Query 011084
Match_columns 494
No_of_seqs 254 out of 1140
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f48_A Diphosphate--fructose-6 100.0 3E-121 1E-125 987.5 46.7 475 9-492 1-490 (555)
2 3hno_A Pyrophosphate-dependent 100.0 5.8E-87 2E-91 700.7 35.2 343 86-494 3-363 (419)
3 2hig_A 6-phospho-1-fructokinas 100.0 5.3E-84 1.8E-88 685.5 36.3 352 66-492 80-435 (487)
4 1zxx_A 6-phosphofructokinase; 100.0 1.5E-83 5E-88 653.6 36.7 303 87-493 2-305 (319)
5 1pfk_A Phosphofructokinase; tr 100.0 2.2E-83 7.5E-88 652.6 35.9 304 86-493 2-307 (320)
6 4a3s_A 6-phosphofructokinase; 100.0 2.4E-80 8E-85 631.5 33.1 305 86-494 1-306 (319)
7 3o8l_A 6-phosphofructokinase, 100.0 1.2E-75 4.1E-80 649.4 31.7 324 84-491 398-755 (762)
8 3o8l_A 6-phosphofructokinase, 100.0 1.2E-75 4E-80 649.5 27.1 322 83-492 12-356 (762)
9 3o8o_B 6-phosphofructokinase s 100.0 2.7E-74 9.3E-79 638.8 34.4 318 86-490 3-344 (766)
10 3o8o_A 6-phosphofructokinase s 100.0 5.2E-74 1.8E-78 636.5 32.4 318 85-490 4-344 (787)
11 3o8o_A 6-phosphofructokinase s 100.0 1.2E-73 4E-78 633.7 31.8 323 83-489 390-770 (787)
12 3opy_B 6-phosphofructo-1-kinas 100.0 1.7E-73 6E-78 638.8 31.2 320 84-490 179-522 (941)
13 3opy_A 6-phosphofructo-1-kinas 100.0 4.2E-73 1.4E-77 633.9 32.6 319 85-491 209-550 (989)
14 3opy_B 6-phosphofructo-1-kinas 100.0 9.4E-73 3.2E-77 632.9 30.5 324 83-489 568-936 (941)
15 3o8o_B 6-phosphofructokinase s 100.0 1.2E-72 4E-77 625.8 30.8 323 84-489 391-760 (766)
16 3opy_A 6-phosphofructo-1-kinas 100.0 1.3E-71 4.3E-76 622.1 31.1 322 84-489 596-981 (989)
17 2an1_A Putative kinase; struct 93.3 0.14 4.7E-06 50.4 7.0 90 86-216 5-94 (292)
18 2i2c_A Probable inorganic poly 89.9 0.25 8.7E-06 48.3 4.6 47 168-217 16-69 (272)
19 3m9w_A D-xylose-binding peripl 88.6 13 0.00046 35.3 15.9 105 86-236 2-106 (313)
20 3g1w_A Sugar ABC transporter; 84.9 26 0.00089 33.0 17.4 132 85-263 3-134 (305)
21 1z0s_A Probable inorganic poly 84.0 0.81 2.8E-05 45.2 4.3 53 180-250 68-122 (278)
22 1oj7_A Hypothetical oxidoreduc 81.2 2 6.8E-05 44.3 6.2 55 165-219 91-161 (408)
23 3uhj_A Probable glycerol dehyd 79.7 3 0.0001 42.8 6.9 49 165-218 91-139 (387)
24 3iv7_A Alcohol dehydrogenase I 79.4 3 0.0001 42.5 6.7 52 165-222 73-124 (364)
25 1jq5_A Glycerol dehydrogenase; 79.4 3.9 0.00013 41.4 7.6 48 166-218 72-119 (370)
26 3jzd_A Iron-containing alcohol 78.1 3.3 0.00011 42.0 6.6 50 165-219 74-123 (358)
27 3hl0_A Maleylacetate reductase 77.6 4.3 0.00015 41.1 7.3 50 165-219 72-121 (353)
28 3l49_A ABC sugar (ribose) tran 77.5 30 0.001 32.2 12.9 105 85-237 4-108 (291)
29 1u0t_A Inorganic polyphosphate 77.0 1.7 5.7E-05 43.1 3.9 33 179-216 74-106 (307)
30 3ox4_A Alcohol dehydrogenase 2 76.9 4.8 0.00016 41.1 7.4 58 165-222 73-143 (383)
31 1rrm_A Lactaldehyde reductase; 75.9 4.8 0.00017 40.9 7.1 57 165-221 73-144 (386)
32 3tb6_A Arabinose metabolism tr 74.2 13 0.00043 34.8 9.2 105 87-236 16-121 (298)
33 3clh_A 3-dehydroquinate syntha 73.1 4.7 0.00016 40.5 6.1 52 165-219 67-121 (343)
34 3pfn_A NAD kinase; structural 73.0 2 7E-05 44.0 3.4 122 83-249 35-162 (365)
35 1o2d_A Alcohol dehydrogenase, 72.8 4.9 0.00017 40.8 6.2 58 165-222 83-153 (371)
36 3ksm_A ABC-type sugar transpor 72.7 22 0.00075 32.7 10.4 105 88-236 2-107 (276)
37 3jy6_A Transcriptional regulat 72.7 23 0.00079 32.9 10.6 103 84-236 5-107 (276)
38 3l6u_A ABC-type sugar transpor 72.7 19 0.00066 33.6 10.1 107 84-236 6-112 (293)
39 1xah_A Sadhqs, 3-dehydroquinat 72.6 4.7 0.00016 40.6 6.0 52 165-219 72-126 (354)
40 3bfj_A 1,3-propanediol oxidore 72.2 7.8 0.00027 39.4 7.6 55 165-219 77-144 (387)
41 1yt5_A Inorganic polyphosphate 71.9 1.7 5.9E-05 41.9 2.5 32 179-216 40-71 (258)
42 3brq_A HTH-type transcriptiona 70.4 38 0.0013 31.4 11.6 104 84-236 17-123 (296)
43 3afo_A NADH kinase POS5; alpha 69.9 1.8 6E-05 44.8 2.1 33 179-216 113-146 (388)
44 3egc_A Putative ribose operon 69.8 9.3 0.00032 36.0 7.1 104 84-236 6-109 (291)
45 3rf7_A Iron-containing alcohol 69.3 7.1 0.00024 39.9 6.5 56 165-220 91-162 (375)
46 1sg6_A Pentafunctional AROM po 68.9 7.3 0.00025 39.9 6.5 52 165-219 85-141 (393)
47 1vlj_A NADH-dependent butanol 68.8 7.9 0.00027 39.7 6.8 55 165-219 86-153 (407)
48 3uug_A Multiple sugar-binding 67.9 33 0.0011 32.6 10.8 105 86-236 3-108 (330)
49 2qv7_A Diacylglycerol kinase D 67.7 5.6 0.00019 39.6 5.3 48 174-224 74-121 (337)
50 3o74_A Fructose transport syst 67.4 15 0.0005 33.9 7.9 103 86-236 2-104 (272)
51 3ce9_A Glycerol dehydrogenase; 66.9 4.8 0.00016 40.4 4.6 52 165-222 74-125 (354)
52 3dbi_A Sugar-binding transcrip 65.9 30 0.001 33.3 10.1 105 84-236 59-165 (338)
53 3gbv_A Putative LACI-family tr 65.8 58 0.002 30.3 11.9 110 84-236 6-117 (304)
54 3rot_A ABC sugar transporter, 65.4 35 0.0012 32.1 10.3 94 86-219 3-96 (297)
55 3okf_A 3-dehydroquinate syntha 64.2 8.7 0.0003 39.6 5.9 52 165-219 105-159 (390)
56 1ujn_A Dehydroquinate synthase 64.1 8.9 0.0003 38.6 5.9 52 165-219 66-120 (348)
57 3l8m_A Probable thiamine pyrop 63.1 37 0.0013 31.7 9.7 81 117-201 21-115 (212)
58 3k4h_A Putative transcriptiona 62.8 96 0.0033 28.6 13.0 105 84-236 6-115 (292)
59 3qbe_A 3-dehydroquinate syntha 62.4 10 0.00036 38.6 6.1 52 165-219 85-139 (368)
60 2bon_A Lipid kinase; DAG kinas 62.2 9.5 0.00033 37.9 5.7 47 176-224 78-125 (332)
61 3s4y_A Thiamin pyrophosphokina 62.1 37 0.0013 32.5 9.7 104 86-202 20-149 (247)
62 3o1i_D Periplasmic protein TOR 60.1 33 0.0011 32.1 8.9 107 85-236 4-115 (304)
63 1kq3_A Glycerol dehydrogenase; 59.4 7.6 0.00026 39.3 4.5 48 165-218 80-127 (376)
64 3kjx_A Transcriptional regulat 59.1 75 0.0026 30.6 11.6 88 84-215 66-153 (344)
65 3s40_A Diacylglycerol kinase; 58.2 9.7 0.00033 37.3 4.9 50 171-224 55-104 (304)
66 1ta9_A Glycerol dehydrogenase; 57.3 9.3 0.00032 40.0 4.8 48 165-218 131-178 (450)
67 2gru_A 2-deoxy-scyllo-inosose 57.2 13 0.00044 37.6 5.8 52 165-219 76-130 (368)
68 3auf_A Glycinamide ribonucleot 55.2 52 0.0018 31.1 9.3 104 81-201 17-121 (229)
69 1meo_A Phosophoribosylglycinam 54.6 44 0.0015 31.1 8.6 94 87-200 1-98 (209)
70 3lm8_A Thiamine pyrophosphokin 52.3 62 0.0021 30.4 9.3 84 118-204 25-122 (222)
71 8abp_A L-arabinose-binding pro 50.6 75 0.0026 29.6 9.8 87 86-215 2-88 (306)
72 3k9c_A Transcriptional regulat 49.4 35 0.0012 32.0 7.1 101 84-236 10-110 (289)
73 3kke_A LACI family transcripti 48.5 65 0.0022 30.3 8.9 103 84-236 13-115 (303)
74 3d8u_A PURR transcriptional re 48.3 38 0.0013 31.1 7.1 102 86-236 3-104 (275)
75 3av3_A Phosphoribosylglycinami 47.7 48 0.0016 30.8 7.6 99 86-201 3-102 (212)
76 3cs3_A Sugar-binding transcrip 47.0 1.1E+02 0.0036 28.3 10.1 31 84-114 6-36 (277)
77 3nxk_A Cytoplasmic L-asparagin 46.7 1.6E+02 0.0053 29.5 11.7 50 165-216 70-122 (334)
78 3hcw_A Maltose operon transcri 45.4 62 0.0021 30.3 8.2 58 167-235 55-114 (295)
79 3h5o_A Transcriptional regulat 44.2 1.3E+02 0.0045 28.7 10.6 88 84-215 60-147 (339)
80 3k94_A Thiamin pyrophosphokina 43.7 1.1E+02 0.0038 28.7 9.6 72 118-192 24-104 (223)
81 1jkx_A GART;, phosphoribosylgl 43.3 80 0.0027 29.4 8.4 98 87-201 1-99 (212)
82 3hs3_A Ribose operon repressor 43.3 36 0.0012 31.7 6.1 98 84-236 8-107 (277)
83 3p9x_A Phosphoribosylglycinami 42.8 71 0.0024 29.9 7.9 99 86-201 2-101 (211)
84 3gv0_A Transcriptional regulat 41.9 21 0.00071 33.6 4.2 103 85-236 7-111 (288)
85 3e3m_A Transcriptional regulat 41.3 45 0.0015 32.4 6.7 88 84-215 68-155 (355)
86 1iv0_A Hypothetical protein; r 39.2 23 0.00077 29.2 3.4 32 193-224 37-68 (98)
87 2pn1_A Carbamoylphosphate synt 39.0 2.3E+02 0.0078 27.0 11.4 48 165-215 57-104 (331)
88 2kwv_A RAD30 homolog B, DNA po 38.8 13 0.00043 26.7 1.5 19 363-381 17-35 (48)
89 2vk2_A YTFQ, ABC transporter p 38.2 1.3E+02 0.0044 28.2 9.2 89 86-216 2-90 (306)
90 1qpz_A PURA, protein (purine n 37.9 1.1E+02 0.0038 29.2 8.9 105 85-236 57-161 (340)
91 1o7j_A L-asparaginase; atomic 37.2 2.4E+02 0.0083 27.9 11.3 50 165-216 66-119 (327)
92 4grd_A N5-CAIR mutase, phospho 37.0 52 0.0018 30.0 5.7 47 165-218 52-99 (173)
93 2wlt_A L-asparaginase; hydrola 36.7 2.3E+02 0.008 28.0 11.2 50 165-216 66-119 (332)
94 4pga_A Glutaminase-asparaginas 36.4 66 0.0022 32.3 7.0 50 165-216 71-124 (337)
95 3lkv_A Uncharacterized conserv 36.3 67 0.0023 30.8 6.9 94 84-218 6-99 (302)
96 3lp6_A Phosphoribosylaminoimid 35.9 42 0.0014 30.7 4.9 48 165-218 47-94 (174)
97 1tjy_A Sugar transport protein 35.9 1.7E+02 0.0059 27.6 9.8 106 86-236 3-109 (316)
98 2rgy_A Transcriptional regulat 35.7 61 0.0021 30.2 6.4 103 85-236 7-112 (290)
99 3o1l_A Formyltetrahydrofolate 34.8 1.3E+02 0.0044 29.7 8.8 99 84-201 103-201 (302)
100 3mjf_A Phosphoribosylamine--gl 34.6 30 0.001 35.5 4.3 44 167-215 54-97 (431)
101 1ccw_A Protein (glutamate muta 34.2 79 0.0027 27.0 6.4 89 87-191 4-94 (137)
102 1vp8_A Hypothetical protein AF 33.9 69 0.0024 29.9 6.1 46 165-216 28-73 (201)
103 2yxb_A Coenzyme B12-dependent 33.9 69 0.0024 28.3 6.1 93 85-193 17-111 (161)
104 2h3h_A Sugar ABC transporter, 33.5 2.4E+02 0.008 26.4 10.3 63 166-236 43-105 (313)
105 2rjo_A Twin-arginine transloca 33.1 2.4E+02 0.0082 26.6 10.4 94 85-220 4-99 (332)
106 2him_A L-asparaginase 1; hydro 33.0 1E+02 0.0035 31.2 7.8 52 165-217 84-137 (358)
107 3e61_A Putative transcriptiona 32.6 2.8E+02 0.0097 25.1 11.6 99 85-236 7-106 (277)
108 3qk7_A Transcriptional regulat 32.6 41 0.0014 31.6 4.6 102 85-236 5-110 (294)
109 1xmp_A PURE, phosphoribosylami 31.9 36 0.0012 31.0 3.8 48 165-218 51-98 (170)
110 3oow_A Phosphoribosylaminoimid 31.8 63 0.0021 29.3 5.3 47 165-217 45-91 (166)
111 3trh_A Phosphoribosylaminoimid 31.6 40 0.0014 30.7 4.0 48 165-218 46-93 (169)
112 3c3k_A Alanine racemase; struc 31.6 76 0.0026 29.5 6.3 102 85-236 7-108 (285)
113 3brs_A Periplasmic binding pro 31.5 1.8E+02 0.0062 26.6 9.0 107 86-236 5-113 (289)
114 3kuu_A Phosphoribosylaminoimid 31.4 39 0.0013 30.9 3.9 48 165-218 52-99 (174)
115 3ors_A N5-carboxyaminoimidazol 31.3 42 0.0014 30.4 4.1 84 165-276 43-132 (163)
116 4ds3_A Phosphoribosylglycinami 30.9 1.4E+02 0.0046 27.8 7.8 95 86-200 7-105 (209)
117 1dbq_A Purine repressor; trans 30.7 2.3E+02 0.008 25.8 9.6 105 85-236 6-110 (289)
118 2d6f_A Glutamyl-tRNA(Gln) amid 30.3 1.1E+02 0.0037 31.9 7.6 50 165-216 149-201 (435)
119 3h75_A Periplasmic sugar-bindi 30.3 3.1E+02 0.011 26.1 10.7 30 86-115 3-33 (350)
120 1jak_A Beta-N-acetylhexosamini 29.8 2.6E+02 0.0089 29.5 10.7 106 152-264 161-321 (512)
121 3apt_A Methylenetetrahydrofola 29.8 42 0.0014 33.2 4.2 47 158-206 79-137 (310)
122 3miz_A Putative transcriptiona 29.7 2E+02 0.0068 26.7 9.0 104 84-236 11-115 (301)
123 3dnf_A ISPH, LYTB, 4-hydroxy-3 29.4 62 0.0021 32.1 5.3 54 166-221 196-249 (297)
124 1agx_A Glutaminase-asparaginas 29.3 79 0.0027 31.5 6.2 49 165-215 63-115 (331)
125 2x7x_A Sensor protein; transfe 29.2 1.2E+02 0.004 28.9 7.4 63 166-236 48-110 (325)
126 2pbq_A Molybdenum cofactor bio 29.2 40 0.0014 30.4 3.7 57 133-191 19-79 (178)
127 1vdr_A DHFR, dihydrofolate red 28.4 29 0.001 30.6 2.6 52 168-226 81-132 (162)
128 3gyb_A Transcriptional regulat 28.4 1.5E+02 0.005 27.2 7.6 39 85-125 4-42 (280)
129 2ywr_A Phosphoribosylglycinami 28.3 1.6E+02 0.0055 27.2 7.8 96 87-199 2-98 (216)
130 2fep_A Catabolite control prot 28.1 94 0.0032 29.0 6.3 104 84-236 14-117 (289)
131 3jvd_A Transcriptional regulat 28.0 98 0.0034 29.7 6.6 104 76-235 54-157 (333)
132 3ihk_A Thiamin pyrophosphokina 28.0 1.5E+02 0.0053 27.5 7.7 87 90-192 4-100 (218)
133 3fst_A 5,10-methylenetetrahydr 27.8 57 0.0019 32.3 4.8 57 158-216 90-153 (304)
134 2v5c_A O-GLCNACASE NAGJ; glyco 27.3 5.1E+02 0.018 27.8 12.6 86 152-249 153-252 (594)
135 3szu_A ISPH, 4-hydroxy-3-methy 27.1 92 0.0032 31.3 6.1 41 166-208 212-252 (328)
136 3h5t_A Transcriptional regulat 26.9 64 0.0022 31.4 5.0 57 169-236 117-173 (366)
137 1wls_A L-asparaginase; structu 26.8 1.3E+02 0.0044 29.9 7.3 51 165-216 56-108 (328)
138 1o4v_A Phosphoribosylaminoimid 26.6 40 0.0014 31.1 3.2 48 165-219 53-101 (183)
139 1nu0_A Hypothetical protein YQ 26.5 44 0.0015 29.2 3.3 28 196-223 42-69 (138)
140 1hyq_A MIND, cell division inh 26.2 3.7E+02 0.013 24.4 12.3 25 188-212 12-36 (263)
141 2gzm_A Glutamate racemase; enz 26.0 1.7E+02 0.0058 27.8 7.8 91 88-215 5-95 (267)
142 3bil_A Probable LACI-family tr 26.0 2.1E+02 0.0071 27.5 8.6 103 85-236 65-168 (348)
143 1mkz_A Molybdenum cofactor bio 26.0 75 0.0026 28.4 4.9 29 164-192 52-81 (172)
144 3obi_A Formyltetrahydrofolate 25.8 2.6E+02 0.0089 27.2 9.1 99 84-201 87-186 (288)
145 3ksm_A ABC-type sugar transpor 25.8 2E+02 0.0069 25.9 8.1 104 106-215 112-220 (276)
146 3huu_A Transcription regulator 25.7 81 0.0028 29.6 5.4 104 84-236 20-128 (305)
147 2i4r_A V-type ATP synthase sub 25.6 51 0.0017 27.3 3.4 31 303-334 39-69 (102)
148 2g0t_A Conserved hypothetical 25.3 3.2E+02 0.011 27.4 9.9 135 143-287 135-279 (350)
149 2fn9_A Ribose ABC transporter, 25.2 1.3E+02 0.0045 27.7 6.7 104 87-236 3-107 (290)
150 1x60_A Sporulation-specific N- 25.0 1.5E+02 0.0051 22.4 5.9 46 164-209 18-72 (79)
151 2o20_A Catabolite control prot 24.9 1.4E+02 0.0048 28.4 7.0 103 85-236 62-164 (332)
152 1wsa_A Asparaginase, asparagin 24.8 88 0.003 31.2 5.6 49 165-215 64-116 (330)
153 1u11_A PURE (N5-carboxyaminoim 24.5 47 0.0016 30.6 3.2 47 165-218 61-108 (182)
154 4b4k_A N5-carboxyaminoimidazol 24.4 55 0.0019 30.1 3.6 46 165-217 62-108 (181)
155 3sho_A Transcriptional regulat 23.7 1.9E+02 0.0065 25.1 7.2 48 165-216 25-72 (187)
156 3rg8_A Phosphoribosylaminoimid 23.6 91 0.0031 28.0 4.8 47 165-217 42-89 (159)
157 4b4t_W RPN10, 26S proteasome r 23.2 1.5E+02 0.0051 28.7 6.7 50 167-216 89-145 (268)
158 3q12_A Pantoate--beta-alanine 23.0 1.1E+02 0.0036 30.2 5.6 38 251-288 19-57 (287)
159 1t57_A Conserved protein MTH16 22.1 94 0.0032 29.1 4.7 45 165-216 36-80 (206)
160 3tqr_A Phosphoribosylglycinami 22.1 2.7E+02 0.0092 25.9 8.1 96 85-201 4-103 (215)
161 2omk_A Hypothetical protein; s 22.1 4.9E+02 0.017 24.3 11.3 102 87-203 32-147 (231)
162 3mel_A Thiamin pyrophosphokina 21.7 1.2E+02 0.004 28.4 5.5 91 90-192 4-104 (222)
163 2qip_A Protein of unknown func 21.3 38 0.0013 30.0 1.9 49 168-219 95-145 (165)
164 2i2x_B MTAC, methyltransferase 21.2 1.8E+02 0.006 27.6 6.8 92 85-193 122-215 (258)
165 2dri_A D-ribose-binding protei 21.2 3E+02 0.01 25.0 8.4 104 87-236 2-105 (271)
166 1uta_A FTSN, MSGA, cell divisi 21.1 1.2E+02 0.0042 23.2 4.7 48 164-211 18-74 (81)
167 2ioy_A Periplasmic sugar-bindi 20.8 1.6E+02 0.0055 27.1 6.4 104 87-236 2-105 (283)
168 3mxt_A Pantothenate synthetase 20.4 1.3E+02 0.0044 29.6 5.6 37 251-288 19-56 (285)
169 2iks_A DNA-binding transcripti 20.4 87 0.003 29.1 4.4 105 84-236 18-122 (293)
170 3nkl_A UDP-D-quinovosamine 4-d 20.3 1.3E+02 0.0044 24.9 5.1 98 85-217 3-100 (141)
171 2q8u_A Exonuclease, putative; 20.2 85 0.0029 30.5 4.4 51 167-218 48-105 (336)
172 3nrb_A Formyltetrahydrofolate 20.1 2.9E+02 0.0099 26.8 8.2 100 84-202 86-186 (287)
173 3k8d_A 3-deoxy-manno-octuloson 20.0 5.5E+02 0.019 24.1 11.7 115 87-217 18-146 (264)
No 1
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=3.2e-121 Score=987.49 Aligned_cols=475 Identities=38% Similarity=0.712 Sum_probs=448.2
Q ss_pred CCCChhhhhhhcCCCCCCcCCCCCc--eeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCc
Q 011084 9 RELSGLQQLRSLYQPELPPCLQGTT--VRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA 86 (494)
Q Consensus 9 ~~~s~l~~~r~~~~p~lp~~l~~~~--~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (494)
|++|+||++|+.|+|+||++|++.. ++++.++.+++. .|+++|+++|||||++|.++|+++.. . ...+++
T Consensus 1 ~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~p~~~~~~~~~---~---~~~~~~ 72 (555)
T 2f48_A 1 MNTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAI--QDRQALKEFFKNTYGLPIISFTEGES---S---LSFSKA 72 (555)
T ss_dssp ---CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCS--SCHHHHHHHTTTTTTCCCEEEEESCC---C---CSCCSC
T ss_pred CCCCHHHHhhhcCCCCCCHHHhCCccceeeecCCcccCc--cCHHHHHHhCccccCCCcEEEecCCc---c---cccCCC
Confidence 6799999999999999999999864 899999998877 99999999999999999999998751 1 135677
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
+||||+|||||||||||||+|++++++..+++++||||++||+||+++++++|+++.|+.|+++|||++|||+|.++.++
T Consensus 73 ~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~ 152 (555)
T 2f48_A 73 LNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETE 152 (555)
T ss_dssp CEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSH
T ss_pred cEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCH
Confidence 99999999999999999999999998888889999999999999999999999999999999999944999999999899
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHH
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 246 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~ 246 (494)
+++++++++|++++||+||+||||||+++|+.|++++++++++++||||||||||||+++.||+|||||||+++++++|+
T Consensus 153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId 232 (555)
T 2f48_A 153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIG 232 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 011084 247 NVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 326 (494)
Q Consensus 247 nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~E 326 (494)
+|++||.|+++||||||||||+||||||+||||++||+|||||++++++++|.+++++|++.|++|+.+||+|+||||||
T Consensus 233 ~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaE 312 (555)
T 2f48_A 233 NLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPE 312 (555)
T ss_dssp HHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999999998999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHhhcCCC----------CCcccccCChhhhhhhccChhHHHhhhh---cCCCCCCCcccchh
Q 011084 327 GLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQLL---LQPESDDSAQLSQI 393 (494)
Q Consensus 327 Gl~~~~~~~~~li~e~~~~~~~~~~----------~~~~~~~l~~~~~~~f~~lp~~i~~~l~---~~~D~~G~~~~~~i 393 (494)
|+++++|+++.|+.|++++++++.. .+.+.++||||++++|.+||..|++||+ .++|+|||+|+++|
T Consensus 313 G~~~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i 392 (555)
T 2f48_A 313 GLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRV 392 (555)
T ss_dssp TGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTS
T ss_pred CCccccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccc
Confidence 9999999999999999998876411 0245678999999999999999999997 78999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 011084 394 ETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNP 473 (494)
Q Consensus 394 ~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~ 473 (494)
+||++|+++|+++|++++.++.|+++ |++|+|+|||+||||.||+|||.||++||+.|++++++|+||+|++++|++.+
T Consensus 393 ~t~~~L~~~v~~~l~~~~~~~~~~~~-~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~ 471 (555)
T 2f48_A 393 PTEKLFIEMIQSRLNDMKKRGEYKGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK 471 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCCSC-CCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHHHhcccCcccc-eeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 99999999999999999888999987 99999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEccccHHhHhcccc
Q 011084 474 ANKWRCGAAPITVRFSFFS 492 (494)
Q Consensus 474 ~~~w~~~~vPl~~~~~~~~ 492 (494)
+|+|++.++||++|||+||
T Consensus 472 ~~~w~~~~vPl~~~~n~ek 490 (555)
T 2f48_A 472 PTDWIAGGVPLTMLMNMEE 490 (555)
T ss_dssp GGGCEEEEEEGGGGEEEEE
T ss_pred ccceEEEeeeHHHHhhhhh
Confidence 9999999999999999986
No 2
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=5.8e-87 Score=700.67 Aligned_cols=343 Identities=16% Similarity=0.226 Sum_probs=294.3
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCC-CCEEEEEccchhhhhcCCeeecC---HhHHhcccccCCcccccccCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNP-KSTLLGFLGGSEGLFAQKTLEVT---KEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~-~~~v~Gf~~G~~GL~~~~~ieLt---~~~v~~~~n~GG~~~lgS~R~ 161 (494)
++||||+|||||||||||||+|+++.+..... ..+||||++||+||+++++++|+ +++++.|+++||| +|||+|.
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGt-iLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSG-AFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSC-TTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCc-eecCCCC
Confidence 47999999999999999999999999875432 33999999999999999999995 4589999999999 9999999
Q ss_pred CC----CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhH
Q 011084 162 QI----RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (494)
Q Consensus 162 k~----~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA 237 (494)
++ .+++++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||++|| +|||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD--~t~GFdTA 159 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITD--CCPGFGSV 159 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSS--SCTTHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCC--CCCCchHH
Confidence 87 5789999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccC---ceEEEEecCCCccHHHHHhhhh-----cCCcEEEeCCcchhhcccHHHHHHHHHHHH
Q 011084 238 CKVNSQLISNVCTDALSAEK---YYYFIRLMGRRASHVALECTLQ-----SHPNMVILGEEVAASKLTLFDLTKQICDAV 309 (494)
Q Consensus 238 ~~~~~~~I~nl~~da~S~~k---~~~~VevMGR~ag~lAl~~aLa-----t~p~~ilIpEe~~~~~~tL~~i~~~i~~~i 309 (494)
+++++++|+++..|+.|+++ +|||||+|||+||||||+|||| ++||+|||||+++ ++ +.+++.|
T Consensus 160 ~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f----~~----~~~~~~i 231 (419)
T 3hno_A 160 AKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISF----DK----QKFLAKV 231 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCC----CH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCC----CH----HHHHHHH
Confidence 99999999999889888765 7999999999999999999999 7999999999985 33 4557777
Q ss_pred HHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcc
Q 011084 310 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQ 389 (494)
Q Consensus 310 ~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~ 389 (494)
++|+++ ++|+||+||||+.+..++. +.++ ..+|+|||++
T Consensus 232 ~~~~~~-~~~~iIvVaEG~~~~~g~~--------------------------------------i~~~--~~~D~~G~~~ 270 (419)
T 3hno_A 232 DSCVKK-FGYCSVVVSEGVKGDDGKF--------------------------------------LSDQ--GVRDAFGHAQ 270 (419)
T ss_dssp HHHHHH-HSCEEEEEETTCCCSSSCC------------------------------------------------------
T ss_pred HHHHHh-CCCEEEEEeCCCcccCCcc--------------------------------------hhcc--cccccccCcc
Confidence 777765 6799999999998743210 1111 3579999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEE
Q 011084 390 LSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSL--PSKFDCDYAYVLGHICYHILAAGLNGYMATV 467 (494)
Q Consensus 390 ~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~--PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i 467 (494)
++++ +++|+++|++++ | +++|+++|||+||||. ||+|||.||++||..|++++++|++|+|+++
T Consensus 271 l~gi--~~~la~~i~~~~------g------~~~R~~~lGh~QRgg~p~ps~~Dr~la~~lG~~Av~~~~~G~~g~mv~~ 336 (419)
T 3hno_A 271 LGGV--APVVASMVKEGL------G------LKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTI 336 (419)
T ss_dssp -CCS--HHHHHHHHHHHH------C------CCEEEEECTHHHHSCGGGCBHHHHHHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred cCcH--HHHHHHHHHHHh------C------CceEEcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9996 566777666654 2 7899999999999998 8999999999999999999999999999999
Q ss_pred ecCCCCCcceEEccccHHhHhccccCC
Q 011084 468 TNLKNPANKWRCGAAPITVRFSFFSIV 494 (494)
Q Consensus 468 ~~~~~~~~~w~~~~vPl~~~~~~~~~~ 494 (494)
++...++|+|++..+||.++++.+|-|
T Consensus 337 ~~~~~~~y~~~~~~vpl~~~~~~~k~v 363 (419)
T 3hno_A 337 ERISARPYQWKVGMAQLSQVANVEKMM 363 (419)
T ss_dssp EEEEC-CCEEEEEEEEHHHHSSCCCCC
T ss_pred ECCCCCccccEEEEeeHHHHhcccCCC
Confidence 999999999999999999999998754
No 3
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=5.3e-84 Score=685.54 Aligned_cols=352 Identities=20% Similarity=0.251 Sum_probs=310.4
Q ss_pred eeEecCccCCCccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhc---CCeeecCHh
Q 011084 66 AHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA---QKTLEVTKE 142 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~---~~~ieLt~~ 142 (494)
..|++++ |+...++.++.+||||+|||||||||||||+|+++++...+...+||||++||+||++ +++++|+|+
T Consensus 80 ~~~~~ag---pr~~i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~ 156 (487)
T 2hig_A 80 LLCELAA---ARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRG 156 (487)
T ss_dssp CEEEECC---CBSEESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHH
T ss_pred HHHHHcC---CcceeeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHH
Confidence 4688876 8999999889999999999999999999999999998754444599999999999964 699999999
Q ss_pred HHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 143 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 143 ~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
.++.|+++||+ +|||+|.+.+ .++++++|++++||+||+||||||+++|+.|++++.+++++++|||||||||||
T Consensus 157 ~V~~i~~~GGT-iLGTsR~~~~----~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDND 231 (487)
T 2hig_A 157 RVTNIHHYGGT-ILGSSRGPQD----PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDND 231 (487)
T ss_dssp HHTTGGGSSSC-SSCCCCSCCC----HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSS
T ss_pred HHHHHHhCCCC-eeccCCCCCC----HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCC
Confidence 99999999998 9999999863 359999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcEEEeCCcchhhcccHHHH
Q 011084 223 LKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNMVILGEEVAASKLTLFDL 301 (494)
Q Consensus 223 l~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~-p~~ilIpEe~~~~~~tL~~i 301 (494)
|++|| +|||||||+++++++|++|++||.||+++|||||||||+||||||+||||++ ||+|||||+++ +|+
T Consensus 232 l~gTD--~T~GFdTAv~~~~eaId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~----~l~-- 303 (487)
T 2hig_A 232 LSFSH--RTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI----SEQ-- 303 (487)
T ss_dssp CCCSS--CCTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCC----CHH--
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCC----CHH--
Confidence 99998 9999999999999999999999999988899999999999999999999999 99999999974 544
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcC
Q 011084 302 TKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQ 381 (494)
Q Consensus 302 ~~~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~ 381 (494)
.+++.|++|++ +++|+|||||||+...+. .. ...
T Consensus 304 --~i~~~i~~r~~-~k~~~IIvVaEGag~~~~----------------------------------~~---------~~~ 337 (487)
T 2hig_A 304 --EVMSLLERRFC-HSRSCVIIVAEGFGQDWG----------------------------------RG---------SGG 337 (487)
T ss_dssp --HHHHHHHHHTT-SCSEEEEEEETTTTGGGC----------------------------------CC-----------C
T ss_pred --HHHHHHHHHHh-cCCcEEEEEeCCCccccc----------------------------------cc---------ccc
Confidence 55788888875 799999999999853210 00 025
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 011084 382 PESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN 461 (494)
Q Consensus 382 ~D~~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t 461 (494)
+|++||++++++ .++|+++++++++++..+ ..+|++|+++|||+||||.||+|||.||++||..|++++++|.+
T Consensus 338 ~Da~G~~~l~~i--~~~l~~~i~~~~~~~g~~----~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~t 411 (487)
T 2hig_A 338 YDASGNKKLIDI--GVILTEKVKAFLKANKSR----YPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGAT 411 (487)
T ss_dssp BCTTSCBCCCCH--HHHHHHHHHHHHHTTTTT----SSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred cccccCcchhHH--HHHHHHHHHHHHhhcCcc----ccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 799999999985 477787777776544211 11268999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCcceEEccccHHhHhcccc
Q 011084 462 GYMATVTNLKNPANKWRCGAAPITVRFSFFS 492 (494)
Q Consensus 462 G~mv~i~~~~~~~~~w~~~~vPl~~~~~~~~ 492 (494)
|+|+++++. ++..+||.++++.+|
T Consensus 412 g~mVgi~~~-------~i~~vPl~ev~~~~k 435 (487)
T 2hig_A 412 GCIIAMRHN-------NYILVPIKVATSVRR 435 (487)
T ss_dssp SEEEEEETT-------EEEEEEHHHHTTEEE
T ss_pred CEEEEEECC-------EEEEEEHHHHHccCC
Confidence 999999986 477789999887655
No 4
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1.5e-83 Score=653.63 Aligned_cols=303 Identities=22% Similarity=0.347 Sum_probs=275.4
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC-CCC
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 165 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k-~~~ 165 (494)
+||||+|||||||||||||+++++++. +++++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~~ 78 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAI--ANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGT-FLYSARYPEFAE 78 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHH--TTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSC-TTCCCCCGGGTS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCc-ccccCCCCccCC
Confidence 699999999999999999999999975 46789999999999999999999999999999999998 99999987 567
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHH
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 245 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I 245 (494)
++++++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++|| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~ai 150 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTD--ATIGYDTACMTAMDAI 150 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCc--CCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 5899999999999999998 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 011084 246 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 325 (494)
Q Consensus 246 ~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~ 325 (494)
++++.+|.|++ ||||||+|||+||||||+||||++||+|||||+++ ++ +++++.|++|+++||+|+||+||
T Consensus 151 d~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~----~~----~~i~~~i~~~~~~gk~~~iIvva 221 (319)
T 1zxx_A 151 DKIRDTASSHH-RVFIVNVMGRNCGDIAMRVGVACGADAIVIPERPY----DV----EEIANRLKQAQESGKDHGLVVVA 221 (319)
T ss_dssp HHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC----CH----HHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 99988888775 79999999999999999999999999999999974 44 45688889999899999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 011084 326 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 405 (494)
Q Consensus 326 EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~ 405 (494)
||+.+ .+.|+++++
T Consensus 222 EG~~~-----------------------------------------------------------------~~~l~~~i~- 235 (319)
T 1zxx_A 222 EGVMT-----------------------------------------------------------------ADQFMAELK- 235 (319)
T ss_dssp TTTCC-----------------------------------------------------------------HHHHHHHHH-
T ss_pred CCcCh-----------------------------------------------------------------HHHHHHHHH-
Confidence 99842 012333333
Q ss_pred HHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHH
Q 011084 406 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 485 (494)
Q Consensus 406 ~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~ 485 (494)
++. + +++|+++|||+||||.||+|||.||++||..|++++++|++|+|++++|. ++..+||.
T Consensus 236 ---~~~------~--~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~-------~~~~~pl~ 297 (319)
T 1zxx_A 236 ---KYG------D--FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENG-------KVTSHDIL 297 (319)
T ss_dssp ---HSS------C--CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETT-------EEEEEEHH
T ss_pred ---Hhh------C--ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------EEEEEEHH
Confidence 321 2 89999999999999999999999999999999999999999999999987 37889999
Q ss_pred hHhccccC
Q 011084 486 VRFSFFSI 493 (494)
Q Consensus 486 ~~~~~~~~ 493 (494)
++++.+|-
T Consensus 298 ~~~~~~k~ 305 (319)
T 1zxx_A 298 DLFDESHR 305 (319)
T ss_dssp HHTTCCCC
T ss_pred HHHhcCCC
Confidence 99987764
No 5
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=2.2e-83 Score=652.58 Aligned_cols=304 Identities=22% Similarity=0.352 Sum_probs=275.9
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC-CC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IR 164 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k-~~ 164 (494)
.+||||+|||||||||||||+++++++. +++++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ ++
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~ 78 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSAL--TEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGT-FLGSARFPEFR 78 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH--HTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSC-TTCCCCCGGGG
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCC-eeccCCCCCCC
Confidence 3799999999999999999999999975 35789999999999999999999999999999999998 99999987 56
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~ 244 (494)
+++++++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++|| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~a 150 (320)
T 1pfk_A 79 DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTD--YTIGFFTALSTVVEA 150 (320)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCc--CCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999984 5899999999999999998 999999999999999
Q ss_pred HHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 011084 245 ISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL 324 (494)
Q Consensus 245 I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv 324 (494)
|++++.+|.||+ ||||||+|||+||||||+||||++||+|||||+++ ++ +++++.|++|+++||+|++|+|
T Consensus 151 id~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~----~~----~~i~~~i~~~~~~gk~~~iIvv 221 (320)
T 1pfk_A 151 IDRLRDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEF----SR----EDLVNEIKAGIAKGKKHAIVAI 221 (320)
T ss_dssp HHHHHHHHHHHT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC----CH----HHHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEE
Confidence 999998888886 69999999999999999999999999999999974 44 4568888899989999999999
Q ss_pred eCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHH
Q 011084 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVE 404 (494)
Q Consensus 325 ~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~ 404 (494)
|||+.. .+.|++.++
T Consensus 222 aEG~~~-----------------------------------------------------------------~~~la~~i~ 236 (320)
T 1pfk_A 222 TEHMCD-----------------------------------------------------------------VDELAHFIE 236 (320)
T ss_dssp ESSSSC-----------------------------------------------------------------HHHHHHHHH
T ss_pred eCCcch-----------------------------------------------------------------HHHHHHHHH
Confidence 999842 112344444
Q ss_pred HHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccH
Q 011084 405 VEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPI 484 (494)
Q Consensus 405 ~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl 484 (494)
++ . + |++|+++|||+||||.||+|||.||++||..|++++++|++|+|++++|. ++..+||
T Consensus 237 ~~----~--~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~-------~~~~~pl 297 (320)
T 1pfk_A 237 KE----T--G------RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNE-------QLVHHDI 297 (320)
T ss_dssp HH----H--S------SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETT-------EEEEEEH
T ss_pred HH----h--C------CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------EEEEEEH
Confidence 33 2 1 89999999999999999999999999999999999999999999999987 3788999
Q ss_pred HhHh-ccccC
Q 011084 485 TVRF-SFFSI 493 (494)
Q Consensus 485 ~~~~-~~~~~ 493 (494)
.+++ +.+|-
T Consensus 298 ~~~~~~~~k~ 307 (320)
T 1pfk_A 298 IDAIENMKRP 307 (320)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHhhCCCC
Confidence 9998 76653
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=2.4e-80 Score=631.49 Aligned_cols=305 Identities=25% Similarity=0.350 Sum_probs=273.8
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC-CC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IR 164 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k-~~ 164 (494)
++|||||||||||||||+||+|+++.+. +++.+||||++||+||+++++++|+++.++.|+++||| +|||+|.+ ++
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a~--~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt-~lgtsR~~~~~ 77 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKAI--YHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGT-KLYTARCPEFK 77 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSC-TTCCCCCHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCC-ccccCCCCccc
Confidence 3799999999999999999999999875 46789999999999999999999999999999999999 99999974 56
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~ 244 (494)
++|++++++++|++++||+||+||||||+++|++|+|+ .++||||||||||||++|| +|||||||+++++++
T Consensus 78 ~~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td--~t~GfdTA~~~~~~a 149 (319)
T 4a3s_A 78 TVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTD--FTIGFDTALNTVIDA 149 (319)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCC--CCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999985 5899999999999999998 999999999999999
Q ss_pred HHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 011084 245 ISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL 324 (494)
Q Consensus 245 I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv 324 (494)
|++++.+|.|+++ |||||+|||+|||||+++|||++||+|||||+++ ++ +++++.|++++++|++|++|+|
T Consensus 150 i~~i~~~a~s~~r-v~ivEvMGR~aG~lA~~a~la~ga~~iliPE~~~----~~----~~~~~~i~~~~~~g~~~~iivv 220 (319)
T 4a3s_A 150 IDKIRDTATSHER-TYVIEVMGRHAGDIALWAGLAGGAESILIPEADY----DM----HEIIARLKRGHERGKKHSIIIV 220 (319)
T ss_dssp HHHHHHHHHHHTC-EEEEEECCTTCCHHHHHHHHHHTCSEEEBTTBCC----CH----HHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHhhhhccCC-eEEEEeCCcchhHHHHHHHhccCCCEEEecCCCC----CH----HHHHHHHHHHHHcCCCceEEEE
Confidence 9999988887764 8999999999999999999999999999999985 33 4557778888888999999999
Q ss_pred eCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHH
Q 011084 325 PEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVE 404 (494)
Q Consensus 325 ~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~ 404 (494)
|||+.... .+++.++
T Consensus 221 aEG~~~~~-----------------------------------------------------------------~~~~~~~ 235 (319)
T 4a3s_A 221 AEGVGSGV-----------------------------------------------------------------EFGKRIE 235 (319)
T ss_dssp ETTTCCHH-----------------------------------------------------------------HHHHHHH
T ss_pred ECCCCcch-----------------------------------------------------------------HHHHHHH
Confidence 99986420 1222222
Q ss_pred HHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccH
Q 011084 405 VEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPI 484 (494)
Q Consensus 405 ~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl 484 (494)
+ +. | +++|...|||.||||.||+||+.+|++||..|++++++|++|+|++++|.+ +.-+||
T Consensus 236 ~----~~--g------~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv~~~~~~-------~~~~pl 296 (319)
T 4a3s_A 236 E----ET--N------LETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNNK-------LVDHDI 296 (319)
T ss_dssp H----HH--C------CCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEEEEETTE-------EEEEEH
T ss_pred H----hC--C------ceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEEeH
Confidence 2 21 1 789999999999999999999999999999999999999999999999873 677899
Q ss_pred HhHhccccCC
Q 011084 485 TVRFSFFSIV 494 (494)
Q Consensus 485 ~~~~~~~~~~ 494 (494)
.++++.+|-|
T Consensus 297 ~~~~~~~k~v 306 (319)
T 4a3s_A 297 IEILETKHTV 306 (319)
T ss_dssp HHHSSSCCCC
T ss_pred HHHHhccCCC
Confidence 9999887753
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.2e-75 Score=649.40 Aligned_cols=324 Identities=20% Similarity=0.269 Sum_probs=289.1
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+++||||+|||||||||||||+++++++.. .+++||||++||+||+++++++|+|+.++.|+++||| +|||+|.++
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 474 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGS-KLGSKRTLP 474 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSC-SSCEECCCS
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCc-eeecCCCCc
Confidence 4578999999999999999999999998863 4789999999999999999999999999999999998 999999876
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHH
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 242 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~-~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~ 242 (494)
++++++++++|++++||+||+||||||+++|.+|++++++.+ .+++||||||||||||++|| +|||||||+++++
T Consensus 475 --~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 475 --KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSD--FSVGADTALNTIC 550 (762)
T ss_dssp --GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCc--CCCChHHHHHHHH
Confidence 578999999999999999999999999999999999988764 57999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEE
Q 011084 243 QLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVI 322 (494)
Q Consensus 243 ~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvV 322 (494)
++|++|+++|.|+++||||||+|||+||||||++|||++||+|||||++ .+++++.+.+.. +.+|.+++++|++|
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~gad~ilIPE~~----~~l~~~~~~i~~-~~~r~~~~~~~~iV 625 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEEP----FTIRDLQANVEH-LVQKMKTTVKRGLV 625 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTTCSEEECSSSC----CCHHHHHHHHHH-HHHHHTSSCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEECCCC----CCHHHHHHHHHH-HHHHHhcCCCceEE
Confidence 9999999999877788999999999999999999999999999999997 578888777555 66888889999999
Q ss_pred EEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHH
Q 011084 323 LLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHL 402 (494)
Q Consensus 323 lv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~l 402 (494)
||+||+...+ +.++++++
T Consensus 626 vvaEga~~~~--------------------------------------------------------------~~~~~~~~ 643 (762)
T 3o8l_A 626 LRNEKCNENY--------------------------------------------------------------TTDFIFNL 643 (762)
T ss_dssp EEETTSCSSS--------------------------------------------------------------CHHHHHHH
T ss_pred EEECCCCccc--------------------------------------------------------------hHHHHHHH
Confidence 9999986421 11223333
Q ss_pred HHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC---------------CCceEEEE
Q 011084 403 VEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAG---------------LNGYMATV 467 (494)
Q Consensus 403 v~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g---------------~tG~mv~i 467 (494)
++++ .+ .. |++|.++|||.||||.||+|||.+|++||..|++++.+| .+|+|+++
T Consensus 644 ~~~~----~~-----~~-~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g~~~~~~~~~~~~vg~ 713 (762)
T 3o8l_A 644 YSEE----GK-----GI-FDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGCVLGM 713 (762)
T ss_dssp HHHH----TT-----TT-CEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSSSBCCCSSTTEEEEEE
T ss_pred HHhh----cc-----CC-ceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCceEEEEE
Confidence 3322 11 12 999999999999999999999999999999999999997 79999999
Q ss_pred ecCC------------------CCCcceEEccccHHhHhccc
Q 011084 468 TNLK------------------NPANKWRCGAAPITVRFSFF 491 (494)
Q Consensus 468 ~~~~------------------~~~~~w~~~~vPl~~~~~~~ 491 (494)
++.+ .|..+||....||.++|..-
T Consensus 714 ~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~~~~~~l~~~ 755 (762)
T 3o8l_A 714 RKRALVFQPVTELQNQTDFEHRIPKEQWWLKLRPILKILAKY 755 (762)
T ss_dssp ETTEEEEEEHHHHGGGEETTTTEESSCGGGGTHHHHHHTTCC
T ss_pred ECCEEEEEEHHHHhhccchhhcCCCCchHHhHHHHHHHHhcC
Confidence 9873 58899999999999998653
No 8
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=1.2e-75 Score=649.52 Aligned_cols=322 Identities=19% Similarity=0.265 Sum_probs=285.7
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC--CeeecCHhHHhcccccCCcccccccC
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~--~~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
..+++||||+||||||||||+||+++++.+. +.+.+||||++||+||+++ ++++|+|+.++.|+++||+ +|||+|
T Consensus 12 ~~~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGT-iLGSsR 88 (762)
T 3o8l_A 12 LGVGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGT-VIGSAR 88 (762)
T ss_dssp TTSSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSC-SSCCCC
T ss_pred cccCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCc-cccCCC
Confidence 3457899999999999999999999999764 4588999999999999999 8999999999999999998 999999
Q ss_pred CC-CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH-----------------HHhcCCCCeEEEeeecccCC
Q 011084 161 DQ-IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 161 ~k-~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~-----------------~~~~~~~i~VIgVPkTIDND 222 (494)
.+ +.+++++++++++|++++||+||+||||||+++|+.|+++ +.+++.+++|||||||||||
T Consensus 89 ~~~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDND 168 (762)
T 3o8l_A 89 CKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDND 168 (762)
T ss_dssp CCGGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccC
Confidence 87 5678999999999999999999999999999999988653 34456789999999999999
Q ss_pred CCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHH
Q 011084 223 LKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLT 302 (494)
Q Consensus 223 l~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~ 302 (494)
+++|| +|||||||+++++++|++|+++|.||+| +||||||||+||||||++|||++||+|||||++++. +++
T Consensus 169 l~gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-v~iVEvMGR~aG~LAl~aglA~gad~ilIPE~p~~~-----~~~ 240 (762)
T 3o8l_A 169 FCGTD--MTIGTDSALHRITEIVDAITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDD-----NWE 240 (762)
T ss_dssp CSSCS--CCBTHHHHHHHHHHHHHHHHTTCCSSCC-EEEEEECCSSCCHHHHHHHHHHTCSBCCCTTSCCCS-----SCH
T ss_pred CCCCc--CCcCchhHHHHHHHHHHHHHHhhhcCcc-EEEEEeCCcchhHHHHHHHHhcCCCEEEecCCCCCc-----chH
Confidence 99998 9999999999999999999999988876 899999999999999999999999999999998653 235
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCC
Q 011084 303 KQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQP 382 (494)
Q Consensus 303 ~~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~ 382 (494)
+++++.|++|.++|++|+||+||||+.+
T Consensus 241 ~~~~~~i~~~~~~gk~~~iVvVaEGa~d---------------------------------------------------- 268 (762)
T 3o8l_A 241 DHLCRRLSETRTRGSRLNIIIVAEGAID---------------------------------------------------- 268 (762)
T ss_dssp HHHHHHHHHHHHTTCSCCBBCEETTCCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCccC----------------------------------------------------
Confidence 7889999999999999999999999964
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC--
Q 011084 383 ESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL-- 460 (494)
Q Consensus 383 D~~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~-- 460 (494)
.+|++.. .+.|+++|++ +. | +++|.++|||+||||.||+|||.||++||..|++++++|.
T Consensus 269 -~~G~~i~-----~~~l~~~i~~----~~------g--~~~R~tvLGh~QRgg~Psa~Dr~lat~lG~~AV~~~~~g~~~ 330 (762)
T 3o8l_A 269 -RNGKPIT-----SEGVKDLVVR----RL------G--YDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPD 330 (762)
T ss_dssp -SSSCCCC-----HHHHHHHHHH----HT------C--CCEEEECCCSSTTCSCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred -CCCCCcH-----HHHHHHHHHH----Hh------C--CCcceeecCccccCCCCChHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344432 2344544444 32 2 8999999999999999999999999999999999999999
Q ss_pred -CceEEEEecCCCCCcceEEccccHHhHhcccc
Q 011084 461 -NGYMATVTNLKNPANKWRCGAAPITVRFSFFS 492 (494)
Q Consensus 461 -tG~mv~i~~~~~~~~~w~~~~vPl~~~~~~~~ 492 (494)
+|+|+++++.+ +.-+||.++.+..|
T Consensus 331 ~~~~~v~~~~~~-------i~~~Pl~e~~~~~k 356 (762)
T 3o8l_A 331 TPACVVSLSGNQ-------AVRLPLMECVQVTK 356 (762)
T ss_dssp SCCEEEEEETTE-------EEEEEHHHHHHHHH
T ss_pred CceEEEEEECCE-------EEEEEHHHHHhccC
Confidence 89999999874 77899998877654
No 9
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-74 Score=638.83 Aligned_cols=318 Identities=18% Similarity=0.245 Sum_probs=280.9
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCC---eeecCHhHHhcccccCCcccccccCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---TLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~---~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
++||||+||||||||||+||+++++++.. .+.+||||++||+||++++ +.+|+|++|+.|+++||| +|||+|.+
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~--~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 79 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF--KGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGT-NIGTARCM 79 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 57999999999999999999999998853 4789999999999999996 789999999999999999 99999987
Q ss_pred C-CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHH-----------------HhcCCCCeEEEeeecccCCCC
Q 011084 163 I-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-----------------AEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 163 ~-~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~-----------------~~~~~~i~VIgVPkTIDNDl~ 224 (494)
. .+++.+.+++++|++++||+||+||||||+++|.+|++++ .+++.+++|||||||||||++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~ 159 (766)
T 3o8o_B 80 EFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMS 159 (766)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCC
Confidence 4 5678899999999999999999999999999999987643 234567999999999999999
Q ss_pred CCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHH
Q 011084 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQ 304 (494)
Q Consensus 225 ~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~ 304 (494)
+|| +|||||||+++++++|++|+++|.||+| +||||||||+||||||++|||++||+|||||+++ +++++.++
T Consensus 160 gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-vfvVEvMGR~aG~LAl~aglA~gAd~ilIPE~p~----~~~~~~~~ 232 (766)
T 3o8o_B 160 TTD--ATIGAYSALDRICKAIDYVEATANSHSR-AFVVEVMGRNCGWLALLAGIATSADYIFIPEKPA----TSSEWQDQ 232 (766)
T ss_dssp TCS--CCBTHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHHTCSEEECTTCCC----CTTHHHHH
T ss_pred CCC--CCCChhHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhcCCCEEEccCCCC----ChHHHHHH
Confidence 998 9999999999999999999999998875 8999999999999999999999999999999984 56677888
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCC
Q 011084 305 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 384 (494)
Q Consensus 305 i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~ 384 (494)
|++.+++|...||+|+|||||||+.+..
T Consensus 233 v~~~i~~~~~~gk~~~IVvVaEGa~~~~---------------------------------------------------- 260 (766)
T 3o8o_B 233 MCDIVSKHRSRGKRTTIVVVAEGAIAAD---------------------------------------------------- 260 (766)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBCTT----------------------------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCccccc----------------------------------------------------
Confidence 9999999999999999999999997531
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---
Q 011084 385 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN--- 461 (494)
Q Consensus 385 ~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t--- 461 (494)
|+.. +.+.|+ +.++++. | +++|..+|||.||||.||+|||.+|++||..|++++++|.+
T Consensus 261 -~~~~-----~~~~l~----~~i~~~~------g--~~~R~tvLGh~QRGG~Psa~DR~lAt~~G~~AV~~~~~g~~~~~ 322 (766)
T 3o8o_B 261 -LTPI-----SPSDVH----KVLVDRL------G--LDTRITTLGHVQRGGTAVAYDRILATLQGLEAVNAVLESTPDTP 322 (766)
T ss_dssp -SCBC-----CHHHHH----HHHHHTT------C--CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred -CCcc-----hHHHHH----HHHHHHh------C--CceeEcccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1110 122344 4444432 2 89999999999999999999999999999999999999997
Q ss_pred ceEEEEecCCCCCcceEEccccHHhHhcc
Q 011084 462 GYMATVTNLKNPANKWRCGAAPITVRFSF 490 (494)
Q Consensus 462 G~mv~i~~~~~~~~~w~~~~vPl~~~~~~ 490 (494)
|+|+++++.+ ..-+||.+....
T Consensus 323 ~~mv~~~~~~-------i~~~pl~~~~~~ 344 (766)
T 3o8o_B 323 SPLIAVNENK-------IVRKPLMESVKL 344 (766)
T ss_dssp CEEEEESSSC-------EEEEEHHHHHHH
T ss_pred ceEEEEECCE-------EEEEEHHHHHhc
Confidence 8999999886 567899887654
No 10
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-74 Score=636.46 Aligned_cols=318 Identities=16% Similarity=0.237 Sum_probs=279.1
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC--CeeecCHhHHhcccccCCcccccccCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~--~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
+++||||+||||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|+|++|+.|+++||| +|||+|.+
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 80 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGI--HFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGT-LIGTARSM 80 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 46899999999999999999999999885 4578999999999999998 6999999999999999999 99999987
Q ss_pred C-CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHH-----------------HhcCCCCeEEEeeecccCCCC
Q 011084 163 I-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-----------------AEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 163 ~-~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~-----------------~~~~~~i~VIgVPkTIDNDl~ 224 (494)
. .+++++.+++++|++++||+||+||||||+++|..|++++ .+++.+++||||||||||||+
T Consensus 81 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 81 EFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp GGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 4 5778999999999999999999999999999999887532 234567999999999999999
Q ss_pred CCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHH
Q 011084 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQ 304 (494)
Q Consensus 225 ~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~ 304 (494)
+|| +|||||||+++++++|++|.++|.||+| |||||||||+||||||++|||++||+|||||+++ +++++.++
T Consensus 161 gTD--~TiGfdTAl~~i~eaid~i~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~gAd~ilIPE~p~----~~~~~~~~ 233 (787)
T 3o8o_A 161 GTD--STIGAYSALERICEMVDYIDATAKSHSR-AFVVEVMGRHCGWLALMAGIATGADYIFIPERAV----PHGKWQDE 233 (787)
T ss_dssp TSS--CCEEHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHTTCSEEECGGGCB----CTTTHHHH
T ss_pred CCC--CCCCcHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhhCCCEEEeCCCCC----ChHHHHHH
Confidence 998 9999999999999999999999998765 8999999999999999999999999999999985 56667788
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCC
Q 011084 305 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 384 (494)
Q Consensus 305 i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~ 384 (494)
|++.+++|...||+|+||||+||+.+..
T Consensus 234 v~~~i~~~~~~gk~~~IVvVaEGa~~~~---------------------------------------------------- 261 (787)
T 3o8o_A 234 LKEVCQRHRSKGRRNNTIIVAEGALDDQ---------------------------------------------------- 261 (787)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBBTT----------------------------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCcccc----------------------------------------------------
Confidence 8999999988999999999999997531
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---
Q 011084 385 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN--- 461 (494)
Q Consensus 385 ~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t--- 461 (494)
|+.. +.+.+++ .+++ . | +++|..+|||.||||.||+|||.+|++||..|++++++|.+
T Consensus 262 -~~~~-----~~~~~~~----~i~~-~--g------~~~R~tvLGh~QRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~~ 322 (787)
T 3o8o_A 262 -LNPV-----TANDVKD----ALIE-L--G------LDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPETP 322 (787)
T ss_dssp -SCBC-----CHHHHHH----HHHH-H--T------CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred -Ccch-----hHHHHHH----HHHH-h--C------CcceeeccCHhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1110 1122333 3333 1 2 89999999999999999999999999999999999999997
Q ss_pred ceEEEEecCCCCCcceEEccccHHhHhcc
Q 011084 462 GYMATVTNLKNPANKWRCGAAPITVRFSF 490 (494)
Q Consensus 462 G~mv~i~~~~~~~~~w~~~~vPl~~~~~~ 490 (494)
|+|+++++.+ +.-+||.+....
T Consensus 323 ~~mVg~~~~~-------i~~~pl~~~~~~ 344 (787)
T 3o8o_A 323 SPLIGILENK-------IIRMPLVESVKL 344 (787)
T ss_dssp CEEEEESSSS-------EEEEEHHHHHHH
T ss_pred CeEEEEECCE-------EEEEEHHHHHhc
Confidence 7999999886 567899887654
No 11
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-73 Score=633.67 Aligned_cols=323 Identities=16% Similarity=0.177 Sum_probs=280.2
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhh-cCCeeecCHhHHhcccccCCcccccccCC
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~-~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
+.+++||||++||||||||||||+++++++.. .+++||||++||+||+ ++++++|+++.|+.|+++||| +|||+|.
T Consensus 390 ~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt-~LGTsR~ 466 (787)
T 3o8o_A 390 VSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGS-EIGTNRS 466 (787)
T ss_dssp SSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-TTCCBCC
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCc-eeccCCC
Confidence 34578999999999999999999999998753 5789999999999999 899999999999999999998 9999998
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~-~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
++. +++++++++|++++||+||+||||||+++|+.|++++.+.+ ++++||||||||||||++|| +|||||||+++
T Consensus 467 ~~~--~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD--~t~GfdTA~~~ 542 (787)
T 3o8o_A 467 VAS--EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTE--YSLGVDTCLNA 542 (787)
T ss_dssp CGG--GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCS--CCBTHHHHHHH
T ss_pred Cch--hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCc--CCCCchHHHHH
Confidence 763 46889999999999999999999999999999999865443 46999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHH----cC
Q 011084 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE----QD 316 (494)
Q Consensus 241 ~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~----~g 316 (494)
++++|++|+++|.|+++||||||+|||+||||||+||||++||+|||||++ .+++++.+.|.... +++. ++
T Consensus 543 ~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~iliPE~~----~~~~~~~~~i~~~~-~~~~~~~g~~ 617 (787)
T 3o8o_A 543 LVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEKK----IDLASIREDITLLK-ENFRHDKGEN 617 (787)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTTCSEEECSSSC----CCHHHHHHHHHHHH-HHHHHCCSCS
T ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcCCCEEEeCCCC----CCHHHHHHHHHHHH-HHHHHhhcCC
Confidence 999999999998887778999999999999999999999999999999997 46777766654433 3332 34
Q ss_pred CCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhH
Q 011084 317 KNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETE 396 (494)
Q Consensus 317 k~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te 396 (494)
+++.+|+++||..... +.
T Consensus 618 ~~~~iivvaEg~~~~~--------------------------------------------------------------~~ 635 (787)
T 3o8o_A 618 RNGKLLVRNEQASSVY--------------------------------------------------------------ST 635 (787)
T ss_dssp SCCEEEEEETTSCSSS--------------------------------------------------------------CH
T ss_pred CCceEEEEeCCccCCC--------------------------------------------------------------CH
Confidence 5569999999985321 12
Q ss_pred HHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 011084 397 KLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL---------------- 460 (494)
Q Consensus 397 ~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~---------------- 460 (494)
+.|++++++++. . + |++|+.+|||.||||.||+|||.+|++||..|++++.+|.
T Consensus 636 ~~la~~i~~~~~----~----~--~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~~~~~~~~~~~~~~~~~~ 705 (787)
T 3o8o_A 636 QLLADIISEASK----G----K--FGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRF 705 (787)
T ss_dssp HHHHHHHHHHHT----T----S--SEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHhC----C----C--ceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccccc
Confidence 345655555432 1 1 8999999999999999999999999999999999999876
Q ss_pred -----------------CceEEEEecCC-------------------CCCcceEEccccHHhHhc
Q 011084 461 -----------------NGYMATVTNLK-------------------NPANKWRCGAAPITVRFS 489 (494)
Q Consensus 461 -----------------tG~mv~i~~~~-------------------~~~~~w~~~~vPl~~~~~ 489 (494)
+++|+++++.. .|..+||....||.++|.
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~~w~~~~~~~~~l~ 770 (787)
T 3o8o_A 706 KFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEVHWAEYNKIGDILS 770 (787)
T ss_dssp --------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCCCCHHHHHHHHHHT
T ss_pred ccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcChHHHhHHHHHHHhc
Confidence 68899998762 588999999999999884
No 12
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.7e-73 Score=638.78 Aligned_cols=320 Identities=18% Similarity=0.242 Sum_probs=279.5
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCC---eeecCHhHHhcccccCCcccccccC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---TLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~---~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
..++||||+|||||||||||||+++++++. +.+.+||||++||+||++++ +.+|+|++|+.|+++||| +|||+|
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~--~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGT-iLGSsR 255 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGI--YKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGT-NIGTAR 255 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHH--HTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSC-SSCCCC
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCc-eeccCC
Confidence 347899999999999999999999999875 45789999999999999986 789999999999999999 999999
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH-----------------HHhcCCCCeEEEeeecccCC
Q 011084 161 DQI-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 161 ~k~-~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~-----------------~~~~~~~i~VIgVPkTIDND 222 (494)
.+. .+++.+.+++++|++++||+||+||||||+++|..|+++ ..+++.+++|||||||||||
T Consensus 256 ~~~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDND 335 (941)
T 3opy_B 256 CKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDND 335 (941)
T ss_dssp CSGGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCC
Confidence 874 567889999999999999999999999999999988653 34456689999999999999
Q ss_pred CCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHH
Q 011084 223 LKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLT 302 (494)
Q Consensus 223 l~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~ 302 (494)
|++|| +|||||||+++++++|++|+.+|.||+ +|||||||||+||||||++|||++||+|||||+++ ++.++.
T Consensus 336 l~gTD--~TiGfdTAv~~i~eaId~I~~tA~Sh~-RvfvVEVMGR~aG~LAl~agLA~GAd~IlIPE~p~----~~~~~~ 408 (941)
T 3opy_B 336 MSSTD--ATIGAFSSLDRICRAIDYIDATANSHS-RAFIVEVMGRHCGWLGLLAGLATSADYILIPEKPA----SSREWQ 408 (941)
T ss_dssp CSSCS--SCEEHHHHHHHHHHHHHHHHSCC-CCS-EEEEEECCCSSCCHHHHHHHHHTTCSEEECTTSCC----CSSCHH
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCcccHHHHHHHHhcCCCEEEECCCCC----ChHHHH
Confidence 99998 999999999999999999999998876 48999999999999999999999999999999985 555667
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCC
Q 011084 303 KQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQP 382 (494)
Q Consensus 303 ~~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~ 382 (494)
++|++.+++|..+||+|+||||+||+.+..
T Consensus 409 ~~v~~~i~~~~~~gk~~~IVVVAEGa~~~~-------------------------------------------------- 438 (941)
T 3opy_B 409 DQMCDIVGKHRARGKRKTIVIVAEGAISND-------------------------------------------------- 438 (941)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEECTTCBCTT--------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCccccc--------------------------------------------------
Confidence 888999999988999999999999997531
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC-
Q 011084 383 ESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN- 461 (494)
Q Consensus 383 D~~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t- 461 (494)
|+.. +.+.+ ++.++++. | +++|..+|||.||||.||+|||.+|++||..|++++++|.+
T Consensus 439 ---~~~i-----~~~~l----~~~i~~~~------g--~d~R~tvLGhiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~ 498 (941)
T 3opy_B 439 ---LSPI-----SCDQV----KDVLVNRL------G--LDTRVTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDAD 498 (941)
T ss_dssp ---CCBC-----CHHHH----HHHHHHTS------C--CEEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ---CCcc-----hHHHH----HHHHHHHh------C--CceeecccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCC
Confidence 1111 12223 34444432 2 89999999999999999999999999999999999999997
Q ss_pred --ceEEEEecCCCCCcceEEccccHHhHhcc
Q 011084 462 --GYMATVTNLKNPANKWRCGAAPITVRFSF 490 (494)
Q Consensus 462 --G~mv~i~~~~~~~~~w~~~~vPl~~~~~~ 490 (494)
|+|+++++.+ +.-+||.+....
T Consensus 499 ~~g~mVg~~~~~-------iv~~Pl~e~v~~ 522 (941)
T 3opy_B 499 TPSPMIAIKEDQ-------ITRVPLVDAVEL 522 (941)
T ss_dssp SCCEEEEESSSC-------EEEEEHHHHHHH
T ss_pred CCceEEEEECCE-------EEEEEHHHHHhc
Confidence 7999999886 677899887654
No 13
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.2e-73 Score=633.92 Aligned_cols=319 Identities=17% Similarity=0.211 Sum_probs=278.9
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC--CeeecCHhHHhcccccCCcccccccCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~--~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
.++||||+|||||||||||||+++++++. +.+.+||||++||+||+++ ++.+|+|++|+.|+++||+ +|||+|.+
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~--~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGT-iLGTsR~~ 285 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGI--FYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGT-IIGTARCK 285 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHH--HTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSC-SSCCCCSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-cccCCCCC
Confidence 46899999999999999999999999875 3578999999999999998 5899999999999999998 99999987
Q ss_pred C-CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHH-------H----------hcCCCCeEEEeeecccCCCC
Q 011084 163 I-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-------A----------EAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 163 ~-~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~-------~----------~~~~~i~VIgVPkTIDNDl~ 224 (494)
. .+++++++++++|++++||+||+||||||+++|.+|++++ . +.+.+++||||||||||||+
T Consensus 286 ~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~ 365 (989)
T 3opy_A 286 EFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMC 365 (989)
T ss_dssp STTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCT
T ss_pred cccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCC
Confidence 4 5788999999999999999999999999999999998643 1 23467999999999999999
Q ss_pred CCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHH
Q 011084 225 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQ 304 (494)
Q Consensus 225 ~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~ 304 (494)
+|| +|||||||+++++++|++|..+|.||+ ++||||||||+||||||++|||++||+|||||+++ ++.++.++
T Consensus 366 gTD--~TiGFdTAl~~i~eaId~I~~TA~Sh~-RvfVVEVMGR~aG~LAl~agLA~GAd~IlIPE~pf----~l~~~~~~ 438 (989)
T 3opy_A 366 GTD--STIGAYSSLERIIELVDYIDATAASHS-RAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPP----SESNWKDD 438 (989)
T ss_dssp TCS--CCEEHHHHHHHHHHHHHHHHSSCCCTT-EEEEEECCCSSCTHHHHHHHHHHTCSEEECTTSCC----CTTTHHHH
T ss_pred CCC--CCCChhhHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCchhHHHHHHHHhcCCCEEEeCCCCC----ChHHHHHH
Confidence 998 999999999999999999999998765 58999999999999999999999999999999985 56667788
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCC
Q 011084 305 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 384 (494)
Q Consensus 305 i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~ 384 (494)
|++.+++|.++||+|+||||+||+.+..
T Consensus 439 l~~~i~k~~~~Gk~~~IVVVAEGa~~~~---------------------------------------------------- 466 (989)
T 3opy_A 439 LKKVCLRHREKGRRKTTVIVAEGAIDDQ---------------------------------------------------- 466 (989)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTCBCTT----------------------------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCccccc----------------------------------------------------
Confidence 8999988888999999999999997531
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---
Q 011084 385 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN--- 461 (494)
Q Consensus 385 ~G~~~~~~i~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t--- 461 (494)
|+. + +.+. +++.+++ .| +++|..+|||.||||.||+|||.||++||..|++++++|.+
T Consensus 467 -~~~----i-~~~~----l~~~l~~---~G------~dtR~tvLGHiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~~ 527 (989)
T 3opy_A 467 -LNP----I-TSEE----VKDVLVE---IG------LDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPAIP 527 (989)
T ss_dssp -SCB----C-CHHH----HHHHHHT---TT------CEEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred -ccc----c-hHHH----HHHHHHH---hC------cchhhhhhhHHHcCCCCChhhHHHHHHHHHHHHHHHHcCCCCCC
Confidence 110 0 1112 2333432 12 89999999999999999999999999999999999999985
Q ss_pred ceEEEEecCCCCCcceEEccccHHhHhccc
Q 011084 462 GYMATVTNLKNPANKWRCGAAPITVRFSFF 491 (494)
Q Consensus 462 G~mv~i~~~~~~~~~w~~~~vPl~~~~~~~ 491 (494)
|+|+++++.+ +.-+||.+.....
T Consensus 528 g~mVgl~~~~-------iv~vPl~e~v~~~ 550 (989)
T 3opy_A 528 SPVISILENK-------IVRQPLVESVAQT 550 (989)
T ss_dssp CEEEEESSSS-------EEEEEHHHHHHHH
T ss_pred CeEEEEECCE-------EEEEEHHHHHhcc
Confidence 8999999886 6778998876543
No 14
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=9.4e-73 Score=632.86 Aligned_cols=324 Identities=15% Similarity=0.199 Sum_probs=279.2
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhh-cCCeeecCHhHHhcccccCCcccccccCC
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~-~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
+.+++||||++||||||||||||+++++++.. .+++||||++||+||+ ++++++|++++|+.|+++||+ +|||+|.
T Consensus 568 ~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~ 644 (941)
T 3opy_B 568 LEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGS-EIGTNRT 644 (941)
T ss_dssp GGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-SSCEECC
T ss_pred cccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCc-EeccCCC
Confidence 34578999999999999999999999998753 4789999999999999 799999999999999999998 9999998
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-CCCCeEEEeeecccCCCCCCCCCCCcCchhHHHH
Q 011084 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~ 240 (494)
++. ++++++++++|++++||+||+||||||+++|..|+++.++. .++++||||||||||||++|| +|||||||+++
T Consensus 645 ~~~-~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD--~TiGfdTA~~~ 721 (941)
T 3opy_B 645 LPN-DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTE--YSLGSDTCLNS 721 (941)
T ss_dssp CTT-TSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHH
T ss_pred Ccc-cchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCC--CCCChHHHHHH
Confidence 664 34678999999999999999999999999999999876543 246999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHH----cC
Q 011084 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE----QD 316 (494)
Q Consensus 241 ~~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~----~g 316 (494)
++++|++|+.+|.|+++||||||+|||+||||||++|||++||+|||||++ .+++++.+.|... ++++. ++
T Consensus 722 i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~GAd~ilIPE~~----~~l~~l~~~i~~l-~~~~~~~~g~~ 796 (941)
T 3opy_B 722 FMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEG----ISLAQLEMDINSL-KESFANDQGKT 796 (941)
T ss_dssp HHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHTCSEEECTTTC----CCHHHHHHHHHHH-HHHHHTCTTSC
T ss_pred HHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEeCCCC----CCHHHHHHHHHHH-HHHHhhhhcCC
Confidence 999999999988887788999999999999999999999999999999997 4677776654433 34443 35
Q ss_pred CCeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhH
Q 011084 317 KNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETE 396 (494)
Q Consensus 317 k~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te 396 (494)
+++.+|+++||+.... +.
T Consensus 797 ~~~~iIvvaEga~~~~--------------------------------------------------------------~~ 814 (941)
T 3opy_B 797 KSGRLILKSENASKVL--------------------------------------------------------------TT 814 (941)
T ss_dssp CCCEEEEEEGGGCSSS--------------------------------------------------------------CH
T ss_pred CCceEEEEeCCccCCC--------------------------------------------------------------CH
Confidence 6779999999975421 12
Q ss_pred HHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 011084 397 KLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL---------------- 460 (494)
Q Consensus 397 ~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~---------------- 460 (494)
+.|+++|+++++ .| |++|+.+|||.||||.||+|||.+|++||..|++++.+|.
T Consensus 815 ~~la~~i~~~~~----~g------~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~ 884 (941)
T 3opy_B 815 EVISTIIDDEAS----GR------FDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTD 884 (941)
T ss_dssp HHHHHHHHHHHT----TS------SEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCH
T ss_pred HHHHHHHHHHhC----CC------ceeEEccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 345655555432 12 8999999999999999999999999999999999999998
Q ss_pred ----CceEEEEecCC-------------------CCCcceEEccccHHhHhc
Q 011084 461 ----NGYMATVTNLK-------------------NPANKWRCGAAPITVRFS 489 (494)
Q Consensus 461 ----tG~mv~i~~~~-------------------~~~~~w~~~~vPl~~~~~ 489 (494)
+++|+++++.+ .|..+||....||.++|.
T Consensus 885 ~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~~~~~l~ 936 (941)
T 3opy_B 885 EITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVREISDMLS 936 (941)
T ss_dssp HHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHHHHHHHH
T ss_pred cCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHHHHHHhc
Confidence 89999998773 688899999999998874
No 15
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-72 Score=625.75 Aligned_cols=323 Identities=17% Similarity=0.198 Sum_probs=279.4
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhc-CCeeecCHhHHhcccccCCcccccccCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA-QKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~-~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
.+++||||++||||||||||||+++++++.. .+++||||++||+||++ +++.+|++++|+.|+++||| +|||+|.+
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~ 467 (766)
T 3o8o_B 391 DKRLKIAIVNVGAPAGGINSAVYSMATYCMS--QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGS-EIGTNRVT 467 (766)
T ss_dssp SCCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSC-TTCCCCCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCc-eEccCCCC
Confidence 3468999999999999999999999998753 47899999999999997 78999999999999999998 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcCchhHHHHH
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~-~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~ 241 (494)
+. ++++++++++|++++||+||+||||||+++|..|+++.++.. .+++||||||||||||++|| +|||||||++++
T Consensus 468 ~~-~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~T~GfdTA~~~~ 544 (766)
T 3o8o_B 468 PE-EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTE--YSLGSDTALNAL 544 (766)
T ss_dssp GG-GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCS--CCBTHHHHHHHH
T ss_pred Cc-cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCC--CCCChhHHHHHH
Confidence 63 456889999999999999999999999999999998654332 46999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHH----cCC
Q 011084 242 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE----QDK 317 (494)
Q Consensus 242 ~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~----~gk 317 (494)
+++|++|+.+|.|++++|||||+|||+||||||++|||++||+|||||++ .+++++.+.|.... +++. +++
T Consensus 545 ~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~ilIPE~~----~~~~~~~~~i~~~~-~~~~~~~~~~~ 619 (766)
T 3o8o_B 545 MEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEG----ISLEQLSEDIEYLA-QSFEKAEGRGR 619 (766)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHTCSEEECTTTC----CCHHHHHHHHHHHH-HHHHHHTTCTT
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhCCCEEEeCCCC----CCHHHHHHHHHHHH-HHHhhhhccCC
Confidence 99999999998887778999999999999999999999999999999998 46666665543332 3332 457
Q ss_pred CeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHH
Q 011084 318 NHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 397 (494)
Q Consensus 318 ~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~ 397 (494)
++.+|+++||..... +.+
T Consensus 620 ~~~iivvaEg~~~~~--------------------------------------------------------------~~~ 637 (766)
T 3o8o_B 620 FGKLILKSTNASKAL--------------------------------------------------------------SAT 637 (766)
T ss_dssp CCEEEEEEGGGCSSC--------------------------------------------------------------CHH
T ss_pred CceEEEEeCCcCCCC--------------------------------------------------------------cHH
Confidence 889999999875321 123
Q ss_pred HHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------
Q 011084 398 LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL----------------- 460 (494)
Q Consensus 398 ~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~----------------- 460 (494)
.|++++++++. . + |++|..+|||.||||.||+|||.+|++||..|++++.+|.
T Consensus 638 ~la~~i~~~~~----~----~--~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~ 707 (766)
T 3o8o_B 638 KLAEVITAEAD----G----R--FDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADD 707 (766)
T ss_dssp HHHHHHHHHHT----T----S--CEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCCC
T ss_pred HHHHHHHHHhC----C----C--ceEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccc
Confidence 45555554321 1 2 8999999999999999999999999999999999999999
Q ss_pred -----CceEEEEecCC-------------------CCCcceEEccccHHhHhc
Q 011084 461 -----NGYMATVTNLK-------------------NPANKWRCGAAPITVRFS 489 (494)
Q Consensus 461 -----tG~mv~i~~~~-------------------~~~~~w~~~~vPl~~~~~ 489 (494)
+++|+++++.+ .|..+||....||.++|.
T Consensus 708 ~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~~~~~~l~ 760 (766)
T 3o8o_B 708 KTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATRLIADHLV 760 (766)
T ss_dssp HHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHHHHHHHHH
T ss_pred ccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHHHHHHHhc
Confidence 89999998773 688899999999998874
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.3e-71 Score=622.07 Aligned_cols=322 Identities=16% Similarity=0.182 Sum_probs=272.0
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhh-cCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~-~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
.+++||||++||||||||||||+++++++. +.+++||||++||+||+ ++++++|+++.++.|+++||+ +|||+|.+
T Consensus 596 ~~~~rIgIltsGGdaPGmNAaIravV~~a~--~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 672 (989)
T 3opy_A 596 SSRLNIAIIHVGAPTSALNPATRVATLNSL--AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGS-EIGTNRSL 672 (989)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSC-SSCCBCCC
T ss_pred cCCceEEEEecCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCc-EeccCCCC
Confidence 457899999999999999999999999875 35789999999999999 999999999999999999998 99999986
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcCchhHHHHH
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 241 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~-~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~ 241 (494)
. .+++++++++|++++||+||+||||||+++|..|++++.+.+ ++|+||||||||||||++|| +|||||||++++
T Consensus 673 ~--~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD--~TiGFdTAvn~~ 748 (989)
T 3opy_A 673 P--SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTE--YSLGSDTCLNTL 748 (989)
T ss_dssp G--GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHHH
T ss_pred c--hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCc--CCCChHHHHHHH
Confidence 4 357899999999999999999999999999999998765432 46999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHH--cC--C
Q 011084 242 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE--QD--K 317 (494)
Q Consensus 242 ~~~I~nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~--~g--k 317 (494)
+++|++|+.+|.|++++|||||+|||+||||||++|||++|++|||||++ .+++++.+.|. .+.+|+. +| +
T Consensus 749 ~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~GAd~ilIPE~~----f~l~~l~~~i~-~l~~~~~~~~g~~~ 823 (989)
T 3opy_A 749 SGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPENP----INLQTVQEDIE-LLTRTYEEDDGKNR 823 (989)
T ss_dssp HHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHTCSCEECTTSC----CCHHHHHHHHH-HHHHHHTTCC---C
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcCCCEEEeCCCC----CCHHHHHHHHH-HHHHHHHHhccCCc
Confidence 99999999999887778999999999999999999999999999999997 46777666543 3334443 33 5
Q ss_pred CeEEEEEeCCCCCcchhHHHHHHHHHHHhhcCCCCCcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHH
Q 011084 318 NHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 397 (494)
Q Consensus 318 ~~gvVlv~EGl~~~~~~~~~li~e~~~~~~~~~~~~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~ 397 (494)
++++|||+||..... +.+
T Consensus 824 ~~~IIvvaEga~~~~--------------------------------------------------------------~~~ 841 (989)
T 3opy_A 824 SGKIFIHNEKASKVY--------------------------------------------------------------TTD 841 (989)
T ss_dssp CCEEEEEESSSCSSS--------------------------------------------------------------CHH
T ss_pred cceEEEEeCCCcCCC--------------------------------------------------------------CHH
Confidence 678999999986421 112
Q ss_pred HHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------
Q 011084 398 LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL----------------- 460 (494)
Q Consensus 398 ~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~----------------- 460 (494)
.|++ +++++.+. . |++|+.+|||.||||.||+|||.+|++||..|++++.++.
T Consensus 842 ~la~----~i~e~~~~-----~-~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~~~~~~~~~~~~~~~~~~~ 911 (989)
T 3opy_A 842 LIAA----IIGEAGKG-----R-FESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDANFQVKHNANLSADERHLR 911 (989)
T ss_dssp HHHH----HHHHTTTT-----T-SCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCGGGSCCSBSCCCHHHHHHT
T ss_pred HHHH----HHHHhcCC-----C-ceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Confidence 3443 44443221 2 8999999999999999999999999999999999999876
Q ss_pred ----------------------CceEEEEecC-------------------CCCCcceEEccccHHhHhc
Q 011084 461 ----------------------NGYMATVTNL-------------------KNPANKWRCGAAPITVRFS 489 (494)
Q Consensus 461 ----------------------tG~mv~i~~~-------------------~~~~~~w~~~~vPl~~~~~ 489 (494)
+.+++++++. ..|..+||....||.++|.
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~r~p~~~~W~~~~~~~~~l~ 981 (989)
T 3opy_A 912 FFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKWRKGKNVHWEQLNIVSDLLS 981 (989)
T ss_dssp EEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC----CCCCHHHHHHHHHHS
T ss_pred ccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhhCCCcChHHHhHHHHHHHhc
Confidence 2346677644 2688999999999999874
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=93.32 E-value=0.14 Score=50.43 Aligned_cols=90 Identities=20% Similarity=0.069 Sum_probs=51.9
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
.+||+|+.-.+ .|.....+..+.+.+++ .+.+++.......++- ..|... + .
T Consensus 5 mkki~ii~np~-~~~~~~~~~~i~~~l~~--~g~~v~~~~~~~~~~~-----------------~~~~~~-------~-~ 56 (292)
T 2an1_A 5 FKCIGIVGHPR-HPTALTTHEMLYRWLCD--QGYEVIVEQQIAHELQ-----------------LKNVPT-------G-T 56 (292)
T ss_dssp CCEEEEECC--------CHHHHHHHHHHH--TTCEEEEEHHHHHHTT-----------------CSSCCE-------E-C
T ss_pred CcEEEEEEcCC-CHHHHHHHHHHHHHHHH--CCCEEEEecchhhhcc-----------------cccccc-------c-c
Confidence 46899998866 47778888888888864 3566765544333210 011100 0 1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+ . ...+.|.+|++|||||+..|+.... +.+++++|||
T Consensus 57 ~~---~-----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 57 LA---E-----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp HH---H-----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred hh---h-----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 11 1 2236899999999999888764421 2257999998
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=89.91 E-value=0.25 Score=48.28 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcC-------CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 168 QVNAALTACKNLN-------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 168 ~~~~~~~~l~~~~-------Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
-.+++.+.|++.+ .|.+|++|||||+-.|+... .....+++++|||.
T Consensus 16 ~~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~---~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 16 LRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY---EERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT---GGGTTTCEEEEEES
T ss_pred HHHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH---hhcCCCCCEEEEeC
Confidence 3455666676665 49999999999998876543 11212589999983
No 19
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=88.61 E-value=13 Score=35.32 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=67.3
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
+.+|||++..-..|-...++.|+-+++++. +.++.- . .+. .+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~--------------------------------~-~~~---~~ 43 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFV--------------------------------Q-SAN---GN 43 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEE--------------------------------E-ECT---TC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE--------------------------------E-CCC---CC
Confidence 468999999888899999999999888653 222221 0 111 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+...+.++.+...++|++|+.+.+.+... . ..+.+.+. +++||.+ |+++....++.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~-~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~ 106 (313)
T 3m9w_A 44 EETQMSQIENMINRGVDVLVIIPYNGQVLS-N-VVKEAKQE--GIKVLAY----DRMINDADIDFYISFDN 106 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSTTSCH-H-HHHHHHTT--TCEEEEE----SSCCTTSCCSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhhH-H-HHHHHHHC--CCeEEEE----CCcCCCCCceEEEecCH
Confidence 455567788888999999999998765311 1 12223333 4788865 56665555445788774
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=84.88 E-value=26 Score=32.96 Aligned_cols=132 Identities=10% Similarity=-0.008 Sum_probs=75.8
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+.++||++......|=...++.|+-+++++. +.++.-+ ..+. .
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~--------------------------------~~~~---~ 45 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYR--------------------------------GAAQ---Y 45 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEE--------------------------------ECSS---S
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEe--------------------------------CCCc---C
Confidence 4578999999988888889999999888654 2222210 1111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 244 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~ 244 (494)
+.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |++.+....-.++++|-. .....+
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~ 116 (305)
T 3g1w_A 46 DIQEQITVLEQAIAKNPAGIAISAIDPVELT-DTI-NKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNA 116 (305)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH-HHH-HHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHH
Confidence 3455667788888999999999987765211 112 2233344 788865 555543221157777753 222333
Q ss_pred HHHHHHHHhhccCceEEEE
Q 011084 245 ISNVCTDALSAEKYYYFIR 263 (494)
Q Consensus 245 I~nl~~da~S~~k~~~~Ve 263 (494)
...+......+ +++.|+-
T Consensus 117 ~~~l~~~~~g~-~~i~~i~ 134 (305)
T 3g1w_A 117 AYKMAELLDGE-GEVAVIT 134 (305)
T ss_dssp HHHHHHHTTTC-EEEEEEE
T ss_pred HHHHHHHhCCC-cEEEEEe
Confidence 33443222233 4466665
No 21
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=84.04 E-value=0.81 Score=45.24 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=37.4
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH--HHHHHHHHHHHH
Q 011084 180 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVCT 250 (494)
Q Consensus 180 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~--~~~~~~I~nl~~ 250 (494)
+.|.+|++|||||+-.|+.... +. ++|+||.. -++||-|.. +.+-+.+..+..
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~------------G~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT------------GRVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC------------SSSCTTCCBBTTBCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC------------CCCccccccCHHHHHHHHHHHHh
Confidence 5689999999999987765431 33 89999983 277887764 344556666654
No 22
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=81.21 E-value=2 Score=44.30 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC----------------CCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK----------------CPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~----------------~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..+|-.+...+ ..+++|.||-|-
T Consensus 91 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp BHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 5688999999999999999999999988988888875432111 358999999764
No 23
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=79.69 E-value=3 Score=42.85 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++- + . .+++|.||-|
T Consensus 91 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~-~--~--~~p~i~IPTT 139 (387)
T 3uhj_A 91 CTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAI-D--T--GARIVIAPTI 139 (387)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-H--T--TCEEEECCSS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHH-h--c--CCCEEEecCc
Confidence 4578899999999999999999999888888888873 3 2 5899999988
No 24
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=79.39 E-value=3 Score=42.51 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|- .|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 73 PIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY-AG 124 (364)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS-SC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc-cc
Confidence 57889999999999999999999998888888888753 2 47999999887 53
No 25
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=79.35 E-value=3.9 Score=41.36 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
.+..+++.+.+++.+.|.+|-|||--.++.|..+| +++ .+++|.||-|
T Consensus 72 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~~----~~p~i~IPTT 119 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DEL----DAYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HHH----TCEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-Hhc----CCCEEEeccc
Confidence 46788999999999999999999988888888888 332 4899999988
No 26
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=78.11 E-value=3.3 Score=42.03 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 74 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 74 PIESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788999999999999999999998888888888753 2 47999999874
No 27
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=77.61 E-value=4.3 Score=41.07 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-. . .+++|.||-|-
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa 121 (353)
T 3hl0_A 72 PVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY 121 (353)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS
T ss_pred cHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46789999999999999999999998888888887752 2 48999999887
No 28
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=77.55 E-value=30 Score=32.15 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=64.4
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+|||++..-.-|-...++.|+-+++++. +.++. +.... .
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 45 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAI---------------------------------ALDAG---R 45 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEcCC---C
Confidence 3468999998777777777888888887643 22221 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 237 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA 237 (494)
+.+.....++.+...++|++|+.+.+.+.... ..+.+.+.+ ++||.+= .+.+... .++++|-.
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~~~~--iPvV~~~----~~~~~~~--~~V~~D~~ 108 (291)
T 3l49_A 46 NDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP--WLQKINDAG--IPLFTVD----TATPHAI--NNTTSNNY 108 (291)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH--HHHHHHHTT--CCEEEES----CCCTTCS--EEEEECHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH--HHHHHHHCC--CcEEEec----CCCCCcC--ceEecChH
Confidence 24556677888899999999999887543222 223344444 6888764 4443222 46777643
No 29
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=77.04 E-value=1.7 Score=43.13 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=24.8
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 179 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+.|.+|++|||||+-.|+..... . +++++|||
T Consensus 74 ~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 74 DGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp --CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred cCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 478999999999998887655322 2 47999998
No 30
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=76.92 E-value=4.8 Score=41.11 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~-------------~~~i~VIgVPkTIDND 222 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--.|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 568899999999999999999999988888888887654211 1258999999887543
No 31
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=75.90 E-value=4.8 Score=40.90 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc---------------CCCCeEEEeeecccC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---------------KCPTKVVGVPVTLNG 221 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~---------------~~~i~VIgVPkTIDN 221 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--.
T Consensus 73 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gt 144 (386)
T 1rrm_A 73 TITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGT 144 (386)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCc
Confidence 578899999999999999999999998888888887654211 125899999987743
No 32
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=74.20 E-value=13 Score=34.85 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=65.6
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
.+|||++..-.-|-...++.|+-+.+++. +.++.-+ ... .+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~~ 57 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLT---------------------------------STN---NNP 57 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TCH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---CCh
Confidence 78999999888888888999998887643 3333211 111 124
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHH-HHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNT-DAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~-~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+...+.++.+...++|++|+.+.+.+.. ....+.+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 58 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 121 (298)
T 3tb6_A 58 DNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAA-PSFTLDD 121 (298)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSS-CEEEECH
T ss_pred HHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCC-CEEEeCc
Confidence 4556778888899999999999875421 0111223343444 688854 555543332 4677664
No 33
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=73.12 E-value=4.7 Score=40.51 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.++ |.+|-|||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 121 (343)
T 3clh_A 67 NFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FR--GIDFINIPTTL 121 (343)
T ss_dssp SHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEeCCch
Confidence 56889999999999999 9999999988888887776432 23 58999999775
No 34
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=73.03 E-value=2 Score=43.97 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=67.6
Q ss_pred CCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcc----cccc
Q 011084 83 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD----MLGR 158 (494)
Q Consensus 83 ~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~----~lgS 158 (494)
...+++|+||.= -..|.....+..+++.+.+. +.+||-=.. +. +.+. +...-.+. -...
T Consensus 35 ~~~~k~I~iv~K-~~~~~~~~~~~~l~~~L~~~--~~~V~ve~~---------~~----~~~~-~~~~~~~~~~~~~~~~ 97 (365)
T 3pfn_A 35 NKSPKSVLVIKK-MRDASLLQPFKELCTHLMEE--NMIVYVEKK---------VL----EDPA-IASDESFGAVKKKFCT 97 (365)
T ss_dssp SSCCCEEEEEEC-TTCGGGHHHHHHHHHHHHHT--SCEEEEEHH---------HH----HSHH-HHHCSTTHHHHHHCEE
T ss_pred CCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHC--CCEEEEehH---------Hh----hhhc-cccccccccccccccc
Confidence 346789999975 34577777788888888653 456653111 00 0000 00000000 0000
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHH
Q 011084 159 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 238 (494)
Q Consensus 159 ~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~ 238 (494)
-+..+.. -..+.|.+|++|||||+-.|+.+.. +..++|+||= . -++||-|-.
T Consensus 98 ~~~~~~~-----------~~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN---------~---G~LGFLt~~ 149 (365)
T 3pfn_A 98 FREDYDD-----------ISNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFH---------L---GSLGFLTPF 149 (365)
T ss_dssp ECTTTCC-----------CTTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEE---------S---SSCTTTCCE
T ss_pred cccChhh-----------cccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEc---------C---CCCccceee
Confidence 0001100 1147899999999999988887642 4468999995 1 377886643
Q ss_pred --HHHHHHHHHHH
Q 011084 239 --KVNSQLISNVC 249 (494)
Q Consensus 239 --~~~~~~I~nl~ 249 (494)
+-+.+.+..+.
T Consensus 150 ~~~~~~~~l~~vl 162 (365)
T 3pfn_A 150 SFENFQSQVTQVI 162 (365)
T ss_dssp ESTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 23445555554
No 35
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=72.81 E-value=4.9 Score=40.79 Aligned_cols=58 Identities=26% Similarity=0.223 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------------~~~~i~VIgVPkTIDND 222 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+.. ....+++|.||-|-..+
T Consensus 83 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 83 SFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp BHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 57889999999999999999999999889888888764331 00358999999775443
No 36
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=72.74 E-value=22 Score=32.72 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=62.3
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
+|||++..-..|-...++.|+-+++++. +.++. +-..... .+.+
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~~~-~~~~ 45 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEA--GVTLL---------------------------------HRSTKDD-GDIA 45 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHH--TCEEE---------------------------------ECCCSST-TCHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCCCC-CCHH
Confidence 7999998888888888899998887653 22221 0000011 1345
Q ss_pred HHHHHHHHHHHcC-CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 168 QVNAALTACKNLN-LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 168 ~~~~~~~~l~~~~-Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
...+.++.+...+ +|++|+.+-+..... ..+ +.+.+.+ ++||.+ |++........++++|-
T Consensus 46 ~~~~~i~~l~~~~~vdgii~~~~~~~~~~-~~~-~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~ 107 (276)
T 3ksm_A 46 GQIQILSYHLSQAPPDALILAPNSAEDLT-PSV-AQYRARN--IPVLVV----DSDLAGDAHQGLVATDN 107 (276)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCSSEEEECCH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CcEEEE----ecCCCCCCcceEEccCH
Confidence 5567778888888 999999986533211 112 2233344 788876 44444333224566663
No 37
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=72.74 E-value=23 Score=32.93 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+|||++..-..|-...++.|+-+++++. +.++.-+ ...
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~--- 46 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--GYIGVLF---------------------------------DAN--- 46 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--TCEEEEE---------------------------------ECT---
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---
Confidence 34578999998777777778888888877543 3333211 011
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++||+|+.+.+. . . ..+.+.+. +++||.+ |+++....+ .++++|-
T Consensus 47 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~---~-~~~~l~~~--~iPvV~i----~~~~~~~~~-~~V~~D~ 107 (276)
T 3jy6_A 47 ADIEREKTLLRAIGSRGFDGLILQSFSN-P---Q-TVQEILHQ--QMPVVSV----DREMDACPW-PQVVTDN 107 (276)
T ss_dssp TCHHHHHHHHHHHHTTTCSEEEEESSCC-H---H-HHHHHHTT--SSCEEEE----SCCCTTCSS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCc-H---H-HHHHHHHC--CCCEEEE----ecccCCCCC-CEEEECh
Confidence 1234556778889999999999999887 2 2 22334334 4788865 555543332 4666663
No 38
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=72.68 E-value=19 Score=33.59 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=63.6
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+|||++..-..|=...++.|+-+++++. +.++.-+ .+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~--- 47 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVA---------------------------------TSQ--- 47 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECS---
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------CCC---
Confidence 34578999998877777777888888877643 3332211 011
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++|++|+.+.+..... . +.+.+.+.+ ++||.+ |.+....+.-.++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~-~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 112 (293)
T 3l6u_A 48 NSRISEREQILEFVHLKVDAIFITTLDDVYIG-S-AIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSNN 112 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-H-HHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-H-HHHHHHHcC--CCEEEe----cCCCCCCcceeEEecCH
Confidence 13455567788888999999999987765421 1 122333344 788876 44444321115677664
No 39
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=72.56 E-value=4.7 Score=40.64 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.++ |.+|-|||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 72 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~r--gip~i~IPTT~ 126 (354)
T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LR--GVHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECST
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEECCcc
Confidence 56889999999999999 9999999988888888777532 23 48999999665
No 40
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=72.15 E-value=7.8 Score=39.41 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------c------CCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------A------KCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------~------~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..+|-.... . ...+++|.||-|-
T Consensus 77 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 77 KDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 57889999999999999999999999888888887754210 0 1257999999776
No 41
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=71.93 E-value=1.7 Score=41.91 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=25.5
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 179 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+.|.+|++|||||+-.|+... .+ +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~-----~~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKA-----AD-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTB-----CT-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHh-----CC-CCCEEEEE
Confidence 3789999999999988876442 13 68999998
No 42
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=70.38 E-value=38 Score=31.45 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=59.4
Q ss_pred CCceEEEEEecC--CCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCC
Q 011084 84 HPAIRVGIVFCG--RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 84 ~~~~~IgIl~sG--G~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
.+..+||+++.. -..|-...++.|+-+++++. +.++. +....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~- 60 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLL---------------------------------LADGK- 60 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCT-
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC-
Confidence 345789999976 66677778888888877542 22211 11111
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-cCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-AKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++|++|+.+.+.+.. .+ +.+.+ . +++||.+- .+.....+ .++++|-
T Consensus 61 --~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~--~iPvV~~~----~~~~~~~~-~~V~~d~ 123 (296)
T 3brq_A 61 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAH--SQPIMVLN----RRLRKNSS-HSVWCDH 123 (296)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTC--SSCEEEES----CCCSSSGG-GEECCCH
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcC--CCCEEEEc----cccCCCCC-CEEEEch
Confidence 1234455677888889999999998865432 22 23333 3 46888653 33332222 4667664
No 43
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=69.89 E-value=1.8 Score=44.79 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=25.9
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCC-eEEEee
Q 011084 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVP 216 (494)
Q Consensus 179 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i-~VIgVP 216 (494)
.+.|.+|++|||||+-.|+.... +.++ +|+||+
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN 146 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFA 146 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEE
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEE
Confidence 35899999999999998875532 2356 799997
No 44
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=69.75 E-value=9.3 Score=35.97 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=64.1
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+|||++..-..|=...++.|+-+.+++. +.++.-+. ..
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~--- 47 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLAN---------------------------------TA--- 47 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT---
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---
Confidence 34578999998877777778888888877643 33332111 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++|++|+.+.+.+.. .+ +.+.+. +++||. +|++.....+ .++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~~~~~--~iPvV~----~~~~~~~~~~-~~V~~D~ 109 (291)
T 3egc_A 48 EDIVREREAVGQFFERRVDGLILAPSEGEHD---YL-RTELPK--TFPIVA----VNRELRIPGC-GAVLSEN 109 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSCCH---HH-HHSSCT--TSCEEE----ESSCCCCTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCChH---HH-HHhhcc--CCCEEE----EecccCCCCC-CEEEECc
Confidence 1245556778889999999999999876322 22 223223 578885 4555543332 4666664
No 45
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=69.35 E-value=7.1 Score=39.93 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeeccc
Q 011084 165 TTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTLN 220 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~---Id~LviIGGd~S~~~A~~Lae~~~~~-------------~~~i~VIgVPkTID 220 (494)
+.+..+++++.+++.+ .|.+|-|||--+++.|..+|-.+... +-.+++|.||-|--
T Consensus 91 t~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 91 TTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp BHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 5788999999999999 99999999998898888887543110 12479999997753
No 46
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=68.86 E-value=7.3 Score=39.88 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcC--C---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLN--L---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~--I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.+ + |.+|-+||--.++.|..+|--+ .++ +++|.||-|.
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 85 SRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp SHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 5688999999999999 9 9999999988888877776533 234 7999999553
No 47
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=68.77 E-value=7.9 Score=39.74 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~-------------~~~~i~VIgVPkTI 219 (494)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+.. ....+++|.||-|-
T Consensus 86 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTa 153 (407)
T 1vlj_A 86 VLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTIS 153 (407)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 56889999999999999999999999889888888754210 01357999999764
No 48
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=67.93 E-value=33 Score=32.60 Aligned_cols=105 Identities=15% Similarity=0.032 Sum_probs=64.6
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
..+|||++..-.-|=...++.|+-+++++. +.++.- ..+. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~---~~ 44 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--GYKTDL---------------------------------QYAD---DD 44 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--TCEEEE---------------------------------EECT---TC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--CCEEEE---------------------------------eeCC---CC
Confidence 468999999888888888889998887643 222211 0111 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCC-CCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN-QFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~-~~ie~S~GFdT 236 (494)
.+...+.++.+...++|++|+.+-+..... ..+ +.+.+.| ++||.+ |++..+ ..+..++|+|-
T Consensus 45 ~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D~ 108 (330)
T 3uug_A 45 IPNQLSQIENMVTKGVKVLVIASIDGTTLS-DVL-KQAGEQG--IKVIAY----DRLIRNSGDVSYYATFDN 108 (330)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSGGGGH-HHH-HHHHHTT--CEEEEE----SSCCCSCTTCCEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCchhHH-HHH-HHHHHCC--CCEEEE----CCCCCCCCceeEEEEeCH
Confidence 445566778888899999999987753211 112 2333344 788865 555544 23334777663
No 49
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=67.71 E-value=5.6 Score=39.59 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 174 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 174 ~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+.+...+.|.+|++|||||...+..- +.+.+.++++.+||.==-||+.
T Consensus 74 ~~~~~~~~d~vvv~GGDGTv~~v~~~---l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 74 ERAMHENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHTTTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHhhcCCCEEEEEcCchHHHHHHHH---HHhCCCCCcEEEecCCcHhHHH
Confidence 33444578999999999998776533 2223557899999976667775
No 50
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=67.45 E-value=15 Score=33.94 Aligned_cols=103 Identities=11% Similarity=0.127 Sum_probs=63.9
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
..+|||++..-.-|=...++.|+-+++++. +.++.-+ ... .+
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~ 43 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR--GYQLLIA---------------------------------SSD---DQ 43 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---CC
Confidence 368999998877777888888888887643 3333211 111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+...+.++.+...++|++|+.+.+.... ..+ +.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 44 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~--~~~-~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~d~ 104 (272)
T 3o74_A 44 PDSERQLQQLFRARRCDALFVASCLPPED--DSY-RELQDKG--LPVIA----IDRRLDPAHF-CSVISDD 104 (272)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSC--CHH-HHHHHTT--CCEEE----ESSCCCTTTC-EEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccH--HHH-HHHHHcC--CCEEE----EccCCCcccc-CEEEEch
Confidence 45556778888999999999998773311 112 2333344 67874 4666654432 4666663
No 51
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=66.94 E-value=4.8 Score=40.41 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 222 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND 222 (494)
+.+..+++ +.+++.+.|.+|-|||--.++.|..+| +++ .+++|.||-|.-.|
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~~----~~p~i~IPTT~~tg 125 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FLR----KLPFISVPTSTSND 125 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HHH----TCCEEEEESCCSSG
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hhc----CCCEEEecCcccCC
Confidence 45778888 889999999999999988888888887 442 47999999776543
No 52
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.92 E-value=30 Score=33.34 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=63.4
Q ss_pred CCceEEEEEecC--CCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCC
Q 011084 84 HPAIRVGIVFCG--RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 84 ~~~~~IgIl~sG--G~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
.+..+||+++.. -..|=...++.|+-+.+++. +.++. +..+.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~- 102 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLL---------------------------------LADGK- 102 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT-
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC-
Confidence 345789999987 56666777788888877643 22221 11111
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 162 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 162 k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++||+|+.+.+.+... +.+.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 103 --~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 165 (338)
T 3dbi_A 103 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMV----LNRRLRKNSS-HSVWCDH 165 (338)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEE----ESSCCSSSGG-GEECBCH
T ss_pred --CChHHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEE----EcCCCCCCCC-CEEEECh
Confidence 12344556778889999999999987766432 333333334 67775 4555554332 4566663
No 53
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=65.78 E-value=58 Score=30.26 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=65.3
Q ss_pred CCceEEEEEecCC-CCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 84 HPAIRVGIVFCGR-QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 84 ~~~~~IgIl~sGG-~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
.+..+|||++..- ..|=...++.|+-+++++.. +..+. +......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-g~~~~---------------------------------~~~~~~~ 51 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-DFNIS---------------------------------ANITHYD 51 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-GGCEE---------------------------------EEEEEEC
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-hCCeE---------------------------------EEEEcCC
Confidence 4567999999887 78888888899888876430 11111 1000000
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchH-HHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSN-TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~-~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
-.+.+...+.++.+...++|++|+.+-+... ... + +.+.+.+ ++||.+ |++++...--.++++|-
T Consensus 52 ~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~--~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 117 (304)
T 3gbv_A 52 PYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF--T-DALNELG--IPYIYI----DSQIKDAPPLAFFGQNS 117 (304)
T ss_dssp SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH--H-HHHHHHT--CCEEEE----SSCCTTSCCSEEEECCH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH--H-HHHHHCC--CeEEEE----eCCCCCCCceEEEecCh
Confidence 1245666778888999999999999887542 221 2 2233334 688765 45444321115667664
No 54
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=65.44 E-value=35 Score=32.14 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=58.1
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
..+|||++..-..|-...++.|+-+++++. +.++. +. ... ...+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~~-~~~-~~~~ 46 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--KVDLQ--------------------------------IL-APP-GAND 46 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--TCEEE--------------------------------EE-CCS-SSCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--CcEEE--------------------------------EE-CCC-CcCC
Confidence 468999998887888888889988887653 22221 00 100 0124
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
.+...+.++.+...++|++|+.+-+..... ..+ +.+.+.+ ++||.+=..+
T Consensus 47 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~-~~~~~~g--iPvV~~~~~~ 96 (297)
T 3rot_A 47 VPKQVQFIESALATYPSGIATTIPSDTAFS-KSL-QRANKLN--IPVIAVDTRP 96 (297)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCSSTTH-HHH-HHHHHHT--CCEEEESCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CCEEEEcCCC
Confidence 556677888899999999999887655211 112 2233334 7888654333
No 55
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=64.18 E-value=8.7 Score=39.60 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.++ |.+|-+||--.++.|..+|-.+ .+ ++++|.||-|.
T Consensus 105 t~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~-~r--gip~I~IPTTl 159 (390)
T 3okf_A 105 TLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY-QR--GVDFIQIPTTL 159 (390)
T ss_dssp BHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred hHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh-cC--CCCEEEeCCCC
Confidence 56889999999999999 6999999988888887776432 23 48999999775
No 56
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=64.12 E-value=8.9 Score=38.60 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.++ |.+|-|||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 120 (348)
T 1ujn_A 66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LR--GVAYLAFPTTT 120 (348)
T ss_dssp SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcH
Confidence 46789999999999998 8999999988888887777532 22 48999999763
No 57
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=63.05 E-value=37 Score=31.66 Aligned_cols=81 Identities=7% Similarity=0.058 Sum_probs=56.9
Q ss_pred CCCEEEEEccchhhhhcC---------CeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEe
Q 011084 117 PKSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187 (494)
Q Consensus 117 ~~~~v~Gf~~G~~GL~~~---------~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviI 187 (494)
....++|.=+|..=|++. ++=-++++..+.|...| . ++-....| +..+++++++.+.+++.+-++++
T Consensus 21 ~~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~-i~~~p~eK--D~TD~e~Al~~a~~~~~~~I~i~ 96 (212)
T 3l8m_A 21 KHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-E-INPYNSEK--DDTDLALGIDQAVKRGYRNIDVY 96 (212)
T ss_dssp TTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-B-CCCCC-----CBCHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-c-EEEECCcC--CCCHHHHHHHHHHHCCCCEEEEE
Confidence 356788888888877763 44456777888887776 3 54332222 34579999999999999999999
Q ss_pred cCcch-----HHHHHHHHH
Q 011084 188 GGVTS-----NTDAAYLAE 201 (494)
Q Consensus 188 GGd~S-----~~~A~~Lae 201 (494)
|+-|. +.+...|..
T Consensus 97 Ga~GgR~DH~lani~ll~~ 115 (212)
T 3l8m_A 97 GATGGRLDHFMGALQILEK 115 (212)
T ss_dssp SCSSSCHHHHHHHHHHHTC
T ss_pred cCCCCchhHHHHHHHHHHh
Confidence 99875 455555543
No 58
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=62.84 E-value=96 Score=28.63 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=65.2
Q ss_pred CCceEEEEEecC-----CCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccc
Q 011084 84 HPAIRVGIVFCG-----RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR 158 (494)
Q Consensus 84 ~~~~~IgIl~sG-----G~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS 158 (494)
.+..+|||++.. -..|-...++.|+-+++++. +.++. +..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~ 50 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALY---------------------------------MST 50 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEE---------------------------------ECC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEe
Confidence 345789999988 77788888889998887643 22221 101
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 159 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 159 ~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.. .+.+...+.++.+...++||+|+.+.+.+... .+.+.+.+ ++||.+ |++.....--.++++|-
T Consensus 51 ~~---~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 115 (292)
T 3k4h_A 51 GE---TEEEIFNGVVKMVQGRQIGGIILLYSRENDRI----IQYLHEQN--FPFVLI----GKPYDRKDEITYVDNDN 115 (292)
T ss_dssp CC---SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHH----HHHHHHTT--CCEEEE----SCCSSCTTTSCEEECCH
T ss_pred CC---CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHHCC--CCEEEE----CCCCCCCCCCCEEEECc
Confidence 11 12345567888899999999999988765322 23333344 678754 55554332115676664
No 59
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=62.40 E-value=10 Score=38.64 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.++ |.+|-+||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 85 t~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~r--gip~i~IPTTl 139 (368)
T 3qbe_A 85 DLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LR--GVSIVHLPTTL 139 (368)
T ss_dssp BHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GG--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-cc--CCcEEEECCCC
Confidence 45788999999999886 9999999988888888777533 23 47999999774
No 60
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=62.20 E-value=9.5 Score=37.87 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHcCCCEEEEecCcchHHHHHH-HHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 176 CKNLNLDGLVIIGGVTSNTDAAY-LAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 176 l~~~~Id~LviIGGd~S~~~A~~-Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+...+.|.+|++|||||+..+.. |.+. ..+.++++..||.==-||+.
T Consensus 78 ~~~~~~d~vvv~GGDGTl~~v~~~l~~~--~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 78 ARKFGVATVIAGGGDGTINEVSTALIQC--EGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHHHHC--CSSCCCEEEEEECSSSCHHH
T ss_pred HHhcCCCEEEEEccchHHHHHHHHHhhc--ccCCCCeEEEecCcCHHHHH
Confidence 33457899999999999877543 3321 01456888889975556664
No 61
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=62.14 E-value=37 Score=32.52 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=66.9
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhc------C---------CeeecCHhHHhccccc
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA------Q---------KTLEVTKEILSTYKNQ 150 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~------~---------~~ieLt~~~v~~~~n~ 150 (494)
.++-++|+++|+-|- ..+-+.+. ..-+++.=+|..=|++ . ++=-++++..+.|...
T Consensus 20 ~~~~~lIv~ng~~~~---~~~~~~~~------~~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~~ 90 (247)
T 3s4y_A 20 NLKYCLVILNQPLDN---YFRHLWNK------ALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATK 90 (247)
T ss_dssp CCCEEEEECSSCCCT---THHHHHHH------CSCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHHT
T ss_pred CCCEEEEEECCcchH---HHHHHHhh------CCEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHhc
Confidence 345677777888772 33333321 3457899888877776 2 3334667777888877
Q ss_pred CCcccccccCCCCCChHHHHHHHHHHHHc------CCCEEEEecCcch-----HHHHHHHHHH
Q 011084 151 GGYDMLGRTKDQIRTTEQVNAALTACKNL------NLDGLVIIGGVTS-----NTDAAYLAET 202 (494)
Q Consensus 151 GG~~~lgS~R~k~~~~e~~~~~~~~l~~~------~Id~LviIGGd~S-----~~~A~~Lae~ 202 (494)
|-. ++-. .-++..+++++++.+.+. +.+-++++|+-|. +.+...|..+
T Consensus 91 ~~~-i~~~---peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lani~lL~~~ 149 (247)
T 3s4y_A 91 GCE-LIST---PDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQA 149 (247)
T ss_dssp TCE-EEEC---CCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHHHHHHHHG
T ss_pred CCE-EEEC---CCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHHHHHHHHH
Confidence 643 5532 223445788888887764 7899999999876 4444555443
No 62
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=60.12 E-value=33 Score=32.08 Aligned_cols=107 Identities=11% Similarity=0.175 Sum_probs=63.1
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+|||++..-..|-...++.|+-+++++. +.++.-+ .... ..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~---------------------------------~~~~-~~ 47 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--GVNLRVL---------------------------------EAGG-YP 47 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--TCEEEEE---------------------------------ECSS-TT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCeEEEE---------------------------------cCCC-CC
Confidence 4578999998877777788888888887654 2222111 0110 01
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC-----CCCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK-----NQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~-----~~~ie~S~GFdT 236 (494)
+.+...+.++.+...++|++|+.+.+..... ..+ +.+. . +++||.+ |++.. ......++++|-
T Consensus 48 ~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-~~~-~~~~-~--~iPvV~~----~~~~~~~~~~~~~~~~~V~~D~ 115 (304)
T 3o1i_D 48 NKSRQEQQLALCTQWGANAIILGTVDPHAYE-HNL-KSWV-G--NTPVFAT----VNQLDLDEEQSTLLKGEVGVDW 115 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSSTTSST-TTH-HHHT-T--TSCEEEC----SSCCCCCTTTGGGEEEECCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-HHH-HHHc-C--CCCEEEe----cCCCcccccCCCceEEEEecCH
Confidence 3455667788888899999999987654111 112 2232 2 4788864 55542 111125677763
No 63
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=59.38 E-value=7.6 Score=39.34 Aligned_cols=48 Identities=25% Similarity=0.211 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+.+..+++.+.+++ +.|.+|-|||--.++.|..+| ++ + .+++|.||-|
T Consensus 80 ~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA-~~--~--~~p~i~IPTT 127 (376)
T 1kq3_A 80 SDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVA-YK--L--KKPVVIVPTI 127 (376)
T ss_dssp BHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHH-HH--T--TCCEEEEESS
T ss_pred CHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHH-Hh--c--CCCEEEecCc
Confidence 34678888888888 999999999998888888887 33 2 4899999988
No 64
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=59.08 E-value=75 Score=30.57 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=56.4
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+||+++..-.-|=...++.|+-+.+.+. +.++.- .....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~~-- 108 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDT--ELQPVV---------------------------------GVTDY-- 108 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSS--SSEEEE---------------------------------EECTT--
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCCC--
Confidence 34578999998777777778888888876532 333321 11110
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+.+...+.++.+...++||+|+.+-+.+-... +.+.+.+ ++||.+
T Consensus 109 -~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 109 -LPEKEEKVLYEMLSWRPSGVIIAGLEHSEAAR----AMLDAAG--IPVVEI 153 (344)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEECSCCCHHHH----HHHHHCS--SCEEEE
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEECCCCCHHHH----HHHHhCC--CCEEEE
Confidence 23455677888889999999999877654222 3333444 677766
No 65
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=58.17 E-value=9.7 Score=37.31 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 171 ~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
+.++.+.+ +.|.+|++|||||...+. ..+...+.++++-.||.==-||+.
T Consensus 55 ~~~~~~~~-~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 55 KYCQEFAS-KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHTT-TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHhhc-CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHH
Confidence 34444443 889999999999987643 222222356899999987777775
No 66
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=57.30 E-value=9.3 Score=39.99 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+.+..+++.+.+++ +.|.+|-|||--.++.|..+| ++ + .+++|.||-|
T Consensus 131 ~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA-~~--~--giP~I~IPTT 178 (450)
T 1ta9_A 131 SLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIA-HS--M--NLPSIICPTT 178 (450)
T ss_dssp CHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHH-HH--T--TCCEEEEESS
T ss_pred CHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHH-Hh--c--CCCEEEEeCC
Confidence 34678888888888 999999999998898888888 33 2 4799999988
No 67
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=57.22 E-value=13 Score=37.63 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~I---d~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+.+..+++.+.+++.++ |.+|-+||--.++.|...|-.+ .+ ++++|.||-|.
T Consensus 76 ~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~r--gip~i~IPTTl 130 (368)
T 2gru_A 76 TLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FR--GIALIHVPTTF 130 (368)
T ss_dssp SHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cC--CCCEEEECCch
Confidence 56788999999999995 9999999988888877776532 23 48999999775
No 68
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=55.19 E-value=52 Score=31.11 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=54.5
Q ss_pred ccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC
Q 011084 81 ITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 81 ~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
.....++||+|+.||.. .....+++++.....+.+|.++.--. .+ ..+..+...=|-..+--..
T Consensus 17 ~~~~~~~rI~~l~SG~g-----~~~~~~l~~l~~~~~~~~I~~Vvt~~-----~~------~~~~~~A~~~gIp~~~~~~ 80 (229)
T 3auf_A 17 YFQGHMIRIGVLISGSG-----TNLQAILDGCREGRIPGRVAVVISDR-----AD------AYGLERARRAGVDALHMDP 80 (229)
T ss_dssp SCBTTCEEEEEEESSCC-----HHHHHHHHHHHTTSSSEEEEEEEESS-----TT------CHHHHHHHHTTCEEEECCG
T ss_pred cccCCCcEEEEEEeCCc-----HHHHHHHHHHHhCCCCCeEEEEEcCC-----Cc------hHHHHHHHHcCCCEEEECc
Confidence 34455689999999984 23455666654332245776665210 00 0111111122222221122
Q ss_pred CCCCChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 161 DQIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 161 ~k~~~~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
.++.+.+.+ +.+++.|++++.|.+|+. |.+-.-....|..
T Consensus 81 ~~~~~r~~~~~~~~~~l~~~~~Dliv~a-gy~~IL~~~~l~~ 121 (229)
T 3auf_A 81 AAYPSRTAFDAALAERLQAYGVDLVCLA-GYMRLVRGPMLTA 121 (229)
T ss_dssp GGSSSHHHHHHHHHHHHHHTTCSEEEES-SCCSCCCHHHHHH
T ss_pred ccccchhhccHHHHHHHHhcCCCEEEEc-ChhHhCCHHHHhh
Confidence 334444444 457888999999976666 4665555555543
No 69
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=54.61 E-value=44 Score=31.11 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=50.8
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEc---cchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL---GGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~---~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
+||||+.||.- .....++++.+....+.+|.++. ....|+ .+...=|-..+--...++
T Consensus 1 ~riaVl~SG~G-----s~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~--------------~~A~~~gIp~~~~~~~~~ 61 (209)
T 1meo_A 1 ARVAVLISGTG-----SNLQALIDSTREPNSSAQIDIVISNKAAVAGL--------------DKAERAGIPTRVINHKLY 61 (209)
T ss_dssp CEEEEEESSSC-----TTHHHHHHHHHSTTCSCEEEEEEESSTTCHHH--------------HHHHHTTCCEEECCGGGS
T ss_pred CeEEEEEECCc-----hHHHHHHHHHhcCCCCcEEEEEEeCCCChHHH--------------HHHHHcCCCEEEECcccc
Confidence 48999999875 34556666654333356777765 233332 111111211211112223
Q ss_pred CChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 011084 164 RTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (494)
Q Consensus 164 ~~~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~La 200 (494)
.+.+.+ +.+.+.|++++.|.+|+.| .+-.-....|.
T Consensus 62 ~~r~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~ 98 (209)
T 1meo_A 62 KNRVEFDSAIDLVLEEFSIDIVCLAG-FMRILSGPFVQ 98 (209)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEES-CCSCCCHHHHH
T ss_pred CchhhhhHHHHHHHHhcCCCEEEEcc-hhhhCCHHHHh
Confidence 444444 4678889999999777765 55444444454
No 70
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=52.32 E-value=62 Score=30.40 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=58.7
Q ss_pred CCEEEEEccchhhhhc---------CCeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEec
Q 011084 118 KSTLLGFLGGSEGLFA---------QKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIG 188 (494)
Q Consensus 118 ~~~v~Gf~~G~~GL~~---------~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIG 188 (494)
...++|.=+|..=|++ +++=.++++..+.|...|- .++-....| +..++++|++.+.+++.+-++++|
T Consensus 25 ~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~i~~~p~eK--D~TD~e~Al~~a~~~g~~~I~i~G 101 (222)
T 3lm8_A 25 HTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAP-ALHVYQAEK--DQTDLDLALDWALEKQPDIIQIFG 101 (222)
T ss_dssp TEEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCT-TCEEECCCS--SSCHHHHHHHHHHHHCCSEEEEES
T ss_pred CCEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCC-eEEEeCCCC--CCCHHHHHHHHHHHcCCCEEEEEc
Confidence 3578888888887775 3444567777777777653 244332232 345799999999999999999999
Q ss_pred Ccch-----HHHHHHHHHHHH
Q 011084 189 GVTS-----NTDAAYLAETFA 204 (494)
Q Consensus 189 Gd~S-----~~~A~~Lae~~~ 204 (494)
+-|. +.+...|..+++
T Consensus 102 a~GgR~DH~lani~ll~~~~~ 122 (222)
T 3lm8_A 102 ITGGRADHFLGNIQLLYKGVK 122 (222)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHh
Confidence 9875 666666666543
No 71
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=50.64 E-value=75 Score=29.62 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=55.6
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
+.+||+++..-.-|=...++.|+-+++++. +.++. +. ++ .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~~-~~----~~ 42 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVI--------------------------------KI-AV----PD 42 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--TEEEE--------------------------------EE-EC----CS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--CCEEE--------------------------------Ee-CC----CC
Confidence 478999998777777777888888877654 11111 11 11 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+...+.++.+...++|++|+.+-+..... ..+ +.+.+.+ ++||.+
T Consensus 43 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~-~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 43 GEKTLNAIDSLAASGAKGFVICTPDPKLGS-AIV-AKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGHH-HHH-HHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCchhhH-HHH-HHHHHCC--CcEEEe
Confidence 455567788888899999999987765322 112 2333344 788765
No 72
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=49.42 E-value=35 Score=32.03 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+|||++ .-.-|=...++.|+-+.+++. +.++.-+ .....
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~~~- 52 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRR--GYDVMLS---------------------------------AVAPS- 52 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------EEBTT-
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCCCC-
Confidence 3457899999 666677777888888877643 3333211 11111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+ ..+.++.+...++||+|+.+.+.+. ..+ +.+.+ +++||.+ |++.....+ .++++|-
T Consensus 53 --~~-~~~~~~~l~~~~vdgiIi~~~~~~~---~~~-~~~~~---~iPvV~i----~~~~~~~~~-~~V~~D~ 110 (289)
T 3k9c_A 53 --RA-EKVAVQALMRERCEAAILLGTRFDT---DEL-GALAD---RVPALVV----ARASGLPGV-GAVRGDD 110 (289)
T ss_dssp --BC-HHHHHHHHTTTTEEEEEEETCCCCH---HHH-HHHHT---TSCEEEE----SSCCSSTTS-EEEEECH
T ss_pred --HH-HHHHHHHHHhCCCCEEEEECCCCCH---HHH-HHHHc---CCCEEEE----cCCCCCCCC-CEEEeCh
Confidence 11 3456677888999999999987764 222 22332 4788854 555543332 4666664
No 73
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=48.50 E-value=65 Score=30.35 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=62.9
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+|||++..-.-|=...++.|+-+.+++. +.++. +..+..
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~-- 55 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--STDVL---------------------------------LGQIDA-- 55 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--TCCEE---------------------------------EEECCS--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCCC--
Confidence 44578999998888888888889998887643 22221 111111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+...+.++.+...++||+|+.+.+.+.. ..+ +.+.+ +++||.+ |.+... .+ .++++|-
T Consensus 56 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~-~~l~~---~iPvV~i----~~~~~~-~~-~~V~~D~ 115 (303)
T 3kke_A 56 -PPRGTQQLSRLVSEGRVDGVLLQRREDFDD--DML-AAVLE---GVPAVTI----NSRVPG-RV-GSVILDD 115 (303)
T ss_dssp -TTHHHHHHHHHHHSCSSSEEEECCCTTCCH--HHH-HHHHT---TSCEEEE----SCCCTT-CC-CEEEECH
T ss_pred -ChHHHHHHHHHHHhCCCcEEEEecCCCCcH--HHH-HHHhC---CCCEEEE----CCcCCC-CC-CEEEECc
Confidence 234456778889999999999999876632 123 23333 4788865 444443 21 4677663
No 74
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=48.27 E-value=38 Score=31.13 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=60.0
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
..+||+++..-..|-...++.|+-+.+++. +.++ ++.... .+
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~---------------------------------~~~~~~---~~ 44 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--GYQL---------------------------------LLGYSD---YS 44 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--SCEE---------------------------------CCEECT---TC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--CCEE---------------------------------EEEcCC---CC
Confidence 358999997766666677778887776542 2111 111111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+...+.++.+...++|++|+.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 45 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 104 (275)
T 3d8u_A 45 IEQEEKLLSTFLESRPAGVVLFGSEHSQRTH----QLLEASN--TPVLEI----AELSSKASY-LNIGVDH 104 (275)
T ss_dssp HHHHHHHHHHHHTSCCCCEEEESSCCCHHHH----HHHHHHT--CCEEEE----SSSCSSSSS-EEECBCH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE----eeccCCCCC-CEEEECh
Confidence 3445567788888999999999877553222 2233334 688876 444332222 4677774
No 75
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=47.71 E-value=48 Score=30.85 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=51.5
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
++||+|++||... ....+.+++.....+.+|.++.--. .+- .+..+...=|-...--...++.+
T Consensus 3 m~ki~vl~sG~g~-----~~~~~l~~l~~~~l~~~I~~Vit~~-----~~~------~v~~~A~~~gIp~~~~~~~~~~~ 66 (212)
T 3av3_A 3 MKRLAVFASGSGT-----NFQAIVDAAKRGDLPARVALLVCDR-----PGA------KVIERAARENVPAFVFSPKDYPS 66 (212)
T ss_dssp CEEEEEECCSSCH-----HHHHHHHHHHTTCCCEEEEEEEESS-----TTC------HHHHHHHHTTCCEEECCGGGSSS
T ss_pred CcEEEEEEECCcH-----HHHHHHHHHHhCCCCCeEEEEEeCC-----CCc------HHHHHHHHcCCCEEEeCcccccc
Confidence 4799999999843 2344556554322245666655210 010 11112112222222112233445
Q ss_pred hHHHH-HHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 166 TEQVN-AALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 166 ~e~~~-~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
.+.++ ...+.+++++.|.+|+. |.+-.-....|..
T Consensus 67 ~~~~~~~~~~~l~~~~~Dliv~a-~y~~il~~~~l~~ 102 (212)
T 3av3_A 67 KAAFESEILRELKGRQIDWIALA-GYMRLIGPTLLSA 102 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEES-SCCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEc-hhhhhCCHHHHhh
Confidence 55554 67889999999976666 5665545555543
No 76
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=47.03 E-value=1.1e+02 Score=28.25 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHh
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKL 114 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~ 114 (494)
.+..+|||++..-..|-...++.|+-+++++
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~ 36 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL 36 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH
Confidence 3456899999877778888888999888764
No 77
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=46.73 E-value=1.6e+02 Score=29.52 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~---~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++.+.++++ +.|++||.=|-|||...+.+-.+.. +.+.+||-.=
T Consensus 70 ~~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTG 122 (334)
T 3nxk_A 70 CDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLVG 122 (334)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEEC
Confidence 577888887777764 7999999999999976544333443 4556777653
No 78
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=45.42 E-value=62 Score=30.35 Aligned_cols=58 Identities=7% Similarity=0.144 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC--CCCCCcCch
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ--FVETNVGFD 235 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~--~ie~S~GFd 235 (494)
+...+.++.+...++||+|+.+.+.+... .+.+.+.+ ++||.+ |+++... .+ .++++|
T Consensus 55 ~~~~~~~~~l~~~~vdGiI~~~~~~~~~~----~~~l~~~~--iPvV~i----~~~~~~~~~~~-~~V~~D 114 (295)
T 3hcw_A 55 DLMDEVYKMIKQRMVDAFILLYSKENDPI----KQMLIDES--MPFIVI----GKPTSDIDHQF-THIDND 114 (295)
T ss_dssp HHHHHHHHHHHTTCCSEEEESCCCTTCHH----HHHHHHTT--CCEEEE----SCCCSSGGGGS-CEEEEC
T ss_pred HHHHHHHHHHHhCCcCEEEEcCcccChHH----HHHHHhCC--CCEEEE----CCCCccccCCc-eEEecC
Confidence 44567788899999999999987654322 23333344 678754 5665543 11 466655
No 79
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=44.17 E-value=1.3e+02 Score=28.67 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=55.9
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+||+++..-.-|-...++.|+-+.+.+. +.++. +..+.
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 101 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA--GYQML---------------------------------IGNSH--- 101 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---
Confidence 34568999998877888888889998887643 33321 11111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+.+...+.++.+...++||+|+.+-+.+.... +.+.+.+ ++||.+
T Consensus 102 ~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 102 YDAGQELQLLRAYLQHRPDGVLITGLSHAEPFE----RILSQHA--LPVVYM 147 (339)
T ss_dssp TCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHH----HHHHHTT--CCEEEE
T ss_pred CChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHH----HHHhcCC--CCEEEE
Confidence 123445677888889999999999876553222 2333344 678866
No 80
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=43.71 E-value=1.1e+02 Score=28.65 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCEEEEEccchhhhhcC---------CeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEec
Q 011084 118 KSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIG 188 (494)
Q Consensus 118 ~~~v~Gf~~G~~GL~~~---------~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIG 188 (494)
...++|.=+|..=|++. ++=.++++..+.|...|- .++-....| +..+++++++.+.+++.+-++++|
T Consensus 24 ~~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~-~i~~~p~eK--D~TD~e~Al~~a~~~g~~~I~i~G 100 (223)
T 3k94_A 24 DVCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFP-DLDVWPAEK--DKTDMEIALDWAVEQTARCIRLFG 100 (223)
T ss_dssp TEEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCT-TCCEECCBT--TBCHHHHHHHHHHTTCCSEEEEES
T ss_pred CCEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCC-eEEECCCcC--CCCHHHHHHHHHHHcCCCEEEEEc
Confidence 35788888888877753 344567777777777653 244322222 345799999999999999999999
Q ss_pred Ccch
Q 011084 189 GVTS 192 (494)
Q Consensus 189 Gd~S 192 (494)
+-|.
T Consensus 101 a~GG 104 (223)
T 3k94_A 101 ATGG 104 (223)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9886
No 81
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=43.33 E-value=80 Score=29.37 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=52.8
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
+||+|+.||.-+ ....++++++....+.+|.++.--. .+. ....+...=|-..+--.+.++.+.
T Consensus 1 ~ri~vl~Sg~gs-----nl~ali~~~~~~~~~~~i~~Vis~~-----~~~------~~~~~A~~~gIp~~~~~~~~~~~r 64 (212)
T 1jkx_A 1 MNIVVLISGNGS-----NLQAIIDACKTNKIKGTVRAVFSNK-----ADA------FGLERARQAGIATHTLIASAFDSR 64 (212)
T ss_dssp CEEEEEESSCCH-----HHHHHHHHHHTTSSSSEEEEEEESC-----TTC------HHHHHHHHTTCEEEECCGGGCSSH
T ss_pred CEEEEEEECCcH-----HHHHHHHHHHcCCCCceEEEEEeCC-----Cch------HHHHHHHHcCCcEEEeCcccccch
Confidence 489999999752 3667777765443356777665211 000 011111112222222222334444
Q ss_pred HHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 167 EQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 167 e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
+.+ +.+.+.|++++.|.+|+. |.+-.-....|..
T Consensus 65 ~~~~~~~~~~l~~~~~Dliv~a-gy~~il~~~~l~~ 99 (212)
T 1jkx_A 65 EAYDRELIHEIDMYAPDVVVLA-GFMRILSPAFVSH 99 (212)
T ss_dssp HHHHHHHHHHHGGGCCSEEEES-SCCSCCCHHHHHH
T ss_pred hhccHHHHHHHHhcCCCEEEEe-ChhhhCCHHHHhh
Confidence 444 457889999999976666 5665555555543
No 82
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=43.28 E-value=36 Score=31.71 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCE-EEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST-LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~-v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
.+..+||+++..-.-|-...++.|+-+++++. +.+ +.- ..+..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~~~- 51 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--GYTALIS---------------------------------FSTNS- 51 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECSSC-
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--CCCEEEE---------------------------------EeCCC-
Confidence 34578999998777777777888888877643 333 211 11111
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC-CCCCCCCCCcCchh
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQFVETNVGFDT 236 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDND-l~~~~ie~S~GFdT 236 (494)
+.+...+.++.+...++||+|+.+ . .+ +.+. ..+++||. +|++ +....+ ++++|-
T Consensus 52 --~~~~~~~~~~~l~~~~vdgiIi~~--~------~~-~~~~--~~~iPvV~----~~~~~~~~~~~--~V~~D~ 107 (277)
T 3hs3_A 52 --DVKKYQNAIINFENNNVDGIITSA--F------TI-PPNF--HLNTPLVM----YDSANINDDIV--RIVSNN 107 (277)
T ss_dssp --CHHHHHHHHHHHHHTTCSEEEEEC--C------CC-CTTC--CCSSCEEE----ESCCCCCSSSE--EEEECH
T ss_pred --ChHHHHHHHHHHHhCCCCEEEEcc--h------HH-HHHH--hCCCCEEE----EcccccCCCCE--EEEECh
Confidence 234456678889999999999998 1 11 1222 23578875 5666 655553 666663
No 83
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=42.75 E-value=71 Score=29.90 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=52.0
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
++||+|+.||+ | +| ...++++.+.-.-..+|.++.- ++- + ..+..+...=|-...--...++.+
T Consensus 2 m~riavl~Sg~---G-sn-l~ali~~~~~~~l~~eI~~Vis-------n~~---~-a~v~~~A~~~gIp~~~~~~~~~~~ 65 (211)
T 3p9x_A 2 MKRVAIFASGS---G-TN-AEAIIQSQKAGQLPCEVALLIT-------DKP---G-AKVVERVKVHEIPVCALDPKTYPS 65 (211)
T ss_dssp -CEEEEECCTT---C-HH-HHHHHHHHHTTCCSSEEEEEEE-------SCS---S-SHHHHHHHTTTCCEEECCGGGSSS
T ss_pred CCEEEEEEeCC---c-hH-HHHHHHHHHcCCCCcEEEEEEE-------CCC---C-cHHHHHHHHcCCCEEEeChhhcCc
Confidence 47999999995 3 33 6677776643333346666552 110 0 011111111122111112223344
Q ss_pred hHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 166 TEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 166 ~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
.+.+ +++++.|++++.|.+|+.| .+-.-....|..
T Consensus 66 r~~~d~~~~~~l~~~~~Dliv~ag-y~~Il~~~~l~~ 101 (211)
T 3p9x_A 66 KEAYEIEVVQQLKEKQIDFVVLAG-YMRLVGPTLLGA 101 (211)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEeC-chhhcCHHHHhh
Confidence 4444 4678999999999777765 565555555654
No 84
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=41.94 E-value=21 Score=33.58 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=58.5
Q ss_pred CceEEEEEecCCCC--CCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 85 PAIRVGIVFCGRQS--PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 85 ~~~~IgIl~sGG~a--PG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
+..+|||++..-.- |=...++.|+-+++++. +.++.-+ +...
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~---------- 50 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTT--QYHLVVT------------------------PHIH---------- 50 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTS--SCEEEEC------------------------CBSS----------
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHc--CCEEEEe------------------------cCCc----------
Confidence 45789999976543 66777778887776432 2222110 0000
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+++....+.+.+...++||+|+.+.+.+.... +.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 51 --~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~----i~~~~~~~~~-~~V~~D~ 111 (288)
T 3gv0_A 51 --AKDSMVPIRYILETGSADGVIISKIEPNDPRV----RFMTERN--MPFVT----HGRSDMGIEH-AFHDFDN 111 (288)
T ss_dssp --GGGTTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHTT--CCEEE----ESCCCSSCCC-EEEEECH
T ss_pred --chhHHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhCC--CCEEE----ECCcCCCCCC-cEEEeCc
Confidence 01122355566788999999999866443222 2333344 68874 5555544332 4667664
No 85
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=41.28 E-value=45 Score=32.42 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=54.1
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+||+++..-.-|-...++.|+-+.+.+. +.++. +..+.
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 109 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--GLQLL---------------------------------LGYTA--- 109 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---
Confidence 34568999997766666667778887776543 23321 11111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+.+...+.++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+
T Consensus 110 ~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~----~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 110 YSPEREEQLVETMLRRRPEAMVLSYDGHTEQTI----RLLQRAS--IPIVEI 155 (355)
T ss_dssp TCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHH----HHHHHCC--SCEEEE
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 123445677888889999999999887664322 2333344 688876
No 86
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=39.22 E-value=23 Score=29.17 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 011084 193 NTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 224 (494)
Q Consensus 193 ~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~ 224 (494)
......|.+.+++.+...-|||.|++.||...
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 34455666666666666778888888887653
No 87
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=39.01 E-value=2.3e+02 Score=26.96 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++..+.+.+.++++++|+++. +-+.....++.+++.+.+.| +++++-
T Consensus 57 ~~~~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g--~~~~~~ 104 (331)
T 2pn1_A 57 EVEYIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG--VTVIVS 104 (331)
T ss_dssp STTHHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT--CEECCC
T ss_pred ChhHHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC--cEEecC
Confidence 3456788899999999998765 33334444555667776544 455543
No 88
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=38.77 E-value=13 Score=26.74 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.1
Q ss_pred hhhhhccChhHHHhhhhcC
Q 011084 363 ASALFEFLPPFIKKQLLLQ 381 (494)
Q Consensus 363 ~~~~f~~lp~~i~~~l~~~ 381 (494)
..++|+.||..||++|+..
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 4579999999999988754
No 89
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=38.21 E-value=1.3e+02 Score=28.21 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=53.2
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
+.+||+++.....|-...++.|+-+.+++. +.++. +..+. .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~l~---------------------------------~~~~~---~~ 43 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLK---------------------------------IADGQ---QK 43 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CC
Confidence 468999998866676777788888777643 22211 11111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~~ 90 (306)
T 2vk2_A 44 QENQIKAVRSFVAQGVDAIFIAPVVATGWE-PVL-KEAKDAE--IPVFLLD 90 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSSSSCH-HHH-HHHHHTT--CCEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhHH-HHH-HHHHHCC--CCEEEec
Confidence 344456678888899999999987654211 112 2233344 6888653
No 90
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=37.87 E-value=1.1e+02 Score=29.22 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=59.8
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+++..-..|-...++.|+-+++++. +.++. +..+. .
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 98 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI---------------------------------LGNAW---N 98 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4468999997665666667778887776542 22221 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+...+.++.+...++||+|+.+.+.+.... +.+.+. .+++||.+=... .......++++|-
T Consensus 99 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~----~~l~~~-~~iPvV~~~~~~----~~~~~~~~V~~D~ 161 (340)
T 1qpz_A 99 NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEY-RHIPMVVMDWGE----AKADFTDAVIDNA 161 (340)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHH----HHHHTT-TTSCEEEEEESS----CCCSSSEEEECCH
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhh-CCCCEEEEeccc----CCCCCCCEEEECH
Confidence 23455667888889999999999877543222 222221 247887664333 2222113677663
No 91
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=37.17 E-value=2.4e+02 Score=27.88 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~----~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+..+ .+.+||-.=
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTG 119 (327)
T 1o7j_A 66 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFVA 119 (327)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEeC
Confidence 577888887777765 79999999999999775443344433 456777653
No 92
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=36.97 E-value=52 Score=30.04 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEe-cCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVII-GGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviI-GGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+++.+.+..+..+..+++.+|.+ ||.+.+-+. ++- ....+|||||-.
T Consensus 52 ~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv--vA~-----~t~~PVIgVPv~ 99 (173)
T 4grd_A 52 MPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM--LAA-----KTTVPVLGVPVA 99 (173)
T ss_dssp SHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH--HHH-----HCCSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEeccccccchhh--hee-----cCCCCEEEEEcC
Confidence 57788888888898999976655 555555443 222 135899999964
No 93
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=36.69 E-value=2.3e+02 Score=28.04 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~----~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ .+.+||-.=
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTG 119 (332)
T 2wlt_A 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLH--STKPVVLVG 119 (332)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHCC--CSSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEEC
Confidence 577888877777765 79999999999999775443344433 456777653
No 94
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=36.37 E-value=66 Score=32.30 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHH----cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKN----LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~----~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++.+.+++ .+.|++||.=|-|||...+.+-.+.. +.+.+||-.=
T Consensus 71 t~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTG 124 (337)
T 4pga_A 71 TNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQ--KTDKPIVVVG 124 (337)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHc--CCCCCEEEeC
Confidence 67888888887777 47999999999999976544333443 4567787663
No 95
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=36.33 E-value=67 Score=30.79 Aligned_cols=94 Identities=26% Similarity=0.208 Sum_probs=60.0
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..||||++.- +-|.++++-.|+.+.+++. | ..+++-++++ +.|..|
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~~-----------G---~~~g~nv~~~------~~~a~g----------- 53 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKAK-----------G---YEEGKNLEFD------YKTAQG----------- 53 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHHT-----------T---CCBTTTEEEE------EEECTT-----------
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHhh-----------C---cccCCcEEEE------EEeCCC-----------
Confidence 456899999874 6799999999999998753 1 1233323332 333333
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+......+++.+...+.|.+|.||.. .+..++.. ..+++||.+-.|
T Consensus 54 -d~~~~~~~~~~l~~~~~DlIiai~t~----aa~a~~~~----~~~iPVVf~~v~ 99 (302)
T 3lkv_A 54 -NPAIAVQIARQFVGENPDVLVGIATP----TAQALVSA----TKTIPIVFTAVT 99 (302)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEESHH----HHHHHHHH----CSSSCEEEEEES
T ss_pred -CHHHHHHHHHHHHhcCCcEEEEcCCH----HHHHHHhh----cCCCCeEEEecC
Confidence 34567788899999999988887632 12223322 235788776544
No 96
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=35.91 E-value=42 Score=30.71 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+++.+.+.+++.++.+++.+|.+-|-.. .=.-.++- ....+|||||-.
T Consensus 47 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~-----~t~~PVIgVP~~ 94 (174)
T 3lp6_A 47 TPEAMFSYARGAAARGLEVIIAGAGGAA-HLPGMVAA-----ATPLPVIGVPVP 94 (174)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEESSC-CHHHHHHH-----HCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCchh-hhHHHHHh-----ccCCCEEEeeCC
Confidence 5788889999999999996666544322 22223332 236899999943
No 97
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=35.86 E-value=1.7e+02 Score=27.63 Aligned_cols=106 Identities=12% Similarity=-0.023 Sum_probs=58.6
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
.++||+++..-..|=...++.|+-+++++.. .++. +...+. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g--~~~~--------------------------------~~~~~~---~d 45 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALG--IDVT--------------------------------YDGPTE---PS 45 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHT--CEEE--------------------------------ECCCSS---CC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhC--CEEE--------------------------------EECCCC---CC
Confidence 3589999876555666667777777665431 1110 111111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc-Cchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV-GFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~-GFdT 236 (494)
.+...+.++.+...++|+||+.+-+.+... ..+ +.+.+.+ ++||.+ |.++.......++ ++|-
T Consensus 46 ~~~q~~~i~~li~~~vdgiii~~~~~~~~~-~~~-~~a~~~g--ipvV~~----d~~~~~~~~~~~v~~~D~ 109 (316)
T 1tjy_A 46 VSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-PAL-KRAMQRG--VKILTW----DSDTKPECRSYYINQGTP 109 (316)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSSSTTH-HHH-HHHHHTT--CEEEEE----SSCCCGGGCSEEEESCCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHCc--CEEEEe----cCCCCCCCceEEEecCCH
Confidence 344556678888899999999887654211 122 2233344 788876 4444322112455 6764
No 98
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=35.65 E-value=61 Score=30.23 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=58.0
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+++..-..|=...++.|+-+++++. +.++. +.....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~--- 48 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--HRHVV---------------------------------VATGCG--- 48 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCCS---
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCCC---
Confidence 4568999997655566667778887776542 22221 101111
Q ss_pred ChHHHHH---HHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 165 TTEQVNA---ALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~---~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+...+ .++.+...++|++|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 49 ~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 112 (290)
T 2rgy_A 49 ESTPREQALEAVRFLIGRDCDGVVVISHDLHDED---L-DELHRMH--PKMVFL----NRAFDALPD-ASFCPDH 112 (290)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---H-HHHHHHC--SSEEEE----SSCCTTSGG-GEECCCH
T ss_pred chhhhhhHHHHHHHHHhcCccEEEEecCCCCHHH---H-HHHhhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 1122334 677888899999999998765222 2 2233334 688876 333332221 4677664
No 99
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=34.78 E-value=1.3e+02 Score=29.66 Aligned_cols=99 Identities=8% Similarity=0.035 Sum_probs=50.4
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
..++||+|+.||. | + ....++++.+.-.-..+|-++.---. +. ..+..-. |-...--..++.
T Consensus 103 ~~~~ri~vl~Sg~---g-~-nl~~ll~~~~~g~l~~~I~~Visn~~-----~~-----~~~A~~~---gIp~~~~~~~~~ 164 (302)
T 3o1l_A 103 AQKKRVVLMASRE---S-H-CLADLLHRWHSDELDCDIACVISNHQ-----DL-----RSMVEWH---DIPYYHVPVDPK 164 (302)
T ss_dssp TSCCEEEEEECSC---C-H-HHHHHHHHHHTTCSCSEEEEEEESSS-----TT-----HHHHHTT---TCCEEECCCCSS
T ss_pred CCCcEEEEEEeCC---c-h-hHHHHHHHHHCCCCCcEEEEEEECcH-----HH-----HHHHHHc---CCCEEEcCCCcC
Confidence 3468999999998 2 3 35666666543223456666542110 11 1111111 211111111222
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
..++.-+++++.|++++.|.+|+.| .+-.-....|..
T Consensus 165 ~r~~~~~~~~~~l~~~~~DliVlag-ym~IL~~~~l~~ 201 (302)
T 3o1l_A 165 DKEPAFAEVSRLVGHHQADVVVLAR-YMQILPPQLCRE 201 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEESS-CCSCCCTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCEEEHhH-hhhhcCHHHHhh
Confidence 2234445788999999999666554 554444444543
No 100
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=34.58 E-value=30 Score=35.49 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
.+.+.+++.++++++|.++ +|..+.. +..+++.+++.| ++++|-
T Consensus 54 ~d~~~l~~~a~~~~id~vv-~g~e~~l--~~~~~~~l~~~G--i~~~Gp 97 (431)
T 3mjf_A 54 TDIAGLLAFAQSHDIGLTI-VGPEAPL--VIGVVDAFRAAG--LAIFGP 97 (431)
T ss_dssp TCHHHHHHHHHHTTEEEEE-ECSHHHH--HTTHHHHHHHTT--CCEESC
T ss_pred CCHHHHHHHHHHhCcCEEE-ECCchHH--HHHHHHHHHhcC--CCeeCC
Confidence 4567778888888888654 4544432 244556666555 456543
No 101
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.24 E-value=79 Score=27.02 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=50.5
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhH-HhcccccCCcccccccCCCCCC
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEI-LSTYKNQGGYDMLGRTKDQIRT 165 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~-v~~~~n~GG~~~lgS~R~k~~~ 165 (494)
.+|-+.+.||+ .|..=.-++..+-+ ..|++|+-. + ...+.++ ++..+.. +.++++.|-..-.+
T Consensus 4 ~~vvla~~~~d---~HdiG~~~v~~~l~-~~G~~Vi~l---------G--~~~p~e~~v~~a~~~-~~d~v~lS~~~~~~ 67 (137)
T 1ccw_A 4 KTIVLGVIGSD---CHAVGNKILDHAFT-NAGFNVVNI---------G--VLSPQELFIKAAIET-KADAILVSSLYGQG 67 (137)
T ss_dssp CEEEEEEETTC---CCCHHHHHHHHHHH-HTTCEEEEE---------E--EEECHHHHHHHHHHH-TCSEEEEEECSSTH
T ss_pred CEEEEEeCCCc---hhHHHHHHHHHHHH-HCCCEEEEC---------C--CCCCHHHHHHHHHhc-CCCEEEEEecCcCc
Confidence 47888888887 34332222222211 236666511 1 2345443 3333333 33577766654445
Q ss_pred hHHHHHHHHHHHHcCC-CEEEEecCcc
Q 011084 166 TEQVNAALTACKNLNL-DGLVIIGGVT 191 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~I-d~LviIGGd~ 191 (494)
.+.+++.++.|++.++ +..|++||.-
T Consensus 68 ~~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 68 EIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp HHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 6678888888888887 6788888854
No 102
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=33.88 E-value=69 Score=29.88 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
|++-++.+++..++++|+.+|+---.|. +|.++.+.+ .| +++|.|.
T Consensus 28 T~~tl~la~era~e~~Ik~iVVAS~sG~--TA~k~~e~~--~~--i~lVvVT 73 (201)
T 1vp8_A 28 TEETLRLAVERAKELGIKHLVVASSYGD--TAMKALEMA--EG--LEVVVVT 73 (201)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSH--HHHHHHHHC--TT--CEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCCh--HHHHHHHHh--cC--CeEEEEe
Confidence 5778999999999999999999877665 778888865 33 7899887
No 103
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.87 E-value=69 Score=28.28 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=57.0
Q ss_pred CceEEEEEecCCCCCCcc-hhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n-~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
++.+|-+.+.||+.--.- ++++.+++. .|++|+- . | ...+.+.+-.....-+.+++|-|-..-
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~-----~G~eVi~-l-G---------~~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRD-----AGFEVVY-T-G---------LRQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHH-----TTCEEEC-C-C---------SBCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHH-----CCCEEEE-C-C---------CCCCHHHHHHHHHhcCCCEEEEEeech
Confidence 456888899999764433 344444432 3666651 1 1 124555433333333446777665444
Q ss_pred CChHHHHHHHHHHHHcCC-CEEEEecCcchH
Q 011084 164 RTTEQVNAALTACKNLNL-DGLVIIGGVTSN 193 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~I-d~LviIGGd~S~ 193 (494)
.+.+.+.+.++.|++.+. +..|++||.-..
T Consensus 81 ~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~ 111 (161)
T 2yxb_A 81 AHLHLMKRLMAKLRELGADDIPVVLGGTIPI 111 (161)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCEEEEECCCH
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Confidence 457788999999999887 688999996543
No 104
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=33.50 E-value=2.4e+02 Score=26.38 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+...+.++.+...++|++|+.+.+.+.. ...+ +.+.+.+ ++||.+ |++.+....-.++++|-
T Consensus 43 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-~~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~ 105 (313)
T 2h3h_A 43 INAQLQMLESFIAEGVNGIAIAPSDPTAV-IPTI-KKALEMG--IPVVTL----DTDSPDSGRYVYIGTDN 105 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSTTTT-HHHH-HHHHHTT--CCEEEE----SSCCTTSCCSCEEECCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChHHH-HHHH-HHHHHCC--CeEEEe----CCCCCCcceeEEECcCH
Confidence 34455667778888999999988765421 1122 2333344 788865 44443211114677664
No 105
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=33.12 E-value=2.4e+02 Score=26.64 Aligned_cols=94 Identities=13% Similarity=-0.032 Sum_probs=54.7
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+++..-..|-...++.|+-+++++.. .++ ++..+. .
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~l---------------------------------~~~~~~---~ 45 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSVG--LPY---------------------------------VPLTTE---G 45 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHHT--CCE---------------------------------EEEECT---T
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHcC--CEE---------------------------------EEecCC---C
Confidence 34689999977666666777788887775431 111 111111 1
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 011084 165 TTEQVNAALTACKNLN--LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 220 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~--Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTID 220 (494)
+.+...+.++.+...+ +|++|+.+.+.+.. ...+ +.+.+.+ ++||.+-...+
T Consensus 46 ~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~-~~~~-~~~~~~~--iPvV~~~~~~~ 99 (332)
T 2rjo_A 46 SSEKGIADIRALLQKTGGNLVLNVDPNDSADA-RVIV-EACSKAG--AYVTTIWNKPK 99 (332)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEECCSSHHHH-HHHH-HHHHHHT--CEEEEESCCCT
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHH-HHHH-HHHHHCC--CeEEEECCCCC
Confidence 2344456677777888 99999998765421 1122 2333334 78887644433
No 106
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=32.99 E-value=1e+02 Score=31.16 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~--~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+..+ +.+.+||-.=.
T Consensus 84 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~-~~~kPVVlTGA 137 (358)
T 2him_A 84 TPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLE-NLGKPVIVTGS 137 (358)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSTTHHHHHHHHHHHEE-TCCSCEEEECC
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHHHHHh-cCCCCEEEeCC
Confidence 578888888887776 89999999999999764443344432 34567776543
No 107
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=32.61 E-value=2.8e+02 Score=25.09 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=53.5
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+|||++..-..|=...++.|+-+++++. +.++.-+ ... .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~---~ 48 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--GYQVLIG---------------------------------NSD---N 48 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--TCCEEEE---------------------------------ECT---T
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---C
Confidence 4568999998766677777788888777643 2222210 011 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH-HHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE-TFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae-~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+...+.++.+...++||+|+.+.+. .. + + .+.+.+ ++||. +|++..... ++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~~dgiIi~~~~~--~~---~-~~~l~~~~--iPvV~----~~~~~~~~~---~V~~D~ 106 (277)
T 3e61_A 49 DIKKAQGYLATFVSHNCTGMISTAFNE--NI---I-ENTLTDHH--IPFVF----IDRINNEHN---GISTNH 106 (277)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECGGGH--HH---H-HHHHHHC---CCEEE----GGGCC------------H
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCh--HH---H-HHHHHcCC--CCEEE----EeccCCCCC---eEEech
Confidence 244556788889999999999998321 11 2 2 343444 67775 455554332 666653
No 108
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.58 E-value=41 Score=31.58 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=58.4
Q ss_pred CceEEEEEec----CCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccC
Q 011084 85 PAIRVGIVFC----GRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 85 ~~~~IgIl~s----GG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
+..+|||++. .-..|=...++.|+-+++.+. +.++.-+ ...
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~ 49 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLI---------------------------------PDE 49 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------EEC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC
Confidence 4568999997 444455566777887776543 3333211 011
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 161 DQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 161 ~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
. . +...+..+.+...++||+|+.+.+.+.... +.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 50 ~-~---~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 110 (294)
T 3qk7_A 50 P-G---EKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQN--FPFLA----LGRSHLPKPY-AWFDFDN 110 (294)
T ss_dssp T-T---CCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHTT--CCEEE----ESCCCCSSCC-EEEEECH
T ss_pred C-h---hhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhCC--CCEEE----ECCCCCCCCC-CEEEcCh
Confidence 1 1 112356777888999999999987654222 2333344 67875 4555443332 4667664
No 109
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=31.89 E-value=36 Score=31.02 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+++.+.+..++.++.+++.+|.+-|- +..=.-.++ -....+|||||-.
T Consensus 51 ~p~~l~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA-----~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 51 TPDYMFEYAETARERGLKVIIAGAGG-AAHLPGMVA-----AKTNLPVIGVPVQ 98 (170)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEES-SCCHHHHHH-----TTCCSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCc-hhhhHHHHH-----hccCCCEEEeeCC
Confidence 57778888888888889865554333 222222333 2457899999964
No 110
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=31.78 E-value=63 Score=29.33 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+++.+.+.+++.++.+++.+|.+-|-.. .=.-.++- ....+|||||-
T Consensus 45 tp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~-----~t~~PVIgVP~ 91 (166)
T 3oow_A 45 TPDKMFDYAETAKERGLKVIIAGAGGAA-HLPGMVAA-----KTTLPVLGVPV 91 (166)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEECSSC-CHHHHHHH-----TCSSCEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCcch-hhHHHHHh-----ccCCCEEEeec
Confidence 5788888888888888987776655432 22223332 34689999994
No 111
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=31.64 E-value=40 Score=30.71 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+++.+.+.+++.++.+++.+|.+-|-. ..=.-.++- ....+|||||-.
T Consensus 46 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 46 TPKETVEFVENADNRGCAVFIAAAGLA-AHLAGTIAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEECSS-CCHHHHHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChh-hhhHHHHHh-----cCCCCEEEeecC
Confidence 578888888989989999666654432 222233332 346899999943
No 112
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=31.61 E-value=76 Score=29.48 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=59.3
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+++..-..|-...++.|+-+++++. +.++. +.... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 48 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--GYRIL---------------------------------LCNTE---S 48 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4568999997655666667778887776542 22211 10111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+...+.++.+...++|++|+.+.+.+.. .+ +.+. . +++||.+ |.+.....+ .++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~--~iPvV~~----~~~~~~~~~-~~V~~D~ 108 (285)
T 3c3k_A 49 DLARSRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-G--AFPWVQC----AEYDPLSTV-SSVSIDD 108 (285)
T ss_dssp CHHHHHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-T--TSSEEEE----SSCCTTSSS-CEEECCH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-c--CCCEEEE----ccccCCCCC-CEEEECh
Confidence 234445667788889999999998765422 22 2333 3 4788876 444332222 4677664
No 113
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.49 E-value=1.8e+02 Score=26.59 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=59.6
Q ss_pred ceEEEEEecCCC--CCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 86 AIRVGIVFCGRQ--SPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 86 ~~~IgIl~sGG~--aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
..+|||++..-. .|-...++.|+-+++++. +.++ .+......
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~---------------------------------~~~~~~~~- 48 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--EIKL---------------------------------EFMAPEKE- 48 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--TCEE---------------------------------EECCCSST-
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--CCEE---------------------------------EEecCCCC-
Confidence 468999987655 566667778887777543 2211 11111001
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+. +++||.+ |.+......-.++++|-
T Consensus 49 ~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-~~~-~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~ 113 (289)
T 3brs_A 49 EDYLVQNELIEEAIKRKPDVILLAAADYEKTY-DAA-KEIKDA--GIKLIVI----DSGMKQDIADITVATDN 113 (289)
T ss_dssp TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-HHH-TTTGGG--TCEEEEE----SSCCSSCCCSEEEECCH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHC--CCcEEEE----CCCCCCCcceEEEeeCh
Confidence 12344556778888899999999987654211 112 223233 4788866 44433221114667664
No 114
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=31.40 E-value=39 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+++.+.+..++.++.+++.+|.+.|-. ..=.-.++- ....+|||||-.
T Consensus 52 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 52 TPDRLFSFAEQAEANGLHVIIAGNGGA-AHLPGMLAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CHHHHHHHHHHTTTTTCSEEEEEEESS-CCHHHHHHH-----TCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChh-hhhHHHHHh-----ccCCCEEEeeCC
Confidence 578888888888888999666554432 222233432 346899999954
No 115
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=31.27 E-value=42 Score=30.41 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-chHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHH
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGV-TSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 243 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd-~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~ 243 (494)
+++.+.+..++.++.+++.+|.+-|- +.+- -.++- ....+|||||-... ++. |
T Consensus 43 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--gvvA~-----~t~~PVIgVP~~~~-~l~--------G---------- 96 (163)
T 3ors_A 43 TPKMMVQFASEARERGINIIIAGAGGAAHLP--GMVAS-----LTTLPVIGVPIETK-SLK--------G---------- 96 (163)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--HHHHH-----HCSSCEEEEEECCT-TTT--------T----------
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCchhhhH--HHHHh-----ccCCCEEEeeCCCC-CCC--------C----------
Confidence 57788888888888889966655443 2222 23332 23689999995432 332 2
Q ss_pred HHHHHHHHHhhccCce--EEEEe---cCCCccHHHHHh
Q 011084 244 LISNVCTDALSAEKYY--YFIRL---MGRRASHVALEC 276 (494)
Q Consensus 244 ~I~nl~~da~S~~k~~--~~Vev---MGR~ag~lAl~~ 276 (494)
++.|..-.+ ++..+ ..|=+ =|.+|+++|...
T Consensus 97 -~dsLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 97 -IDSLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp -HHHHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 234443333 55554 44444 267777777543
No 116
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=30.95 E-value=1.4e+02 Score=27.84 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=49.5
Q ss_pred ceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEcc---chhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLG---GSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 86 ~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~---G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
++||+|+.||.. +| ...++++++...-..+|.++.- ...|+ ....-. |-...--.+..
T Consensus 7 ~~ri~vl~SG~g----sn-l~all~~~~~~~l~~~I~~Visn~~~a~~l-----------~~A~~~---gIp~~~~~~~~ 67 (209)
T 4ds3_A 7 RNRVVIFISGGG----SN-MEALIRAAQAPGFPAEIVAVFSDKAEAGGL-----------AKAEAA---GIATQVFKRKD 67 (209)
T ss_dssp CEEEEEEESSCC----HH-HHHHHHHHTSTTCSEEEEEEEESCTTCTHH-----------HHHHHT---TCCEEECCGGG
T ss_pred CccEEEEEECCc----HH-HHHHHHHHHcCCCCcEEEEEEECCcccHHH-----------HHHHHc---CCCEEEeCccc
Confidence 579999999982 22 4556666543222356666552 11221 111111 21111112223
Q ss_pred CCChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 011084 163 IRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLA 200 (494)
Q Consensus 163 ~~~~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~La 200 (494)
+.+.+.+ +++.+.+++++.|.+|+.| .+-.-....|.
T Consensus 68 ~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~ 105 (209)
T 4ds3_A 68 FASKEAHEDAILAALDVLKPDIICLAG-YMRLLSGRFIA 105 (209)
T ss_dssp SSSHHHHHHHHHHHHHHHCCSEEEESS-CCSCCCHHHHG
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEec-cccCcCHHHHh
Confidence 3344444 4678999999999777765 55444444443
No 117
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=30.74 E-value=2.3e+02 Score=25.82 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=60.2
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+++..-..|-...++.|+-+++++. +.++. +.... .
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 47 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI---------------------------------LGNAW---N 47 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEE---------------------------------EEcCC---C
Confidence 3468999997766676777888888777543 11111 10110 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+...+.++.+...++|++|+.+.+.+..... .+.+. .+++||.+-. +........++++|-
T Consensus 48 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~----~l~~~-~~iPvV~~~~----~~~~~~~~~~V~~d~ 110 (289)
T 1dbq_A 48 NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLA----MLEEY-RHIPMVVMDW----GEAKADFTDAVIDNA 110 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHH----HHHHT-TTSCEEEEEC----SSCCSSSCEEEEECH
T ss_pred ChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHH----HHHhc-cCCCEEEEcc----CCCccCcCCEEEeCc
Confidence 345556678888889999999998876432222 23221 2478887643 333222113677663
No 118
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=30.32 E-value=1.1e+02 Score=31.92 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~---~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+.. +.+.+||-.=
T Consensus 149 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l--~~~KPVVlTG 201 (435)
T 2d6f_A 149 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFML--RTPVPVVFTG 201 (435)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHHHHHHE--ECSSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEcCcchHHHHHHHHHHHh--CCCCCEEEEC
Confidence 577787777777766 8999999999999977544434443 4456777653
No 119
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=30.27 E-value=3.1e+02 Score=26.07 Aligned_cols=30 Identities=10% Similarity=-0.198 Sum_probs=24.1
Q ss_pred ceEEEEEecCCCC-CCcchhHHHHHHHHHhh
Q 011084 86 AIRVGIVFCGRQS-PGGHNVVWGLYDALKLH 115 (494)
Q Consensus 86 ~~~IgIl~sGG~a-PG~n~vI~gl~~~~~~~ 115 (494)
..+||+++.+-.. |=...++.|+-+++++.
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~ 33 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL 33 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc
Confidence 4689999988766 77788889998887654
No 120
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=29.82 E-value=2.6e+02 Score=29.51 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=70.4
Q ss_pred CcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEe------------------------------cCcchHHHHHHHHH
Q 011084 152 GYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII------------------------------GGVTSNTDAAYLAE 201 (494)
Q Consensus 152 G~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviI------------------------------GGd~S~~~A~~Lae 201 (494)
|+ ||-.+|..+ +.+.+++.++.+..++++.|..= ||.=|......|.+
T Consensus 161 G~-mLD~aR~f~-~~~~ik~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~ 238 (512)
T 1jak_A 161 SA-MLDVSRHFF-GVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVR 238 (512)
T ss_dssp EE-EEECSSSCC-CHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHH
T ss_pred ce-eeccCCCCC-CHHHHHHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHH
Confidence 65 899999755 68899999999999999998632 34446777888999
Q ss_pred HHHhcCCCCeEEE---e-----------eeccc-CC-------CC-CCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCc
Q 011084 202 TFAEAKCPTKVVG---V-----------PVTLN-GD-------LK-NQFVETNVGFDTICKVNSQLISNVCTDALSAEKY 258 (494)
Q Consensus 202 ~~~~~~~~i~VIg---V-----------PkTID-ND-------l~-~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~ 258 (494)
|++++| |.||- . |.=-. +. .. +.+ ..+++-+.+.+++.+.++.+. +.... ++
T Consensus 239 yA~~rg--I~VIPEID~PGH~~a~l~aypeL~~~~~~~~~~~~~~~~~~-~l~~~~~~t~~fl~~v~~Ev~-~lFp~-~~ 313 (512)
T 1jak_A 239 YAASRH--LEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFS-SLCVDKDVTYDFVDDVIGELA-ALTPG-RY 313 (512)
T ss_dssp HHHHTT--CEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCC-CCCTTCHHHHHHHHHHHHHHH-HTCCS-SE
T ss_pred HHHHcC--CEEEEccCCCchHHHHHHhCHHhcCcCCCCccccccCcCCc-ccCCCCHHHHHHHHHHHHHHH-HhCCC-Ce
Confidence 999888 45541 1 11100 00 00 001 146777888888888888885 44433 56
Q ss_pred eEEE--Ee
Q 011084 259 YYFI--RL 264 (494)
Q Consensus 259 ~~~V--ev 264 (494)
+|+= |+
T Consensus 314 iHiGgDE~ 321 (512)
T 1jak_A 314 LHIGGDEA 321 (512)
T ss_dssp EECCCCCC
T ss_pred EEECCccc
Confidence 7764 55
No 121
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=29.79 E-value=42 Score=33.23 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=38.0
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch------------HHHHHHHHHHHHhc
Q 011084 158 RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS------------NTDAAYLAETFAEA 206 (494)
Q Consensus 158 S~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S------------~~~A~~Lae~~~~~ 206 (494)
|||. .+.+.++..+..++.+||+.++++.||-. +..|..|-++.++.
T Consensus 79 tc~~--~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~ 137 (310)
T 3apt_A 79 TVAG--QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRER 137 (310)
T ss_dssp ECTT--SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHH
T ss_pred ecCC--CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 4665 46889999999999999999999999932 44688888877765
No 122
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.69 E-value=2e+02 Score=26.69 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=63.9
Q ss_pred CCceEEEEEecCCCCCCcc-hhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n-~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k 162 (494)
.+..+|||++..-.-|-.. .++.|+-+++++. +.++.-+. ..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~-- 53 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--GKTILIAN---------------------------------TG-- 53 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT--
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC--
Confidence 4457899999888778888 8999998888653 33332110 00
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++||+|+.+.+.+. ..+.+.+. +++||.+=..+++.- .+ .++++|-
T Consensus 54 -~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~~--~iPvV~~~~~~~~~~---~~-~~V~~D~ 115 (301)
T 3miz_A 54 -GSSEREVEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGDV--SIPTVMINCRPQTRE---LL-PSIEPDD 115 (301)
T ss_dssp -TCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTTC--CCCEEEEEEECSSTT---SS-CEEEECH
T ss_pred -CChHHHHHHHHHHHhCCCCEEEEecCCccH-----HHHHHHhC--CCCEEEECCCCCCCC---CC-CEEeeCh
Confidence 123455677888999999999999876543 11222223 478876644333220 11 4666664
No 123
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=29.41 E-value=62 Score=32.07 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 221 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDN 221 (494)
...++.+++.|-+ ..|.++||||--|. |..+|.|-+++.+.+.-.|-=+.=||-
T Consensus 196 T~~RQ~av~~la~-~~D~miVVGg~nSS-NT~rL~eia~~~~~~ty~Ie~~~el~~ 249 (297)
T 3dnf_A 196 TSLRQESVKKLAP-EVDVMIIIGGKNSG-NTRRLYYISKELNPNTYHIETAEELQP 249 (297)
T ss_dssp HHHHHHHHHHHGG-GSSEEEEESCTTCH-HHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred HHHHHHHHHHHHh-hCCEEEEECCCCCc-hhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence 3556666666665 59999999997764 446788888877754433433444443
No 124
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=29.33 E-value=79 Score=31.53 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~----~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ .+.+||-.
T Consensus 63 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 115 (331)
T 1agx_A 63 TDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVH--TDKPIVLV 115 (331)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 577888887777765 79999999999999775443344433 45677765
No 125
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=29.16 E-value=1.2e+02 Score=28.85 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |+++.....-.++++|-
T Consensus 48 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 110 (325)
T 2x7x_A 48 NSKQAEDVHYFMDEGVDLLIISANEAAPMT-PIV-EEAYQKG--IPVILV----DRKILSDKYTAYIGADN 110 (325)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSHHHHH-HHH-HHHHHTT--CCEEEE----SSCCSSSCSSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CeEEEe----CCCCCCcceeEEEecCH
Confidence 344556677888899999999987643211 122 3343444 688866 44443221114677664
No 126
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=29.15 E-value=40 Score=30.38 Aligned_cols=57 Identities=7% Similarity=0.120 Sum_probs=31.9
Q ss_pred cCCeeecCHhHHhcccc---cCCcccccccCCCCCChHHHHHHHHHHHH-cCCCEEEEecCcc
Q 011084 133 AQKTLEVTKEILSTYKN---QGGYDMLGRTKDQIRTTEQVNAALTACKN-LNLDGLVIIGGVT 191 (494)
Q Consensus 133 ~~~~ieLt~~~v~~~~n---~GG~~~lgS~R~k~~~~e~~~~~~~~l~~-~~Id~LviIGGd~ 191 (494)
.++..+-+...+..+.. .-|... . ...-.++.+.+.++++.+.+ .+.|.+|+.||-|
T Consensus 19 ~G~i~Dsn~~~l~~~l~~l~~~G~~v-~-~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 19 KGIYEDISGKAIIDYLKDVIITPFEV-E-YRVIPDERDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp HTSSCCHHHHHHHHHHHHHBCSCCEE-E-EEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCeecchHHHHHHHHHHHHhCCCEE-E-EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 34444444444444333 234323 2 22334566777777766655 3789999999864
No 127
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=28.42 E-value=29 Score=30.58 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ 226 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~ 226 (494)
+++.+++.+++.+.+-++||||-.-.+.+..+.+ .+.+--+|..+++|.-.+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~Fp 132 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYYP 132 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEECC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEECC
Confidence 4677888888878888999999777666554332 467888999998886443
No 128
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.40 E-value=1.5e+02 Score=27.20 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=30.5
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEc
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL 125 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~ 125 (494)
+..+|||++..-..|=...++.|+-+++++. +.++.-+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~ 42 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--GYRLSVID 42 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--TCEEEEEC
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 4578999998888888899999999988755 55555443
No 129
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=28.27 E-value=1.6e+02 Score=27.24 Aligned_cols=96 Identities=10% Similarity=0.193 Sum_probs=46.6
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
+||+|+.||.. .....+++++.+.....++.++.--.. +- .+..+...=|-..+--...++.+.
T Consensus 2 ~rI~vl~SG~g-----~~~~~~l~~l~~~~~~~~i~~Vvs~~~-----~~------~~~~~A~~~gIp~~~~~~~~~~~r 65 (216)
T 2ywr_A 2 LKIGVLVSGRG-----SNLQAIIDAIESGKVNASIELVISDNP-----KA------YAIERCKKHNVECKVIQRKEFPSK 65 (216)
T ss_dssp EEEEEEECSCC-----HHHHHHHHHHHTTSSCEEEEEEEESCT-----TC------HHHHHHHHHTCCEEECCGGGSSSH
T ss_pred CEEEEEEeCCc-----HHHHHHHHHHHhCCCCCeEEEEEeCCC-----Ch------HHHHHHHHcCCCEEEeCcccccch
Confidence 69999999975 234455565543221236666652110 00 011111111211221112233344
Q ss_pred HHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHH
Q 011084 167 EQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYL 199 (494)
Q Consensus 167 e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~L 199 (494)
+.+ +.+.+.|++++.|.+|+. |.+-.-....|
T Consensus 66 ~~~~~~~~~~l~~~~~Dliv~a-~y~~il~~~~l 98 (216)
T 2ywr_A 66 KEFEERMALELKKKGVELVVLA-GFMRILSHNFL 98 (216)
T ss_dssp HHHHHHHHHHHHHTTCCEEEES-SCCSCCCHHHH
T ss_pred hhhhHHHHHHHHhcCCCEEEEe-CchhhCCHHHH
Confidence 444 356888999999966655 45544444444
No 130
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=28.10 E-value=94 Score=28.95 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=60.0
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+|||++..-..|-...++.|+-+++++. +.++. +....
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 55 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY--KYNII---------------------------------LSNSD--- 55 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---
Confidence 34568999997666666667778888777542 22211 10111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++|++|+.+.+.+... + +.+.+.+ ++||.+- .+.....+ .++++|-
T Consensus 56 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~~----~~~~~~~~-~~V~~D~ 117 (289)
T 2fep_A 56 QNMEKELHLLNTMLGKQVDGIVFMGGNITDEH---V-AEFKRSP--VPIVLAA----SVEEQEET-PSVAIDY 117 (289)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCHHH---H-HHHHHSS--SCEEEES----CCCTTCCS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCHHH---H-HHHHhcC--CCEEEEc----cccCCCCC-CEEEECc
Confidence 12344556778888999999999987654222 2 2233344 6888763 33332222 4677664
No 131
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.02 E-value=98 Score=29.71 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred CccccccCCCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCccc
Q 011084 76 PDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDM 155 (494)
Q Consensus 76 ~~~~~~~~~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~ 155 (494)
+.+......+..+||+++..-..|-...++.|+-+++.+. +.++.-+...
T Consensus 54 ~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~---------------------------- 103 (333)
T 3jvd_A 54 QLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--GYQMLVAEAN---------------------------- 103 (333)
T ss_dssp ----------CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEEEEECC----------------------------
T ss_pred HHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEEEECCC----------------------------
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCch
Q 011084 156 LGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 235 (494)
Q Consensus 156 lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFd 235 (494)
. .+...+.++.+...++||+|+.+. .+.+.+.+ ++|| ++|++.....+ .++++|
T Consensus 104 --------~-~~~~~~~~~~l~~~~vdGiIi~~~----------~~~~~~~~--iPvV----~~~~~~~~~~~-~~V~~D 157 (333)
T 3jvd_A 104 --------S-VQAQDVVMESLISIQAAGIIHVPV----------VGSIAPEG--IPMV----QLTRGELGPGF-PRVLCD 157 (333)
T ss_dssp --------S-HHHHHHHHHHHHHHTCSEEEECCC----------TTCCC-CC--SCEE----EECC----CCS-CEEEEC
T ss_pred --------C-hHHHHHHHHHHHhCCCCEEEEcch----------HHHHhhCC--CCEE----EECccCCCCCC-CEEEEC
No 132
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=27.99 E-value=1.5e+02 Score=27.51 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=58.0
Q ss_pred EEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcC---------CeeecCHhHHhcccccCCcccccccC
Q 011084 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 90 gIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~---------~~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
.++++||+.|-.- .....++|.=+|..=|++. ++=-++++..+.|...|- .++--..
T Consensus 4 ~~I~~gG~~~~~~-------------~~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~i~~~~~ 69 (218)
T 3ihk_A 4 VALFSGGDLTYFT-------------RDFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAK-KLVMAPA 69 (218)
T ss_dssp EEEECSSCCSCCC-------------CCCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCS-SEEECCS
T ss_pred EEEEECCCCccCc-------------ccCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCC-eEEECCC
Confidence 5677788876321 0135678888888777764 333466777777776643 2433222
Q ss_pred CCCCChHHHHHHHHHHHHc-CCCEEEEecCcch
Q 011084 161 DQIRTTEQVNAALTACKNL-NLDGLVIIGGVTS 192 (494)
Q Consensus 161 ~k~~~~e~~~~~~~~l~~~-~Id~LviIGGd~S 192 (494)
.| +..++++|++.+.++ +.+-++++|+-|.
T Consensus 70 eK--D~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 70 EK--NDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp SC--SSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CC--CCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 22 345789999998887 7999999999886
No 133
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=27.83 E-value=57 Score=32.27 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=41.6
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcc------hHHHHHHHHHHHHhc-CCCCeEEEee
Q 011084 158 RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT------SNTDAAYLAETFAEA-KCPTKVVGVP 216 (494)
Q Consensus 158 S~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~------S~~~A~~Lae~~~~~-~~~i~VIgVP 216 (494)
|||. .+.++++..+..++.+||+.++++.||- ....|..|-++.++. ++.+.|.+-|
T Consensus 90 tc~~--~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 90 TCID--ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp ESTT--SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred ecCC--CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 5665 3678999999999999999999999984 344577787777654 4444444445
No 134
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=27.33 E-value=5.1e+02 Score=27.84 Aligned_cols=86 Identities=14% Similarity=-0.006 Sum_probs=57.8
Q ss_pred CcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcc---------h-----HHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 152 GYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT---------S-----NTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 152 G~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~---------S-----~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
|+ |++.+|..+ +.+.+++.++.+..++++.|..==-|| . ......|.+|++++| |.||-.-
T Consensus 153 G~-mlD~~R~~~-~~~~ik~~id~ma~~KlN~~h~Hl~DDq~~~~~wr~~Yp~~~~~~i~elv~yA~~rg--I~vv~~i- 227 (594)
T 2v5c_A 153 GI-VEGFYGTPW-THQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENK--VDFVFGI- 227 (594)
T ss_dssp EE-ECCCCSSCC-CHHHHHHHHHHHHHTTCCEEEECCTTCGGGTTTTTSCCCGGGHHHHHHHHHHHHHTT--CEEEEEE-
T ss_pred ce-eeeecCCCC-CHHHHHHHHHHHHHhCCcEEEEecccCcccccccCCCCCHHHHHHHHHHHHHHHHCC--cEEEEec-
Confidence 65 899999654 688999999999999999988654343 1 225677888998888 4665211
Q ss_pred cccCCCCCCCCCCCcCchhHHHHHHHHHHHHH
Q 011084 218 TLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249 (494)
Q Consensus 218 TIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~ 249 (494)
.+.++.+++-+.+-+.|..+...+.
T Consensus 228 -------~Pe~d~~~~~~~~~~~~~~l~~k~~ 252 (594)
T 2v5c_A 228 -------SPGIDIRFDGDAGEEDFNHLITKAE 252 (594)
T ss_dssp -------CGGGTCCCSTHHHHHHHHHHHHHHH
T ss_pred -------CCCccccCCCcchHHHHHHHHHHHH
Confidence 1123345555666666666666554
No 135
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=27.08 E-value=92 Score=31.25 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCC
Q 011084 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKC 208 (494)
Q Consensus 166 ~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~ 208 (494)
...++.+++.|.+. .|.++||||--|. |..+|.|-+++.|.
T Consensus 212 T~~RQ~av~~lA~~-vD~miVVGg~nSS-NT~rL~eia~~~g~ 252 (328)
T 3szu_A 212 TTNRQEAVRALAEQ-AEVVLVVGSKNSS-NSNRLAELAQRMGK 252 (328)
T ss_dssp HHHHHHHHHHHHHH-CSEEEEECCTTCH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh-CCEEEEeCCCCCc-hHHHHHHHHHHhCC
Confidence 35666666666664 9999999997764 44678888887774
No 136
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=26.94 E-value=64 Score=31.40 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 169 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 169 ~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
..+.++.+...++||+|+.+-..+......| .+.+ ++||.+ |.+.....+ .++++|-
T Consensus 117 ~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l----~~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 173 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIYSVAKGDPHIDAI----RARG--LPAVIA----DQPAREEGM-PFIAPNN 173 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEESCCTTCHHHHHH----HHHT--CCEEEE----SSCCSCTTC-CEEEECH
T ss_pred HHHHHHHHHhCCCCEEEEecCCCChHHHHHH----HHCC--CCEEEE----CCccCCCCC-CEEEeCh
Confidence 3466888999999999999864443322333 3334 688854 554433332 4666663
No 137
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=26.77 E-value=1.3e+02 Score=29.93 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~--~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++. .+.+.+||-.=
T Consensus 56 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~ll-~~~~kPVVlTG 108 (328)
T 1wls_A 56 QPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFML-RNPPIPIVLTG 108 (328)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHHHHHHHHE-ESCSSEEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHHHHHHHHH-hCCCCCEEEEC
Confidence 678888888888876 8999999999999977544333322 24567888654
No 138
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=26.64 E-value=40 Score=31.06 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-chHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGV-TSNTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd-~S~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
+++.+.+..++.++.+++.+|.+-|- +.+-+ .++- ....+|||||-..
T Consensus 53 ~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 53 TPDRMFEYAKNAEERGIEVIIAGAGGAAHLPG--MVAS-----ITHLPVIGVPVKT 101 (183)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--HHHH-----HCSSCEEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCcccccHH--HHHh-----ccCCCEEEeeCCC
Confidence 57788888888888899966555433 33332 3332 2368999999654
No 139
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=26.54 E-value=44 Score=29.18 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCCCeEEEeeecccCCC
Q 011084 196 AAYLAETFAEAKCPTKVVGVPVTLNGDL 223 (494)
Q Consensus 196 A~~Lae~~~~~~~~i~VIgVPkTIDNDl 223 (494)
...|.+.+.+.+...-|||.|++.||..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 69 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTE 69 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCB
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCc
Confidence 3455555666677788999999999854
No 140
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.18 E-value=3.7e+02 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=19.2
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCeE
Q 011084 188 GGVTSNTDAAYLAETFAEAKCPTKV 212 (494)
Q Consensus 188 GGd~S~~~A~~Lae~~~~~~~~i~V 212 (494)
||.|--+.|..||.++.++|.++-+
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~Vll 36 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLGHDVTI 36 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 6888888889999988887764433
No 141
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=26.00 E-value=1.7e+02 Score=27.78 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=51.8
Q ss_pred EEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChH
Q 011084 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 167 (494)
Q Consensus 88 ~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e 167 (494)
.|||.=|| -|+-+|.+.+.+. .|+..++-|-+-- .--|-+-+++.+ .+
T Consensus 5 ~IgvfDSG---vGGltv~~~i~~~----lP~~~~iy~~D~~----~~Pyg~~s~~~i---------------------~~ 52 (267)
T 2gzm_A 5 AIGVIDSG---VGGLTVAKELIRQ----LPKERIIYLGDTA----RCPYGPRSREEV---------------------RQ 52 (267)
T ss_dssp CEEEEESS---STTHHHHHHHHHH----CTTSCEEEEECTT----TCCCTTSCHHHH---------------------HH
T ss_pred cEEEEeCC---ccHHHHHHHHHHH----CCCCCEEEecCCC----CCCCCCCCHHHH---------------------HH
Confidence 69999998 6788888777754 4554444333210 001111122221 12
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 168 ~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
...++++.|.+.+.|++|+-....|......|.+ .++++|||+
T Consensus 53 ~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~-----~~~iPvigi 95 (267)
T 2gzm_A 53 FTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQK-----QLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHH-----HCSSCEEES
T ss_pred HHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHH-----hCCCCEEee
Confidence 3556778888999999887655444222333333 246899996
No 142
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.96 E-value=2.1e+02 Score=27.51 Aligned_cols=103 Identities=11% Similarity=0.124 Sum_probs=56.6
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+++..-..|-...++.|+-+.+.+. +.++ ++.... .
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~---------------------------------~~~~~~---~ 106 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA--GLAT---------------------------------IITNSN---E 106 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT--TCCE---------------------------------EEEECT---T
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEE---------------------------------EEEeCC---C
Confidence 3468999997655555566777777766532 1111 111111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCC-CCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN-QFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~-~~ie~S~GFdT 236 (494)
+.+...+.++.+...++|++|+.+.+.+.. .+ +.+.+.+ ++||.+= .+... ..+ .++++|-
T Consensus 107 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~~~~--iPvV~i~----~~~~~~~~~-~~V~~D~ 168 (348)
T 3bil_A 107 DATTMSGSLEFLTSHGVDGIICVPNEECAN---QL-EDLQKQG--MPVVLVD----RELPGDSTI-PTATSNP 168 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEECCCGGGHH---HH-HHHHHC---CCEEEES----SCCSCC-CC-CEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHHhCC--CCEEEEc----ccCCCCCCC-CEEEeCh
Confidence 234455677888889999999998876532 22 2333344 6787663 33332 121 4666664
No 143
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=25.95 E-value=75 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHc-CCCEEEEecCcch
Q 011084 164 RTTEQVNAALTACKNL-NLDGLVIIGGVTS 192 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~-~Id~LviIGGd~S 192 (494)
++.+.+.++++...+. +.|.+|+.||-|-
T Consensus 52 Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 52 ENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp SCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 4566777777666554 6899999998754
No 144
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=25.82 E-value=2.6e+02 Score=27.18 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
..++||+|+.||. ++ ....++++.+.-.-..++..+.- ++. ..+..+...=|-...--.+++
T Consensus 87 ~~~~ri~vl~Sg~----g~-nl~~ll~~~~~g~l~~~i~~Vis-------n~p-----~~~~~~A~~~gIp~~~~~~~~- 148 (288)
T 3obi_A 87 ETRRKVMLLVSQS----DH-CLADILYRWRVGDLHMIPTAIVS-------NHP-----RETFSGFDFGDIPFYHFPVNK- 148 (288)
T ss_dssp TSCEEEEEEECSC----CH-HHHHHHHHHHTTSSCEEEEEEEE-------SSC-----GGGSCCTTTTTCCEEECCCCT-
T ss_pred CCCcEEEEEEcCC----CC-CHHHHHHHHHCCCCCeEEEEEEc-------CCC-----hhHHHHHHHcCCCEEEeCCCc-
Confidence 3478999999998 23 34556665543222345655542 110 011111112221111111111
Q ss_pred CChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 164 RTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 164 ~~~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
.+.+.+ +++++.|++++.|.+|+. |.+-.-....|..
T Consensus 149 ~~r~~~~~~~~~~l~~~~~Dlivla-gy~~il~~~~l~~ 186 (288)
T 3obi_A 149 DTRRQQEAAITALIAQTHTDLVVLA-RYMQILSDEMSAR 186 (288)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEES-SCCSCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEhh-hhhhhCCHHHHhh
Confidence 233333 467899999999966555 5665555555544
No 145
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=25.76 E-value=2e+02 Score=25.95 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=51.2
Q ss_pred HHHHHHHHhhCC--CCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHHHHHHHHHHHc-CCC
Q 011084 106 WGLYDALKLHNP--KSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL-NLD 182 (494)
Q Consensus 106 ~gl~~~~~~~~~--~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~-~Id 182 (494)
+-+.+++.+..+ +.+=+++..|..+.... .+-.....+.+...+|..+..........++.++.+.+.|+++ +++
T Consensus 112 ~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~--~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (276)
T 3ksm_A 112 QLAARALLATLDLSKERNIALLRLRAGNAST--DQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTID 189 (276)
T ss_dssp HHHHHHHHHHSCTTSCEEEEECBCCTTCHHH--HHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCCchhH--HHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCce
Confidence 445666665545 78888898875432110 0000112222333345433321122233345566666777776 688
Q ss_pred EEEEecCcchHHHHHHHHHHHHhcCC--CCeEEEe
Q 011084 183 GLVIIGGVTSNTDAAYLAETFAEAKC--PTKVVGV 215 (494)
Q Consensus 183 ~LviIGGd~S~~~A~~Lae~~~~~~~--~i~VIgV 215 (494)
++++. +|.+ |.-+.+.+++.|. ++.|+|.
T Consensus 190 ai~~~--~d~~--a~g~~~al~~~g~p~di~vig~ 220 (276)
T 3ksm_A 190 GLFTP--NEST--TIGALVAIRQSGMSKQFGFIGF 220 (276)
T ss_dssp EEECC--SHHH--HHHHHHHHHHTTCTTSSEEEEE
T ss_pred EEEEC--Cchh--hhHHHHHHHHcCCCCCeEEEEe
Confidence 87654 4432 2223345555664 4566653
No 146
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.74 E-value=81 Score=29.61 Aligned_cols=104 Identities=14% Similarity=0.250 Sum_probs=61.0
Q ss_pred CCceEEEEEecC-----CCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccc
Q 011084 84 HPAIRVGIVFCG-----RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR 158 (494)
Q Consensus 84 ~~~~~IgIl~sG-----G~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS 158 (494)
.+..+|||++.. -.-|=...++.|+-+++++. +.++. +..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~ 64 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--GYSTR---------------------------------MTV 64 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------ECC
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEe
Confidence 345789999877 45556667777877777543 22221 101
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 159 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 159 ~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.. .+.+...+.++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+ |++.....+ .++++|-
T Consensus 65 ~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 128 (305)
T 3huu_A 65 SE---NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIE----HLLNEFK--VPYLIV----GKSLNYENI-IHIDNDN 128 (305)
T ss_dssp CS---SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHH----HHHHHTT--CCEEEE----SCCCSSTTC-CEEECCH
T ss_pred CC---CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHH----HHHHHcC--CCEEEE----CCCCcccCC-cEEEeCH
Confidence 10 123445678888999999999999887653222 3333344 688754 454422211 4666663
No 147
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=25.62 E-value=51 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCcchh
Q 011084 303 KQICDAVQARAEQDKNHGVILLPEGLIESIPE 334 (494)
Q Consensus 303 ~~i~~~i~~R~~~gk~~gvVlv~EGl~~~~~~ 334 (494)
+++.+.+++-+ +.++||||+|.|.+.+.+++
T Consensus 39 ee~~~~~~~l~-~~~digIIlIte~ia~~i~~ 69 (102)
T 2i4r_A 39 EEIVKAVEDVL-KRDDVGVVIMKQEYLKKLPP 69 (102)
T ss_dssp HHHHHHHHHHH-HCSSEEEEEEEGGGSTTSCH
T ss_pred HHHHHHHHHHh-hCCCeEEEEEeHHHHHHHHH
Confidence 34455554433 46799999999999988774
No 148
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=25.34 E-value=3.2e+02 Score=27.41 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=73.0
Q ss_pred HHhcccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch---HHHHHHHHHHHHhcCCCCeEEEeeecc
Q 011084 143 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS---NTDAAYLAETFAEAKCPTKVVGVPVTL 219 (494)
Q Consensus 143 ~v~~~~n~GG~~~lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S---~~~A~~Lae~~~~~~~~i~VIgVPkTI 219 (494)
++.......|..+++.+... ++ +.-.....++.....+++.|=|-+ .+.+..|.+.++++|+++..++-.-|.
T Consensus 135 el~~~A~~~Gv~i~dvr~~p-~~---l~v~~g~i~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg 210 (350)
T 2g0t_A 135 EFLKIAHENGTRIIDIRIPP-LE---LDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTG 210 (350)
T ss_dssp HHHHHHHHHTCCEEESSSCC-SS---CCCCCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHH
T ss_pred HHHHHHHHCCCEEEEeCcCC-Cc---ccccccceeeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCcee
Confidence 34444445454477665433 11 110112234446667888886644 777888889999999877777655442
Q ss_pred c---CCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHhhccCceEEEEecCCC--ccHHHHHhhh--hcCCcEEEe
Q 011084 220 N---GDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRR--ASHVALECTL--QSHPNMVIL 287 (494)
Q Consensus 220 D---NDl~~~~ie~S~GFdTA~~~~~~~I~nl~~da~S~~k~~~~VevMGR~--ag~lAl~~aL--at~p~~ilI 287 (494)
. .|..... ..+-+|-++- .+..+..+....+..|.+||-.|.- ..+.....++ ...|+.+++
T Consensus 211 ~li~~~~gv~~--D~~~~~~~ag----~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 211 ILIGADAGYVI--DAVPADFVSG----VVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp HHTTCSEECCG--GGSBGGGHHH----HHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred eeeccCCCCCC--CceecchhhH----HHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 2 3322111 1344443333 3333434443334568999998753 3444333333 346888777
No 149
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=25.17 E-value=1.3e+02 Score=27.70 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=58.6
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
.+|||++..-..|-...++.|+-+++++. +.++. +.... .+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 44 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--GYEAT---------------------------------IFDSQ---NDT 44 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---TCH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CCH
Confidence 58999997766666777788888777542 22111 11111 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCC-cCchh
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETN-VGFDT 236 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S-~GFdT 236 (494)
+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |++........+ +++|.
T Consensus 45 ~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~~V~~D~ 107 (290)
T 2fn9_A 45 AKESAHFDAIIAAGYDAIIFNPTDADGSI-ANV-KRAKEAG--IPVFCV----DRGINARGLAVAQIYSDN 107 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSCSSSSSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCChHHHH-HHH-HHHHHCC--CeEEEE----ecCCCCCCceEEEEeCCH
Confidence 44456677788889999999987654211 122 2333344 688865 333332211134 77764
No 150
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=25.02 E-value=1.5e+02 Score=22.38 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHcCCC---------EEEEecCcchHHHHHHHHHHHHhcCCC
Q 011084 164 RTTEQVNAALTACKNLNLD---------GLVIIGGVTSNTDAAYLAETFAEAKCP 209 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id---------~LviIGGd~S~~~A~~Lae~~~~~~~~ 209 (494)
.+.+.-++..+.|++.+++ +-|.+|...+-..|..+.+.+++.|++
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 3567778888888888877 457788888888898888888877764
No 151
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=24.88 E-value=1.4e+02 Score=28.39 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=59.3
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+..+||+++..-..|-...++.|+-+++.+. +.++. +.... .
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 103 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY--KYNMI---------------------------------LANSD---N 103 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEECC---C
Confidence 4568999997666666667778887776542 22211 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+.+.....++.+...++||+|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 104 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 164 (332)
T 2o20_A 104 DVEKEEKVLETFLSKQVDGIVYMGSSLDEKI---R-TSLKNSR--TPVVLV----GTIDGDKEI-PSVNIDY 164 (332)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECSSCCCHHH---H-HHHHHHC--CCEEEE----SCCCTTSCS-CEEECCH
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCCCCHHH---H-HHHHhCC--CCEEEE----ccccCCCCC-CEEEeCh
Confidence 2344556778888899999999987554322 2 2233334 678866 333332222 4666663
No 152
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=24.78 E-value=88 Score=31.17 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 011084 165 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 215 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~----~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgV 215 (494)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+..+ .+.+||-.
T Consensus 64 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 116 (330)
T 1wsa_A 64 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVK--SQKPVVLV 116 (330)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEcCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 577787777777765 79999999999999775443344433 45677765
No 153
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=24.50 E-value=47 Score=30.60 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-chHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGV-TSNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd-~S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+++.+.+..+..++.+++.+|.+-|- +.+- -.++- ....+|||||-.
T Consensus 61 ~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--gvvA~-----~t~~PVIgVP~~ 108 (182)
T 1u11_A 61 TPDRLADYARTAAERGLNVIIAGAGGAAHLP--GMCAA-----WTRLPVLGVPVE 108 (182)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--HHHHH-----HCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCchhhhH--HHHHh-----ccCCCEEEeeCC
Confidence 57778888888888889965555333 3332 33332 236899999964
No 154
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=24.44 E-value=55 Score=30.12 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-chHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGV-TSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd-~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+++.+.+.++..++.+++.+|.+=|- .-+-+ .++ .....+|||||-
T Consensus 62 tp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG--vvA-----a~T~~PVIGVPv 108 (181)
T 4b4k_A 62 TPDYMFEYAETARERGLKVIIAGAGGAAHLPG--MVA-----AKTNLPVIGVPV 108 (181)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--HHH-----TTCCSCEEEEEC
T ss_pred ChHHHHHHHHHHHhcCceEEEEeccccccchh--hHH-----hcCCCCEEEEec
Confidence 57778888888888898876655443 22322 222 245689999995
No 155
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.69 E-value=1.9e+02 Score=25.13 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
++++++++++.+.+. +-++++|--.|...|..++..+...| .++..++
T Consensus 25 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~~~g--~~~~~~~ 72 (187)
T 3sho_A 25 QPEAIEAAVEAICRA--DHVIVVGMGFSAAVAVFLGHGLNSLG--IRTTVLT 72 (187)
T ss_dssp CHHHHHHHHHHHHHC--SEEEEECCGGGHHHHHHHHHHHHHTT--CCEEEEC
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCchHHHHHHHHHHHHhcC--CCEEEec
Confidence 578899999999876 58999998889888888888887655 4565554
No 156
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=23.62 E-value=91 Score=28.04 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHHc-CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 165 TTEQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~-~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+++.+.+..++.++. +++.+|.+-|-.. .=.-.++- ....+|||||-
T Consensus 42 ~p~~~~~~~~~a~~~~~~~ViIa~AG~aa-~LpgvvA~-----~t~~PVIgVP~ 89 (159)
T 3rg8_A 42 TAEHVVSMLKEYEALDRPKLYITIAGRSN-ALSGFVDG-----FVKGATIACPP 89 (159)
T ss_dssp CHHHHHHHHHHHHTSCSCEEEEEECCSSC-CHHHHHHH-----HSSSCEEECCC
T ss_pred CHHHHHHHHHHhhhcCCCcEEEEECCchh-hhHHHHHh-----ccCCCEEEeeC
Confidence 577788888888775 5887777755432 12223332 23589999994
No 157
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.20 E-value=1.5e+02 Score=28.68 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCC-----EEEEecCcc--hHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 167 EQVNAALTACKNLNLD-----GLVIIGGVT--SNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id-----~LviIGGd~--S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
..++.+...++...-. -++++||+. +-.....|++.++++|+.+.|||+=
T Consensus 89 ~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 5678888888754333 356667753 4566788889899999888888875
No 158
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=23.03 E-value=1.1e+02 Score=30.21 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEeC
Q 011084 251 DALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 288 (494)
Q Consensus 251 da~S~~k~~~~VevMGR-~ag~lAl~~aLat~p~~ilIp 288 (494)
......+.+.||=+||- |.||++|--.-....|.++++
T Consensus 19 ~~r~~g~~IgfVPTMG~LH~GHlsLv~~Ar~~~d~vVVS 57 (287)
T 3q12_A 19 RWRQEGKRIALVPTMGNLHEGHMTLVDEAKTRADVVVVT 57 (287)
T ss_dssp HHHHTTCCEEEEEECSSCCHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHcCCeEEEEcCCCcccHHHHHHHHHHHHhCCEEEEE
Confidence 34445677999999996 789999876666677877775
No 159
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=22.13 E-value=94 Score=29.08 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 216 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVP 216 (494)
|++-++.+++..++++|+.+|+---.|. +|.++.+.+ .+ ++|.|.
T Consensus 36 T~~tl~la~era~e~~Ik~iVVASssG~--TA~k~~e~~--~~---~lVvVT 80 (206)
T 1t57_A 36 TERVLELVGERADQLGIRNFVVASVSGE--TALRLSEMV--EG---NIVSVT 80 (206)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSH--HHHHHHTTC--CS---EEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCCH--HHHHHHHHc--cC---CEEEEe
Confidence 5788999999999999999999877665 778787754 22 788887
No 160
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=22.11 E-value=2.7e+02 Score=25.88 Aligned_cols=96 Identities=8% Similarity=0.154 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEcc---chhhhhcCCeeecCHhHHhcccccCCcccccccCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLG---GSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 161 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~---G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~ 161 (494)
.++||+|+.||. ++ -...++++.+.. .+.+|.++.- ...|+ ....-. |-...--.+.
T Consensus 4 ~~~riavl~SG~----Gs-nl~all~~~~~~-~~~eI~~Vis~~~~a~~~-----------~~A~~~---gIp~~~~~~~ 63 (215)
T 3tqr_A 4 EPLPIVVLISGN----GT-NLQAIIGAIQKG-LAIEIRAVISNRADAYGL-----------KRAQQA---DIPTHIIPHE 63 (215)
T ss_dssp CCEEEEEEESSC----CH-HHHHHHHHHHTT-CSEEEEEEEESCTTCHHH-----------HHHHHT---TCCEEECCGG
T ss_pred CCcEEEEEEeCC----cH-HHHHHHHHHHcC-CCCEEEEEEeCCcchHHH-----------HHHHHc---CCCEEEeCcc
Confidence 468999999986 22 234455555432 3456766552 12221 111111 2111111122
Q ss_pred CCCChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 011084 162 QIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201 (494)
Q Consensus 162 k~~~~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae 201 (494)
.+.+.+.+ +++.+.+++++.|.+|+.| .+-.-....|..
T Consensus 64 ~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~~ 103 (215)
T 3tqr_A 64 EFPSRTDFESTLQKTIDHYDPKLIVLAG-FMRKLGKAFVSH 103 (215)
T ss_dssp GSSSHHHHHHHHHHHHHTTCCSEEEESS-CCSCCCHHHHHH
T ss_pred ccCchhHhHHHHHHHHHhcCCCEEEEcc-chhhCCHHHHhh
Confidence 23333333 4678999999999776665 555444455543
No 161
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=22.09 E-value=4.9e+02 Score=24.32 Aligned_cols=102 Identities=11% Similarity=0.165 Sum_probs=61.3
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCe---------eecCHhHHhcccccCCccccc
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT---------LEVTKEILSTYKNQGGYDMLG 157 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~---------ieLt~~~v~~~~n~GG~~~lg 157 (494)
++ ++|++||+.|= .....-+. +. ...++|.=+|..=|++..+ =-++++.++.|.. ++-
T Consensus 32 ~~-v~Iv~~G~~~~-~~~~~~~~---~~---~~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~-----~i~ 98 (231)
T 2omk_A 32 PQ-AIILANGEYPA-HELPLRLL---AE---AQFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS-----IIL 98 (231)
T ss_dssp CS-EEEECSSSCCC-SHHHHHHH---HH---CSCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG-----GEE
T ss_pred CE-EEEEECCCCch-hHHHHHHH---hc---CCEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC-----EEE
Confidence 44 56667887762 22222222 21 2368999999988887532 2345555555551 211
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch-----HHHHHHHHHHH
Q 011084 158 RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS-----NTDAAYLAETF 203 (494)
Q Consensus 158 S~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S-----~~~A~~Lae~~ 203 (494)
...-++..+.++|+..+.+++.+-++++|+.|. +.+...|..+.
T Consensus 99 --~~~~kD~TD~e~Al~~a~~~g~~~I~i~Ga~GgRlDH~laNi~lL~~~~ 147 (231)
T 2omk_A 99 --QISDQETNDQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEYM 147 (231)
T ss_dssp --CCCSSCCCHHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHHHHHH
T ss_pred --eCCCCCCCHHHHHHHHHHHcCCCEEEEECccCCchhHHHHHHHHHHHHH
Confidence 111123457999999999999999999999665 66666666553
No 162
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=21.69 E-value=1.2e+02 Score=28.42 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=59.3
Q ss_pred EEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCC---------eeecCHhHHhcccccCCcccccccC
Q 011084 90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---------TLEVTKEILSTYKNQGGYDMLGRTK 160 (494)
Q Consensus 90 gIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~---------~ieLt~~~v~~~~n~GG~~~lgS~R 160 (494)
+++++||+.|-.... .. .....++|.=+|..=|++.. +=.++++.++.|...|=- ++--..
T Consensus 4 ~~I~~gG~~~~~~~~------~~---~~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~-~~~~~~ 73 (222)
T 3mel_A 4 VLLVAGGNPSDWPTI------EP---ATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTET-LIQAPA 73 (222)
T ss_dssp EEEECSSCGGGCCCC------CG---GGCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSS-EEECCS
T ss_pred EEEEECCCCccchhH------Hh---hcCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCc-EEECCc
Confidence 567778887632210 11 12356889999988888643 333556677777766532 332222
Q ss_pred CCCCChHHHHHHHHHHHHcCCC-EEEEecCcch
Q 011084 161 DQIRTTEQVNAALTACKNLNLD-GLVIIGGVTS 192 (494)
Q Consensus 161 ~k~~~~e~~~~~~~~l~~~~Id-~LviIGGd~S 192 (494)
. ++..+++++++.+.+++-+ -++++|+.|.
T Consensus 74 e--KD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 74 E--KDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp S--CSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred c--CCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 2 2455799999999999887 9999999885
No 163
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.27 E-value=38 Score=29.97 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHHHHHHH-HcCCCEEEEecCcchHHHHHHHHHHHHhc-CCCCeEEEeeecc
Q 011084 168 QVNAALTACK-NLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTL 219 (494)
Q Consensus 168 ~~~~~~~~l~-~~~Id~LviIGGd~S~~~A~~Lae~~~~~-~~~i~VIgVPkTI 219 (494)
+..-+++.+. ...+|.+|++-||+-++-+. +.++++ |..+-|+|.|+..
T Consensus 95 Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 95 DVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGS
T ss_pred cHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcC
Confidence 3444444332 25699999999999877654 445554 8777788877543
No 164
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.21 E-value=1.8e+02 Score=27.58 Aligned_cols=92 Identities=13% Similarity=-0.000 Sum_probs=56.3
Q ss_pred CceEEEEEecCCCCCCcchhH-HHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHH-hcccccCCcccccccCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVV-WGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEIL-STYKNQGGYDMLGRTKDQ 162 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI-~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v-~~~~n~GG~~~lgS~R~k 162 (494)
...+|-+.+.+|+.=-+..-+ +.+++ ..|++|+-. | ...+.+.+ +..... +.+++|-|-..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~-----~~G~~Vi~L--G---------~~vp~e~l~~~~~~~-~~d~V~lS~l~ 184 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLR-----ANGYNVVDL--G---------RDVPAEEVLAAVQKE-KPIMLTGTALM 184 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHH-----HTTCEEEEE--E---------EECCSHHHHHHHHHH-CCSEEEEECCC
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHH-----HCCCEEEEC--C---------CCCCHHHHHHHHHHc-CCCEEEEEeec
Confidence 456899999999864443333 33332 236666311 1 13344433 333333 33567665544
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchH
Q 011084 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSN 193 (494)
Q Consensus 163 ~~~~e~~~~~~~~l~~~~Id~LviIGGd~S~ 193 (494)
..+...+.+.++.|++.+.+.-|++||....
T Consensus 185 ~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~ 215 (258)
T 2i2x_B 185 TTTMYAFKEVNDMLLENGIKIPFACGGGAVN 215 (258)
T ss_dssp TTTTTHHHHHHHHHHTTTCCCCEEEESTTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCcEEEECccCC
Confidence 3456688999999999999999999998764
No 165
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.21 E-value=3e+02 Score=24.97 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=58.6
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
++||+++..-..|-...++.|+-+.+++. +.+++ +..+. .+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 43 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLV---------------------------------VLDSQ---NNP 43 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TCH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHc--CcEEE---------------------------------EeCCC---CCH
Confidence 57999987666666667778887777543 22221 11111 122
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+...+.++.+...++||+|+.+.+..... ..+ +.+.+.+ ++||.+ |++........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~ 105 (271)
T 2dri_A 44 AKELANVQDLTVRGTKILLINPTDSDAVG-NAV-KMANQAN--IPVITL----DRQATKGEVVSHIASDN 105 (271)
T ss_dssp HHHHHHHHHHTTTTEEEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChHHHH-HHH-HHHHHCC--CcEEEe----cCCCCCCceeEEEecCh
Confidence 33455677888899999999876543211 112 2333344 678764 55544322213677764
No 166
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=21.11 E-value=1.2e+02 Score=23.19 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHcCCC---------EEEEecCcchHHHHHHHHHHHHhcCCCCe
Q 011084 164 RTTEQVNAALTACKNLNLD---------GLVIIGGVTSNTDAAYLAETFAEAKCPTK 211 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id---------~LviIGGd~S~~~A~~Lae~~~~~~~~i~ 211 (494)
.++++-++..+.|+..++. +-|.+|...|-..|..+.+.+++.|++..
T Consensus 18 ~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 18 RGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 3567778888888888877 45788888888888888888877776443
No 167
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.84 E-value=1.6e+02 Score=27.12 Aligned_cols=104 Identities=11% Similarity=0.085 Sum_probs=57.1
Q ss_pred eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084 87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 166 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~ 166 (494)
.+|||++..-..|-...++.|+-+.+++. +.++ ++..+.. +.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~---------------------------------~~~~~~~---~~ 43 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL--GYKI---------------------------------IVEDSQN---DS 43 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEE---------------------------------EEEECTT---CH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc--CcEE---------------------------------EEecCCC---CH
Confidence 47999987666666667778887776543 2111 1111111 23
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
+...+.++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+ |++........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 105 (283)
T 2ioy_A 44 SKELSNVEDLIQQKVDVLLINPVDSDAVV-TAI-KEANSKN--IPVITI----DRSANGGDVVCHIASDN 105 (283)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhhH-HHH-HHHHHCC--CeEEEe----cCCCCCcceeEEEecCh
Confidence 33455677788899999999876543211 122 2333344 677765 54443221114677663
No 168
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=20.44 E-value=1.3e+02 Score=29.62 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEeC
Q 011084 251 DALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 288 (494)
Q Consensus 251 da~S~~k~~~~VevMGR-~ag~lAl~~aLat~p~~ilIp 288 (494)
......+.+.||=+||- |.||++|--.-.. .|.++++
T Consensus 19 ~~~~~g~~Ig~VPTMGaLH~GHlsLv~~Ar~-~d~VVVS 56 (285)
T 3mxt_A 19 DWKSHQLSIGYVPTMGFLHDGHLSLVKHAKT-QDKVIVS 56 (285)
T ss_dssp HHHHTTCCEEEEEECSSCCHHHHHHHHHHTT-SSEEEEE
T ss_pred HHHHcCCeEEEEcCCCcccHHHHHHHHHHHh-CCEEEEE
Confidence 33445677999999996 8999998655544 7877763
No 169
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.37 E-value=87 Score=29.13 Aligned_cols=105 Identities=11% Similarity=0.185 Sum_probs=60.8
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
.+..+||+++.....|=...++.|+-+.+++. +.++. +....
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~--- 59 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--GYQLL---------------------------------IACSE--- 59 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEcCC---
Confidence 34578999997666666667778887776542 22221 11111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchh
Q 011084 164 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 236 (494)
Q Consensus 164 ~~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdT 236 (494)
.+.+...+.++.+...++|++|+.+.+.+.. ..+ +.+.+. +++||.+ |.+.....+ .++++|-
T Consensus 60 ~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~~~-~~~~~~--~iPvV~~----~~~~~~~~~-~~V~~d~ 122 (293)
T 2iks_A 60 DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEH--PFY-QRWAND--PFPIVAL----DRALDREHF-TSVVGAD 122 (293)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSSCTTC--HHH-HTTTTS--SSCEEEE----ESCCCTTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcH--HHH-HHHHhC--CCCEEEE----CCccCcCCC-CEEEecC
Confidence 1234455677888889999999998765421 112 233333 4788765 343332222 4677664
No 170
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=20.31 E-value=1.3e+02 Score=24.89 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=58.1
Q ss_pred CceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCC
Q 011084 85 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 164 (494)
Q Consensus 85 ~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~ 164 (494)
+.+++.|+=+|+. -..+.+.+.. +++.++.||.+- + +.... ....|..++|
T Consensus 3 ~~~~vlIiGaG~~-------g~~l~~~l~~-~~g~~vvg~~d~-------~-----~~~~g--~~i~g~pV~g------- 53 (141)
T 3nkl_A 3 AKKKVLIYGAGSA-------GLQLANMLRQ-GKEFHPIAFIDD-------D-----RKKHK--TTMQGITIYR------- 53 (141)
T ss_dssp CCEEEEEECCSHH-------HHHHHHHHHH-SSSEEEEEEECS-------C-----GGGTT--CEETTEEEEC-------
T ss_pred CCCEEEEECCCHH-------HHHHHHHHHh-CCCcEEEEEEEC-------C-----cccCC--CEecCeEEEC-------
Confidence 3467887766542 2345555543 457899998742 1 11000 0012333443
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 165 ~~e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
.+ .+.+.++++++|.+++--+..+......+.+.+.+.+ ++|.-+|-
T Consensus 54 -~~---~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~g--v~v~~vP~ 100 (141)
T 3nkl_A 54 -PK---YLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLH--VEVLTIPN 100 (141)
T ss_dssp -GG---GHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTT--CEEEECCC
T ss_pred -HH---HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcC--CeEEECCC
Confidence 11 2345677889999888767666666677888887666 57888884
No 171
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=20.16 E-value=85 Score=30.52 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCc---c----hHHHHHHHHHHHHhcCCCCeEEEeeec
Q 011084 167 EQVNAALTACKNLNLDGLVIIGGV---T----SNTDAAYLAETFAEAKCPTKVVGVPVT 218 (494)
Q Consensus 167 e~~~~~~~~l~~~~Id~LviIGGd---~----S~~~A~~Lae~~~~~~~~i~VIgVPkT 218 (494)
+.++++++.+++.++|.+ ++.|| + +......+.+.+.+..-.++|+.||.-
T Consensus 48 ~~l~~lv~~~~~~~~D~v-liaGD~l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~GN 105 (336)
T 2q8u_A 48 KALDKVVEEAEKREVDLI-LLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGN 105 (336)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC-
T ss_pred HHHHHHHHHHHHhCCCEE-EECCccccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 457888899999999954 55555 2 122212233333322101688888843
No 172
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=20.14 E-value=2.9e+02 Score=26.81 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCC
Q 011084 84 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 163 (494)
Q Consensus 84 ~~~~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~ 163 (494)
..++||+|+.||.- + ....++++.+.-.-..+|.++.---.. . +..+...=|-...--..++
T Consensus 86 ~~~~ri~vl~Sg~g----~-nl~~ll~~~~~g~l~~~i~~Visn~~~-----------a-~~~~A~~~gIp~~~~~~~~- 147 (287)
T 3nrb_A 86 TDRKKVVIMVSKFD----H-CLGDLLYRHRLGELDMEVVGIISNHPR-----------E-ALSVSLVGDIPFHYLPVTP- 147 (287)
T ss_dssp TCCCEEEEEECSCC----H-HHHHHHHHHHHTSSCCEEEEEEESSCG-----------G-GCCCCCCTTSCEEECCCCG-
T ss_pred CCCcEEEEEEeCCC----c-CHHHHHHHHHCCCCCeEEEEEEeCChH-----------H-HHHHHHHcCCCEEEEeccC-
Confidence 34689999999983 3 345566555432233466655421111 0 1112112221111101111
Q ss_pred CChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 011084 164 RTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 202 (494)
Q Consensus 164 ~~~e~~-~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~ 202 (494)
.+.+.+ +++++.+++++.|.+|+ -|.+-.-....|..+
T Consensus 148 ~~r~~~~~~~~~~l~~~~~Dlivl-agym~il~~~~l~~~ 186 (287)
T 3nrb_A 148 ATKAAQESQIKNIVTQSQADLIVL-ARYMQILSDDLSAFL 186 (287)
T ss_dssp GGHHHHHHHHHHHHHHHTCSEEEE-SSCCSCCCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhCCCEEEh-hhhhhhcCHHHHhhc
Confidence 122333 46789999999995555 456655555556543
No 173
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=20.05 E-value=5.5e+02 Score=24.12 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=62.9
Q ss_pred eEEEEEecCCCCCCc----------chhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcc-cccCCccc
Q 011084 87 IRVGIVFCGRQSPGG----------HNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY-KNQGGYDM 155 (494)
Q Consensus 87 ~~IgIl~sGG~aPG~----------n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~-~n~GG~~~ 155 (494)
+..+||++||..--+ -.+|.-+++.+.+.. -.+|+-..+ .+.+..+ ...|.. +
T Consensus 18 ~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~--------------~~~i~~~~~~~g~~-v 81 (264)
T 3k8d_A 18 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATD--------------HEDVARAVEAAGGE-V 81 (264)
T ss_dssp CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEES--------------CHHHHHHHHHTTCE-E
T ss_pred ceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECC--------------HHHHHHHHHHcCCE-E
Confidence 457889998877544 367777888776543 345554432 1222222 122332 3
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch---HHHHHHHHHHHHhcCCCCeEEEeee
Q 011084 156 LGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS---NTDAAYLAETFAEAKCPTKVVGVPV 217 (494)
Q Consensus 156 lgS~R~k~~~~e~~~~~~~~l~~~~Id~LviIGGd~S---~~~A~~Lae~~~~~~~~i~VIgVPk 217 (494)
+-+........+.+..+++.++..+-|.++++-||-= -.....|.+.+.+.+..+.+.++|.
T Consensus 82 ~~~~~~~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v 146 (264)
T 3k8d_A 82 CMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 146 (264)
T ss_dssp EECCTTCCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC
T ss_pred EEecCCCCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc
Confidence 2221122211223444444443225689999999963 3445556666666666678888874
Done!