Query 011091
Match_columns 494
No_of_seqs 333 out of 1774
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2302 T-type voltage-gated C 100.0 3.2E-37 6.8E-42 328.1 23.1 285 139-492 1162-1495(1956)
2 KOG2301 Voltage-gated Ca2+ cha 100.0 3.8E-35 8.2E-40 339.3 18.8 284 137-493 876-1212(1592)
3 KOG2301 Voltage-gated Ca2+ cha 100.0 7.4E-33 1.6E-37 320.4 16.6 333 138-492 105-497 (1592)
4 KOG2302 T-type voltage-gated C 100.0 1.1E-27 2.5E-32 255.7 28.2 200 138-342 118-412 (1956)
5 PF00520 Ion_trans: Ion transp 99.9 8.4E-23 1.8E-27 191.1 14.8 182 138-319 2-200 (200)
6 KOG3713 Voltage-gated K+ chann 99.9 5.9E-21 1.3E-25 196.2 19.0 189 137-332 244-439 (477)
7 PLN03223 Polycystin cation cha 99.9 3.4E-20 7.3E-25 206.4 22.7 225 99-329 1144-1428(1634)
8 KOG1545 Voltage-gated shaker-l 99.7 2E-17 4.3E-22 162.9 6.5 187 136-329 256-452 (507)
9 PF08016 PKD_channel: Polycyst 99.6 5.5E-15 1.2E-19 156.5 17.1 180 139-325 217-424 (425)
10 KOG3599 Ca2+-modulated nonsele 99.6 1.5E-14 3.3E-19 160.8 20.5 278 44-330 366-686 (798)
11 KOG4390 Voltage-gated A-type K 99.3 3.3E-14 7.1E-19 141.4 -4.7 182 137-327 231-413 (632)
12 TIGR00870 trp transient-recept 99.2 1E-09 2.2E-14 124.3 22.8 190 139-330 395-622 (743)
13 KOG1419 Voltage-gated K+ chann 99.0 1.8E-08 4E-13 105.1 16.4 211 136-353 128-357 (654)
14 KOG3609 Receptor-activated Ca2 98.5 6.4E-06 1.4E-10 90.6 19.3 192 138-330 386-618 (822)
15 PLN03192 Voltage-dependent pot 98.2 0.00021 4.5E-09 82.3 23.7 158 137-299 96-283 (823)
16 KOG3614 Ca2+/Mg2+-permeable ca 97.8 0.0017 3.6E-08 75.0 20.5 228 142-371 831-1089(1381)
17 PF13499 EF-hand_7: EF-hand do 97.8 3.7E-05 8E-10 59.3 4.5 65 342-407 2-66 (66)
18 KOG0510 Ankyrin repeat protein 97.6 0.00042 9.2E-09 76.2 11.8 166 158-330 587-764 (929)
19 cd05022 S-100A13 S-100A13: S-1 97.6 0.00029 6.4E-09 58.2 7.9 68 340-412 8-78 (89)
20 cd05027 S-100B S-100B: S-100B 97.5 0.00064 1.4E-08 56.0 8.9 68 340-412 8-82 (88)
21 smart00027 EH Eps15 homology d 97.4 0.0018 3.8E-08 54.1 9.7 69 339-414 9-77 (96)
22 cd00052 EH Eps15 homology doma 97.4 0.0012 2.6E-08 50.6 8.1 64 343-413 2-65 (67)
23 COG5126 FRQ1 Ca2+-binding prot 97.2 0.0011 2.3E-08 60.6 7.6 65 338-407 90-154 (160)
24 KOG3533 Inositol 1,4,5-trispho 97.1 0.0077 1.7E-07 69.0 14.0 131 208-338 2399-2584(2706)
25 cd05026 S-100Z S-100Z: S-100Z 97.1 0.0033 7.2E-08 52.3 8.7 71 341-412 11-84 (93)
26 KOG0027 Calmodulin and related 97.1 0.0027 5.8E-08 57.6 8.7 65 339-408 84-148 (151)
27 cd00213 S-100 S-100: S-100 dom 97.0 0.006 1.3E-07 49.8 9.7 73 338-411 6-81 (88)
28 cd05031 S-100A10_like S-100A10 97.0 0.0049 1.1E-07 51.2 9.2 75 340-415 8-85 (94)
29 cd05025 S-100A1 S-100A1: S-100 97.0 0.0041 9E-08 51.4 8.7 72 340-412 9-83 (92)
30 cd00051 EFh EF-hand, calcium b 96.9 0.0053 1.1E-07 45.1 7.7 61 342-407 2-62 (63)
31 KOG0028 Ca2+-binding protein ( 96.8 0.0095 2.1E-07 53.8 9.4 64 339-407 105-168 (172)
32 KOG3676 Ca2+-permeable cation 96.7 0.19 4.2E-06 55.9 20.5 99 228-330 540-654 (782)
33 cd05023 S-100A11 S-100A11: S-1 96.7 0.011 2.3E-07 48.8 8.5 71 341-412 10-83 (89)
34 PF13833 EF-hand_8: EF-hand do 96.6 0.0057 1.2E-07 45.0 5.8 51 353-408 1-52 (54)
35 PTZ00184 calmodulin; Provision 96.6 0.014 3E-07 51.6 9.3 62 341-407 85-146 (149)
36 PRK10537 voltage-gated potassi 96.6 0.023 5.1E-07 59.7 12.2 102 195-308 106-207 (393)
37 PTZ00183 centrin; Provisional 96.6 0.017 3.8E-07 51.8 9.8 64 340-408 90-153 (158)
38 cd05029 S-100A6 S-100A6: S-100 96.4 0.022 4.8E-07 46.9 8.6 69 341-411 11-81 (88)
39 KOG0027 Calmodulin and related 96.4 0.014 3E-07 52.9 8.2 66 340-410 8-73 (151)
40 KOG3733 Mucolipidin and relate 96.4 0.033 7.1E-07 57.5 11.2 115 205-326 388-510 (566)
41 PF00036 EF-hand_1: EF hand; 96.1 0.0062 1.4E-07 39.3 3.0 27 382-408 1-27 (29)
42 PTZ00184 calmodulin; Provision 96.1 0.035 7.6E-07 49.1 8.9 65 340-409 11-75 (149)
43 PTZ00183 centrin; Provisional 95.9 0.051 1.1E-06 48.7 9.0 65 340-409 17-81 (158)
44 KOG0498 K+-channel ERG and rel 95.8 0.44 9.6E-06 53.6 17.6 179 137-329 121-349 (727)
45 cd00252 SPARC_EC SPARC_EC; ext 95.7 0.056 1.2E-06 46.9 8.2 62 337-407 45-106 (116)
46 KOG0044 Ca2+ sensor (EF-Hand s 95.7 0.035 7.6E-07 52.4 7.3 68 341-408 101-174 (193)
47 KOG0034 Ca2+/calmodulin-depend 95.6 0.035 7.6E-07 52.2 6.9 67 340-408 104-174 (187)
48 COG5126 FRQ1 Ca2+-binding prot 95.6 0.079 1.7E-06 48.5 8.8 66 340-411 20-85 (160)
49 PF12763 EF-hand_4: Cytoskelet 95.3 0.088 1.9E-06 44.7 7.8 66 339-412 9-74 (104)
50 PF14788 EF-hand_10: EF hand; 94.9 0.083 1.8E-06 38.7 5.5 48 358-410 3-50 (51)
51 cd05024 S-100A10 S-100A10: A s 94.8 0.23 5E-06 41.1 8.7 59 354-413 21-80 (91)
52 cd05030 calgranulins Calgranul 94.6 0.29 6.3E-06 40.1 8.8 69 342-411 10-81 (88)
53 KOG0031 Myosin regulatory ligh 94.4 0.11 2.4E-06 46.8 6.2 70 340-409 32-129 (171)
54 KOG1420 Ca2+-activated K+ chan 94.4 0.048 1E-06 58.2 4.6 136 138-286 167-309 (1103)
55 PF13202 EF-hand_5: EF hand; P 94.2 0.055 1.2E-06 33.5 2.8 23 384-406 2-24 (25)
56 PF14658 EF-hand_9: EF-hand do 94.1 0.19 4.1E-06 38.9 6.3 60 344-407 2-62 (66)
57 PLN02964 phosphatidylserine de 93.9 0.24 5.3E-06 55.0 9.0 63 342-409 181-243 (644)
58 PF13405 EF-hand_6: EF-hand do 93.3 0.1 2.2E-06 33.8 3.0 27 382-408 1-27 (31)
59 KOG0041 Predicted Ca2+-binding 92.7 0.67 1.4E-05 43.6 8.5 62 341-407 100-161 (244)
60 KOG0037 Ca2+-binding protein, 92.6 0.81 1.8E-05 43.7 9.1 98 345-464 99-196 (221)
61 PF07885 Ion_trans_2: Ion chan 92.4 0.98 2.1E-05 35.9 8.3 75 239-323 3-77 (79)
62 KOG0377 Protein serine/threoni 92.3 1.2 2.6E-05 46.7 10.6 78 334-412 541-618 (631)
63 KOG0377 Protein serine/threoni 92.2 0.8 1.7E-05 47.9 9.1 78 335-412 459-578 (631)
64 PRK12309 transaldolase/EF-hand 92.1 0.67 1.4E-05 48.7 8.9 52 339-408 333-384 (391)
65 KOG0036 Predicted mitochondria 92.1 0.7 1.5E-05 48.0 8.7 74 320-406 70-143 (463)
66 KOG0036 Predicted mitochondria 91.6 0.79 1.7E-05 47.6 8.3 69 335-407 9-77 (463)
67 KOG0031 Myosin regulatory ligh 91.3 0.98 2.1E-05 40.8 7.7 64 339-407 100-163 (171)
68 PF00036 EF-hand_1: EF hand; 90.2 0.37 8.1E-06 30.9 3.0 28 342-369 2-29 (29)
69 KOG0028 Ca2+-binding protein ( 90.2 1.7 3.7E-05 39.6 8.2 67 338-409 31-97 (172)
70 KOG0038 Ca2+-binding kinase in 90.0 0.79 1.7E-05 41.0 5.8 65 339-407 107-175 (189)
71 PLN02964 phosphatidylserine de 89.1 1.6 3.4E-05 48.7 8.7 64 339-410 142-208 (644)
72 KOG0044 Ca2+ sensor (EF-Hand s 88.8 1.2 2.6E-05 42.1 6.6 68 343-415 67-134 (193)
73 PF13405 EF-hand_6: EF-hand do 85.7 1.1 2.3E-05 28.9 3.1 26 342-367 2-27 (31)
74 KOG0046 Ca2+-binding actin-bun 85.4 3 6.6E-05 44.6 7.8 66 340-408 19-84 (627)
75 KOG0034 Ca2+/calmodulin-depend 85.3 3.6 7.8E-05 38.8 7.6 60 346-410 72-133 (187)
76 KOG1029 Endocytic adaptor prot 84.9 1.4 3E-05 49.0 5.2 67 338-411 193-259 (1118)
77 PF13202 EF-hand_5: EF hand; P 83.0 1.4 3.1E-05 27.1 2.6 24 342-365 1-24 (25)
78 KOG0037 Ca2+-binding protein, 79.7 8.5 0.00018 36.9 7.8 67 343-414 127-193 (221)
79 PF13499 EF-hand_7: EF-hand do 79.5 2 4.3E-05 32.5 3.0 29 383-411 2-30 (66)
80 smart00054 EFh EF-hand, calciu 78.9 2.6 5.5E-05 25.0 2.9 26 383-408 2-27 (29)
81 KOG1955 Ral-GTPase effector RA 78.8 6.4 0.00014 41.9 7.2 72 337-415 228-299 (737)
82 KOG0500 Cyclic nucleotide-gate 77.8 71 0.0015 34.4 14.5 106 136-254 32-150 (536)
83 KOG0499 Cyclic nucleotide-gate 72.4 1.6E+02 0.0035 32.6 21.9 138 136-284 264-423 (815)
84 KOG0030 Myosin essential light 71.7 21 0.00045 32.0 7.5 60 340-405 88-147 (152)
85 PF06512 Na_trans_assoc: Sodiu 71.7 0.97 2.1E-05 44.1 -0.8 23 433-455 217-239 (239)
86 KOG4223 Reticulocalbin, calume 70.2 10 0.00022 38.5 5.9 67 338-404 198-264 (325)
87 KOG4404 Tandem pore domain K+ 69.7 34 0.00073 34.9 9.4 86 228-318 154-246 (350)
88 KOG4223 Reticulocalbin, calume 69.3 6.1 0.00013 40.0 4.2 61 344-408 167-228 (325)
89 KOG2643 Ca2+ binding protein, 68.2 3.3 7.1E-05 43.5 2.1 56 350-412 209-264 (489)
90 smart00054 EFh EF-hand, calciu 67.0 8.6 0.00019 22.5 3.2 27 342-368 2-28 (29)
91 PF01007 IRK: Inward rectifier 66.0 42 0.00091 34.7 9.7 63 261-326 80-142 (336)
92 KOG0030 Myosin essential light 64.5 27 0.00058 31.3 6.7 69 340-413 11-81 (152)
93 PF10591 SPARC_Ca_bdg: Secrete 61.9 4 8.7E-05 35.1 1.2 61 337-404 51-111 (113)
94 KOG2243 Ca2+ release channel ( 56.5 29 0.00063 41.6 6.8 119 213-331 4801-4930(5019)
95 KOG3684 Ca2+-activated K+ chan 55.4 2.4E+02 0.0052 30.3 12.9 97 221-324 245-341 (489)
96 KOG4251 Calcium binding protei 55.1 12 0.00026 36.4 3.2 63 339-404 100-163 (362)
97 cd00051 EFh EF-hand, calcium b 53.2 18 0.00038 25.6 3.3 28 383-410 2-29 (63)
98 KOG0501 K+-channel KCNQ [Inorg 52.9 3.1E+02 0.0068 30.5 13.5 40 267-310 425-464 (971)
99 KOG2643 Ca2+ binding protein, 51.8 12 0.00026 39.4 2.9 72 339-410 232-315 (489)
100 cd00052 EH Eps15 homology doma 50.8 17 0.00038 26.9 3.0 26 384-409 2-27 (67)
101 PF05517 p25-alpha: p25-alpha 50.7 59 0.0013 29.5 6.9 61 351-413 13-73 (154)
102 PF09279 EF-hand_like: Phospho 48.3 47 0.001 26.3 5.3 61 343-407 3-67 (83)
103 KOG1029 Endocytic adaptor prot 47.5 80 0.0017 35.9 8.3 69 340-416 16-84 (1118)
104 cd00213 S-100 S-100: S-100 dom 45.4 27 0.00058 28.0 3.5 29 381-409 8-38 (88)
105 smart00027 EH Eps15 homology d 44.9 28 0.0006 28.6 3.5 29 381-409 10-38 (96)
106 PF00520 Ion_trans: Ion transp 43.9 86 0.0019 28.1 7.2 21 197-217 66-86 (200)
107 KOG4065 Uncharacterized conser 41.9 94 0.002 26.9 6.2 62 344-405 71-141 (144)
108 cd00252 SPARC_EC SPARC_EC; ext 39.8 41 0.00088 29.1 3.9 29 379-407 46-74 (116)
109 cd05025 S-100A1 S-100A1: S-100 38.1 41 0.00089 27.3 3.5 29 381-409 9-39 (92)
110 KOG0751 Mitochondrial aspartat 38.0 1.5E+02 0.0033 32.0 8.3 20 350-369 46-65 (694)
111 KOG4666 Predicted phosphate ac 36.4 49 0.0011 33.7 4.3 62 341-408 297-358 (412)
112 KOG3713 Voltage-gated K+ chann 35.5 99 0.0021 33.3 6.6 58 434-491 174-263 (477)
113 cd05027 S-100B S-100B: S-100B 35.0 50 0.0011 26.9 3.5 28 382-409 9-38 (88)
114 cd05031 S-100A10_like S-100A10 32.1 57 0.0012 26.6 3.5 29 381-409 8-38 (94)
115 cd05022 S-100A13 S-100A13: S-1 32.0 62 0.0013 26.5 3.6 28 382-409 9-37 (89)
116 KOG0040 Ca2+-binding actin-bun 31.7 2.7E+02 0.0058 34.6 9.6 66 340-407 2253-2322(2399)
117 TIGR00870 trp transient-recept 31.4 7.8E+02 0.017 28.0 13.7 51 199-249 478-531 (743)
118 cd05026 S-100Z S-100Z: S-100Z 31.3 59 0.0013 26.6 3.4 28 382-409 11-40 (93)
119 PF03904 DUF334: Domain of unk 31.0 3.9E+02 0.0085 25.9 9.2 17 295-311 202-219 (230)
120 PLN03223 Polycystin cation cha 30.5 2.2E+02 0.0048 34.8 8.8 47 198-244 1300-1346(1634)
121 PF07340 Herpes_IE1: Cytomegal 30.3 54 0.0012 34.0 3.5 40 10-55 2-41 (392)
122 PF11044 TMEMspv1-c74-12: Plec 29.7 76 0.0017 22.5 3.1 21 236-256 9-29 (49)
123 cd05024 S-100A10 S-100A10: A s 29.3 3.2E+02 0.0068 22.6 7.3 30 340-369 48-77 (91)
124 COG2981 CysZ Uncharacterized p 29.2 4.6E+02 0.01 25.7 9.4 92 205-333 13-109 (250)
125 PF13833 EF-hand_8: EF-hand do 28.1 89 0.0019 22.2 3.6 28 341-368 26-53 (54)
126 KOG1545 Voltage-gated shaker-l 27.8 1.5E+02 0.0031 31.0 6.0 54 199-256 323-378 (507)
127 TIGR01710 typeII_sec_gspG gene 23.1 3.2E+02 0.0069 23.9 6.8 46 306-351 9-54 (134)
128 TIGR02921 PEP_integral PEP-CTE 21.0 1.2E+03 0.026 26.2 15.5 27 81-107 10-39 (952)
129 cd05023 S-100A11 S-100A11: S-1 20.8 4.6E+02 0.0099 21.2 7.3 29 341-369 53-81 (89)
130 PF06127 DUF962: Protein of un 20.7 4.8E+02 0.01 21.4 7.3 38 233-272 45-82 (95)
131 PF13608 Potyvirid-P3: Protein 20.1 6.9E+02 0.015 26.9 9.8 66 303-369 246-317 (445)
No 1
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-37 Score=328.15 Aligned_cols=285 Identities=20% Similarity=0.285 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHHhhccc----chhhccccccchhHHHHHHHHHHHHHHhhcC--CcCCcchhhhHhHHHHHHHHhc
Q 011091 139 EGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLS--PIAFNFLPLRIAPYIRVVFFIL 212 (494)
Q Consensus 139 E~i~l~iF~~E~~lk~~~~g~----~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~--~~~~~~~~lR~~R~lR~lrli~ 212 (494)
+.+|++||.+|+.+|+++.|+ ..|+++.||.+|.+++.++++|+++...... ......+++|.+|.+||+|.|+
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviS 1241 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVIS 1241 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence 689999999999999999885 6799999999999999999999988765321 1112457788889999999999
Q ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------------c-----cccccCcHH
Q 011091 213 NIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV--------------------Q-----GNMVFTSFG 267 (494)
Q Consensus 213 ~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~--------------------~-----g~~~F~~~~ 267 (494)
+-++++.++.++..|+|+|++++++++-++++|+++|+|+|.|+. + ...||+|.+
T Consensus 1242 ra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlg 1321 (1956)
T KOG2302|consen 1242 RAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLG 1321 (1956)
T ss_pred hcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHH
Confidence 999999999999999999999999999999999999999999742 0 146899999
Q ss_pred HHHHHHHhHhccCCCchhhH-----------hhhhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 268 TTLYQMFVLFTTSNNPDVWI-----------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDR 336 (494)
Q Consensus 268 ~s~~tLf~l~Tt~~w~dvm~-----------p~~~~~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~~~~~~~ 336 (494)
+|+++||++.|-+||.+||| |..++|+|..+|||+|.+|..|+++|||++|+.+||.+.++++.+++..
T Consensus 1322 qalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeAr 1401 (1956)
T KOG2302|consen 1322 QALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEAR 1401 (1956)
T ss_pred HHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 5567899999999999999999999999999999999988777655444
Q ss_pred HHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhhcc
Q 011091 337 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQK 416 (494)
Q Consensus 337 ~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~~~ 416 (494)
+|.++ +++.+.+.+ .+.
T Consensus 1402 RreEK-----------------------rLrrlekkr----------------------------------------R~A 1418 (1956)
T KOG2302|consen 1402 RREEK-----------------------RLRRLEKKR----------------------------------------RAA 1418 (1956)
T ss_pred HHHHH-----------------------HHHHHHHHH----------------------------------------Hhc
Confidence 33322 122221100 011
Q ss_pred cCCccccccCCCCcccHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhccc-------hhhhhHHHHHHHHHHHHHHH
Q 011091 417 EDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTVW-------LEFIDSNFLCLFLINICDIC 489 (494)
Q Consensus 417 ~~~~~~~~~~P~~y~s~~~~~l~~~v~~~~F~~~i~~iillN~i~l~~e~~~~-------~~~~~~~F~~iF~~Ei~~~~ 489 (494)
++.|-+ .. .+..++.+++.+.+.|-+.++.++|.+|.|.++.|++.+ +.+.||.|+++|+.|+.+|.
T Consensus 1419 q~kpyy-----se-yt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehyqqp~sldealkycny~ft~vfV~EaV~kl 1492 (1956)
T KOG2302|consen 1419 QRKPYY-----SE-YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHYQQPTSLDEALKYCNYRFTAVFVLEAVLKL 1492 (1956)
T ss_pred cCCccc-----cc-ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHhhhcceeeeehhHHHHHHHH
Confidence 222221 12 366889999999999999999999999999999999855 45999999999999999998
Q ss_pred hhc
Q 011091 490 LNK 492 (494)
Q Consensus 490 ~~~ 492 (494)
.+.
T Consensus 1493 vaf 1495 (1956)
T KOG2302|consen 1493 VAF 1495 (1956)
T ss_pred HHH
Confidence 764
No 2
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-35 Score=339.26 Aligned_cols=284 Identities=20% Similarity=0.357 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHhHHHHHHHHhcccHh
Q 011091 137 VYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (494)
Q Consensus 137 i~E~i~l~iF~~E~~lk~~~~g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~R~lR~lrli~~~~~ 216 (494)
..|.+|+.+|++|+++|+++.|...|++|.||++|+++++.++++++.... .....+.+|.+|+|||||.+++.++
T Consensus 876 y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~ 951 (1592)
T KOG2301|consen 876 YADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPG 951 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHccc
Confidence 469999999999999999999999999999999999999999999887754 2246789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------------------------------cccc
Q 011091 217 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV-----------------------------------QGNM 261 (494)
Q Consensus 217 lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~-----------------------------------~g~~ 261 (494)
||.++.++..++|+|++++++.++++++||++|+++|+|+. +.+-
T Consensus 952 mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~ 1031 (1592)
T KOG2301|consen 952 MRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKF 1031 (1592)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEecccc
Confidence 99999999999999999999999999999999999999841 1235
Q ss_pred ccCcHHHHHHHHHhHhccCCCchhhHhhhh-----------cCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 262 VFTSFGTTLYQMFVLFTTSNNPDVWIPAYK-----------ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 330 (494)
Q Consensus 262 ~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~-----------~~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~ 330 (494)
||||+++++++||++.|.+||+|+|+.+++ .+.+.++||+.|++++.++.+|+|+|+|++||+++.++.
T Consensus 1032 nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~ 1111 (1592)
T KOG2301|consen 1032 NFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKA 1111 (1592)
T ss_pred ccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhh
Confidence 799999999999999999999999986654 345678999999999999999999999999999887665
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHH
Q 011091 331 VSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (494)
Q Consensus 331 ~~~~~~~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i 410 (494)
... ....++.+.....++++.
T Consensus 1112 ~~~--------------------~~~~eq~~~~~~~~~l~s--------------------------------------- 1132 (1592)
T KOG2301|consen 1112 GGT--------------------FMTEEQKKRLNAAKKLGS--------------------------------------- 1132 (1592)
T ss_pred hhh--------------------hhhHHHHHHHHHHHHhcC---------------------------------------
Confidence 431 000111122222233321
Q ss_pred hhhhcccCCccccccCCCCcccHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhccc-------hhhhhHHHHHHHHH
Q 011091 411 ALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTVW-------LEFIDSNFLCLFLI 483 (494)
Q Consensus 411 ~~~~~~~~~~~~~~~~P~~y~s~~~~~l~~~v~~~~F~~~i~~iillN~i~l~~e~~~~-------~~~~~~~F~~iF~~ 483 (494)
+.+..+.|+ | .++++.....+|.++.|+++++.++++|+|.++++++.+ ...+|.+|+++|++
T Consensus 1133 --k~~~r~ipr-----~---~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~qs~~~~~~l~~in~vft~~Ft~ 1202 (1592)
T KOG2301|consen 1133 --KPPQRPIPR-----P---RNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYDQSDTYTAILTILNAVFIVLFTI 1202 (1592)
T ss_pred --CCCCCCCCC-----C---cchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 111233333 3 477899999999999999999999999999999999876 35889999999999
Q ss_pred HHHHHHhhcC
Q 011091 484 NICDICLNKT 493 (494)
Q Consensus 484 Ei~~~~~~~~ 493 (494)
|+++|+++..
T Consensus 1203 E~vLKiiA~~ 1212 (1592)
T KOG2301|consen 1203 ECILKVIALR 1212 (1592)
T ss_pred HHHHHHHHhh
Confidence 9999999853
No 3
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-33 Score=320.37 Aligned_cols=333 Identities=20% Similarity=0.249 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccc----chhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHhHHHHHHHHhcc
Q 011091 138 YEGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILN 213 (494)
Q Consensus 138 ~E~i~l~iF~~E~~lk~~~~g~----~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~R~lR~lrli~~ 213 (494)
.|..++.+|+.|..+|+.+.|. ..|+||+||++|++++++.+++.+... ..++.+|.+|++|++|++..
T Consensus 105 ~e~~f~~i~~~E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~-------~~~~~lR~frvlr~lk~vs~ 177 (1592)
T KOG2301|consen 105 AEYTFLGIFTFESVVKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHL-------YNIRALRTFRVLRALKLVSG 177 (1592)
T ss_pred cceehhhHHHHHHHHHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhccc-------cchhhhccccccchhhhccC
Confidence 4999999999999999999875 579999999999999999988766553 25789999999999999999
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------------------------------
Q 011091 214 IRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV------------------------------------ 257 (494)
Q Consensus 214 ~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~------------------------------------ 257 (494)
.++++..+.++.+++.++..+.++.++.+.+||++|.++|.|..
T Consensus 178 ~~~lk~~~~~ii~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 257 (1592)
T KOG2301|consen 178 IPGLKTRVGALIKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQPKPNNVTINDRAIPDTYCAPEGIGGLLCGN 257 (1592)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhcCCCCCceeccccCcccccCcCCCCccccCC
Confidence 99999999999999999999999999999999999999997620
Q ss_pred ------------ccccccCcHHHHHHHHHhHhccCCCchhhHhhhhc-CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011091 258 ------------QGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKA-SRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 324 (494)
Q Consensus 258 ------------~g~~~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~~-~~~~~ifFi~~iii~~~illNLfiAVI~~~F~ 324 (494)
.|.++|||++.|++++|+++|.|||+|+++++.+. +.|+.+|||+++++|+|+++|+++||+..+|+
T Consensus 258 ~~~C~~~~~~p~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~ 337 (1592)
T KOG2301|consen 258 NYVCMQLGANPNGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFA 337 (1592)
T ss_pred ccchhhcCCCCCCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHH
Confidence 13467999999999999999999999999998774 47999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHH
Q 011091 325 SQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 404 (494)
Q Consensus 325 ~~~~~~~~~~~~~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~ 404 (494)
+.+++.......++.+ .+++.+.+..+. +++.............++.. ....|.-.+..-..++..
T Consensus 338 e~r~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 403 (1592)
T KOG2301|consen 338 EERVAFEEEWQFKEPR-FQEAFEELLEKY------EDGIFLAEADGSVESGPKSK-------LFSVDSLEDVNSRVELLS 403 (1592)
T ss_pred HHHHHHHhhhhhhchH-HHHHHHHHHHHH------HHHHHHHHHhhhhccccchh-------hhhhhhhhhhhhhhhhhh
Confidence 9876654333222211 122222111111 11111111111000000000 000000000000000000
Q ss_pred HHHHHHhhhhcccCCccccccCCCCcccHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhccc-------hhhhhHHH
Q 011091 405 DLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTVW-------LEFIDSNF 477 (494)
Q Consensus 405 ~l~~~i~~~~~~~~~~~~~~~~P~~y~s~~~~~l~~~v~~~~F~~~i~~iillN~i~l~~e~~~~-------~~~~~~~F 477 (494)
+... -......+....+....+.-++..+++.++++|+++.|.|++.+++++|++++++||+.+ ..+.|.+|
T Consensus 404 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~~~~~~~~~~l~~~~~vF 482 (1592)
T KOG2301|consen 404 AVSY-KCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHYEMTKARNYLLYLGNVVF 482 (1592)
T ss_pred hhcc-cCchHhHhhccceeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 0000 000000001111111122223677889999999999999999999999999999999866 34889999
Q ss_pred HHHHHHHHHHHHhhc
Q 011091 478 LCLFLINICDICLNK 492 (494)
Q Consensus 478 ~~iF~~Ei~~~~~~~ 492 (494)
+++|+.||.+|+++-
T Consensus 483 ~~lF~~Em~~ki~al 497 (1592)
T KOG2301|consen 483 TGLFTVEMILKIYAL 497 (1592)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999864
No 4
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=255.71 Aligned_cols=200 Identities=18% Similarity=0.351 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---cchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHhHHHHHHHHhccc
Q 011091 138 YEGITLVILIIHTFFPITYEG---SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 214 (494)
Q Consensus 138 ~E~i~l~iF~~E~~lk~~~~g---~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~R~lR~lrli~~~ 214 (494)
.+-+..++|.+|+++|+.+.| .+.|..+.||.+||++++...++..... .+...+.+|..|+|||+|-|.+.
T Consensus 118 fddfifaffavemv~kmvalgifgkkcylgdtwnrldffiv~agm~eysldl-----qnvslsairtvrvlrplrainrv 192 (1956)
T KOG2302|consen 118 FDDFIFAFFAVEMVLKMVALGIFGKKCYLGDTWNRLDFFIVMAGMVEYSLDL-----QNVSLSAIRTVRVLRPLRAINRV 192 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhhheehhhhhhcccc-----cccchhhhhhhhhhhhhhHhccC
Confidence 356677889999999999865 5889999999999999998876643321 23467889999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------------------------------
Q 011091 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV------------------------------------- 257 (494)
Q Consensus 215 ~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~------------------------------------- 257 (494)
+.||.++.-+..++|-++||++++++++++|+|+|+|++.|.-
T Consensus 193 psmrilvtllldtlpmlgnvlllcffvffifgivgvqlwagllrnrcfl~enf~~~~~v~l~pyyqtee~de~pfics~~ 272 (1956)
T KOG2302|consen 193 PSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLEENFTIQGDVALPPYYQTEEDDEMPFICSLS 272 (1956)
T ss_pred chHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhccccCcccccccccCcccCCCceeeccc
Confidence 9999999999999999999999999999999999999998610
Q ss_pred ------------------------------------------------------ccccccCcHHHHHHHHHhHhccCCCc
Q 011091 258 ------------------------------------------------------QGNMVFTSFGTTLYQMFVLFTTSNNP 283 (494)
Q Consensus 258 ------------------------------------------------------~g~~~F~~~~~s~~tLf~l~Tt~~w~ 283 (494)
.|..||||++-|.+..||++|.|||.
T Consensus 273 rdngm~~c~~ip~lre~g~pc~l~~eay~~~~~~~cvnwnqyynvcr~g~~nphkgainfdnigyawiaifqvitlegwv 352 (1956)
T KOG2302|consen 273 RDNGMMGCHEIPPLREQGRPCCLSDEAYDFGASGLCVNWNQYYNVCRTGSANPHKGAINFDNIGYAWIAIFQVITLEGWV 352 (1956)
T ss_pred ccCcccccccCCCccccCCCCccchhhhccCcCcceechHHhhhhccCCCCCCcCCcccccccchhhhhhheeeeehhhh
Confidence 14578999999999999999999999
Q ss_pred hhhHhhhhcCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 284 DVWIPAYKASRWY-CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTL 342 (494)
Q Consensus 284 dvm~p~~~~~~~~-~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~~~~~~~~rr~~l 342 (494)
||||-.++...+| .+|||..+|+|+|+++||-+-||-.+|++-.+++.|-+++.|.+.+
T Consensus 353 dimyyvmdahsfynfiyfilliivgsffminKOGvviatqfsetkqresqlmreqr~r~l 412 (1956)
T KOG2302|consen 353 DIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRQRYL 412 (1956)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 9999999887777 6999999999999999999999999999987777776666665544
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.89 E-value=8.4e-23 Score=191.05 Aligned_cols=182 Identities=22% Similarity=0.349 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--chhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHhHHHHHHHHhcccH
Q 011091 138 YEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (494)
Q Consensus 138 ~E~i~l~iF~~E~~lk~~~~g~--~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~R~lR~lrli~~~~ 215 (494)
+|.+|.++|++|+++|+++.|. +.|++++||++|+++++++.++.+.............+..|++|++|.+|+++..+
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~ 81 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFR 81 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccc
Confidence 6999999999999999999997 78999999999999998887665444321100011357888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------cccccCcHHHHHHHHHhHhccCC
Q 011091 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ--------------GNMVFTSFGTTLYQMFVLFTTSN 281 (494)
Q Consensus 216 ~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~--------------g~~~F~~~~~s~~tLf~l~Tt~~ 281 (494)
.+++...++.++.+.+..++++++++++.||++|+++|++... +.++|++++.|++++++++|++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~ 161 (200)
T PF00520_consen 82 SLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEG 161 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTT
T ss_pred cccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCC
Confidence 9999999999999999999999999999999999999998641 24679999999999999999999
Q ss_pred CchhhHhhhhc-CcchhhhhhhHHHHHHHHHHHHHHHHH
Q 011091 282 NPDVWIPAYKA-SRWYCLFFVLYVLIGVYFVTNLILAVV 319 (494)
Q Consensus 282 w~dvm~p~~~~-~~~~~ifFi~~iii~~~illNLfiAVI 319 (494)
|+|++.+.+.. +.+..+||++|+++++++++|+++|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 162 WGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999776654 445569999999999999999999986
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.9e-21 Score=196.23 Aligned_cols=189 Identities=15% Similarity=0.159 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-ccchhhccccccchhHHHHHHHHHHHHHHhhc------CCcCCcchhhhHhHHHHHHH
Q 011091 137 VYEGITLVILIIHTFFPITYE-GSPIFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIRVVF 209 (494)
Q Consensus 137 i~E~i~l~iF~~E~~lk~~~~-g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~------~~~~~~~~~lR~~R~lR~lr 209 (494)
++|.+|+++|++|.++|+... .+.+|+|++-|++|++.++..++++.+..... ...+..++++|++|++|++|
T Consensus 244 ~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~K 323 (477)
T KOG3713|consen 244 YVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFK 323 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 579999999999999998864 45679999999999999999999988775542 01113457788888888889
Q ss_pred HhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCchhhHhh
Q 011091 210 FILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPA 289 (494)
Q Consensus 210 li~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~dvm~p~ 289 (494)
|.+++.+||.+..|+++|.++++.+++++.+-+.+||.+.+.+-.+.+ .++|.|+|.++||..+.|||.||+|+. |.
T Consensus 324 LaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~--~~~FtSIPa~~WWaiVTMTTVGYGDm~-P~ 400 (477)
T KOG3713|consen 324 LARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEP--DTKFTSIPAGFWWAVVTMTTVGYGDMV-PV 400 (477)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCccccchhheeeEEEeeecccCcc-cc
Confidence 999999999999999999999999999999999999998887766644 467999999999999999999999965 76
Q ss_pred hhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 290 YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 332 (494)
Q Consensus 290 ~~~~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~~~ 332 (494)
...++..+ +-.+++..+++.|+|.+|++||.++..++.+
T Consensus 401 T~~Gklva----s~cil~GVLvlAlPItiIv~nF~~~y~~~k~ 439 (477)
T KOG3713|consen 401 TVLGKLVA----SLCILCGVLVLALPITIIVNNFSMYYSELKA 439 (477)
T ss_pred ccchHHHH----HHHHHHhHHHhhcchHhHhhhHHHHHHHHHH
Confidence 66666444 5566788899999999999999998766543
No 7
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.86 E-value=3.4e-20 Score=206.38 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=161.0
Q ss_pred hcccCcccccCCCCcccCCCcccccccCCCCCc-chhHHHHHHHHHHHHHHHHHHHHhhcc-----cchhhccccccchh
Q 011091 99 FLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLT-GWESLVYEGITLVILIIHTFFPITYEG-----SPIFWKSTYTRLKV 172 (494)
Q Consensus 99 ~~E~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~i~E~i~l~iF~~E~~lk~~~~g-----~~~y~~~~wN~~d~ 172 (494)
.+|.|.+.....+++..+.....| .+...|.. ..| ++-++++++++++.+.++.-.+ .+.||+++||++|+
T Consensus 1144 LfEF~~TGGV~~s~~IqTfRL~~Y-~tt~DyfvLacE--IIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEI 1220 (1634)
T PLN03223 1144 FFEFTDGGKIEVTHRLNTIRVELY-ETYEDWVRFAME--ILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDF 1220 (1634)
T ss_pred EEEEcCCCceeeeeeEEEEEEEEe-cccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHH
Confidence 388888765543333333221111 11112211 111 2334455666777877776543 36799999999999
Q ss_pred HHHHHHHHHHHHHHhhc-------------------C----------CcC-----Ccc-----------------hhhhH
Q 011091 173 LCLLILVADFLVYGLYL-------------------S----------PIA-----FNF-----------------LPLRI 201 (494)
Q Consensus 173 ivvv~~~id~i~~~~~~-------------------~----------~~~-----~~~-----------------~~lR~ 201 (494)
+++++++..++++.... . +.. ... ..+-+
T Consensus 1221 l~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIF 1300 (1634)
T PLN03223 1221 ASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINII 1300 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876643210 0 000 000 01234
Q ss_pred hHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCC
Q 011091 202 APYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSN 281 (494)
Q Consensus 202 ~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~ 281 (494)
++.+|++|+++.+|.|+.+..++.+++|+++.++++++++++.||++|+.+||... ..|+|+..|+.+||++++++.
T Consensus 1301 LsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v---e~FSTf~sSL~TLFqMLLGDf 1377 (1634)
T PLN03223 1301 LLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS---VHFSDMTDSINSLFENLLGDI 1377 (1634)
T ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhhcCHHHHHHHHHHHHHcCc
Confidence 67889999999999999999999999999999999999999999999999999865 589999999999999999865
Q ss_pred C--chhhHhhhhcCcc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 282 N--PDVWIPAYKASRW-YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (494)
Q Consensus 282 w--~dvm~p~~~~~~~-~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~ 329 (494)
+ .+.+.+....+++ ..+||++|+++..|+++|||+|+|.++|++..++
T Consensus 1378 dYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1378 TYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred hHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 1223333334555 4699999999999999999999999999987544
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2e-17 Score=162.88 Aligned_cols=187 Identities=12% Similarity=0.115 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-chhhccccccchhHHHHHHHHHHHHHHhhcCCcC------CcchhhhH---hHHH
Q 011091 136 LVYEGITLVILIIHTFFPITYEGS-PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIA------FNFLPLRI---APYI 205 (494)
Q Consensus 136 ~i~E~i~l~iF~~E~~lk~~~~g~-~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~------~~~~~lR~---~R~l 205 (494)
.++|..|+++|+.|.++++.++.. ..|++|..|++|++.++..++.+..........+ -...++|+ .|++
T Consensus 256 FiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVF 335 (507)
T KOG1545|consen 256 FIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVF 335 (507)
T ss_pred HhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHh
Confidence 468999999999999999998765 4699999999999999999998877665432111 12234444 5555
Q ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCchh
Q 011091 206 RVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDV 285 (494)
Q Consensus 206 R~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~dv 285 (494)
|++++-+++++|+.+-+++..|+.++.-+++++++-+.+||- -..|++.++...+|+++++|+|+..+.+||.||+|+
T Consensus 336 RIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsS--avYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm 413 (507)
T KOG1545|consen 336 RIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSS--AVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDM 413 (507)
T ss_pred hheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--eeeeeecCCCccCCCcCcccceEEEEEEEeeccccc
Confidence 555555689999999999999999987665555554444442 222444455568999999999999999999999995
Q ss_pred hHhhhhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 286 WIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (494)
Q Consensus 286 m~p~~~~~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~ 329 (494)
. |....++..+ +..-|...+-+.|++-||+.||+....+
T Consensus 414 ~-P~TvgGKIVG----slCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 414 V-PVTVGGKIVG----SLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred e-ecccCceehh----hHHhhhhheEecccccEEEecccceeec
Confidence 4 8877777654 3333455567789999999999975433
No 9
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.63 E-value=5.5e-15 Score=156.50 Aligned_cols=180 Identities=22% Similarity=0.374 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhccccccchhHHHHHHHHHHHHHHhhc------------CCcCC-cc---------
Q 011091 139 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL------------SPIAF-NF--------- 196 (494)
Q Consensus 139 E~i~l~iF~~E~~lk~~~~g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~------------~~~~~-~~--------- 196 (494)
-+++++.|+...+.|+...| +.|++++||++|+++++++++.++...... .+... +.
T Consensus 217 f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~ 295 (425)
T PF08016_consen 217 FVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQL 295 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHH
Confidence 44566677788888888888 679999999999999988887665553311 00000 00
Q ss_pred -----hhhhHhHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHH
Q 011091 197 -----LPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLY 271 (494)
Q Consensus 197 -----~~lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~ 271 (494)
..+-++-.+|.+|+++.++.+..+.+++.++.++++..+++++++++.||.+|+.+||... ..|+|+..|+.
T Consensus 296 ~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~---~~f~s~~~s~~ 372 (425)
T PF08016_consen 296 YRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS---EDFSSFSSSLV 372 (425)
T ss_pred HHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cccCCHHHHHH
Confidence 1122346678888889999999999999999999999999999999999999999999754 58999999999
Q ss_pred HHHhHhccCCCchhhHhhhhcCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 272 QMFVLFTTSNNPDVWIPAYKASRWYC-LFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (494)
Q Consensus 272 tLf~l~Tt~~w~dvm~p~~~~~~~~~-ifFi~~iii~~~illNLfiAVI~~~F~~ 325 (494)
+++.++-++.--+ +....+++.+ +||++|+++..++++|+++|++.++|++
T Consensus 373 tl~~~l~g~~~~~---~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 373 TLFRMLLGDFDYD---ELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred HHHHHhcCCCchh---hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999888753222 2334566664 9999999999999999999999999975
No 10
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.63 E-value=1.5e-14 Score=160.84 Aligned_cols=278 Identities=15% Similarity=0.137 Sum_probs=195.1
Q ss_pred HHHHHHhHHHHHcCCCCChhhcccCCchhhhHHHHHHhHHHHHHHHHH----HHH---------HHHhhcccCcccccCC
Q 011091 44 YQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNY----FAL---------IVLNFLEKPLWCAKTG 110 (494)
Q Consensus 44 ~~~a~~~v~da~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----f~l---------l~l~~~E~p~~~~~~~ 110 (494)
+...-.+..-|.||.+.+...+...+.+...++-.+-.+.|....... |.+ .+-..+|.|+.....+
T Consensus 366 L~~~~~~g~l~~Y~~gGY~~~l~~sr~es~~~i~~L~~~~WlD~~TrAvfidftlYNa~inlF~~v~L~vE~p~~G~~~p 445 (798)
T KOG3599|consen 366 LLGLEHWGLLASYGGGGYVVLLSLSRTESLKAISYLRENNWLDRGTRAVFIDFTLYNADINLFCVVTLRVEFPPTGGVLP 445 (798)
T ss_pred ccccccccceeEecCCCEEEEecCchHhHHHHHHHHHHhccccCCCcEEEEeccccCCCCCeeEEEEEEEEecCcccccc
Confidence 444455556666766666666655555555555555444444332222 111 1223388888877766
Q ss_pred CCcccCCCcccccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccchhhccccccchhHHHHHHHHHHHHHHhhcC
Q 011091 111 VGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLS 190 (494)
Q Consensus 111 ~~~~~~~~~~~~~~~~~p~~~~~~~~i~E~i~l~iF~~E~~lk~~~~g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~ 190 (494)
+++..+-+..++...+.-+... ..++-.++.+.|+++.+.++.-.+.+.|++++||++|+.++.++++-+++......
T Consensus 446 s~~l~S~~L~~~~~~~~~~~~l--~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~ 523 (798)
T KOG3599|consen 446 SLQLESFKLLRYVSAGSSLIML--CEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTG 523 (798)
T ss_pred cceEEEEehhhhhccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444433322222211 12345556677888999998867776799999999999999999887766644321
Q ss_pred -------------CcCC-c--------------chhhhHhHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 191 -------------PIAF-N--------------FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFL 242 (494)
Q Consensus 191 -------------~~~~-~--------------~~~lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~ 242 (494)
+... + .-.+-++-.+|.+|+++.++.++.+-+++.+++|+++.+.+.+++++
T Consensus 524 l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~ 603 (798)
T KOG3599|consen 524 LADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILF 603 (798)
T ss_pred HHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 0 01122355678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhcc-CCCchhhHhhhhcCcchh-hhhhhHHHHHHHHHHHHHHHHHH
Q 011091 243 LFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTT-SNNPDVWIPAYKASRWYC-LFFVLYVLIGVYFVTNLILAVVY 320 (494)
Q Consensus 243 ~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt-~~w~dvm~p~~~~~~~~~-ifFi~~iii~~~illNLfiAVI~ 320 (494)
+.||.+|+.+||... .+|+|+.+|+.+++..+-+ .+..++ ...+++.+ +||.+|++++.++++|||+|+|.
T Consensus 604 ~aya~l~~llfG~~v---~~f~~f~~s~~t~~~~~~G~~~~~~i----~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~ 676 (798)
T KOG3599|consen 604 FAYAQLGYLLFGNQV---SDFRTFVASIVTLLRYILGDFCPAEI----FHANRILGPLLFLTYVFVVSFILLNLFVAIIN 676 (798)
T ss_pred HHHHHHHHHHcCCcc---CChHHHHHHHHHHHHHHhccCCcccc----ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 6899999999999988777 233332 34577775 99999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011091 321 DSFKSQLAKQ 330 (494)
Q Consensus 321 ~~F~~~~~~~ 330 (494)
+.|.+.....
T Consensus 677 ~~~~evk~~~ 686 (798)
T KOG3599|consen 677 DTYGEVKADL 686 (798)
T ss_pred HhHHHHhHHH
Confidence 9999875443
No 11
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.3e-14 Score=141.41 Aligned_cols=182 Identities=15% Similarity=0.168 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-cchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHhHHHHHHHHhcccH
Q 011091 137 VYEGITLVILIIHTFFPITYEG-SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (494)
Q Consensus 137 i~E~i~l~iF~~E~~lk~~~~g-~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~R~lR~lrli~~~~ 215 (494)
.++..|+++|+.|.++++++.. .-+|.|+...++|++.++..++++++.-.- ...+..-.+|++|++|.++.-++++
T Consensus 231 clDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~--DVSGaFVTLRVFRVFRIFKFSRHSQ 308 (632)
T KOG4390|consen 231 CLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE--DVSGAFVTLRVFRVFRIFKFSRHSQ 308 (632)
T ss_pred EecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc--cccceeEEEEeeeeeeeeeeccccc
Confidence 3688999999999999998754 446889999999999888887776544211 1123445789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCchhhHhhhhcCcc
Q 011091 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRW 295 (494)
Q Consensus 216 ~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~ 295 (494)
+||.+--++..+..+++-+++-+...+++||.+-+..-.|. ..++|.+++.|+|--.+.+||-||+|+. |....+.
T Consensus 309 GLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~--~at~FTsIPaaFWYTIVTmTTLGYGDMV-p~TIaGK- 384 (632)
T KOG4390|consen 309 GLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGS--SATKFTSIPAAFWYTIVTMTTLGYGDMV-PSTIAGK- 384 (632)
T ss_pred ccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc--cccccccCcHhHhhheeeeeeccccccc-hHHHHHH-
Confidence 99999999999999998888888888888886554443333 4589999999999999999999999965 5443333
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 296 YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQL 327 (494)
Q Consensus 296 ~~ifFi~~iii~~~illNLfiAVI~~~F~~~~ 327 (494)
-|.+..-++..+++.|++-||+.||+...
T Consensus 385 ---IfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 385 ---IFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred ---HhhhhhcccceEEEeccccEEEechhHHH
Confidence 34455556667788999999999999743
No 12
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.22 E-value=1e-09 Score=124.29 Aligned_cols=190 Identities=12% Similarity=0.072 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhccccccchhHHHHHHHHHHHHHHhh---c--------CCc--C-------Ccchh
Q 011091 139 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLY---L--------SPI--A-------FNFLP 198 (494)
Q Consensus 139 E~i~l~iF~~E~~lk~~~~g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~---~--------~~~--~-------~~~~~ 198 (494)
....+..+.++....++..|...|+++.||++|++.+.+.+..++..... . .+. . .....
T Consensus 395 ~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 474 (743)
T TIGR00870 395 IVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAF 474 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Confidence 34555566677777777788888999999999986655444433221110 0 000 0 01122
Q ss_pred hhHhHHHHHHHHhcccHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc--c--------------cc
Q 011091 199 LRIAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTVQ--G--------------NM 261 (494)
Q Consensus 199 lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~-~i~~v~~ll~l~~~ifAilg~~lF~~~~~--g--------------~~ 261 (494)
.-++..+|.+.+.+.++.+--+..++.+++. +++..+++++++++-||+..+++|+...+ + ..
T Consensus 475 ~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (743)
T TIGR00870 475 ALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGN 554 (743)
T ss_pred HHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 3345666666777777776667778888889 99999999999999999999999975321 1 15
Q ss_pred ccCcHHHHHHHHHhHhccCCCchhhHhhhhcCcc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 262 VFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRW-YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 330 (494)
Q Consensus 262 ~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~-~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~ 330 (494)
.|+++..++.++|..+=+.+ |...+.-...+| ..++|++|+++...+++||+||++.++|++..+++
T Consensus 555 ~f~~~~~s~~~lf~~~~G~~--~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~ 622 (743)
T TIGR00870 555 AYSTLFETSQELFWAIIGLG--DLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDA 622 (743)
T ss_pred cccCHHHHHHHHHHHHcCCc--ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Confidence 69999999999997765542 221111111234 45999999999999999999999999999875554
No 13
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.8e-08 Score=105.10 Aligned_cols=211 Identities=13% Similarity=0.062 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc----------cchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHhHHH
Q 011091 136 LVYEGITLVILIIHTFFPITYEG----------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYI 205 (494)
Q Consensus 136 ~i~E~i~l~iF~~E~~lk~~~~g----------~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~R~l 205 (494)
+++|++.+++|.+|.+++++..| +-+|-+.+..++|+++++.+++-+.+..-........++.+|++++|
T Consensus 128 ~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQIL 207 (654)
T KOG1419|consen 128 YILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQIL 207 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHH
Confidence 46899999999999999999654 33588999999999988877433221100000001124455666666
Q ss_pred HHHHHhcccHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-hccc--ccccccCcHHHHHHHHHhHhccCC
Q 011091 206 RVVFFILNIRQLRDTLFVLAGM-LGTYLNVLALGLLFLLFSSWLAYVIF-EDTV--QGNMVFTSFGTTLYQMFVLFTTSN 281 (494)
Q Consensus 206 R~lrli~~~~~lr~l~~~l~~s-l~~i~~v~~ll~l~~~ifAilg~~lF-~~~~--~g~~~F~~~~~s~~tLf~l~Tt~~ 281 (494)
|.+|+=++- +..+++.++.-+ -+++.-... +.++.++|+-+-+++= .+.. .++..|+++.+|+|+=.+.+||.|
T Consensus 208 Rmlr~DRrg-gTWKLLGSvV~aH~~ELiTt~Y-IGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIG 285 (654)
T KOG1419|consen 208 RMLRMDRRG-GTWKLLGSVVYAHSKELITTWY-IGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIG 285 (654)
T ss_pred HHHHhhccC-chhhhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeec
Confidence 666555443 333444444333 233332222 3333344444444443 3321 234679999999999999999999
Q ss_pred CchhhHhhhhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHhhccCC
Q 011091 282 NPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ-VSEMDRMRRR----TLGKAFNLIDNYN 353 (494)
Q Consensus 282 w~dvm~p~~~~~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~-~~~~~~~rr~----~l~~af~~L~~~~ 353 (494)
|+|.. |..--++.. .+.+-+-.+-+..++-+++-..|.=..+++ -||-..+||. .++.+|.....+.
T Consensus 286 YGDk~-P~TWlGr~l----aa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 286 YGDKT-PQTWLGRLL----AACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred cCCcC-cccchhHHH----HHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhccc
Confidence 99986 433223322 222223334556788888888887544443 3333444442 3677888765544
No 14
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.51 E-value=6.4e-06 Score=90.57 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=133.6
Q ss_pred HHHHHH---HHHHHHHHHHHhhcccchhhccccccchhHHHHHHHHHHHHHHhhcC-----C-------cCC--------
Q 011091 138 YEGITL---VILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLS-----P-------IAF-------- 194 (494)
Q Consensus 138 ~E~i~l---~iF~~E~~lk~~~~g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~-----~-------~~~-------- 194 (494)
+|...+ +=++.+.+-.++..|...|+++.||++|++.+.+.+..++.-..... . ...
T Consensus 386 vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~ 465 (822)
T KOG3609|consen 386 LEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLA 465 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHH
Confidence 355443 33467777788899999999999999999999988887766543210 0 000
Q ss_pred --cchhhhHhHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cc-----c
Q 011091 195 --NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV-------QG-----N 260 (494)
Q Consensus 195 --~~~~lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~-------~g-----~ 260 (494)
...+--++-.+|.+.+.+.++.+--+--++.+++..+...++++.++++.|++--.+++..-. .+ .
T Consensus 466 E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~ 545 (822)
T KOG3609|consen 466 EGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTT 545 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccc
Confidence 012233566677777777777666666678899999999999999999999988888875311 01 1
Q ss_pred cccCcHHHHHHHHHhHhc-cCCCchhhHhhhhc--Cc-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 261 MVFTSFGTTLYQMFVLFT-TSNNPDVWIPAYKA--SR-WYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 330 (494)
Q Consensus 261 ~~F~~~~~s~~tLf~l~T-t~~w~dvm~p~~~~--~~-~~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~ 330 (494)
..|.|+..++-+||=-+- ..+=.++.. .|++ .. +..+-|.+|.++...+++||.||.+.++|++.....
T Consensus 546 ~~fsti~eS~~tLFWsiFglv~~~~~~l-~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~A 618 (822)
T KOG3609|consen 546 DSFSTIGESSKTLFWSIFGLVVLGSVVL-PYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDA 618 (822)
T ss_pred cccccHHHHHHHHHHHHHhcccccceec-ccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcc
Confidence 259999999888774332 222112221 2222 23 345899999999999999999999999999876554
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.21 E-value=0.00021 Score=82.30 Aligned_cols=158 Identities=13% Similarity=0.199 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------c---------cchhhccccccchhHHHHHHHHHHHHHHhhcCC-cCCcchhhh
Q 011091 137 VYEGITLVILIIHTFFPITYE------G---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSP-IAFNFLPLR 200 (494)
Q Consensus 137 i~E~i~l~iF~~E~~lk~~~~------g---------~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~-~~~~~~~lR 200 (494)
+++.++-++|++|+++++... | .++|++ .|-++|++.++.. +++........ .......+|
T Consensus 96 ~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~--~~i~~~~~~~~~~~~~~~~l~ 172 (823)
T PLN03192 96 IADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-TWFLMDVASTIPF--QALAYLITGTVKLNLSYSLLG 172 (823)
T ss_pred eHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-HhHHHHHHHHhHH--HHHHHHhcCCccchHHHHHHH
Confidence 468999999999999987531 1 134764 4889998877665 22222221100 001122344
Q ss_pred HhHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc-------ccc------CcH
Q 011091 201 IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-TVQGN-------MVF------TSF 266 (494)
Q Consensus 201 ~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~-~~~g~-------~~F------~~~ 266 (494)
++|++|..|+.+....+.+....-. ..-.+..++++++++.-.+|.+.+.+-.. ..++. ++| ..+
T Consensus 173 llrl~Rl~ri~~~~~~le~~~~~~~-~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Y 251 (823)
T PLN03192 173 LLRFWRLRRVKQLFTRLEKDIRFSY-FWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRY 251 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHH
Confidence 4444444444333333333221100 01122223333333333334333333211 11111 122 235
Q ss_pred HHHHHHHHhHhccCCCchhhHhhhhcCcchhhh
Q 011091 267 GTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLF 299 (494)
Q Consensus 267 ~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~~~if 299 (494)
..|+++.++++||.|++|+. |.....++..++
T Consensus 252 i~slYwai~TmtTVGYGDi~-p~t~~E~i~~i~ 283 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDLH-AVNTIEMIFIIF 283 (823)
T ss_pred HHHHHHHHHHHhhccCCCcC-CCccchHHHHHH
Confidence 66999999999999999985 544344444333
No 16
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.81 E-value=0.0017 Score=75.04 Aligned_cols=228 Identities=14% Similarity=0.196 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhhcc-------cchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhh----hHhHHHHHHHH
Q 011091 142 TLVILIIHTFFPITYEG-------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPL----RIAPYIRVVFF 210 (494)
Q Consensus 142 ~l~iF~~E~~lk~~~~g-------~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~l----R~~R~lR~lrl 210 (494)
-+..+++|.+=++...+ .+.||.+.||++|.+.+...++..+.-.... +.....+++ -++=.+|.+-.
T Consensus 831 ~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-~~~~~GRvIl~~d~i~~t~rLl~~ 909 (1381)
T KOG3614|consen 831 WIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-DSIYSGRVILCFDFILFTLRLLHY 909 (1381)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-cceecceeeeeehHHHHHHHHhhh
Confidence 33445577776665432 2459999999999999888877754432210 011111111 11222344444
Q ss_pred hcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccccCcH-HHHHHHHHh--------HhccC
Q 011091 211 ILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG-NMVFTSF-GTTLYQMFV--------LFTTS 280 (494)
Q Consensus 211 i~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g-~~~F~~~-~~s~~tLf~--------l~Tt~ 280 (494)
+.-++.+-=-+..+.+.++.+..+++++++.++.|++.--.+-....+. ..-|+++ ..-.+.+|- ..|.+
T Consensus 910 f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~y~PYlmifGeV~a~eID~~~~e 989 (1381)
T KOG3614|consen 910 FTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIFYWPYLMLFGEVPADEIDTCTCE 989 (1381)
T ss_pred eeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHhccccHhhhhhhccc
Confidence 4445555555556677888888888888888888875432222211111 1124332 233444441 11111
Q ss_pred CC--------chhhH-hhhhcCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011091 281 NN--------PDVWI-PAYKASRWY-CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLID 350 (494)
Q Consensus 281 ~w--------~dvm~-p~~~~~~~~-~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~~~~~~~~rr~~l~~af~~L~ 350 (494)
-| ++-.- |.-..+.|. .+--+.|+++.+.+++||+||.....|.+..+..-+ -.+-.|-.+...|..=-
T Consensus 990 ~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~-iWkFQRY~limeyh~rP 1068 (1381)
T KOG3614|consen 990 KSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQ-IWKFQRYSLIMEYHSRP 1068 (1381)
T ss_pred ccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhhcCC
Confidence 11 11100 111112333 477788999999999999999999999987655433 22333333444443211
Q ss_pred cCCCcccCHHHHHHHHHHhhc
Q 011091 351 NYNVGFLNKEQCIKLFEELNK 371 (494)
Q Consensus 351 ~~~~g~l~~~~~~~l~~~l~~ 371 (494)
.-+..++-..+..-+++.+.+
T Consensus 1069 ~LPPPfiilsHi~l~~~r~~~ 1089 (1381)
T KOG3614|consen 1069 ALPPPFIILSHIYLLLKRLSN 1089 (1381)
T ss_pred CCCCCcHHHHHHHHHHHHHHc
Confidence 112344444555555556544
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.76 E-value=3.7e-05 Score=59.30 Aligned_cols=65 Identities=29% Similarity=0.472 Sum_probs=52.5
Q ss_pred HHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 342 l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
++++|..+|.+++|+|+.+++...++.+..... +...++.+..+|+..|+++||.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678999999999999999999999988853221 22234456677999999999999999998764
No 18
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.63 E-value=0.00042 Score=76.17 Aligned_cols=166 Identities=11% Similarity=0.181 Sum_probs=120.1
Q ss_pred ccchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcch----h-hhHhHHHHHHHHhcccHhHHHHHHHHHHHHHHHH
Q 011091 158 GSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFL----P-LRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYL 232 (494)
Q Consensus 158 g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~----~-lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~ 232 (494)
.++.|+.+.-|+++.++...+++-....... .....+ + --.+-..+.+.++.+.+..-..+..+...+++++
T Consensus 587 qk~~Y~~~i~Nimew~iyts~li~v~~~~~~---~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktfl 663 (929)
T KOG0510|consen 587 QKRHYFMDIENIMEWFIYTSALITVYPLFFE---ITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFL 663 (929)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhheeehhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHH
Confidence 3567999999999988776665432211110 000111 1 1124556778888888877777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCC-Cc-hhhHhhhhcCc-----chhhhhhhHHH
Q 011091 233 NVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSN-NP-DVWIPAYKASR-----WYCLFFVLYVL 305 (494)
Q Consensus 233 ~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~-w~-dvm~p~~~~~~-----~~~ifFi~~ii 305 (494)
..+.++.++++-|++--+.+|+... .|+|.+-+.+.-|+++-+++ +. +...+.+..++ .+.+-|++|.+
T Consensus 664 k~f~vfs~lliaF~lsFYVll~~~~----eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~I 739 (929)
T KOG0510|consen 664 KSFMVFSILLIAFGLSFYVLLNKSS----EFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTI 739 (929)
T ss_pred HHHHHHHHHHHHhhhhheeeecCCC----CcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHH
Confidence 8999999999999999899998865 39999999999999999874 44 33345554332 23578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 306 IGVYFVTNLILAVVYDSFKSQLAKQ 330 (494)
Q Consensus 306 i~~~illNLfiAVI~~~F~~~~~~~ 330 (494)
+...++|||.+|+-++--++..++.
T Consensus 740 fmtIvLMNLLiGLAV~DIq~vqk~A 764 (929)
T KOG0510|consen 740 FMTIVLMNLLIGLAVGDIQGVQKHA 764 (929)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 9999999999999998877765443
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.60 E-value=0.00029 Score=58.15 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcc-CCCcccCHHHHHHHHHH-hhcccCCCCCCH-HHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 340 RTLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 340 ~~l~~af~~L~~-~~~g~l~~~~~~~l~~~-l~~~~~~p~~~~-~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
..++++|..++. +++|+++.+++..+++. +.. .++. ++...+++.+|.++||.|+.+||..+...+..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-----~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPH-----LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-----hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 357899999999 99999999999998888 632 3555 88999999999999999999999887765543
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.52 E-value=0.00064 Score=56.00 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=57.6
Q ss_pred HHHHHHHHhhc-cCCCc-ccCHHHHHHHHHH-----hhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 340 RTLGKAFNLID-NYNVG-FLNKEQCIKLFEE-----LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 340 ~~l~~af~~L~-~~~~g-~l~~~~~~~l~~~-----l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
..+++||..+| .+|+| .++.+++..+++. +. ...++++...+++.+|.+++|.|+.+||..+...+..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-----~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-----EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 35789999998 68999 5999999999987 52 3467888999999999999999999999888765544
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.35 E-value=0.0018 Score=54.11 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhh
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 414 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~ 414 (494)
...+.++|..+|.+++|.++.+++...++.+ +.++++...++...|.+++|.|+.+||..++..+....
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3467899999999999999999998888764 36778999999999999999999999998887665443
No 22
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.35 E-value=0.0012 Score=50.57 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=54.8
Q ss_pred HHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhh
Q 011091 343 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALR 413 (494)
Q Consensus 343 ~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~ 413 (494)
+++|..+|.+++|.++.+++...++.+ +.++++.+.+++..|.+++|.|+.+||..++..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 468999999999999999988877765 2477889999999999999999999999888766544
No 23
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.24 E-value=0.0011 Score=60.62 Aligned_cols=65 Identities=28% Similarity=0.502 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 338 rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
.++.++.||+++|.+++|+|+...+...++.+. .++++++++.+++..|++++|.|+.++|.+++
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 357789999999999999999999998888874 57899999999999999999999999998765
No 24
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=97.11 E-value=0.0077 Score=69.05 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=87.1
Q ss_pred HHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------------------------
Q 011091 208 VFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV------------------------------ 257 (494)
Q Consensus 208 lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~------------------------------ 257 (494)
+-++.+-..+..+++++-+.-++|.--.++-++++++|+|+|+..|.+..
T Consensus 2399 FDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc 2478 (2706)
T KOG3533|consen 2399 FDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETC 2478 (2706)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccC
Confidence 44555667788888888888888988899999999999999999998631
Q ss_pred -------------ccccccCcHHHHHHHHHhHhc---------cCCCchhhHh-hhhcCc--chhhhhhhHHHHHHHHHH
Q 011091 258 -------------QGNMVFTSFGTTLYQMFVLFT---------TSNNPDVWIP-AYKASR--WYCLFFVLYVLIGVYFVT 312 (494)
Q Consensus 258 -------------~g~~~F~~~~~s~~tLf~l~T---------t~~w~dvm~p-~~~~~~--~~~ifFi~~iii~~~ill 312 (494)
+.+..=+.--.++=||+.++. +.|-+||+.. +-...- |-.+|=..|.++...|++
T Consensus 2479 ~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVL 2558 (2706)
T KOG3533|consen 2479 PSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVL 2558 (2706)
T ss_pred CCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 011122334455555554433 2455677632 211111 123566666777777999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 313 NLILAVVYDSFKSQLAKQVSEMDRMR 338 (494)
Q Consensus 313 NLfiAVI~~~F~~~~~~~~~~~~~~r 338 (494)
||..|||+|+|.+.+.++-+|+...+
T Consensus 2559 NLIFGVIIDTFaDLRsEKqkKEeILK 2584 (2706)
T KOG3533|consen 2559 NLIFGVIIDTFADLRSEKQKKEEILK 2584 (2706)
T ss_pred HHHHHhhhhhHHHHHhhhhHHHHHHh
Confidence 99999999999998766544444333
No 25
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.10 E-value=0.0033 Score=52.27 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=55.5
Q ss_pred HHHHHHHhhc-cCCCc-ccCHHHHHHHHHHh-hcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 341 TLGKAFNLID-NYNVG-FLNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 341 ~l~~af~~L~-~~~~g-~l~~~~~~~l~~~l-~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
.++++|...+ .+++| .|+.+++..+++.. .+.- ....++.+...+++.+|.++||.|+.+||..++..+..
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~-~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFL-SSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhc-ccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 4678999999 56888 49999999888663 2111 12347788999999999999999999999988765544
No 26
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.08 E-value=0.0027 Score=57.59 Aligned_cols=65 Identities=26% Similarity=0.462 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
.+.+++||..+|.+++|+|+.+++.+.+..+. .+.+.+++..+++..|.++||.|+.+||..+..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 34688999999999999999999999998884 466789999999999999999999999987653
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.04 E-value=0.006 Score=49.85 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcc--CCCcccCHHHHHHHHHH-hhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHh
Q 011091 338 RRRTLGKAFNLIDN--YNVGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (494)
Q Consensus 338 rr~~l~~af~~L~~--~~~g~l~~~~~~~l~~~-l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~ 411 (494)
+...++++|..+|. +++|.++.+++...++. +..... .+.+.++...++..+|.+++|.|+.+||..++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~-~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLK-NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34558899999999 79999999999888865 321111 235688999999999999999999999988876543
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.03 E-value=0.0049 Score=51.23 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcc-CC-CcccCHHHHHHHHHH-hhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhhc
Q 011091 340 RTLGKAFNLIDN-YN-VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 415 (494)
Q Consensus 340 ~~l~~af~~L~~-~~-~g~l~~~~~~~l~~~-l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~~ 415 (494)
..+.++|..+|. ++ +|.|+.+++...++. +.... ..+.++++...+++.+|.+++|.|+.+||..++..+.+-..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l-g~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~ 85 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL-KNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACE 85 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh-hccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 357899999997 87 699999999888875 21100 12457789999999999999999999999988876555443
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.03 E-value=0.0041 Score=51.41 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=57.4
Q ss_pred HHHHHHHHhhc-cCCCc-ccCHHHHHHHHHH-hhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 340 RTLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 340 ~~l~~af~~L~-~~~~g-~l~~~~~~~l~~~-l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
..++++|..+| .+++| .|+.+++..+++. +..... ...++++.+.+++.+|.+++|.|+.+||..+...+..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 34789999997 99999 4999999998875 532111 1357789999999999999999999999887765543
No 30
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.92 E-value=0.0053 Score=45.06 Aligned_cols=61 Identities=30% Similarity=0.484 Sum_probs=52.6
Q ss_pred HHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 342 l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
+.++|..+|.+++|.++.+++...++.+. +..+.+....+|...|.+++|.|+.+||..+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45788899999999999999988888763 56788889999999999999999999997653
No 31
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.0095 Score=53.78 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
...+.+||.+.|.+++|.|+...+.+.+++|. |.+++++...+.++.|.++||.|+.+||..++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 35577999999999999999999999999994 78999999999999999999999999998764
No 32
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.71 E-value=0.19 Score=55.93 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------------ccccCcHHHHHHHHHhHhccCCCchhhHhhhhc--
Q 011091 228 LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG-------------NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKA-- 292 (494)
Q Consensus 228 l~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g-------------~~~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~~-- 292 (494)
+..++..+++.++|++=||..-+.+|.+-++. ....+++..+++++|...-+ ..|. +....
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig--~~dl--~~~~~~~ 615 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIG--MGDL--EACENTD 615 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhh--hhhh--hhccccc
Confidence 67888899999999999999999999864321 12356677888888877443 3332 22222
Q ss_pred Ccch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 293 SRWY-CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 330 (494)
Q Consensus 293 ~~~~-~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~ 330 (494)
-+|. .+-|++|+++...+++||+||..-++|....+++
T Consensus 616 ~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 616 YPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 2343 4899999999999999999999999999876554
No 33
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.69 E-value=0.011 Score=48.84 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=54.0
Q ss_pred HHHHHHHh-hccCCCc-ccCHHHHHHHHHHhh-cccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 341 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEELN-KYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 341 ~l~~af~~-L~~~~~g-~l~~~~~~~l~~~l~-~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
.+..+|.. .+.++++ .|+++++..+++.-. .+.. .+.++.+...+++.+|.++||.|+.+||..+...+..
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~-~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK-NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 46788888 6666765 999999988887641 1111 2456788999999999999999999999887765543
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.63 E-value=0.0057 Score=45.05 Aligned_cols=51 Identities=27% Similarity=0.460 Sum_probs=42.7
Q ss_pred CCcccCHHHHHHHHHHhhcccCCCC-CCHHHHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 353 NVGFLNKEQCIKLFEELNKYRTLPN-ISREEFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 353 ~~g~l~~~~~~~l~~~l~~~~~~p~-~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
++|.++.+++...++.+. .+ +++++...+|...|.+++|.|+.+||..+..
T Consensus 1 ~~G~i~~~~~~~~l~~~g-----~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-----IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-----SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-----CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 368889999888886652 24 8999999999999999999999999987653
No 35
>PTZ00184 calmodulin; Provisional
Probab=96.60 E-value=0.014 Score=51.64 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=54.3
Q ss_pred HHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 341 ~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
.+..+|..+|.+++|.++.+++.+.++.+ .+.++.++...+++..|++++|.|+.+||..+.
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 45688999999999999999998888776 356788999999999999999999999997654
No 36
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.58 E-value=0.023 Score=59.71 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=67.5
Q ss_pred cchhhhHhHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHH
Q 011091 195 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 274 (494)
Q Consensus 195 ~~~~lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf 274 (494)
...+++.+-+++.+.++.+++.+.+...++. . -+.++.+..+++|+++|...+++.. .+.+.++.+|++..+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~--l~~~~~~~~l~~~~~~g~~~~~~~f--~~~~~s~~dA~y~sv 177 (393)
T PRK10537 106 WLKFLIGYCIVLLVALLIYRRDFDRSSLAAG----T--LFAVISITSLLFYSTFGALYLGDGF--SPPIESLSTAFYFSI 177 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHHcccc--CcCCCCHHHHHHhhh
Confidence 4566777777888888877766666532222 1 2334444556688899988887632 256889999999999
Q ss_pred hHhccCCCchhhHhhhhcCcchhhhhhhHHHHHH
Q 011091 275 VLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGV 308 (494)
Q Consensus 275 ~l~Tt~~w~dvm~p~~~~~~~~~ifFi~~iii~~ 308 (494)
+++||.|++|+. |....++ +|-+++++.|.
T Consensus 178 vt~tTvGyGdi~-p~t~~gr---l~~i~~ii~Gi 207 (393)
T PRK10537 178 VTMSTVGYGDIV-PVSESAR---LFTISVIILGI 207 (393)
T ss_pred eeeecccCCCCC-CCCHHHH---HHHHHHHHHHH
Confidence 999999999985 4433333 44455554443
No 37
>PTZ00183 centrin; Provisional
Probab=96.56 E-value=0.017 Score=51.80 Aligned_cols=64 Identities=28% Similarity=0.417 Sum_probs=55.6
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
..+.++|..+|.+++|.++.+++...+..+. +.+++++...++..+|.+++|.|+.+||..+..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELG-----ETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 4577899999999999999999988887662 568899999999999999999999999977653
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.42 E-value=0.022 Score=46.86 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=54.3
Q ss_pred HHHHHHHhhcc-CC-CcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHh
Q 011091 341 TLGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (494)
Q Consensus 341 ~l~~af~~L~~-~~-~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~ 411 (494)
.+.+.|...+. +| +|+++.+++...++..... ..+.++++...+++.+|.+++|.|+.+||..+..-+.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l--g~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTI--GSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 46677888877 56 8999999998888642111 2457899999999999999999999999987765443
No 39
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.41 E-value=0.014 Score=52.86 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=59.0
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i 410 (494)
..+++||..+|.+++|.++.+++...++.+. ...++.+...++...|.+++|.|+.+||..++...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 4578999999999999999999999998884 45788999999999999999999999999888643
No 40
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.033 Score=57.51 Aligned_cols=115 Identities=15% Similarity=0.276 Sum_probs=78.7
Q ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCch
Q 011091 205 IRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPD 284 (494)
Q Consensus 205 lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~d 284 (494)
+-++|.+..++.-..++.++..++|.++....-..++.+=|..-|...-| |-+..|+|+...--.||.+.-+ |
T Consensus 388 ~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLG---PYHdKFrsLntvsECLFSLING----D 460 (566)
T KOG3733|consen 388 FGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLG---PYHDKFRSLNTVSECLFSLING----D 460 (566)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEec---chHHhhhhHHHHHHHHHHhhCc----h
Confidence 34445555667788999999999999887666555554444433333333 2335688888877778877654 3
Q ss_pred hhHhhhh----cCcch----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 285 VWIPAYK----ASRWY----CLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 326 (494)
Q Consensus 285 vm~p~~~----~~~~~----~ifFi~~iii~~~illNLfiAVI~~~F~~~ 326 (494)
=|..++. .+.|. -+|.-+|+-+-.|++++||||+|.++|...
T Consensus 461 DMFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTI 510 (566)
T KOG3733|consen 461 DMFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTI 510 (566)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3434332 23222 388899999999999999999999999865
No 41
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.11 E-value=0.0062 Score=39.25 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=23.9
Q ss_pred HHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 382 EFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 382 ~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
|.+.+|+..|+++||+|+.+||..++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 457899999999999999999988764
No 42
>PTZ00184 calmodulin; Provisional
Probab=96.09 E-value=0.035 Score=49.06 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~ 409 (494)
+.+.++|..+|.+++|.++.+++...++.+. ...+.++...+|+.+|.+++|.|+.+||...+..
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 4577899999999999999999988887663 3455788999999999999999999999876553
No 43
>PTZ00183 centrin; Provisional
Probab=95.85 E-value=0.051 Score=48.72 Aligned_cols=65 Identities=22% Similarity=0.401 Sum_probs=55.1
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~ 409 (494)
..+.++|..+|.+++|.++.+++...++.+. ...+.++...+|...|.+++|.|+.+||...+..
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 4578899999999999999999998888762 2356778999999999999999999999876543
No 44
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.80 E-value=0.44 Score=53.58 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-----------cc----chhhccccccchhHHHHHHHHHHHHHHhhc-CC--cC---Cc
Q 011091 137 VYEGITLVILIIHTFFPITYE-----------GS----PIFWKSTYTRLKVLCLLILVADFLVYGLYL-SP--IA---FN 195 (494)
Q Consensus 137 i~E~i~l~iF~~E~~lk~~~~-----------g~----~~y~~~~wN~~d~ivvv~~~id~i~~~~~~-~~--~~---~~ 195 (494)
+++.+.=++|++++++++... .. .+|++ .|=++|++.++.. |.++..... +. .. ..
T Consensus 121 v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~l 197 (727)
T KOG0498|consen 121 VLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTIL 197 (727)
T ss_pred eHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHHH
Confidence 468888899999999987521 11 35888 8999998877665 443322110 00 00 01
Q ss_pred chhhhHhHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-------c-c--c----
Q 011091 196 FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE--DT-------V-Q--G---- 259 (494)
Q Consensus 196 ~~~lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~--~~-------~-~--g---- 259 (494)
...+-+.|+.|..|+++.+.++.+.......+.=.- .+.+++++++.-=+.|...+- .. . . +
T Consensus 198 ~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~--~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~ 275 (727)
T KOG0498|consen 198 VGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAG--AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR 275 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence 233445566666666655555665554444222211 223333444433344443331 10 0 0 0
Q ss_pred ---ccc----cCcH------HHHHHHHHhHhccCCCchhhHhhhhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 260 ---NMV----FTSF------GTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 326 (494)
Q Consensus 260 ---~~~----F~~~------~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~ 326 (494)
..+ |..+ ..++++-++.+|+-|++++- ..+..=.+|-|.++++|. ++.|.++.|-+..
T Consensus 276 ~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~----s~~~~E~iFsi~~mi~Gl-----lL~A~lIGNmt~~ 346 (727)
T KOG0498|consen 276 LLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVH----ANNMGEKIFSIFIMLFGL-----LLFAYLIGNMTAL 346 (727)
T ss_pred ccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccC----CCCcHHHHHHHHHHHHhH-----HHHHHHHhhHHHh
Confidence 112 4433 34677788888999998863 112222466666666664 3446667777665
Q ss_pred HHH
Q 011091 327 LAK 329 (494)
Q Consensus 327 ~~~ 329 (494)
.+.
T Consensus 347 iqs 349 (727)
T KOG0498|consen 347 LQS 349 (727)
T ss_pred HHH
Confidence 444
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.72 E-value=0.056 Score=46.89 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 337 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 337 ~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
..+..+..+|..+|.+++|.|+.++..... + ...+.....++...|.++||.|+.+||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-------DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 445678899999999999999999876543 2 1234567789999999999999999998766
No 46
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=95.68 E-value=0.035 Score=52.41 Aligned_cols=68 Identities=28% Similarity=0.490 Sum_probs=53.8
Q ss_pred HHHHHHHhhccCCCcccCHHHHHHHHHHhhcccC------CCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT------LPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 341 ~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~------~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
++.-+|++.|.+++|+|+++++...++.+-..-. .+...++....+|..+|.++||.++.+||...+.
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 3456799999999999999999888877743222 1233455678999999999999999999987764
No 47
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.60 E-value=0.035 Score=52.24 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=52.1
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHH----HHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE----FELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~----~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
.+++=||+++|.+++|+|+.+++...++.+-.-. -..+++. ...++.+.|.++||+|+.+||.++..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~--~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGEN--DDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 5788899999999999999999988887773211 0112343 35788899999999999999987654
No 48
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=95.55 E-value=0.079 Score=48.45 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=52.7
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHh
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~ 411 (494)
+.+.+||.++|++++|.|+++++...++.+. -..++.+...++...|. +.+.|+..||..++....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 5688999999999999999999988887763 24566778888888888 778888888877776543
No 49
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.31 E-value=0.088 Score=44.74 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
+......|+.++. ++|.++.++....+.+ .+++.+....+|...|.+++|+++.+||.-....+..
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~-------S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK-------SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH-------TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH-------cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 4567788998885 5799999987766554 4788899999999999999999999999766665543
No 50
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=94.90 E-value=0.083 Score=38.67 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHH
Q 011091 358 NKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (494)
Q Consensus 358 ~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i 410 (494)
+.++..++++.++ -+++++....+|++.|++++|.++.+||...+..+
T Consensus 3 sf~Evk~lLk~~N-----I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 3 SFKEVKKLLKMMN-----IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc-----cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3455667777773 57888999999999999999999999999888754
No 51
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.83 E-value=0.23 Score=41.09 Aligned_cols=59 Identities=22% Similarity=0.409 Sum_probs=43.9
Q ss_pred CcccCHHHHHHHH-HHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhh
Q 011091 354 VGFLNKEQCIKLF-EELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALR 413 (494)
Q Consensus 354 ~g~l~~~~~~~l~-~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~ 413 (494)
.+.+++.++..++ +++..+.+. ..+++....+++.+|.++||.||..||..+...+...
T Consensus 21 ~~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 21 KNYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred CCcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4578888887766 334333333 3367789999999999999999999999887655443
No 52
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=94.56 E-value=0.29 Score=40.10 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=49.6
Q ss_pred HHHHHHhhccC--CCcccCHHHHHHHHHH-hhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHh
Q 011091 342 LGKAFNLIDNY--NVGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (494)
Q Consensus 342 l~~af~~L~~~--~~g~l~~~~~~~l~~~-l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~ 411 (494)
+..-|...+.. ++|.|+.+++..+++. +.... ....++++...+++.+|.+++|.|+.+||..++..+.
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~-t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL-KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh-ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 34455555544 4789999999888864 32110 0123488999999999999999999999998876554
No 53
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=94.40 E-value=0.11 Score=46.79 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=51.5
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCC-----------CC----------------C-CHHHHHHHHHHhc
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL-----------PN----------------I-SREEFELIFDELD 391 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~-----------p~----------------~-~~~~~~~lf~~ld 391 (494)
+.+.+||+++|.+++|+|++++....+..|.+.... +. . .++.+...|...|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988777766432100 00 1 2333456788899
Q ss_pred ccCCCccCHHHHHHHHHH
Q 011091 392 DTHDFKINLDEFADLCNA 409 (494)
Q Consensus 392 ~~~~~~I~~~eF~~l~~~ 409 (494)
++++|+|+.+.+.+++.-
T Consensus 112 ~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTT 129 (171)
T ss_pred ccCCCccCHHHHHHHHHH
Confidence 999999999998877653
No 54
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.37 E-value=0.048 Score=58.17 Aligned_cols=136 Identities=11% Similarity=0.170 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc-ccchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHhHHHHHHHHhcccHh
Q 011091 138 YEGITLVILIIHTFFPITYE-GSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (494)
Q Consensus 138 ~E~i~l~iF~~E~~lk~~~~-g~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~R~lR~lrli~~~~~ 216 (494)
+++.|.++|.+-..+++++. ..-.||-....++|++.+-.+++++-.. +..--+|.||.+|+++. +.
T Consensus 167 idlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~-----------r~wlglrflralrlmtv-pd 234 (1103)
T KOG1420|consen 167 IDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLN-----------RSWLGLRFLRALRLMTV-PD 234 (1103)
T ss_pred hhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEec-----------cchHHHHHHHHHHhccH-HH
Confidence 35556666666666666654 3344677777788887776665442111 11112455566666643 33
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC-----cHHHHHHHHHhHhccCCCchhh
Q 011091 217 LRDTLFVLAGM-LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFT-----SFGTTLYQMFVLFTTSNNPDVW 286 (494)
Q Consensus 217 lr~l~~~l~~s-l~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~-----~~~~s~~tLf~l~Tt~~w~dvm 286 (494)
+-+.+..+..+ --.+..+.-++.-.++--|-+- ++-.+..+.-.+|. +++.+.+-+.+.++|.||+||+
T Consensus 235 ilqylnilktsssirl~qlvsifisvwltaag~i-hllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvy 309 (1103)
T KOG1420|consen 235 ILQYLNILKTSSSIRLVQLVSIFISVWLTAAGFI-HLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVY 309 (1103)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHhhccee-ehhhcCCChhHhccCcccchhhheeeeeEEEeeecccccee
Confidence 33333333211 1122222222222333222221 22222111113444 3566677778888999999986
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.17 E-value=0.055 Score=33.54 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.5
Q ss_pred HHHHHHhcccCCCccCHHHHHHH
Q 011091 384 ELIFDELDDTHDFKINLDEFADL 406 (494)
Q Consensus 384 ~~lf~~ld~~~~~~I~~~eF~~l 406 (494)
+..|+.+|.++||.|+.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45789999999999999999875
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=94.13 E-value=0.19 Score=38.92 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=51.3
Q ss_pred HHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCC-CccCHHHHHHHH
Q 011091 344 KAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADLC 407 (494)
Q Consensus 344 ~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~-~~I~~~eF~~l~ 407 (494)
.+|.+.|.++.|.+...+....++.+. .+..++.+.+.+.+++|+++. |.++.+.|..+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~----~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVT----GRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHc----CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 368889999999999999999998884 235677899999999999998 999999997654
No 57
>PLN02964 phosphatidylserine decarboxylase
Probab=93.86 E-value=0.24 Score=55.01 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=54.4
Q ss_pred HHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHH
Q 011091 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (494)
Q Consensus 342 l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~ 409 (494)
++++|+.+|.+++|.++.+++..++..+. ...++++...+|+.+|+|++|.|+.+|+.++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 56788889999999999999998888763 2457888999999999999999999999887654
No 58
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=93.28 E-value=0.1 Score=33.81 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.7
Q ss_pred HHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 382 EFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 382 ~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
+.+.+|+..|++++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 356789999999999999999988765
No 59
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=92.71 E-value=0.67 Score=43.63 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=49.7
Q ss_pred HHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 341 ~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
.+...|+.+|.+.+|+|+..+...+|.+|.. |+ +---.+.+..+.|.|.||+|+..||.-++
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga----pQ-THL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGA----PQ-THLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCC----ch-hhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 4667899999999999999999999999842 22 11224678889999999999999997555
No 60
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=92.60 E-value=0.81 Score=43.66 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=60.6
Q ss_pred HHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhhcccCCccccc
Q 011091 345 AFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFE 424 (494)
Q Consensus 345 af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~~~~~~~~~~~ 424 (494)
-..++|.+..|.+..+++..+-+.|+ +=+.+|+..|+|++|.|+..|+.+-+..+-..+.
T Consensus 99 mI~mfd~~~~G~i~f~EF~~Lw~~i~-----------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Ls--------- 158 (221)
T KOG0037|consen 99 MISMFDRDNSGTIGFKEFKALWKYIN-----------QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLS--------- 158 (221)
T ss_pred HHHHhcCCCCCccCHHHHHHHHHHHH-----------HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCC---------
Confidence 34456677777777777777777764 3346777788888888888887765554433321
Q ss_pred cCCCCcccHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 011091 425 NLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIV 464 (494)
Q Consensus 425 ~~P~~y~s~~~~~l~~~v~~~~F~~~i~~iillN~i~l~~ 464 (494)
|..++.-.++....--..-.|+-++.|++.+-...=+.
T Consensus 159 --pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 159 --PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred --HHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 22222223333322233467889999998888766543
No 61
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=92.37 E-value=0.98 Score=35.89 Aligned_cols=75 Identities=32% Similarity=0.446 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCchhhHhhhhcCcchhhhhhhHHHHHHHHHHHHHHHH
Q 011091 239 LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAV 318 (494)
Q Consensus 239 ~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~~~ifFi~~iii~~~illNLfiAV 318 (494)
+++++.++.+.+.+ + ++ ..-.++.+|++.-+..+||.|++|+. |. +++..++-+.+.++| ..++.++++.
T Consensus 3 ~~~~l~~~~~~~~~-~---~~-~~~~~~~da~yfs~~t~tTvGyGDi~-p~---t~~gr~~~~~~~~~G-~~~~~~~~~~ 72 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-S---EG-SEKWSFIDALYFSFVTITTVGYGDIV-PQ---TPAGRIFTIIYMLIG-IFLFALFLSV 72 (79)
T ss_dssp HHHHHHHHHHHHHH-T---TS-SSTTSHHHHHHHHHHHHTT---SSSS-TS---SHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred EEeeeHHHHHHHHH-H---Hh-cccCCHHHHHHHHHHHHhcccCCCcc-CC---ccchHHHHHHHHHHH-HHHHHHHHHH
Confidence 44455555555555 1 11 34678899999999999999999986 44 344344555555544 4566777776
Q ss_pred HHHHH
Q 011091 319 VYDSF 323 (494)
Q Consensus 319 I~~~F 323 (494)
+.+-+
T Consensus 73 ~~~~l 77 (79)
T PF07885_consen 73 LASVL 77 (79)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66544
No 62
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=92.33 E-value=1.2 Score=46.65 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 334 MDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 334 ~~~~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
...+-|..+..-|+.+|.+..|.++.+++...-+-+.++- +..++++++..+=+.+|-++||+||..||.+-.-..+.
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 3444467799999999999999999999877666665543 35688999999999999999999999999876655443
No 63
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=92.17 E-value=0.8 Score=47.86 Aligned_cols=78 Identities=26% Similarity=0.367 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccC-----CCC-----------------------C--------
Q 011091 335 DRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT-----LPN-----------------------I-------- 378 (494)
Q Consensus 335 ~~~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~-----~p~-----------------------~-------- 378 (494)
...++..+..+|...|.++.|.++..+|...++.+-...- .|+ +
T Consensus 459 l~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~sl 538 (631)
T KOG0377|consen 459 LRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSL 538 (631)
T ss_pred HHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHH
Confidence 3444667999999999999999999999887776633100 000 0
Q ss_pred ------CHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 379 ------SREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 379 ------~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
.+...+.+|+.+|+|++|.|+.+||.+.++.+..
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 1123467899999999999999999998887654
No 64
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.15 E-value=0.67 Score=48.73 Aligned_cols=52 Identities=29% Similarity=0.404 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
+..++.+|..+|.+++|.++.+++.. ...+|+.+|.|+||.|+.+||...+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 34578999999999999999988631 35689999999999999999988765
No 65
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=92.12 E-value=0.7 Score=47.98 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccC
Q 011091 320 YDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKIN 399 (494)
Q Consensus 320 ~~~F~~~~~~~~~~~~~~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~ 399 (494)
|+.|+.+... ++..+.+-|..+|.+.+|.++.++.+.-++++. -++++++.+.+++..|+++++.|+
T Consensus 70 y~eF~~Y~~~--------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-----i~l~de~~~k~~e~~d~~g~~~I~ 136 (463)
T KOG0036|consen 70 YSEFKRYLDN--------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-----IQLSDEKAAKFFEHMDKDGKATID 136 (463)
T ss_pred HHHHHHHHHH--------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhC-----CccCHHHHHHHHHHhccCCCeeec
Confidence 4566666433 334567889999999999999999888888873 478999999999999999999999
Q ss_pred HHHHHHH
Q 011091 400 LDEFADL 406 (494)
Q Consensus 400 ~~eF~~l 406 (494)
.+|+.+.
T Consensus 137 ~~e~rd~ 143 (463)
T KOG0036|consen 137 LEEWRDH 143 (463)
T ss_pred cHHHHhh
Confidence 9998653
No 66
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=91.58 E-value=0.79 Score=47.63 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 335 DRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 335 ~~~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
...|....+.-|+.+|.++.|.++..+..+-+..+. .|+...+-.+.+++..|.+.||.+|..||..-.
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CCCCchHHHHHHHHhcccCcCCcccHHHHHHHH
Confidence 344555677889999999999999999888887774 366777788899999999999999999996544
No 67
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=91.34 E-value=0.98 Score=40.82 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
+..+..||.++|+++.|.|..+.+..++.... -+.+++++..+|+..-.+..|.++..+|..+.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-----Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-----DRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-----ccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 34578999999999999999999888877753 47899999999999999999999999887654
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=90.22 E-value=0.37 Score=30.93 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.5
Q ss_pred HHHHHHhhccCCCcccCHHHHHHHHHHh
Q 011091 342 LGKAFNLIDNYNVGFLNKEQCIKLFEEL 369 (494)
Q Consensus 342 l~~af~~L~~~~~g~l~~~~~~~l~~~l 369 (494)
++++|+.+|.+++|.|+.+++...+++|
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 4689999999999999999998887764
No 69
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=90.15 E-value=1.7 Score=39.56 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHH
Q 011091 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (494)
Q Consensus 338 rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~ 409 (494)
.++.+..||...++++.|.++.+.++.-++.+. -...++++..+....|+++.|+|+.++|......
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-----FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALG-----FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcC-----CCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 356788999999999999999999877777763 2445678888888999999999999999877543
No 70
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=89.95 E-value=0.79 Score=40.98 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHH----HHHHHhcccCCCccCHHHHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFE----LIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~----~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
..+..-||...|-++++++..++..+.+..+. +..+++++.+ .+..+.|-||||+++..||..+.
T Consensus 107 dlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT----r~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 107 DLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT----RDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HhhhhheeEEeecCCCCcccHHHHHHHHHHHh----hccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 34456799999999999999999888888874 4678888875 45667899999999999998764
No 71
>PLN02964 phosphatidylserine decarboxylase
Probab=89.05 E-value=1.6 Score=48.73 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHH---HHHHHHHhcccCCCccCHHHHHHHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE---FELIFDELDDTHDFKINLDEFADLCNAI 410 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~---~~~lf~~ld~~~~~~I~~~eF~~l~~~i 410 (494)
.+.+.++|..+|++++|.+ ....++.+.. ...++++ .+.+|+..|.+++|.|+.+||.+++..+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3567899999999999976 3444555531 1233444 6899999999999999999999888754
No 72
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=88.79 E-value=1.2 Score=42.09 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhhc
Q 011091 343 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 415 (494)
Q Consensus 343 ~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~~ 415 (494)
...|+..|.+++|.++.+++...+..+. ....++...=.|+..|.+++|.|+++|+.++..++.....
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 4578888999999999998877666663 2333444555689999999999999999998887655444
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=85.72 E-value=1.1 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.7
Q ss_pred HHHHHHhhccCCCcccCHHHHHHHHH
Q 011091 342 LGKAFNLIDNYNVGFLNKEQCIKLFE 367 (494)
Q Consensus 342 l~~af~~L~~~~~g~l~~~~~~~l~~ 367 (494)
++++|+.+|.+++|.|+.+++...++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999999999999999988876
No 74
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=85.45 E-value=3 Score=44.65 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
+.+.++|..+| ++.|+++..+....+++.+... ....+++++.+..+.+.+.+|+++.+||..++-
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 45778999999 8999999999999998886433 234678899999999999999999999988664
No 75
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=85.31 E-value=3.6 Score=38.77 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=43.9
Q ss_pred HHhhccCCCcc-cCHHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHhcccCCCccCHHHHHHHHHHH
Q 011091 346 FNLIDNYNVGF-LNKEQCIKLFEELNKYRTLPNISRE-EFELIFDELDDTHDFKINLDEFADLCNAI 410 (494)
Q Consensus 346 f~~L~~~~~g~-l~~~~~~~l~~~l~~~~~~p~~~~~-~~~~lf~~ld~~~~~~I~~~eF~~l~~~i 410 (494)
+...+..++|. ++.++|.+.+.... |+.+.+ ..+-.|+.+|.+++|.|+.+|+..++..+
T Consensus 72 ~~~f~~~~~~~~v~F~~Fv~~ls~f~-----~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 72 IDRFDTDGNGDPVDFEEFVRLLSVFS-----PKASKREKLRFAFRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred HHHHhccCCCCccCHHHHHHHHhhhc-----CCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 33444555555 88888887776653 444444 78889999999999999999998777543
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=1.4 Score=49.03 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHh
Q 011091 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (494)
Q Consensus 338 rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~ 411 (494)
.|.+.+.-|+.+|....|+++-.|-...+- ..++.......+|...|-|+||+++.|||.--...++
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~-------qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALG-------QSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHH-------hcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 456678899999999999998877543321 2467778899999999999999999999964333333
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=83.03 E-value=1.4 Score=27.11 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.6
Q ss_pred HHHHHHhhccCCCcccCHHHHHHH
Q 011091 342 LGKAFNLIDNYNVGFLNKEQCIKL 365 (494)
Q Consensus 342 l~~af~~L~~~~~g~l~~~~~~~l 365 (494)
++++|..+|.+++|.++.+++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 457899999999999999988764
No 78
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=79.72 E-value=8.5 Score=36.90 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=56.4
Q ss_pred HHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhh
Q 011091 343 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 414 (494)
Q Consensus 343 ~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~ 414 (494)
++.|...|.++.|.|+..++..-+..+. -+++..-.+.+.++.|+.++|.|..|+|...|-.++.-.
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~G-----y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt 193 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLG-----YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLT 193 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcC-----cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHH
Confidence 4678888999999999999888777763 357878889999999999999999999999997766533
No 79
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=79.45 E-value=2 Score=32.51 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.1
Q ss_pred HHHHHHHhcccCCCccCHHHHHHHHHHHh
Q 011091 383 FELIFDELDDTHDFKINLDEFADLCNAIA 411 (494)
Q Consensus 383 ~~~lf~~ld~~~~~~I~~~eF~~l~~~i~ 411 (494)
.+.+|+.+|.+++|.|+.+|+..++..+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998887544
No 80
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=78.91 E-value=2.6 Score=24.96 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=21.6
Q ss_pred HHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 383 FELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 383 ~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
...+|+..|.+++|.|+.+||..+..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45678899999999999999987654
No 81
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.79 E-value=6.4 Score=41.91 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhhc
Q 011091 337 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 415 (494)
Q Consensus 337 ~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~~ 415 (494)
..|+.....|..+..+.+|+|+-..-..++ +|.++.-.|...+|...|-+.||.++.+||..-++.+-.+..
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFF-------tKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkN 299 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFF-------TKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKN 299 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhh-------hhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeeccc
Confidence 346778888999999999999877654444 345788899999999999999999999999888876554433
No 82
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.79 E-value=71 Score=34.42 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cc---------cchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhHh
Q 011091 136 LVYEGITLVILIIHTFFPITY----EG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA 202 (494)
Q Consensus 136 ~i~E~i~l~iF~~E~~lk~~~----~g---------~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~~ 202 (494)
+.+++.+=.+|+++++++... .| ++.|+.+.--.+|++.++.. |++... .......|..
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~~~------~~~~~~~r~n 103 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLLFK------DGSASLERLN 103 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHhhc------CCcchHHHHH
Confidence 457999999999999986542 23 24577777667777666655 443221 1234566777
Q ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011091 203 PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE 254 (494)
Q Consensus 203 R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~ 254 (494)
|++|..|+...+.+... .-+.|.+..+..+....+++|=+-|...|-
T Consensus 104 Rllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf~ 150 (536)
T KOG0500|consen 104 RLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYFL 150 (536)
T ss_pred HHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 77777777654433222 335677777777777777777777776663
No 83
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.39 E-value=1.6e+02 Score=32.62 Aligned_cols=138 Identities=18% Similarity=0.188 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHhh-c-c---------cchhhccccccchhHHHHHHHHHHHHHHhhcCCcCCcchhhhH
Q 011091 136 LVYEGITLVILIIHTFF---PITY-E-G---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 201 (494)
Q Consensus 136 ~i~E~i~l~iF~~E~~l---k~~~-~-g---------~~~y~~~~wN~~d~ivvv~~~id~i~~~~~~~~~~~~~~~lR~ 201 (494)
++++++|=+|+++++++ ++.. . | .+.|.++..-.+|++.++.. |++-.... ....+|+
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPl--dllY~~~G------~~p~wR~ 335 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPL--DLLYLFFG------FNPMWRA 335 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhH--HHHHHHhc------cchhhhh
Confidence 46899999999999987 2221 1 2 24588888878887766654 44332221 1122344
Q ss_pred hHHHHHHHHhcccHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccccccccCcHHHHH-----HHH
Q 011091 202 APYIRVVFFILNIRQLRDTLFV--LAGMLGTYLNVLALGLLFLLF-SSWLAYVIFEDTVQGNMVFTSFGTTL-----YQM 273 (494)
Q Consensus 202 ~R~lR~lrli~~~~~lr~l~~~--l~~sl~~i~~v~~ll~l~~~i-fAilg~~lF~~~~~g~~~F~~~~~s~-----~tL 273 (494)
=|+|+.--+.-.++.|..++.. +.+.+++..+++..+=+--++ |..-++|-+|.+. .-|+.-+++. ++.
T Consensus 336 ~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~r---WVydg~Gn~YiRCyyfa~ 412 (815)
T KOG0499|consen 336 NRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTR---WVYDGEGNEYIRCYYFAV 412 (815)
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccce---eEEcCCCCceeeehhhHH
Confidence 4444433333334455554433 335566666655555443333 4444667676532 2233333332 223
Q ss_pred HhHhccCCCch
Q 011091 274 FVLFTTSNNPD 284 (494)
Q Consensus 274 f~l~Tt~~w~d 284 (494)
=.++|..|.|+
T Consensus 413 kt~~tiG~~P~ 423 (815)
T KOG0499|consen 413 KTLITIGGLPE 423 (815)
T ss_pred HHHHHhcCCCC
Confidence 34455566665
No 84
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=71.72 E-value=21 Score=31.97 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=48.0
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 405 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~ 405 (494)
+.+.+.....|.+++|++...+....+..+. .++++++.+.+..-. .|.+|.|+.++|.+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~-eD~nG~i~YE~fVk 147 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQ-EDSNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHH-----hhccHHHHHHHHccc-cccCCcCcHHHHHH
Confidence 3467788889999999999999999999985 578889888776433 34578999999864
No 85
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=71.66 E-value=0.97 Score=44.08 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=20.3
Q ss_pred HHHHHHHhcccccchhHHHHHHH
Q 011091 433 PFSEKLKAFIRSTKFGYMISIIL 455 (494)
Q Consensus 433 ~~~~~l~~~v~~~~F~~~i~~ii 455 (494)
.+|+.++++|+|+||+.+|.++|
T Consensus 217 ~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 217 NLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHhhheeeecccchhheeeeeC
Confidence 36889999999999999998775
No 86
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.16 E-value=10 Score=38.48 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHH
Q 011091 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 404 (494)
Q Consensus 338 rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~ 404 (494)
+.-.+.+...-+|.++.|+|+.+++..-|-.-..-...|..-..+.+.++...|+++||+++.+|-.
T Consensus 198 ~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~ 264 (325)
T KOG4223|consen 198 KDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELL 264 (325)
T ss_pred HHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHh
Confidence 3344566777788889999998887765544322223356666678899999999999999999864
No 87
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=69.74 E-value=34 Score=34.88 Aligned_cols=86 Identities=19% Similarity=0.294 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCchhhH----hhhhcCcchhhhhhhH
Q 011091 228 LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI----PAYKASRWYCLFFVLY 303 (494)
Q Consensus 228 l~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~dvm~----p~~~~~~~~~ifFi~~ 303 (494)
-++..+++++.+..-.+-...|-.+|..-+.+ ++|| |++--|+.+||-|++|..- .++...+.|..+=..|
T Consensus 154 ~~S~~~l~~i~~~~~~~~i~~gaa~fs~~E~W-syfd----s~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~f 228 (350)
T KOG4404|consen 154 DVSVYNLVLILFTACILLICCGAAMFSSVEGW-SYFD----SYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVF 228 (350)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHhhcccCc-chhh----hhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHH
Confidence 34555666655555444455677777765543 4565 4566778889999999762 2444555565444445
Q ss_pred HHHH---HHHHHHHHHHH
Q 011091 304 VLIG---VYFVTNLILAV 318 (494)
Q Consensus 304 iii~---~~illNLfiAV 318 (494)
|++| .+-++|+.+=.
T Consensus 229 IL~Gl~vi~a~~NllvLr 246 (350)
T KOG4404|consen 229 ILLGLCVIYALLNLLVLR 246 (350)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 5444 44556655433
No 88
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.33 E-value=6.1 Score=40.00 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=46.2
Q ss_pred HHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHH-HHHH
Q 011091 344 KAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA-DLCN 408 (494)
Q Consensus 344 ~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~-~l~~ 408 (494)
+-|+.-|.+++|.++.+++...++.=. .|.+..--++.....+|+++||+|+.+||. ++++
T Consensus 167 ~rFk~AD~d~dg~lt~EEF~aFLHPEe----~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 167 ERFKAADQDGDGSLTLEEFTAFLHPEE----HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHhhcccCCCCcccHHHHHhccChhh----cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 346677889999999999877664432 355555556677788999999999999996 5654
No 89
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=68.23 E-value=3.3 Score=43.49 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=45.1
Q ss_pred ccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhh
Q 011091 350 DNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (494)
Q Consensus 350 ~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~ 412 (494)
+-+..|-|+..+..-++.-|. +++..++..|+..|.|+||.|+.+||..++..+..
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS-------~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~s 264 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLS-------IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRS 264 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHc-------cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHh
Confidence 334678899999887777763 34467888999999999999999999998876654
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=67.00 E-value=8.6 Score=22.48 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=21.6
Q ss_pred HHHHHHhhccCCCcccCHHHHHHHHHH
Q 011091 342 LGKAFNLIDNYNVGFLNKEQCIKLFEE 368 (494)
Q Consensus 342 l~~af~~L~~~~~g~l~~~~~~~l~~~ 368 (494)
++++|..++.+++|.++.+++...++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 356788889999999999988776654
No 91
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=66.04 E-value=42 Score=34.66 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=44.2
Q ss_pred cccCcHHHHHHHHHhHhccCCCchhhHhhhhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 261 MVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 326 (494)
Q Consensus 261 ~~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~ 326 (494)
.+.++|..+++--.+..||-||+... ....-.++.+.+..-.+...++..+.+|+++..|+.-
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~~---~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSRY---PTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSSE---B-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ecccchhhheeEEEEEEEEeccCCcc---cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45789999999999999999998742 1223345667777788888888889999999888753
No 92
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=64.51 E-value=27 Score=31.29 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=49.2
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhccc--CCCccCHHHHHHHHHHHhhh
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDT--HDFKINLDEFADLCNAIALR 413 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~--~~~~I~~~eF~~l~~~i~~~ 413 (494)
..++++|.+.|..++|.++..|.-..++.+. .+.++.+........+++ .-..++.++|.-++..+...
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALG-----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhc-----CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 4578999999999999999999988888884 233455555555555554 23567888887777655543
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=61.93 E-value=4 Score=35.13 Aligned_cols=61 Identities=25% Similarity=0.266 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHH
Q 011091 337 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 404 (494)
Q Consensus 337 ~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~ 404 (494)
.....+.=-|..||.+++|.++..++..+.+.|. + .+.=....++.=|.++|+.|+.+|+.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~----~---~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM----P---PEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS----T---TGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh----h---hHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 3445666778999999999999877543333221 1 12225667888899999999999874
No 94
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=56.54 E-value=29 Score=41.55 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=73.7
Q ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----c---ccccccCcHHH-HHHHHHhHhc-cCCCc
Q 011091 213 NIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT----V---QGNMVFTSFGT-TLYQMFVLFT-TSNNP 283 (494)
Q Consensus 213 ~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~----~---~g~~~F~~~~~-s~~tLf~l~T-t~~w~ 283 (494)
.++.+|.+++++-..-+.+.-...++.++.++|.+.++.+|..- . +.+..=++... -++.+++=.- +.|-+
T Consensus 4801 gfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgvragggig 4880 (5019)
T KOG2243|consen 4801 GFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGVRAGGGIG 4880 (5019)
T ss_pred hHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeeeecCCccc
Confidence 45566666665555555555556788889999999999999741 1 11123344333 2334443322 34444
Q ss_pred h-hhHhhhhcCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 284 D-VWIPAYKASRWY-CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 331 (494)
Q Consensus 284 d-vm~p~~~~~~~~-~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~~ 331 (494)
| +-.|+=+....| .+|=|.|.++...+++.+.-+.|++.|-+.+.++.
T Consensus 4881 deiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdqqe 4930 (5019)
T KOG2243|consen 4881 DEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQE 4930 (5019)
T ss_pred ccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHH
Confidence 4 334544433444 46777777777788999999999999988765543
No 95
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=55.40 E-value=2.4e+02 Score=30.30 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCchhhHhhhhcCcchhhhh
Q 011091 221 LFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFF 300 (494)
Q Consensus 221 ~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~~~ifF 300 (494)
++++....|... ++.+.+.+|++-||+..+--....+.+ .=.++.+++|..-...-+.||+|+. |-..-++..++
T Consensus 245 ~Kt~M~~~Pg~v-L~vftl~~Wii~sW~~~~cER~~~~~~-~~~~~~nsmWli~iTFlsiGYGDiV-P~TycGr~v~l-- 319 (489)
T KOG3684|consen 245 LKTLMTICPGTV-LLVFTLSLWIIASWMLRQCERYHDSQD-VTINYLNSMWLIAITFLSIGYGDIV-PNTYCGRGVAL-- 319 (489)
T ss_pred HHHHHHhCchHH-HHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHhhHHHHHHHHhhcccCccc-CCccccchHHH--
Confidence 344444444332 344455667788888877765433222 4567788888887777789999987 54434443332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 011091 301 VLYVLIGVYFVTNLILAVVYDSFK 324 (494)
Q Consensus 301 i~~iii~~~illNLfiAVI~~~F~ 324 (494)
..-+..=....+++|||-.+-.
T Consensus 320 --~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 320 --LTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred --HhhhhhhhHHHHHHHHHHHHHH
Confidence 2223334667899999986654
No 96
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=55.12 E-value=12 Score=36.41 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHH-HHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLF-EELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 404 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~-~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~ 404 (494)
|+++..-|...|...+++++..++++.. ++....- +-+.++-+.-|+..|.++||.|+.+||.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHf---qeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHF---QEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHH---HHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 5678889999999999999888766533 2221110 1122344567888999999999999985
No 97
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=53.23 E-value=18 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.4
Q ss_pred HHHHHHHhcccCCCccCHHHHHHHHHHH
Q 011091 383 FELIFDELDDTHDFKINLDEFADLCNAI 410 (494)
Q Consensus 383 ~~~lf~~ld~~~~~~I~~~eF~~l~~~i 410 (494)
...+|...|.+++|.|+.+||..++...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 3567889999999999999998887654
No 98
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=52.94 E-value=3.1e+02 Score=30.47 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=22.6
Q ss_pred HHHHHHHHhHhccCCCchhhHhhhhcCcchhhhhhhHHHHHHHH
Q 011091 267 GTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYF 310 (494)
Q Consensus 267 ~~s~~tLf~l~Tt~~w~dvm~p~~~~~~~~~ifFi~~iii~~~i 310 (494)
.+|++--..++|+.|++.|. |..+.. -+|-++.++||+.+
T Consensus 425 issLYfTMt~mttvGFGNiA-~~TD~E---KiF~v~mMii~aLL 464 (971)
T KOG0501|consen 425 ISSLYFTMTCMTTVGFGNIA-PNTDNE---KIFGVCMMIIGALL 464 (971)
T ss_pred hhhhhhhhhhhhcccccccC-CCccHH---HHHHHHHHHHHHHH
Confidence 34444444667788888875 322222 35666666666543
No 99
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=51.84 E-value=12 Score=39.41 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCCCcccCHHHHHHHHHHhhcc-----cCCCCC----C-HHHH--HHHHHHhcccCCCccCHHHHHHH
Q 011091 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKY-----RTLPNI----S-REEF--ELIFDELDDTHDFKINLDEFADL 406 (494)
Q Consensus 339 r~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~-----~~~p~~----~-~~~~--~~lf~~ld~~~~~~I~~~eF~~l 406 (494)
++.++-||.++|.+|+|.++++++....+-+.+- +.+-.. + ..++ .+.-.-.-++++++++.+||.+.
T Consensus 232 ~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHH
Confidence 3456789999999999999999987766555320 000000 0 0011 12333456788888888888877
Q ss_pred HHHH
Q 011091 407 CNAI 410 (494)
Q Consensus 407 ~~~i 410 (494)
.+.+
T Consensus 312 ~e~L 315 (489)
T KOG2643|consen 312 QENL 315 (489)
T ss_pred HHHH
Confidence 7543
No 100
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=50.82 E-value=17 Score=26.94 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHhcccCCCccCHHHHHHHHHH
Q 011091 384 ELIFDELDDTHDFKINLDEFADLCNA 409 (494)
Q Consensus 384 ~~lf~~ld~~~~~~I~~~eF~~l~~~ 409 (494)
+..|..+|++++|.|+.+|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35788999999999999999877654
No 101
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=50.65 E-value=59 Score=29.50 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=43.5
Q ss_pred cCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhh
Q 011091 351 NYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALR 413 (494)
Q Consensus 351 ~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~ 413 (494)
..+...++-.+|.++++.-.=+. .+++..+...+|......+...|+.++|.+.+..+..+
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d--~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIID--KKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCC--CCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 33455688889999998875343 34899999999999877777789999998777655443
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=48.26 E-value=47 Score=26.33 Aligned_cols=61 Identities=11% Similarity=0.329 Sum_probs=45.5
Q ss_pred HHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhccc----CCCccCHHHHHHHH
Q 011091 343 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDT----HDFKINLDEFADLC 407 (494)
Q Consensus 343 ~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~----~~~~I~~~eF~~l~ 407 (494)
...|..+.. +.+.++.+++.+.+++-. +.+..+.++...++....++ ..+.++.++|....
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ---~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQ---GEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTS---S-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHh---ccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 355666655 688899999999887763 33567889999999887654 46889999997654
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.45 E-value=80 Score=35.90 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=50.5
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHHHHhhhhcc
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQK 416 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~~i~~~~~~ 416 (494)
.+-.+-|..|++ +.|+++-+|-...+-. ..+..--...+|...|-|.||++|..||..-|..+.+++..
T Consensus 16 ~K~~~qF~~Lkp-~~gfitg~qArnfflq-------S~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 16 QKHDAQFGQLKP-GQGFITGDQARNFFLQ-------SGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred HHHHHHHhccCC-CCCccchHhhhhhHHh-------cCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcC
Confidence 334456666665 5789988886554422 24455567889999999999999999998888877777654
No 104
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=45.45 E-value=27 Score=27.99 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcc--cCCCccCHHHHHHHHHH
Q 011091 381 EEFELIFDELDD--THDFKINLDEFADLCNA 409 (494)
Q Consensus 381 ~~~~~lf~~ld~--~~~~~I~~~eF~~l~~~ 409 (494)
++....|..+|+ +++|.|+.+|+..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 456778999999 89999999999888753
No 105
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=44.89 E-value=28 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcccCCCccCHHHHHHHHHH
Q 011091 381 EEFELIFDELDDTHDFKINLDEFADLCNA 409 (494)
Q Consensus 381 ~~~~~lf~~ld~~~~~~I~~~eF~~l~~~ 409 (494)
++....|+.+|++++|.|+.+|+..+...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34677899999999999999999877643
No 106
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=43.93 E-value=86 Score=28.14 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=13.3
Q ss_pred hhhhHhHHHHHHHHhcccHhH
Q 011091 197 LPLRIAPYIRVVFFILNIRQL 217 (494)
Q Consensus 197 ~~lR~~R~lR~lrli~~~~~l 217 (494)
+.+|++|++|.++..+..+.+
T Consensus 66 ~~l~~~R~l~~~~~~~~~~~~ 86 (200)
T PF00520_consen 66 RLLRLLRLLRLLRRFRSLRRL 86 (200)
T ss_dssp HHHHHHHHHHHHHTTTSHHHH
T ss_pred Eeecccccccccccccccccc
Confidence 456666777777777655444
No 107
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.86 E-value=94 Score=26.95 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=39.4
Q ss_pred HHHHhhccCCCcccCHHHHHHHHHHhhc-----ccCCCCCCHHHHHHHHH----HhcccCCCccCHHHHHH
Q 011091 344 KAFNLIDNYNVGFLNKEQCIKLFEELNK-----YRTLPNISREEFELIFD----ELDDTHDFKINLDEFAD 405 (494)
Q Consensus 344 ~af~~L~~~~~g~l~~~~~~~l~~~l~~-----~~~~p~~~~~~~~~lf~----~ld~~~~~~I~~~eF~~ 405 (494)
.-|+.-|-+++++++--+..+-....++ ....|-.++.+.+.+.+ ..|.++||.|+..||.+
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 4566777778888876655443333322 22335567777665554 44667899999999964
No 108
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=39.84 E-value=41 Score=29.10 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 379 SREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 379 ~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
...+..-.|..+|.++||.|+.+|...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 34567789999999999999999998664
No 109
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=38.10 E-value=41 Score=27.28 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.5
Q ss_pred HHHHHHHHHhc-ccCCC-ccCHHHHHHHHHH
Q 011091 381 EEFELIFDELD-DTHDF-KINLDEFADLCNA 409 (494)
Q Consensus 381 ~~~~~lf~~ld-~~~~~-~I~~~eF~~l~~~ 409 (494)
++....|+.+| ++++| +|+.+|+..++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 45678999997 99999 5999999988853
No 110
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=37.96 E-value=1.5e+02 Score=32.05 Aligned_cols=20 Identities=10% Similarity=0.361 Sum_probs=10.7
Q ss_pred ccCCCcccCHHHHHHHHHHh
Q 011091 350 DNYNVGFLNKEQCIKLFEEL 369 (494)
Q Consensus 350 ~~~~~g~l~~~~~~~l~~~l 369 (494)
+.+++.+.+.+++.+..-.|
T Consensus 46 e~~ge~~mt~edFv~~ylgL 65 (694)
T KOG0751|consen 46 EKNGESYMTPEDFVRRYLGL 65 (694)
T ss_pred hhccccccCHHHHHHHHHhh
Confidence 33455566666665544443
No 111
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=36.38 E-value=49 Score=33.74 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=47.9
Q ss_pred HHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHhcccCCCccCHHHHHHHHH
Q 011091 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (494)
Q Consensus 341 ~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~~~~~~~~lf~~ld~~~~~~I~~~eF~~l~~ 408 (494)
.++-||+..+.+.+|.++.+.+..+++.... +..-....+|..+++..+++|+..+|.+++.
T Consensus 297 iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg------v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 297 IIQYAFKRFSVAEDGISGEHILSLILQVVLG------VEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhcC------cceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 3556888899999999888877777776632 2223456789999999999999999987764
No 112
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=35.45 E-value=99 Score=33.31 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=45.7
Q ss_pred HHHHHHhccccc-------chhHHHHHHHHHHHHHHHHhhccc-------------------------hhhhhHHHHHHH
Q 011091 434 FSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTVW-------------------------LEFIDSNFLCLF 481 (494)
Q Consensus 434 ~~~~l~~~v~~~-------~F~~~i~~iillN~i~l~~e~~~~-------------------------~~~~~~~F~~iF 481 (494)
+++++.++++.| .|..+..+.|++.++.+|+.+..+ ..++|++..+.|
T Consensus 174 ~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WF 253 (477)
T KOG3713|consen 174 LRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWF 253 (477)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHH
Confidence 566677766654 488888899999999999986421 238899999999
Q ss_pred HHHHHHHHhh
Q 011091 482 LINICDICLN 491 (494)
Q Consensus 482 ~~Ei~~~~~~ 491 (494)
|+|.++..+.
T Consensus 254 T~E~llR~~~ 263 (477)
T KOG3713|consen 254 TFEYLLRFLV 263 (477)
T ss_pred HHHHHHHHHc
Confidence 9999988764
No 113
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=35.03 E-value=50 Score=26.90 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHhc-ccCCC-ccCHHHHHHHHHH
Q 011091 382 EFELIFDELD-DTHDF-KINLDEFADLCNA 409 (494)
Q Consensus 382 ~~~~lf~~ld-~~~~~-~I~~~eF~~l~~~ 409 (494)
+....|+.+| ++++| .|+.+|+..+...
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4567899998 79999 5999999888764
No 114
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=32.12 E-value=57 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcc-cC-CCccCHHHHHHHHHH
Q 011091 381 EEFELIFDELDD-TH-DFKINLDEFADLCNA 409 (494)
Q Consensus 381 ~~~~~lf~~ld~-~~-~~~I~~~eF~~l~~~ 409 (494)
.+....|..+|+ ++ +|.|+.+|+..++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 456778999997 87 699999999887654
No 115
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=31.98 E-value=62 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHHHHHHHhcc-cCCCccCHHHHHHHHHH
Q 011091 382 EFELIFDELDD-THDFKINLDEFADLCNA 409 (494)
Q Consensus 382 ~~~~lf~~ld~-~~~~~I~~~eF~~l~~~ 409 (494)
.....|+..|+ +++|.|+.+|+..+...
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 35678999999 99999999999887764
No 116
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=31.68 E-value=2.7e+02 Score=34.58 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=52.6
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHhhcccCCCCC----CHHHHHHHHHHhcccCCCccCHHHHHHHH
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNI----SREEFELIFDELDDTHDFKINLDEFADLC 407 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l~~~~~~p~~----~~~~~~~lf~~ld~~~~~~I~~~eF~~l~ 407 (494)
+.+.-+|.-+|.+.+|+++.+++...++.+. |. .|.. .+.+++.+.+.+|++.+|+|+..++....
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslg-Y~-lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLG-YD-LPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcC-CC-CcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 4467789999999999999999999998885 21 1222 23478999999999999999999986543
No 117
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=31.37 E-value=7.8e+02 Score=28.02 Aligned_cols=51 Identities=10% Similarity=-0.039 Sum_probs=22.3
Q ss_pred hhHhHHHHHHHHhcccHhHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHH
Q 011091 199 LRIAPYIRVVFFILNIRQLRDTLFVLAG-MLGTYLNVLALGLL--FLLFSSWLA 249 (494)
Q Consensus 199 lR~~R~lR~lrli~~~~~lr~l~~~l~~-sl~~i~~v~~ll~l--~~~ifAilg 249 (494)
+.++|++..++..+....+...+..+.. -+-.++-+++++++ ...++.+++
T Consensus 478 l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 478 LSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444433333 44444444444433 334455554
No 118
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=31.34 E-value=59 Score=26.61 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.4
Q ss_pred HHHHHHHHhc-ccCCC-ccCHHHHHHHHHH
Q 011091 382 EFELIFDELD-DTHDF-KINLDEFADLCNA 409 (494)
Q Consensus 382 ~~~~lf~~ld-~~~~~-~I~~~eF~~l~~~ 409 (494)
.+...|+..| ++++| .|+.+|+..+...
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 4556799998 68998 5999999887754
No 119
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=31.04 E-value=3.9e+02 Score=25.93 Aligned_cols=17 Identities=35% Similarity=1.140 Sum_probs=12.2
Q ss_pred chhhhhhhHHH-HHHHHH
Q 011091 295 WYCLFFVLYVL-IGVYFV 311 (494)
Q Consensus 295 ~~~ifFi~~ii-i~~~il 311 (494)
|+..|-+.|++ ||.|+-
T Consensus 202 wyi~Y~vPY~~~ig~~i~ 219 (230)
T PF03904_consen 202 WYIAYLVPYIFAIGLFIY 219 (230)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 66778888887 676654
No 120
>PLN03223 Polycystin cation channel protein; Provisional
Probab=30.47 E-value=2.2e+02 Score=34.84 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=29.5
Q ss_pred hhhHhHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 198 PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLF 244 (494)
Q Consensus 198 ~lR~~R~lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~i 244 (494)
.++++|+||.++.-++...+-..+.....-+-.++-+++++++.+.+
T Consensus 1300 FLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAq 1346 (1634)
T PLN03223 1300 ILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAF 1346 (1634)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666665543
No 121
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=30.26 E-value=54 Score=34.01 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=32.4
Q ss_pred ccCCCCCCCCCccccCCCccccccchhhhccCChHHHHHHhHHHHH
Q 011091 10 EASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAE 55 (494)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~da~ 55 (494)
|+|...|+-|+..-++||||...|+.+. .++|+.|+.-..
T Consensus 2 ~~~~~kr~~d~~~p~~gps~k~pr~e~p------v~~A~~fLek~l 41 (392)
T PF07340_consen 2 ESSAGKRKMDSAGPDPGPSPKMPRPEDP------VTRAVQFLEKML 41 (392)
T ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCh------HHHHHHHHHHHH
Confidence 5677789999999999999988887776 478888877654
No 122
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=29.69 E-value=76 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 011091 236 ALGLLFLLFSSWLAYVIFEDT 256 (494)
Q Consensus 236 ~ll~l~~~ifAilg~~lF~~~ 256 (494)
+-..+++.+||++|+.++...
T Consensus 9 FsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 9 FSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556778999999999763
No 123
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=29.26 E-value=3.2e+02 Score=22.63 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHh
Q 011091 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEEL 369 (494)
Q Consensus 340 ~~l~~af~~L~~~~~g~l~~~~~~~l~~~l 369 (494)
..+.+.+..||.+++|.++.++++.+...+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 457788889999999999999998888777
No 124
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=29.22 E-value=4.6e+02 Score=25.71 Aligned_cols=92 Identities=26% Similarity=0.316 Sum_probs=58.6
Q ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHHhHhccCCCch
Q 011091 205 IRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPD 284 (494)
Q Consensus 205 lR~lrli~~~~~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~tLf~l~Tt~~w~d 284 (494)
.|-++++++ +++|+.+ .+|=+.|+.+...+++.++... +.|-|
T Consensus 13 ~~g~~l~~r-pglrrfv-----ilpLl~ni~L~~gl~~~~~~~~-------------------------------~~wid 55 (250)
T COG2981 13 LRGWKLITR-PGLRRFV-----ILPLLLNILLWGGLFWLLFSQA-------------------------------LPWID 55 (250)
T ss_pred HHhhHHhhc-chHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH
Confidence 455666666 7777755 3566667766666665555421 12444
Q ss_pred hhHhhhhc-----CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011091 285 VWIPAYKA-----SRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSE 333 (494)
Q Consensus 285 vm~p~~~~-----~~~~~ifFi~~iii~~~illNLfiAVI~~~F~~~~~~~~~~ 333 (494)
.++|.... +...+++.+.-+.+..+++.....++|-.=|.+-..+++++
T Consensus 56 ~Lm~~iPdWl~wLs~v~~~la~L~lll~~~~lfs~v~~~IAapFng~lAEkvE~ 109 (250)
T COG2981 56 TLMPGIPDWLGWLSYLLWILAVLLLLLVFAFLFSTVANLIAAPFNGLLAEKVEK 109 (250)
T ss_pred HHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44332211 33446677777778888888999999999999887776543
No 125
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=28.12 E-value=89 Score=22.21 Aligned_cols=28 Identities=14% Similarity=0.418 Sum_probs=22.9
Q ss_pred HHHHHHHhhccCCCcccCHHHHHHHHHH
Q 011091 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEE 368 (494)
Q Consensus 341 ~l~~af~~L~~~~~g~l~~~~~~~l~~~ 368 (494)
.+...|..+|.+++|.++.+++...++.
T Consensus 26 e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 26 EVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3667888899999999999998877654
No 126
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=27.78 E-value=1.5e+02 Score=30.97 Aligned_cols=54 Identities=24% Similarity=0.384 Sum_probs=36.7
Q ss_pred hhHhHHHHHHHHhcccH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011091 199 LRIAPYIRVVFFILNIR--QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT 256 (494)
Q Consensus 199 lR~~R~lR~lrli~~~~--~lr~l~~~l~~sl~~i~~v~~ll~l~~~ifAilg~~lF~~~ 256 (494)
+-++|++|..|+.+-++ .=.+=++.+-+++++-+.=+.|+.+|++ +|+.||+..
T Consensus 323 lAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlf----IgviLFsSa 378 (507)
T KOG1545|consen 323 LAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLF----IGVILFSSA 378 (507)
T ss_pred HHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhce
Confidence 45566666666555332 3345677888999988887777655543 689999975
No 127
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=23.15 E-value=3.2e+02 Score=23.94 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011091 306 IGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDN 351 (494)
Q Consensus 306 i~~~illNLfiAVI~~~F~~~~~~~~~~~~~~rr~~l~~af~~L~~ 351 (494)
+.+..++.++.++++-.+.....+...+....+-+.+..|......
T Consensus 9 livlaIigil~~i~~p~~~~~~~~a~~~~~~~~l~~i~~al~~y~~ 54 (134)
T TIGR01710 9 MVVLVILGLLAALVAPKLFSQADKAKAQVAKAQIKALKNALDMYRL 54 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777788887777665544333333333445555554433
No 128
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=21.01 E-value=1.2e+03 Score=26.21 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=16.8
Q ss_pred hHHHHHHHHHH---HHHHHHhhcccCcccc
Q 011091 81 IKFDYIWSLNY---FALIVLNFLEKPLWCA 107 (494)
Q Consensus 81 ~~~~~~~~l~~---f~ll~l~~~E~p~~~~ 107 (494)
+...|.|.+.+ ..+..++|+-.|+...
T Consensus 10 ~~ifw~wnlt~~~l~~~~i~pf~~~p~i~~ 39 (952)
T TIGR02921 10 EGIFWFWNLTFASLTGLGILPFFGLPAILA 39 (952)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccHHHHH
Confidence 34445566655 3445688888888643
No 129
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=20.82 E-value=4.6e+02 Score=21.22 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=23.5
Q ss_pred HHHHHHHhhccCCCcccCHHHHHHHHHHh
Q 011091 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEEL 369 (494)
Q Consensus 341 ~l~~af~~L~~~~~g~l~~~~~~~l~~~l 369 (494)
.+.+.+..+|.+++|.++.+++..++..+
T Consensus 53 ~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 53 VLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 46667778888899999999988887776
No 130
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=20.67 E-value=4.8e+02 Score=21.43 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHH
Q 011091 233 NVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQ 272 (494)
Q Consensus 233 ~v~~ll~l~~~ifAilg~~lF~~~~~g~~~F~~~~~s~~t 272 (494)
...+...++-..++++|=..|+++.| ..|++...++..
T Consensus 45 ~~~l~~~~~g~~~q~~GH~~~E~~~P--a~~~~p~~sl~~ 82 (95)
T PF06127_consen 45 WLALAVFVVGWGLQFIGHFFFEKNKP--AFFDNPLQSLLI 82 (95)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCC--cchhchHHHHHH
Confidence 34444555566778888888888765 568887776654
No 131
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=20.06 E-value=6.9e+02 Score=26.89 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHh
Q 011091 303 YVLIGVYFVTNLILAVVYDS------FKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEEL 369 (494)
Q Consensus 303 ~iii~~~illNLfiAVI~~~------F~~~~~~~~~~~~~~rr~~l~~af~~L~~~~~g~l~~~~~~~l~~~l 369 (494)
+-++...++++++++++..- +++......+....++...+.+-+ .+.....+..+.++|....++.
T Consensus 246 ~~~invl~v~slLl~i~~~~~~ii~~~r~~K~~~~~~~~~~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~ 317 (445)
T PF13608_consen 246 FKFINVLLVISLLLQIANTIRNIINEHRQLKRRAAEEKEEKEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEV 317 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhc
Confidence 34456666777777765433 222222222222223334456666 6666666778888887666654
Done!