Query 011095
Match_columns 494
No_of_seqs 155 out of 238
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 20:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011095.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011095hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5aa1 c.43.1.2 (A:1-174) Vib 6.6 2.1E+02 0.015 22.3 4.2 32 323-357 16-47 (174)
2 d2gw6a1 c.52.2.1 (A:2-123) tRN 6.4 53 0.0039 27.1 0.1 66 255-337 56-121 (122)
3 d1eucb1 c.23.4.1 (B:246-393) S 5.7 1.1E+02 0.0083 25.5 1.9 26 381-408 21-46 (148)
4 d2nu7b1 c.23.4.1 (B:239-388) S 4.6 1.5E+02 0.011 24.6 1.9 26 381-408 21-46 (150)
5 d2fsra1 d.108.1.1 (A:4-167) Pr 4.4 1.5E+02 0.011 22.2 1.6 22 454-477 142-163 (164)
6 d1m4ua_ g.17.1.7 (A:) Noggin { 4.3 1.4E+02 0.0099 26.2 1.4 30 65-102 163-192 (206)
7 d1wika_ c.47.1.1 (A:) Thioredo 4.1 75 0.0054 24.6 -0.5 34 398-431 7-56 (109)
8 d1h1ya_ c.1.2.2 (A:) D-ribulos 3.8 3.4E+02 0.024 23.0 3.7 24 379-402 3-26 (220)
9 d2qqra1 b.34.9.1 (A:897-955) J 3.8 1.9E+02 0.014 20.9 1.6 22 412-433 14-42 (59)
10 d1mg7a1 d.14.1.6 (A:14-187) Ea 3.8 76 0.0055 27.2 -0.8 70 370-447 25-98 (174)
No 1
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=6.64 E-value=2.1e+02 Score=22.34 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=20.8
Q ss_pred CCCCceEEEEEEeeCchhhhhhchhhHHHHHHHhh
Q 011095 323 SDGEGMSLVLYFRVSETFEKEISVHFQDSIKRFVD 357 (494)
Q Consensus 323 ~DGeg~SlVlYF~l~e~~~kei~~~f~~ll~Rfl~ 357 (494)
+|.+.|++..+++++.+++.+ .+...+.+++.
T Consensus 16 p~~~~yni~~~~~i~g~ld~~---~l~~A~~~l~~ 47 (174)
T d1l5aa1 16 PHINLDTVAHSLRLTGPLDTT---LLLRALHLTVS 47 (174)
T ss_dssp TTSCCSEEEEEEEEESSCCHH---HHHHHHHHHHH
T ss_pred CCCCeeeccEEEEEcCCCCHH---HHHHHHHHHHH
Confidence 345669999999998766542 24445555554
No 2
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=53 Score=27.06 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCCCCCcccCCCCCCcceeEeeeeecCcccchhhcccCccccccCCCCCeEEEEEEEcCCCCCcCCCCCCCCceEEEEEE
Q 011095 255 YFRDKQKTPAPNYSPYVPIGVDLFACSRKINHIAQHLELPQVKTNEKVPSLLIVNIQLPTYPACMFGESDGEGMSLVLYF 334 (494)
Q Consensus 255 Yl~DKkKvpA~~~al~~lvgVDlF~s~~ki~hIA~~~~lp~~~~~~~~P~vfIVNiQlP~~P~~~Fg~~DGeg~SlVlYF 334 (494)
||.-|+|.-++.. ++-|+-++.=.+-.++..|-.+..+|+-. ...|.-|++-|+=+. |-|+||
T Consensus 56 yL~gr~~~~~~~q-v~iP~p~~~sls~~~i~~~~~~~~~p~~~--~~~~~s~tLai~d~D--------------STIvYY 118 (122)
T d2gw6a1 56 CLVGTEIEGEGLQ-TVVPTPITASLSHNRIREILKASRKLQGD--PDLPMSFTLAIVESD--------------STIVYY 118 (122)
T ss_dssp EEEEESSTTCCCC-EEEEEETTCEEEHHHHHHHHHHHHHHTTC--SSCCCEEEEEEECTT--------------SCEEEE
T ss_pred EEEcccccCCCcc-EEEeeccccccCHHHHHHHHHhccCCcCC--cCccceEEEEEEcCC--------------CeEEEE
Confidence 4545555544433 67777777666776776665544334322 234555666677666 667788
Q ss_pred eeC
Q 011095 335 RVS 337 (494)
Q Consensus 335 ~l~ 337 (494)
+++
T Consensus 119 rmt 121 (122)
T d2gw6a1 119 KLT 121 (122)
T ss_dssp EEE
T ss_pred Ecc
Confidence 875
No 3
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.72 E-value=1.1e+02 Score=25.49 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.0
Q ss_pred eeeeeCCCccccchHHHHHHHhhCCeee
Q 011095 381 MAGVVNPEDLHLSSTERKLMQAYNDKPV 408 (494)
Q Consensus 381 Ip~VVng~wl~L~~~~r~v~qavn~KPv 408 (494)
|+.|+||-- |.++..-+++.+|+||.
T Consensus 21 IG~i~NGAG--laMaTmD~i~~~Gg~pA 46 (148)
T d1eucb1 21 IACFVNGAG--LAMATCDIIFLNGGKPA 46 (148)
T ss_dssp EEEEESSHH--HHHHHHHHHHHTTCCBS
T ss_pred EEEEecCCc--cchhHHHHHHHcCCCee
Confidence 788999964 57777889999999998
No 4
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.59 E-value=1.5e+02 Score=24.61 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=21.5
Q ss_pred eeeeeCCCccccchHHHHHHHhhCCeee
Q 011095 381 MAGVVNPEDLHLSSTERKLMQAYNDKPV 408 (494)
Q Consensus 381 Ip~VVng~wl~L~~~~r~v~qavn~KPv 408 (494)
|+.++||-- |.++.--++..+|+||+
T Consensus 21 Ig~i~nGAG--lamaTmD~i~~~Gg~pA 46 (150)
T d2nu7b1 21 IGCMVNGAG--LAMGTMDIVKLHGGEPA 46 (150)
T ss_dssp EEEEESSHH--HHHHHHHHHHHTTCCBC
T ss_pred EEEEEcCCc--cchhhHHHHHHCCCCee
Confidence 788999964 56677778899999998
No 5
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.36 E-value=1.5e+02 Score=22.20 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=17.5
Q ss_pred eeEEeecCCCCCCccceeceeeec
Q 011095 454 LGLTIQAQKPEELPEQVLCCVRLN 477 (494)
Q Consensus 454 lGFvIEGqteeELPErLLG~vRL~ 477 (494)
+||++||..+.+-|+.+ .-|++
T Consensus 142 ~GF~~eg~~~~~~~~~~--~yr~~ 163 (164)
T d2fsra1 142 IGGTLDPLAPRSDPEDL--VYRYH 163 (164)
T ss_dssp TTCEECTTSCCSSTTCE--EEEEC
T ss_pred CCCEEeeeEcccCCCce--EEeeC
Confidence 69999999999888877 35554
No 6
>d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.29 E-value=1.4e+02 Score=26.17 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=20.2
Q ss_pred ccccccccccccceeeeeeeeccccccCCCcccccccc
Q 011095 65 ATTCKRSEVTNKNFHVTQMQWNHSQIDSNGICQEEAWY 102 (494)
Q Consensus 65 ~~~~~~~~~~~~~~h~tq~~~~~~q~d~~~~~~~~~w~ 102 (494)
.|.||.+ ..+|+|=|.||.. .+.+.-| +|.
T Consensus 163 GM~Ckp~----~s~~ikiLRW~C~-~~~~~~C---~W~ 192 (206)
T d1m4ua_ 163 GMVCKPS----KSVHLTVLRWRCQ-RRGGQRC---GWI 192 (206)
T ss_dssp CCEEEEE----EEEEEEEEEEEEC-SGGGCSE---EEE
T ss_pred CceEccC----CceEEEEEEEEec-cCCCCCc---eeE
Confidence 3566643 6899999999995 3444445 564
No 7
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.11 E-value=75 Score=24.61 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHhhCCeeeeec-------Cceeee---------eCCCEEEEEEeccC
Q 011095 398 KLMQAYNDKPVLSR-------PQHDFF---------KGPNYFEIDLDIHR 431 (494)
Q Consensus 398 ~v~qavn~KPvLir-------~q~~y~---------~G~nY~EIDVDIhs 431 (494)
.|...++..||++- |.|.|. .|-.|-|+|||-+.
T Consensus 7 ~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~ 56 (109)
T d1wika_ 7 GLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDE 56 (109)
T ss_dssp CHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCH
T ss_pred HHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccH
Confidence 36777788999873 457666 35689999988764
No 8
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=3.84 E-value=3.4e+02 Score=23.02 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=18.8
Q ss_pred eeeeeeeCCCccccchHHHHHHHh
Q 011095 379 KIMAGVVNPEDLHLSSTERKLMQA 402 (494)
Q Consensus 379 KLIp~VVng~wl~L~~~~r~v~qa 402 (494)
||.|.|...++++|......+.+.
T Consensus 3 kI~pSil~ad~~~l~~ei~~l~~~ 26 (220)
T d1h1ya_ 3 KIAPSMLSSDFANLAAEADRMVRL 26 (220)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHT
T ss_pred EEEhhhhhcCHHHHHHHHHHHHHc
Confidence 899999999999887665555443
No 9
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.79 E-value=1.9e+02 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=17.6
Q ss_pred CceeeeeC-------CCEEEEEEeccCch
Q 011095 412 PQHDFFKG-------PNYFEIDLDIHRFS 433 (494)
Q Consensus 412 ~q~~y~~G-------~nY~EIDVDIhsFS 433 (494)
...+||++ ..|+||..|=+|||
T Consensus 14 kNgryY~c~V~~~~~qtfyeV~FdDgS~s 42 (59)
T d2qqra1 14 KNGRFYQCEVVRLTTETFYEVNFDDGSFS 42 (59)
T ss_dssp TTSSEEEEEEEEEEEEEEEEEEETTSCEE
T ss_pred cCCcEEEEEEEEeeeEEEEEEEecCCCcc
Confidence 45678865 47999999999987
No 10
>d1mg7a1 d.14.1.6 (A:14-187) Early switch protein XOL-1, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=3.78 E-value=76 Score=27.24 Aligned_cols=70 Identities=21% Similarity=0.145 Sum_probs=38.0
Q ss_pred CChhhh-cceeeeeeeeCCCccccchHHHHHHHhhCCeeeeec--CceeeeeCCCEEEE-EEeccCchHHHHHHHHhhhc
Q 011095 370 STVPFR-ERLKIMAGVVNPEDLHLSSTERKLMQAYNDKPVLSR--PQHDFFKGPNYFEI-DLDIHRFSYISRKGFESFRN 445 (494)
Q Consensus 370 ~dd~fR-~RfKLIp~VVng~wl~L~~~~r~v~qavn~KPvLir--~q~~y~~G~nY~EI-DVDIhsFS~IAr~~l~lv~g 445 (494)
+|..|| +.+-.-|.||+--.. ..-|||.-.+..+ ..-+-.+..+=-+| +++-+.+.++.+.+++-+++
T Consensus 25 ~~~~~~~~~~~~APHvV~i~~~--------g~MAVNK~C~v~s~il~~r~pks~~eH~Idev~~~~hg~it~~iI~DlLe 96 (174)
T d1mg7a1 25 DDPNFRNSKLAAAPHTVHMMDS--------GFLAINRQCLVKGKAILAREPKSSNEHMIDDLPKHAHDQHTLSILRDFID 96 (174)
T ss_dssp -------CEEEEEEEEEEETTT--------EEEEEEEEEEEEEEEEESSCCSSGGGSEECCCCCCTTHHHHHHHHHHHHH
T ss_pred CCCCcccchhccCCeEEeeccc--------ceeeeeeeEEEeeeeccccCCCchhhhhHHHhhHhhhcceeHHHHHHHHH
Confidence 467899 689999999986543 3345664333221 11111111122567 67778888999988877776
Q ss_pred cc
Q 011095 446 RL 447 (494)
Q Consensus 446 ~~ 447 (494)
.+
T Consensus 97 ~m 98 (174)
T d1mg7a1 97 QL 98 (174)
T ss_dssp HH
T ss_pred Hh
Confidence 54
Done!