RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011084
(494 letters)
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 557 bits (1437), Expect = 0.0
Identities = 179/489 (36%), Positives = 279/489 (57%), Gaps = 20/489 (4%)
Query: 10 ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
S +Q R Y P+LP L+ + T D ++ F +TYG P+ F
Sbjct: 2 NTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFT 61
Query: 70 RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSE 129
+ + + A+ +GI+ G +PGGHNV+ G++DA+K NP S L GF GG
Sbjct: 62 EGESSL------SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPL 115
Query: 130 GLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
GL +E+T+ ++++Y+N GG+D++ + +I T E N AL K NL+ ++IIGG
Sbjct: 116 GLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175
Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
SNT+AA LAE F + +V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C
Sbjct: 176 DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC 235
Query: 250 TDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAV 309
DA+S +KY++F++LMGR ASHVALEC L++HPN+ I+ EEV A K TL ++ ++ +
Sbjct: 236 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295
Query: 310 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV----------DNISSQL 359
R+ N GV+++PEGLIE IPEV +L+ E+ + + + ++L
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355
Query: 360 SPWASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 416
S + ++ LP FI+ +L +L+ + + +S++ TEKL +++ +N K G Y
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415
Query: 417 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 476
KG F + HFFGY+ R + PS FD DY Y LG+ ++ GL GYM+ + NL
Sbjct: 416 KG-SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD 474
Query: 477 WRCGAAPIT 485
W G P+T
Sbjct: 475 WIAGGVPLT 483
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 103 bits (258), Expect = 7e-24
Identities = 65/317 (20%), Positives = 115/317 (36%), Gaps = 26/317 (8%)
Query: 19 SLYQPELPPC-----LQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATA 73
L LP + + R EF D T S + A
Sbjct: 28 DLKVDRLPGADYPNPSKKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELA-- 85
Query: 74 KVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF- 132
++I +GIV CG PG ++V+ + ++GF G GL
Sbjct: 86 -AARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 133 --AQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGV 190
+Q +E+ + ++ + GG +LG + R + + + L ++ L +GG
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGG-TILGSS----RGPQDPKEMVDTLERLGVNILFTVGGD 199
Query: 191 TSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCT 250
+ A +++ V GVP T++ DL F GF T + Q I
Sbjct: 200 GTQRGALVISQEAKRRGVDISVFGVPKTIDNDL--SFSHRTFGFQTAVEKAVQAIRAAYA 257
Query: 251 DALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQ 310
+A+SA ++LMGR + +A + + S + L E +++ ++
Sbjct: 258 EAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENP------ISE-QEVMSLLE 310
Query: 311 ARAEQDKNHGVILLPEG 327
R VI++ EG
Sbjct: 311 RRFCH-SRSCVIIVAEG 326
Score = 28.5 bits (64), Expect = 5.4
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 429 GYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 469
Y R PS D + L + H AG G + + +
Sbjct: 379 SYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRH 419
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 78.2 bits (193), Expect = 8e-16
Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 36/254 (14%)
Query: 86 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILS 145
+ G++ R+ G + +Y G +G E I +
Sbjct: 21 SAA-GVIEAARKQSG---KIGRIYAGRN---------GIIGALTEDLIDTGQESDAAISA 67
Query: 146 TYKNQGGYDMLGRT----KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 201
+ G K + + + K ++ GG S +++
Sbjct: 68 L-RYTPS-GAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQ 125
Query: 202 TFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE---KY 258
P + + VP T++ DL + GF ++ K + D S
Sbjct: 126 LSGTLGYPIQAIHVPKTVDNDLPI--TDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK 183
Query: 259 YYFIRLMGRRASHVALECTL----QSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE 314
+ + +MGR A +A L + +VIL E++ FD ++ V + +
Sbjct: 184 VFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEIS------FDK-QKFLAKVDSCVK 236
Query: 315 QDKNHGVILLPEGL 328
+ + +++ EG+
Sbjct: 237 K-FGYCSVVVSEGV 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 1e-12
Identities = 78/526 (14%), Positives = 143/526 (27%), Gaps = 159/526 (30%)
Query: 59 HTYGQPLAHFLRATAK------VPDA--QIIT----EHPAIRVGIVFCGRQSPGGHNVVW 106
+ Y L+ F A V D I++ +H I+ S +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH------II----MSKDAVSGTL 65
Query: 107 GLYDALKLHNPKSTLLGFLGGSE----GLFAQKTLEVTKE---ILSTYKNQGGYDMLGR- 158
L+ L L + + F+ ++ + Y Q D L
Sbjct: 66 RLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYND 122
Query: 159 ----TKDQIRTTEQVNAALTACKNLNLDGLVIIGGV-----TSNTDAAYLAE-------- 201
K + + A L V+I GV T L+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 202 -----TFAEAKCPTKVV----------------------GVPVTLN---GDLKNQFVET- 230
P V+ + + ++ +L+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 231 ---------NV-------GFDTICKVNSQLI----SNVCTDALSAEKYYY---------- 260
NV F+ CK+ L+ V TD LSA +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQV-TDFLSAATTTHISLDHHSMTL 298
Query: 261 --------FIRLMGRRASHVALECTLQSHPNMV-ILGEEVAASKLTLFDLTKQI-CDAVQ 310
++ + R + E L ++P + I+ E + T +D K + CD +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLT 356
Query: 311 ARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQ-LSP-WASALFE 368
E N L P E + + S+ +I + LS W +
Sbjct: 357 TIIESSLNV---LEPA-------EYRKMFDRL-SVFPPSA---HIPTILLSLIWFDVIKS 402
Query: 369 ----FLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAI 424
+ K L+ + + + + I E + E +++ + + Y K
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK---- 457
Query: 425 CHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNL 470
+ + +P D Y Y HI +H+ M +
Sbjct: 458 ----TFDSDDLIPPYLD-QYFY--SHIGHHLKNIEHPERMTLFRMV 496
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 64.8 bits (159), Expect = 1e-11
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 39/229 (17%)
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 180
G G GL+ + +++ + +S N+GG LG R + R A+ K
Sbjct: 37 GIYDGYLGLYEDRMVQLDRYSVSDMINRGG-TFLGSARFPE-FRDENIRAVAIENLKKRG 94
Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
+D LV+IGG S A L E +G+P T++ D+ + + +GF T
Sbjct: 95 IDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDI--KGTDYTIGFFTAL-- 144
Query: 241 NSQLISNVCTDAL-------SAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAA 293
+ +A+ S+ + + +MGR + L + V++ E
Sbjct: 145 ------STVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEV--- 195
Query: 294 SKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 342
F + + + ++A + K H ++ + E + +V L I
Sbjct: 196 ----EFSR-EDLVNEIKAGIAKGKKHAIVAITEHMC----DVDELAHFI 235
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 63.6 bits (156), Expect = 3e-11
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 180
G G GL + K ++ + ++GG L R + +T E + K L
Sbjct: 36 GIYNGYAGLISGKIEKLELGSVGDIIHRGG-TKLYTARCPE-FKTVEGREKGIANLKKLG 93
Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV--GFDTIC 238
++GLV+IGG S A L E VGVP T++ D+ T+ GFDT
Sbjct: 94 IEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDI----PGTDFTIGFDTAL 143
Query: 239 KVNSQLISNVCTDAL-------SAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEV 291
N DA+ ++ + Y I +MGR A +AL L +++ E
Sbjct: 144 --------NTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIALWAGLAGGAESILIPEA- 194
Query: 292 AASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 342
+D+ +I ++ E+ K H +I++ EG+ K I
Sbjct: 195 ------DYDM-HEIIARLKRGHERGKKHSIIIVAEGVGSG----VEFGKRI 234
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 62.8 bits (154), Expect = 5e-11
Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 24/222 (10%)
Query: 123 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 180
G G GL A + E ++ N G L R + E A + K
Sbjct: 36 GIRYGFAGLVAGDIFPLESEDVAHLINVSG-TFLYSARYPE-FAEEEGQLAGIEQLKKHG 93
Query: 181 LDGLVIIGGVTSNTDAAYL-AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 239
+D +V+IGG D +Y A +G+P T++ D+ + + +G+DT C
Sbjct: 94 IDAVVVIGG-----DGSYHGALQLTRHGFN--SIGLPGTIDNDI--PYTDATIGYDTACM 144
Query: 240 VNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLF 299
I + A S + + + +MGR +A+ + + +++ E +
Sbjct: 145 TAMDAIDKIRDTASSHHR-VFIVNVMGRNCGDIAMRVGVACGADAIVIPER-------PY 196
Query: 300 DLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKE 341
D+ ++I + ++ E K+HG++++ EG + + + A LK+
Sbjct: 197 DV-EEIANRLKQAQESGKDHGLVVVAEG-VMTADQFMAELKK 236
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 60.1 bits (146), Expect = 9e-10
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 15/211 (7%)
Query: 120 TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACK 177
+L G EG + E + + QGG LG RT ++ EQ++A +
Sbjct: 432 RVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGG-SKLGSKRTL-PKKSFEQISANI---T 486
Query: 178 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDT 236
N+ GLVIIGG + T L E + V +P T++ ++ + +VG DT
Sbjct: 487 KFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNV--PGSDFSVGADT 544
Query: 237 ICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKL 296
+ A ++ + I MG ++A L + + + EE
Sbjct: 545 ALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEE----PF 600
Query: 297 TLFDLTKQICDAVQARAEQDKNHGVILLPEG 327
T+ DL + + + + + G++L E
Sbjct: 601 TIRDLQANV-EHLVQKMKTTVKRGLVLRNEK 630
Score = 49.7 bits (119), Expect = 2e-06
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 33/203 (16%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF--- 203
GG ++G R KD R E A + L +IGG S T A +
Sbjct: 78 QLGG-TVIGSARCKD-FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDL 135
Query: 204 --------------AEAKCPTKVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 247
A +VG+ ++ D N F T++ G D+ ++++
Sbjct: 136 LSDLQKAGKITAEEATRSSYLNIVGLVGSI--D--NDFCGTDMTIGTDSALHRITEIVDA 191
Query: 248 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 307
+ T A S ++ + + +MGR ++AL +L + V + E + +C
Sbjct: 192 ITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDD-----NWEDHLCR 245
Query: 308 AVQARAEQDKNHGVILLPEGLIE 330
+ + +I++ EG I+
Sbjct: 246 RLSETRTRGSRLNIIIVAEGAID 268
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 60.2 bits (146), Expect = 1e-09
Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 50/297 (16%)
Query: 68 FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHN------VVWGLYDALKLHNPKSTL 121
FL + + ++ E + + I+ G + N + L ++
Sbjct: 580 FLSVSKYDDGSYLVPESSRLNIAIIHVGAPTSA-LNPATRVATLNSLAKGHRV------- 631
Query: 122 LGFLGGSEGLFAQKTL-EVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKN 178
G GL + E+ + + N GG +G R+ ++ + +
Sbjct: 632 FAIRNGFAGLIRHGAVRELNWIDVEDWHNTGG-SEIGTNRSL----PSDDMGTVAYYFQQ 686
Query: 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDTI 237
DGL+IIGG + T L A+ + +P T++ ++ E ++G DT
Sbjct: 687 YKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNV--PGTEYSLGSDTC 744
Query: 238 CKVNSQLISNVCTDAL-----SAEKYY---YFIRLMGRRASHVALECTLQSHPNMVILGE 289
N + SA + + + G + ++A L + V E
Sbjct: 745 L--------NTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPE 796
Query: 290 EVAASKLTLFDLTKQI---CDAVQARAEQDKNHGVILLPEGLIESIP--EVYALLKE 341
+ L + + I + ++++ + + E + + A++ E
Sbjct: 797 N----PINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVYTTDLIAAIIGE 849
Score = 52.5 bits (126), Expect = 3e-07
Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 34/221 (15%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
+ GG ++G R K+ R A + +D LV+ GG S T A + + E
Sbjct: 273 SIGG-TIIGTARCKE-FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPEL 330
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 247
+VG+ ++ D N T+ G + + +L+
Sbjct: 331 IKELLGEDKITKEQYETHRNLTIVGLVGSI--D--NDMCGTDSTIGAYSSLERIIELVDY 386
Query: 248 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 307
+ A S + + + +MGR + L + + + + + E + + +
Sbjct: 387 IDATAASHSR-AFVVEVMGRHCGWLGLMSGIATGADYIFIPER----PPSESNWKDDLKK 441
Query: 308 AVQARAEQDKNHGVILLPEGLI--ESIPEVYALLKEIHSLL 346
E+ + +++ EG I + P +K++ +
Sbjct: 442 VCLRHREKGRRKTTVIVAEGAIDDQLNPITSEEVKDVLVEI 482
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 58.9 bits (143), Expect = 2e-09
Identities = 51/301 (16%), Positives = 100/301 (33%), Gaps = 58/301 (19%)
Query: 68 FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHN------VVWGLYDALKLHNPKSTL 121
FL T K ++++ + +GIV G S N ++ L
Sbjct: 375 FLSTTVKDDGSELLPVSDRLNIGIVHVGAPSAA-LNAATRAATLYCLSHGH-------KP 426
Query: 122 LGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKN 178
+ G GL + E++ + + N GG +G R+ +E + +
Sbjct: 427 YAIMNGFSGLIQTGEVKELSWIDVENWHNLGG-SEIGTNRSV----ASEDLGTIAYYFQK 481
Query: 179 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDTI 237
LDGL+I+GG L + + + +P T++ ++ E ++G DT
Sbjct: 482 NKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNV--PGTEYSLGVDTC 539
Query: 238 CKVNSQLISNVCTDAL-----SAEKYY---YFIRLMGRRASHVALECTLQSHPNMVILGE 289
N + SA + + G + ++A L + V E
Sbjct: 540 L--------NALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPE 591
Query: 290 EVAASKLTLFDLTKQICDAVQARAEQ-------DKNHGVILLPEGLIE--SIPEVYALLK 340
+ DL I + + E ++N +++ E S + ++
Sbjct: 592 KK-------IDL-ASIREDITLLKENFRHDKGENRNGKLLVRNEQASSVYSTQLLADIIS 643
Query: 341 E 341
E
Sbjct: 644 E 644
Score = 52.0 bits (125), Expect = 3e-07
Identities = 35/217 (16%), Positives = 80/217 (36%), Gaps = 34/217 (15%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
++GG ++G R+ + R E A + +D LV+ GG S T A +
Sbjct: 68 SEGG-TLIGTARSME-FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSL 125
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETN--VGFDTICKVNSQLISN 247
+VG+ ++ D N T+ +G + + +++
Sbjct: 126 VDELVAEGRFTKEEVAPYKNLSIVGLVGSI--D--NDMSGTDSTIGAYSALERICEMVDY 181
Query: 248 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 307
+ A S + + + +MGR +AL + + + + + E + ++ +
Sbjct: 182 IDATAKSHSR-AFVVEVMGRHCGWLALMAGIATGADYIFIPER----AVPHGKWQDELKE 236
Query: 308 AVQARAEQDKNHGVILLPEGLI--ESIPEVYALLKEI 342
Q + + + I++ EG + + P +K+
Sbjct: 237 VCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDA 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 7e-09
Identities = 62/371 (16%), Positives = 112/371 (30%), Gaps = 132/371 (35%)
Query: 5 FGIPRELSG-------LQQLRSL---YQPELPPCLQGTTVRVEFGDSTTTADPADTHSIS 54
FG G ++LR L Y + ++ + + D
Sbjct: 160 FG------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDA---E 206
Query: 55 RSFPHTYGQPLAHFLRATAKVPDAQIITEH----PAIRVG-----IVFC---GRQSPG-- 100
+ F G + +L + PD + P I V +V G +PG
Sbjct: 207 KVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGEL 263
Query: 101 --------GH--NVV----------W-GLYDALK--LHNPKSTLLGFLGGSEGL--FAQK 135
GH +V W + +++ + T+L F G +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-----TVL-FFIGVRCYEAYPNT 317
Query: 136 TLEVTKEILSTYKNQG--GYDML---GRTKDQIRTT-EQVNAALTACKNLNL------DG 183
+L + S N+G ML T++Q++ + N+ L A K + +
Sbjct: 318 SLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 184 LVIIGGVTSNTDAAY-LAETFAEAKCPT------------KVVGV----PVT-------- 218
LV V+ + Y L T +AK P+ K+ PV
Sbjct: 377 LV----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 219 ------LNGDLKNQFVETNVG------FDT-----ICKVNSQLISNVCTDALSAEKYYYF 261
+N DL V N +DT + ++ + + D + +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-DCI-IRLPVKW 490
Query: 262 IRLMGRRASHV 272
+A+H+
Sbjct: 491 ETTTQFKATHI 501
Score = 56.2 bits (135), Expect = 2e-08
Identities = 80/469 (17%), Positives = 152/469 (32%), Gaps = 151/469 (32%)
Query: 49 DTHSISRSFPHTYGQPLA---HFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVV 105
D H+++ L ++ A+I+ + P + S
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDK------KSNSA------ 144
Query: 106 WGLYDALKLHNPKSTLLGFLGG---SEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 162
L+ A+ + L+ GG ++ F +E+ Y+ Y +L D
Sbjct: 145 --LFRAVG--EGNAQLVAIFGGQGNTDDYF--------EELRDLYQT---YHVL--VGDL 187
Query: 163 IRTTEQVNAALTA----CKNLNLDGLVIIG---GVTSNTDAAYLAETFAEAKCP------ 209
I+ + + + L + + GL I+ ++ D YL CP
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS--IPISCPLIGVIQ 245
Query: 210 -------TKVVGV-PVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCT-DALSAEKYYY 260
K++G P G+L++ T + L++ V + S E ++
Sbjct: 246 LAHYVVTAKLLGFTP----GELRSYLKGA-----TGH--SQGLVTAVAIAETDSWESFFV 294
Query: 261 FIRLMGRRASHVALECTLQSHPNMVI----------LGEEVAASKLTLFDLTKQICDAVQ 310
+R + + C +++PN + E V + L++ +LT+ + VQ
Sbjct: 295 SVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ---EQVQ 350
Query: 311 ARAEQDKNHGVILLPEGLIESI--------------PE-VYALLKEIHSL-----LRQG- 349
+ +H LP G I P+ +Y L + L Q
Sbjct: 351 DYVNKTNSH----LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 350 VPVDNISSQLSPWASALFEFLP---PF-----------IKKQLLLQPESDDSAQLS---- 391
+P S+ S FLP PF I K L+ S ++ +
Sbjct: 407 IP----FSERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 392 --------QIETEKLLAHLVEVEMNKRLK-EGTYKGKKFNAICHF--FG 429
++ + + +V+ + +K E T +F A H FG
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETT---TQFKAT-HILDFG 505
Score = 55.1 bits (132), Expect = 4e-08
Identities = 59/337 (17%), Positives = 94/337 (27%), Gaps = 131/337 (38%)
Query: 46 DPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVV 105
+ AD H F TYG + I+ +P + + I F G G +
Sbjct: 1647 NRADNH-----FKDTYGFSILD------------IVINNP-VNLTIHFGG---EKGKRIR 1685
Query: 106 WGLYDALKLH----------------NPKSTLLGFLGGSEGL-----FAQ---KTLEVTK 141
Y A+ N ST F +GL F Q +E
Sbjct: 1686 -ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLSATQFTQPALTLMEKA- 1742
Query: 142 EILSTYKNQGGYDM--------LGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN 193
K++G LG E AAL + V S
Sbjct: 1743 -AFEDLKSKGLIPADATFAGHSLG---------E--YAALASL-----------ADVMSI 1779
Query: 194 TDAAYL----AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
+ T A VP G +N G + +N ++
Sbjct: 1780 ESLVEVVFYRGMTMQVA--------VPRDELG-------RSNYG---MIAINPGRVAASF 1821
Query: 250 TDALSAEKYYYFIRLMGRRASHVALE-----CTLQSHPNM--VILGEEVAASKLTLFDLT 302
+ E Y + +G+R + +E N V G+ A +T
Sbjct: 1822 SQ----EALQYVVERVGKRTGWL-VEIVNYNV-----ENQQYVAAGDLRALDTVT----- 1866
Query: 303 KQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALL 339
+ + ++ + +I L + L S+ EV L
Sbjct: 1867 -NVLNFIKL-----QKIDIIELQKSL--SLEEVEGHL 1895
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 56.5 bits (137), Expect = 1e-08
Identities = 44/305 (14%), Positives = 99/305 (32%), Gaps = 47/305 (15%)
Query: 59 HTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPG---------------GHN 103
+ + L +F+ + + + + +++ IV G + G GH
Sbjct: 366 TEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMSQGHR 425
Query: 104 VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK-TLEVTKEILSTYKNQGGYDMLGRTKDQ 162
+Y+ G+ G + + + ++GG +G T
Sbjct: 426 PY-AIYN------------GWSGLARHESVRSLNWKDMLGWQ----SRGG-SEIG-TNRV 466
Query: 163 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNG 221
+ + DGL+I+GG + L +V +P TL+
Sbjct: 467 TPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSN 526
Query: 222 DLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH 281
++ E ++G DT + V A S + + G + ++A +L
Sbjct: 527 NV--PGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVG 584
Query: 282 PNMVILGEEVAASKLTLFDLTKQI---CDAVQARAEQDKNHGVILLPEGL--IESIPEVY 336
+ + EE ++L L++ I + + + + +IL S ++
Sbjct: 585 AQVSYVPEE----GISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKALSATKLA 640
Query: 337 ALLKE 341
++
Sbjct: 641 EVITA 645
Score = 47.3 bits (113), Expect = 8e-06
Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 32/200 (16%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
+GG +G R + + E +D L++ GG S T A +
Sbjct: 67 AEGG-TNIGTARCME-FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 247
+ G ++ D N T+ G + + I
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSI--D--NDMSTTDATIGAYSALDRICKAIDY 180
Query: 248 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 307
V A S + + + +MGR +AL + + + + + E+ T + Q+CD
Sbjct: 181 VEATANSHSR-AFVVEVMGRNCGWLALLAGIATSADYIFIPEK----PATSSEWQDQMCD 235
Query: 308 AVQARAEQDKNHGVILLPEG 327
V + K ++++ EG
Sbjct: 236 IVSKHRSRGKRTTIVVVAEG 255
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 52.0 bits (125), Expect = 3e-07
Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 36/195 (18%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAE 205
+ GG +G RT + + DGL+++GG A++
Sbjct: 633 SLGG-SEIGTNRTLPNDADIGMIAYFF---EKYGFDGLILVGG-----FEAFISLHQLER 683
Query: 206 AKCPT-----KVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDAL-----SA 255
A+ +V +P T++ ++ E ++G DT N + SA
Sbjct: 684 ARINYPSLRIPLVLIPATISNNV--PGTEYSLGSDTCL--------NSFMEYCDVIKQSA 733
Query: 256 EKYY---YFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQAR 312
+ + + G + ++A L + + EE + D+ + ++
Sbjct: 734 AATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGISLAQLEMDI-NSLKESFAND 792
Query: 313 AEQDKNHGVILLPEG 327
+ K+ +IL E
Sbjct: 793 QGKTKSGRLILKSEN 807
Score = 48.5 bits (116), Expect = 4e-06
Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 28/198 (14%)
Query: 149 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 206
+GG +G R K+ R A ++ +D L++ GG S T A +
Sbjct: 245 VEGG-TNIGTARCKE-FRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSL 302
Query: 207 KCPT-----------------KVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
+ G +++ D+ + +G + + I +
Sbjct: 303 IEELLQTEQISQQQFNTHQNLNICGAVGSIDNDM--SSTDATIGAFSSLDRICRAIDYID 360
Query: 250 TDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAV 309
A S + + + +MGR + L L + + +++ E+ + + Q+CD V
Sbjct: 361 ATANSHSR-AFIVEVMGRHCGWLGLLAGLATSADYILIPEK----PASSREWQDQMCDIV 415
Query: 310 QARAEQDKNHGVILLPEG 327
+ K ++++ EG
Sbjct: 416 GKHRARGKRKTIVIVAEG 433
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.019
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 10 ELSGLQQLRS---LYQPELPPCL--QGTTVRVE 37
E L++L++ LY + P L + T +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT---ME 47
Score = 29.9 bits (66), Expect = 1.2
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 374 IKK-QLLLQPESDDSA-QL---SQIE 394
+KK Q L+ +DDSA L + +E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 2.4
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 108 LYDALKLHNPKSTLLGFLGGSEGLFAQKTLE 138
L +LKL+ S + L + T+E
Sbjct: 25 LQASLKLYADDS--------APALAIKATME 47
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Thermus thermophilus} SCOP:
c.8.7.1
Length = 164
Score = 28.7 bits (65), Expect = 2.8
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
G+V+ G V D L E A A P K V VP+ + G
Sbjct: 79 RRAWEKGWAGVVVHGAV---RDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLG 134
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta,
beta alpha domain; 1.90A {Geobacillus kaustophilus}
Length = 161
Score = 28.7 bits (65), Expect = 2.8
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
L G++I G + D+A + A CP K V + G
Sbjct: 78 QIACERGLAGVIIHGCI---RDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGG 133
>2lcu_A BC28.1; alpha-barrel, protein binding; NMR {Babesia canis}
Length = 223
Score = 29.1 bits (64), Expect = 3.0
Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 363 ASALFEFLPPFIKKQLLLQPESDDSAQL-SQIETEKLLAHLVEVEMNKRLKEGTYKGKKF 421
A ++ L ++ L+ + D+ ++ + + K++ ++ + N +K +
Sbjct: 105 AISMLYVLSITHRELSSLKNKIDEWKKVKASEDGTKVIQNIKDDRTNTWFVAHGFKVAEL 164
Query: 422 N 422
N
Sbjct: 165 N 165
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 28.6 bits (63), Expect = 3.3
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 39 GDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCG 95
G + A+ H T + + R I ++HP R+G+ CG
Sbjct: 98 GWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCG 154
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone
methyltransferase; beta/BETA/alpha domain, structural
genomics, PSI; HET: TLA; 1.90A {Mycobacterium
tuberculosis} SCOP: c.8.7.1
Length = 183
Score = 28.4 bits (64), Expect = 3.4
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
++ GL++ G V DAA L A P K V +TL G
Sbjct: 109 ELARSTGWTGLIVHGAV---RDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGG 164
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 28.9 bits (65), Expect = 3.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 278 LQSHPNMVILGEEVAASKLTL 298
LQ H N +I+ ++ A +L +
Sbjct: 250 LQLHKNAIIVSDKNATYELKV 270
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E
regulater, hydrolase regulator; HET: PGE PG4; 1.90A
{Pseudomonas aeruginosa}
Length = 162
Score = 28.3 bits (64), Expect = 3.6
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 221
+G+V+ G + D +A+T A A P K + V VT G
Sbjct: 80 EKAAKNGWEGIVVYGCI---RDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGG 135
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 28.9 bits (65), Expect = 3.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 278 LQSHPNMVILGEEVAASKLTL 298
Q HP V + +E A +L +
Sbjct: 229 FQQHPRTVFVCDEDATLELKV 249
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics,
unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Length = 174
Score = 28.3 bits (64), Expect = 4.2
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 174 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTK-------VVGVPVTLNG 221
+ +G++I G V D ++E A P K V V +T+
Sbjct: 83 ILAIKNDWEGVIIYGAV---RDVVAMSEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQN 138
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 28.5 bits (64), Expect = 4.4
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 278 LQSHPNMVILGEEVAASKLTL 298
LQ HP +++ +E + +L +
Sbjct: 229 LQLHPKAIMVCDEPSTMELKV 249
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
Length = 357
Score = 28.9 bits (65), Expect = 4.4
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 166 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA-------------ETFAEAKCPTKV 212
T+ +NA L A K +N VII SN A + A K
Sbjct: 42 TDSINAVLEAAKKVNSP--VIIQ--FSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKA 97
Query: 213 VGVPVTLNGD 222
GVPV L+ D
Sbjct: 98 YGVPVILHTD 107
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 28.0 bits (61), Expect = 8.0
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 336 YALLKEIHSLLRQGVPV--DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQI 393
Y + KE L+ GV + +N P E L L + L +I
Sbjct: 346 YQIKKECALLISYGVSIENENKVIIELPNEKFEIELLS------LDDDSIVNHEQDLPKI 399
Query: 394 ETEKLLAHLVEVEMN 408
+ A+L+ V +
Sbjct: 400 NDK--RANLMLVMLR 412
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 28.0 bits (63), Expect = 8.5
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAA 197
E A + +D LV +GG S A
Sbjct: 73 PIEVAERARAVATDNEIDLLVCVGG-GSTIGLA 104
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 27.6 bits (62), Expect = 9.5
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 165 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAA 197
E A + D V +GG S T
Sbjct: 74 PIESARDATARAREAGADCAVAVGG-GSTTGLG 105
>2raa_A Pyruvate synthase subunit PORC; TM0015, pyruvate oxidoreductase
subunit PORC (EC 1.2.7.1), S genomics; HET: MSE; 2.12A
{Thermotoga maritima MSB8}
Length = 204
Score = 27.2 bits (61), Expect = 9.5
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 217 VTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALEC 276
V ++ L + + + D I VN+ + A+ +AL+
Sbjct: 89 VVIDETLLSPAIVEGLSEDGILLVNTVKDFEFVRKKTGFNGKICVVD-----ATDIALQE 143
Query: 277 TLQSHPNMVILGEEVAASKLTLFD-LTKQICDAVQARAEQD 316
+ PN +LG V + + + + K+I + Q+
Sbjct: 144 IKRGIPNTPMLGALVRVTGIVPLEAIEKRIEKMFGKKFPQE 184
>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA;
FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*
Length = 299
Score = 27.7 bits (61), Expect = 9.6
Identities = 13/127 (10%), Positives = 39/127 (30%), Gaps = 10/127 (7%)
Query: 263 RLMGRRASHVALECTLQSHPNMVILGEEVAAS------KLTLFDLTKQICDAVQA--RAE 314
++ R + +++ + L + + + ++T+ + + R
Sbjct: 72 KVESRINKAITFRPSVEEFSEIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTIQRTP 131
Query: 315 QDKNHGVILLPEGL--IESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPP 372
+ K + + L + P +++ ++ LR + + F P
Sbjct: 132 ELKEQLKTAIEDFLQNSQGKPLTVQMIENLNHGLRPDEGEGRLLYKKENLTKENAVFSSP 191
Query: 373 FIKKQLL 379
K L
Sbjct: 192 EAAKIQL 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,477,916
Number of extensions: 452679
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 52
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.2 bits)