RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011084
(494 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 425 bits (1094), Expect = e-145
Identities = 179/487 (36%), Positives = 275/487 (56%), Gaps = 20/487 (4%)
Query: 12 SGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
S +Q R Y P+LP L+ + T D ++ F +TYG P+ F
Sbjct: 1 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEG 60
Query: 72 TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL 131
+ + A+ +GI+ G +PGGHNV+ G++DA+K NP S L GF GG GL
Sbjct: 61 ESSLS------FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGL 114
Query: 132 FAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191
+E+T+ ++++Y+N GG+D++ + +I T E N AL K NL+ ++IIGG
Sbjct: 115 LENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDD 174
Query: 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
SNT+AA LAE F + +V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C D
Sbjct: 175 SNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRD 234
Query: 252 ALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 311
A+S +KY++F++LMGR ASHVALEC L++HPN+ I+ EEV A K TL ++ ++ +
Sbjct: 235 AMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILK 294
Query: 312 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSP 361
R+ N GV+++PEGLIE IPEV +L+ E+ + + + ++LS
Sbjct: 295 RSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSD 354
Query: 362 WASALFEFLPPFIKKQLLLQPESDDS---AQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 418
+ ++ LP FI+ +L+ D +S++ TEKL +++ +N K G YKG
Sbjct: 355 YMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG 414
Query: 419 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 478
F + HFFGY+ R + PS FD DY Y LG+ ++ GL GYM+ + NL W
Sbjct: 415 -SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWI 473
Query: 479 CGAAPIT 485
G P+T
Sbjct: 474 AGGVPLT 480
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 133 bits (335), Expect = 8e-36
Identities = 70/327 (21%), Positives = 125/327 (38%), Gaps = 29/327 (8%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
R+G++ G SPG + + + H + + G G GL A ++ +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVE--VYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 207
++GG + + +T E + K + GLV+IGG S A L +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKL------TE 114
Query: 208 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR 267
VGVP T++ D+ + +GFDT I + D ++ + Y I +MGR
Sbjct: 115 HGFPCVGVPGTIDNDIP--GTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGR 171
Query: 268 RASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 327
A +AL L +++ E +D+ I ++ E+ K H +I++ EG
Sbjct: 172 HAGDIALWSGLAGGAETILIPEAD-------YDMNDVIAR-LKRGHERGKKHSIIIVAEG 223
Query: 328 LIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKK---QLLLQPES 384
+ + + + R V Q +A L + +LLL+
Sbjct: 224 VGSGVDFGRQIQEATGFETRVTVLGH---VQRGGSPTAFDRVLASRLGARAVELLLE--- 277
Query: 385 DDSAQLSQIETEKLLAH-LVEVEMNKR 410
+ I+ +L+ H + E NK
Sbjct: 278 GKGGRCVGIQNNQLVDHDIAEALANKH 304
Score = 33.5 bits (76), Expect = 0.045
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 428 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 469
G+ RG P+ FD A LG +L G G + N
Sbjct: 247 LGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQN 288
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 121 bits (305), Expect = 1e-31
Identities = 51/264 (19%), Positives = 107/264 (40%), Gaps = 19/264 (7%)
Query: 88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 147
++G++ G +PG + + G+ + + ++G G GL+ + +++ + +S
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSALTEGLE--VMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 148 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 207
N+GG + + R A+ K +D LV+IGG S A L E
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------ 115
Query: 208 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR 267
+G+P T++ D+K + +GF T + I + + S+ + + +MGR
Sbjct: 116 MGFPCIGLPGTIDNDIKG--TDYTIGFFTALSTVVEAIDRLRDTS-SSHQRISVVEVMGR 172
Query: 268 RASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 327
+ L + V++ E F + + + ++A + K H ++ + E
Sbjct: 173 YCGDLTLAAAIAGGCEFVVVPEVE-------FS-REDLVNEIKAGIAKGKKHAIVAITEH 224
Query: 328 LIESIPEVYALLKEIHSLLRQGVP 351
+ + + + KE R V
Sbjct: 225 MCDVDELAHFIEKETGRETRATVL 248
Score = 38.5 bits (89), Expect = 0.001
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 406 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMA 465
E+ +++ T G+ RG P +D A +G +L AG G
Sbjct: 230 ELAHFIEKET----GRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCV 285
Query: 466 TVTN 469
+ N
Sbjct: 286 GIQN 289
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 30.0 bits (67), Expect = 0.37
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 258 YYYFIRLMGRRASHVALECTLQSHPNMVILGE------EVAASKLTLFDLTKQICDAVQA 311
+ RL+GRR ++ + P +I + EV K+ ++ ++ ++
Sbjct: 64 LFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKK 123
Query: 312 RAEQDKNHGV 321
AE V
Sbjct: 124 TAEDYLGEPV 133
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 30.2 bits (67), Expect = 0.60
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 151 GGYDMLGRTKDQIRT------TEQVNAALTACKNL----------NLDGLVIIGGVTSNT 194
G + LGR +Q++ E+V + L + + + + S
Sbjct: 405 GNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK 464
Query: 195 DA------AYLAETFAEAKCPTKVVGV---PVTLNG 221
+ +E P+ + + P+T NG
Sbjct: 465 HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNG 500
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID
subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 27.1 bits (60), Expect = 1.7
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 333 PEVYALLKE-IHSLLRQGVPVDNISSQL-SPWASALFEFLPPFIKKQL-LLQPESDDSAQ 389
E A +KE + +LL + ++ +S+L S+ +L PF+K+ L L+ + DSA
Sbjct: 32 TETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAA 91
Query: 390 LSQ 392
Q
Sbjct: 92 FIQ 94
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 28.5 bits (63), Expect = 2.1
Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 53/215 (24%)
Query: 37 EFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGR 96
E G T P + +P + D + G +
Sbjct: 413 ETGGFMITPLPGAIELK----AGSATRPFFG---VQPALVDNEG-HPQEGATEGNLVITD 464
Query: 97 QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDML 156
PG ++G + + + + ++ + + + G Y +
Sbjct: 465 SWPGQARTLFG--------DHERFEQTYFSTFKNMY--FSGD-----GARRDEDGYYWIT 509
Query: 157 GRTKDQIRT------TEQVNAALTACKNL----------NLDGLVIIGGVTSNTDA---- 196
GR D + T ++ +AL A + + G I VT N
Sbjct: 510 GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP 569
Query: 197 -------AYLAETFAEAKCPTKVVGV---PVTLNG 221
++ + P + P T +G
Sbjct: 570 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 604
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 27.8 bits (61), Expect = 3.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 278 LQSHPNMVILGEEVAASKLTL 298
Q HP V + +E A +L +
Sbjct: 229 FQQHPRTVFVCDEDATLELKV 249
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 27.5 bits (60), Expect = 4.8
Identities = 23/139 (16%), Positives = 36/139 (25%), Gaps = 22/139 (15%)
Query: 28 CLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAI 87
+ T + E G T + P + P A V D E
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMK---PGSASFPFFGI---DAVVLDPNTGEELNTS 444
Query: 88 RVGIVFCGRQS-PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST 146
V + + P +W N L +L G + T + +
Sbjct: 445 HAEGVLAVKAAWPSFARTIWK--------NHDRYLDTYLNPYPGYY--FTGD-----GAA 489
Query: 147 YKNQGGYDMLGRTKDQIRT 165
G +LGR D +
Sbjct: 490 KDKDGYIWILGRVDDVVNV 508
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 384
Score = 27.1 bits (60), Expect = 5.9
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 256 EKYYYFIRLMGRRASHV-ALECTLQSHPNMV 285
K YF+ +R + AL Q + + +
Sbjct: 28 NKMGYFVTPRWKRLTEYEALTVYAQPNADWI 58
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 27.2 bits (60), Expect = 6.0
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 350 VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNK 409
+P+D + S L P + L L + K QP L+ + + +
Sbjct: 7 IPIDQLPS-LPPLPTDLRTRLDAALAKPAAQQPTWPADQALAMRTVLESVPPVTVPSEIV 65
Query: 410 RLKEG---TYKGKKF 421
RL+E KG+ F
Sbjct: 66 RLQEQLAQVAKGEAF 80
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 26.7 bits (58), Expect = 6.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 278 LQSHPNMVILGEEVAASKLTL 298
LQ HP +++ +E + +L +
Sbjct: 229 LQLHPKAIMVCDEPSTMELKV 249
>d1pz4a_ d.106.1.1 (A:) Sterol carrier protein 2 (SCP2) {Yellow
fever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 113
Score = 25.3 bits (55), Expect = 7.9
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 406 EMNKRLKEGTYKGKKFNAICHF 427
++ KRL+ ++ + F
Sbjct: 14 KIAKRLESIDPANRQVEHVYKF 35
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 25.6 bits (56), Expect = 8.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 437 PSKFDCDYAYVLGHICYHILAAGL 460
+K D AY + ++ GL
Sbjct: 36 YTKVDRSAAYAARWVAKSLVKGGL 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,807,188
Number of extensions: 83244
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 16
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)