BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011095
(494 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2
PE=1 SV=1
Length = 234
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 98 EEAWYDSVSIIDSDSDDDYSSVHGDTFPSVG-TPIGHISN 136
+E ++DS + SDSDDD+ SV+GD PS+G TP S+
Sbjct: 82 DETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSD 121
>sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1 OS=Mus musculus GN=Topbp1
PE=1 SV=2
Length = 1515
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 32/171 (18%)
Query: 3 GCISVHSGKSRVHRKYFRKY-GKRRGKFSALIHNVPRKRLNDGGIGDFAVSHEFVHLDFE 61
GCI +G + +HRK ++ K G++ +G + +E HL +
Sbjct: 202 GCIICVTGLNGIHRKTVQQLTAKHGGQY----------------MGQLKM-NECTHLIVQ 244
Query: 62 --KGAATTCKRSEVTNKNFHVTQMQWNHSQIDSNGICQEEAWYDSVSIIDSDSDDDYSSV 119
KG C R N H +QW H I+ G CQ+E+ Y + + +++ D S+
Sbjct: 245 EPKGQKYECAR----RWNVHCVTLQWFHDSIE-KGFCQDESIYKAETRVEAKMVPDTSTP 299
Query: 120 HGDTFPSVGT--PIGHIS--NGQLLQYETASRFVDTGSKYEEFYESYLKID 166
+ T + HIS NG + + F T SK E E+ +D
Sbjct: 300 TAQSNAESHTLADVSHISNINGSCV---NETMFGSTTSKLECSLENLENLD 347
>sp|B9DV63|RECU_STRU0 Holliday junction resolvase RecU OS=Streptococcus uberis (strain
ATCC BAA-854 / 0140J) GN=recU PE=3 SV=1
Length = 202
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 48 DFAVSHEFVHLDFEKGAATTCKRSEVTNKNFHVTQMQWNHSQIDSNGIC 96
D++ ++ +++DFE A T +++ + KNFH+ Q++ S +D GIC
Sbjct: 87 DYSGVYKGLYIDFE--AKETRQKTAMPMKNFHLHQIEHMASVLDQKGIC 133
>sp|A5UAS0|GPDA_HAEIE Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Haemophilus
influenzae (strain PittEE) GN=gpsA PE=3 SV=1
Length = 335
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 375 RERLKIMAGVVNPEDLHLSSTERKLMQAYNDKPVLSRPQHDFFKGPNYFEIDLDIHRFSY 434
R+ + + V+ PEDLHL S + M+ Y+ ++ P H F + + L H
Sbjct: 48 RQNYRFLPDVIFPEDLHLESNLAQAME-YSQDILIVVPSHAFGEILIKIKPHLKAHHRLI 106
Query: 435 ISRKGFESFRNRLKEGIID 453
+ KG E RL + +++
Sbjct: 107 WATKGLERNTGRLLQTVVE 125
>sp|Q4QMJ1|GPDA_HAEI8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Haemophilus
influenzae (strain 86-028NP) GN=gpsA PE=3 SV=1
Length = 335
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 375 RERLKIMAGVVNPEDLHLSSTERKLMQAYNDKPVLSRPQHDFFKGPNYFEIDLDIHRFSY 434
R+ + + V+ PEDLHL S + M+ Y+ ++ P H F + + L H
Sbjct: 48 RQNYRFLPDVIFPEDLHLESNLAQAME-YSQDILIVVPSHAFGEILIKIKPHLKAHHRLI 106
Query: 435 ISRKGFESFRNRLKEGIID 453
+ KG E RL + +++
Sbjct: 107 WATKGLERNTGRLLQTVVE 125
>sp|P43798|GPDA_HAEIN Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=gpsA PE=3 SV=1
Length = 335
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 375 RERLKIMAGVVNPEDLHLSSTERKLMQAYNDKPVLSRPQHDFFKGPNYFEIDLDIHRFSY 434
R+ + + V+ PEDLHL S + M+ Y+ ++ P H F + + L H
Sbjct: 48 RQNYRFLPDVIFPEDLHLESNLAQAME-YSQDILIVVPSHAFGEILIKIKPHLKAHHRLI 106
Query: 435 ISRKGFESFRNRLKEGIID 453
+ KG E RL + +++
Sbjct: 107 WATKGLERNTGRLLQTVVE 125
>sp|P51112|HD_TAKRU Huntingtin OS=Takifugu rubripes GN=htt PE=3 SV=1
Length = 3148
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 263 PAPNYSPYVPI-------GVDLFACSRKINHIAQHLELPQVKTNEKVPSLLIVNI 310
PAP P PI GVD+ +CS+ + + +P +N K P++LI +
Sbjct: 2651 PAPTSPPLSPINSRKHRAGVDIHSCSQFLLELYSQWVIPGSPSNRKTPTILISEV 2705
>sp|A0E2L1|SEY12_PARTE Protein SEY1 homolog 2 OS=Paramecium tetraurelia
GN=GSPATT00022700001 PE=3 SV=1
Length = 749
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 282 RKINHIAQHLELPQVKTNEKVPSLLIVNIQLPTYPACMFGESDGEGMSLVLYFRVSETFE 341
RKI I Q QV +K +L+I + Q Y +SD ++ V Y +V
Sbjct: 596 RKIKFIRQ-----QVVLKKKAQTLIISSSQKVQYQISSDADSDDVVLNDVFYTQVKMQLA 650
Query: 342 KEISVHFQDSIKRFVDDEMEKV 363
++I V +QD+I++ D ++ +
Sbjct: 651 EDIDVQYQDAIQKHKQDFLQNI 672
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,332,254
Number of Sequences: 539616
Number of extensions: 9117433
Number of successful extensions: 23455
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 23452
Number of HSP's gapped (non-prelim): 14
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)