccCCC
Confidence 344666655433 223 67889999999999999988888887777776666555421 356788789999985
Q ss_pred CC
Q 011084 226 QF 227 (494)
Q Consensus 226 ~~ 227 (494)
.+
T Consensus 330 ~~ 331 (436)
T PTZ00063 330 ND 331 (436)
T ss_pred Cc
Confidence 43
No 249
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.51 E-value=2.9e+02 Score=28.40 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=46.6
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+++||+|+.||. ++| ...++++.+...-+.++.++.---.++ ..+...=|-...--.+.+
T Consensus 91 ~~~~kiavl~Sg~----g~n-l~al~~~~~~~~l~~~i~~visn~~~~-------------~~~A~~~gIp~~~~~~~~- 151 (289)
T PRK13010 91 GQRPKVVIMVSKF----DHC-LNDLLYRWRMGELDMDIVGIISNHPDL-------------QPLAVQHDIPFHHLPVTP- 151 (289)
T ss_pred CCCeEEEEEEeCC----Ccc-HHHHHHHHHCCCCCcEEEEEEECChhH-------------HHHHHHcCCCEEEeCCCc-
Confidence 4568999999997 233 345566554333345666555221111 111111121111111111
Q ss_pred CChHH-HHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 011084 164 RTTEQ-VNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (494)
Q Consensus 164 ~~~e~-~~~~~~~l~~~~Id~LviIGGd~S~~~A~~La 200 (494)
.+.+. -.++.+.|++++.|.+|+ -|..-.-....|.
T Consensus 152 ~~~~~~~~~~~~~l~~~~~Dlivl-agym~il~~~~l~ 188 (289)
T PRK13010 152 DTKAQQEAQILDLIETSGAELVVL-ARYMQVLSDDLSR 188 (289)
T ss_pred ccccchHHHHHHHHHHhCCCEEEE-ehhhhhCCHHHHh
Confidence 22222 246788899999995554 4444333333343
No 250
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=26.27 E-value=8.8e+02 Score=26.45 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=89.2
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
++||.-. ||-=-+||.+.++.++.. +.-| .++-|.+.|+.+ ||. ++ .|+.
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY----TG----mtP~ 61 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARAS--GTPV--------------LIEATSNQVNQF---GGY----TG----MTPA 61 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc----CC----CCHH
Confidence 4577664 455558999988876532 3333 478899999988 775 22 2455
Q ss_pred HHH-HHHHHHHHcCCCE-EEEecCcc-------------hHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc
Q 011084 168 QVN-AALTACKNLNLDG-LVIIGGVT-------------SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 232 (494)
Q Consensus 168 ~~~-~~~~~l~~~~Id~-LviIGGd~-------------S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~ 232 (494)
+|. -+.+..++.+++. .+++|||- +|..|..|-+.+-+.|+ .-|++=.|++ .. +...-+
T Consensus 62 dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--ca--~d~~~L 135 (420)
T TIGR02810 62 DFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGF--TKIHLDASMG--CA--GDPAPL 135 (420)
T ss_pred HHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--cc--CCCccC
Confidence 555 4556678899998 99999984 57777777777777786 6788877777 11 112567
Q ss_pred CchhHHHHHHHHHHHHHHHHh
Q 011084 233 GFDTICKVNSQLISNVCTDAL 253 (494)
Q Consensus 233 GFdTA~~~~~~~I~nl~~da~ 253 (494)
.-+|.++-.++++.-.-..+.
T Consensus 136 ~d~~vAeRaa~L~~~aE~~~~ 156 (420)
T TIGR02810 136 DDATVAERAARLCAVAEAAAT 156 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 778889988888875544433
No 251
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=26.05 E-value=3.6e+02 Score=25.54 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=53.3
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
||+|......|-...++.|+.++++.. +++++ +..+.. +++.
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~--g~~~~---------------------------------~~~~~~---~~~~ 43 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREA--GYGVL---------------------------------LGDTRS---DPER 43 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHc--CCeEE---------------------------------EecCCC---ChHH
Confidence 788888777888888888888887642 33332 001111 2344
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
...+++.+...++|++++.+.+.... +.+.. .. +++||.+-.
T Consensus 44 ~~~~~~~~~~~~vdgiii~~~~~~~~----~~~~~-~~--~ipvv~~~~ 85 (267)
T cd06284 44 EQEYLDLLRRKQADGIILLDGSLPPT----ALTAL-AK--LPPIVQACE 85 (267)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHH----HHHHH-hc--CCCEEEEec
Confidence 55678889999999999988765433 11222 22 478887743
No 252
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=25.97 E-value=1.7e+02 Score=30.43 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHH----cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKN----LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~----~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++++.++.+.+++ -+.|++||.-|-|||...+.+-.+..+ +.+.+||-.
T Consensus 58 t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~-~l~kPVVlT 111 (323)
T smart00870 58 TPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLD-SLDKPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhh-cCCCCEEEE
Confidence 56777777777765 479999999999999886654444333 334567654
No 253
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.81 E-value=2.2e+02 Score=28.56 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=27.2
Q ss_pred ceEEEEEecCCCCCCcch---hHHHHHHHHHhhCCCCEEEEE
Q 011084 86 AIRVGIVFCGRQSPGGHN---VVWGLYDALKLHNPKSTLLGF 124 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~---vI~gl~~~~~~~~~~~~v~Gf 124 (494)
++||+|++ ||+.|=-.+ ....+.+++++. +.++.-+
T Consensus 4 ~~~v~~~~-g~~~~~~~~~~~s~~~i~~al~~~--g~~v~~i 42 (304)
T PRK01372 4 FGKVAVLM-GGTSAEREVSLNSGAAVLAALREA--GYDAHPI 42 (304)
T ss_pred CcEEEEEe-CCCCCCceEeHHhHHHHHHHHHHC--CCEEEEE
Confidence 46899777 889998888 778888888754 5666554
No 254
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.73 E-value=1.2e+02 Score=26.61 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=29.1
Q ss_pred HhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCC-CEEEEecCcchHH
Q 011084 144 LSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVTSNT 194 (494)
Q Consensus 144 v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~I-d~LviIGGd~S~~ 194 (494)
++.....+- ++++-|-..-...+..++.++.|++.+. +-.+++||.....
T Consensus 43 ~~~a~~~~~-d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~ 93 (122)
T cd02071 43 VEAAIQEDV-DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPE 93 (122)
T ss_pred HHHHHHcCC-CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHH
Confidence 333333433 4555444333445677777777887766 5667788776533
No 255
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=25.70 E-value=1.8e+02 Score=29.82 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=48.6
Q ss_pred eeecCHhHHhcccc-cCCc-cc-ccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch--------HHHHHHHHHHHH
Q 011084 136 TLEVTKEILSTYKN-QGGY-DM-LGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS--------NTDAAYLAETFA 204 (494)
Q Consensus 136 ~ieLt~~~v~~~~n-~GG~-~~-lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S--------~~~A~~Lae~~~ 204 (494)
..+.|...+..++. ++|. .+ -=+||+. +...++..++.+.++||..++.++||-. ...|..|-+..+
T Consensus 60 ~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~--n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik 137 (291)
T COG0685 60 TPRRTSVAAAALLKRTGGIEPIPHLTCRDR--NRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIK 137 (291)
T ss_pred CCcccHHHHHHHHHhcCCCccceeecccCC--CHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHH
Confidence 34445544444433 3343 11 1256665 6788999999999999999999999984 345667777777
Q ss_pred hcCCCC
Q 011084 205 EAKCPT 210 (494)
Q Consensus 205 ~~~~~i 210 (494)
+.+-++
T Consensus 138 ~~~~~~ 143 (291)
T COG0685 138 KMRGGI 143 (291)
T ss_pred HhcCCe
Confidence 554333
No 256
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=25.55 E-value=2.1e+02 Score=27.89 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcc--hHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVT--SNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~--S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
++++++++.+.+.+-|++ .|||-. +..+...+.+..++ ..+++||--|.+.+.=
T Consensus 11 e~~~~ia~~v~~~gtDaI-~VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~i 66 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAI-MVGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNGL 66 (205)
T ss_pred HHHHHHHHHHHhcCCCEE-EEcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCcccc
Confidence 667788889999999988 556554 34455555555554 3578999988776643
No 257
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=25.43 E-value=1.7e+02 Score=29.34 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=57.2
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+...||+++..-..|-...++.|+-+.+.+. +..++ +.+.. .
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~--gy~~~---------------------------------i~~~~---~ 100 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCREA--GYQLL---------------------------------IACSD---D 100 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---C
Confidence 3468999987655666666777777766431 22221 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+++...+.++.+...++||+|+.+.+..... .+ +.+.+.+ ++||.+ |.+.....+ .+++.|-
T Consensus 101 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~dn 162 (327)
T TIGR02417 101 NPDQEKVVIENLLARQVDALIVASCMPPEDA--YY-QKLQNEG--LPVVAL----DRSLDDEHF-CSVISDD 162 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCChH--HH-HHHHhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 2334456778888999999999886542211 12 2233334 677754 444432222 3555554
No 258
>PHA02728 uncharacterized protein; Provisional
Probab=24.95 E-value=39 Score=30.51 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=12.3
Q ss_pred EeeecccCCCCCCC
Q 011084 214 GVPVTLNGDLKNQF 227 (494)
Q Consensus 214 gVPkTIDNDl~~~~ 227 (494)
.||-|+|||++++.
T Consensus 43 lvpytvdndlpnpn 56 (184)
T PHA02728 43 LVPYTVDNDLPNPN 56 (184)
T ss_pred ccceeccCCCCCCC
Confidence 48999999999875
No 259
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=24.90 E-value=1.6e+02 Score=31.12 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~----~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++++..+.+.+++. +.|++||.-|-|||...+.+-.+..+. +.+||-.
T Consensus 86 t~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~Lsl~l~~--~kPVVlT 138 (349)
T TIGR00520 86 NEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLDLTVKS--DKPVVIV 138 (349)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHHHHHHcCC--CCCEEEE
Confidence 466776666655543 699999999999998866544444433 4566654
No 260
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=24.80 E-value=5e+02 Score=25.61 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=69.6
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+| .|.+.|.++.-+.|..+.++..+|+.+++...- | + ..
T Consensus 119 ~t~kVG~I-~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~~------------------------g------~----~~ 163 (258)
T cd06353 119 KTNKVGYV-AAFPIPEVVRGINAFALGARSVNPDATVKVIWT------------------------G------S----WF 163 (258)
T ss_pred cCCcEEEE-cCcccHHHHHHHHHHHHHHHHHCCCcEEEEEEe------------------------c------C----CC
Confidence 34578888 466778888888888888877777766653211 1 1 11
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~ 244 (494)
++..-+++.+.+-..+.|.++-.+ ++ .++. +.++++| +.+||+-.--+.+-+..- --|+++-+...
T Consensus 164 D~~~a~~~a~~l~~~G~DvI~~~~--~~-~g~~---~aa~~~g--~~~IG~d~dq~~~~~~~v------ltS~v~~~~~~ 229 (258)
T cd06353 164 DPAKEKEAALALIDQGADVIYQHT--DS-PGVI---QAAEEKG--VYAIGYVSDMSKFAPKAV------LTSAVWNWGPY 229 (258)
T ss_pred CcHHHHHHHHHHHHCCCcEEEecC--CC-hHHH---HHHHHhC--CEEEeeccchhhhCCCCE------EEEEeeehHHH
Confidence 234445666777778999888886 21 2332 2233345 689998643333333221 23455555555
Q ss_pred HHHHHHHHh
Q 011084 245 ISNVCTDAL 253 (494)
Q Consensus 245 I~nl~~da~ 253 (494)
+.++..++.
T Consensus 230 ~~~~~~~~~ 238 (258)
T cd06353 230 YVAAVKAVL 238 (258)
T ss_pred HHHHHHHHH
Confidence 555554444
No 261
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=24.55 E-value=84 Score=30.09 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=43.8
Q ss_pred CHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 140 TKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 140 t~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
|...++.++..| . -+-..|..-.+. +.++.++.|++|+-||-++-.......+..++...+++|.||
T Consensus 12 t~nl~~~l~~~g-~-~v~v~~~~~~~~-------~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI---- 78 (195)
T PRK07649 12 TFNLVQFLGELG-Q-ELVVKRNDEVTI-------SDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV---- 78 (195)
T ss_pred HHHHHHHHHHCC-C-cEEEEeCCCCCH-------HHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE----
Confidence 344455555553 3 334444331122 234557899999999999976543333322221224667764
Q ss_pred cCCCCCCCCCCCcCchhHHHHH
Q 011084 220 NGDLKNQFVETNVGFDTICKVN 241 (494)
Q Consensus 220 DNDl~~~~ie~S~GFdTA~~~~ 241 (494)
|+|+.-.+..+
T Consensus 79 -----------ClG~Qlla~~l 89 (195)
T PRK07649 79 -----------CLGHQSIAQVF 89 (195)
T ss_pred -----------cHHHHHHHHHc
Confidence 89988766643
No 262
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=23.99 E-value=1.2e+02 Score=28.72 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~ 242 (494)
+.|+||+.||-++-.....+.+.+++...+++|.|| |+|+.--+..+.
T Consensus 43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI---------------ClG~Qlla~~~G 90 (190)
T PRK06895 43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV---------------CLGHQTLCEFFG 90 (190)
T ss_pred cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE---------------cHHHHHHHHHhC
Confidence 478999999999644433444444332224677764 999986665543
No 263
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=23.95 E-value=3.6e+02 Score=29.08 Aligned_cols=96 Identities=20% Similarity=0.160 Sum_probs=54.1
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC-CCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQI 163 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R-~k~ 163 (494)
+.+||.||=+||- =|+.++.+.+ .....++|...+. .|... ++..- ..+
T Consensus 3 ~~~kvLviG~g~r---ehal~~~~~~----~~~~~~~~~~pgn-~g~~~----------------------~~~~~~~~~ 52 (426)
T PRK13789 3 VKLKVLLIGSGGR---ESAIAFALRK----SNLLSELKVFPGN-GGFPD----------------------DELLPADSF 52 (426)
T ss_pred CCcEEEEECCCHH---HHHHHHHHHh----CCCCCEEEEECCc-hHHhc----------------------cccccccCc
Confidence 3489999988884 4777776643 3345688876632 23221 11000 011
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+..+.+.+++.++++++|.+|+ |..+-. +.-+++.+++.| ++++|-.
T Consensus 53 -~~~d~~~l~~~a~~~~iD~Vv~-g~E~~l--~~glad~~~~~G--ip~~Gp~ 99 (426)
T PRK13789 53 -SILDKSSVQSFLKSNPFDLIVV-GPEDPL--VAGFADWAAELG--IPCFGPD 99 (426)
T ss_pred -CcCCHHHHHHHHHHcCCCEEEE-CCchHH--HHHHHHHHHHcC--CCcCCCH
Confidence 2345677888899999997775 554432 233445555555 4565543
No 264
>COG4683 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.78 E-value=53 Score=28.95 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=38.4
Q ss_pred CCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceEEEEEecCCCCCC
Q 011084 21 YQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPG 100 (494)
Q Consensus 21 ~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIl~sGG~aPG 100 (494)
|-|+||..+.+. ..+. ....++++=|.-.|.|+--+.. ..|.|.+|++.||+-.|
T Consensus 36 ~Gp~L~~Py~dk----Vn~S--------r~knMkELR~q~~G~piRilfA-------------FDP~R~AIlL~~GnKag 90 (120)
T COG4683 36 EGPTLGRPYVDK----VNGS--------RHKNMKELRPQGQGTPIRILFA-------------FDPARQAILLLGGNKAG 90 (120)
T ss_pred hCCCCCCccccc----cccc--------chhhHHHhCccCCCCeEEEEEe-------------cChHhHHHhhhccCccC
Confidence 668888887543 3332 2356788888877877554432 34679999999998776
Q ss_pred c
Q 011084 101 G 101 (494)
Q Consensus 101 ~ 101 (494)
.
T Consensus 91 ~ 91 (120)
T COG4683 91 N 91 (120)
T ss_pred c
Confidence 4
No 265
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=23.67 E-value=7e+02 Score=26.87 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC
Q 011084 166 TEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ 226 (494)
Q Consensus 166 ~e~~~~~~~~l~~~---~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~ 226 (494)
.+-+.++......+ ++..+-|-|-+|-=|++..|+.-+.+.|. .++...|+.|.+.+.
T Consensus 77 ~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~---~~~~~gn~~~~i~~~ 137 (460)
T PRK00139 77 RKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGE---KTALIGTLGNGIGGE 137 (460)
T ss_pred HHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCC---CEEEECCcccccCCe
Confidence 34455555554433 66777888888888889999988887774 567777777776553
No 266
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.66 E-value=59 Score=28.39 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=61.1
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
+||.|+-+|-. ..-+++++++. +.+.+.+..=++ -.-......+.....|+. - +.+.-+
T Consensus 3 kkvLIanrGei-------a~r~~ra~r~~--Gi~tv~v~s~~d------~~s~~~~~ad~~~~~~~~-~--~~~~yl--- 61 (110)
T PF00289_consen 3 KKVLIANRGEI-------AVRIIRALREL--GIETVAVNSNPD------TVSTHVDMADEAYFEPPG-P--SPESYL--- 61 (110)
T ss_dssp SEEEESS-HHH-------HHHHHHHHHHT--TSEEEEEEEGGG------TTGHHHHHSSEEEEEESS-S--GGGTTT---
T ss_pred CEEEEECCCHH-------HHHHHHHHHHh--CCcceeccCchh------cccccccccccceecCcc-h--hhhhhc---
Confidence 46777766654 33455666654 667776664222 111122333444444432 0 112222
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+.+++++.+++.++++ +.||-|-+.-...|++.+.+.| +.+||-
T Consensus 62 -~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~g--i~fiGp 105 (110)
T PF00289_consen 62 -NIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAG--IIFIGP 105 (110)
T ss_dssp -SHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred -cHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCC--CEEECc
Confidence 3678888899987665 6699999999999999988776 566653
No 267
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.49 E-value=1.9e+02 Score=27.70 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
++...+.+.+...++|++++.+.+.. . .+ +.+.+.+ ++||.+ |.+.+...+ .++++|-
T Consensus 45 ~~~~~~~~~l~~~~vdgiii~~~~~~-~---~~-~~l~~~~--ipvV~~----~~~~~~~~~-~~V~~d~ 102 (268)
T cd06277 45 EEEFELPSFLEDGKVDGIILLGGIST-E---YI-KEIKELG--IPFVLV----DHYIPNEKA-DCVLTDN 102 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCh-H---HH-HHHhhcC--CCEEEE----ccCCCCCCC-CEEEecc
Confidence 34456677788899999999986543 1 12 3344444 688854 555432221 3455543
No 268
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=23.44 E-value=3.9e+02 Score=25.51 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCEEEEec
Q 011084 170 NAALTACKNLNLDGLVIIG 188 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIG 188 (494)
+.+.+.+++++.|.+|++|
T Consensus 69 ~~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 69 QAIIEELRAHEVDLVVLAG 87 (190)
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 3567888999999877776
No 269
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=23.43 E-value=41 Score=35.22 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=42.8
Q ss_pred eecCHhHHhcccccCCcccccc--cCCCCCChHHHHHHHHHHHHcC-----------------CCEEEEecCcchHHHHH
Q 011084 137 LEVTKEILSTYKNQGGYDMLGR--TKDQIRTTEQVNAALTACKNLN-----------------LDGLVIIGGVTSNTDAA 197 (494)
Q Consensus 137 ieLt~~~v~~~~n~GG~~~lgS--~R~k~~~~e~~~~~~~~l~~~~-----------------Id~LviIGGd~S~~~A~ 197 (494)
-.|+++.+..+...-|+|. |. +..|. .....+.+.+.|.+-+ .|.+|-+|||||+--|+
T Consensus 45 ~~lspdql~q~L~srgtdv-~~ll~~hKv-hkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aa 122 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDV-GRLLSKHKV-HKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAA 122 (395)
T ss_pred cCCCHHHHHHHHHhcCchH-HHHHHHhHH-HHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehh
Confidence 4567777777666666642 11 00122 1233445555555544 47899999999987765
Q ss_pred H-HHHHHHhcCCCCeEEEee
Q 011084 198 Y-LAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 198 ~-Lae~~~~~~~~i~VIgVP 216 (494)
- +.+ -.++||||-
T Consensus 123 srv~~------~~~PViGvN 136 (395)
T KOG4180|consen 123 SRVID------DSKPVIGVN 136 (395)
T ss_pred hhhhc------cCCceeeec
Confidence 4 543 247999983
No 270
>PLN02735 carbamoyl-phosphate synthase
Probab=23.35 E-value=3e+02 Score=33.70 Aligned_cols=109 Identities=17% Similarity=0.078 Sum_probs=58.9
Q ss_pred CCCceEEEEEecCCCCCC----cchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccc
Q 011084 83 EHPAIRVGIVFCGRQSPG----GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR 158 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG----~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS 158 (494)
....+||.|+-||...-| .-..-..+.+++++ .|.+|+.+-.-+.- +-.+....+.+ .+
T Consensus 20 ~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke--~G~~Vi~vd~np~t------~~~~~~~aD~~-------yi-- 82 (1102)
T PLN02735 20 RTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKE--EGYEVVLINSNPAT------IMTDPETADRT-------YI-- 82 (1102)
T ss_pred ccCCCEEEEECCCccccccceeecchHHHHHHHHHH--cCCEEEEEeCCccc------ccCChhhCcEE-------Ee--
Confidence 345689999999975443 11122234444443 37788877533211 11111111111 01
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHH--HHHhcCCCCeEEEee
Q 011084 159 TKDQIRTTEQVNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAE--TFAEAKCPTKVVGVP 216 (494)
Q Consensus 159 ~R~k~~~~e~~~~~~~~l~~~~Id~Lvi-IGGd~S~~~A~~Lae--~~~~~~~~i~VIgVP 216 (494)
.+.+. +.+.+.+++.++|+++. +||+-....|..|++ .+++.| ++++|.+
T Consensus 83 ---~p~~~---e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~G--I~~~G~~ 135 (1102)
T PLN02735 83 ---APMTP---ELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYG--VELIGAK 135 (1102)
T ss_pred ---CCCCH---HHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCC--CEEECCC
Confidence 11123 34666788999999995 588877777777763 333334 6777654
No 271
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=23.33 E-value=1.7e+02 Score=33.09 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=66.0
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
.+..|||+.|..+.-=.|.-..-+.+..++--...--+.|-.+.-++-++--+ .++| |. +-+.
T Consensus 41 ~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiam-----------G~~G--M~----~SL~ 103 (575)
T COG0129 41 GKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAM-----------GHDG--MP----YSLP 103 (575)
T ss_pred CCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCCCCccCcccc-----------CCCC--cc----cccc
Confidence 45689999999988777777655554443211111122333333332222111 1122 21 2233
Q ss_pred ChHHHH-HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 165 TTEQVN-AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 165 ~~e~~~-~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+.|-+. .+...+..|-+|++|+|||-|-.+=+..++-. ..+++.|.||.
T Consensus 104 SRelIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~----r~niPaIfv~g 153 (575)
T COG0129 104 SRELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAA----RLNIPAIFVSG 153 (575)
T ss_pred cHHHHHHHHHHHHhccCcceEEEecCCCCccHHHHHHHH----hcCCCEEEecC
Confidence 444443 44556788889999999999999998888732 24689999983
No 272
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=23.25 E-value=2.2e+02 Score=30.92 Aligned_cols=49 Identities=27% Similarity=0.222 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~---~Id~LviIGGd~S~~~A~-~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++++.+++. +.|++||.=|-|||.-.+ .|+ ++. +.+.+||-.=
T Consensus 134 tp~~W~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs-~~l--~~~kPVVlTG 186 (419)
T PRK04183 134 TPEYWVEIAEAVYEEIKNGADGVVVAHGTDTMHYTAAALS-FML--KTPVPIVFVG 186 (419)
T ss_pred CHHHHHHHHHHHHHHhhccCCeEEEecCCchHHHHHHHHH-Hhc--CCCCCEEEeC
Confidence 567777777766655 799999999999998755 454 333 4456777653
No 273
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=23.14 E-value=1.3e+02 Score=32.27 Aligned_cols=69 Identities=22% Similarity=0.116 Sum_probs=52.8
Q ss_pred CcccccccCCC-C-CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCC
Q 011084 152 GYDMLGRTKDQ-I-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF 227 (494)
Q Consensus 152 G~~~lgS~R~k-~-~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ 227 (494)
|.|-|+--|.. + .+...-.++++.++++++--|++=||-=+.++.++..-|- +. |.+=..++|+++.++
T Consensus 261 GaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYe------T~-v~~~~~~~~elP~n~ 331 (425)
T KOG1342|consen 261 GADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYE------TG-VLLDQELPNELPYND 331 (425)
T ss_pred CCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHH------hh-hhcCccccccCCCcc
Confidence 44666665631 2 1567889999999999999998888888999999888763 33 347788999999765
No 274
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.00 E-value=2.7e+02 Score=25.09 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCC-CEEEEecCcch
Q 011084 143 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVTS 192 (494)
Q Consensus 143 ~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~I-d~LviIGGd~S 192 (494)
.++.....+. ++++=|-..-.+.+.++++++.|++.+. +-.|++||.=.
T Consensus 45 ~v~aa~e~~a-dii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 45 IARQAVEADV-HVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHHcCC-CEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 4455555544 4555444333345667777777777666 45677776554
No 275
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.87 E-value=3.8e+02 Score=27.25 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=45.4
Q ss_pred HHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 011084 143 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 214 (494)
Q Consensus 143 ~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIg 214 (494)
..+.+...|+. +..+.+..+. ..++...+..+++.+-|.+++.+... .+..+.+.+++.|.+.++++
T Consensus 158 ~~~~~~~~G~~-v~~~~~~~~~-~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 158 LTAALAARGLK-PVAVEWFNWG-DKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHHHHcCCe-eEEEeeecCC-CccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 34445556765 7766666553 45788888889999999988877433 33445566777887766665
No 276
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.54 E-value=4.4e+02 Score=25.06 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=50.5
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 168 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~ 168 (494)
|||++..-+.|=.+.++.|+-++++.. +.+++ +.-+. .+.+.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~--------------------------------~~~~~----~~~~~ 43 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQ--GYNLI--------------------------------LCNTE----GDPER 43 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHc--CCEEE--------------------------------EEeCC----CChHH
Confidence 788887666666667777777766432 22321 00011 12345
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
..+.++.+...++|++++.+.+........+.+ .. +++||.+-.
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~--~ipvV~i~~ 87 (269)
T cd06275 44 QRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER---YR--HIPMVVMDW 87 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh---cC--CCCEEEEec
Confidence 567788899999999999997755322222211 12 478885543
No 277
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.50 E-value=1.8e+02 Score=29.85 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=62.7
Q ss_pred EEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC-CCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHH-HH
Q 011084 120 TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTD-AA 197 (494)
Q Consensus 120 ~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R-~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~-A~ 197 (494)
++.-+.|-..| +++....-.+..+.+...|.. . +.| +.- ..+..++++.+...+.|.+|+.|||||... +.
T Consensus 4 ~~~~i~Np~sG--~~~~~~~~~~~~~~l~~~g~~-~--~~~~t~~--~g~a~~~a~~a~~~~~D~via~GGDGTv~evin 76 (301)
T COG1597 4 KALLIYNPTSG--KGKAKKLLREVEELLEEAGHE-L--SVRVTEE--AGDAIEIAREAAVEGYDTVIAAGGDGTVNEVAN 76 (301)
T ss_pred eEEEEEccccc--ccchhhHHHHHHHHHHhcCCe-E--EEEEeec--CccHHHHHHHHHhcCCCEEEEecCcchHHHHHH
Confidence 45556666666 333222223344445555554 2 222 111 134566677777779999999999999875 45
Q ss_pred HHHHHHHhcCCCCe-EEEeeecccCCCCCCCCCCCcCchhH-HHHHHHHHH
Q 011084 198 YLAETFAEAKCPTK-VVGVPVTLNGDLKNQFVETNVGFDTI-CKVNSQLIS 246 (494)
Q Consensus 198 ~Lae~~~~~~~~i~-VIgVPkTIDNDl~~~~ie~S~GFdTA-~~~~~~~I~ 246 (494)
-|++ .+ .+ +--||.===||+. .++|...- .....+.+.
T Consensus 77 gl~~----~~--~~~LgilP~GT~NdfA-----r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 77 GLAG----TD--DPPLGILPGGTANDFA-----RALGIPLDDIEAALELIK 116 (301)
T ss_pred HHhc----CC--CCceEEecCCchHHHH-----HHcCCCchhHHHHHHHHH
Confidence 5654 33 34 6678877777775 56776662 444444433
No 278
>PRK00035 hemH ferrochelatase; Reviewed
Probab=22.49 E-value=5.7e+02 Score=26.34 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=65.0
Q ss_pred EEEEE--ecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccc-hhhhhcCCeeecC-HhHHhcccccCCcccccccCCCC
Q 011084 88 RVGIV--FCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGG-SEGLFAQKTLEVT-KEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 88 ~IgIl--~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G-~~GL~~~~~ieLt-~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
++||| .-|||. -...+-.++.....+..++.+... +.-++..-+.... ......|+.-|| || +-..
T Consensus 5 k~~vll~n~G~P~-----~~~~v~~fl~~~~~d~~v~~~~~~~~~~~l~~~i~~~r~~~~~~~Y~~ig~----gS-Pl~~ 74 (333)
T PRK00035 5 KDAVLLLNLGGPE-----TPEDVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAKHYASIGG----GS-PLNV 74 (333)
T ss_pred ceEEEEEeCCCCC-----CHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhhhhhHHHHHHHHHHcCC----CC-hhHH
Confidence 45554 458877 446666666666667777764322 2333333333322 345667887776 23 2222
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecC---cchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGG---VTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGG---d~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.|.++.+++.+.+.+.+.+.-|.+|= .=+.. ..| +.+.+.|+ ..|+.+|
T Consensus 75 ~t~~q~~~L~~~l~~~~~~~~V~~am~y~~P~i~--eal-~~l~~~G~-~~IivlP 126 (333)
T PRK00035 75 ITRRQAEALQAELAARGPDLPVYLGMRYWNPSIE--EAL-EALKADGV-DRIVVLP 126 (333)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEeecCCCCCHH--HHH-HHHHhcCC-CEEEEEE
Confidence 35677778888787666666666652 22222 233 34555676 5899999
No 279
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=22.40 E-value=1.5e+02 Score=30.54 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=27.4
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
.+|++|+--|.|+ ++.=++.++++.+.+++||||..
T Consensus 183 ~~d~vv~~vGtGg--t~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 183 DFDAVVVASGSGG--THAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred CCCEEEEeCCcHH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 4899888777776 44556677777777899999985
No 280
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.27 E-value=4.1e+02 Score=26.49 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=44.5
Q ss_pred HhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 011084 144 LSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 214 (494)
Q Consensus 144 v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIg 214 (494)
.+.+...|+. +.+..+..+. ..++...+..+++.+-|.+++.+... .+..+.+.+++.|++.++++
T Consensus 158 ~~~~~~~G~~-vv~~~~~~~~-~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 158 TKAFEALGGT-VTNVVAHEEG-KSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHHHcCCE-EEEEEeeCCC-CCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 4445567776 7776666553 56788889999999999998775433 33444455666787666665
No 281
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=22.16 E-value=3.8e+02 Score=25.73 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+++.+.+.+.++||+++.+.+... ..+ +.+.+.| ++||.+-...
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~~---~~~-~~~~~~~--ipvV~~~~~~ 97 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQD---PLP-ERLAETG--LPFVVWGRPL 97 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCh---HHH-HHHHhCC--CCEEEECCcc
Confidence 455567778899999999876542 223 3344444 6888765433
No 282
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=22.04 E-value=5.5e+02 Score=22.63 Aligned_cols=69 Identities=23% Similarity=0.171 Sum_probs=45.6
Q ss_pred ecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecC
Q 011084 187 IGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 266 (494)
Q Consensus 187 IGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMG 266 (494)
-||.|.-+-+..|+.++.++|..+.+ +|-|..++.++ ..|.++-+-+
T Consensus 8 kgg~gkt~~~~~~a~~~~~~~~~~~~------vd~D~~~~~~~---------------------------yd~VIiD~p~ 54 (139)
T cd02038 8 KGGVGKTNISANLALALAKLGKRVLL------LDADLGLANLD---------------------------YDYIIIDTGA 54 (139)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEE------EECCCCCCCCC---------------------------CCEEEEECCC
Confidence 38888888899999999887754333 67787665532 2345666654
Q ss_pred CCccHHHHHhhhhcCCcEEEeCCcc
Q 011084 267 RRASHVALECTLQSHPNMVILGEEV 291 (494)
Q Consensus 267 R~ag~lAl~~aLat~p~~ilIpEe~ 291 (494)
..+..+..+ ..++|.+++|=++
T Consensus 55 -~~~~~~~~~--l~~aD~vviv~~~ 76 (139)
T cd02038 55 -GISDNVLDF--FLAADEVIVVTTP 76 (139)
T ss_pred -CCCHHHHHH--HHhCCeEEEEcCC
Confidence 566666543 3467888886554
No 283
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=21.97 E-value=2.9e+02 Score=26.43 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+...+.++.+.+.++|++++.+.+.+... ..+ +.+.+. +++||.+=
T Consensus 42 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~-~~l~~~--~iPvv~~~ 88 (272)
T cd06301 42 VATQLSQVENFIAQGVDAIIVVPVDTAATA-PIV-KAANAA--GIPLVYVN 88 (272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCchhhhH-HHH-HHHHHC--CCeEEEec
Confidence 455667788888999999999887643222 222 334334 47888653
No 284
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=21.80 E-value=1.6e+02 Score=22.51 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHcCCCE------------EEEecCcchHHHHHHHHHHHH-hcCCC
Q 011084 165 TTEQVNAALTACKNLNLDG------------LVIIGGVTSNTDAAYLAETFA-EAKCP 209 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~------------LviIGGd~S~~~A~~Lae~~~-~~~~~ 209 (494)
+++..++.++.|++.+++. -|.+|...+...|..+.+.++ ..+.+
T Consensus 14 ~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 14 SEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp -HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred CHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 5677888888888888874 688898888888887777776 45543
No 285
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=21.79 E-value=2.1e+02 Score=25.05 Aligned_cols=67 Identities=7% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHH
Q 011084 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (494)
Q Consensus 171 ~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I 245 (494)
.+++.++. .+|+.|||-+-..+..++..+....++.-++-.|+. +++ +-+..-.|+-++-+....+.
T Consensus 44 ~v~~~ln~----~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~--~~~--~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 44 EVIEYINT----RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD--NRM--TIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred HHHHHHHc----CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC--Cce--EEEEEEeCCCCHHHHHHHHH
Confidence 44555543 489999999989999999998888887777777774 543 23346889988887766553
No 286
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=21.70 E-value=1.5e+02 Score=25.13 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
..+...+-..++.++|+.||..--.....+++.. +++|+..|
T Consensus 51 ~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~-----~i~vi~t~ 92 (105)
T PF07085_consen 51 EDIQLAAIEAGIACIILTGGLEPSEEVLELAKEL-----GIPVISTP 92 (105)
T ss_dssp HHHHHHHCCTTECEEEEETT----HHHHHHHHHH-----T-EEEE-S
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHC-----CCEEEEEC
Confidence 4566777788899999999998888888787753 38999988
No 287
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=21.66 E-value=3.3e+02 Score=27.35 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=53.4
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+...|||++..-+.|=...++.|+-+.+.+. +.+++- ..+. .
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~---------------------------------~~~~---~ 99 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQK--GYTLIL---------------------------------CNAW---N 99 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC---C
Confidence 3468999998777777778888888877533 233221 1111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+.+...+.++.+...++||+++.+++.+......|.++ . +++||.+
T Consensus 100 ~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~---~--~iPvV~~ 145 (341)
T PRK10703 100 NLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEY---R--HIPMVVM 145 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc---C--CCCEEEE
Confidence 23444566677888999999999876543322333221 3 4677754
No 288
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=21.65 E-value=1.3e+02 Score=27.61 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=25.1
Q ss_pred EEEecCcchH--HHHHHHHHHHHhcCCCCeEEEeee
Q 011084 184 LVIIGGVTSN--TDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 184 LviIGGd~S~--~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+++.|.|||= |.+..|++.+.+.|..+.++.-|.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~ 38 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG 38 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6788888884 447899999988787655555554
No 289
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=21.42 E-value=3.3e+02 Score=27.41 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=38.4
Q ss_pred cCceEEEEecCCCccHHHHHhhhhc-C---CcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 011084 256 EKYYYFIRLMGRRASHVALECTLQS-H---PNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL 324 (494)
Q Consensus 256 ~k~~~~VevMGR~ag~lAl~~aLat-~---p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv 324 (494)
++.+.++|+ ..||+...+++-. + -.++|+|+.|. .-.+.|.+.|++|. |++-+||+.
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd-------~sA~~ir~~l~~~~--g~~v~VIIt 148 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD-------ASAEKIRRGLRELT--GVDVGVIIT 148 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH-------HHHHHHHHHHHHHH--CCCEEEEEE
Confidence 344667887 5788877777763 2 24789999973 22566677777665 677777665
No 290
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.33 E-value=6.8e+02 Score=23.94 Aligned_cols=48 Identities=31% Similarity=0.156 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
.++....++.+...++|++++.+.+.+- ....+. .+.+.| ++||.+-.
T Consensus 46 ~~~~~~~~~~l~~~~vDgiii~~~~~~~-~~~~i~-~~~~~g--IpvV~~d~ 93 (274)
T cd06311 46 TEQQNAQQDLLINRKIDALVILPFESAP-LTQPVA-KAKKAG--IFVVVVDR 93 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCchh-hHHHHH-HHHHCC--CeEEEEcC
Confidence 4566788898999999999998765332 112232 233344 78887643
No 291
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=21.19 E-value=3.3e+02 Score=24.22 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=39.5
Q ss_pred cccccCCCCCChHHHHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 155 MLGRTKDQIRTTEQVNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 155 ~lgS~R~k~~~~e~~~~~~~~l~~~~Id~Lvi-IGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+|-..|.+..-++-.+.+.+..++++.+.+++ +.+.+.. .+..|.+.+++++..++|++++-|
T Consensus 18 vld~~~~r~~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~~-~~~~l~~~l~~~~~~~~i~~~~~~ 81 (142)
T TIGR01630 18 VLDAIYDKEPPPETERLVIRLLNAHRVNLAIIESNQEGKS-FGRSLVKILKEKGIRTPARAVYPS 81 (142)
T ss_pred EEEEEeccCChHHHHHHHHHHHHHcCCcceeeeccccchH-HHHHHHHHHHhhCCCCCceeeCCC
Confidence 44444566655677788888889999888543 2222222 233355556666777788888765
No 292
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.12 E-value=4.9e+02 Score=24.73 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+...+.++.+...++|++++...+.+.. .+ +.+.+. +++||.+=.+.+.. ..+ .++++|-
T Consensus 42 ~~~~~~i~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~--~ipvV~i~~~~~~~---~~~-~~v~~d~ 101 (270)
T cd06296 42 SPERQWVERLSARRTDGVILVTPELTSA---QR-AALRRT--GIPFVVVDPAGDPD---ADV-PSVGATN 101 (270)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCChH---HH-HHHhcC--CCCEEEEecccCCC---CCC-CEEEeCc
Confidence 4455778888999999999988764422 23 233333 47888753333211 111 4666665
No 293
>PRK10481 hypothetical protein; Provisional
Probab=21.07 E-value=7.6e+02 Score=24.48 Aligned_cols=174 Identities=16% Similarity=0.101 Sum_probs=94.8
Q ss_pred hhhcCCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhC-CCccCCCceeEecCccCC--------Cccc---cccCC
Q 011084 17 LRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSF-PHTYGQPLAHFLRATAKV--------PDAQ---IITEH 84 (494)
Q Consensus 17 ~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~f-p~~~~~~~~~~~~~~~~~--------~~~~---~~~~~ 84 (494)
=|..-.|.|-+.|... --.+.| . .|.-+.++|.+.| |.-...++++-.+++..+ ++-| ..-+.
T Consensus 14 Pr~dv~p~i~~~l~~~-~i~~~g-~---Ld~l~~~ei~~~~ap~~~~~~lvtrL~dG~~v~~s~~~v~~~lq~~i~~l~~ 88 (224)
T PRK10481 14 PRSDVLPLLTEYLDED-EITHAG-L---LDGLSREEIMAAYAPEAGEDVLVTRLNDGQQVHVSKQKVERDLQSVIEVLDN 88 (224)
T ss_pred CcchhhHHHHHhcCCc-ceEEec-c---cCCCCHHHHHHhcCCCCCCceeEEEecCCCEEEEEHHHHHHHHHHHHHHHHh
Confidence 3444555555555433 122233 2 2445678995555 444344577776664210 0000 00111
Q ss_pred CceEEEEEecCCCCCCcch----------hHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcc
Q 011084 85 PAIRVGIVFCGRQSPGGHN----------VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD 154 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~----------vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~ 154 (494)
..-..-|+.|=|+-||+++ .|.+++.++ ..+ +=+|+.-=+ .+..++....|+.. |+.
T Consensus 89 ~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al---~~g-~riGVitP~--------~~qi~~~~~kw~~~-G~~ 155 (224)
T PRK10481 89 QGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAI---VGG-HQVGVIVPV--------EEQLAQQAQKWQVL-QKP 155 (224)
T ss_pred CCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHh---cCC-CeEEEEEeC--------HHHHHHHHHHHHhc-CCc
Confidence 2245677777888888776 224444433 222 334443211 22223456778777 654
Q ss_pred cc-cccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEE
Q 011084 155 ML-GRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVV 213 (494)
Q Consensus 155 ~l-gS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VI 213 (494)
.. ........+++.+.++.+.|+..+.|.+|.-+-+=+...+..|.+.+ +++||
T Consensus 156 v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~l-----g~PVI 210 (224)
T PRK10481 156 PVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKAL-----DVPVL 210 (224)
T ss_pred eeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHH-----CcCEE
Confidence 22 11121235677888899999999999999988888876666666543 46776
No 294
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=20.84 E-value=4.1e+02 Score=21.36 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=33.7
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 158 RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 158 S~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
-+|+- .+.+-+..+++.+.+..-+..+|-||.. ++|-.|++.+.+.. +++++..|
T Consensus 10 GgR~~-~D~~~i~~~Ld~~~~~~~~~~lvhGga~--~GaD~iA~~wA~~~-gv~~~~~~ 64 (71)
T PF10686_consen 10 GGRDW-TDHELIWAALDKVHARHPDMVLVHGGAP--KGADRIAARWARER-GVPVIRFP 64 (71)
T ss_pred ECCcc-ccHHHHHHHHHHHHHhCCCEEEEECCCC--CCHHHHHHHHHHHC-CCeeEEeC
Confidence 34442 2445566666666666677888888873 46666666554333 46777766
No 295
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=20.77 E-value=1e+03 Score=25.19 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=62.4
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEc--cchh---hhhcCCeeecCHhHHhcccccC-CcccccccCC
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL--GGSE---GLFAQKTLEVTKEILSTYKNQG-GYDMLGRTKD 161 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~--~G~~---GL~~~~~ieLt~~~v~~~~n~G-G~~~lgS~R~ 161 (494)
+.=|+++|.++|..+ ..+.+.+. ..|..|.+-- .|.+ ..++..-=.+ ....+.|.+.+ .+ ++..
T Consensus 233 ~~RIl~tG~~~~~~~---~k~~~~iE--~~G~~VV~dd~c~g~r~~~~~v~e~~dp~-~aLA~~Yl~~~~~c----~~~~ 302 (380)
T TIGR02263 233 NCRVIICGMFCEQPP---LNLIKSIE--LSGCYIVDDDFIIVHRFENNDVALAGDPL-QNLALAFLHDSIST----AAKY 302 (380)
T ss_pred CCEEEEECcCCCCch---HHHHHHHH--HCCCEEEEecCCccchhhhccCCCCCCHH-HHHHHHHhhCCCCC----cccc
Confidence 456788897776664 34443332 2366776652 2322 2222110000 12344443221 11 1122
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEec--CcchHHH-HHHHHHHHHhcCCCCeEEEe
Q 011084 162 QIRTTEQVNAALTACKNLNLDGLVIIG--GVTSNTD-AAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~Id~LviIG--Gd~S~~~-A~~Lae~~~~~~~~i~VIgV 215 (494)
.+..+...+.+.+.++++++||+|..- |-+.... ...|.+++++.| |+++.+
T Consensus 303 ~~~~~~R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~G--IP~L~i 357 (380)
T TIGR02263 303 DDDEADKGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHG--IPQIAF 357 (380)
T ss_pred CCChhhHHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCC--CCEEEE
Confidence 232234678889999999999999874 4444333 456677776655 788887
No 296
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=1.5e+02 Score=32.49 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=33.2
Q ss_pred HHcCCCEEEEecCcch---------HHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 177 KNLNLDGLVIIGGVTS---------NTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 177 ~~~~Id~LviIGGd~S---------~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
..+.-+++++-|-+|| .+-...+++.+.++++.+-|+|-|.|
T Consensus 419 ~~l~~~gfivyG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPat 469 (519)
T KOG1357|consen 419 WELQKMGFIVYGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPAT 469 (519)
T ss_pred HhhhcCcEEEecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCc
Confidence 4567888999999999 34445677788888988899999976
No 297
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.77 E-value=2.8e+02 Score=25.19 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=60.2
Q ss_pred EEEEEecCCCCCCcc-hhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCH-hHHhcccccCCcccccccCCCCCC
Q 011084 88 RVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTK-EILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n-~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~-~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
+|-+-+.|||.=-.. +++..+++ ..+.+|+= .| ++.+. +.++.....+- +++|-|--.-.+
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~-----~~GfeVi~-----LG------~~v~~e~~v~aa~~~~a-diVglS~l~~~~ 65 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFT-----NAGFNVVN-----LG------VLSPQEEFIKAAIETKA-DAILVSSLYGHG 65 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHH-----HCCCEEEE-----CC------CCCCHHHHHHHHHHcCC-CEEEEecccccC
Confidence 566667777653322 23333332 23556641 11 23343 34555555533 677754433346
Q ss_pred hHHHHHHHHHHHHcCC-CEEEEecCcchHHH--HHHHHHHHHhcCCCCeEEEeeec
Q 011084 166 TEQVNAALTACKNLNL-DGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~I-d~LviIGGd~S~~~--A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
.+.+++..+.|++.++ +-.|++||.-..-. .....+.+++.|+ .-|.=|.|
T Consensus 66 ~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv--~~vF~pgt 119 (134)
T TIGR01501 66 EIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF--DRVFAPGT 119 (134)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCC--CEEECcCC
Confidence 7789999999999999 55577999754322 1222234555663 33434433
No 298
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.70 E-value=1.7e+02 Score=25.53 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=50.3
Q ss_pred cCCeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch-HHHHHHHHHHHHhcCC-CC
Q 011084 133 AQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS-NTDAAYLAETFAEAKC-PT 210 (494)
Q Consensus 133 ~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S-~~~A~~Lae~~~~~~~-~i 210 (494)
.++.-++-...+..+...+|+..+-.+-.-+ .+.+++..++.+-|.+++-+-+++ ...+..+.+.+++.+. ++
T Consensus 8 ~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp-----~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i 82 (122)
T cd02071 8 GLDGHDRGAKVIARALRDAGFEVIYTGLRQT-----PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDI 82 (122)
T ss_pred CCChhHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCC
Confidence 3444455566777788888987665554432 346777888999999988887764 4446677777777765 34
Q ss_pred e
Q 011084 211 K 211 (494)
Q Consensus 211 ~ 211 (494)
.
T Consensus 83 ~ 83 (122)
T cd02071 83 L 83 (122)
T ss_pred E
Confidence 4
No 299
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=20.68 E-value=2.6e+02 Score=28.67 Aligned_cols=80 Identities=18% Similarity=0.040 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEe
Q 011084 108 LYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187 (494)
Q Consensus 108 l~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviI 187 (494)
+.+.+++.+++.+++|.- | .++-+. .++-- -....+ +..|+ ...-+.-...-..+.++.+.+++++.|.++..
T Consensus 20 l~~~L~~~~~~~~~~~~~-~-~~~~~~-~~~~~-~~~~~l-~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~kPdivi~~ 92 (380)
T PRK00025 20 LIRALKARAPNLEFVGVG-G-PRMQAA-GCESL-FDMEEL-AVMGL--VEVLPRLPRLLKIRRRLKRRLLAEPPDVFIGI 92 (380)
T ss_pred HHHHHHhcCCCcEEEEEc-c-HHHHhC-CCccc-cCHHHh-hhccH--HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 888888777888998874 3 344332 22110 011111 11232 10011111112456788889999999999999
Q ss_pred cCcchHH
Q 011084 188 GGVTSNT 194 (494)
Q Consensus 188 GGd~S~~ 194 (494)
|-.+...
T Consensus 93 ~~~~~~~ 99 (380)
T PRK00025 93 DAPDFNL 99 (380)
T ss_pred CCCCCCH
Confidence 8544433
No 300
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=20.57 E-value=2.3e+02 Score=27.24 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+...++++.+...++|++++.+.+... ....+ +.+.+.+ ++||.+=
T Consensus 41 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~~~~i-~~~~~~~--iPvV~~~ 87 (273)
T cd06309 41 QENQISAIRSFIAQGVDVIILAPVVETG-WDPVL-KEAKAAG--IPVILVD 87 (273)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccc-chHHH-HHHHHCC--CCEEEEe
Confidence 4455677888888999999997765321 11123 2333344 6777753
No 301
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=20.50 E-value=2.8e+02 Score=25.46 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=67.8
Q ss_pred EEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeee-cCHhHHhcccccCCcccccccCCCCCChH
Q 011084 89 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLE-VTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 89 IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ie-Lt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
|-++.-|||.. ...+-+++.....+..++.+...+.=++..-+.. -.......|+..|| ||--.. .|.+
T Consensus 3 VLL~n~G~P~~-----~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~----~SPL~~-~t~~ 72 (159)
T cd03411 3 VLLVNLGGPES-----LEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGG----GSPLNE-ITRA 72 (159)
T ss_pred EEEEeCCCCCC-----HHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCC----CCccHH-HHHH
Confidence 55566688777 6777777777777777776655442222221111 12456677888886 332222 2567
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+.+++.+.|.+...+..|.+|=.=+.-.....-+.+.+.|+ -.+|.+|
T Consensus 73 q~~~l~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~-~~iivlP 120 (159)
T cd03411 73 QAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGV-DRIVVLP 120 (159)
T ss_pred HHHHHHHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCC-CEEEEEE
Confidence 78888888877665666666521111112222234555675 5899999
No 302
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=20.40 E-value=2.3e+02 Score=25.95 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=27.6
Q ss_pred EEEecCcchHHH--HHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH
Q 011084 184 LVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (494)
Q Consensus 184 LviIGGd~S~~~--A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~ 238 (494)
+.++|-.||=++ +..|.+.+.++|+++.+| .+|....+++ ..|.||..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi------K~~~~~~~~d-~~~~D~~~ 51 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI------KHDHHDFDID-KNGKDSYR 51 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------ecccccccCC-CccccHHH
Confidence 567787777555 477888887777654433 3443332322 34666544
No 303
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=20.35 E-value=1.2e+02 Score=27.12 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+.+.+.++++++|-+++-=-+.+...-..+.+++++.++ .|--||
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v--~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGV--RVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT---EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCC--EEEEeC
Confidence 3466777899999999998888888888888888887775 454455
No 304
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.28 E-value=7e+02 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEccchh
Q 011084 103 NVVWGLYDALKLHNPKSTLLGFLGGSE 129 (494)
Q Consensus 103 ~vI~gl~~~~~~~~~~~~v~Gf~~G~~ 129 (494)
.++..+...+++.+|+.++.|..+||-
T Consensus 59 ~~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 59 EVLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 344555556667788888888888865
No 305
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=20.08 E-value=4.4e+02 Score=26.98 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=47.7
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEcc---chhhhhcCCeeecCHhHHhcccccCCccccccc
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLG---GSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRT 159 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~---G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~ 159 (494)
..+++||+|+.||+ ++ ....++++.+...-+.+|.++.- +..++... .+-+=. .+ .
T Consensus 86 ~~~~~ri~vl~Sg~----g~-nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~-------------~gIp~~-~~--~ 144 (286)
T PRK13011 86 PAARPKVLIMVSKF----DH-CLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAW-------------HGIPFH-HF--P 144 (286)
T ss_pred cccCceEEEEEcCC----cc-cHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHH-------------hCCCEE-Ee--C
Confidence 34568999999995 22 23445555543333456666532 22222111 111111 11 0
Q ss_pred CCCCCChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 160 KDQIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 160 R~k~~~~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
+.. .+.++. .++.+.+++++.|.+|+. |.+..-....|..
T Consensus 145 ~~~-~~~~~~~~~~~~~l~~~~~Dlivla-gy~~il~~~~l~~ 185 (286)
T PRK13011 145 ITP-DTKPQQEAQVLDVVEESGAELVVLA-RYMQVLSPELCRK 185 (286)
T ss_pred CCc-CchhhhHHHHHHHHHHhCcCEEEEe-ChhhhCCHHHHhh
Confidence 111 222333 356788999999966655 5655544454543
Done!