BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011087
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDD|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3IDD|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 407
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 208/397 (52%), Gaps = 42/397 (10%)
Query: 9 RRVAFVLIDGLGDVSLPRFGYKTPLQAAYVPNLDAIASAGVNGLLDPVEVGLGCGSDTAH 68
+ + +++DGLGD +TPLQAA+ PNL+ +AS G+NG+ P+ G+ CGSDT+H
Sbjct: 6 KSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIXHPISPGIRCGSDTSH 65
Query: 69 LSLLGYNPRVYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDEKTGIVTSRRADRHFEEE 128
SLLGY+P+VYY GRG FE++G G + PGD+AF++NFAT + G++ RRA R E +
Sbjct: 66 XSLLGYDPKVYYPGRGPFEALGLGXDIRPGDLAFRANFAT--NRDGVIVDRRAGR--ENK 121
Query: 129 GPILCAALDRMKLPSFPQYEVRVRYATEHRCGVVVKGPNLSGNISGTDPLKDNRLLFQAQ 188
G A D + L +Y RV+ EHR +VV GP+LS I +DP ++ +
Sbjct: 122 GNEELA--DAISL-DXGEYSFRVKSGVEHRAALVVSGPDLSDXIGDSDPHREG---LPPE 175
Query: 189 ALDDTD-EAKHTAAVVNELSREISKILVSHPLNAKRAAEGKNIANVVLLRGCGIRIEVPS 247
+ TD TA V N E +IL H +N +R G+ N +L+R G +PS
Sbjct: 176 KIRPTDPSGDRTAEVXNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPS 235
Query: 248 FEKKHGLWPCMVAPTKIIAGLGLSLDIDILEAPGATGDYRTILTSKATAIAKALSAPLQS 307
F +K+ V + + GL L D+ + PGATG T+ ++ I KA+
Sbjct: 236 FTEKNRXKGACVVGSPWLKGLCRLLRXDVFDVPGATG---TVGSNYRGKIEKAVDL---- 288
Query: 308 CPNVFVPGEDEHKPGRSDGYDFGFLHIKAVDDAGHDKASIFKVKALEAVDRAIGQLARLL 367
+ +DF ++IKA D AGHD K +E +DRA L
Sbjct: 289 ----------------TSSHDFVLVNIKATDVAGHDGNYPLKRDVIEDIDRAXEPL---- 328
Query: 368 WQAEKSGKFQYFLCVTGDHSTPVEYGDHSFEPVPLAM 404
KS +CVTGDHSTP + DHS +PVP+
Sbjct: 329 ----KSIGDHAVICVTGDHSTPCSFKDHSGDPVPIVF 361
>pdb|3KD8|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3KD8|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 399
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 208/397 (52%), Gaps = 42/397 (10%)
Query: 9 RRVAFVLIDGLGDVSLPRFGYKTPLQAAYVPNLDAIASAGVNGLLDPVEVGLGCGSDTAH 68
+ + +++DGLGD +TPLQAA+ PNL+ +AS G+NG+ P+ G+ CGSDT+H
Sbjct: 5 KSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIXHPISPGIRCGSDTSH 64
Query: 69 LSLLGYNPRVYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDEKTGIVTSRRADRHFEEE 128
SLLGY+P+VYY GRG FE++G G + PGD+AF++NFAT + G++ RRA R E +
Sbjct: 65 XSLLGYDPKVYYPGRGPFEALGLGXDIRPGDLAFRANFAT--NRDGVIVDRRAGR--ENK 120
Query: 129 GPILCAALDRMKLPSFPQYEVRVRYATEHRCGVVVKGPNLSGNISGTDPLKDNRLLFQAQ 188
G A D + L +Y RV+ EHR +VV GP+LS I +DP ++ +
Sbjct: 121 GNEELA--DAISL-DXGEYSFRVKSGVEHRAALVVSGPDLSDXIGDSDPHREG---LPPE 174
Query: 189 ALDDTD-EAKHTAAVVNELSREISKILVSHPLNAKRAAEGKNIANVVLLRGCGIRIEVPS 247
+ TD TA V N E +IL H +N +R G+ N +L+R G +PS
Sbjct: 175 KIRPTDPSGDRTAEVXNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPS 234
Query: 248 FEKKHGLWPCMVAPTKIIAGLGLSLDIDILEAPGATGDYRTILTSKATAIAKALSAPLQS 307
F +K+ V + + GL L D+ + PGATG T+ ++ I KA+
Sbjct: 235 FTEKNRXKGACVVGSPWLKGLCRLLRXDVFDVPGATG---TVGSNYRGKIEKAVDL---- 287
Query: 308 CPNVFVPGEDEHKPGRSDGYDFGFLHIKAVDDAGHDKASIFKVKALEAVDRAIGQLARLL 367
+ +DF ++IKA D AGHD K +E +DRA L
Sbjct: 288 ----------------TSSHDFVLVNIKATDVAGHDGNYPLKRDVIEDIDRAXEPL---- 327
Query: 368 WQAEKSGKFQYFLCVTGDHSTPVEYGDHSFEPVPLAM 404
KS +CVTGDHSTP + DHS +PVP+
Sbjct: 328 ----KSIGDHAVICVTGDHSTPCSFKDHSGDPVPIVF 360
>pdb|2ZKT|A Chain A, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
pdb|2ZKT|B Chain B, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
Length = 412
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/405 (34%), Positives = 204/405 (50%), Gaps = 49/405 (12%)
Query: 8 KRRVAFVLIDGLGDVSLPRFGYKTPLQAAYVPNLDAIASAGVNGLLDPVEVGLGCGSDTA 67
KR+ +++DGLGD + TPL+ A PN+D +A G+ G DP++ G GSDTA
Sbjct: 4 KRKGLLIILDGLGDRPIKELNGLTPLEYANTPNMDKLAEIGILGQQDPIKPGQPAGSDTA 63
Query: 68 HLSLLGYNPRVYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDEKTGIVTSRRADRHFEE 127
HLS+ GY+P YRGRG FE++G GL +S D+AF+ NFATL+ GI+T RRA R E
Sbjct: 64 HLSIFGYDPYETYRGRGFFEALGVGLDLSKDDLAFRVNFATLE--NGIITDRRAGRISTE 121
Query: 128 EGPILCAALDRMKLPSFPQYEVRV------RYATEHRCGVVVKGPNLSGNISGTDPLKDN 181
E L A+ Q EV + + AT HR +V+KG + + DP +
Sbjct: 122 EAHELARAI---------QEEVDIGVDFIFKGATGHRAVLVLKGMSRGYKVGDNDPHEAG 172
Query: 182 RLLFQAQALDDTDEAKHTAAVVNELSREISKILVSHPLNAKRAAEGKNIANVVLLRGCGI 241
+ + D +++K A ++ E ++ ++L HP+N +R EGK IAN +L+RG G
Sbjct: 173 KPPLKFSYED--EDSKKVAEILEEFVKKAQEVLEKHPINERRRKEGKPIANYLLIRGAGT 230
Query: 242 RIEVP-SFEKKHGLWPCMVAPTKIIAGLGLSLDIDILEAPGATGDYRTILTSKATAIAKA 300
+P F ++ + V ++ G+ ++ D+ GATG+Y T +KA +
Sbjct: 231 YPNIPMKFTEQWKVKAAGVIAVALVKGVARAVGFDVYTPEGATGEYNTNEMAKAKKAVEL 290
Query: 301 LSAPLQSCPNVFVPGEDEHKPGRSDGYDFGFLHIKAVDDAGHDKASIFKVKALEAVDRAI 360
L YDF FLH K D AGHD K + +E DR I
Sbjct: 291 LK-----------------------DYDFVFLHFKPTDAAGHDNKPKLKAELIERADRMI 327
Query: 361 GQLARLLWQAEKSGKFQYFLCVTGDHSTPVEYGDHSFEPVPLAMC 405
G + + E + +TGDHSTP E +HS +PVPL +
Sbjct: 328 GYILDHVDLEE------VVIAITGDHSTPCEVMNHSGDPVPLLIA 366
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 20/128 (15%)
Query: 324 SDGYDFGFLHIKAVDDAGHDKASIFKVKALEAVDRAIGQLARLLWQAEKSGKFQYFLCVT 383
+D YD L+ D GH +KA+EAVD +G++ + K G +T
Sbjct: 389 ADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILA--KGG----IAIIT 442
Query: 384 GDHSTPVEY--------GDHSFEPVPLAMC----QLKDFVGAVGGESAVMEIPLDPFPLP 431
DH E H+ PVP+ + +L+D G + G+ A + L P P
Sbjct: 443 ADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRD--GGILGDLAPTMLDLLGLPQP 500
Query: 432 TVKAGEDL 439
G+ L
Sbjct: 501 KEMTGKSL 508
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 20/128 (15%)
Query: 324 SDGYDFGFLHIKAVDDAGHDKASIFKVKALEAVDRAIGQLARLLWQAEKSGKFQYFLCVT 383
+D YD L+ D GH +KA+EAVD +G++ + K G +T
Sbjct: 389 ADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILA--KGG----IAIIT 442
Query: 384 GDHSTPVEY--------GDHSFEPVPLAMC----QLKDFVGAVGGESAVMEIPLDPFPLP 431
DH E H+ PVP+ + +L+D G + G+ A + L P P
Sbjct: 443 ADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRD--GGILGDLAPTMLDLLGLPQP 500
Query: 432 TVKAGEDL 439
G+ L
Sbjct: 501 KEMTGKSL 508
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 214 LVSHPLNAKRAAEGKNIANVVLL 236
LV++P++A+ AAEGK++ N V +
Sbjct: 216 LVAYPISARHAAEGKSLVNWVCM 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,347,158
Number of Sequences: 62578
Number of extensions: 667073
Number of successful extensions: 1576
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 14
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)