Query 011085
Match_columns 494
No_of_seqs 296 out of 886
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03153 hypothetical protein; 100.0 5E-109 1E-113 870.3 40.5 409 78-492 117-533 (537)
2 PF04646 DUF604: Protein of un 100.0 1.8E-76 4E-81 577.1 22.6 249 216-467 1-255 (255)
3 KOG2246 Galactosyltransferases 100.0 1.1E-46 2.3E-51 390.7 9.9 291 77-383 66-364 (364)
4 PF02434 Fringe: Fringe-like; 100.0 1.1E-31 2.4E-36 266.7 8.8 210 78-307 1-232 (252)
5 KOG3708 Uncharacterized conser 99.4 7.8E-13 1.7E-17 139.7 8.6 164 82-274 25-190 (681)
6 KOG2287 Galactosyltransferases 99.0 4.3E-09 9.3E-14 109.8 15.5 207 82-310 94-329 (349)
7 PLN03193 beta-1,3-galactosyltr 98.9 3.7E-08 8E-13 103.8 14.9 106 173-282 235-356 (408)
8 PLN03133 beta-1,3-galactosyltr 98.8 7.4E-08 1.6E-12 106.8 16.4 177 83-274 385-590 (636)
9 PF01762 Galactosyl_T: Galacto 98.7 1.5E-07 3.2E-12 89.8 13.6 113 157-277 66-195 (195)
10 PTZ00210 UDP-GlcNAc-dependent 98.4 2.6E-06 5.7E-11 89.0 12.8 133 172-310 197-347 (382)
11 KOG2288 Galactosyltransferases 98.1 2.9E-05 6.2E-10 77.3 11.0 102 173-281 107-225 (274)
12 cd04186 GT_2_like_c Subfamily 93.6 0.21 4.6E-06 44.1 6.6 85 173-277 73-158 (166)
13 cd02520 Glucosylceramide_synth 92.1 0.42 9E-06 44.8 6.8 86 173-278 85-171 (196)
14 TIGR03469 HonB hopene-associat 91.4 11 0.00023 39.9 17.0 96 173-274 132-252 (384)
15 PF13641 Glyco_tranf_2_3: Glyc 90.7 0.88 1.9E-05 43.1 7.4 105 161-277 77-203 (228)
16 PRK11204 N-glycosyltransferase 90.0 4.7 0.0001 42.6 13.0 99 173-278 133-254 (420)
17 TIGR03472 HpnI hopanoid biosyn 89.2 11 0.00023 39.6 14.8 99 173-278 125-247 (373)
18 cd02526 GT2_RfbF_like RfbF is 89.0 1.7 3.8E-05 41.2 8.0 99 173-276 74-196 (237)
19 PF01755 Glyco_transf_25: Glyc 86.4 2.8 6E-05 39.6 7.6 90 151-245 67-189 (200)
20 cd04185 GT_2_like_b Subfamily 85.6 2.7 5.8E-05 39.0 7.0 89 173-278 78-167 (202)
21 cd06532 Glyco_transf_25 Glycos 85.0 2.6 5.6E-05 37.6 6.3 51 154-245 67-117 (128)
22 cd06436 GlcNAc-1-P_transferase 84.7 1.9 4.2E-05 40.3 5.6 67 174-241 89-178 (191)
23 PF13506 Glyco_transf_21: Glyc 84.5 4.4 9.6E-05 38.2 8.0 99 173-277 30-147 (175)
24 PRK14583 hmsR N-glycosyltransf 84.4 23 0.00051 38.1 14.4 99 173-278 154-275 (444)
25 cd04192 GT_2_like_e Subfamily 83.8 4.1 8.8E-05 38.1 7.4 94 173-271 81-195 (229)
26 PF13632 Glyco_trans_2_3: Glyc 82.5 2.1 4.5E-05 39.7 4.8 94 177-277 1-117 (193)
27 cd06421 CESA_CelA_like CESA_Ce 82.4 2.2 4.8E-05 40.2 5.0 94 173-274 83-201 (234)
28 cd06439 CESA_like_1 CESA_like_ 81.7 5.4 0.00012 38.4 7.5 30 174-203 109-138 (251)
29 TIGR01556 rhamnosyltran L-rham 80.9 3.9 8.4E-05 40.6 6.4 28 173-200 72-99 (281)
30 cd06434 GT2_HAS Hyaluronan syn 79.5 4.7 0.0001 38.2 6.2 28 173-200 76-103 (235)
31 cd06437 CESA_CaSu_A2 Cellulose 79.1 3.1 6.8E-05 39.7 4.9 97 173-276 86-205 (232)
32 cd06438 EpsO_like EpsO protein 78.4 3.2 6.9E-05 38.3 4.5 38 173-210 80-117 (183)
33 cd06427 CESA_like_2 CESA_like_ 78.0 2.5 5.5E-05 40.9 3.9 97 174-277 84-205 (241)
34 PF05679 CHGN: Chondroitin N-a 77.7 1.9 4.2E-05 47.6 3.3 66 244-310 1-71 (499)
35 COG1215 Glycosyltransferases, 76.7 65 0.0014 33.7 14.4 100 173-279 136-260 (439)
36 cd04188 DPG_synthase DPG_synth 75.4 18 0.00039 33.9 8.9 101 174-280 82-204 (211)
37 cd06435 CESA_NdvC_like NdvC_li 75.2 14 0.00029 35.2 8.1 97 173-276 83-201 (236)
38 cd06420 GT2_Chondriotin_Pol_N 73.6 11 0.00024 34.0 6.8 91 173-273 78-169 (182)
39 PLN03181 glycosyltransferase; 71.9 1.2E+02 0.0026 33.2 14.7 46 153-201 180-225 (453)
40 PF13704 Glyco_tranf_2_4: Glyc 70.6 8.7 0.00019 31.9 4.9 24 173-196 70-97 (97)
41 cd04195 GT2_AmsE_like GT2_AmsE 70.2 5.5 0.00012 36.8 3.9 96 173-275 79-192 (201)
42 cd04196 GT_2_like_d Subfamily 70.1 20 0.00044 33.0 7.8 91 173-269 78-189 (214)
43 TIGR03030 CelA cellulose synth 69.7 48 0.001 38.3 12.1 94 173-274 227-348 (713)
44 PTZ00260 dolichyl-phosphate be 67.2 1.6E+02 0.0035 30.6 14.8 99 174-278 162-286 (333)
45 cd06433 GT_2_WfgS_like WfgS an 67.2 17 0.00036 32.8 6.4 94 174-273 75-183 (202)
46 cd04184 GT2_RfbC_Mx_like Myxoc 67.1 11 0.00024 34.6 5.3 99 173-277 82-194 (202)
47 cd06442 DPM1_like DPM1_like re 66.3 17 0.00036 34.0 6.4 37 174-210 78-115 (224)
48 cd02525 Succinoglycan_BP_ExoA 66.1 20 0.00043 33.9 6.9 96 174-275 81-199 (249)
49 cd02522 GT_2_like_a GT_2_like_ 65.8 15 0.00033 34.2 6.1 91 174-272 72-175 (221)
50 PF02485 Branch: Core-2/I-Bran 65.1 38 0.00082 33.0 8.9 151 85-243 1-172 (244)
51 cd04187 DPM1_like_bac Bacteria 63.8 18 0.0004 32.8 6.0 70 174-243 80-164 (181)
52 PRK11498 bcsA cellulose syntha 60.6 1.6E+02 0.0034 35.2 14.1 93 173-274 338-459 (852)
53 cd04179 DPM_DPG-synthase_like 59.4 19 0.00041 32.5 5.3 37 175-211 80-117 (185)
54 cd00761 Glyco_tranf_GTA_type G 54.7 20 0.00044 30.0 4.4 54 174-244 77-130 (156)
55 PRK05454 glucosyltransferase M 54.4 4.1E+02 0.0088 31.0 16.9 28 173-200 219-246 (691)
56 PLN02726 dolichyl-phosphate be 53.3 52 0.0011 31.8 7.5 38 174-211 93-131 (243)
57 cd02510 pp-GalNAc-T pp-GalNAc- 52.9 1.7E+02 0.0036 29.3 11.3 26 174-199 83-108 (299)
58 PRK14716 bacteriophage N4 adso 52.5 60 0.0013 36.1 8.6 101 174-277 158-282 (504)
59 cd04191 Glucan_BSP_ModH Glucan 49.8 40 0.00087 33.8 6.2 105 173-278 94-225 (254)
60 COG1216 Predicted glycosyltran 48.4 2E+02 0.0044 29.1 11.2 99 177-280 87-216 (305)
61 PF00535 Glycos_transf_2: Glyc 44.7 14 0.0003 32.0 1.8 37 174-210 78-115 (169)
62 PRK10714 undecaprenyl phosphat 42.3 53 0.0011 34.0 5.9 71 173-243 89-174 (325)
63 PF05637 Glyco_transf_34: gala 39.9 34 0.00074 34.1 3.9 32 154-188 59-90 (239)
64 cd06423 CESA_like CESA_like is 32.6 60 0.0013 27.8 3.9 27 173-199 77-103 (180)
65 KOG3832 Predicted amino acid t 28.8 51 0.0011 32.9 3.0 53 6-58 103-158 (319)
66 cd06913 beta3GnTL1_like Beta 1 28.5 50 0.0011 31.1 2.9 38 173-210 83-120 (219)
67 KOG2246 Galactosyltransferases 25.0 69 0.0015 34.2 3.4 21 224-244 213-233 (364)
68 COG3306 Glycosyltransferase in 25.0 3.7E+02 0.0079 27.3 8.5 22 226-247 155-176 (255)
69 cd02514 GT13_GLCNAC-TI GT13_GL 23.6 1.8E+02 0.004 30.7 6.2 84 154-241 77-174 (334)
70 PF10111 Glyco_tranf_2_2: Glyc 23.5 3E+02 0.0065 27.6 7.6 96 173-274 87-212 (281)
71 COG4698 Uncharacterized protei 21.5 3.1E+02 0.0066 26.8 6.6 38 83-121 50-88 (197)
72 PF09258 Glyco_transf_64: Glyc 21.0 1.5E+02 0.0032 29.8 4.7 100 173-273 74-187 (247)
No 1
>PLN03153 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-109 Score=870.32 Aligned_cols=409 Identities=42% Similarity=0.763 Sum_probs=384.3
Q ss_pred CCCCCCeEEEEEecCCcchHhHHHHHHHhhCCCCceEEEEccCCCCCCCCCCCCCCcEEecCCCCCccccCCCCcchhhH
Q 011085 78 NPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVR 157 (494)
Q Consensus 78 ~~~~~s~IvFGIaTS~~~~~~R~~~vk~Ww~~~~~r~~vflD~~~~~~~~~~~~Lp~v~Is~d~sr~~yt~~~g~~sa~R 157 (494)
.+|+++||+|||+|+.+.|++|++|+|.||+++.+|++||+|+...+. ..+..+|++.|+.|++||+|+++.|+++++|
T Consensus 117 ~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~-~~~~~~P~i~is~d~s~f~y~~~~Gh~sa~r 195 (537)
T PLN03153 117 AELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPE-EGDDSLPPIMVSEDTSRFRYTNPTGHPSGLR 195 (537)
T ss_pred CCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCC-CCcCCCCCEEeCCCcccccccCCCCcHHHHH
Confidence 579999999999999999999999999999999999999999886542 3677899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcccccccccccceeeEEcHHH
Q 011085 158 VARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSL 237 (494)
Q Consensus 158 i~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~L 237 (494)
|+|++.|+++++. |++|||||+||||||+++||+++|++||+++++|||+++|...++..|+|.||||||||+||++|
T Consensus 196 I~rmv~et~~~~~--pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSrPL 273 (537)
T PLN03153 196 ISRIVLESFRLGL--PDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPL 273 (537)
T ss_pred HHHHHHHHHHhhC--CCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcHHH
Confidence 9999999998876 99999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCCCCCCCCCCCcCccccCCCCCccccCCCCCCCCCCCCCC
Q 011085 238 ARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQLDMRGDMFGMLSAHPLSPLLSLHHLDAIDPIFPNMN 317 (494)
Q Consensus 238 l~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgfhQ~d~~gd~~G~~~s~~~~P~lSlHH~~~~~~~fp~~~ 317 (494)
|++|.+.+++|.++|+..++||.+|++||+++||+||+++||||+|+.||++|+|++||++|+||||||+.++|+||+|+
T Consensus 274 ae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~~~p~fP~~~ 353 (537)
T PLN03153 274 AEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPFYPGLS 353 (537)
T ss_pred HHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceeeeeccccccccCCcc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccCccceeeeeeeccCCceeEEEEeeeEEEEEEcCCCCChhhHHHHHHHhhccCCCCCccceeccCCC
Q 011085 318 RTQALQHLFKAVNVDPARILQQTVCYDQSSQLTVSVAWGFAVQVYEGNQLLPDLLSLQRTFTSWRRGSNVESHFMFNLRD 397 (494)
Q Consensus 318 ~~~al~~l~~~~~~~~~~~lqr~~~~d~~~~w~~~vs~GySi~~y~~~~~~~dl~~~~~Tf~~w~~~~~~~~~f~f~~r~ 397 (494)
+.+|++++.+|+++|++++|||++|||..++|+|||||||||++|++++.++||+++|+||.+|++..+ ..+|+||||+
T Consensus 354 ~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fsvSwGysV~~y~~~~~~~dl~~~e~Tf~~w~~~~~-~~~f~fntr~ 432 (537)
T PLN03153 354 SLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISH-RNEFDLDTRD 432 (537)
T ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEEEeccEEEEEecCCCCchhhhhhHhhhhhhcccCC-CCCccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988775 5789999999
Q ss_pred CCCCCCCCCeEEEEceeeecCCcEEEEEeeCCc-------CCCCCcccc-CCccEEEEeccCCCcchhhhcCcccccccc
Q 011085 398 YPRDPCKRPIVFFLESVLSHNNSVQSNYVKHVV-------GNCARADVV-RKIEKIRVFSEKLELDVEEMKSPRRQCCDI 469 (494)
Q Consensus 398 ~~~~~c~r~~~~~l~~v~~~~~~v~~~Y~r~~~-------~~c~~~~~~-~~~~~i~V~~~~~~~~~~~~~~prr~cc~~ 469 (494)
+++++|++|++|||++|..++++|+|+|+|+.. .+|.+.+++ ..|++|+|+++++ +..|. +||||+||+|
T Consensus 433 ~~r~~c~~p~~f~l~~~~~~~~~~~~~Y~r~~~~~~~~~~~~C~~~~~~~~~v~~i~V~~~~~-~~~w~-~aprr~CC~v 510 (537)
T PLN03153 433 PIKSVCKKPILFFLKDVGREGNATLGTYSRARMKDDLKRKVFCFPRSLPLPYVEKIQVLGFPL-SKNWH-LVPRRLCCRL 510 (537)
T ss_pred CCCCcccCceEEEeeeccccCCeeEEEEEEecccccccccccccccCCChhhceEEEEecCCC-ccchh-hcchhhheec
Confidence 999999999999999997777789999998842 358888765 7899999998554 55565 5999999999
Q ss_pred ccCCCCeEEEEEeeeCCCceeec
Q 011085 470 FPTYNESMNIKIRQCGGNELISM 492 (494)
Q Consensus 470 ~~~~~~~~~i~~~~c~~~e~~~~ 492 (494)
.++++++|+|+||+|++||+++.
T Consensus 511 ~~~~~~~~~i~v~~C~~~e~~~~ 533 (537)
T PLN03153 511 NQTSDELLTLTVGQCEKGSLGSF 533 (537)
T ss_pred cCCCCCcEEEEEEeccCCccccc
Confidence 98889999999999999999863
No 2
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=100.00 E-value=1.8e-76 Score=577.09 Aligned_cols=249 Identities=57% Similarity=1.004 Sum_probs=238.1
Q ss_pred CcccccccccccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCCCCCCCCCCCcCccccC
Q 011085 216 QNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQLDMRGDMFGMLSAH 295 (494)
Q Consensus 216 q~~~fg~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgfhQ~d~~gd~~G~~~s~ 295 (494)
||..|+|+||||||||+||+||+++|++++|.|+++|+..||||.+|++||+++||+||.++||||+|++||++|++++|
T Consensus 1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~ 80 (255)
T PF04646_consen 1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEAH 80 (255)
T ss_pred CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeecC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCCCChHHHHHHHHhhhccCccceeeeeeeccCCceeEEEEeeeEEEEEEcCCCCChhhHHHH
Q 011085 296 PLSPLLSLHHLDAIDPIFPNMNRTQALQHLFKAVNVDPARILQQTVCYDQSSQLTVSVAWGFAVQVYEGNQLLPDLLSLQ 375 (494)
Q Consensus 296 ~~~P~lSlHH~~~~~~~fp~~~~~~al~~l~~~~~~~~~~~lqr~~~~d~~~~w~~~vs~GySi~~y~~~~~~~dl~~~~ 375 (494)
+..|++|||||+.++||||+|++.+||+||++|+++|++++|||++|||++++|++|||||||||+|++.++++||+.++
T Consensus 81 ~~~pl~SlHH~~~~~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~~~l~~~dLe~~~ 160 (255)
T PF04646_consen 81 PLAPLVSLHHWDSVDPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYRGILTPRDLETPE 160 (255)
T ss_pred CCCceeeeeehhhccccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEECCCCChHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCccceeccCCCCCCCCCCCCeEEEEceeee--cCCcEEEEEeeCCc--CCCCCccc-c-CCccEEEEec
Q 011085 376 RTFTSWRRGSNVESHFMFNLRDYPRDPCKRPIVFFLESVLS--HNNSVQSNYVKHVV--GNCARADV-V-RKIEKIRVFS 449 (494)
Q Consensus 376 ~Tf~~w~~~~~~~~~f~f~~r~~~~~~c~r~~~~~l~~v~~--~~~~v~~~Y~r~~~--~~c~~~~~-~-~~~~~i~V~~ 449 (494)
+||.+|++.++ ..+|+|||||+++|+|+||++|||++|.. ++++++++|+|+.. ++|.+.+. + .+|++|+|++
T Consensus 161 rTF~~W~~~~~-~~~f~FnTRp~~~dpC~rP~vffL~~v~~~~~~~~t~s~Y~r~~~~~~~C~~~~~~p~~~v~~I~V~~ 239 (255)
T PF04646_consen 161 RTFRTWYRRSD-RTPFAFNTRPVPRDPCQRPTVFFLSSVRSDSGSNQTVSSYVRHRVRNPNCCWPMADPLSKVQRIRVLK 239 (255)
T ss_pred HHhhcccCcCc-CCceeccCCCCcCCCCCCCeEEEEeeeeecCCCCeEEEEEEecccCCCCCCCCCCCchhhceEEEEEc
Confidence 99999999886 68999999999999999999999999986 45679999999875 47999873 4 9999999999
Q ss_pred cCCCcchhhhcCcccccc
Q 011085 450 EKLELDVEEMKSPRRQCC 467 (494)
Q Consensus 450 ~~~~~~~~~~~~prr~cc 467 (494)
+++|+.|+ +|||||||
T Consensus 240 -k~~~~~w~-~aPRR~CC 255 (255)
T PF04646_consen 240 -KPDPDLWK-KAPRRQCC 255 (255)
T ss_pred -ccCCcccc-cCccccCC
Confidence 88899898 69999999
No 3
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=390.73 Aligned_cols=291 Identities=36% Similarity=0.535 Sum_probs=261.3
Q ss_pred CCCCCCCeEEEE-EecCCcchHhHHHHHHHhhCCCCceEEEEccCCCCC-C--CCCCCCCCcEEecCCCCCcc---ccCC
Q 011085 77 ANPLTRRHLLFS-IASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADS-S--SAGDPSLPRIVISADTSKFP---FTFP 149 (494)
Q Consensus 77 ~~~~~~s~IvFG-IaTS~~~~~~R~~~vk~Ww~~~~~r~~vflD~~~~~-~--~~~~~~Lp~v~Is~d~sr~~---yt~~ 149 (494)
...+++.|++|| ++++...|..|..++.-||.++.++..++++...+. . -.....+|++ ++.++++|+ |+.+
T Consensus 66 ~~~~~i~~~~~g~~~~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~-~s~~~~~f~~v~~~~~ 144 (364)
T KOG2246|consen 66 SLTTDILHLVFGIIASSIALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPT-LSKDDSRFPTVYYNLP 144 (364)
T ss_pred ccccchhhhccCCccccchhccCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCcc-CCCCCCcCceeeccCC
Confidence 367899999999 999999999999999999999999999999865332 1 1223446777 999999998 8899
Q ss_pred CCcchhhHHHHHHHHHHH-hcCCCCCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcccccccccccc
Q 011085 150 KGLRSAVRVARVVKEAVD-LTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGG 228 (494)
Q Consensus 150 ~g~~sa~Ri~riv~e~~~-~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~~fg~~~A~GG 228 (494)
.|.+++||+.|++.+.+. ... .++|||+++||||||+++||+++|++|||++|+|||..+|.+.++. +++.||+||
T Consensus 145 ~g~~~~~~ktr~~~~yv~~~~~--~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~~-y~~g~ag~~ 221 (364)
T KOG2246|consen 145 DGYRSLWRKTRIAFKYVYDHIL--KDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQNG-YSSGGAGYV 221 (364)
T ss_pred cchHHHHHHHHHHHHHHHHhcc--CCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccccccc-cccCCCCcc
Confidence 999999999999887764 554 8999999999999999999999999999999999999999998887 666777788
Q ss_pred eeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCCCCCCCCCCCcCccccCCCCCccccCCCCC
Q 011085 229 GGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQLDMRGDMFGMLSAHPLSPLLSLHHLDA 308 (494)
Q Consensus 229 aG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgfhQ~d~~gd~~G~~~s~~~~P~lSlHH~~~ 308 (494)
+|+++++++++++.+..+.|.+++.. +++|.+|++||+++||+++.+ ||.|.+|...|+..+|++.|.+++||+..
T Consensus 222 ls~aa~~~la~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~rf~~~~p~~~~~p~~s~~~~~~ 297 (364)
T KOG2246|consen 222 LSFAALRRLAERLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRGRFLPLLPAHPIAPLVSLHHLWL 297 (364)
T ss_pred eeHHHHHHHHHHHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhcccccCCCChhhccCCcccccccee
Confidence 88888888888888889999998876 789999999999999999998 99999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHhhhccCccceeeeeeeccCCceeEEEEeeeEEEEEEcCCCCChhhHHHHHHHhhccC
Q 011085 309 IDPIFPNMNRTQALQHLFKAVNVDPARILQQTVCYDQSSQLTVSVAWGFAVQVYEGNQLLPDLLSLQRTFTSWRR 383 (494)
Q Consensus 309 ~~~~fp~~~~~~al~~l~~~~~~~~~~~lqr~~~~d~~~~w~~~vs~GySi~~y~~~~~~~dl~~~~~Tf~~w~~ 383 (494)
+ +||+++...+..+++.+++.++. .+|+.+|||..+.|+++++|||.+++++.... .+++||.+|++
T Consensus 298 ~--~fp~~~~~~~~s~~~vsfh~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~~ 364 (364)
T KOG2246|consen 298 V--YFPNQNGSGCCSDLAVSFHYLSP-IEMQSFCYDIYRLRTFGVSWGYTVQIIRPNLS-----RPSRTFSSWND 364 (364)
T ss_pred e--ecCCCchhhHHHHhhHhhccCCH-HHHHHHhhhhhheeeccccccccccccccccc-----ccccccCCCCC
Confidence 9 99999999999999999999988 99999999999999999999999999998776 78999999963
No 4
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.97 E-value=1.1e-31 Score=266.74 Aligned_cols=210 Identities=23% Similarity=0.351 Sum_probs=117.9
Q ss_pred CCCCCCeEEEEEecCCcchHhHHHHHHHhhCCCCceEEE-EccCCCCCCCCCCCCCCc-----EEecCCCCCccccCCCC
Q 011085 78 NPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALT-FLDRAADSSSAGDPSLPR-----IVISADTSKFPFTFPKG 151 (494)
Q Consensus 78 ~~~~~s~IvFGIaTS~~~~~~R~~~vk~Ww~~~~~r~~v-flD~~~~~~~~~~~~Lp~-----v~Is~d~sr~~yt~~~g 151 (494)
+++++++|+|+|+|+++++++|+.+++.+|.....+..+ |+|.++++ +|. +.+. +++. .+.
T Consensus 1 ~~~~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~-------l~~~~~~~l~~~-~~~~-~~~---- 67 (252)
T PF02434_consen 1 EPVTLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPS-------LPTVTGVHLVNP-NCDA-GHC---- 67 (252)
T ss_dssp ----GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HH-------HHHHHGGGEEE--------------
T ss_pred CCcccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccccc-------cccccccccccC-CCcc-hhh----
Confidence 368999999999999999999999888888886665555 78866432 332 2222 2221 011
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcc----------ccc
Q 011085 152 LRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNA----------KHS 221 (494)
Q Consensus 152 ~~sa~Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~----------~fg 221 (494)
+.+..+......-.. .. +++|||+++|||||++++||+++|++||+++|+|||.++....... .-+
T Consensus 68 -~~~~~~~~~~~y~~~-~~--~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~ 143 (252)
T PF02434_consen 68 -RKTLSCKMAYEYDHF-LN--SDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSG 143 (252)
T ss_dssp ------HHHHHHHHHH-HH--HT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE--------------------
T ss_pred -HHHHHHHHHHHHHhh-hc--CCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCc
Confidence 111222111111111 12 6899999999999999999999999999999999999985432111 124
Q ss_pred ccccccceeeEEcHHHHHHHHHhhHHhh--hhccc-CCcchHHHHHHHHH-cCCccccCCCCCCCCCC--CCCcCccccC
Q 011085 222 FGMAFGGGGFAISHSLARVLAGALDSCL--MRYAH-LYGSDARVFSCLVE-LGVGLTPEPGFHQLDMR--GDMFGMLSAH 295 (494)
Q Consensus 222 ~~~A~GGaG~vLSr~Ll~~L~~~~d~C~--~~~~~-~~ggD~~L~~Ci~~-lGV~Lt~~pgfhQ~d~~--gd~~G~~~s~ 295 (494)
+.||+|||||+|||+|+++|.+....|. ..... ...+|+.||.||+. +||++|+.+.|||.-.. ......+..
T Consensus 144 ~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~- 222 (252)
T PF02434_consen 144 FWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHR- 222 (252)
T ss_dssp --EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-GGG--TTTGGG-
T ss_pred eEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcccccCCHHHhcc-
Confidence 4689999999999999999998776653 22211 24579999999999 99999999999996443 233334444
Q ss_pred CCCCccccCCCC
Q 011085 296 PLSPLLSLHHLD 307 (494)
Q Consensus 296 ~~~P~lSlHH~~ 307 (494)
++.||+|+..
T Consensus 223 --q~~~s~~~~~ 232 (252)
T PF02434_consen 223 --QVPISYHKFE 232 (252)
T ss_dssp ---SEEE-EEET
T ss_pred --CCCeecCCCc
Confidence 4559999996
No 5
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=7.8e-13 Score=139.66 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=125.4
Q ss_pred CCeEEEEEecCCcchHhHHHHHHHhhCCCCceEEEEccCCCCCCCCCCCCCCcEE-ecCCCCCccccCCCCcchhhHHHH
Q 011085 82 RRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIV-ISADTSKFPFTFPKGLRSAVRVAR 160 (494)
Q Consensus 82 ~s~IvFGIaTS~~~~~~R~~~vk~Ww~~~~~r~~vflD~~~~~~~~~~~~Lp~v~-Is~d~sr~~yt~~~g~~sa~Ri~r 160 (494)
...++.||+| +. +-+-+++.+.....+|+.+|.+...- +..+.... ++.. ..+.+++.+.
T Consensus 25 RErl~~aVmt--e~--tlA~a~NrT~ahhvprv~~F~~~~~i-----~~~~a~~~~vs~~----------d~r~~~~~s~ 85 (681)
T KOG3708|consen 25 RERLMAAVMT--ES--TLALAINRTLAHHVPRVHLFADSSRI-----DNDLAQLTNVSPY----------DLRGQKTHSM 85 (681)
T ss_pred HHHHHHHHHH--HH--HHHHHHHHHHHhhcceeEEeeccccc-----cccHhhccccCcc----------ccCccccHHH
Confidence 3568889999 21 44468999988889999999996531 11122222 2211 1245678888
Q ss_pred HHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcccccccccccceeeEEcHHHHHH
Q 011085 161 VVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARV 240 (494)
Q Consensus 161 iv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~Ll~~ 240 (494)
.++.++++.+ .+++||+++-||||++...|++++.+.+.++++|+|...++-. | -|.||.|+.||++++.+
T Consensus 86 vl~~l~~~~~--~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs-----~--rC~l~~G~LLS~s~l~~ 156 (681)
T KOG3708|consen 86 VLGLLFNMVH--NNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGS-----G--RCRLDTGMLLSQSLLHA 156 (681)
T ss_pred HHHHHHHhhc--cccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCcc-----C--ccccccceeecHHHHHH
Confidence 8888888877 8999999999999999999999999999999999996554221 2 38999999999999999
Q ss_pred HHHhhHHhhhhcccCCcchHHHHHHHHH-cCCccc
Q 011085 241 LAGALDSCLMRYAHLYGSDARVFSCLVE-LGVGLT 274 (494)
Q Consensus 241 L~~~~d~C~~~~~~~~ggD~~L~~Ci~~-lGV~Lt 274 (494)
|.++++.|.... ..--.|..|++||.. +||.++
T Consensus 157 lrnnle~C~~~~-lsad~d~~lgrCi~~At~v~C~ 190 (681)
T KOG3708|consen 157 LRNNLEGCRNDI-LSADPDEWLGRCIQDATGVGCK 190 (681)
T ss_pred HHhhHHHhhccc-ccCCcHHHHHHHHHHhhcCCcc
Confidence 999999997532 112258899999987 888865
No 6
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.03 E-value=4.3e-09 Score=109.84 Aligned_cols=207 Identities=22% Similarity=0.309 Sum_probs=126.9
Q ss_pred CCeEEEEEecCCcchHhHHHHHHHhhCCC-----CceEEEEccCCCCC------CCCCCCCCCcEEe-c-CCCCCccccC
Q 011085 82 RRHLLFSIASSSSSWPRRRSYVRLWYSPN-----STRALTFLDRAADS------SSAGDPSLPRIVI-S-ADTSKFPFTF 148 (494)
Q Consensus 82 ~s~IvFGIaTS~~~~~~R~~~vk~Ww~~~-----~~r~~vflD~~~~~------~~~~~~~Lp~v~I-s-~d~sr~~yt~ 148 (494)
..+|+.+|+|..+...+|...-++|...+ ..+.++++.....+ ..+....-..+.+ + .|+.. .
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty~-n--- 169 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTYF-N--- 169 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccchh-c---
Confidence 45799999999999988888778876654 24555555444321 0000111223332 2 23321 1
Q ss_pred CCCcchhhHHHHHHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccC-CCCCCEEEEecCCCCC----Ccccc---
Q 011085 149 PKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNSEGYE----QNAKH--- 220 (494)
Q Consensus 149 ~~g~~sa~Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~y-D~~~p~YIG~~se~~~----q~~~f--- 220 (494)
-......++..... ..|+++..+.+|||+||++++|++.|.+. ++++..|.|...+... ....|
T Consensus 170 -----ltlKtl~~l~w~~~---~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp 241 (349)
T KOG2287|consen 170 -----LTLKTLAILLWGVS---KCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVP 241 (349)
T ss_pred -----hHHHHHHHHHHHHh---cCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccC
Confidence 11222222222211 24899999999999999999999999999 9999999998764310 01111
Q ss_pred -------cccccccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHc-CCccccCCCCCCCCCCCCCcCcc
Q 011085 221 -------SFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVEL-GVGLTPEPGFHQLDMRGDMFGML 292 (494)
Q Consensus 221 -------g~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~l-GV~Lt~~pgfhQ~d~~gd~~G~~ 292 (494)
.|+-..+|+||+||+.+|++|... +. ......-.|+.++.|+++. |+.....+++...... +
T Consensus 242 ~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~---s~-~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~------~ 311 (349)
T KOG2287|consen 242 ESEYPCSVYPPYASGPGYVISGDAARRLLKA---SK-HLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLS------F 311 (349)
T ss_pred HHHCCCCCCCCcCCCceeEecHHHHHHHHHH---hc-CCCccchHHHHHHHHHHHhcCCCcccCccccccccc------C
Confidence 133334899999999999999873 22 1111223799999999985 8888777764332211 1
Q ss_pred ccCCCCCccccCCCCCCC
Q 011085 293 SAHPLSPLLSLHHLDAID 310 (494)
Q Consensus 293 ~s~~~~P~lSlHH~~~~~ 310 (494)
+.....-+++.|...+.+
T Consensus 312 ~~~~~~~~~~~H~~~p~e 329 (349)
T KOG2287|consen 312 DPCCYRDLLAVHRLSPNE 329 (349)
T ss_pred CCCcccceEEEecCCHHH
Confidence 111123467788776443
No 7
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=98.87 E-value=3.7e-08 Score=103.79 Aligned_cols=106 Identities=22% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCC--C-------cccc--c-----ccccccceeeEEcHH
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYE--Q-------NAKH--S-----FGMAFGGGGFAISHS 236 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~--q-------~~~f--g-----~~~A~GGaG~vLSr~ 236 (494)
.++++|+.+|||+|+++++|+..|++......+|+|....+.. + ...| | |.....|+||+||+.
T Consensus 235 ~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~D 314 (408)
T PLN03193 235 WDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKD 314 (408)
T ss_pred CCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHH
Confidence 6899999999999999999999998877666799999753210 0 0011 1 222247899999999
Q ss_pred HHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCCCCC
Q 011085 237 LARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQL 282 (494)
Q Consensus 237 Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgfhQ~ 282 (494)
+++.|...... ...| --.|+.+|.||..++|.-.+.+.|+..
T Consensus 315 La~~I~~n~~~-L~~y---~~EDV~vG~Wl~~L~V~~vdd~~fcc~ 356 (408)
T PLN03193 315 LASYISINQHV-LHKY---ANEDVSLGSWFIGLDVEHIDDRRLCCG 356 (408)
T ss_pred HHHHHHhChhh-hccc---CcchhhhhhHhccCCceeeecccccCC
Confidence 99999855432 2222 246999999998888888888888754
No 8
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=98.83 E-value=7.4e-08 Score=106.81 Aligned_cols=177 Identities=14% Similarity=0.200 Sum_probs=104.6
Q ss_pred CeEEEEEecCCcchHhHHHHHHHhhCCC-----CceEEEEccCCCCC-C----CCCCCCCCcEEec--CCCCCccccCCC
Q 011085 83 RHLLFSIASSSSSWPRRRSYVRLWYSPN-----STRALTFLDRAADS-S----SAGDPSLPRIVIS--ADTSKFPFTFPK 150 (494)
Q Consensus 83 s~IvFGIaTS~~~~~~R~~~vk~Ww~~~-----~~r~~vflD~~~~~-~----~~~~~~Lp~v~Is--~d~sr~~yt~~~ 150 (494)
-.++++|.|+.+.+++|...-++|.... ..+..+++....++ . ..-......+.+- .|. |.+
T Consensus 385 ~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~Ds----Y~N-- 458 (636)
T PLN03133 385 LDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDY----YSL-- 458 (636)
T ss_pred eEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeech----hhh--
Confidence 3699999999999888877777765431 12333444322111 0 0001112233322 122 111
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCC----cccc------
Q 011085 151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ----NAKH------ 220 (494)
Q Consensus 151 g~~sa~Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q----~~~f------ 220 (494)
..+....++... .+ .+++++++.+|||+|+++++|++.|.+.+..+.+|+|........ ...|
T Consensus 459 ---LTlKtl~~~~wa--~~--c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~e 531 (636)
T PLN03133 459 ---ITWKTLAICIFG--TE--VVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEE 531 (636)
T ss_pred ---hHHHHHHHHHHH--Hh--CCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHH
Confidence 122222222211 22 378999999999999999999999998888888999977532210 1111
Q ss_pred ----cccccccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHH---cCCccc
Q 011085 221 ----SFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVE---LGVGLT 274 (494)
Q Consensus 221 ----g~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~---lGV~Lt 274 (494)
.|+-..+|+||+||+.+++.|........ .+...-.|+.+|.|+++ .|++..
T Consensus 532 yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~--l~~f~lEDVyvGi~l~~l~k~gl~v~ 590 (636)
T PLN03133 532 WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGR--LKMFKLEDVAMGIWIAEMKKEGLEVK 590 (636)
T ss_pred CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcc--cCcCChhhHhHHHHHHHhcccCCCce
Confidence 13333489999999999999976543221 11123479999999975 355443
No 9
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=98.75 E-value=1.5e-07 Score=89.82 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccC--CCCCCEEEEecCCCCC----Ccccc----------
Q 011085 157 RVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGYE----QNAKH---------- 220 (494)
Q Consensus 157 Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~y--D~~~p~YIG~~se~~~----q~~~f---------- 220 (494)
.....++.+.++ .+++++++++|||+|+++++|...|.+. +..+..+.|....... +...|
T Consensus 66 K~~~~~~w~~~~---c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~ 142 (195)
T PF01762_consen 66 KTLAGLKWASKH---CPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDD 142 (195)
T ss_pred HHHHHHHHHHhh---CCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccc
Confidence 333444444433 2789999999999999999999999987 7777888787753321 11111
Q ss_pred cc-cccccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCC
Q 011085 221 SF-GMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 221 g~-~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
-| .|| .|+|++||+.+++.|..... ..+...-.|+.+|.|+.++||+.++.|
T Consensus 143 ~yP~y~-~G~~yvls~~~v~~i~~~~~----~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 143 YYPPYC-SGGGYVLSSDVVKRIYKASS----HTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred cCCCcC-CCCeEEecHHHHHHHHHHhh----cCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 01 355 58899999999999987522 222344579999999999999887654
No 10
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=98.41 E-value=2.6e-06 Score=88.96 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=83.1
Q ss_pred CCCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcccccccccccceeeEEcHHHHHHHHHhhHHh---
Q 011085 172 KAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSC--- 248 (494)
Q Consensus 172 ~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~Ll~~L~~~~d~C--- 248 (494)
.|++++++.+|||+|+..++++..| +..+++.+|+|...........-.-.| .+|.|++||+.+++.|.......
T Consensus 197 cP~a~YImKgDDDvFVrVp~lL~~L-r~~prr~LY~G~v~~~~~p~Rd~~PpY-~~G~gYvLSrDVA~~Lvs~~pl~rL~ 274 (382)
T PTZ00210 197 FPNVSYIVKGDDDIFIRVPKYLADL-RVMPRHGLYMGRYNYYNRIWRRNQLTY-VNGYCITLSRDTAQAIISYKPLERLV 274 (382)
T ss_pred CCCCCeEEEcCCCeEeeHHHHHHHH-hhCCCCceEEEeeCCCCccccCCCCCc-cccceeeccHHHHHHHHhhChHhHhh
Confidence 3899999999999999999999999 456777899998775432111101124 48899999999999998642211
Q ss_pred --------hhhccc--CCcchHHHHHHHHH-cC-Ccc-ccCCCCCCC-CCCCCCcCccccCCC-CCccccCCCCCCC
Q 011085 249 --------LMRYAH--LYGSDARVFSCLVE-LG-VGL-TPEPGFHQL-DMRGDMFGMLSAHPL-SPLLSLHHLDAID 310 (494)
Q Consensus 249 --------~~~~~~--~~ggD~~L~~Ci~~-lG-V~L-t~~pgfhQ~-d~~gd~~G~~~s~~~-~P~lSlHH~~~~~ 310 (494)
.+.|.. ...+|.++|.-|.. +. -++ +..++.+-+ |.+. |... +++ .-.|-+||++..+
T Consensus 275 ~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~---~~~~-~~v~~~sVvvHhike~d 347 (382)
T PTZ00210 275 NMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGK---FGVR-KSVRNMSVVIHHIQEAD 347 (382)
T ss_pred cCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCC---CCCc-cccccceEEEEecCHHH
Confidence 011211 23479999999964 33 233 344443322 3322 1111 111 2347889988654
No 11
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.07 E-value=2.9e-05 Score=77.31 Aligned_cols=102 Identities=24% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCC----------CCc-------ccccccccccceeeEEcH
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY----------EQN-------AKHSFGMAFGGGGFAISH 235 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~----------~q~-------~~fg~~~A~GGaG~vLSr 235 (494)
-+.+.||.+|||+|+.++.|...|+++-....+|||-...+. ++- .+| ..|+ |+|++||+
T Consensus 107 ~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkfg~~g~Yf--rhA~-G~~YvlS~ 183 (274)
T KOG2288|consen 107 WDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKFGDNGNYF--RHAT-GGGYVLSK 183 (274)
T ss_pred ccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhcCcccccc--hhcc-CceEEeeH
Confidence 579999999999999999999999999888889999864221 000 033 2354 68999999
Q ss_pred HHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCCCC
Q 011085 236 SLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQ 281 (494)
Q Consensus 236 ~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgfhQ 281 (494)
.|+.-|.-+.+- +..|. ..|+-||.-+.-+.|.-.+.|.++.
T Consensus 184 dLa~yi~in~~l-L~~y~---nEDVSlGaW~~gldV~h~dd~rlC~ 225 (274)
T KOG2288|consen 184 DLATYISINRQL-LHKYA---NEDVSLGAWMIGLDVEHVDDPRLCC 225 (274)
T ss_pred HHHHHHHHhHHH-HHhhc---cCCcccceeeeeeeeeEecCCcccc
Confidence 999988765433 33332 2588888877555555445555553
No 12
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.58 E-value=0.21 Score=44.08 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCC-EEEEecCCCCCCcccccccccccceeeEEcHHHHHHHHHhhHHhhhh
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p-~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~ 251 (494)
-+.+|++++|||.++.++.|.+++..+..... ..+|.. ..|+++++++.+++++... +...
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~-- 134 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGF-DEDF-- 134 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCC-Chhh--
Confidence 36899999999999888888887775543332 233332 4789999999999886532 2211
Q ss_pred cccCCcchHHHHHHHHHcCCccccCC
Q 011085 252 YAHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 252 ~~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
..++.|..+...+.+.|.++...|
T Consensus 135 --~~~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 135 --FLYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred --hccccHHHHHHHHHHcCCeEEEcc
Confidence 125568888888887787765544
No 13
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=92.14 E-value=0.42 Score=44.82 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=58.9
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccC-CCCCCEEEEecCCCCCCcccccccccccceeeEEcHHHHHHHHHhhHHhhhh
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~y-D~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~ 251 (494)
...+|++++|+|+.+.++-|.+++..+ ++.-....|. ...|+++++.+.+++++... +.
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~---------------~~~g~~~~~r~~~~~~~ggf-~~---- 144 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL---------------CAFGKSMALRREVLDAIGGF-EA---- 144 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee---------------cccCceeeeEHHHHHhccCh-HH----
Confidence 468999999999998888887777765 3332222222 24678999999999987643 21
Q ss_pred cccCCcchHHHHHHHHHcCCccccCCC
Q 011085 252 YAHLYGSDARVFSCLVELGVGLTPEPG 278 (494)
Q Consensus 252 ~~~~~ggD~~L~~Ci~~lGV~Lt~~pg 278 (494)
.....+.|..+..-+.+.|......|.
T Consensus 145 ~~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 145 FADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred HhHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 111235788888888888877655444
No 14
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=91.37 E-value=11 Score=39.91 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=57.8
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCC-CEEEEecC---CCCCC--------------------ccccc-cccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDR-WFYVGSNS---EGYEQ--------------------NAKHS-FGMAFG 227 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~-p~YIG~~s---e~~~q--------------------~~~fg-~~~A~G 227 (494)
++.+|+++.|+|+.+.++.|.++++.+.... .+.-|.+. ++... +...+ ...+ -
T Consensus 132 ~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 210 (384)
T TIGR03469 132 PPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAA-A 210 (384)
T ss_pred CCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceee-c
Confidence 4589999999999998888877777654322 22222221 11000 00000 0012 3
Q ss_pred ceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccc
Q 011085 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (494)
Q Consensus 228 GaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt 274 (494)
|+++++++.+.+++-..-+.. ....+|..|+.-+.+.|.++.
T Consensus 211 G~~~lirr~~~~~vGGf~~~~-----~~~~ED~~L~~r~~~~G~~v~ 252 (384)
T TIGR03469 211 GGCILIRREALERIGGIAAIR-----GALIDDCTLAAAVKRSGGRIW 252 (384)
T ss_pred ceEEEEEHHHHHHcCCHHHHh-----hCcccHHHHHHHHHHcCCcEE
Confidence 678999999999976542211 124679999999998875544
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=90.68 E-value=0.88 Score=43.09 Aligned_cols=105 Identities=23% Similarity=0.261 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccC-CCCCCEEEEecCCCCC---------------------Ccc
Q 011085 161 VVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNSEGYE---------------------QNA 218 (494)
Q Consensus 161 iv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~y-D~~~p~YIG~~se~~~---------------------q~~ 218 (494)
.+.+.++. -..+|++++|||+.+.++-|.++++.+ +++-...-|...-... ...
T Consensus 77 a~n~~~~~----~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (228)
T PF13641_consen 77 ALNEALAA----ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRR 152 (228)
T ss_dssp HHHHHHHH-------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B
T ss_pred HHHHHHHh----cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhc
Confidence 44555544 248899999999999888888888877 4443333333210000 001
Q ss_pred cccccccccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCC
Q 011085 219 KHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 219 ~fg~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
..+. ....|+|+++.+.+++++... +. ...++|..+..-+...|.++...|
T Consensus 153 ~~~~-~~~~G~~~~~rr~~~~~~g~f-d~------~~~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 153 ALGV-AFLSGSGMLFRRSALEEVGGF-DP------FILGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp -----S-B--TEEEEEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEEEE
T ss_pred ccce-eeccCcEEEEEHHHHHHhCCC-CC------CCcccHHHHHHHHHHCCCcEEEEC
Confidence 1121 223579999999999998642 22 235689989888888887765544
No 16
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.01 E-value=4.7 Score=42.57 Aligned_cols=99 Identities=15% Similarity=0.037 Sum_probs=62.5
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccC--CCCCCEEEEecCCCC-------CCc--------------ccccccccccce
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGY-------EQN--------------AKHSFGMAFGGG 229 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~y--D~~~p~YIG~~se~~-------~q~--------------~~fg~~~A~GGa 229 (494)
.+.+|++++|+|+...++-|.++++.+ |++-...-|.+.-.. .+. ..+|..++.+|+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV 212 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecce
Confidence 468999999999999888888888877 333222333221000 000 111222345688
Q ss_pred eeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCC
Q 011085 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (494)
Q Consensus 230 G~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pg 278 (494)
+.++.+.+++++... +. ...++|..++.-+.+.|.++...|.
T Consensus 213 ~~~~rr~~l~~vgg~-~~------~~~~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 213 ITAFRKSALHEVGYW-ST------DMITEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred eeeeeHHHHHHhCCC-CC------CcccchHHHHHHHHHcCCeEEeccc
Confidence 889999998886432 11 1356799888888888877765553
No 17
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=89.19 E-value=11 Score=39.61 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=62.1
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC-CCCCEEEEecCCCCCCc------------ccc----------c-ccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGYEQN------------AKH----------S-FGMAFGG 228 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD-~~~p~YIG~~se~~~q~------------~~f----------g-~~~A~GG 228 (494)
...+|+++.|+|+.+.++-|.++++.+. ++-.. ++......... ..| + ..++ .|
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~-V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~G 202 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGL-VTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFC-FG 202 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcce-EeccccCCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCccc-cC
Confidence 4689999999999999988888888774 33332 22222111000 000 1 0122 46
Q ss_pred eeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCC
Q 011085 229 GGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (494)
Q Consensus 229 aG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pg 278 (494)
+.+++.|.+++++... +.- ....++|..|+.=+.+.|.++...+.
T Consensus 203 ~~~a~RR~~l~~iGGf-~~~----~~~~~ED~~l~~~i~~~G~~v~~~~~ 247 (373)
T TIGR03472 203 ATMALRRATLEAIGGL-AAL----AHHLADDYWLGELVRALGLRVVLAPV 247 (373)
T ss_pred hhhheeHHHHHHcCCh-HHh----cccchHHHHHHHHHHHcCCeEEecch
Confidence 7788999999887654 211 12245799999999988877765544
No 18
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.00 E-value=1.7 Score=41.22 Aligned_cols=99 Identities=16% Similarity=0.022 Sum_probs=56.1
Q ss_pred CCccEEEEEcCCceeehhHHHHHh---ccCCCCCCE-EEEecCCCC-C-------Cccc------------ccccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTL---SKYDDDRWF-YVGSNSEGY-E-------QNAK------------HSFGMAFGG 228 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~L---s~yD~~~p~-YIG~~se~~-~-------q~~~------------fg~~~A~GG 228 (494)
.+.+|++++|||+.+.++-|.+++ ..+..+... .+|...... . .... ........|
T Consensus 74 ~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T cd02526 74 NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLIT 153 (237)
T ss_pred CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeec
Confidence 378999999999999887777774 333323222 222221100 0 0000 000012236
Q ss_pred eeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccC
Q 011085 229 GGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPE 276 (494)
Q Consensus 229 aG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~ 276 (494)
+|+++++.+++++...-+.. ...+.|..+..-+.+.|..+...
T Consensus 154 ~~~~~rr~~~~~~ggfd~~~-----~~~~eD~d~~~r~~~~G~~~~~~ 196 (237)
T cd02526 154 SGSLISLEALEKVGGFDEDL-----FIDYVDTEWCLRARSKGYKIYVV 196 (237)
T ss_pred cceEEcHHHHHHhCCCCHHH-----cCccchHHHHHHHHHcCCcEEEE
Confidence 78899999998876432221 12346888888887778665443
No 19
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=86.37 E-value=2.8 Score=39.63 Aligned_cols=90 Identities=24% Similarity=0.326 Sum_probs=51.4
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCCccEEEEEcCCceeehh---HHHHHhccCCCCCCEEEEec-----------------
Q 011085 151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVD---NLVKTLSKYDDDRWFYVGSN----------------- 210 (494)
Q Consensus 151 g~~sa~Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~---nLv~~Ls~yD~~~p~YIG~~----------------- 210 (494)
..-|+..+..+.+++++ .+.++.++.|||.++..+ .|.+.++.-+...-++.|..
T Consensus 67 EiGC~lSH~~~w~~~v~-----~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 141 (200)
T PF01755_consen 67 EIGCALSHIKAWQRIVD-----SGLEYALILEDDVIFDPDFKEFLEEILSHIPDWDFLRLGGWKDNSYSPGDIFLSRLST 141 (200)
T ss_pred eEeehhhHHHHHHHHHH-----cCCCeEEEEeccccccccHHHHHHHHHhhcccccchhhccccccccccccccceeeee
Confidence 33456666677777653 468999999999988732 33333333222222233111
Q ss_pred --CCC--CCCc---------ccccccccccceeeEEcHHHHHHHHHhh
Q 011085 211 --SEG--YEQN---------AKHSFGMAFGGGGFAISHSLARVLAGAL 245 (494)
Q Consensus 211 --se~--~~q~---------~~fg~~~A~GGaG~vLSr~Ll~~L~~~~ 245 (494)
... .... ........+|.+||+||+..|++|....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~ 189 (200)
T PF01755_consen 142 FLSRSKRYKRKPIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEAS 189 (200)
T ss_pred hhhhhhhcccCcccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhC
Confidence 000 0000 0001124568899999999999998753
No 20
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.60 E-value=2.7 Score=39.04 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC-CCCCEEEEecCCCCCCcccccccccccceeeEEcHHHHHHHHHhhHHhhhh
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD-~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~ 251 (494)
.+.+|++++|||+.+..+.|.++++.+. +.-.++.|..... . + .++|+++.+.+++++... +. .
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---~---~-----~~~~~~~~~~~~~~~g~~-~~---~ 142 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP---D---G-----SFVGVLISRRVVEKIGLP-DK---E 142 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC---C---C-----ceEEEEEeHHHHHHhCCC-Ch---h
Confidence 4789999999999998877777777665 3333433332211 0 1 457889999999877422 11 1
Q ss_pred cccCCcchHHHHHHHHHcCCccccCCC
Q 011085 252 YAHLYGSDARVFSCLVELGVGLTPEPG 278 (494)
Q Consensus 252 ~~~~~ggD~~L~~Ci~~lGV~Lt~~pg 278 (494)
+ ..++.|..+..=+.+.|..+ ..|.
T Consensus 143 ~-~~~~eD~~~~~r~~~~G~~i-~~~~ 167 (202)
T cd04185 143 F-FIWGDDTEYTLRASKAGPGI-YVPD 167 (202)
T ss_pred h-hccchHHHHHHHHHHcCCcE-Eecc
Confidence 2 23567888887777778666 4443
No 21
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=85.03 E-value=2.6 Score=37.61 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcccccccccccceeeEE
Q 011085 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAI 233 (494)
Q Consensus 154 sa~Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vL 233 (494)
++..+..+.+++.+ .+.+|.++.|||..+..+ |.+|++|
T Consensus 67 C~lSH~~~w~~~~~-----~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~v 105 (128)
T cd06532 67 CFLSHYKLWQKIVE-----SNLEYALILEDDAILDPD------------------------------------GTAGYLV 105 (128)
T ss_pred HHHHHHHHHHHHHH-----cCCCeEEEEccCcEECCC------------------------------------CceEEEe
Confidence 44555566666653 467899999999987765 7789999
Q ss_pred cHHHHHHHHHhh
Q 011085 234 SHSLARVLAGAL 245 (494)
Q Consensus 234 Sr~Ll~~L~~~~ 245 (494)
|+.++++|....
T Consensus 106 s~~~A~~ll~~~ 117 (128)
T cd06532 106 SRKGAKKLLAAL 117 (128)
T ss_pred CHHHHHHHHHhC
Confidence 999999998753
No 22
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=84.69 E-value=1.9 Score=40.34 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=42.0
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecC----CCCC-----Cc--------------cccccccccccee
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNS----EGYE-----QN--------------AKHSFGMAFGGGG 230 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~s----e~~~-----q~--------------~~fg~~~A~GGaG 230 (494)
..+|++++|.|+.+.++-|.+++..+...+--.++... .... +. ..+| .+..||.|
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~G~~ 167 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTG-TVGLGGNG 167 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cEEECCee
Confidence 45799999999998888887766555322222222221 1100 00 1123 24579999
Q ss_pred eEEcHHHHHHH
Q 011085 231 FAISHSLARVL 241 (494)
Q Consensus 231 ~vLSr~Ll~~L 241 (494)
.++++.+++++
T Consensus 168 ~~~r~~~l~~v 178 (191)
T cd06436 168 QFMRLSALDGL 178 (191)
T ss_pred EEEeHHHHHHh
Confidence 99999999988
No 23
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=84.53 E-value=4.4 Score=38.22 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC-CCCC----EEEEecCCCCCCc-----cc--------c-cccccccceeeEE
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRW----FYVGSNSEGYEQN-----AK--------H-SFGMAFGGGGFAI 233 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD-~~~p----~YIG~~se~~~q~-----~~--------f-g~~~A~GGaG~vL 233 (494)
...+++++.|+|+.+.++-|.++++.+- |+-. +|.+.+.++.... .. + +..++ -|+.+++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~G~~m~~ 108 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFA-WGGSMAF 108 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCce-ecceeee
Confidence 5799999999999999988888887663 4433 3444443322100 00 0 12233 4677899
Q ss_pred cHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCC
Q 011085 234 SHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 234 Sr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
.+.+++++... +. .....+.|..|++.+.+.|.++...+
T Consensus 109 rr~~L~~~GG~-~~----l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 109 RREALEEIGGF-EA----LADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred EHHHHHHcccH-HH----HhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 99999876422 11 11235679999999999998876665
No 24
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.38 E-value=23 Score=38.09 Aligned_cols=99 Identities=12% Similarity=-0.045 Sum_probs=63.6
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccC--CCCCCEEEEecCCCC-------CCc--------------ccccccccccce
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGY-------EQN--------------AKHSFGMAFGGG 229 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~y--D~~~p~YIG~~se~~-------~q~--------------~~fg~~~A~GGa 229 (494)
.+.++++++|+|+...++.|.++++.+ |++--..-|.+.... .+. ..+|-.++.+|+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~ 233 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGV 233 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCc
Confidence 468999999999998888888887766 443333333321100 000 112223456788
Q ss_pred eeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCC
Q 011085 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (494)
Q Consensus 230 G~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pg 278 (494)
+.++.+.+++++...-+ ...++|..++.-+...|..+..+|.
T Consensus 234 ~~~~rr~al~~vGg~~~-------~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 234 VAAFRRRALADVGYWSP-------DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred eeEEEHHHHHHcCCCCC-------CcccccHHHHHHHHHcCCeEEEeec
Confidence 88999999888643211 1346799999999888877766654
No 25
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.84 E-value=4.1 Score=38.12 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=55.5
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC-CCCCEEEEecCCCCCC--------------------cccccccccccceee
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGYEQ--------------------NAKHSFGMAFGGGGF 231 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD-~~~p~YIG~~se~~~q--------------------~~~fg~~~A~GGaG~ 231 (494)
...+|++++|+|+.+.++-|.+++..+. +....+.|........ ...++..+..-|+++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM 160 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence 4689999999999888877777777554 4444566654321100 001122233457889
Q ss_pred EEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCC
Q 011085 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGV 271 (494)
Q Consensus 232 vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV 271 (494)
++++.+++++-.. +. .....++|..+..-+...|.
T Consensus 161 ~~rr~~~~~~ggf-~~----~~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 161 AYRKEAFFEVGGF-EG----NDHIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEHHHHHHhcCC-cc----ccccccCCHHHHHHHHHhCC
Confidence 9999999987543 11 01123466666554444454
No 26
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=82.50 E-value=2.1 Score=39.71 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=57.6
Q ss_pred EEEEEcCCceeehhHHHHHhccCCCCCCEEEE-ec-C----CCC---CCc--------------ccccccccccceeeEE
Q 011085 177 WFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVG-SN-S----EGY---EQN--------------AKHSFGMAFGGGGFAI 233 (494)
Q Consensus 177 Wfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG-~~-s----e~~---~q~--------------~~fg~~~A~GGaG~vL 233 (494)
|++++|+||.+..+-|.+.+..++ +..+-++ .+ . ++. .+. ..+|.....-|+|.++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 79 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLF 79 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceee
Confidence 889999999999888888887776 2222111 11 1 110 000 0122223346999999
Q ss_pred cHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCC
Q 011085 234 SHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 234 Sr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
++.+++++...-+ ....++|..++.=+.+.|.++...|
T Consensus 80 r~~~l~~vg~~~~------~~~~~ED~~l~~~l~~~G~~~~~~~ 117 (193)
T PF13632_consen 80 RREALREVGGFDD------PFSIGEDMDLGFRLRRAGYRIVYVP 117 (193)
T ss_pred eHHHHHHhCcccc------cccccchHHHHHHHHHCCCEEEEec
Confidence 9999998763310 1235678888877777786665443
No 27
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=82.36 E-value=2.2 Score=40.23 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCC-EEEEecC-C-CCCC----c------------------cccccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSNS-E-GYEQ----N------------------AKHSFGMAFG 227 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p-~YIG~~s-e-~~~q----~------------------~~fg~~~A~G 227 (494)
.+.+|++++|+|+++.++-|.++++.+..+.. -.++... . .... . ..++. ....
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGA-AFCC 161 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCC-ceec
Confidence 36899999999999998888888887754332 2333221 0 0000 0 00111 2235
Q ss_pred ceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccc
Q 011085 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (494)
Q Consensus 228 GaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt 274 (494)
|+|.++++.+++++... ++ ..++.|..+..=+...|..+.
T Consensus 162 g~~~~~r~~~~~~ig~~-~~------~~~~eD~~l~~r~~~~g~~i~ 201 (234)
T cd06421 162 GSGAVVRREALDEIGGF-PT------DSVTEDLATSLRLHAKGWRSV 201 (234)
T ss_pred CceeeEeHHHHHHhCCC-Cc------cceeccHHHHHHHHHcCceEE
Confidence 78999999999887542 21 135678888776666665543
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=81.72 E-value=5.4 Score=38.37 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=24.4
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCCCC
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDR 203 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~ 203 (494)
..+|++++|+|+++..+-|.++++.+...+
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 359999999999999877888888875333
No 29
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=80.87 E-value=3.9 Score=40.59 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD 200 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD 200 (494)
.+.+|++++|||+.+..+.|.++++.++
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 3689999999999998777666666554
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=79.51 E-value=4.7 Score=38.19 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD 200 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD 200 (494)
.+.+|++++|||+.+.++.|.+++..++
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhcc
Confidence 3689999999999999999999998886
No 31
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=79.11 E-value=3.1 Score=39.74 Aligned_cols=97 Identities=15% Similarity=0.014 Sum_probs=55.2
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCC--CC-----cc----------------cccccccccce
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY--EQ-----NA----------------KHSFGMAFGGG 229 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~--~q-----~~----------------~fg~~~A~GGa 229 (494)
...+|++++|+|+.+.++-|.+++..+...+--.++...+.. .. .. ..+..+...|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT 165 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence 468999999999999888887755555333322333321100 00 00 00101123456
Q ss_pred eeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccC
Q 011085 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPE 276 (494)
Q Consensus 230 G~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~ 276 (494)
+.++.+.+++++... +. ..+..|..|..-+...|.++...
T Consensus 166 ~~~~rr~~~~~vgg~-~~------~~~~ED~~l~~rl~~~G~~~~~~ 205 (232)
T cd06437 166 AGVWRKECIEDAGGW-NH------DTLTEDLDLSYRAQLKGWKFVYL 205 (232)
T ss_pred hhhhhHHHHHHhCCC-CC------CcchhhHHHHHHHHHCCCeEEEe
Confidence 667888887776432 21 13567888888887777665443
No 32
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=78.37 E-value=3.2 Score=38.30 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=29.3
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEec
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSN 210 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~ 210 (494)
.+.+|++++|.|+.+.++-|.+++..+........|..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 46899999999999998888888877755445555543
No 33
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=78.02 E-value=2.5 Score=40.87 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=58.2
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCCC--CCEEEEecCCCCCC--c---------------------ccccccccccc
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDD--RWFYVGSNSEGYEQ--N---------------------AKHSFGMAFGG 228 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~--~p~YIG~~se~~~q--~---------------------~~fg~~~A~GG 228 (494)
..+|++++|+|+.+.++.|.++++.+... +-.++|........ . ...+.....+|
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGG 163 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 46999999999999988888888777532 22344433211100 0 00122234578
Q ss_pred eeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCC
Q 011085 229 GGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 229 aG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
+++++++.+++++... +. ..++.|..+..=+.+.|..+...+
T Consensus 164 ~~~~~rr~~~~~vgg~-~~------~~~~eD~~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 164 TSNHFRTDVLRELGGW-DP------FNVTEDADLGLRLARAGYRTGVLN 205 (241)
T ss_pred chHHhhHHHHHHcCCC-Cc------ccchhhHHHHHHHHHCCceEEEec
Confidence 8888999988887543 11 124567776666666666554433
No 34
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=77.72 E-value=1.9 Score=47.55 Aligned_cols=66 Identities=23% Similarity=0.422 Sum_probs=41.4
Q ss_pred hhHHhhhhcccCCcchHHHHHHHHH-cCCccccCC-C--CCCCCCC-CCCcCccccCCCCCccccCCCCCCC
Q 011085 244 ALDSCLMRYAHLYGSDARVFSCLVE-LGVGLTPEP-G--FHQLDMR-GDMFGMLSAHPLSPLLSLHHLDAID 310 (494)
Q Consensus 244 ~~d~C~~~~~~~~ggD~~L~~Ci~~-lGV~Lt~~p-g--fhQ~d~~-gd~~G~~~s~~~~P~lSlHH~~~~~ 310 (494)
+++.|.+...+ ...|..||+||.+ +||++|++. + +|..... .+..+.++...+.-.+|+|+.+...
T Consensus 1 hl~~C~~~~~s-~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p~ 71 (499)
T PF05679_consen 1 HLDWCLKNIYS-NHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSPA 71 (499)
T ss_pred ChhHHhhhcCC-CCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCHH
Confidence 36789875422 2369999999997 999998765 1 1112222 2223444443456679999988653
No 35
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=76.71 E-value=65 Score=33.72 Aligned_cols=100 Identities=24% Similarity=0.154 Sum_probs=69.2
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCE-EEEecC-------CCC-C--C--------------ccccccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWF-YVGSNS-------EGY-E--Q--------------NAKHSFGMAFG 227 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~-YIG~~s-------e~~-~--q--------------~~~fg~~~A~G 227 (494)
...+++++.|.||....+-|.++++.++...-. +.|.+. +.. . + ....|.....+
T Consensus 136 ~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (439)
T COG1215 136 AKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLS 215 (439)
T ss_pred cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEc
Confidence 459999999999999999999999998755443 666652 011 0 0 01123235568
Q ss_pred ceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCC
Q 011085 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGF 279 (494)
Q Consensus 228 GaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgf 279 (494)
|++.++-+++++++...... ..++|..++.=+...|......+.-
T Consensus 216 G~~~~~rr~aL~~~g~~~~~-------~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 216 GSSSAFRRSALEEVGGWLED-------TITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred ceeeeEEHHHHHHhCCCCCC-------ceeccHHHHHHHHHCCCeEEEeecc
Confidence 99999999999987733222 2457889998888888776655443
No 36
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=75.36 E-value=18 Score=33.92 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=63.0
Q ss_pred CccEEEEEcCCceeehhHHHHHhcc-CCCCCCEEEEecCCCCCCc----cc----------------cccccc-ccceee
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNSEGYEQN----AK----------------HSFGMA-FGGGGF 231 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~-yD~~~p~YIG~~se~~~q~----~~----------------fg~~~A-~GGaG~ 231 (494)
..+|++++|+|..+.++.|.++++. .+....+.+|......... .. .+..+. ...+..
T Consensus 82 ~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~ 161 (211)
T cd04188 82 RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFK 161 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCce
Confidence 3599999999999998888888877 4666678888765322110 00 011111 123456
Q ss_pred EEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCCC
Q 011085 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFH 280 (494)
Q Consensus 232 vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgfh 280 (494)
++++.+++++.+... ...|+.|..+..-+.+.|.++...|--+
T Consensus 162 ~~~r~~~~~~~~~~~------~~~~~~d~el~~r~~~~g~~~~~vpi~~ 204 (211)
T cd04188 162 LFTRDAARRLFPRLH------LERWAFDVELLVLARRLGYPIEEVPVRW 204 (211)
T ss_pred eEcHHHHHHHHhhhh------ccceEeeHHHHHHHHHcCCeEEEcCcce
Confidence 899999988763311 1235568877777777787766655433
No 37
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=75.21 E-value=14 Score=35.20 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCc-------ccccc---------------ccccccee
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQN-------AKHSF---------------GMAFGGGG 230 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~-------~~fg~---------------~~A~GGaG 230 (494)
.+.+|++++|+|+.+.++.|.++++.+...+--.++.+....... ..+.+ .....|++
T Consensus 83 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (236)
T cd06435 83 PDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTM 162 (236)
T ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecce
Confidence 357999999999998888888888777532322343332110000 00000 01124677
Q ss_pred eEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccC
Q 011085 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPE 276 (494)
Q Consensus 231 ~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~ 276 (494)
.++++.+++++.. ++.+ .+++|..+..=+.+.|.++...
T Consensus 163 ~~~rr~~~~~iGg-f~~~------~~~eD~dl~~r~~~~G~~~~~~ 201 (236)
T cd06435 163 CLIRRSALDDVGG-WDEW------CITEDSELGLRMHEAGYIGVYV 201 (236)
T ss_pred EEEEHHHHHHhCC-CCCc------cccchHHHHHHHHHCCcEEEEc
Confidence 8999999998754 2322 2467888888777777665443
No 38
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=73.60 E-value=11 Score=33.97 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=55.9
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcccccccccccceeeEEcHHHHHHHHHhhHHhhhhc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRY 252 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~ 252 (494)
...+|++++|+|+.+..+-|.++++..++. ....|........... ....|+++++.+..+.++.. ++.+.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~gg-f~~~~--- 148 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEKLTE----RGIRGCNMSFWKKDLLAVNG-FDEEF--- 148 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccccce----eEeccceEEEEHHHHHHhCC-CCccc---
Confidence 457899999999988877777777766433 3444554422111111 24567888898888875443 33322
Q ss_pred ccCC-cchHHHHHHHHHcCCcc
Q 011085 253 AHLY-GSDARVFSCLVELGVGL 273 (494)
Q Consensus 253 ~~~~-ggD~~L~~Ci~~lGV~L 273 (494)
..+ +.|..+..=+.+.|+.+
T Consensus 149 -~~~~~eD~~l~~r~~~~g~~~ 169 (182)
T cd06420 149 -TGWGGEDSELVARLLNSGIKF 169 (182)
T ss_pred -ccCCcchHHHHHHHHHcCCcE
Confidence 123 46887777777777443
No 39
>PLN03181 glycosyltransferase; Provisional
Probab=71.87 E-value=1.2e+02 Score=33.18 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=30.2
Q ss_pred chhhHHHHHHHHHHHhcCCCCCccEEEEEcCCceeehhHHHHHhccCCC
Q 011085 153 RSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDD 201 (494)
Q Consensus 153 ~sa~Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~ 201 (494)
+..|.-..+++.+...+ |+++||..+|-||+|--.++.--|.+|+.
T Consensus 180 p~~WaKipalRaAM~a~---PeAEWfWWLDsDALIMNp~~sLPl~ry~~ 225 (453)
T PLN03181 180 NSYWAKLPVVRAAMLAH---PEAEWIWWVDSDAVFTDMDFKLPLHRYRD 225 (453)
T ss_pred chhhhHHHHHHHHHHHC---CCceEEEEecCCceeecCCCCCCHhhcCC
Confidence 45576667777665433 89999999999998752222212556643
No 40
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=70.57 E-value=8.7 Score=31.91 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=18.6
Q ss_pred CCccEEEEEcCCceeehh----HHHHHh
Q 011085 173 AGVRWFVFGDDDTVFFVD----NLVKTL 196 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~----nLv~~L 196 (494)
.+.+|.+++|-|-|+..+ +|.++|
T Consensus 70 ~~~dWvl~~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 70 FDADWVLFLDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred CCCCEEEEEeeeEEEecCCCCCCHHHhC
Confidence 578999999999999843 355543
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=70.23 E-value=5.5 Score=36.76 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=53.3
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC--CCCCEEEEecCC---CC---CCcc---------ccc-ccccccceeeEEc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD--DDRWFYVGSNSE---GY---EQNA---------KHS-FGMAFGGGGFAIS 234 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD--~~~p~YIG~~se---~~---~q~~---------~fg-~~~A~GGaG~vLS 234 (494)
.+.+|++++|+|.++.++.|.+++..+. ++-.++.|.... .. .... .+. ......|+++++.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRRSPFNHPTVMFR 158 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCHHHHHHHhccCCCCCChHHhhh
Confidence 4689999999999988888877777653 222333333211 00 0000 000 0112345566777
Q ss_pred HHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCcccc
Q 011085 235 HSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (494)
Q Consensus 235 r~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~ 275 (494)
+.+++++... +. ..++.|..+...+...|.++..
T Consensus 159 r~~~~~~g~~-~~------~~~~eD~~~~~r~~~~g~~~~~ 192 (201)
T cd04195 159 KSKVLAVGGY-QD------LPLVEDYALWARMLANGARFAN 192 (201)
T ss_pred HHHHHHcCCc-CC------CCCchHHHHHHHHHHcCCceec
Confidence 7776654321 11 1356788888888776655443
No 42
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=70.08 E-value=20 Score=32.97 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=53.0
Q ss_pred CCccEEEEEcCCceeehhHHHHHhcc-CCCCCCEEEEecC----CCCC--Ccccc---c-----------ccccccceee
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNS----EGYE--QNAKH---S-----------FGMAFGGGGF 231 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~-yD~~~p~YIG~~s----e~~~--q~~~f---g-----------~~~A~GGaG~ 231 (494)
.+.+|++++|+|.++.++.|.++++. ........++... +... ....+ . ......|+++
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTM 157 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCcee
Confidence 57999999999998888878777776 3333333444321 1100 00000 0 0123468899
Q ss_pred EEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHc
Q 011085 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVEL 269 (494)
Q Consensus 232 vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~l 269 (494)
++.+.+++++...... . .+..|..+...+...
T Consensus 158 ~~r~~~~~~~~~~~~~----~--~~~~D~~~~~~~~~~ 189 (214)
T cd04196 158 AFNRELLELALPFPDA----D--VIMHDWWLALLASAF 189 (214)
T ss_pred eEEHHHHHhhcccccc----c--cccchHHHHHHHHHc
Confidence 9999999887643111 0 244677766666553
No 43
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=69.66 E-value=48 Score=38.30 Aligned_cols=94 Identities=19% Similarity=0.110 Sum_probs=58.6
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCC-EEEEecCCCC-----CC----------------------cccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSNSEGY-----EQ----------------------NAKHSFGM 224 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p-~YIG~~se~~-----~q----------------------~~~fg~~~ 224 (494)
.+.+|+++.|.|+....+-|.+.+..+..+.. -.++.+.... .. ...++- .
T Consensus 227 a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~-~ 305 (713)
T TIGR03030 227 TDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNA-A 305 (713)
T ss_pred cCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCC-e
Confidence 35799999999999988888888877732222 2333221000 00 001111 1
Q ss_pred cccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccc
Q 011085 225 AFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (494)
Q Consensus 225 A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt 274 (494)
.+.|++.++.|.+++++...-. ....+|..++..+.+.|.+..
T Consensus 306 ~~~Gs~~~iRR~al~~iGGf~~-------~~vtED~~l~~rL~~~G~~~~ 348 (713)
T TIGR03030 306 FFCGSAAVLRREALDEIGGIAG-------ETVTEDAETALKLHRRGWNSA 348 (713)
T ss_pred eecCceeEEEHHHHHHcCCCCC-------CCcCcHHHHHHHHHHcCCeEE
Confidence 2468889999999988653311 124579999999988886643
No 44
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=67.21 E-value=1.6e+02 Score=30.55 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=57.9
Q ss_pred CccEEEEEcCCceeehhHHHHHhccC----CCCCCEEEEecCCCC-C---Ccc-----------------cccccccccc
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKY----DDDRWFYVGSNSEGY-E---QNA-----------------KHSFGMAFGG 228 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~y----D~~~p~YIG~~se~~-~---q~~-----------------~fg~~~A~GG 228 (494)
..+|++++|.|+...++.+.+++... ++.-.+.+|+..... . ... ..|..+.--.
T Consensus 162 ~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~ 241 (333)
T PTZ00260 162 RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQ 241 (333)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 46899999999988876655555443 345568899875211 0 000 1122333445
Q ss_pred eee-EEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCC
Q 011085 229 GGF-AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (494)
Q Consensus 229 aG~-vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pg 278 (494)
.|+ ++++.+++.+.+.. ..+ .|.-|..+-..+...|.++...|-
T Consensus 242 ~Gfk~~~r~~~~~i~~~~--~~~----~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 242 CGFKLFTRETARIIFPSL--HLE----RWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CCeEEEeHHHHHHHhhhc--ccc----CccchHHHHHHHHHcCCCEEEEce
Confidence 665 78999998875431 111 234466666556667766655543
No 45
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.17 E-value=17 Score=32.85 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=54.5
Q ss_pred CccEEEEEcCCceeehhHHHHHhccC--CCCCCEEEEecCC---CCC-Cc---------ccccccccccceeeEEcHHHH
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSE---GYE-QN---------AKHSFGMAFGGGGFAISHSLA 238 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~y--D~~~p~YIG~~se---~~~-q~---------~~fg~~~A~GGaG~vLSr~Ll 238 (494)
..+|++++|+|..+..+.+.++|... +++..+..|.... ... .. ..+.......|+|+++++.++
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLF 154 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHHH
Confidence 57999999999999888888777222 3334445554321 110 00 001112345778899999999
Q ss_pred HHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCcc
Q 011085 239 RVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGL 273 (494)
Q Consensus 239 ~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~L 273 (494)
+++.. ++. .+ .+++|..+..=+.+.|...
T Consensus 155 ~~~~~-f~~---~~--~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 155 EKYGG-FDE---SY--RIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred HHhCC-Cch---hh--CchhhHHHHHHHHHcCCce
Confidence 88754 221 11 2456776555555556444
No 46
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=67.12 E-value=11 Score=34.62 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC--CCCCEEEEecCCCC------CC--cc----cccccccccceeeEEcHHHH
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD--DDRWFYVGSNSEGY------EQ--NA----KHSFGMAFGGGGFAISHSLA 238 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD--~~~p~YIG~~se~~------~q--~~----~fg~~~A~GGaG~vLSr~Ll 238 (494)
...+|++++|+|..+.++.|.++++.++ +.-.+..|...... .. .. .+.....+.|++.++++.++
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 161 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLV 161 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHH
Confidence 3579999999999988888888877763 22233333322100 00 00 00012345567778999998
Q ss_pred HHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCC
Q 011085 239 RVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 239 ~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
+++... +.. + ..+.|..+..=+.+.|.++...|
T Consensus 162 ~~iggf-~~~---~--~~~eD~~l~~rl~~~g~~~~~~~ 194 (202)
T cd04184 162 RQVGGF-REG---F--EGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred HHhCCC-CcC---c--ccchhHHHHHHHHhccceEEEcc
Confidence 887642 221 1 13457766665556676665544
No 47
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=66.30 E-value=17 Score=34.02 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=27.9
Q ss_pred CccEEEEEcCCceeehhHHHHHhcc-CCCCCCEEEEec
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSN 210 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~-yD~~~p~YIG~~ 210 (494)
..+|++++|+|..+.++.|..++.. .+.+..+..|..
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 3589999999998888877777776 455556666654
No 48
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=66.07 E-value=20 Score=33.91 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=51.2
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCC-CCCCEEEEecC---CCCC------------Cc-------cccccccccccee
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS---EGYE------------QN-------AKHSFGMAFGGGG 230 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD-~~~p~YIG~~s---e~~~------------q~-------~~fg~~~A~GGaG 230 (494)
+.+|++++|||+.+.++-|.++++.+. ++.....|... +... .. ......++..|++
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHH 160 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccccccccccccc
Confidence 689999999999988777777776543 33333333321 0000 00 0000012345667
Q ss_pred eEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCcccc
Q 011085 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (494)
Q Consensus 231 ~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~ 275 (494)
.++++.+++++.. ++... ..+.|..+..=+.+.|..+..
T Consensus 161 ~~~~~~~~~~~g~-~~~~~-----~~~eD~~l~~r~~~~G~~~~~ 199 (249)
T cd02525 161 GAYRREVFEKVGG-FDESL-----VRNEDAELNYRLRKAGYKIWL 199 (249)
T ss_pred ceEEHHHHHHhCC-CCccc-----CccchhHHHHHHHHcCcEEEE
Confidence 7888888877642 22221 134566665444455655443
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.79 E-value=15 Score=34.20 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=53.9
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecC---CCCCC----------cccccccccccceeeEEcHHHHHH
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNS---EGYEQ----------NAKHSFGMAFGGGGFAISHSLARV 240 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~s---e~~~q----------~~~fg~~~A~GGaG~vLSr~Ll~~ 240 (494)
..+|++++|+|+++..+.|.+++........ .+|... +.... .........+|+.|+++++.+.++
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEE 150 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHH
Confidence 4799999999999988777777666544433 333321 11000 001111345678899999999877
Q ss_pred HHHhhHHhhhhcccCCcchHHHHHHHHHcCCc
Q 011085 241 LAGALDSCLMRYAHLYGSDARVFSCLVELGVG 272 (494)
Q Consensus 241 L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~ 272 (494)
+... ++. .+++|..+..=+...|..
T Consensus 151 ~G~f-d~~------~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 151 LGGF-PEL------PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred hCCC-Ccc------ccccHHHHHHHHHhCCCE
Confidence 6532 221 255677665555556643
No 50
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=65.14 E-value=38 Score=33.03 Aligned_cols=151 Identities=12% Similarity=0.189 Sum_probs=73.2
Q ss_pred EEEEEecCCcchHhHHHHHHHhhCCCCceEEEEccCCCCC--C---CCCCCCCCcEEecCCCCCccccCCCCcchhhHHH
Q 011085 85 LLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADS--S---SAGDPSLPRIVISADTSKFPFTFPKGLRSAVRVA 159 (494)
Q Consensus 85 IvFGIaTS~~~~~~R~~~vk~Ww~~~~~r~~vflD~~~~~--~---~~~~~~Lp~v~Is~d~sr~~yt~~~g~~sa~Ri~ 159 (494)
|.|-|.+-....+.-...++....+ ....++.+|...+. . .+.....+++.+..+. .. ..+++....-..+
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~-~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r--~~-v~WG~~S~v~A~l 76 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHP-DNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKR--VD-VRWGGFSLVEATL 76 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--T-TSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS--------TTSHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCC-CCEEEEEEcCCCChHHHHHHHHhcccCCceeecccc--cc-cccCCccHHHHHH
Confidence 4566766554555545566666655 56777889976322 1 1112455666554321 11 2344444434445
Q ss_pred HHHHHHHHhcCCCCCccEEEEEcCCceee--hhHHHHHhccCCCCCCEEEEecC-CCCCCccccc----c---------c
Q 011085 160 RVVKEAVDLTDEKAGVRWFVFGDDDTVFF--VDNLVKTLSKYDDDRWFYVGSNS-EGYEQNAKHS----F---------G 223 (494)
Q Consensus 160 riv~e~~~~~~~~p~~kWfv~~DDDTyf~--~~nLv~~Ls~yD~~~p~YIG~~s-e~~~q~~~fg----~---------~ 223 (494)
.+++++++.. ++.+||+++-++.|-. .+.+.+.|+.-+.... ++.... +.......+. + .
T Consensus 77 ~ll~~al~~~---~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~-f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 152 (244)
T PF02485_consen 77 NLLREALKRD---GDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNN-FIESFSDEDPRESGRYNPRIYDPFRPFFRKRT 152 (244)
T ss_dssp HHHHHHHHH----S---EEEEEETTEEESS-HHHHHHHHHHTTT--B----BEE--GGGG-HHHHEEEETTEEEEEEEE-
T ss_pred HHHHHHHhcC---CCCcEEEEcccccccccchHHHHHHHHhcCCCCc-ceecccccccchhhcceeeeeeeccccccccc
Confidence 6777777643 5899999999999866 5788899988643333 222222 1111000000 0 1
Q ss_pred ccccceeeEEcHHHHHHHHH
Q 011085 224 MAFGGGGFAISHSLARVLAG 243 (494)
Q Consensus 224 ~A~GGaG~vLSr~Ll~~L~~ 243 (494)
+..|..=++||+.+++-|..
T Consensus 153 ~~~GSqW~~Ltr~~v~~il~ 172 (244)
T PF02485_consen 153 LYKGSQWFSLTRDFVEYILD 172 (244)
T ss_dssp -EEE-S--EEEHHHHHHHHH
T ss_pred ccccceeeEeeHHHHHHhhh
Confidence 13566667899999999883
No 51
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=63.83 E-value=18 Score=32.83 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=46.1
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCC--------------cccccccc-cccceeeEEcHHHH
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ--------------NAKHSFGM-AFGGGGFAISHSLA 238 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q--------------~~~fg~~~-A~GGaG~vLSr~Ll 238 (494)
..+|++++|+|+....+-|.++++..+....+.+|........ ...++... -.+|+.+++++.++
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 159 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVV 159 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHH
Confidence 4599999999999877777777777666667777876533211 00011112 23566678999999
Q ss_pred HHHHH
Q 011085 239 RVLAG 243 (494)
Q Consensus 239 ~~L~~ 243 (494)
+++..
T Consensus 160 ~~i~~ 164 (181)
T cd04187 160 DALLL 164 (181)
T ss_pred HHHHh
Confidence 98764
No 52
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=60.63 E-value=1.6e+02 Score=35.17 Aligned_cols=93 Identities=18% Similarity=0.074 Sum_probs=56.7
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccC--CCCCCEEEEecCCCC-----------------CC----------ccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGY-----------------EQ----------NAKHSFG 223 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~y--D~~~p~YIG~~se~~-----------------~q----------~~~fg~~ 223 (494)
-+.+++++.|.|+....+-|.+.+..+ |++ --.++.+.... ++ ...++-.
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~-VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~ 416 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK-LAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDAT 416 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhCCC-eEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhccc
Confidence 367999999999998788777777654 332 22333321000 00 0011111
Q ss_pred ccccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccc
Q 011085 224 MAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (494)
Q Consensus 224 ~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt 274 (494)
.+.|++.++.+++++++...-. ....+|..++.-+.+.|.+..
T Consensus 417 -~~~Gs~aviRReaLeeVGGfd~-------~titED~dlslRL~~~Gyrv~ 459 (852)
T PRK11498 417 -FFCGSCAVIRRKPLDEIGGIAV-------ETVTEDAHTSLRLHRRGYTSA 459 (852)
T ss_pred -ccccceeeeEHHHHHHhcCCCC-------CccCccHHHHHHHHHcCCEEE
Confidence 2457889999999998754321 124678888888887776543
No 53
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=59.40 E-value=19 Score=32.45 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=28.8
Q ss_pred ccEEEEEcCCceeehhHHHHHhcc-CCCCCCEEEEecC
Q 011085 175 VRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNS 211 (494)
Q Consensus 175 ~kWfv~~DDDTyf~~~nLv~~Ls~-yD~~~p~YIG~~s 211 (494)
.+|++++|+|+.+.++-|.++++. ........+|...
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 499999999999888888888886 4555566777654
No 54
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=54.67 E-value=20 Score=29.98 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=35.7
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCCcccccccccccceeeEEcHHHHHHHHHh
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGA 244 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q~~~fg~~~A~GGaG~vLSr~Ll~~L~~~ 244 (494)
+.+|++++|+|..+.++.+..++..+-.++..- .+.|.+++++++..++++...
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~ 130 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEAD-----------------AVGGPGNLLFRRELLEEIGGF 130 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCce-----------------EEeccchheeeHHHHHHhCCc
Confidence 699999999999988877777644322211110 112227888999999887654
No 55
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=54.45 E-value=4.1e+02 Score=30.96 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCC
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD 200 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD 200 (494)
.++++++..|.|+.+..+-|.+++..+.
T Consensus 219 ~~~eyivvLDADs~m~~d~L~~lv~~m~ 246 (691)
T PRK05454 219 GAYDYMVVLDADSLMSGDTLVRLVRLME 246 (691)
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999888763
No 56
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=53.33 E-value=52 Score=31.80 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=28.8
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCC-CCCCEEEEecC
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS 211 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD-~~~p~YIG~~s 211 (494)
..+|++++|+|..+.++.|.+++..+. ..-.+.+|...
T Consensus 93 ~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~ 131 (243)
T PLN02726 93 SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRY 131 (243)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccc
Confidence 578999999999988887777777663 34566777643
No 57
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=52.88 E-value=1.7e+02 Score=29.33 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=19.8
Q ss_pred CccEEEEEcCCceeehhHHHHHhccC
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKY 199 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~y 199 (494)
..+|++|+|+|+.+.++-|.++|+.+
T Consensus 83 ~gd~i~fLD~D~~~~~~wL~~ll~~l 108 (299)
T cd02510 83 TGDVLVFLDSHCEVNVGWLEPLLARI 108 (299)
T ss_pred cCCEEEEEeCCcccCccHHHHHHHHH
Confidence 57999999999999865555555443
No 58
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=52.48 E-value=60 Score=36.12 Aligned_cols=101 Identities=15% Similarity=-0.002 Sum_probs=58.9
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCCCC-----CEEEEecCCCC-----------CC-------ccccccccccccee
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDR-----WFYVGSNSEGY-----------EQ-------NAKHSFGMAFGGGG 230 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~-----p~YIG~~se~~-----------~q-------~~~fg~~~A~GGaG 230 (494)
..+++++.|.|+.+.++.|..+ ....++. +++.+...... .. ...+|.....+|.|
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~-~~~~~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg 236 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLY-NYLLPRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVG 236 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHH-HhhcCCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCee
Confidence 4699999999999888877654 3332222 23322111000 00 01122223356999
Q ss_pred eEEcHHHHHHHHHhhHHhhhhc-ccCCcchHHHHHHHHHcCCccccCC
Q 011085 231 FAISHSLARVLAGALDSCLMRY-AHLYGSDARVFSCLVELGVGLTPEP 277 (494)
Q Consensus 231 ~vLSr~Ll~~L~~~~d~C~~~~-~~~~ggD~~L~~Ci~~lGV~Lt~~p 277 (494)
+++++.+++++...-.+. .+ +....+|..++.-+...|.+....|
T Consensus 237 ~afRR~aLe~l~~~~GG~--~fd~~sLTED~dLglRL~~~G~rv~y~p 282 (504)
T PRK14716 237 TAFSRRALERLAAERGGQ--PFDSDSLTEDYDIGLRLKRAGFRQIFVR 282 (504)
T ss_pred EEeEHHHHHHHHhhcCCC--CCCCCCcchHHHHHHHHHHCCCEEEEec
Confidence 999999999985321111 01 1234689999999998887765433
No 59
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=49.82 E-value=40 Score=33.76 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=60.7
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccC--CCCCCE----EEEecCCCCC---C---ccc-----------c-cccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWF----YVGSNSEGYE---Q---NAK-----------H-SFGMAFGG 228 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~y--D~~~p~----YIG~~se~~~---q---~~~-----------f-g~~~A~GG 228 (494)
...++++++|.|+...++-|.+++..+ ||+--. +.+....+.. + ... | +-...+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 173 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWG 173 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccc
Confidence 467999999999999999999998876 443111 1111111110 0 000 0 00112458
Q ss_pred eeeEEcHHHHHHHHHh--hHHhhhhc-ccCCcchHHHHHHHHHcCCccccCCC
Q 011085 229 GGFAISHSLARVLAGA--LDSCLMRY-AHLYGSDARVFSCLVELGVGLTPEPG 278 (494)
Q Consensus 229 aG~vLSr~Ll~~L~~~--~d~C~~~~-~~~~ggD~~L~~Ci~~lGV~Lt~~pg 278 (494)
+++++.+.+++++... +++.. .+ ......|..++.-+...|-.+...|.
T Consensus 174 ~~~~~Rr~al~~~~~~~~i~g~g-~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 174 HNAIIRVAAFMEHCALPVLPGRP-PFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred eEEEEEHHHHHHhcCCccccCCC-CCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 8899999988775321 11111 11 11234688999999888877766654
No 60
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=48.35 E-value=2e+02 Score=29.08 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=59.5
Q ss_pred EEEEEcCCceeehhHHHHHhccCCCCCC-EEEEecCCCCC------Cc-----------------------cccccccc-
Q 011085 177 WFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSNSEGYE------QN-----------------------AKHSFGMA- 225 (494)
Q Consensus 177 Wfv~~DDDTyf~~~nLv~~Ls~yD~~~p-~YIG~~se~~~------q~-----------------------~~fg~~~A- 225 (494)
|+++.++||++..+.|.++|+..+.... ..+|...-... .. ...-...+
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVAS 166 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhh
Confidence 9999999999887777666655443322 22222210000 00 00000122
Q ss_pred ccceeeEEcHHHHHHHHHhhHHhhhhcccCCcchHHHHHHHHHcCCccccCCCCC
Q 011085 226 FGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFH 280 (494)
Q Consensus 226 ~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~ggD~~L~~Ci~~lGV~Lt~~pgfh 280 (494)
.-|+.+++++.+++++.- +|+ +| -.|..|..++.=+.+.|.++-..|+..
T Consensus 167 ~~G~~~li~~~~~~~vG~-~de---~~-F~y~eD~D~~~R~~~~G~~i~~~p~a~ 216 (305)
T COG1216 167 LSGACLLIRREAFEKVGG-FDE---RF-FIYYEDVDLCLRARKAGYKIYYVPDAI 216 (305)
T ss_pred cceeeeEEcHHHHHHhCC-CCc---cc-ceeehHHHHHHHHHHcCCeEEEeeccE
Confidence 578889999999999765 333 12 246688888877778998877666543
No 61
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=44.72 E-value=14 Score=31.96 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=21.6
Q ss_pred CccEEEEEcCCceeehhHHHHHhccCCC-CCCEEEEec
Q 011085 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDD-DRWFYVGSN 210 (494)
Q Consensus 174 ~~kWfv~~DDDTyf~~~nLv~~Ls~yD~-~~p~YIG~~ 210 (494)
..+|++++|||+++..+.|.+++..++. .....+|..
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3559999999999986555444444433 223444443
No 62
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=42.28 E-value=53 Score=34.01 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=47.0
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCCC--------------cccccccccccceee-EEcHHH
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ--------------NAKHSFGMAFGGGGF-AISHSL 237 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~q--------------~~~fg~~~A~GGaG~-vLSr~L 237 (494)
...+|++++|+|.-.+++.+.++++.....-++..|........ ....|..+...++|+ ++++.+
T Consensus 89 A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~ 168 (325)
T PRK10714 89 VTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHI 168 (325)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHH
Confidence 35799999999999998888888777643334555544321110 011233456678888 799999
Q ss_pred HHHHHH
Q 011085 238 ARVLAG 243 (494)
Q Consensus 238 l~~L~~ 243 (494)
++++..
T Consensus 169 ~~~l~~ 174 (325)
T PRK10714 169 VDAMLH 174 (325)
T ss_pred HHHHHH
Confidence 998853
No 63
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=39.93 E-value=34 Score=34.10 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHhcCCCCCccEEEEEcCCceee
Q 011085 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF 188 (494)
Q Consensus 154 sa~Ri~riv~e~~~~~~~~p~~kWfv~~DDDTyf~ 188 (494)
..|.-..+++++...+ |+++|++.+|.|++|-
T Consensus 59 ~~W~K~~~lr~~m~~~---P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 59 GSWAKIPALRAAMKKY---PEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHHTHHHHHHHHHHH----TT-SEEEEE-TTEEE-
T ss_pred hhhHHHHHHHHHHHhC---CCCCEEEEEcCCeEEE
Confidence 4566666777776554 8999999999999886
No 64
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=32.60 E-value=60 Score=27.79 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccC
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY 199 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~y 199 (494)
.+.+|++++|+|..+..+-|.+++..+
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHh
Confidence 368999999999998877777664443
No 65
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=28.82 E-value=51 Score=32.94 Aligned_cols=53 Identities=30% Similarity=0.266 Sum_probs=30.9
Q ss_pred chhhhhcccccccccCCCCCcccccCCCC-ccchh-hh-HHHHHHHHHHHHHHHHH
Q 011085 6 NESRRRKRIISFLQNHSSFSPKIKMMPSR-TLTPS-AL-KNSILLFSFLLIIYLFF 58 (494)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~ 58 (494)
|-.|..|||+.+.||..|-.|--...|-. .---| -+ |-.+-.+-||+|+|++-
T Consensus 103 ~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfg 158 (319)
T KOG3832|consen 103 GYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFG 158 (319)
T ss_pred CchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45678899999999998766621111000 00011 12 33334778899988864
No 66
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=28.50 E-value=50 Score=31.06 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=26.0
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEec
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSN 210 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~ 210 (494)
...+|++++|+|+.+.++.|.+.+..+..+....+|..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 35799999999999888777666555432233455654
No 67
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=25.04 E-value=69 Score=34.20 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=10.6
Q ss_pred ccccceeeEEcHHHHHHHHHh
Q 011085 224 MAFGGGGFAISHSLARVLAGA 244 (494)
Q Consensus 224 ~A~GGaG~vLSr~Ll~~L~~~ 244 (494)
+.+||||+++|+++++.++..
T Consensus 213 y~~g~ag~~ls~aa~~~la~~ 233 (364)
T KOG2246|consen 213 YSSGGAGYVLSFAALRRLAER 233 (364)
T ss_pred cccCCCCcceeHHHHHHHHHH
Confidence 444555555555555554443
No 68
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=25.01 E-value=3.7e+02 Score=27.28 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.7
Q ss_pred ccceeeEEcHHHHHHHHHhhHH
Q 011085 226 FGGGGFAISHSLARVLAGALDS 247 (494)
Q Consensus 226 ~GGaG~vLSr~Ll~~L~~~~d~ 247 (494)
-|=+|+++|+.+++.+.+....
T Consensus 155 ~gt~gYiis~~aAk~fl~~~~~ 176 (255)
T COG3306 155 LGTAGYIISRKAAKKFLELTES 176 (255)
T ss_pred cCccceeecHHHHHHHHHHhhh
Confidence 4779999999999999987654
No 69
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=23.57 E-value=1.8e+02 Score=30.70 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=54.0
Q ss_pred hhhHHHH----HHHHHHHhcCCCCCccEEEEEcCCceeehh---HHHHHhccCCCCCCEEE-EecC-CCCCC-----ccc
Q 011085 154 SAVRVAR----VVKEAVDLTDEKAGVRWFVFGDDDTVFFVD---NLVKTLSKYDDDRWFYV-GSNS-EGYEQ-----NAK 219 (494)
Q Consensus 154 sa~Ri~r----iv~e~~~~~~~~p~~kWfv~~DDDTyf~~~---nLv~~Ls~yD~~~p~YI-G~~s-e~~~q-----~~~ 219 (494)
...++++ .+..+++. .+.+-.+++|||-.+.++ -+.+.|..|..++.++. ++-. .+... ...
T Consensus 77 ~y~~ia~hyk~aln~vF~~----~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG~~~~~~~~~~~ 152 (334)
T cd02514 77 GYYRIARHYKWALTQTFNL----FGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNGKEHFVDDTPSL 152 (334)
T ss_pred hhhHHHHHHHHHHHHHHHh----cCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCCcccccCCCcce
Confidence 3455565 56666543 368999999999998876 66788888877776543 3322 11111 111
Q ss_pred ccccccccceeeEEcHHHHHHH
Q 011085 220 HSFGMAFGGGGFAISHSLARVL 241 (494)
Q Consensus 220 fg~~~A~GGaG~vLSr~Ll~~L 241 (494)
+-..-.+.|.|.++.+.+-+++
T Consensus 153 lyrs~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 153 LYRTDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred EEEecCCCchHHHHHHHHHHHh
Confidence 1112356899999999999887
No 70
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=23.49 E-value=3e+02 Score=27.57 Aligned_cols=96 Identities=26% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCccEEEEEcCCceeehhHHHHHhc---cCCCCC-CEEEEecC---CCC-----C-----------------Cccccccc
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLS---KYDDDR-WFYVGSNS---EGY-----E-----------------QNAKHSFG 223 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls---~yD~~~-p~YIG~~s---e~~-----~-----------------q~~~fg~~ 223 (494)
-..+|++|+|.|.++.++.|.+.+. ..+.+. ..+++... +.. . ....+++
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEF- 165 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhcccccccc-
Confidence 4789999999999999888888887 454333 33222211 110 0 0111111
Q ss_pred ccccceeeEEcHHHHHHHHHhhHHhhhhcccCCc-chHHHHHHHHHcCCccc
Q 011085 224 MAFGGGGFAISHSLARVLAGALDSCLMRYAHLYG-SDARVFSCLVELGVGLT 274 (494)
Q Consensus 224 ~A~GGaG~vLSr~Ll~~L~~~~d~C~~~~~~~~g-gD~~L~~Ci~~lGV~Lt 274 (494)
.+..|+-+++++....++... | +.|. .|| +|..++.=|...|..+.
T Consensus 166 ~~~~s~~~~i~r~~f~~iGGf-D---E~f~-G~G~ED~D~~~RL~~~~~~~~ 212 (281)
T PF10111_consen 166 IAFASSCFLINREDFLEIGGF-D---ERFR-GWGYEDIDFGYRLKKAGYKFK 212 (281)
T ss_pred ccccceEEEEEHHHHHHhCCC-C---cccc-CCCcchHHHHHHHHHcCCcEe
Confidence 344568889999998886643 2 2232 244 58877776777775553
No 71
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.48 E-value=3.1e+02 Score=26.80 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=28.4
Q ss_pred CeEEEEEecCCcchHhHH-HHHHHhhCCCCceEEEEccCC
Q 011085 83 RHLLFSIASSSSSWPRRR-SYVRLWYSPNSTRALTFLDRA 121 (494)
Q Consensus 83 s~IvFGIaTS~~~~~~R~-~~vk~Ww~~~~~r~~vflD~~ 121 (494)
+...|-|.|+.+.+++-+ .|+++--.. .+.--|+++++
T Consensus 50 ~~~~fqitttr~~LN~li~syl~~~~te-e~~YKv~it~~ 88 (197)
T COG4698 50 SEKSFQITTTRSQLNELINSYLEDYQTE-EMPYKVYITDE 88 (197)
T ss_pred cceeEEEEccHHHHHHHHHHHHHHhhhc-cCCeEEEEecC
Confidence 889999999999999988 588875444 55555555544
No 72
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=20.99 E-value=1.5e+02 Score=29.80 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=53.0
Q ss_pred CCccEEEEEcCCceeehhHHHHHhccCCCCCCEEEEecCCCCC---Ccccc--------cccccccceeeEEcHHHHHHH
Q 011085 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYE---QNAKH--------SFGMAFGGGGFAISHSLARVL 241 (494)
Q Consensus 173 p~~kWfv~~DDDTyf~~~nLv~~Ls~yD~~~p~YIG~~se~~~---q~~~f--------g~~~A~GGaG~vLSr~Ll~~L 241 (494)
-.++..+.+|||+.+..+.|....+..-....-.+|.....+. ....| .|+|.-.|+.|+ .+..+...
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~~~~ySmvLt~aaf~-h~~yl~~Y 152 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEWSNEYSMVLTGAAFY-HRYYLELY 152 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SSS--BSEE-TTEEEE-ETHHHHHH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCCCCcchhhhhhhHhh-cchHHHHH
Confidence 4689999999999999998876665554445556676543320 11111 256776666654 44445544
Q ss_pred HHhhHHhhhhcc--cCCcchHHHHHHHHH-cCCcc
Q 011085 242 AGALDSCLMRYA--HLYGSDARVFSCLVE-LGVGL 273 (494)
Q Consensus 242 ~~~~d~C~~~~~--~~~ggD~~L~~Ci~~-lGV~L 273 (494)
...+..-+..+- ..-|+|..+..-+++ +|-+.
T Consensus 153 ~~~~p~~~r~~Vd~~~NCEDI~mNflvs~~T~~pP 187 (247)
T PF09258_consen 153 THWLPASIREYVDEHFNCEDIAMNFLVSNLTGKPP 187 (247)
T ss_dssp HT-S-HHHHHHHHHHTS-HHHHHHHHHHHHHSS-S
T ss_pred hcCcHHHHHHHHhccCCHHHHHHHHHHHHhccCCC
Confidence 432211111111 134689999988876 56443
Done!