BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011095
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 405 DKPVLSRPQHDFFKGPNYFEIDL-DIHRFSYISRKGFESFRN 445
+ P+ S P + F + P+ +DL ++ R SYIS FE N
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 336 VSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE---------RLKIMAGVVN 386
+ E F E + D I++FV D + F + + PF+ R+K++AG++
Sbjct: 142 MKEYFSDEEIKKYTDVIEKFVPDP----EHFRKTTDNPFKALGGNLVDMGRVKVIAGLLR 197
Query: 387 PEDLHLSSTERKLMQAY 403
+D +SST R + Q +
Sbjct: 198 KDDQEISSTIRSIEQVF 214
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 336 VSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE---------RLKIMAGVVN 386
+ E F E + D I++FV D + F + + PF+ R+K++AG++
Sbjct: 140 MKEYFSDEEIKKYTDVIEKFVPDP----EHFRKTTDNPFKALGGNLVDMGRVKVIAGLLR 195
Query: 387 PEDLHLSSTERKLMQAY 403
+D +SST R + Q +
Sbjct: 196 KDDQEISSTIRSIEQVF 212
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 336 VSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE---------RLKIMAGVVN 386
+ E F E + D I++FV D + F + + PF+ R+K++AG++
Sbjct: 142 MKEYFSDEEIKKYTDVIEKFVPDP----EHFRKTTDNPFKALGGNLVDMGRVKVIAGLLR 197
Query: 387 PEDLHLSSTERKLMQAY 403
+D +SST R + Q +
Sbjct: 198 KDDQEISSTIRSIEQVF 214
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 336 VSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE---------RLKIMAGVVN 386
+ E F E + D I++FV D + F + + PF+ R+K++AG++
Sbjct: 140 MKEYFSDEEIKKYTDVIEKFVPDP----EHFRKTTDNPFKALGGNLVDMGRVKVIAGLLR 195
Query: 387 PEDLHLSSTERKLMQAY 403
+D +SST R + Q +
Sbjct: 196 KDDQEISSTIRSIEQVF 212
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 336 VSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE---------RLKIMAGVVN 386
+ E F E + D I++FV D + F + + PF+ R+K++AG++
Sbjct: 140 MKEYFSDEEIKKYTDVIEKFVPDP----EHFRKTTDNPFKALGGNLVDMGRVKVIAGLLR 195
Query: 387 PEDLHLSSTERKLMQAY 403
+D +SST R + Q +
Sbjct: 196 KDDQEISSTIRSIEQVF 212
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 336 VSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE---------RLKIMAGVVN 386
+ E F E + D I++FV D + F + + PF+ R+K++AG++
Sbjct: 140 MKEYFSDEEIKKYTDVIEKFVPDP----EHFRKTTDNPFKALGGNLVDMGRVKVIAGLLR 195
Query: 387 PEDLHLSSTERKLMQAY 403
+D +SST R + Q +
Sbjct: 196 KDDQEISSTIRSIEQVF 212
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 336 VSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE---------RLKIMAGVVN 386
+ E F E + D I++FV D + F + + PF+ R+K++AG++
Sbjct: 142 MKEYFSDEEIKKYTDVIEKFVPDP----EHFRKTTDNPFKALGGNLVDMGRVKVIAGLLR 197
Query: 387 PEDLHLSSTERKLMQAY 403
+D +SST R + Q +
Sbjct: 198 KDDQEISSTIRSIEQVF 214
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 433 SYISRKGFESFRNRLKEGIIDLGLTIQAQKPEELPEQVLCCVRLNK 478
+Y S K + +N L E ++L + IQ ++ + EQV C++ K
Sbjct: 277 AYFSTKSYLDLKNALTEATVNLLVNIQRKREQISREQVFNCLQAGK 322
>pdb|2AM1|A Chain A, Sp Protein Ligand 1
pdb|2AM2|A Chain A, Sp Protein Ligand 2
Length = 454
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 36 VPRKRLNDGGIGDFAVSHEFVHLDFEKGAATTCKRSEVTN 75
VP K DG H+F+ FE GAA T EV+N
Sbjct: 43 VPLKGARDG--------HDFIETAFENGAAVTLSEKEVSN 74
>pdb|3GAS|A Chain A, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|B Chain B, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|C Chain C, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|D Chain D, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|E Chain E, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
pdb|3GAS|F Chain F, Crystal Structure Of Helicobacter Pylori Heme Oxygenase
Hugz In Complex With Heme
Length = 259
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 24/29 (82%)
Query: 140 LQYETASRFVDTGSKYEEFYESYLKIDGG 168
L+Y+T +RF++ G+++++ ++S+++ GG
Sbjct: 167 LRYKTNTRFIERGAEFDKAFDSFIEKTGG 195
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 266 NYSPYVPIGVDLFACSRKINHIAQHLELPQVKTNEKVPSLLIVNIQLPTYPACMFGESDG 325
Y + + V + A NH L P K NEK P+ ++++ Q TY G +
Sbjct: 99 TYPEKISVAVFMSAMMPDPNH---SLTYPFEKYNEKCPADMMLDSQFSTY-----GNPEN 150
Query: 326 EGMSLVL 332
GMS++L
Sbjct: 151 PGMSMIL 157
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 266 NYSPYVPIGVDLFACSRKINHIAQHLELPQVKTNEKVPSLLIVNIQLPTYPACMFGESDG 325
Y + + V + A NH L P K NEK P+ ++++ Q TY G +
Sbjct: 99 TYPEKISVAVFMSAMMPDPNH---SLTYPFEKYNEKCPADMMLDSQFSTY-----GNPEN 150
Query: 326 EGMSLVL 332
GMS++L
Sbjct: 151 PGMSMIL 157
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 266 NYSPYVPIGVDLFACSRKINHIAQHLELPQVKTNEKVPSLLIVNIQLPTYPACMFGESDG 325
Y + + V + A NH L P K NEK P+ ++++ Q TY G +
Sbjct: 99 TYPEKISVAVFMSAMMPDPNH---SLTYPFEKYNEKCPADMMLDSQFSTY-----GNPEN 150
Query: 326 EGMSLVL 332
GMS++L
Sbjct: 151 PGMSMIL 157
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 266 NYSPYVPIGVDLFACSRKINHIAQHLELPQVKTNEKVPSLLIVNIQLPTYPACMFGESDG 325
Y + + V + A NH L P K NEK P+ ++++ Q TY G +
Sbjct: 93 TYPEKISVAVFMSAMMPDPNH---SLTYPFEKYNEKCPADMMLDSQFSTY-----GNPEN 144
Query: 326 EGMSLVL 332
GMS++L
Sbjct: 145 PGMSMIL 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,859,079
Number of Sequences: 62578
Number of extensions: 626911
Number of successful extensions: 1065
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 18
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)