Query 011095
Match_columns 494
No_of_seqs 155 out of 238
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 15.8 38 0.0013 24.4 0.4 20 447-466 13-32 (37)
2 3bqa_A Sensor protein PHOQ; hi 7.2 88 0.003 28.6 -0.2 35 413-448 68-102 (148)
3 1h1y_A D-ribulose-5-phosphate 6.2 4.3E+02 0.015 24.1 4.0 64 377-458 6-73 (228)
4 2k47_A Phosphoprotein, P prote 5.9 71 0.0024 26.2 -1.3 16 111-126 32-47 (79)
5 3eaa_A EVPC; T6SS, unknown fun 5.2 4.6E+02 0.016 23.3 3.4 26 72-97 122-147 (163)
6 2zou_A Spondin-1; beta-sandwic 5.2 2.6E+02 0.009 24.6 1.8 24 454-477 54-80 (149)
7 3l4n_A Monothiol glutaredoxin- 5.1 4.3E+02 0.015 22.4 3.0 57 397-453 5-77 (127)
8 3coo_A Spondin-1; reelin-N dom 4.2 2.5E+02 0.0086 25.9 0.9 24 454-477 69-95 (180)
9 3npd_A Putative secreted prote 3.9 4.3E+02 0.015 23.0 2.1 15 448-462 29-43 (118)
10 1rpx_A Protein (ribulose-phosp 3.7 1.2E+03 0.04 20.9 5.0 24 376-399 9-32 (230)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=15.75 E-value=38 Score=24.41 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=15.3
Q ss_pred cccEEEeeeEEeecCCCCCC
Q 011095 447 LKEGIIDLGLTIQAQKPEEL 466 (494)
Q Consensus 447 ~k~LVVDlGFvIEGqteeEL 466 (494)
+=++..|+||.++...+|.+
T Consensus 13 LFSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 13 LFSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred eEEEEeccccccCCcchhhh
Confidence 34579999999998776654
No 2
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=7.23 E-value=88 Score=28.59 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=22.8
Q ss_pred ceeeeeCCCEEEEEEeccCchHHHHHHHHhhhcccc
Q 011095 413 QHDFFKGPNYFEIDLDIHRFSYISRKGFESFRNRLK 448 (494)
Q Consensus 413 q~~y~~G~nY~EIDVDIhsFS~IAr~~l~lv~g~~k 448 (494)
+..|.+.++|+|||.|++. |...-+.-..++.+++
T Consensus 68 ~~eWLkk~gf~Eidtd~~~-s~~~L~~~~~~q~~L~ 102 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVND-TSLLLSGDHSIQQQLQ 102 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHH-HHHHHCSCHHHHHHHH
T ss_pred CHHHhcCCCcEEEecCcch-HHHHhcCCHHHHHHHH
Confidence 5568888999999999997 4333333334444443
No 3
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=6.19 E-value=4.3e+02 Score=24.08 Aligned_cols=64 Identities=20% Similarity=0.418 Sum_probs=36.5
Q ss_pred ceeeeeeeeCCCccccchHHHHHHHhhCCeeeeecCceeeeeCCCEEEEEE-eccCc---hHHHHHHHHhhhcccccEEE
Q 011095 377 RLKIMAGVVNPEDLHLSSTERKLMQAYNDKPVLSRPQHDFFKGPNYFEIDL-DIHRF---SYISRKGFESFRNRLKEGII 452 (494)
Q Consensus 377 RfKLIp~VVng~wl~L~~~~r~v~qavn~KPvLir~q~~y~~G~nY~EIDV-DIhsF---S~IAr~~l~lv~g~~k~LVV 452 (494)
+-+|+|.|..++...|....+.+.++ |-+|+++|+ |-+ | +++.-..+..++..+ ...+
T Consensus 6 ~~~i~psi~a~d~~~l~~~i~~~~~~----------------Gad~i~l~i~Dg~-fv~~~~~~~~~~~~lr~~~-~~~~ 67 (228)
T 1h1y_A 6 AAKIAPSMLSSDFANLAAEADRMVRL----------------GADWLHMDIMDGH-FVPNLTIGAPVIQSLRKHT-KAYL 67 (228)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHT----------------TCSEEEEEEEBSS-SSSCBCBCHHHHHHHHTTC-CSEE
T ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHc----------------CCCEEEEEEecCC-cCcchhhCHHHHHHHHhhc-CCcE
Confidence 45899999999977665544444332 456777775 211 1 111123334444444 4567
Q ss_pred eeeEEe
Q 011095 453 DLGLTI 458 (494)
Q Consensus 453 DlGFvI 458 (494)
|+.+.|
T Consensus 68 ~v~lmv 73 (228)
T 1h1y_A 68 DCHLMV 73 (228)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 777777
No 4
>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus}
Probab=5.94 E-value=71 Score=26.24 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=12.7
Q ss_pred CCCCCcccccCCCCCC
Q 011095 111 DSDDDYSSVHGDTFPS 126 (494)
Q Consensus 111 d~dd~f~Sv~~d~~~~ 126 (494)
.|..|||||-||+.++
T Consensus 32 sSr~Ef~SV~~~G~~~ 47 (79)
T 2k47_A 32 SSRGEFISVGGDGRMS 47 (79)
T ss_dssp CCHHHHHHHHCCSCCC
T ss_pred cCcCcEEEECCCcchh
Confidence 5678899999997554
No 5
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=5.24 E-value=4.6e+02 Score=23.30 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.0
Q ss_pred cccccceeeeeeeeccccccCCCccc
Q 011095 72 EVTNKNFHVTQMQWNHSQIDSNGICQ 97 (494)
Q Consensus 72 ~~~~~~~h~tq~~~~~~q~d~~~~~~ 97 (494)
+.-.++|..+.+.|.|.+.|+.|...
T Consensus 122 p~E~vsl~y~kI~w~y~~q~~~G~~~ 147 (163)
T 3eaa_A 122 PQETIDFAYKEVTWEYVPQDQNGKAG 147 (163)
T ss_dssp CEEEEEEECSEEECCBCCBCTTSSBC
T ss_pred eEEEEEEEeeEeEEEEEEECCCCCcC
Confidence 55567899999999999999877443
No 6
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=5.23 E-value=2.6e+02 Score=24.64 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=18.9
Q ss_pred eeEEeecCCCCCC---ccceeceeeec
Q 011095 454 LGLTIQAQKPEEL---PEQVLCCVRLN 477 (494)
Q Consensus 454 lGFvIEGqteeEL---PErLLG~vRL~ 477 (494)
.||+||++.++.. +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 5899999887654 56789998875
No 7
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=5.14 E-value=4.3e+02 Score=22.41 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHhhCCeeeee--cCceeee------------eCCCEEEEEEeccCchHHHHHHHHhhhcc--cccEEEe
Q 011095 397 RKLMQAYNDKPVLS--RPQHDFF------------KGPNYFEIDLDIHRFSYISRKGFESFRNR--LKEGIID 453 (494)
Q Consensus 397 r~v~qavn~KPvLi--r~q~~y~------------~G~nY~EIDVDIhsFS~IAr~~l~lv~g~--~k~LVVD 453 (494)
..+.+.++..||.+ .+.|.|. -+..|-++|||...-..-.+..+....|+ +..+.||
T Consensus 5 ~~~~~ii~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~ 77 (127)
T 3l4n_A 5 KEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN 77 (127)
T ss_dssp HHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHHHccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence 34667777788876 3566544 15689999999874223344445433333 5566555
No 8
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=4.24 E-value=2.5e+02 Score=25.92 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=18.9
Q ss_pred eeEEeecCCCCCC---ccceeceeeec
Q 011095 454 LGLTIQAQKPEEL---PEQVLCCVRLN 477 (494)
Q Consensus 454 lGFvIEGqteeEL---PErLLG~vRL~ 477 (494)
.||+||++.++.. +...+|.+.+.
T Consensus 69 ~GFlLqAr~~~~~~~~~~~~vGtF~~~ 95 (180)
T 3coo_A 69 RGFTLIALRENREGDKEEDHAGTFQII 95 (180)
T ss_dssp SCCEEEEEETTCCSSSGGGBCSEEECS
T ss_pred eEEEEEEEcCCCCccCCCCceeEEEec
Confidence 4899999887664 56789999864
No 9
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=3.92 E-value=4.3e+02 Score=23.04 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.0
Q ss_pred ccEEEeeeEEeecCC
Q 011095 448 KEGIIDLGLTIQAQK 462 (494)
Q Consensus 448 k~LVVDlGFvIEGqt 462 (494)
..=++|-|+++||..
T Consensus 29 nEdiLDqgYTVeG~~ 43 (118)
T 3npd_A 29 NEDILDQGYTVEGNQ 43 (118)
T ss_dssp SSSEEEEEEEEETTE
T ss_pred hhHHhhcceeechHH
Confidence 444899999999963
No 10
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=3.67 E-value=1.2e+03 Score=20.89 Aligned_cols=24 Identities=4% Similarity=0.166 Sum_probs=16.1
Q ss_pred cceeeeeeeeCCCccccchHHHHH
Q 011095 376 ERLKIMAGVVNPEDLHLSSTERKL 399 (494)
Q Consensus 376 ~RfKLIp~VVng~wl~L~~~~r~v 399 (494)
...||+|.|..+++..+....+.+
T Consensus 9 ~~~~i~p~i~a~d~~~~~~~i~~~ 32 (230)
T 1rpx_A 9 SDIIVSPSILSANFSKLGEQVKAI 32 (230)
T ss_dssp TSCEEEEBGGGSCGGGHHHHHHHH
T ss_pred CceEEEEEeecCCHHHHHHHHHHH
Confidence 466899999999876544433333
Done!