Query         011095
Match_columns 494
No_of_seqs    155 out of 238
Neff          4.1 
Searched_HMMs 46136
Date          Fri Mar 29 08:03:36 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011095hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF07059 DUF1336:  Protein of u 100.0   7E-75 1.5E-79  562.1  20.9  222  240-480     1-227 (227)
  2 PLN00188 enhanced disease resi 100.0 6.6E-66 1.4E-70  557.7  18.9  227  223-490   485-714 (719)
  3 KOG1909 Ran GTPase-activating   18.8      71  0.0015   34.6   1.9   73  419-491    29-109 (382)
  4 PF06348 DUF1059:  Protein of u  11.4      39 0.00085   26.9  -1.8   27  449-475     8-34  (57)
  5 COG5238 RNA1 Ran GTPase-activa  11.4 1.1E+02  0.0024   32.7   1.0   66  420-485    30-103 (388)
  6 PF06601 Orthopox_F6:  Orthopox   9.3      66  0.0014   27.0  -1.2   32  113-147    38-70  (72)
  7 PF04308 DUF458:  Protein of un   8.6   2E+02  0.0043   27.4   1.5   31  423-458    96-126 (144)
  8 KOG2964 Arginase family protei   7.8 3.3E+02  0.0071   29.3   2.8   40  377-430   250-289 (361)
  9 COG1521 Pantothenate kinase ty   7.8 5.4E+02   0.012   26.4   4.3  108  327-456    19-131 (251)
 10 PTZ00062 glutaredoxin; Provisi   6.6 4.3E+02  0.0094   26.1   2.9   56  395-453   102-175 (204)

No 1  
>PF07059 DUF1336:  Protein of unknown function (DUF1336);  InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00  E-value=7e-75  Score=562.11  Aligned_cols=222  Identities=48%  Similarity=0.805  Sum_probs=208.3

Q ss_pred             cccCCCCceEecCCCCCCCCCcccCCCCCCcceeEeeeeecCcccchhhcccCccccccCC-CCCeEEEEEEEcCCCCCc
Q 011095          240 WSELSPSVFRLRGENYFRDKQKTPAPNYSPYVPIGVDLFACSRKINHIAQHLELPQVKTNE-KVPSLLIVNIQLPTYPAC  318 (494)
Q Consensus       240 WSepd~s~FkVRG~~Yl~DKkKvpA~~~al~~lvgVDlF~s~~ki~hIA~~~~lp~~~~~~-~~P~vfIVNiQlP~~P~~  318 (494)
                      ||+|++++|+|||+|||+||+|+||+++ +|+++|||||++++|++|||+|+.++..+... +.||+||||||||+||++
T Consensus         1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~   79 (227)
T PF07059_consen    1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS   79 (227)
T ss_pred             CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence            9999999999999999999999999976 89999999999999999999999888766544 589999999999999999


Q ss_pred             CCCCCCCCceEEEEEEeeCchhhhhhchhhHHHHHHHhhhhhhhhcccccCCChhhh-cceeeeeeeeCCCccccchHHH
Q 011095          319 MFGESDGEGMSLVLYFRVSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFR-ERLKIMAGVVNPEDLHLSSTER  397 (494)
Q Consensus       319 ~Fg~~DGeg~SlVlYF~l~e~~~kei~~~f~~ll~Rfl~~e~Ekvkgf~~d~dd~fR-~RfKLIp~VVng~wl~L~~~~r  397 (494)
                      +|++.||+|||+|+||++++++.++..+.|.++++||++++.         .+|+|| +||||||+|+||+|+       
T Consensus        80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~---------~~d~frn~RfKlIp~vv~gpwi-------  143 (227)
T PF07059_consen   80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDE---------VEDAFRNERFKLIPRVVNGPWI-------  143 (227)
T ss_pred             cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCc---------cchhhhhccEEEEEEEcCCchh-------
Confidence            999999999999999999999988888889999999998631         137899 799999999999997       


Q ss_pred             HHHHhh-CCeeeeec--CceeeeeCCCEEEEEEeccCchHHHHHHHHhhhcccccEEEeeeEEeecCCCCCCccceecee
Q 011095          398 KLMQAY-NDKPVLSR--PQHDFFKGPNYFEIDLDIHRFSYISRKGFESFRNRLKEGIIDLGLTIQAQKPEELPEQVLCCV  474 (494)
Q Consensus       398 ~v~qav-n~KPvLir--~q~~y~~G~nY~EIDVDIhsFS~IAr~~l~lv~g~~k~LVVDlGFvIEGqteeELPErLLG~v  474 (494)
                       +++++ |+||||++  ++|+||+|+||||||||||+ |+|||++++++++|+|+|+|||||||||+++||||||||||+
T Consensus       144 -vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~  221 (227)
T PF07059_consen  144 -VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCV  221 (227)
T ss_pred             -hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEE
Confidence             67776 99999987  79999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             eecccc
Q 011095          475 RLNKIG  480 (494)
Q Consensus       475 RL~~iD  480 (494)
                      ||++||
T Consensus       222 Rl~~id  227 (227)
T PF07059_consen  222 RLNHID  227 (227)
T ss_pred             EeeecC
Confidence            999998


No 2  
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00  E-value=6.6e-66  Score=557.66  Aligned_cols=227  Identities=27%  Similarity=0.457  Sum_probs=210.2

Q ss_pred             CCCCcccCCCCCCCCCccccCCCCceEecCCCCCCCCCcccCCCCCCcceeEeeeeecCcccchhhcccCccccccCCCC
Q 011095          223 AGFLVPRATGEKSNPGCWSELSPSVFRLRGENYFRDKQKTPAPNYSPYVPIGVDLFACSRKINHIAQHLELPQVKTNEKV  302 (494)
Q Consensus       223 ag~~vp~~~~e~~~~~~WSepd~s~FkVRG~~Yl~DKkKvpA~~~al~~lvgVDlF~s~~ki~hIA~~~~lp~~~~~~~~  302 (494)
                      .++++|+.+.++ ..+||++|++++|+|||++||+||+|+||+++ +|+|+|||||++++|++|||+|+..+.....++.
T Consensus       485 ~~g~l~~~~~~~-~~ncWs~Pd~~~F~VRG~~Yl~Dk~KvPAg~~-l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k~  562 (719)
T PLN00188        485 FSGNLRRDDRDK-ARDCWRISDGNNFKVRSKNFCYDKSKIPAGKH-LMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEKG  562 (719)
T ss_pred             cccccccCCCCC-CCCCccCCCCcceEEcCCCcccCCccccCCcc-ceeeEEEEEEcCCchhhHhhcCCCchhhhhcccC
Confidence            788999988876 69999999999999999999999999999986 7999999999999999999999988877777788


Q ss_pred             CeEEEEEEEcCCCCCcCCCCCCCCceEEEEEEeeCchhhhhhchhhHHHHHHHhhhhhhhhcccccCCChhhh-cceeee
Q 011095          303 PSLLIVNIQLPTYPACMFGESDGEGMSLVLYFRVSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFR-ERLKIM  381 (494)
Q Consensus       303 P~vfIVNiQlP~~P~~~Fg~~DGeg~SlVlYF~l~e~~~kei~~~f~~ll~Rfl~~e~Ekvkgf~~d~dd~fR-~RfKLI  381 (494)
                      ||+||||||||+.|          +||+|+||++++     +.+  ..++.||+++            ||+|| +|||||
T Consensus       563 ~F~fiVNlQvPg~~----------~ys~V~Yf~~~~-----l~~--~sLl~rF~~G------------DD~fRnsRfKLI  613 (719)
T PLN00188        563 LFSFVVNLQVPGST----------HYSMVFYFVTKE-----LVP--GSLLQRFVDG------------DDEFRNSRLKLI  613 (719)
T ss_pred             CcEEEEEEEccCCC----------ceEEEEEEeccC-----CCC--chHHHHhccC------------chhHhhCceEEe
Confidence            99999999999966          599999999854     333  3789999986            68999 699999


Q ss_pred             eeeeCCCccccchHHHHHHHhhCCeeeeec--CceeeeeCCCEEEEEEeccCchHHHHHHHHhhhcccccEEEeeeEEee
Q 011095          382 AGVVNPEDLHLSSTERKLMQAYNDKPVLSR--PQHDFFKGPNYFEIDLDIHRFSYISRKGFESFRNRLKEGIIDLGLTIQ  459 (494)
Q Consensus       382 p~VVng~wl~L~~~~r~v~qavn~KPvLir--~q~~y~~G~nY~EIDVDIhsFS~IAr~~l~lv~g~~k~LVVDlGFvIE  459 (494)
                      |.|++||||        |+++||+||||+|  ++|+||+|+|||||||||+| |.||++++++++||+++|||||||+||
T Consensus       614 P~Iv~GpWi--------Vk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~s-s~va~~v~~l~~g~~~~lvvD~af~ie  684 (719)
T PLN00188        614 PSVPKGSWI--------VRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGS-STVANGVLGLVIGVITTLVVDMAFLVQ  684 (719)
T ss_pred             ccccCCceE--------EEeccCCcceEeeeecceeEecCCCeEEEEEeecc-HHHHHHHHHHHHhhhhheEEEEEEEEe
Confidence            999999998        9999999999998  69999999999999999999 899999999999999999999999999


Q ss_pred             cCCCCCCccceeceeeecccccCCCCCCCCc
Q 011095          460 AQKPEELPEQVLCCVRLNKIGFENHGQIPTI  490 (494)
Q Consensus       460 GqteeELPErLLG~vRL~~iDl~~a~~~P~~  490 (494)
                      ||++|||||||||||||++||+..|. +|.+
T Consensus       685 ~~~~eELPE~llG~~Rl~~i~~~~A~-~~~~  714 (719)
T PLN00188        685 ANTYEELPERLIGAVRVSHVELSSAI-VPKL  714 (719)
T ss_pred             cCChhhCchhheeeEEecccchhhcc-ccCC
Confidence            99999999999999999999999985 5544


No 3  
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=18.75  E-value=71  Score=34.63  Aligned_cols=73  Identities=19%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             CCCEEEEEEeccCchHHHHHHHHhhhcccccE-EEeeeEEeecCCCCCCccce-------eceeeecccccCCCCCCCCc
Q 011095          419 GPNYFEIDLDIHRFSYISRKGFESFRNRLKEG-IIDLGLTIQAQKPEELPEQV-------LCCVRLNKIGFENHGQIPTI  490 (494)
Q Consensus       419 G~nY~EIDVDIhsFS~IAr~~l~lv~g~~k~L-VVDlGFvIEGqteeELPErL-------LG~vRL~~iDl~~a~~~P~~  490 (494)
                      ...|-+||++=.+|+.=|.+.+.-++...+.| .+|+.=..-|+-.+|+||.|       +||-+|..+|+++..==|+.
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            45688999999999999999999999998888 68888889999999999964       58889999999997655544


Q ss_pred             c
Q 011095          491 V  491 (494)
Q Consensus       491 ~  491 (494)
                      +
T Consensus       109 ~  109 (382)
T KOG1909|consen  109 I  109 (382)
T ss_pred             h
Confidence            3


No 4  
>PF06348 DUF1059:  Protein of unknown function (DUF1059);  InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=11.43  E-value=39  Score=26.88  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             cEEEeeeEEeecCCCCCCccceeceee
Q 011095          449 EGIIDLGLTIQAQKPEELPEQVLCCVR  475 (494)
Q Consensus       449 ~LVVDlGFvIEGqteeELPErLLG~vR  475 (494)
                      .+..|.+|+|.|.+++||-+++.--.|
T Consensus         8 d~g~~C~~~~~a~tedEll~~~~~Ha~   34 (57)
T PF06348_consen    8 DVGPDCGFVIRAETEDELLEAVVEHAR   34 (57)
T ss_pred             ccCCCCCeEEeeCCHHHHHHHHHHHHH
Confidence            456789999999999999888765443


No 5  
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=11.41  E-value=1.1e+02  Score=32.71  Aligned_cols=66  Identities=15%  Similarity=0.309  Sum_probs=53.0

Q ss_pred             CCEEEEEEeccCchHHHHHHHHhhhcccccE-EEeeeEEeecCCCCCCccc-------eeceeeecccccCCCC
Q 011095          420 PNYFEIDLDIHRFSYISRKGFESFRNRLKEG-IIDLGLTIQAQKPEELPEQ-------VLCCVRLNKIGFENHG  485 (494)
Q Consensus       420 ~nY~EIDVDIhsFS~IAr~~l~lv~g~~k~L-VVDlGFvIEGqteeELPEr-------LLG~vRL~~iDl~~a~  485 (494)
                      +...|||+-=..|+.=|...+.-++...++| ++.++=..-|+.-+|||+.       ||+|=||..+|+++..
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            4567888876667777777777777777777 6778778889999999986       5799999999999854


No 6  
>PF06601 Orthopox_F6:  Orthopoxvirus F6 protein;  InterPro: IPR009521 This family consists of several Orthopoxvirus F6L proteins the function of which is unknown.
Probab=9.30  E-value=66  Score=26.95  Aligned_cols=32  Identities=38%  Similarity=0.444  Sum_probs=21.9

Q ss_pred             CCCcccccC-CCCCCCCCCCCCCCCcccccccccce
Q 011095          113 DDDYSSVHG-DTFPSVGTPIGHISNGQLLQYETASR  147 (494)
Q Consensus       113 dd~f~Sv~~-d~~~~~~~~~~~~~~~~~~~~~~~~~  147 (494)
                      .|+++--|| ||+-..   ..+++++.+-||+..|-
T Consensus        38 ~d~~~ANHGFDCVe~~---~~~isnE~lEqykt~sf   70 (72)
T PF06601_consen   38 VDEVTANHGFDCVEMI---DENISNENLEQYKTDSF   70 (72)
T ss_pred             hhhhhccCCccHHHHh---ccccchHHHHHhhhhhc
Confidence            344577788 875442   45678999999987654


No 7  
>PF04308 DUF458:  Protein of unknown function (DUF458) ;  InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=8.57  E-value=2e+02  Score=27.37  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=24.4

Q ss_pred             EEEEEeccCchHHHHHHHHhhhcccccEEEeeeEEe
Q 011095          423 FEIDLDIHRFSYISRKGFESFRNRLKEGIIDLGLTI  458 (494)
Q Consensus       423 ~EIDVDIhsFS~IAr~~l~lv~g~~k~LVVDlGFvI  458 (494)
                      +||.+||+. ..-+|..+.-+.|++..    |||.-
T Consensus        96 ~EiHiDIg~-~g~T~~~i~E~vG~v~~----~G~~~  126 (144)
T PF04308_consen   96 LEIHIDIGT-NGKTRELIKEVVGYVEG----MGFEA  126 (144)
T ss_pred             EEEEEEcCC-CCchHHHHHHHHHHHHH----CCceE
Confidence            899999998 77788888888887665    56544


No 8  
>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism]
Probab=7.84  E-value=3.3e+02  Score=29.32  Aligned_cols=40  Identities=23%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             ceeeeeeeeCCCccccchHHHHHHHhhCCeeeeecCceeeeeCCCEEEEEEecc
Q 011095          377 RLKIMAGVVNPEDLHLSSTERKLMQAYNDKPVLSRPQHDFFKGPNYFEIDLDIH  430 (494)
Q Consensus       377 RfKLIp~VVng~wl~L~~~~r~v~qavn~KPvLir~q~~y~~G~nY~EIDVDIh  430 (494)
                      =|++|- .-+-..+++......+++.+|.|+|             |+-||||+-
T Consensus       250 Gf~~ie-are~~~~gi~~i~e~ir~~~G~k~v-------------YiSiDID~L  289 (361)
T KOG2964|consen  250 GFEIIE-AREIDKIGIDPIVERIRQRVGDKLV-------------YISIDIDVL  289 (361)
T ss_pred             CeEEEE-eeehhhhhhHHHHHHHHHhcCCceE-------------EEEEeeccc
Confidence            456553 2233445566677889999999999             899999985


No 9  
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=7.79  E-value=5.4e+02  Score=26.44  Aligned_cols=108  Identities=18%  Similarity=0.127  Sum_probs=58.2

Q ss_pred             ceEEEEEEeeCchhhhhhchhhHHHHHHHhhhhhhhhcccccCCChhhhc-ceeeeeeeeCCCccccchHHHHHHHhhCC
Q 011095          327 GMSLVLYFRVSETFEKEISVHFQDSIKRFVDDEMEKVKGFARESTVPFRE-RLKIMAGVVNPEDLHLSSTERKLMQAYND  405 (494)
Q Consensus       327 g~SlVlYF~l~e~~~kei~~~f~~ll~Rfl~~e~Ekvkgf~~d~dd~fR~-RfKLIp~VVng~wl~L~~~~r~v~qavn~  405 (494)
                      +-.++.+|++..+-... .+++...+..+++.            + .++. ...+|..|+  |-+. -..+..+.+....
T Consensus        19 ~~~~~~~~r~~t~~~~~-~del~~~~~~l~~~------------~-~~~~~~~~~issvv--p~~~-~~~~~~~~~~f~~   81 (251)
T COG1521          19 GGKVVQTWRLATEDLLT-EDELGLQLHNLFDG------------N-SVRDIDGIVISSVV--PPLG-IFLEAVLKEYFKV   81 (251)
T ss_pred             CCeEEEEEeeccccccc-HHHHHHHHHHHhcc------------c-cccccccceeeccC--ccHH-HHHHHHHHHHhcc
Confidence            35889999997643221 12222233333332            1 2333 668899988  3332 2234456677788


Q ss_pred             ee-eeecC---ceeeeeCCCEEEEEEeccCchHHHHHHHHhhhcccccEEEeeeE
Q 011095          406 KP-VLSRP---QHDFFKGPNYFEIDLDIHRFSYISRKGFESFRNRLKEGIIDLGL  456 (494)
Q Consensus       406 KP-vLir~---q~~y~~G~nY~EIDVDIhsFS~IAr~~l~lv~g~~k~LVVDlGF  456 (494)
                      +| ++..+   ..-....++|-|+-+|.-- ..+|-..   .-+ -.-+|||+|=
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~p~elG~DR~~-n~vaA~~---~~~-~~~vVVD~GT  131 (251)
T COG1521          82 KPLVVISPKQLLGIRVLYDNPEELGADRIA-NAVAAYH---KYG-KAVVVVDFGT  131 (251)
T ss_pred             CceeeechhhccCCcccCCChhhhcHHHHH-HHHHHHH---HcC-CcEEEEEcCC
Confidence            88 55442   2234455899999999754 2221111   111 1257888874


No 10 
>PTZ00062 glutaredoxin; Provisional
Probab=6.56  E-value=4.3e+02  Score=26.07  Aligned_cols=56  Identities=16%  Similarity=0.212  Sum_probs=36.8

Q ss_pred             HHHHHHHhhCCeeeee---c----Cceeeee---------CCCEEEEEEeccCchHHHHHHHHhhhcc--cccEEEe
Q 011095          395 TERKLMQAYNDKPVLS---R----PQHDFFK---------GPNYFEIDLDIHRFSYISRKGFESFRNR--LKEGIID  453 (494)
Q Consensus       395 ~~r~v~qavn~KPvLi---r----~q~~y~~---------G~nY~EIDVDIhsFS~IAr~~l~lv~g~--~k~LVVD  453 (494)
                      +..++.+.++.+||++   +    |.|.|.+         |-.|-|+||+-..   -+|..+.-..++  +..+.|+
T Consensus       102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~TvPqVfI~  175 (204)
T PTZ00062        102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPTYPQLYVN  175 (204)
T ss_pred             HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCCCCeEEEC
Confidence            3456888899999986   2    4677764         6789999988442   346666555444  3455555


Done!