BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011091
         (494 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
           Refined With A Paramagnetism Based Strategy
          Length = 109

 Score = 30.8 bits (68), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 321 DSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT 374
           D+F+ Q   Q S + +M    +   F  IDN   G+L++E+ +K F  L K+ +
Sbjct: 23  DTFEPQKFFQTSGLSKMSANQVKDVFRFIDNDQSGYLDEEE-LKFF--LQKFES 73


>pdb|3RVY|A Chain A, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Ile217cys, 2.7 A)
 pdb|3RVY|B Chain B, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Ile217cys, 2.7 A)
 pdb|3RVZ|A Chain A, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Ile217cys, 2.8 A)
 pdb|3RVZ|B Chain B, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Ile217cys, 2.8 A)
          Length = 285

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 181 DFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVXXXXXX 240
           DF V  + L P +  F  LR+   +R+   +  + Q+R  +  L  ++   L+V      
Sbjct: 98  DFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTL 157

Query: 241 XXXXXXXXXYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSN-NPDVWIPAYKASRWYCLF 299
                      +F +       F + G + Y +F + T  + +  +  P  +   +  +F
Sbjct: 158 FFYIFAIMATQLFGERFPEW--FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVF 215

Query: 300 FVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNK 359
           F+ ++ +  + + NL++A+  D+      K+        +  + +  +  DN N      
Sbjct: 216 FIPFIFVVTFVMINLVVAICVDAMAILNQKE-------EQHIIDEVQSHEDNIN------ 262

Query: 360 EQCIKLFEELNKYRTLPNIS 379
            + IKL EE+ + + L   S
Sbjct: 263 NEIIKLREEIVELKELIKTS 282


>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
 pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
 pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
 pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
          Length = 1193

 Score = 29.3 bits (64), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 331 VSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT 374
             E + + ++ L K    I+N+N     KEQ IK FEEL+KY+ 
Sbjct: 591 AQEQENLEKQELKKR---IENFNEQ--EKEQVIKNFEELSKYKN 629


>pdb|4EKW|A Chain A, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Wild- Type, 3.2 A)
 pdb|4EKW|B Chain B, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Wild- Type, 3.2 A)
 pdb|4EKW|C Chain C, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Wild- Type, 3.2 A)
 pdb|4EKW|D Chain D, Crystal Structure Of The Navab Voltage-Gated Sodium
           Channel (Wild- Type, 3.2 A)
          Length = 285

 Score = 28.5 bits (62), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 18/201 (8%)

Query: 181 DFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVXXXXXX 240
           DF V  + L P +  F  LR+   +R+   +  + Q R  +  L  ++   L+V      
Sbjct: 98  DFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQXRKIVSALISVIPGXLSVIALXTL 157

Query: 241 XXXXXXXXXYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSN-NPDVWIPAYKASRWYCLF 299
                      +F +  +    F + G + Y +F + T  + +  +  P  +   +  +F
Sbjct: 158 FFYIFAIXATQLFGE--RFPEWFGTLGESFYTLFQVXTLESWSXGIVRPLXEVYPYAWVF 215

Query: 300 FVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSE-MDRMRRRTLGKAFNLIDNYNVGFLN 358
           F+ ++ +  +   NL++A++ D+      K+    +D ++           DN N     
Sbjct: 216 FIPFIFVVTFVXINLVVAIIVDAXAILNQKEEQHIIDEVQSHE--------DNIN----- 262

Query: 359 KEQCIKLFEELNKYRTLPNIS 379
             + IKL EE+ + + L   S
Sbjct: 263 -NEIIKLREEIVELKELIKTS 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.143    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,088,139
Number of Sequences: 62578
Number of extensions: 436714
Number of successful extensions: 1173
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1169
Number of HSP's gapped (non-prelim): 6
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)