Query         011096
Match_columns 493
No_of_seqs    187 out of 2022
Neff          11.3
Searched_HMMs 46136
Date          Fri Mar 29 08:04:14 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011096hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0   3E-83 6.6E-88  603.1  47.0  439   37-488    25-488 (489)
  2 PLN03234 cytochrome P450 83B1; 100.0 1.2E-77 2.6E-82  586.8  48.3  448   35-487    25-498 (499)
  3 PLN02183 ferulate 5-hydroxylas 100.0 1.6E-77 3.4E-82  586.1  47.6  453   36-491    34-515 (516)
  4 PLN02971 tryptophan N-hydroxyl 100.0 3.3E-77 7.1E-82  585.6  47.5  449   34-489    53-535 (543)
  5 PLN02687 flavonoid 3'-monooxyg 100.0 5.3E-77 1.2E-81  582.5  48.4  455   29-488    25-509 (517)
  6 KOG0158 Cytochrome P450 CYP3/C 100.0 2.2E-77 4.7E-82  554.0  41.7  435   39-488    32-499 (499)
  7 PLN03112 cytochrome P450 famil 100.0 1.1E-75 2.3E-80  574.7  48.5  451   34-488    28-508 (514)
  8 PLN00110 flavonoid 3',5'-hydro 100.0 1.7E-75 3.7E-80  568.3  47.2  444   36-489    29-498 (504)
  9 PLN02966 cytochrome P450 83A1  100.0   9E-76   2E-80  572.3  45.4  447   34-485    25-497 (502)
 10 PLN00168 Cytochrome P450; Prov 100.0 5.9E-75 1.3E-79  568.4  48.3  463   23-489    20-518 (519)
 11 PTZ00404 cytochrome P450; Prov 100.0 3.4E-75 7.4E-80  567.0  43.3  431   35-487    26-482 (482)
 12 PLN02500 cytochrome P450 90B1  100.0   9E-75   2E-79  564.2  42.8  432   32-486    32-488 (490)
 13 PLN02394 trans-cinnamate 4-mon 100.0 3.1E-74 6.7E-79  563.3  46.5  448   35-489    27-503 (503)
 14 PLN02290 cytokinin trans-hydro 100.0 1.7E-74 3.8E-79  566.4  40.9  438   37-489    41-516 (516)
 15 KOG0157 Cytochrome P450 CYP4/C 100.0 2.1E-74 4.5E-79  555.5  38.2  438   36-488    33-496 (497)
 16 PLN02655 ent-kaurene oxidase   100.0 8.7E-73 1.9E-77  546.2  41.7  432   40-489     1-465 (466)
 17 PLN03018 homomethionine N-hydr 100.0 2.6E-71 5.7E-76  539.5  49.8  449   34-488    36-524 (534)
 18 PLN02774 brassinosteroid-6-oxi 100.0   3E-72 6.5E-77  542.0  38.9  421   37-486    30-462 (463)
 19 PLN02196 abscisic acid 8'-hydr 100.0 4.4E-71 9.6E-76  533.3  40.0  420   34-486    31-461 (463)
 20 PLN03195 fatty acid omega-hydr 100.0 5.1E-71 1.1E-75  541.3  40.2  436   40-488    32-516 (516)
 21 PLN03141 3-epi-6-deoxocathaste 100.0 1.1E-70 2.3E-75  530.1  39.5  432   34-489     3-451 (452)
 22 PLN02169 fatty acid (omega-1)- 100.0 2.6E-70 5.6E-75  530.8  42.0  429   40-487    33-499 (500)
 23 PLN02302 ent-kaurenoic acid ox 100.0 1.1E-69 2.4E-74  531.2  44.3  433   34-489    38-489 (490)
 24 PLN02738 carotene beta-ring hy 100.0 9.3E-70   2E-74  533.9  40.0  426   49-490   142-597 (633)
 25 KOG0159 Cytochrome P450 CYP11/ 100.0 7.8E-70 1.7E-74  491.3  34.4  435   38-488    50-518 (519)
 26 PF00067 p450:  Cytochrome P450 100.0 4.6E-71   1E-75  540.9  28.6  414   40-460     1-442 (463)
 27 PLN02987 Cytochrome P450, fami 100.0 4.5E-69 9.9E-74  517.1  40.4  426   36-488    28-469 (472)
 28 KOG0684 Cytochrome P450 [Secon 100.0 2.1E-68 4.6E-73  469.7  30.5  432   38-488    32-485 (486)
 29 PLN02936 epsilon-ring hydroxyl 100.0 8.8E-68 1.9E-72  513.4  38.0  434   40-489    14-483 (489)
 30 PLN02426 cytochrome P450, fami 100.0 1.5E-65 3.3E-70  496.5  39.9  419   46-489    49-501 (502)
 31 PLN02648 allene oxide synthase 100.0 4.2E-61   9E-66  458.0  26.8  407   34-460    13-464 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 1.1E-56 2.3E-61  423.3  31.2  355   60-458    24-387 (411)
 33 PF08492 SRP72:  SRP72 RNA-bind  72.3     2.3   5E-05   27.3   1.3    7  402-408    44-50  (59)
 34 PF12554 MOZART1:  Mitotic-spin  70.3      17 0.00038   22.3   4.6   42  280-321     6-47  (48)
 35 PF05952 ComX:  Bacillus compet  56.9      11 0.00024   24.0   2.2   18  303-320     5-22  (57)
 36 TIGR00847 ccoS cytochrome oxid  56.2      21 0.00046   22.2   3.3   26    1-26      1-26  (51)
 37 KOG3653 Transforming growth fa  52.0      79  0.0017   30.5   7.7   47   60-106   211-258 (534)
 38 PF01102 Glycophorin_A:  Glycop  44.2      38 0.00082   25.9   3.7   18   14-31     75-92  (122)
 39 PF10717 ODV-E18:  Occlusion-de  44.0      66  0.0014   22.3   4.4   23    6-28     24-46  (85)
 40 PF05393 Hum_adeno_E3A:  Human   43.6      52  0.0011   23.0   3.9   21    7-27     34-54  (94)
 41 PRK06789 flagellar motor switc  42.2      28 0.00061   23.8   2.5   40  345-384    21-62  (74)
 42 COG1759 5-formaminoimidazole-4  39.6      39 0.00085   30.5   3.6   70  342-444   275-351 (361)
 43 PF09201 SRX:  SRX;  InterPro:   38.8      28 0.00061   26.8   2.3   24  428-451    18-41  (148)
 44 PF07886 BA14K:  BA14K-like pro  38.3      27  0.0006   19.1   1.6   16  416-431    16-31  (31)
 45 PRK14857 tatA twin arginine tr  37.9      31 0.00068   24.6   2.3   14    1-14      1-14  (90)
 46 COG3197 FixS Uncharacterized p  36.5      53  0.0012   21.0   2.8   26    1-26      1-26  (58)
 47 PF11138 DUF2911:  Protein of u  36.3      45 0.00098   26.4   3.2   39  365-404    53-98  (145)
 48 PF12444 Sox_N:  Sox developmen  36.1      22 0.00048   24.9   1.3   19  439-457    61-79  (84)
 49 PF14129 DUF4296:  Domain of un  35.4 1.6E+02  0.0035   20.8   5.7   50  276-325    29-78  (87)
 50 COG0851 MinE Septum formation   34.9      82  0.0018   22.2   3.8   18  310-327    35-52  (88)
 51 PF12508 DUF3714:  Protein of u  34.2      33 0.00072   28.9   2.3   44  338-383    51-94  (200)
 52 PF15330 SIT:  SHP2-interacting  33.3   1E+02  0.0022   23.0   4.4   11   45-55     45-55  (107)
 53 COG2101 SPT15 TATA-box binding  32.7      16 0.00035   29.4   0.2   37  399-435    35-71  (185)
 54 PF03742 PetN:  PetN ;  InterPr  31.3      83  0.0018   16.8   2.6   12    1-12      1-12  (29)
 55 PF08569 Mo25:  Mo25-like;  Int  29.5 4.7E+02    0.01   24.4  11.1   41  304-356   116-157 (335)
 56 PHA03162 hypothetical protein;  27.9      54  0.0012   25.0   2.2   25  424-448     2-26  (135)
 57 PRK13664 hypothetical protein;  27.4 1.6E+02  0.0036   18.7   3.8    7   38-44     38-44  (62)
 58 PF14483 Cut8_M:  Cut8 dimerisa  25.9 1.3E+02  0.0027   17.5   3.0   13  307-319    23-35  (38)
 59 KOG3506 40S ribosomal protein   25.0      32  0.0007   21.5   0.5   11  421-431    12-22  (56)
 60 PF13625 Helicase_C_3:  Helicas  23.8 1.4E+02   0.003   23.0   4.1   39   60-100    76-114 (129)
 61 PRK05933 type III secretion sy  22.3      82  0.0018   28.5   2.7   43  342-384   317-362 (372)
 62 cd04516 TBP_eukaryotes eukaryo  22.1      60  0.0013   26.7   1.7   57  399-455    29-87  (174)
 63 PF10777 YlaC:  Inner membrane   21.2      56  0.0012   25.7   1.3   39  303-341   114-152 (155)
 64 PF09926 DUF2158:  Uncharacteri  21.0      99  0.0021   19.5   2.1   18   71-88      3-20  (53)
 65 cd04518 TBP_archaea archaeal T  20.5      32 0.00069   28.3  -0.1   36  399-434    29-64  (174)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=3e-83  Score=603.13  Aligned_cols=439  Identities=45%  Similarity=0.800  Sum_probs=377.7

Q ss_pred             CCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCC-Cchhhh
Q 011096           37 SNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPH-FPAAQI  115 (493)
Q Consensus        37 ~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~-~~~~~~  115 (493)
                      .+.||||+++|+|||++++....+++.+.++.++|||+|++++|..++|||+|++.+++++.+++..|+.|+. ......
T Consensus        25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~  104 (489)
T KOG0156|consen   25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY  104 (489)
T ss_pred             CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence            6889999999999999999433499999999999999999999999999999999999999999999999997 234466


Q ss_pred             hhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh-hCCCceeeHHHHHHHHHHHHhhhhc
Q 011096          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS-KAGSVINLTQNVHSLMYGITSRAAF  194 (493)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~vdl~~~~~~~~~~~~~~~~f  194 (493)
                      ..+++.+.+++.+|+.|+.+||..+..+++.+.++.......++++.+++.+.+ ..+++||+...+..++.+++++.+|
T Consensus       105 ~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~~~f  184 (489)
T KOG0156|consen  105 LSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICRMLF  184 (489)
T ss_pred             hcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHHHHh
Confidence            666778888888999999999999999999999998888888999999998885 2227899999999999999999999


Q ss_pred             CCCCccH-----HHHHHHHHHHHHHhcccChHh--------------H----HHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 011096          195 GNRSRDQ-----EAFVAVIEETTKVISGFNIAD--------------V----ETLHQEGVRIVENIINEHKKRKATLKNC  251 (493)
Q Consensus       195 G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--------------~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~  251 (493)
                      |.++...     .++...+.+...........+              .    .....++..++++.++++++.. ..   
T Consensus       185 G~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~~---  260 (489)
T KOG0156|consen  185 GRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-GD---  260 (489)
T ss_pred             CCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc---
Confidence            9998752     135566666555443221110              0    2233346777888888887765 11   


Q ss_pred             CCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCcc
Q 011096          252 KTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKV  331 (493)
Q Consensus       252 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~  331 (493)
                      +  ++.|+++.|++..++++... ++++++...+..+++||+|||++|+.|++.+|++||++|+|+++||++++|.++.+
T Consensus       261 ~--~~~D~vD~lL~~~~~~~~~~-~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v  337 (489)
T KOG0156|consen  261 E--EGRDFVDALLKLMKEEKAEG-LTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLV  337 (489)
T ss_pred             C--CCCcHHHHHHHhhcccccCC-CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCC
Confidence            1  23899999999876543222 99999999999999999999999999999999999999999999999999998889


Q ss_pred             ccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCC
Q 011096          332 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSV  411 (493)
Q Consensus       332 ~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~  411 (493)
                      +.+|+.+||||+|||+|++|++|++|+..||.+.+|+.++||.|||||.|+++.|++||||++|+||++|+||||++++ 
T Consensus       338 ~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-  416 (489)
T KOG0156|consen  338 SESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-  416 (489)
T ss_pred             ChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999974 


Q ss_pred             CCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccC
Q 011096          412 DYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  488 (493)
Q Consensus       412 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  488 (493)
                      +.+.....++|||.|+|+|||..+|++++..+++.|+++|||+++.+    ++++... +.++..+.++.+...+|.
T Consensus       417 d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~-~~~~~~~~pl~~~~~~r~  488 (489)
T KOG0156|consen  417 DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEA-GLTLKKKKPLKAVPVPRL  488 (489)
T ss_pred             cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCccc-ccceecCCcceeeeecCC
Confidence            22225678999999999999999999999999999999999999877    2455555 377788889998888875


No 2  
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=1.2e-77  Score=586.76  Aligned_cols=448  Identities=38%  Similarity=0.700  Sum_probs=364.0

Q ss_pred             CCCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhh
Q 011096           35 RISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (493)
Q Consensus        35 ~~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~  114 (493)
                      ++.+.||||+++|++||+..+...+++.++.+++++||++|++++++.++++++||+++++++.++...|..++......
T Consensus        25 ~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~  104 (499)
T PLN03234         25 KSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQ  104 (499)
T ss_pred             CCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhh
Confidence            34567899999999999988744468889999999999999999999999999999999999998877788777543332


Q ss_pred             hhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHHhhh
Q 011096          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRA  192 (493)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~~~~  192 (493)
                      .....+....+...++.|+.+||.++.++|+++.+..+.+.+.+.++++++.|..  ..++++|+.+.+..+++++++..
T Consensus       105 ~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~  184 (499)
T PLN03234        105 TMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQ  184 (499)
T ss_pred             hhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHH
Confidence            2222233334556688999999986678999999999999999999999999863  34678999999999999999999


Q ss_pred             hcCCCCccH----HHHHHHHHHHHHHhccc------Ch-----------HhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 011096          193 AFGNRSRDQ----EAFVAVIEETTKVISGF------NI-----------ADVETLHQEGVRIVENIINEHKKRKATLKNC  251 (493)
Q Consensus       193 ~fG~~~~~~----~~~~~~~~~~~~~~~~~------~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  251 (493)
                      +||.++...    .++.+.+..........      +.           ....++.+.+.++++++++++++.....   
T Consensus       185 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---  261 (499)
T PLN03234        185 AFGKRYNEYGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRPK---  261 (499)
T ss_pred             HhCCcccccchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---
Confidence            999987542    24444444333221100      00           1123455566666777776654332111   


Q ss_pred             CCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCcc
Q 011096          252 KTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKV  331 (493)
Q Consensus       252 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~  331 (493)
                        ...+|+++.|++..+++.....++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+++++++.+.+
T Consensus       262 --~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~  339 (499)
T PLN03234        262 --QETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYV  339 (499)
T ss_pred             --CCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCC
Confidence              135689999987654322223589999999999999999999999999999999999999999999999999877778


Q ss_pred             ccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCC-CCCCCcCccccccCC
Q 011096          332 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYW-TEPESFIPERFLDHS  410 (493)
Q Consensus       332 ~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~  410 (493)
                      +++++++|||++|||+|+||++|++++..+|.+.+|++++||.|||||.|+++.+.+||||++| +||++||||||+++.
T Consensus       340 ~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~  419 (499)
T PLN03234        340 SEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEH  419 (499)
T ss_pred             CHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCC
Confidence            9999999999999999999999999987679999999999999999999999999999999999 899999999999764


Q ss_pred             CC--CCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeecc
Q 011096          411 VD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPY  487 (493)
Q Consensus       411 ~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  487 (493)
                      ..  .+..+..++|||+|+|+|+|+++|++|++++++.|+++|+|+++++..+.++......++..+++.++.+.+++|
T Consensus       420 ~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (499)
T PLN03234        420 KGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH  498 (499)
T ss_pred             CCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence            32  123456899999999999999999999999999999999999987755555666667788788888999888876


No 3  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=1.6e-77  Score=586.13  Aligned_cols=453  Identities=38%  Similarity=0.732  Sum_probs=361.1

Q ss_pred             CCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhh
Q 011096           36 ISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI  115 (493)
Q Consensus        36 ~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~  115 (493)
                      +.+.||||+++|++|+++.+ ....+.++.+|+++||++|++++++.++|+|+||+++++++.++...|+.++.......
T Consensus        34 ~~~~ppgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~  112 (516)
T PLN02183         34 RLPYPPGPKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISY  112 (516)
T ss_pred             CCCCCcCCCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhc
Confidence            34678999999999999876 44567789999999999999999999999999999999999987777777765433222


Q ss_pred             hhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhhCCCceeeHHHHHHHHHHHHhhhhcC
Q 011096          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAAFG  195 (493)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG  195 (493)
                      ...++.+++++.+|+.|+++||.++.+.|+.+.++.+.+.. ++++.+++.|....++++|+.+++..++++++++++||
T Consensus       113 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~vi~~~~fG  191 (516)
T PLN02183        113 LTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVR-DEVDSMVRSVSSNIGKPVNIGELIFTLTRNITYRAAFG  191 (516)
T ss_pred             cccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHhHhhc
Confidence            22223466788899999999999668899999999888864 67889999886555778999999999999999999999


Q ss_pred             CCCccH-HHHHHHHHHHHHHhcc------cCh----------HhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--CCCCC
Q 011096          196 NRSRDQ-EAFVAVIEETTKVISG------FNI----------ADVETLHQEGVRIVENIINEHKKRKATLKNC--KTGDD  256 (493)
Q Consensus       196 ~~~~~~-~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~  256 (493)
                      .+.+.. +++.+.+..+...+..      .+.          ....+..+...+++.+++++++++.......  +....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (516)
T PLN02183        192 SSSNEGQDEFIKILQEFSKLFGAFNVADFIPWLGWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQNADNDSEEAE  271 (516)
T ss_pred             CcccchHHHHHHHHHHHHHHhCCccHHHhcchhHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence            876542 3455555544332111      000          1113345556666777777665443221110  11124


Q ss_pred             CcHHHHHHhhhccCC---------CCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcC
Q 011096          257 EDLVDVLLKIQGHGD---------LDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR  327 (493)
Q Consensus       257 ~~~~~~ll~~~~~~~---------~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~  327 (493)
                      .|+++.++++..++.         ....++++++++++.++++||+|||+++++|++++|++||++|+|+++|++++++.
T Consensus       272 ~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~  351 (516)
T PLN02183        272 TDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGL  351 (516)
T ss_pred             ccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCC
Confidence            689999998643211         11258999999999999999999999999999999999999999999999999986


Q ss_pred             CCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccc
Q 011096          328 TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFL  407 (493)
Q Consensus       328 ~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l  407 (493)
                      ++.++++++++||||+|||+||||++|++|+. .|.+.+|++++||.|||||.|.++.+++||||++|+||++|+||||+
T Consensus       352 ~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~-~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl  430 (516)
T PLN02183        352 NRRVEESDLEKLTYLKCTLKETLRLHPPIPLL-LHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFL  430 (516)
T ss_pred             CCCCCHHHhccChHHHHHHHHHhccCCCccce-eeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhC
Confidence            66789999999999999999999999999998 49999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeec
Q 011096          408 DHSVD-YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  486 (493)
Q Consensus       408 ~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      +++.. ...+...|+|||+|+|.|+|++||++|+++++|+|+++|+|++.++..+..++....++.+++++.++.+.+++
T Consensus       431 ~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (516)
T PLN02183        431 KPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTY  510 (516)
T ss_pred             CCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeec
Confidence            75432 12345689999999999999999999999999999999999997764333344444556666677799999999


Q ss_pred             cCCCC
Q 011096          487 YHPSS  491 (493)
Q Consensus       487 r~~~~  491 (493)
                      |-.++
T Consensus       511 r~~~~  515 (516)
T PLN02183        511 RLQCP  515 (516)
T ss_pred             CCCCC
Confidence            95543


No 4  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=3.3e-77  Score=585.64  Aligned_cols=449  Identities=26%  Similarity=0.493  Sum_probs=355.6

Q ss_pred             CCCCCCCCCCCCCCcccccccccCCC-CcchHHHHHhhcC-CeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCc
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLAGSL-PHHGLRDLSKKYG-PLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFP  111 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~~~~-~~~~~~~~~~kyG-~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~  111 (493)
                      +++.+.||||+++|++||++.+.... .+.++.+|.++|| +++++++|++++|+|+||+.+++++.++...|..++...
T Consensus        53 ~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~  132 (543)
T PLN02971         53 KKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY  132 (543)
T ss_pred             CCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc
Confidence            34557899999999999998774332 3567899999999 899999999999999999999999998888888887544


Q ss_pred             hhhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHH
Q 011096          112 AAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGIT  189 (493)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~  189 (493)
                      ....++.+..++++..+|+.|+++||.+...++++..+..+.+.+.++++.+++++.+  ..++++|+.+.+..++++++
T Consensus       133 ~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi  212 (543)
T PLN02971        133 AQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAI  212 (543)
T ss_pred             chhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHH
Confidence            3333333223457888899999999997677888877778888888888888888764  24567999999999999999


Q ss_pred             hhhhcCCCCcc------H---HHHHHHHHHHHHHhc---------ccCh-H-----h----HHHHHHHHHHHHHHHHHHH
Q 011096          190 SRAAFGNRSRD------Q---EAFVAVIEETTKVIS---------GFNI-A-----D----VETLHQEGVRIVENIINEH  241 (493)
Q Consensus       190 ~~~~fG~~~~~------~---~~~~~~~~~~~~~~~---------~~~~-~-----~----~~~~~~~~~~~~~~~i~~~  241 (493)
                      ++++||.+...      .   .++.+.+..+.....         .++. .     .    .....+.+.+++.++++++
T Consensus       213 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  292 (543)
T PLN02971        213 KRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRESSAIMDKYHDPIIDER  292 (543)
T ss_pred             HHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987521      1   122233333322110         0000 0     0    1122344566667777766


Q ss_pred             HHhhhhhccCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHH
Q 011096          242 KKRKATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEV  321 (493)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei  321 (493)
                      ++.......   ....|+++.|++..++++ ...++++++++++.++++||+|||+++++|++++|++||++|+|+++||
T Consensus       293 ~~~~~~~~~---~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI  368 (543)
T PLN02971        293 IKMWREGKR---TQIEDFLDIFISIKDEAG-QPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEI  368 (543)
T ss_pred             HHHHhccCC---CCCcCHHHHHHhhhcccC-CCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            543321111   124699999998653221 1248999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCc
Q 011096          322 REVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESF  401 (493)
Q Consensus       322 ~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F  401 (493)
                      ++++++++.++++++.+|||++|||+|+||++|+++...+|.+.+|++++||.|||||.|++++|++||||++|+||++|
T Consensus       369 ~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F  448 (543)
T PLN02971        369 DRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSF  448 (543)
T ss_pred             HHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCcccc
Confidence            99998877899999999999999999999999999987789999999999999999999999999999999999999999


Q ss_pred             CccccccCCCC--CCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCc
Q 011096          402 IPERFLDHSVD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQD  479 (493)
Q Consensus       402 ~P~R~l~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (493)
                      +||||+++...  ....+..|+|||+|+|.|+|++||+.|++++++.|+++|+|++.++.+  .+++.+.++ ++..+.+
T Consensus       449 ~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~-~~~~~~~  525 (543)
T PLN02971        449 KPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSET--RVELMESSH-DMFLSKP  525 (543)
T ss_pred             CcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCC--CcchhhhcC-ccccccc
Confidence            99999975422  112456799999999999999999999999999999999999876542  355655566 6656668


Q ss_pred             eeEEeeccCC
Q 011096          480 LCMTPIPYHP  489 (493)
Q Consensus       480 ~~~~~~~r~~  489 (493)
                      +.+.+.||.+
T Consensus       526 ~~~~~~~~~~  535 (543)
T PLN02971        526 LVMVGELRLS  535 (543)
T ss_pred             ceeeeeecCC
Confidence            9999999844


No 5  
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=5.3e-77  Score=582.53  Aligned_cols=455  Identities=39%  Similarity=0.727  Sum_probs=367.8

Q ss_pred             hccccCCCCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCC
Q 011096           29 RSQTNNRISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRP  108 (493)
Q Consensus        29 ~~~~~~~~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~  108 (493)
                      +.+.+.+..+.||||.++|++||++.+ ..+++.++.+|+++||++|++++++.++++++||+++++++.++...|.+++
T Consensus        25 ~~~~~~~~~~~pPgp~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~  103 (517)
T PLN02687         25 RGGSGKHKRPLPPGPRGWPVLGNLPQL-GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRP  103 (517)
T ss_pred             cccCCCCCCCCCccCCCCCccccHHhc-CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCC
Confidence            333334455678999999999999887 5678899999999999999999999999999999999999998777788776


Q ss_pred             CCchhhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh-hCCCceeeHHHHHHHHHH
Q 011096          109 HFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS-KAGSVINLTQNVHSLMYG  187 (493)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~vdl~~~~~~~~~~  187 (493)
                      .......+...+.+.+++.+|+.|+++||.+..+.|+.+.++.+.+.+.+++.++++.|.+ ..++++|+.+.+..+++|
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t~d  183 (517)
T PLN02687        104 PNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCTTN  183 (517)
T ss_pred             CccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHH
Confidence            5443333333345677888899999999995448899999999999999999999999874 245689999999999999


Q ss_pred             HHhhhhcCCCCcc------HHHHHHHHHHHHHHhccc------C------h----HhHHHHHHHHHHHHHHHHHHHHHhh
Q 011096          188 ITSRAAFGNRSRD------QEAFVAVIEETTKVISGF------N------I----ADVETLHQEGVRIVENIINEHKKRK  245 (493)
Q Consensus       188 ~~~~~~fG~~~~~------~~~~~~~~~~~~~~~~~~------~------~----~~~~~~~~~~~~~~~~~i~~~~~~~  245 (493)
                      +++..+||.++..      .+++.+.+..+.......      +      .    ....+..+.+.+++.++++++++..
T Consensus       184 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~  263 (517)
T PLN02687        184 ALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDLQGVVGKMKRLHRRFDAMMNGIIEEHKAAG  263 (517)
T ss_pred             HHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999987521      234555555544322111      0      0    0123344556666777777766543


Q ss_pred             hhhccCCCCCCCcHHHHHHhhhccC---CCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHH
Q 011096          246 ATLKNCKTGDDEDLVDVLLKIQGHG---DLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVR  322 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~  322 (493)
                      ...    .....|+++.+++..++.   .....++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++
T Consensus       264 ~~~----~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~  339 (517)
T PLN02687        264 QTG----SEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELD  339 (517)
T ss_pred             ccc----CcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            211    113579999999875431   1123589999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcC
Q 011096          323 EVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFI  402 (493)
Q Consensus       323 ~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~  402 (493)
                      ++.++++.++++++++||||+|||+||||++|+++...+|.+.+|++++|+.||+||.|.++.+.+||||++|+||++|+
T Consensus       340 ~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~  419 (517)
T PLN02687        340 AVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFR  419 (517)
T ss_pred             HHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCC
Confidence            99987778899999999999999999999999999866899999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCC----CCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCC
Q 011096          403 PERFLDHSVDY----KGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQ  478 (493)
Q Consensus       403 P~R~l~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (493)
                      ||||+++....    ...+..++|||+|+|.|+|++||++|+++++++|+++|+|++.++..+.+++.......++.+..
T Consensus       420 PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (517)
T PLN02687        420 PDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAV  499 (517)
T ss_pred             chhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCC
Confidence            99999753211    12356799999999999999999999999999999999999987644334444445566667888


Q ss_pred             ceeEEeeccC
Q 011096          479 DLCMTPIPYH  488 (493)
Q Consensus       479 ~~~~~~~~r~  488 (493)
                      ++.++++||.
T Consensus       500 ~~~~~~~~R~  509 (517)
T PLN02687        500 PLMVHPRPRL  509 (517)
T ss_pred             CeEEeeccCC
Confidence            9999999984


No 6  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.2e-77  Score=554.03  Aligned_cols=435  Identities=29%  Similarity=0.454  Sum_probs=347.9

Q ss_pred             CCCCCCCCCcccccccccCC-CCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCC--CCchhhh
Q 011096           39 PPPGPWKLPVIGNLYQLAGS-LPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRP--HFPAAQI  115 (493)
Q Consensus        39 ~ppgp~~~p~iG~~~~~~~~-~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~--~~~~~~~  115 (493)
                      -.|+|+++|++||+..+... .+.....+...+||+++.+..+.+|.++|+||+++++|+.+....|.++.  .......
T Consensus        32 Gi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~~  111 (499)
T KOG0158|consen   32 GIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPED  111 (499)
T ss_pred             CCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCCC
Confidence            56788889999999887532 22333444444449999999999999999999999999999888888843  2222211


Q ss_pred             hhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhhCC--CceeeHHHHHHHHHHHHhhhh
Q 011096          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAG--SVINLTQNVHSLMYGITSRAA  193 (493)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~--~~vdl~~~~~~~~~~~~~~~~  193 (493)
                        ......++...|+.|+++|.. ++|.|+...++.+.+.+.+.+.++++.+.+...  ..+++.+.+.+++.|+|++++
T Consensus       112 --~l~~~~Lf~~~g~~WK~lR~~-lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~A  188 (499)
T KOG0158|consen  112 --PLSALNLFFLRGERWKRLRTK-LSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCA  188 (499)
T ss_pred             --cccccCchhccCchHHHHHHh-hccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhh
Confidence              113356788899999999999 799999999999999999999999999985433  478899999999999999999


Q ss_pred             cCCCCccH----HHHHHHHHHHHHH-hcccCh--------HhH----------HHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 011096          194 FGNRSRDQ----EAFVAVIEETTKV-ISGFNI--------ADV----------ETLHQEGVRIVENIINEHKKRKATLKN  250 (493)
Q Consensus       194 fG~~~~~~----~~~~~~~~~~~~~-~~~~~~--------~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~~  250 (493)
                      ||.+.+..    .+|.......... ......        +.+          ....+...+.+...++.|..    .. 
T Consensus       189 fG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~~~~~~~~~~~~~~~~v~~~v~~R~~----~~-  263 (499)
T KOG0158|consen  189 FGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLRVKLFPEDVTDFFRKLVNSRVEQREK----EN-  263 (499)
T ss_pred             cccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhhcccChHHHHHHHHHHHHHHHHHHHh----cC-
Confidence            99987542    2444433333332 111110        000          23334444455555555411    11 


Q ss_pred             CCCCCCCcHHHHHHhhhcc---CCCCC-cccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhc
Q 011096          251 CKTGDDEDLVDVLLKIQGH---GDLDS-FLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH  326 (493)
Q Consensus       251 ~~~~~~~~~~~~ll~~~~~---~~~~~-~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~  326 (493)
                         ....|+++.|+++...   +.... .+|.+++++++..|++||.||||+|+++++|+||+||++|+|||+||+++..
T Consensus       264 ---~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~  340 (499)
T KOG0158|consen  264 ---IERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLE  340 (499)
T ss_pred             ---CCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Confidence               2678999999998753   11112 5999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEc-ceecCCCCEEEeehhhhccCCCCCCCCCCcCccc
Q 011096          327 RTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQIN-GFDIPVKARVIVNAWAIGRDPEYWTEPESFIPER  405 (493)
Q Consensus       327 ~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~-g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R  405 (493)
                      +...+++|.+.+|+||++||+||||+||+++.. .|.|++|++++ ++.||||+.|.++++++||||++||||++|+|||
T Consensus       341 ~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~-~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PER  419 (499)
T KOG0158|consen  341 EKEGLTYDSLSKLKYLDMVIKETLRLYPPAPFL-NRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPER  419 (499)
T ss_pred             ccCCCCHHHHhCCcHHHHHHHHHHhhCCCcccc-cceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCcc
Confidence            665599999999999999999999999999996 69999999999 9999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEee
Q 011096          406 FLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPI  485 (493)
Q Consensus       406 ~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (493)
                      |.+++.+ ..++..|+|||.|||.|+|.+||.+|+|+.|++||++|+++..+... .. ......+.++.|+.+++++..
T Consensus       420 F~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~-~~-~~~~~~~~~l~pk~gi~Lkl~  496 (499)
T KOG0158|consen  420 FEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTI-IP-LEGDPKGFTLSPKGGIWLKLE  496 (499)
T ss_pred             CCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCccc-Cc-ccCCccceeeecCCceEEEEE
Confidence            9987654 44678999999999999999999999999999999999999987322 22 222223667899999999999


Q ss_pred             ccC
Q 011096          486 PYH  488 (493)
Q Consensus       486 ~r~  488 (493)
                      +|.
T Consensus       497 ~r~  499 (499)
T KOG0158|consen  497 PRD  499 (499)
T ss_pred             eCC
Confidence            984


No 7  
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=1.1e-75  Score=574.67  Aligned_cols=451  Identities=36%  Similarity=0.674  Sum_probs=363.8

Q ss_pred             CCCCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchh
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAA  113 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~  113 (493)
                      +++.+.||||+++|++||+..+ ..+++.++.+++++||++|++++++.++++++||+.+++++.++...|++++.....
T Consensus        28 ~~~~~~ppgp~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~  106 (514)
T PLN03112         28 RKSLRLPPGPPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAA  106 (514)
T ss_pred             cCCCCCccCCCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccc
Confidence            4455788999999999999887 567889999999999999999999999999999999999998887788877654322


Q ss_pred             hhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHHhh
Q 011096          114 QILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSR  191 (493)
Q Consensus       114 ~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~~~  191 (493)
                      .....+....++..+|+.|+.+||.++.+.|+.+.++.+.+.+.+.++.+++.+.+  ..++++|+.+.+..++++++++
T Consensus       107 ~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~  186 (514)
T PLN03112        107 VHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTR  186 (514)
T ss_pred             eeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHH
Confidence            22222233456777899999999997778899999999999999999999987653  2457899999999999999999


Q ss_pred             hhcCCCCcc--------HHHHHHHHHHHHHHhcc------cCh----------HhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011096          192 AAFGNRSRD--------QEAFVAVIEETTKVISG------FNI----------ADVETLHQEGVRIVENIINEHKKRKAT  247 (493)
Q Consensus       192 ~~fG~~~~~--------~~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~  247 (493)
                      ++||.++..        ..++...+..+......      .+.          ....+..+....++++.++++++....
T Consensus       187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  266 (514)
T PLN03112        187 MLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLDPYGCEKKMREVEKRVDEFHDKIIDEHRRARSG  266 (514)
T ss_pred             HHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999987521        12455555444332110      000          112334555666777777776654322


Q ss_pred             hccCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcC
Q 011096          248 LKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR  327 (493)
Q Consensus       248 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~  327 (493)
                      ...  .....|+++.++++..+++ ...++++++.+++.++++||+|||+++++|++++|++||++|+|+++||++++++
T Consensus       267 ~~~--~~~~~d~l~~ll~~~~~~~-~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~  343 (514)
T PLN03112        267 KLP--GGKDMDFVDVLLSLPGENG-KEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGR  343 (514)
T ss_pred             ccc--CCccchHHHHHHHhhcccc-ccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCC
Confidence            111  1134689999998653321 2348999999999999999999999999999999999999999999999999987


Q ss_pred             CCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccc
Q 011096          328 TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFL  407 (493)
Q Consensus       328 ~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l  407 (493)
                      ++.++++++++|||++|||+||||++|++++..+|.+.+|++++|+.|||||.|.++.+.+||||++|+||++|+||||+
T Consensus       344 ~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~  423 (514)
T PLN03112        344 NRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHW  423 (514)
T ss_pred             CCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccC
Confidence            77889999999999999999999999999986679999999999999999999999999999999999999999999987


Q ss_pred             cCCCC----CCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEE
Q 011096          408 DHSVD----YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMT  483 (493)
Q Consensus       408 ~~~~~----~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (493)
                      ++.+.    ....+..|+|||+|+|.|+|++||++|++++++.|+++|+|++.++....++......+.++++++++.++
T Consensus       424 ~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (514)
T PLN03112        424 PAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAV  503 (514)
T ss_pred             CCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEE
Confidence            64321    11234579999999999999999999999999999999999987654334455556667777889999999


Q ss_pred             eeccC
Q 011096          484 PIPYH  488 (493)
Q Consensus       484 ~~~r~  488 (493)
                      ++||-
T Consensus       504 ~~~r~  508 (514)
T PLN03112        504 ATPRL  508 (514)
T ss_pred             eecCC
Confidence            99994


No 8  
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=1.7e-75  Score=568.29  Aligned_cols=444  Identities=34%  Similarity=0.686  Sum_probs=358.7

Q ss_pred             CCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhh
Q 011096           36 ISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI  115 (493)
Q Consensus        36 ~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~  115 (493)
                      ..+.||||+++|++|+++.+ ..+++.++.+++++||++|++++++.++|+|+||+++++++.++...|+.++.......
T Consensus        29 ~~~~pPgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~  107 (504)
T PLN00110         29 SRKLPPGPRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATH  107 (504)
T ss_pred             cCCCcccCCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhh
Confidence            34678999999999998877 55678899999999999999999999999999999999999987777887765433222


Q ss_pred             hhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHHhhhh
Q 011096          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRAA  193 (493)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~~~~~  193 (493)
                      ...++.+++++.+|+.|+++|+.+....|+++.++.+.+.+.+++..+++.+.+  ..++++|+.+++..++.++++..+
T Consensus       108 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~  187 (504)
T PLN00110        108 LAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVI  187 (504)
T ss_pred             hccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHH
Confidence            223345677888899999999996556899999999999998999888888764  346789999999999999999999


Q ss_pred             cCCCCc-----cHHHHHHHHHHHHHHhccc------Ch----------HhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011096          194 FGNRSR-----DQEAFVAVIEETTKVISGF------NI----------ADVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (493)
Q Consensus       194 fG~~~~-----~~~~~~~~~~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (493)
                      ||.+..     +.+++.+.+..........      +.          ....+..+.+.+++.+.++++++.....    
T Consensus       188 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  263 (504)
T PLN00110        188 LSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMDIQGIERGMKHLHKKFDKLLTRMIEEHTASAHER----  263 (504)
T ss_pred             hCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----
Confidence            998751     1235666555544322110      10          0012234445556666666655432111    


Q ss_pred             CCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCccc
Q 011096          253 TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKVN  332 (493)
Q Consensus       253 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~  332 (493)
                       ....|+++.+++..+.. ....++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+++++++.+.++
T Consensus       264 -~~~~d~l~~ll~~~~~~-~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~  341 (504)
T PLN00110        264 -KGNPDFLDVVMANQENS-TGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLV  341 (504)
T ss_pred             -ccCCChhhHHhhccccc-CCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Confidence             13468999999764321 1235899999999999999999999999999999999999999999999999998777789


Q ss_pred             cccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCC
Q 011096          333 ETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVD  412 (493)
Q Consensus       333 ~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~  412 (493)
                      ++++++|||++|||+||||++|+++...+|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||+++...
T Consensus       342 ~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~  421 (504)
T PLN00110        342 ESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNA  421 (504)
T ss_pred             HHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCc
Confidence            99999999999999999999999998668999999999999999999999999999999999999999999999975432


Q ss_pred             CC---CCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccCC
Q 011096          413 YK---GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  489 (493)
Q Consensus       413 ~~---~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  489 (493)
                      ..   .....++|||+|+|.|+|++||++|++++++.|+++|||++.++.+   ++.....+.++.|+.++.+++++|..
T Consensus       422 ~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~  498 (504)
T PLN00110        422 KIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVE---LNMDEAFGLALQKAVPLSAMVTPRLH  498 (504)
T ss_pred             ccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCc---cCcccccccccccCCCceEeeccCCC
Confidence            11   1235799999999999999999999999999999999999876532   33333456778899999999999954


No 9  
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=9e-76  Score=572.35  Aligned_cols=447  Identities=38%  Similarity=0.720  Sum_probs=350.1

Q ss_pred             CCCCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchh
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAA  113 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~  113 (493)
                      ++..+.||||+++|++||++.+...+++.++.+|+++||++|++++++.++++++||+.+++++.++...|.+++.....
T Consensus        25 ~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~  104 (502)
T PLN02966         25 TKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGH  104 (502)
T ss_pred             cCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccc
Confidence            33456789999999999998875557889999999999999999999999999999999999999877667665543322


Q ss_pred             hhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHHhh
Q 011096          114 QILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSR  191 (493)
Q Consensus       114 ~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~~~  191 (493)
                      .....+..+..+..+|+.|+.+|+.++.+.|++..+..+.+.+.+.++++++.|.+  ..++.+|+.+++..+++++++.
T Consensus       105 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~  184 (502)
T PLN02966        105 EFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCR  184 (502)
T ss_pred             eeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHH
Confidence            22222223344566799999999997789999999999999999999999999974  3456799999999999999999


Q ss_pred             hhcCCCCccH----HHHHHHHHHHHHHhcc------cCh-------HhH----HHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 011096          192 AAFGNRSRDQ----EAFVAVIEETTKVISG------FNI-------ADV----ETLHQEGVRIVENIINEHKKRKATLKN  250 (493)
Q Consensus       192 ~~fG~~~~~~----~~~~~~~~~~~~~~~~------~~~-------~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~  250 (493)
                      ++||.+++..    .++.+.+.........      ++.       ..+    ....+...+++++.+++..+....   
T Consensus       185 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  261 (502)
T PLN02966        185 QAFGKKYNEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRV---  261 (502)
T ss_pred             HHhCCccCccchHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhcccc---
Confidence            9999987532    2333333332221111      010       000    122333445555555544321110   


Q ss_pred             CCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCC--
Q 011096          251 CKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT--  328 (493)
Q Consensus       251 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~--  328 (493)
                        .....++++.|++..+++.....++++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++++++  
T Consensus       262 --~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~  339 (502)
T PLN02966        262 --KPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGS  339 (502)
T ss_pred             --ccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCC
Confidence              1134689999997765432224589999999999999999999999999999999999999999999999998743  


Q ss_pred             CccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCC-CCCCCcCccccc
Q 011096          329 GKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYW-TEPESFIPERFL  407 (493)
Q Consensus       329 ~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l  407 (493)
                      +.++++++++||||+|||+|+||++|+++...+|.+.+|++++||.||+||.|.++++.+||||++| |+|++|+||||+
T Consensus       340 ~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl  419 (502)
T PLN02966        340 TFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFL  419 (502)
T ss_pred             CcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhc
Confidence            3578999999999999999999999999987679999999999999999999999999999999999 999999999999


Q ss_pred             cCCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEee
Q 011096          408 DHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPI  485 (493)
Q Consensus       408 ~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (493)
                      ++.......+..|+|||+|+|+|+|++||++|++++++.|+++|+|++.++.+++.++.....+....++..+.+..+
T Consensus       420 ~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (502)
T PLN02966        420 EKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPE  497 (502)
T ss_pred             CCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEE
Confidence            754322234568999999999999999999999999999999999999877654445555556665544445544433


No 10 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=5.9e-75  Score=568.40  Aligned_cols=463  Identities=27%  Similarity=0.462  Sum_probs=360.2

Q ss_pred             HHHHHhhccccCCCCCCCCCCCCCCccccccccc--CCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhc
Q 011096           23 VLKLEKRSQTNNRISNPPPGPWKLPVIGNLYQLA--GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTH  100 (493)
Q Consensus        23 ~~~~~~~~~~~~~~~~~ppgp~~~p~iG~~~~~~--~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~  100 (493)
                      ++.+.......++..++||||+++|++||+..+.  ..+++..+.+|+++||++|++++++.++++|+||+++++++.++
T Consensus        20 ~~~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~   99 (519)
T PLN00168         20 LLLGKHGGRGGKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVER   99 (519)
T ss_pred             HhhhhhhccCCCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhc
Confidence            3333445555556667899999999999987652  23467789999999999999999999999999999999999988


Q ss_pred             CcccCCCCCCchhhhhhcCCceeEe-ccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhh--CCCceee
Q 011096          101 DVVFASRPHFPAAQILSYNYRDIIF-SSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK--AGSVINL  177 (493)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--~~~~vdl  177 (493)
                      ...|+.++........+. +.+.+. ..+|+.|+++||.++.+.|+++.++.+.+.+.+.++.+++.|.+.  .++.+|+
T Consensus       100 ~~~f~~rp~~~~~~~~~~-~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~  178 (519)
T PLN00168        100 GAALADRPAVASSRLLGE-SDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRV  178 (519)
T ss_pred             CCccccCCcccchhhhcc-CCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCH
Confidence            777877765433333221 112232 368999999998668999999999999999999999999999753  2356899


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCccH--HHHHHHHHHHHHHh-------cccC-h---------HhHHHHHHHHHHHHHHHH
Q 011096          178 TQNVHSLMYGITSRAAFGNRSRDQ--EAFVAVIEETTKVI-------SGFN-I---------ADVETLHQEGVRIVENII  238 (493)
Q Consensus       178 ~~~~~~~~~~~~~~~~fG~~~~~~--~~~~~~~~~~~~~~-------~~~~-~---------~~~~~~~~~~~~~~~~~i  238 (493)
                      .+.+..++.++++.++||.++++.  +.+......+....       ..++ .         ....+..+.+.+++..++
T Consensus       179 ~~~~~~~~~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  258 (519)
T PLN00168        179 VETFQYAMFCLLVLMCFGERLDEPAVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQKALALRRRQKELFVPLI  258 (519)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987542  12222222221101       0000 0         011235566777778888


Q ss_pred             HHHHHhhhhhc----cCC--CCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcH
Q 011096          239 NEHKKRKATLK----NCK--TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPR  312 (493)
Q Consensus       239 ~~~~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~  312 (493)
                      +++++......    ..+  .....|+++.|++.....+.+..++++++++++.++++||+|||+++++|++++|++||+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~  338 (519)
T PLN00168        259 DARREYKNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPS  338 (519)
T ss_pred             HHHHHHhhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHH
Confidence            87765432110    000  011458999999765322222359999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCC-CccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccC
Q 011096          313 VMKKAQAEVREVFHRT-GKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRD  391 (493)
Q Consensus       313 ~~~~l~~Ei~~~~~~~-~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d  391 (493)
                      +|+|+++||+++++++ +.++++++++||||+|||+||||++|+++...+|.+.+|++++||.|||||.|+++.+.+|||
T Consensus       339 ~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d  418 (519)
T PLN00168        339 IQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRD  418 (519)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcC
Confidence            9999999999999753 568999999999999999999999999998878999999999999999999999999999999


Q ss_pred             CCCCCCCCCcCccccccCCCC-----CCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCc
Q 011096          392 PEYWTEPESFIPERFLDHSVD-----YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDM  466 (493)
Q Consensus       392 ~~~~~~p~~F~P~R~l~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~  466 (493)
                      |++||||++|+||||+++...     ....+..|+|||+|+|+|+|++||++|++++++.|+++|+|++.++..   ++.
T Consensus       419 ~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~  495 (519)
T PLN00168        419 EREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDE---VDF  495 (519)
T ss_pred             ccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCc---CCh
Confidence            999999999999999974321     112345799999999999999999999999999999999999976532   233


Q ss_pred             ccccCeeeccCCceeEEeeccCC
Q 011096          467 TEAFGVTVRRKQDLCMTPIPYHP  489 (493)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~r~~  489 (493)
                      ....+.++.++.++.+++++|..
T Consensus       496 ~~~~~~~~~~~~~~~~~~~~R~~  518 (519)
T PLN00168        496 AEKREFTTVMAKPLRARLVPRRT  518 (519)
T ss_pred             hhhceeEEeecCCcEEEEEeccC
Confidence            22334566777889999999864


No 11 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=3.4e-75  Score=567.00  Aligned_cols=431  Identities=26%  Similarity=0.462  Sum_probs=342.4

Q ss_pred             CCCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhh
Q 011096           35 RISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (493)
Q Consensus        35 ~~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~  114 (493)
                      ...+.+|||+++|++||+..+ ..+++..+.+++++||++|++++++.++|+++||+.+++++.++...|..++......
T Consensus        26 ~~~~~~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~  104 (482)
T PTZ00404         26 IHKNELKGPIPIPILGNLHQL-GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK  104 (482)
T ss_pred             ccCCCCCCCCCCCeeccHhhh-cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence            345678999999999999887 5578899999999999999999999999999999999999987766676665443221


Q ss_pred             hhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHHhhh
Q 011096          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRA  192 (493)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~~~~  192 (493)
                      ... .+ .+++..+|+.|+++|+. +.+.|++..+..+.+.+.+.+..+++.|.+  ..++.+|+.+++..+++|+++.+
T Consensus       105 ~~~-~~-~~l~~~~g~~w~~~Rk~-~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~  181 (482)
T PTZ00404        105 HGT-FY-HGIVTSSGEYWKRNREI-VGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKY  181 (482)
T ss_pred             eec-cC-CceeccChHHHHHHHHH-HHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHH
Confidence            111 12 34667799999999999 689999999999999999999999998864  34667999999999999999999


Q ss_pred             hcCCCCccH--------HHHHHHHHHHHHHhcccCh-------H----h----HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011096          193 AFGNRSRDQ--------EAFVAVIEETTKVISGFNI-------A----D----VETLHQEGVRIVENIINEHKKRKATLK  249 (493)
Q Consensus       193 ~fG~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~----~----~~~~~~~~~~~~~~~i~~~~~~~~~~~  249 (493)
                      +||.+....        ..+.+.+..++........       .    .    ..+..+.+.+++++.+++++++..   
T Consensus       182 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---  258 (482)
T PTZ00404        182 IFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPLYYQYLEHTDKNFKKIKKFIKEKYHEHLKTID---  258 (482)
T ss_pred             HhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---
Confidence            999876421        2445555444432211000       0    0    112233334444444433332211   


Q ss_pred             cCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCC
Q 011096          250 NCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTG  329 (493)
Q Consensus       250 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~  329 (493)
                         .....|+++.|+++..+.   .....+++++++.++++||+|||+++++|++++|++||++|+|+++||++++++++
T Consensus       259 ---~~~~~dll~~ll~~~~~~---~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~  332 (482)
T PTZ00404        259 ---PEVPRDLLDLLIKEYGTN---TDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRN  332 (482)
T ss_pred             ---CCCcccHHHHHHHHhccC---CcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCC
Confidence               113568999999864321   11233458899999999999999999999999999999999999999999998767


Q ss_pred             ccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeE-cceecCCCCEEEeehhhhccCCCCCCCCCCcCcccccc
Q 011096          330 KVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLD  408 (493)
Q Consensus       330 ~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~  408 (493)
                      .++++++++||||+|||+||||++|+++...+|.+.+|+++ +|+.|||||.|.++.+++||||++||||++|+||||++
T Consensus       333 ~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~  412 (482)
T PTZ00404        333 KVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLN  412 (482)
T ss_pred             CCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCC
Confidence            78999999999999999999999999997668999999999 99999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeecc
Q 011096          409 HSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPY  487 (493)
Q Consensus       409 ~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  487 (493)
                      +.     .+..|+|||+|+|.|+|++||++|++++++.|+++|+|++.++.+   +......+.+++ +.++.+++++|
T Consensus       413 ~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~-~~~~~v~~~~R  482 (482)
T PTZ00404        413 PD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKK---IDETEEYGLTLK-PNKFKVLLEKR  482 (482)
T ss_pred             CC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCC---CCcccccceeec-CCCceeeeecC
Confidence            52     346899999999999999999999999999999999999876532   222334556666 67899998887


No 12 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=9e-75  Score=564.16  Aligned_cols=432  Identities=19%  Similarity=0.304  Sum_probs=336.3

Q ss_pred             ccCCCCCCCCCCCCCCcccccccccC----CCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCC
Q 011096           32 TNNRISNPPPGPWKLPVIGNLYQLAG----SLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASR  107 (493)
Q Consensus        32 ~~~~~~~~ppgp~~~p~iG~~~~~~~----~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~  107 (493)
                      ..+++.+.||||+++|++||++.+..    ..++.++.+++++||++|+++++++++|+|+||+++++++.++...|+.+
T Consensus        32 ~~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~  111 (490)
T PLN02500         32 PKQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECS  111 (490)
T ss_pred             cccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEee
Confidence            33455678999999999999865422    34566789999999999999999999999999999999999876666543


Q ss_pred             CCCchhhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhh-cHHHHHHHHHHHHHHHHhhCCCceeeHHHHHHHHH
Q 011096          108 PHFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS-FQSIREAEVSDLINWISSKAGSVINLTQNVHSLMY  186 (493)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~  186 (493)
                      ........+   +...++..+|+.|+.+|+. +.+.|++..++. +.+.+.+.+..+++.|..  ++.+|+.+.+..+++
T Consensus       112 ~~~~~~~~~---g~~~~~~~~g~~wr~~Rk~-~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~vd~~~~~~~~~~  185 (490)
T PLN02500        112 YPRSIGGIL---GKWSMLVLVGDMHRDMRSI-SLNFLSHARLRTHLLKEVERHTLLVLDSWKE--NSTFSAQDEAKKFTF  185 (490)
T ss_pred             CchHHHHHh---CcccccccCCHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEehHHHHHHHH
Confidence            221111222   2234556689999999999 468899888876 466777777777777753  457999999999999


Q ss_pred             HHHhhhhcCCCCccH--HHHHHHHHHHHHHhc----ccC---hHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 011096          187 GITSRAAFGNRSRDQ--EAFVAVIEETTKVIS----GFN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDE  257 (493)
Q Consensus       187 ~~~~~~~fG~~~~~~--~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  257 (493)
                      +++++++||.+.++.  +++...+..+.....    .++   .....+..+.+.+++.+++++++++......  .....
T Consensus       186 ~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~  263 (490)
T PLN02500        186 NLMAKHIMSMDPGEEETEQLKKEYVTFMKGVVSAPLNFPGTAYRKALKSRATILKFIERKMEERIEKLKEEDE--SVEED  263 (490)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHhhhhcchhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--CCCcc
Confidence            999999999876432  233333333322211    111   1223445667777788888877654332211  11346


Q ss_pred             cHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhc-----CCCccc
Q 011096          258 DLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH-----RTGKVN  332 (493)
Q Consensus       258 ~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~-----~~~~~~  332 (493)
                      |+++.+++..       .++++++++++.++++||+|||+++++|++++|++||++|+|+++|++++.+     +.+.++
T Consensus       264 d~l~~ll~~~-------~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~  336 (490)
T PLN02500        264 DLLGWVLKHS-------NLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELN  336 (490)
T ss_pred             hHHHHHHhcc-------CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCC
Confidence            8999998631       3899999999999999999999999999999999999999999999999864     234578


Q ss_pred             cccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCC
Q 011096          333 ETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVD  412 (493)
Q Consensus       333 ~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~  412 (493)
                      ++|+++|||++|||+||||++|+++.. +|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||++++..
T Consensus       337 ~~d~~~lpyl~avikEtlRl~P~~~~~-~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~  415 (490)
T PLN02500        337 WEDYKKMEFTQCVINETLRLGNVVRFL-HRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNR  415 (490)
T ss_pred             HHHhccCHHHHHHHHHHHhcCCCccCe-eeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcc
Confidence            999999999999999999999999987 6999999999999999999999999999999999999999999999975432


Q ss_pred             CC------CCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeec
Q 011096          413 YK------GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  486 (493)
Q Consensus       413 ~~------~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      ..      ..+..|+|||+|+|.|+|++||++|++++++.|+++|+|++.++..    ... .. . +.++.++.|++.+
T Consensus       416 ~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~----~~~-~~-~-~~~~~~l~~~~~~  488 (490)
T PLN02500        416 GGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ----AFA-FP-F-VDFPKGLPIRVRR  488 (490)
T ss_pred             cccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc----cee-cc-c-ccCCCCceEEEEe
Confidence            11      2356799999999999999999999999999999999999876532    111 11 2 2445688888764


No 13 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=3.1e-74  Score=563.29  Aligned_cols=448  Identities=30%  Similarity=0.575  Sum_probs=346.9

Q ss_pred             CCCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhh
Q 011096           35 RISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (493)
Q Consensus        35 ~~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~  114 (493)
                      ++.+.||||+++|++|++..+.....+..+.+|+++||++|++++++.++|+|+||+.+++++.++...|.+++......
T Consensus        27 ~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~  106 (503)
T PLN02394         27 KKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFD  106 (503)
T ss_pred             CcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHh
Confidence            34577899999999999987733335678999999999999999999999999999999999987766677665443333


Q ss_pred             hhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhh---CCCceeeHHHHHHHHHHHHhh
Q 011096          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK---AGSVINLTQNVHSLMYGITSR  191 (493)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~vdl~~~~~~~~~~~~~~  191 (493)
                      .+...+.+.++..+|+.|+++||.+..++|+++.+..+.+.+.++++++++.|.+.   .++.+|+.+.+..+++|++++
T Consensus       107 ~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~  186 (503)
T PLN02394        107 IFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYR  186 (503)
T ss_pred             HhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHH
Confidence            33333445677888999999999955689999999999999999999999988743   245699999999999999999


Q ss_pred             hhcCCCCccHH-HHH----HHHHHHHHHhcc--------cCh-H----hHHHHHHH----HHH-HHHHHHHHHHHhhhhh
Q 011096          192 AAFGNRSRDQE-AFV----AVIEETTKVISG--------FNI-A----DVETLHQE----GVR-IVENIINEHKKRKATL  248 (493)
Q Consensus       192 ~~fG~~~~~~~-~~~----~~~~~~~~~~~~--------~~~-~----~~~~~~~~----~~~-~~~~~i~~~~~~~~~~  248 (493)
                      ++||.+++..+ ...    ............        ... .    .+.+....    ... +.+.+++++++..+..
T Consensus       187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  266 (503)
T PLN02394        187 MMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICQDVKERRLALFKDYFVDERKKLMSAK  266 (503)
T ss_pred             HHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999875321 111    111111111100        000 0    00111111    111 2233444444322111


Q ss_pred             ccCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCC
Q 011096          249 KNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT  328 (493)
Q Consensus       249 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~  328 (493)
                      . .+.....|+++.|+++.+++    .++++++..++.++++||+|||+++++|++++|++||++|+||++||+++++.+
T Consensus       267 ~-~~~~~~~d~l~~ll~~~~~~----~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~  341 (503)
T PLN02394        267 G-MDKEGLKCAIDHILEAQKKG----EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPG  341 (503)
T ss_pred             c-CCcchhhhHHHHHHhccccC----CCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCC
Confidence            0 01113468999999875432    489999999999999999999999999999999999999999999999999876


Q ss_pred             CccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCcccccc
Q 011096          329 GKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLD  408 (493)
Q Consensus       329 ~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~  408 (493)
                      +.++++++++||||+|||+|+||++|++++..+|.+.+|++++||.||+||.|.++.+.+||||++|+||++|+||||++
T Consensus       342 ~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~  421 (503)
T PLN02394        342 NQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLE  421 (503)
T ss_pred             CCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCC
Confidence            67889999999999999999999999999988899999999999999999999999999999999999999999999997


Q ss_pred             CCCC--CCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccC-eeeccCCceeEEee
Q 011096          409 HSVD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFG-VTVRRKQDLCMTPI  485 (493)
Q Consensus       409 ~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  485 (493)
                      ++..  .......++|||+|+|+|+|++||++|++++++.|+++|+|++.++.+  .++.....+ ..+..+.+.++++.
T Consensus       422 ~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  499 (503)
T PLN02394        422 EEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS--KIDVSEKGGQFSLHIAKHSTVVFK  499 (503)
T ss_pred             CCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC--cCccccccCceeeccCCCceEEee
Confidence            5431  122356799999999999999999999999999999999999876642  234443343 44556779999999


Q ss_pred             ccCC
Q 011096          486 PYHP  489 (493)
Q Consensus       486 ~r~~  489 (493)
                      ||..
T Consensus       500 ~r~~  503 (503)
T PLN02394        500 PRSA  503 (503)
T ss_pred             cCCC
Confidence            9863


No 14 
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=1.7e-74  Score=566.37  Aligned_cols=438  Identities=21%  Similarity=0.375  Sum_probs=346.0

Q ss_pred             CCCCCCCCCCCcccccccccC------------------CCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHH
Q 011096           37 SNPPPGPWKLPVIGNLYQLAG------------------SLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMK   98 (493)
Q Consensus        37 ~~~ppgp~~~p~iG~~~~~~~------------------~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~   98 (493)
                      ...||||+++|++||++.+..                  .+....+.+|+++||++|++++++.++++++||+.+++++.
T Consensus        41 ~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~  120 (516)
T PLN02290         41 RQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLT  120 (516)
T ss_pred             HcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHh
Confidence            456899999999999977621                  12333578899999999999999999999999999999998


Q ss_pred             hcCcccCCCCCCchhhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhh---CCCce
Q 011096           99 THDVVFASRPHFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK---AGSVI  175 (493)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~v  175 (493)
                      ++.. +..++...........+. +++..+|+.|+++||. +.+.|+++.++.+.+.+.++++.+++.|.+.   +++.+
T Consensus       121 ~~~~-~~~r~~~~~~~~~~~~g~-~l~~~~g~~Wk~~Rk~-~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~v  197 (516)
T PLN02290        121 KYNT-VTGKSWLQQQGTKHFIGR-GLLMANGADWYHQRHI-AAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEV  197 (516)
T ss_pred             cCCC-CCCCcchhhhHHHHHhcC-CccccCchHHHHHHhh-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence            7633 444432211111111133 4566789999999999 6789999999999999999999999999742   23579


Q ss_pred             eeHHHHHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHHhc------ccCh---------HhHHHHHHHHHHHHHHHHHH
Q 011096          176 NLTQNVHSLMYGITSRAAFGNRSRDQEAFVAVIEETTKVIS------GFNI---------ADVETLHQEGVRIVENIINE  240 (493)
Q Consensus       176 dl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~~~~~~~~~~~i~~  240 (493)
                      |+.+++..++++++++++||.++...+++.+.+..+.....      ..+.         .......+.+.+++.+.+++
T Consensus       198 d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~  277 (516)
T PLN02290        198 EIGEYMTRLTADIISRTEFDSSYEKGKQIFHLLTVLQRLCAQATRHLCFPGSRFFPSKYNREIKSLKGEVERLLMEIIQS  277 (516)
T ss_pred             EhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhhhhhcCchhhhCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987654444444333322111      0010         01123455667777778877


Q ss_pred             HHHhhhhhccCCCCCCCcHHHHHHhhhccC-CCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHH
Q 011096          241 HKKRKATLKNCKTGDDEDLVDVLLKIQGHG-DLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQA  319 (493)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~  319 (493)
                      +++.......  .....|+++.+++..... ..+..++++++.+++.++++||+|||+++++|++++|++||++|+|+++
T Consensus       278 ~~~~~~~~~~--~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~  355 (516)
T PLN02290        278 RRDCVEIGRS--SSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRA  355 (516)
T ss_pred             HHHHhhcccC--CCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            7654332211  113578999999764322 1123478999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCC-CCC
Q 011096          320 EVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYW-TEP  398 (493)
Q Consensus       320 Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p  398 (493)
                      ||+++++++ .++++++++||||+|||+||||++|+++.. +|.+.+|++++||.|||||.|.++.+++||||++| +||
T Consensus       356 Ei~~v~~~~-~~~~~~l~~lpYl~avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP  433 (516)
T PLN02290        356 EVAEVCGGE-TPSVDHLSKLTLLNMVINESLRLYPPATLL-PRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDA  433 (516)
T ss_pred             HHHHHhCCC-CCCHHHHhcChHHHHHHHHHHHcCCCcccc-ceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCCh
Confidence            999999864 789999999999999999999999999975 89999999999999999999999999999999999 899


Q ss_pred             CCcCccccccCCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCC
Q 011096          399 ESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQ  478 (493)
Q Consensus       399 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (493)
                      ++|+||||+++..   .....|+|||+|+|.|+|++||++|++++++.|+++|+|++.++.+     ......+++.|++
T Consensus       434 ~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~-----~~~~~~~~~~p~~  505 (516)
T PLN02290        434 NEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR-----HAPVVVLTIKPKY  505 (516)
T ss_pred             hhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc-----cCccceeeecCCC
Confidence            9999999995431   1345799999999999999999999999999999999999876532     1112357789999


Q ss_pred             ceeEEeeccCC
Q 011096          479 DLCMTPIPYHP  489 (493)
Q Consensus       479 ~~~~~~~~r~~  489 (493)
                      ++.+++++|.+
T Consensus       506 ~~~~~~~~~~~  516 (516)
T PLN02290        506 GVQVCLKPLNP  516 (516)
T ss_pred             CCeEEEEeCCC
Confidence            99999999864


No 15 
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=2.1e-74  Score=555.54  Aligned_cols=438  Identities=27%  Similarity=0.483  Sum_probs=349.5

Q ss_pred             CCCCCCCCCCCCcccccccccCC--CCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCc-h
Q 011096           36 ISNPPPGPWKLPVIGNLYQLAGS--LPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFP-A  112 (493)
Q Consensus        36 ~~~~ppgp~~~p~iG~~~~~~~~--~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~-~  112 (493)
                      ....||||.++|++|+...+...  +...++.++..+||++|+.|+++.++++++||+.+++|+.+......+.+.+. .
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~  112 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES  112 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence            45678999999999999988543  56667889999999999999999999999999999999976555555555444 2


Q ss_pred             hhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhh-CCCceeeHHHHHHHHHHHHhh
Q 011096          113 AQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK-AGSVINLTQNVHSLMYGITSR  191 (493)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~vdl~~~~~~~~~~~~~~  191 (493)
                      ...+.  |.+ ++..+|+.|+.+||+ ..+.|+.+.++.+...+.++...+...+... .++.+|+.+.+.++++|+++.
T Consensus       113 ~~~~l--G~g-ll~~~g~~W~~~Rk~-~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~  188 (497)
T KOG0157|consen  113 LKPWL--GDG-LLFSDGEKWHKHRKL-LTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICK  188 (497)
T ss_pred             HHHHh--cCc-cccCCchHHHHHHhh-ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHH
Confidence            22221  444 455559999999999 6899998889999888888888877766542 334499999999999999999


Q ss_pred             hhcCCCC-c----cHHHHHHHHHHHHHHhccc---C-----------hHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011096          192 AAFGNRS-R----DQEAFVAVIEETTKVISGF---N-----------IADVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (493)
Q Consensus       192 ~~fG~~~-~----~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (493)
                      ++||... .    ...++..++......+...   +           .....++.+.+.++++++|+++++........+
T Consensus       189 ~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~~  268 (497)
T KOG0157|consen  189 TAMGPESLDAEGPELFEYVQAFDDLTELISKRINLPLGTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKEGSGE  268 (497)
T ss_pred             HhcCCccccccCCcccHHHHHHHHHHHHHHHHHcCchhhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            9999322 1    1225555555444332211   1           112255778888888999988887655432211


Q ss_pred             CCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCc-c
Q 011096          253 TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGK-V  331 (493)
Q Consensus       253 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~-~  331 (493)
                      .....|+++.+....+     ..++++++++++.+|++||+|||+++++|+++.|+.||++|+|+++|+++++++... .
T Consensus       269 ~~~~~d~L~~~~~~~~-----~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~  343 (497)
T KOG0157|consen  269 EKKRLDFLDTLLLEED-----KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKW  343 (497)
T ss_pred             cchhhhHHHHHHHhcc-----CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCC
Confidence            1245778886333222     358999999999999999999999999999999999999999999999999975432 2


Q ss_pred             ccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeE-cceecCCCCEEEeehhhhccCCCCCC-CCCCcCccccccC
Q 011096          332 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGRDPEYWT-EPESFIPERFLDH  409 (493)
Q Consensus       332 ~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~F~P~R~l~~  409 (493)
                      +....++|+||++||+||||||||+|... |.+.+|+++ +||.||||+.|.++++.+|||+.+|+ ||++||||||+++
T Consensus       344 ~~~~~~~m~yl~~vi~EsLRLyppvp~~~-R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~  422 (497)
T KOG0157|consen  344 EVEKLDQMKYLEMVIKESLRLYPPVPLVA-RKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDG  422 (497)
T ss_pred             ChhhhhhhHHHHHHHHHHhccCCCCchhh-cccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCC
Confidence            33333369999999999999999999995 999999999 58999999999999999999999996 9999999999976


Q ss_pred             CCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccC
Q 011096          410 SVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  488 (493)
Q Consensus       410 ~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  488 (493)
                      ......+++.|+|||+|+|.|+|++||++||+++++.++++|+|++..+..     .......++++.+++.|+++||.
T Consensus       423 ~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~-----~~~~~~~~l~~~~gl~v~~~~r~  496 (497)
T KOG0157|consen  423 EEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK-----PKPVPELTLRPKNGLKVKLRPRG  496 (497)
T ss_pred             CCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC-----ceeeeEEEEEecCCeEEEEEeCC
Confidence            543345678999999999999999999999999999999999999876642     34456888999999999999986


No 16 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=8.7e-73  Score=546.18  Aligned_cols=432  Identities=26%  Similarity=0.469  Sum_probs=344.7

Q ss_pred             CCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhhhhcC
Q 011096           40 PPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILSYN  119 (493)
Q Consensus        40 ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~~~~~  119 (493)
                      ||||+++|++||++++...+++..+.+|+++||++|+++++++++++|+||+++++++.++...|+.++.......+.. 
T Consensus         1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~-   79 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTR-   79 (466)
T ss_pred             CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhc-
Confidence            6899999999999888555688999999999999999999999999999999999999988878877754433332222 


Q ss_pred             CceeEec-cCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh----hCCCceeeHHHHHHHHHHHHhhhhc
Q 011096          120 YRDIIFS-SYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS----KAGSVINLTQNVHSLMYGITSRAAF  194 (493)
Q Consensus       120 ~~~~~~~-~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~~~~~vdl~~~~~~~~~~~~~~~~f  194 (493)
                      ....++. .+|+.|+.+||.+.+++++...++.+.+.+.+.++.+++.+.+    ..++.+|+.+.+..+++++++.++|
T Consensus        80 ~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~f  159 (466)
T PLN02655         80 DKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQAL  159 (466)
T ss_pred             CCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHh
Confidence            1223333 4589999999987888999888888888888887777777642    2467899999999999999999999


Q ss_pred             CCCCccH------------HHHHHHHHHHHHHhccc------ChH------hHHH----HHHHHHHHHHHHHHHHHHhhh
Q 011096          195 GNRSRDQ------------EAFVAVIEETTKVISGF------NIA------DVET----LHQEGVRIVENIINEHKKRKA  246 (493)
Q Consensus       195 G~~~~~~------------~~~~~~~~~~~~~~~~~------~~~------~~~~----~~~~~~~~~~~~i~~~~~~~~  246 (493)
                      |.+....            +.+...+..+.......      +..      .+.+    ......+++++++++++++..
T Consensus       160 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  239 (466)
T PLN02655        160 GEDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIA  239 (466)
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9875421            12233333333222111      000      0111    122234556666666554432


Q ss_pred             hhccCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhc
Q 011096          247 TLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH  326 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~  326 (493)
                      ...     ...|+++.++....      .++++++.+++.++++||+|||+++++|++++|++||++|+++++||+++.+
T Consensus       240 ~~~-----~~~d~l~~ll~~~~------~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~  308 (466)
T PLN02655        240 RGE-----ERDCYLDFLLSEAT------HLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCG  308 (466)
T ss_pred             CCC-----CcccHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhC
Confidence            211     24689999997542      3899999999999999999999999999999999999999999999999988


Q ss_pred             CCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCcccc
Q 011096          327 RTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERF  406 (493)
Q Consensus       327 ~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~  406 (493)
                      +.. ++++++++||||+|||+||||++|+++...+|.+.+|++++|+.|||||.|+++.+++||||++|+||++|+||||
T Consensus       309 ~~~-~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~  387 (466)
T PLN02655        309 DER-VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERF  387 (466)
T ss_pred             CCC-CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCcccc
Confidence            644 8999999999999999999999999999878999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeec
Q 011096          407 LDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  486 (493)
Q Consensus       407 l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      +++.... .....++|||+|+|.|||++||+.|++++++.|+++|+|++.++..    +.....++++.+++++.+++++
T Consensus       388 ~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  462 (466)
T PLN02655        388 LGEKYES-ADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE----EKEDTVQLTTQKLHPLHAHLKP  462 (466)
T ss_pred             CCCCccc-CCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc----cccchhheeEeecCCcEEEEee
Confidence            9764321 2346899999999999999999999999999999999999976532    1223456778899999999998


Q ss_pred             cCC
Q 011096          487 YHP  489 (493)
Q Consensus       487 r~~  489 (493)
                      |.+
T Consensus       463 r~~  465 (466)
T PLN02655        463 RGS  465 (466)
T ss_pred             cCC
Confidence            864


No 17 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=2.6e-71  Score=539.46  Aligned_cols=449  Identities=26%  Similarity=0.448  Sum_probs=341.2

Q ss_pred             CCCCCCCCCCCCCCcccccccccCCCCc-chHHHHHhhc-CCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCc
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLAGSLPH-HGLRDLSKKY-GPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFP  111 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~~~~~~-~~~~~~~~ky-G~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~  111 (493)
                      .....+||||+++|++||++.+....+. .++.++.++| |+||+++++++++|+|+||+.+++++.++...|+.++...
T Consensus        36 ~~~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~  115 (534)
T PLN03018         36 DRSRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLS  115 (534)
T ss_pred             CCCCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCch
Confidence            3344578999999999999887433333 3566777776 7999999999999999999999999998877788877544


Q ss_pred             hhhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHH
Q 011096          112 AAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGIT  189 (493)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~  189 (493)
                      ....+..++.+.++..+|+.|+.+|+.+...+++......+......+++++++.+.+  ..++++|+.+.+..++++++
T Consensus       116 ~~~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi  195 (534)
T PLN03018        116 IMETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVT  195 (534)
T ss_pred             hhhhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHH
Confidence            4333332223455555699999999995544456666666666666778888888864  24567999999999999999


Q ss_pred             hhhhcCCCCcc-------HHH----HHHHHHHHHH---HhcccCh----H-------------hHHHHHHHHHHHHHHHH
Q 011096          190 SRAAFGNRSRD-------QEA----FVAVIEETTK---VISGFNI----A-------------DVETLHQEGVRIVENII  238 (493)
Q Consensus       190 ~~~~fG~~~~~-------~~~----~~~~~~~~~~---~~~~~~~----~-------------~~~~~~~~~~~~~~~~i  238 (493)
                      ++++||.++..       ..+    +.........   .......    .             ..........+++++++
T Consensus       196 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  275 (534)
T PLN03018        196 MRMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRSYNNPII  275 (534)
T ss_pred             HHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999987531       111    1111111111   1111000    0             01112234556667777


Q ss_pred             HHHHHhhhhhccCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHH
Q 011096          239 NEHKKRKATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQ  318 (493)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~  318 (493)
                      +++++......  ......|+++.|+...++.+ ...++++++++++.++++||+|||+++++|++++|++||++|+|++
T Consensus       276 ~~~~~~~~~~~--~~~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~  352 (534)
T PLN03018        276 DERVELWREKG--GKAAVEDWLDTFITLKDQNG-KYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKAL  352 (534)
T ss_pred             HHHHHHhhhcc--CCCCcccHHHHHHHhhcccC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            77665432111  00124689999997653321 1138999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCC
Q 011096          319 AEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEP  398 (493)
Q Consensus       319 ~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p  398 (493)
                      +||++++++++.++.+++.+||||+|||+|+||++|+++...+|.+.+|++++||.|||||.|+++.+++||||++|+||
T Consensus       353 ~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p  432 (534)
T PLN03018        353 KELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDP  432 (534)
T ss_pred             HHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCc
Confidence            99999998777789999999999999999999999999988679999999999999999999999999999999999999


Q ss_pred             CCcCccccccCCCCC-----CCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCee
Q 011096          399 ESFIPERFLDHSVDY-----KGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVT  473 (493)
Q Consensus       399 ~~F~P~R~l~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~  473 (493)
                      ++|+||||+++++..     ...+..++|||+|+|.|+|++||.+|+++++++|+++|+|++.++..  +++.....+.+
T Consensus       433 ~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~  510 (534)
T PLN03018        433 LVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFG--PLSLEEDDASL  510 (534)
T ss_pred             cccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCC--CCCccccccce
Confidence            999999999754321     12346799999999999999999999999999999999999876531  23333333444


Q ss_pred             eccCCceeEEeeccC
Q 011096          474 VRRKQDLCMTPIPYH  488 (493)
Q Consensus       474 ~~~~~~~~~~~~~r~  488 (493)
                      . .+.++.++++||.
T Consensus       511 ~-~p~~~~v~~~~R~  524 (534)
T PLN03018        511 L-MAKPLLLSVEPRL  524 (534)
T ss_pred             e-cCCCeEEEEEecc
Confidence            4 4579999999994


No 18 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=3e-72  Score=542.00  Aligned_cols=421  Identities=20%  Similarity=0.305  Sum_probs=333.3

Q ss_pred             CCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhhh
Q 011096           37 SNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQIL  116 (493)
Q Consensus        37 ~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~~  116 (493)
                      +..||||+++|++||.+.+ ..++..++.+++++||++|+++++++++++|+||+.+++++.++...|..+........+
T Consensus        30 ~~~ppgp~~~P~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~l  108 (463)
T PLN02774         30 KGLPPGTMGWPLFGETTEF-LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDIL  108 (463)
T ss_pred             CCCCCCCCCCCchhhHHHH-HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHHh
Confidence            3567899899999999877 446678999999999999999999999999999999999998766555333221112222


Q ss_pred             hcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhh-cHHHHHHHHHHHHHHHHhhCCCceeeHHHHHHHHHHHHhhhhcC
Q 011096          117 SYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS-FQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAAFG  195 (493)
Q Consensus       117 ~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG  195 (493)
                         +.++++..+|+.|+.+|+.+ .+.|++..++. +.+.+.+.++++++.|..  ++.+|+.+.+..++++++..++||
T Consensus       109 ---g~~~~~~~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~g  182 (463)
T PLN02774        109 ---GTCNIAAVHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWDG--LKTIDIQEKTKEMALLSALKQIAG  182 (463)
T ss_pred             ---CccchhhcCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhCC--CCCEEeeHHHHHHHHHHHHHHHcC
Confidence               33456667899999999994 78899988875 688888888888888753  357999999999999999999999


Q ss_pred             CCCccH-HHHHHHHHHHHHHhcc----cCh---HhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHhhh
Q 011096          196 NRSRDQ-EAFVAVIEETTKVISG----FNI---ADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLLKIQ  267 (493)
Q Consensus       196 ~~~~~~-~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  267 (493)
                      .+.... +++...+..+......    .+.   ....++.+.+.+++.+.++++++..        ...+|+++.+++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~~--------~~~~d~l~~ll~~~  254 (463)
T PLN02774        183 TLSKPISEEFKTEFFKLVLGTLSLPIDLPGTNYRSGVQARKNIVRMLRQLIQERRASG--------ETHTDMLGYLMRKE  254 (463)
T ss_pred             CCChHHHHHHHHHHHHHhcccccCCcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhcC--------CCcccHHHHHHhCc
Confidence            875432 2233322222211111    111   1223455666667777776654321        13579999998743


Q ss_pred             ccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcC---CCccccccCCCCccHHH
Q 011096          268 GHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR---TGKVNETSIDEMKFLKL  344 (493)
Q Consensus       268 ~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~~~~l~~l~a  344 (493)
                      ..   ...++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++++.+.   ++.++++++++||||+|
T Consensus       255 ~~---~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a  331 (463)
T PLN02774        255 GN---RYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRA  331 (463)
T ss_pred             cC---CCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHH
Confidence            22   1248999999999999999999999999999999999999999999999999863   35688999999999999


Q ss_pred             HHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCCCCCCceeeecC
Q 011096          345 VVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNFEYIPFG  424 (493)
Q Consensus       345 ~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg  424 (493)
                      ||+|+||++|+++.. +|.+.+|++++||.||||+.|+++.+.+||||++|+||++|+||||++++..  .. ..|+|||
T Consensus       332 ~ikE~lRl~P~v~~~-~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~--~~-~~~lpFG  407 (463)
T PLN02774        332 VIFETSRLATIVNGV-LRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE--SH-NYFFLFG  407 (463)
T ss_pred             HHHHHHhcCCCCCCc-ccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC--CC-ccccCcC
Confidence            999999999999876 5999999999999999999999999999999999999999999999975421  12 3599999


Q ss_pred             CCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeec
Q 011096          425 AGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  486 (493)
Q Consensus       425 ~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      +|+|.|||++||++|++++++.|+++|+|++.++..   +  ..  ..++.|++++.|++.|
T Consensus       408 ~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~---~--~~--~~~~~p~~g~~~~~~~  462 (463)
T PLN02774        408 GGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDK---L--MK--FPRVEAPNGLHIRVSP  462 (463)
T ss_pred             CCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCc---c--cc--CCCCCCCCCceEEeee
Confidence            999999999999999999999999999999976532   1  11  1234578999998875


No 19 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=4.4e-71  Score=533.32  Aligned_cols=420  Identities=21%  Similarity=0.359  Sum_probs=337.9

Q ss_pred             CCCCCCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchh
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAA  113 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~  113 (493)
                      ......||||+++|++||.+.+...+++.++.+++++||++|++++++.++|+++||+.+++++.++...|.  +.....
T Consensus        31 ~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~--~~~~~~  108 (463)
T PLN02196         31 STKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK--PTFPAS  108 (463)
T ss_pred             CCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccc--ccCchH
Confidence            334566888889999999887656788999999999999999999999999999999999999987765553  222222


Q ss_pred             hhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhhCCCceeeHHHHHHHHHHHHhhhh
Q 011096          114 QILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAA  193 (493)
Q Consensus       114 ~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~  193 (493)
                      ..... +..+++..+|+.|+++||. +.+.|+++.+..+.+.+.+.+.++++.|.   ++.+|+.+++..+++++++.++
T Consensus       109 ~~~~~-g~~~l~~~~g~~w~~~Rk~-l~~~f~~~~l~~~~~~i~~~~~~~~~~~~---~~~v~~~~~~~~~~~~v~~~~~  183 (463)
T PLN02196        109 KERML-GKQAIFFHQGDYHAKLRKL-VLRAFMPDAIRNMVPDIESIAQESLNSWE---GTQINTYQEMKTYTFNVALLSI  183 (463)
T ss_pred             HHHHc-CcccccccCcHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHcCC---CCeEEeHHHHHHHHHHHHHHHH
Confidence            11112 3445677889999999999 57889999999999999999999998874   3579999999999999999999


Q ss_pred             cCCCCcc-HHHHHHHHHHHHHH---hc-ccC---hHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHh
Q 011096          194 FGNRSRD-QEAFVAVIEETTKV---IS-GFN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLLK  265 (493)
Q Consensus       194 fG~~~~~-~~~~~~~~~~~~~~---~~-~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ll~  265 (493)
                      ||.+... .+.+.+....+...   +. ...   .....++.+.+.+++.+.++++++...        ...|+++.+++
T Consensus       184 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~--------~~~d~l~~ll~  255 (463)
T PLN02196        184 FGKDEVLYREDLKRCYYILEKGYNSMPINLPGTLFHKSMKARKELAQILAKILSKRRQNGS--------SHNDLLGSFMG  255 (463)
T ss_pred             cCCCCchHHHHHHHHHHHHhcchhcccccCCCccchHHHHHHHHHHHHHHHHHHHHhhcCC--------CcccHHHHHHh
Confidence            9987543 22332222222111   11 111   122345566667777777766554211        35689998885


Q ss_pred             hhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcC---CCccccccCCCCccH
Q 011096          266 IQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR---TGKVNETSIDEMKFL  342 (493)
Q Consensus       266 ~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~~~~l~~l  342 (493)
                      ..      ..++++++.+++.++++||+|||+++++|++++|++||++|+++++|++++.+.   ++.+++++++++|||
T Consensus       256 ~~------~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl  329 (463)
T PLN02196        256 DK------EGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLT  329 (463)
T ss_pred             cC------CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHH
Confidence            31      248999999999999999999999999999999999999999999999998763   356889999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCCCCCCceeee
Q 011096          343 KLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNFEYIP  422 (493)
Q Consensus       343 ~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~  422 (493)
                      +|||+|+||++|++++.. |.+.+|++++||.|||||.|+++.+.+||||++|+||++|+||||+++.     .+..++|
T Consensus       330 ~avi~EtlRl~p~~~~~~-R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lp  403 (463)
T PLN02196        330 SRVIQETLRVASILSFTF-REAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMP  403 (463)
T ss_pred             HHHHHHHHhcCCCccccc-eeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccC
Confidence            999999999999999984 9999999999999999999999999999999999999999999999632     3467999


Q ss_pred             cCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeec
Q 011096          423 FGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  486 (493)
Q Consensus       423 Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      ||+|+|.|+|+++|++|++++++.|+++|+|++.++..    +..  ...+..|+.++.|++.+
T Consensus       404 FG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~----~~~--~~~~~~p~~~~~~~~~~  461 (463)
T PLN02196        404 FGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN----GIQ--YGPFALPQNGLPIALSR  461 (463)
T ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC----ceE--EcccccCCCCceEEEec
Confidence            99999999999999999999999999999999875432    222  23345688888887654


No 20 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=5.1e-71  Score=541.31  Aligned_cols=436  Identities=20%  Similarity=0.331  Sum_probs=331.9

Q ss_pred             CCCCCCCCcccccccccCCCCcchHHHHHhhc---CCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhhh
Q 011096           40 PPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKY---GPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQIL  116 (493)
Q Consensus        40 ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~ky---G~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~~  116 (493)
                      +|||+++|++||.+.+.. + +..+.+|.++|   |++|++++++.++++++||+.+++|+.++...|.+.+.+..... 
T Consensus        32 ~pgp~~~p~~G~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~-  108 (516)
T PLN03195         32 RKGPKSWPIIGAALEQLK-N-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYME-  108 (516)
T ss_pred             cCCCCCCCeecchHHHHh-c-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHH-
Confidence            689999999999876533 2 44567888888   89999999999999999999999999876445554432211110 


Q ss_pred             hcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHH-HHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHHhhhh
Q 011096          117 SYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIR-EAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRAA  193 (493)
Q Consensus       117 ~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~~~~~  193 (493)
                      ...+. .+++.+|+.|+.+||. +++.|+...++.+.+.+ .+.++.+.+.+.+  ..++++|+.+++..+++|+++.++
T Consensus       109 ~~~g~-~l~~~~g~~w~~~Rr~-l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~  186 (516)
T PLN03195        109 VLLGD-GIFNVDGELWRKQRKT-ASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVG  186 (516)
T ss_pred             HHhcC-eeeccCcHHHHHHHHh-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHH
Confidence            11133 3667889999999999 68889999999988875 5556667666653  245679999999999999999999


Q ss_pred             cCCCCccH------HHHHHHHHHHHHHh-----cccC-h---------HhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011096          194 FGNRSRDQ------EAFVAVIEETTKVI-----SGFN-I---------ADVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (493)
Q Consensus       194 fG~~~~~~------~~~~~~~~~~~~~~-----~~~~-~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (493)
                      ||.+++..      ..+.+.+.......     .... .         ....+..+.+.+++.+.+++++++....+...
T Consensus       187 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  266 (516)
T PLN03195        187 FGVEIGTLSPSLPENPFAQAFDTANIIVTLRFIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKSG  266 (516)
T ss_pred             hCCCccccccCCCccHHHHHHHHHHHHHHHHHhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99876421      23443333322111     1100 0         01123445566667777777665432211101


Q ss_pred             CCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcC-----
Q 011096          253 TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR-----  327 (493)
Q Consensus       253 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~-----  327 (493)
                      .....|+++.++++..+.  ...++++++++++.++++||+|||+++++|++++|++||++|+|+++||+++.++     
T Consensus       267 ~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~  344 (516)
T PLN03195        267 KKVKHDILSRFIELGEDP--DSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEE  344 (516)
T ss_pred             ccccccHHHHHHhccCCC--CCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccc
Confidence            113568999999754321  2358999999999999999999999999999999999999999999999988643     


Q ss_pred             ---------------CCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeE-cceecCCCCEEEeehhhhccC
Q 011096          328 ---------------TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGRD  391 (493)
Q Consensus       328 ---------------~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~~~~~~~~~d  391 (493)
                                     ++.++++++++||||+|||+||||++|+++.. +|.+.+|..+ +|+.|||||.|+++.+.+|||
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~-~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~d  423 (516)
T PLN03195        345 DPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQD-PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM  423 (516)
T ss_pred             cccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcch-hhhhccCcCcCCCcEECCCCEEEEehHhhccC
Confidence                           24578999999999999999999999999998 4767776555 999999999999999999999


Q ss_pred             CCCC-CCCCCcCccccccCCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCccccc
Q 011096          392 PEYW-TEPESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAF  470 (493)
Q Consensus       392 ~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~  470 (493)
                      |++| +||++|+||||+++.......+..|+|||+|+|.|+|++||++|++++++.|+++|++++.++.+   +  ....
T Consensus       424 p~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~---~--~~~~  498 (516)
T PLN03195        424 EYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHP---V--KYRM  498 (516)
T ss_pred             hhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCc---c--eeee
Confidence            9999 99999999999964321123456799999999999999999999999999999999999865432   2  2233


Q ss_pred             CeeeccCCceeEEeeccC
Q 011096          471 GVTVRRKQDLCMTPIPYH  488 (493)
Q Consensus       471 ~~~~~~~~~~~~~~~~r~  488 (493)
                      ..++.|+.++.|++++|.
T Consensus       499 ~~~~~~~~~~~v~~~~r~  516 (516)
T PLN03195        499 MTILSMANGLKVTVSRRS  516 (516)
T ss_pred             eeEEecCCCEEEEEEeCC
Confidence            456789999999999874


No 21 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=1.1e-70  Score=530.11  Aligned_cols=432  Identities=21%  Similarity=0.291  Sum_probs=338.8

Q ss_pred             CCCCCCCCCCCCCCccccccccc----CCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCC
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPH  109 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~----~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~  109 (493)
                      ++++++||||+++|++||++.+.    ..+++.++.+++++||+||++++++.++++++||+++++++.++...|..+..
T Consensus         3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~   82 (452)
T PLN03141          3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP   82 (452)
T ss_pred             CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence            45667889999999999998763    24688899999999999999999999999999999999999987766654422


Q ss_pred             CchhhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhh-cHHHHHHHHHHHHHHHHhhCCCceeeHHHHHHHHHHH
Q 011096          110 FPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS-FQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGI  188 (493)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~  188 (493)
                      . ....+.  +.++++..+|+.|+++|+. +.+.|+...+.. +.+.+.+.+.++++.|.  .++.+|+.+.+..+++++
T Consensus        83 ~-~~~~l~--g~~~~~~~~g~~wr~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v  156 (452)
T PLN03141         83 K-SLTELM--GKSSILLINGSLQRRVHGL-IGAFLKSPHLKAQITRDMERYVSESLDSWR--DDPPVLVQDETKKIAFEV  156 (452)
T ss_pred             h-hHHHHh--CcccccccCcHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHHHHHhcc--CCCCEEhHHHHHHHHHHH
Confidence            1 121121  3345677789999999999 567777665554 34556666666666653  356799999999999999


Q ss_pred             HhhhhcCCCCcc-HHHHHHHHHHHHHHhcc----cCh---HhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHH
Q 011096          189 TSRAAFGNRSRD-QEAFVAVIEETTKVISG----FNI---ADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLV  260 (493)
Q Consensus       189 ~~~~~fG~~~~~-~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  260 (493)
                      +++++||.+... .+++...+..+......    .+.   ....++.+.+.+++..++++++...............|++
T Consensus       157 i~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l  236 (452)
T PLN03141        157 LVKALISLEPGEEMEFLKKEFQEFIKGLMSLPIKLPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIPKDVV  236 (452)
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHhhhHHhCccCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCChhhHH
Confidence            999999987642 22333333333222111    111   1223456777788888888776554321110001246899


Q ss_pred             HHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhc----CCCccccccC
Q 011096          261 DVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH----RTGKVNETSI  336 (493)
Q Consensus       261 ~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~----~~~~~~~~~~  336 (493)
                      +.+++...     ..+++++++.++.++++||+|||+.+++|++++|++||++|+++++|++++.+    .++.++++++
T Consensus       237 ~~ll~~~~-----~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~  311 (452)
T PLN03141        237 DVLLRDGS-----DELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDY  311 (452)
T ss_pred             HHHHhcCC-----CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHH
Confidence            99887542     24899999999999999999999999999999999999999999999998863    2345788899


Q ss_pred             CCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCCCCC
Q 011096          337 DEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGT  416 (493)
Q Consensus       337 ~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~  416 (493)
                      .+||||+|||+|+||++|+++.. +|.+.+|++++||.||||+.|+++.+.+|||+++|+||++|+||||++++.    .
T Consensus       312 ~~lpyl~avi~E~lRl~p~~~~~-~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~  386 (452)
T PLN03141        312 MSLPFTQNVITETLRMGNIINGV-MRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----N  386 (452)
T ss_pred             hccHHHHHHHHHHHhccCCcCCc-ceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----C
Confidence            99999999999999999999866 799999999999999999999999999999999999999999999997532    3


Q ss_pred             CceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccCC
Q 011096          417 NFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  489 (493)
Q Consensus       417 ~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  489 (493)
                      +..|+|||+|+|.|+|++||.+|++++++.|+++|+|++.++..   .     ...++.|+.++.|++++|.-
T Consensus       387 ~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~  451 (452)
T PLN03141        387 NSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI---V-----NFPTVRMKRKLPIWVTRIDD  451 (452)
T ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe---e-----ecccccCCCCceEEEEeCCC
Confidence            46799999999999999999999999999999999999865421   1     12467899999999999853


No 22 
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=2.6e-70  Score=530.83  Aligned_cols=429  Identities=17%  Similarity=0.312  Sum_probs=324.4

Q ss_pred             CCCCCCCCcccccccccCCCCcchHHHHH----hhcCCeEE---EecCCccEEEecCHHHHHHHHHhcCcccCCCCCCch
Q 011096           40 PPGPWKLPVIGNLYQLAGSLPHHGLRDLS----KKYGPLML---LQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPA  112 (493)
Q Consensus        40 ppgp~~~p~iG~~~~~~~~~~~~~~~~~~----~kyG~v~~---~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~  112 (493)
                      .|||+++|++||+..+... ... +.++.    .+||..++   .++++.++++|+||+.+++|+.++...|.+++.+..
T Consensus        33 ~p~p~~~pl~G~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~  110 (500)
T PLN02169         33 QPILKNWPFLGMLPGMLHQ-IPR-IYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKK  110 (500)
T ss_pred             CCCCCCCCcccchHHHHHc-cCc-HHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHH
Confidence            5788899999999776433 233 44444    44786665   578899999999999999999887666666543221


Q ss_pred             hhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhh--cHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHH
Q 011096          113 AQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS--FQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGI  188 (493)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~--~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~  188 (493)
                      ..  ...+ ++++..+|+.|+.+||. +.+.|+...+..  +...+.+.++.+++.+.+  ..++.+|+.+.+..+++|+
T Consensus       111 ~~--~~~g-~gl~~~~g~~Wr~~Rk~-l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dv  186 (500)
T PLN02169        111 IF--DVLG-EGILTVDFELWEDLRKS-NHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDT  186 (500)
T ss_pred             HH--Hhhc-CcccccCcHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHH
Confidence            11  1123 45667789999999999 579998876653  235566667777777753  3456799999999999999


Q ss_pred             HhhhhcCCCCcc------HHHHHHHHHHHHHHhc---ccC--------------hHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011096          189 TSRAAFGNRSRD------QEAFVAVIEETTKVIS---GFN--------------IADVETLHQEGVRIVENIINEHKKRK  245 (493)
Q Consensus       189 ~~~~~fG~~~~~------~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~i~~~~~~~  245 (493)
                      +++++||.+.+.      ..++.+.+........   ..+              .....+..+.+.++++++|+++++..
T Consensus       187 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~  266 (500)
T PLN02169        187 SSILMTGYDPMSLSIEMLEVEFGEAADIGEEAIYYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEE  266 (500)
T ss_pred             HHhheeCCCccccCCCCCCCHHHHHHHHHHHHHHhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987532      1244444333221110   000              01124556677777788887776542


Q ss_pred             hhhccCCCCCCCcHHHHHHhhhccC-CCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 011096          246 ATLKNCKTGDDEDLVDVLLKIQGHG-DLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREV  324 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~  324 (493)
                      ..... ......|+++.+++..... .....++++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++
T Consensus       267 ~~~~~-~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v  345 (500)
T PLN02169        267 ISRAE-TEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTK  345 (500)
T ss_pred             hcccc-ccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhh
Confidence            21110 0112468999998764321 111247889999999999999999999999999999999999999999999986


Q ss_pred             hcCCCccccccCCCCccHHHHHHhhcCCCCCCCCCCcccccccee-EcceecCCCCEEEeehhhhccCCCCC-CCCCCcC
Q 011096          325 FHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQ-INGFDIPVKARVIVNAWAIGRDPEYW-TEPESFI  402 (493)
Q Consensus       325 ~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~-l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~  402 (493)
                      +      +++++.+||||+|||+||||+||++|... |.+.+|.. ++|+.|||||.|++++|++||||++| +||++|+
T Consensus       346 ~------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~  418 (500)
T PLN02169        346 F------DNEDLEKLVYLHAALSESMRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFK  418 (500)
T ss_pred             C------CHHHHhcCHHHHHHHHHHHhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcC
Confidence            4      57899999999999999999999999985 77666655 59999999999999999999999999 8999999


Q ss_pred             ccccccCCCCCC-CCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCcee
Q 011096          403 PERFLDHSVDYK-GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLC  481 (493)
Q Consensus       403 P~R~l~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      ||||+++++... .++..|+|||+|+|+|+|++||++|++++++.|+++|+|++.++..   +  ......+++|++++.
T Consensus       419 PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~---~--~~~~~~~l~~~~gl~  493 (500)
T PLN02169        419 PERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHK---I--EAIPSILLRMKHGLK  493 (500)
T ss_pred             ccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCC---c--ccccceEEecCCCEE
Confidence            999997644321 2367899999999999999999999999999999999999875432   2  334567789999999


Q ss_pred             EEeecc
Q 011096          482 MTPIPY  487 (493)
Q Consensus       482 ~~~~~r  487 (493)
                      +++++|
T Consensus       494 l~l~~~  499 (500)
T PLN02169        494 VTVTKK  499 (500)
T ss_pred             EEEEeC
Confidence            999987


No 23 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=1.1e-69  Score=531.16  Aligned_cols=433  Identities=21%  Similarity=0.334  Sum_probs=342.2

Q ss_pred             CCCCCCCCCCCCCCccccccccc----CCCCcchHHHHHhhcCC--eEEEecCCccEEEecCHHHHHHHHHhcCcccCCC
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGP--LMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASR  107 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~----~~~~~~~~~~~~~kyG~--v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~  107 (493)
                      ....+.||||+++|++|+++.+.    ..+++.++.+++++||+  +|++++++.++++++||+.+++++.++ ..|.++
T Consensus        38 ~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~  116 (490)
T PLN02302         38 EGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPG  116 (490)
T ss_pred             cCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccC
Confidence            34456789999999999988763    34678889999999997  799999999999999999999999865 345443


Q ss_pred             CCCchhhhhhcCCceeEeccCChhHHHHHHHHHhhhC-cHHHHhhcHHHHHHHHHHHHHHHHhhCCCceeeHHHHHHHHH
Q 011096          108 PHFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELL-SAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMY  186 (493)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~  186 (493)
                      ........+   +.+.+...+|+.|+++|+.+ .+.| +++.++.+.+.+.+.+.++++.+..  ++.+|+.+.+..+++
T Consensus       117 ~~~~~~~~~---g~~~~~~~~g~~w~~~R~~~-~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~--~~~v~~~~~~~~~~~  190 (490)
T PLN02302        117 WPESTVELI---GRKSFVGITGEEHKRLRRLT-AAPVNGPEALSTYIPYIEENVKSCLEKWSK--MGEIEFLTELRKLTF  190 (490)
T ss_pred             CchhHHHHh---ccccccccCcHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHHHHhcC--CCCEehHHHHHHHHH
Confidence            222222211   33445667899999999995 5666 5788999999999999999998863  345999999999999


Q ss_pred             HHHhhhhcCCCCccH-HHHHHHHHHHHHHhc----ccC---hHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCc
Q 011096          187 GITSRAAFGNRSRDQ-EAFVAVIEETTKVIS----GFN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDED  258 (493)
Q Consensus       187 ~~~~~~~fG~~~~~~-~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  258 (493)
                      +++++.+||.+.... +++...+..+...+.    ..+   .....+..+.+.+++.+.++++++......   .....|
T Consensus       191 ~vi~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~---~~~~~d  267 (490)
T PLN02302        191 KIIMYIFLSSESELVMEALEREYTTLNYGVRAMAINLPGFAYHRALKARKKLVALFQSIVDERRNSRKQNI---SPRKKD  267 (490)
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhCCcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCCcCC
Confidence            999999999876532 222222222211111    111   112234556677788888877765432211   114579


Q ss_pred             HHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCC----Cccccc
Q 011096          259 LVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT----GKVNET  334 (493)
Q Consensus       259 ~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~----~~~~~~  334 (493)
                      +++.+++..++++  ..++++++.+++..+++||+|||+++++|++++|++||++|+|+++|+++++++.    ..++++
T Consensus       268 ~l~~ll~~~~~~~--~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~  345 (490)
T PLN02302        268 MLDLLLDAEDENG--RKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLK  345 (490)
T ss_pred             HHHHHHhhhccCC--CCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            9999998754322  3489999999999999999999999999999999999999999999999998642    137889


Q ss_pred             cCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCCC
Q 011096          335 SIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYK  414 (493)
Q Consensus       335 ~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~  414 (493)
                      ++++||||+|||+|+||++|+++.. +|.+.+|++++|+.||||+.|.++.+++||||++|+||++|+||||+++..   
T Consensus       346 ~l~~lpyl~a~i~E~lRl~p~~~~~-~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~~---  421 (490)
T PLN02302        346 DVRKMEYLSQVIDETLRLINISLTV-FREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTP---  421 (490)
T ss_pred             HHhcChHHHHHHHHHHHhCCCcccc-hhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCCC---
Confidence            9999999999999999999999987 599999999999999999999999999999999999999999999997532   


Q ss_pred             CCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccCC
Q 011096          415 GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  489 (493)
Q Consensus       415 ~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  489 (493)
                       .+..++|||+|+|.|+|++||.+|++++++.|+++|+|++.++..    ++..  ...+.|+.++.+++.+|..
T Consensus       422 -~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~----~~~~--~~~~~p~~~~~~~~~~~~~  489 (490)
T PLN02302        422 -KAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGC----KVMY--LPHPRPKDNCLARITKVAS  489 (490)
T ss_pred             -CCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCC----ccee--CCCCCCCCCceEEEEeccC
Confidence             446799999999999999999999999999999999999875421    2222  2236788999999988753


No 24 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=9.3e-70  Score=533.89  Aligned_cols=426  Identities=22%  Similarity=0.371  Sum_probs=331.5

Q ss_pred             ccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhhhhcCCceeEeccC
Q 011096           49 IGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILSYNYRDIIFSSY  128 (493)
Q Consensus        49 iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (493)
                      +||+..+.++.++..+.+++++||+||++++++.++++|+||+.+++|+.++...|.+++........  .+ ..++..+
T Consensus       142 ~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~--~g-~~l~~~d  218 (633)
T PLN02738        142 KGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV--MG-KGLIPAD  218 (633)
T ss_pred             cCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc--cC-CceecCC
Confidence            35555554556778899999999999999999999999999999999999776666655332111111  13 3456778


Q ss_pred             ChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCCCceeeHHHHHHHHHHHHhhhhcCCCCcc---HHH
Q 011096          129 GDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRAAFGNRSRD---QEA  203 (493)
Q Consensus       129 g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~---~~~  203 (493)
                      |+.|+.+|+. +.+.|+...+..+.+.+.+.++.+++.+.+  ..++++|+.+.+..+++|+++.++||.+++.   .++
T Consensus       219 ge~wr~rRr~-l~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~  297 (633)
T PLN02738        219 GEIWRVRRRA-IVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTG  297 (633)
T ss_pred             cHHHHHHHHh-ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchH
Confidence            9999999999 689999999999999999999999999974  3567899999999999999999999998752   223


Q ss_pred             HHHHHHHHHHHh-----cccC---hH----------hHHHHHHHHHHHHHHHHHHHHHhhhhhcc-----CCCCCCCcHH
Q 011096          204 FVAVIEETTKVI-----SGFN---IA----------DVETLHQEGVRIVENIINEHKKRKATLKN-----CKTGDDEDLV  260 (493)
Q Consensus       204 ~~~~~~~~~~~~-----~~~~---~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~  260 (493)
                      +...+.......     ....   ..          ...+..+.+..++.++++..++.......     .....+.+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil  377 (633)
T PLN02738        298 IVEAVYTVLREAEDRSVSPIPVWEIPIWKDISPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSIL  377 (633)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhhhhhHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchHH
Confidence            333332222111     0000   00          01122333444445555443332211100     0011345799


Q ss_pred             HHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCccccccCCCCc
Q 011096          261 DVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKVNETSIDEMK  340 (493)
Q Consensus       261 ~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~  340 (493)
                      +.|+...      ..++++++.+++..+++||+|||+.+++|++++|++||++|+|||+||++++++ +.++++++++||
T Consensus       378 ~~Ll~~~------~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~-~~~t~edL~kLP  450 (633)
T PLN02738        378 HFLLASG------DDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGD-RFPTIEDMKKLK  450 (633)
T ss_pred             HHHHHcC------CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC-CCCCHHHHccCH
Confidence            9998653      238899999999999999999999999999999999999999999999999874 578899999999


Q ss_pred             cHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCC--CCCCCCc
Q 011096          341 FLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSV--DYKGTNF  418 (493)
Q Consensus       341 ~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~--~~~~~~~  418 (493)
                      ||+|||+|+|||+|+++.. +|.+.+|.+++||.||+||.|+++.+.+||||++||||++|+||||+.+..  .......
T Consensus       451 YL~AVIkEtLRL~p~~p~~-~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~  529 (633)
T PLN02738        451 YTTRVINESLRLYPQPPVL-IRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNF  529 (633)
T ss_pred             HHHHHHHHHHhcCCCcccc-ceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCC
Confidence            9999999999999999997 599999999999999999999999999999999999999999999985321  1123456


Q ss_pred             eeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccCCC
Q 011096          419 EYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHPS  490 (493)
Q Consensus       419 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  490 (493)
                      .|+|||.|+|.|+|++||++|++++|+.|+++|+|++.++.+  ++  ....+.++.++.++.+++++|...
T Consensus       530 ~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~--~~--~~~~~~~~~p~~~l~v~l~~R~~~  597 (633)
T PLN02738        530 SYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAP--PV--KMTTGATIHTTEGLKMTVTRRTKP  597 (633)
T ss_pred             ceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCC--Cc--ccccceEEeeCCCcEEEEEECCCC
Confidence            799999999999999999999999999999999999976642  22  223456778899999999999764


No 25 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=7.8e-70  Score=491.31  Aligned_cols=435  Identities=23%  Similarity=0.371  Sum_probs=354.6

Q ss_pred             CCCCCCCCCCccccccc---ccCCCCcchHHHHHhhcCCeEEEe-cCCccEEEecCHHHHHHHHHhcCcccCCCC-CCch
Q 011096           38 NPPPGPWKLPVIGNLYQ---LAGSLPHHGLRDLSKKYGPLMLLQ-LGEVPTIIVSSPEVAKEVMKTHDVVFASRP-HFPA  112 (493)
Q Consensus        38 ~~ppgp~~~p~iG~~~~---~~~~~~~~~~~~~~~kyG~v~~~~-~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~-~~~~  112 (493)
                      ...|+|+++|++|..+.   ..-.+.|+.+.+.+++||+||+.. +|+...|++.+|++++.++++++ .++.++ ....
T Consensus        50 ~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~~  128 (519)
T KOG0159|consen   50 EEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIEP  128 (519)
T ss_pred             hhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccch
Confidence            45688999999999883   223467788899999999999999 88899999999999999999764 445554 2211


Q ss_pred             hh--hhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhh-----CCCceeeHHHHHHHH
Q 011096          113 AQ--ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK-----AGSVINLTQNVHSLM  185 (493)
Q Consensus       113 ~~--~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-----~~~~vdl~~~~~~~~  185 (493)
                      ..  .-..++..+++..+|++|.+.|..+...+.+++.++.|.+.+++.+++++..+...     ...+.|+.+.+.+++
T Consensus       129 w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~ws  208 (519)
T KOG0159|consen  129 WVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWS  208 (519)
T ss_pred             hhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence            11  11233566788999999999999988889999999999999999999999988732     334679999999999


Q ss_pred             HHHHhhhhcCCCCcc--------HHHHHHHHHHHHHHhccc----------ChHh---HHHHHHHHHHHHHHHHHHHHHh
Q 011096          186 YGITSRAAFGNRSRD--------QEAFVAVIEETTKVISGF----------NIAD---VETLHQEGVRIVENIINEHKKR  244 (493)
Q Consensus       186 ~~~~~~~~fG~~~~~--------~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~~~i~~~~~~  244 (493)
                      ++.++.++||.+++.        .+.|++++..++......          ....   +.++.+.+.++.+++|+...++
T Consensus       209 lEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~l~~  288 (519)
T KOG0159|consen  209 LESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNALEE  288 (519)
T ss_pred             HHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhcchHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987652        346777777776544321          1111   2445555566666777766666


Q ss_pred             hhhhccCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 011096          245 KATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREV  324 (493)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~  324 (493)
                      .+...... .+.++.+-.++...       .++.+++..+++.+++||.|||+.|+.|+||+|++||++|++|++|+.++
T Consensus       289 l~~~~~~~-~~~~~~l~~~L~~~-------~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~  360 (519)
T KOG0159|consen  289 LEKQDSAG-SEYTGSLLELLLRK-------ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAV  360 (519)
T ss_pred             HHhccccc-cchhHHHHHHHHHc-------cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhh
Confidence            55432211 12233344433322       37899999999999999999999999999999999999999999999999


Q ss_pred             hcC-CCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCc
Q 011096          325 FHR-TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIP  403 (493)
Q Consensus       325 ~~~-~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P  403 (493)
                      ... +..++.+++.+||||.|||||||||||.++... |...+|..++||.|||||.|.++.+.+-+||++|++|++|+|
T Consensus       361 ~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~-R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~P  439 (519)
T KOG0159|consen  361 LPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNG-RVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLP  439 (519)
T ss_pred             CCCcccccchHHHhhCHHHHHHHHhhhceeccccccc-cccchhceeccceecCCCeEEEeehhhccChhhCCCccccCh
Confidence            987 577889999999999999999999999999995 999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEE
Q 011096          404 ERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMT  483 (493)
Q Consensus       404 ~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (493)
                      ||||+++. ...++..++|||.|+|+|+|+.||.+|+.++|+.++++|+++..+..     ++......++.|..++.++
T Consensus       440 eRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~-----pv~~~~~~il~P~~~l~f~  513 (519)
T KOG0159|consen  440 ERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEE-----PVEYVYRFILVPNRPLRFK  513 (519)
T ss_pred             hhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCC-----CccceeEEEEcCCCCccee
Confidence            99999873 24578899999999999999999999999999999999999987653     3344556677899999999


Q ss_pred             eeccC
Q 011096          484 PIPYH  488 (493)
Q Consensus       484 ~~~r~  488 (493)
                      +++|.
T Consensus       514 f~~r~  518 (519)
T KOG0159|consen  514 FRPRN  518 (519)
T ss_pred             eeeCC
Confidence            99986


No 26 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=4.6e-71  Score=540.87  Aligned_cols=414  Identities=32%  Similarity=0.589  Sum_probs=337.0

Q ss_pred             CCCCCCCCccccccccc-CCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhh-hh
Q 011096           40 PPGPWKLPVIGNLYQLA-GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI-LS  117 (493)
Q Consensus        40 ppgp~~~p~iG~~~~~~-~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~-~~  117 (493)
                      ||||+++|++||...+. .++++.++.+++++||+||+++++++++++|+||+.+++++.++...++.++....... ..
T Consensus         1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~   80 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG   80 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence            78999999999999985 36788889999999999999999999999999999999999987666665433322222 11


Q ss_pred             cCCceeEeccCChhHHHHHHHHHhhhCcHH-HHhhcHHHHHHHHHHHHHHHHhhCCC--ceeeHHHHHHHHHHHHhhhhc
Q 011096          118 YNYRDIIFSSYGDSWKQLRKICVSELLSAK-RVQSFQSIREAEVSDLINWISSKAGS--VINLTQNVHSLMYGITSRAAF  194 (493)
Q Consensus       118 ~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~l~~~~~~--~vdl~~~~~~~~~~~~~~~~f  194 (493)
                      ......++..+|+.|+.+|+. +.+.|+.. .+ .+.+.+.+.++.+++.|....+.  .+|+.+++..+++++++.++|
T Consensus        81 ~~~~~~l~~~~~~~~~~~R~~-~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~f  158 (463)
T PF00067_consen   81 PFGGKGLFFSDGERWRRQRRL-LAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLF  158 (463)
T ss_dssp             HHTTTSSTTSSHHHHHHHHHH-HHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence            113445667778999999999 46666666 66 89999999999999999865443  599999999999999999999


Q ss_pred             CCCCc---cH--HHHHHHHHHHHHHhcc--------------cChH---hHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011096          195 GNRSR---DQ--EAFVAVIEETTKVISG--------------FNIA---DVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (493)
Q Consensus       195 G~~~~---~~--~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (493)
                      |.+++   ..  .++.+.+..+...+..              ....   ...+..+.+.++++++++++++.....    
T Consensus       159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  234 (463)
T PF00067_consen  159 GKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLPTPLFRRFKRARDRLRKYIKEIIEERREELDDG----  234 (463)
T ss_dssp             SSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSS----
T ss_pred             cceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            99754   21  2344555444332210              0101   113344666677777777777665543    


Q ss_pred             CCCCCcHHHHHHhhh-ccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCcc
Q 011096          253 TGDDEDLVDVLLKIQ-GHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKV  331 (493)
Q Consensus       253 ~~~~~~~~~~ll~~~-~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~  331 (493)
                      .....|+++.++... +..+ ...++++++++++..+++||+|||+.+++|++++|++||++|+++++||+++.++++.+
T Consensus       235 ~~~~~d~l~~ll~~~~~~~~-~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~  313 (463)
T PF00067_consen  235 DESRRDLLDSLLQASSDSDG-PSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREI  313 (463)
T ss_dssp             SSSCSSHHHHHHHHHHTTTT-TSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSH
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            115789999999986 2221 13699999999999999999999999999999999999999999999999999777788


Q ss_pred             ccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCC
Q 011096          332 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSV  411 (493)
Q Consensus       332 ~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~  411 (493)
                      +.+++.+||||+|||+||||++|+++...+|.+.+|++++||.|||||.|.++.+.+|+||++|+||++|+||||++.+.
T Consensus       314 ~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~  393 (463)
T PF00067_consen  314 TFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERG  393 (463)
T ss_dssp             HHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999655799999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCC
Q 011096          412 DYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIK  460 (493)
Q Consensus       412 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~  460 (493)
                      .....+..|+|||+|+|.|||++||++|++++++.|+++||+++.++..
T Consensus       394 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~  442 (463)
T PF00067_consen  394 ISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSE  442 (463)
T ss_dssp             TBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSS
T ss_pred             ccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCC
Confidence            3334677899999999999999999999999999999999999976643


No 27 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=4.5e-69  Score=517.11  Aligned_cols=426  Identities=18%  Similarity=0.281  Sum_probs=331.3

Q ss_pred             CCCCCCCCCCCCccccccccc----CCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCc
Q 011096           36 ISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFP  111 (493)
Q Consensus        36 ~~~~ppgp~~~p~iG~~~~~~----~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~  111 (493)
                      +..+||||.++|++||++.+.    ..+++.++.+++++||++++++++++++++|+||+.+++++.++...|.++....
T Consensus        28 ~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~  107 (472)
T PLN02987         28 RMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPGS  107 (472)
T ss_pred             CCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcHH
Confidence            345788999999999998763    2467888999999999999999999999999999999999998777775543222


Q ss_pred             hhhhhhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHH-HHHHHHHHHHHHHHhhCCCceeeHHHHHHHHHHHHh
Q 011096          112 AAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQS-IREAEVSDLINWISSKAGSVINLTQNVHSLMYGITS  190 (493)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~~~  190 (493)
                      ....+   +.++++..+|+.|+++|+. +.++++...+..+.. .+.+.+...++.|.    +++++.+.+..+++++++
T Consensus       108 ~~~~l---g~~~l~~~~g~~wr~~R~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~t~~vi~  179 (472)
T PLN02987        108 ISNLL---GKHSLLLMKGNLHKKMHSL-TMSFANSSIIKDHLLLDIDRLIRFNLDSWS----SRVLLMEEAKKITFELTV  179 (472)
T ss_pred             HHHHh---CcccccccCcHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHhhc----cceehHHHHHHHHHHHHH
Confidence            22222   3344566689999999999 455555545444331 12233333444442    469999999999999999


Q ss_pred             hhhcCCCCcc-HHHHHHHHHHHHHHhcc--cC-----hHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHH
Q 011096          191 RAAFGNRSRD-QEAFVAVIEETTKVISG--FN-----IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDV  262 (493)
Q Consensus       191 ~~~fG~~~~~-~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  262 (493)
                      +++||.+..+ .+.+...+.........  .+     .....+..+.+.+++.++++++++....+.    ....|+++.
T Consensus       180 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~----~~~~d~l~~  255 (472)
T PLN02987        180 KQLMSFDPGEWTESLRKEYVLVIEGFFSVPLPLFSTTYRRAIQARTKVAEALTLVVMKRRKEEEEGA----EKKKDMLAA  255 (472)
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhhhhcCCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccC----cccccHHHH
Confidence            9999987643 22222222222211111  11     122355667777888888887765432211    135789999


Q ss_pred             HHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhc---CCCccccccCCCC
Q 011096          263 LLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH---RTGKVNETSIDEM  339 (493)
Q Consensus       263 ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~---~~~~~~~~~~~~l  339 (493)
                      |+....      .++++++++++.++++||+|||+.+++|++++|++||++|+++++|++++.+   +.+.++++++.+|
T Consensus       256 ll~~~~------~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~l  329 (472)
T PLN02987        256 LLASDD------GFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSM  329 (472)
T ss_pred             HHhcCC------CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcC
Confidence            997531      4899999999999999999999999999999999999999999999999875   2346788999999


Q ss_pred             ccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCCCCCCce
Q 011096          340 KFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNFE  419 (493)
Q Consensus       340 ~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~  419 (493)
                      ||++||++|+||++|+++.. +|.+.+|++++||.||+|+.|+++.+.+|+||++|++|++|+||||++++.. ......
T Consensus       330 pyl~a~i~EtLRl~p~~~~~-~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~  407 (472)
T PLN02987        330 PFTQCVVNETLRVANIIGGI-FRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNV  407 (472)
T ss_pred             hHHHHHHHHHHHccCCcCCc-cccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcc
Confidence            99999999999999999866 6999999999999999999999999999999999999999999999975432 223467


Q ss_pred             eeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccC
Q 011096          420 YIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  488 (493)
Q Consensus       420 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  488 (493)
                      ++|||+|+|.|+|++||++|++++++.|+++|+|++.++.+   +.    ...++.|.+++.+++++|.
T Consensus       408 ~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~----~~~~~~p~~~~~~~~~~r~  469 (472)
T PLN02987        408 FTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK---LV----FFPTTRTQKRYPINVKRRD  469 (472)
T ss_pred             eECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCc---ee----ecccccCCCCceEEEEecc
Confidence            99999999999999999999999999999999999875532   11    2347889999999999985


No 28 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.1e-68  Score=469.68  Aligned_cols=432  Identities=21%  Similarity=0.369  Sum_probs=341.6

Q ss_pred             CCCCCCCCCCcccccccccCCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhhhh
Q 011096           38 NPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILS  117 (493)
Q Consensus        38 ~~ppgp~~~p~iG~~~~~~~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~~~  117 (493)
                      +||-.-.++|++|++..+ +.+|..+++++++|||+||++.++|+.+.++.||+....+++++...++....+..... .
T Consensus        32 ~PPli~gwiP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~-~  109 (486)
T KOG0684|consen   32 EPPLIKGWIPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTT-P  109 (486)
T ss_pred             CCcccccCcchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhh-h
Confidence            454455679999999999 99999999999999999999999999999999999999999977544443322211111 1


Q ss_pred             cCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHH-HHhhCCCceeeHHHHHHHHHHHHhhhhcCC
Q 011096          118 YNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINW-ISSKAGSVINLTQNVHSLMYGITSRAAFGN  196 (493)
Q Consensus       118 ~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~  196 (493)
                      ..|++.+....+....++.+. ....+....++.+.+.+.+++.+.+.. |.+ +++.-.+.++...+.+.+.-..++|.
T Consensus       110 vFg~~v~~d~~~~~~~e~~~~-~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~-s~~~d~l~~~~~~ii~tAs~~ll~~e  187 (486)
T KOG0684|consen  110 VFGKGVVYDVPNHVMMEQKKF-FKSALGGVALKSLVELMLEELHAYFETSLGE-SGETDGLYTFCRLIIFTASRLLLGGE  187 (486)
T ss_pred             hcCCCccccCCCchHHHHHHH-HHHHhchhhHHHHHHHHHHHHHHHHhccccc-ccchhHhhhhhHHHhhhhHHHhhhhh
Confidence            225566666667777888887 567778888999999999999888876 544 55666677777777777766666665


Q ss_pred             CCcc-HHHHHHHHHHHHHH-------hc-ccChH---hHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHH
Q 011096          197 RSRD-QEAFVAVIEETTKV-------IS-GFNIA---DVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLL  264 (493)
Q Consensus       197 ~~~~-~~~~~~~~~~~~~~-------~~-~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ll  264 (493)
                      .... +++....+.++...       +. +++..   ...++++.+.+.+...+.++++..+.       .+.|.++.++
T Consensus       188 ~r~~~d~~~a~l~~dLd~~F~~~d~~FP~~LP~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~-------~~~dmlq~l~  260 (486)
T KOG0684|consen  188 VRDQLDADVAKLYHDLDQGFQPFDFLFPYNLPIPLLRRRDRARKKISKIFSKIILDRRASISK-------WDNDMLQSLM  260 (486)
T ss_pred             hhhhhcchHHHHHHHHhccccchHhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHH
Confidence            4432 22333333333322       22 22222   22566777777777777777665432       4568888888


Q ss_pred             hhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCc-cccccCCCCccHH
Q 011096          265 KIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGK-VNETSIDEMKFLK  343 (493)
Q Consensus       265 ~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~-~~~~~~~~l~~l~  343 (493)
                      +-.+++   ...+++|+...++.+++||+.|++.|.+|++++|++|||+++.+++|+.++++++.. ++++.+++||.|+
T Consensus       261 ~~y~dg---~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~  337 (486)
T KOG0684|consen  261 EKYKDG---RPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLD  337 (486)
T ss_pred             HHhhcC---CcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHH
Confidence            732222   468999999999999999999999999999999999999999999999999987654 9999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCccccccceeEcc----eecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCC----CC
Q 011096          344 LVVKETLRLHPAAPLLIPRECGQRCQING----FDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDY----KG  415 (493)
Q Consensus       344 a~i~E~lRl~~~~~~~~~R~~~~~~~l~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~----~~  415 (493)
                      +||+|||||+||.+... |.+.+|+++.+    |.||+|..|.++.+.+|+||++|++|++|+|+||+.+.+..    +.
T Consensus       338 ~~IkEtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~k  416 (486)
T KOG0684|consen  338 SCIKETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEK  416 (486)
T ss_pred             HHHHHHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCccccccccc
Confidence            99999999999999886 99999999955    99999999999999999999999999999999999765442    22


Q ss_pred             CCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccC
Q 011096          416 TNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  488 (493)
Q Consensus       416 ~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  488 (493)
                      -.+.+||||+|.|.|||++||.+|+++++..+|+.||+++.++ +.+.+++...   ++.|..++.|+.+.|.
T Consensus       417 l~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~-~~P~~d~s~~---v~~P~g~v~irYK~R~  485 (486)
T KOG0684|consen  417 LDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG-PFPEVDYSRM---VMQPEGDVRIRYKRRP  485 (486)
T ss_pred             ccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC-CCCCCCHHHh---hcCCCCCceEEEeecC
Confidence            3445799999999999999999999999999999999999987 3344444433   6789999999999885


No 29 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=8.8e-68  Score=513.43  Aligned_cols=434  Identities=22%  Similarity=0.349  Sum_probs=341.3

Q ss_pred             CCCCCCCCccccccccc----CCCCcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhh
Q 011096           40 PPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI  115 (493)
Q Consensus        40 ppgp~~~p~iG~~~~~~----~~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~  115 (493)
                      =.|-.+||++|..+.+.    ++.++..+.+|+++||++|++++++.++++++||+++++|+.+....|.+++.......
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~   93 (489)
T PLN02936         14 WGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEF   93 (489)
T ss_pred             CCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHH
Confidence            35778999999988664    46788899999999999999999999999999999999999876666766543222111


Q ss_pred             hhcCCceeEeccCChhHHHHHHHHHhhhCcHHHHhhcHH-HHHHHHHHHHHHHHhh--CCCceeeHHHHHHHHHHHHhhh
Q 011096          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQS-IREAEVSDLINWISSK--AGSVINLTQNVHSLMYGITSRA  192 (493)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~  192 (493)
                      .  .+ ..++..+|+.|+.+||. +.+.|+...+..+.+ .+.++++.+++.+.+.  .++++|+.+++..+++++++.+
T Consensus        94 ~--~~-~~i~~~~g~~wk~~Rk~-l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~  169 (489)
T PLN02936         94 L--FG-SGFAIAEGELWTARRRA-VVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLS  169 (489)
T ss_pred             H--hc-CccccCCchHHHHHHHh-hcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHH
Confidence            1  13 34566789999999999 688888888887654 6788889999988643  4578999999999999999999


Q ss_pred             hcCCCCccH---HHHHHHHHHHHHHhc-----ccC----------h---HhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 011096          193 AFGNRSRDQ---EAFVAVIEETTKVIS-----GFN----------I---ADVETLHQEGVRIVENIINEHKKRKATLKNC  251 (493)
Q Consensus       193 ~fG~~~~~~---~~~~~~~~~~~~~~~-----~~~----------~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  251 (493)
                      +||.+++..   .++.+.+........     ..+          .   ....++.+.+.+++.++++++++..+.....
T Consensus       170 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~  249 (489)
T PLN02936        170 VFNYNFDSLTTDSPVIQAVYTALKEAETRSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGEV  249 (489)
T ss_pred             HcCCCccccccCcHHHHHHHHHHHHHHHhhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            999987531   233333322211110     000          0   0123344556677777777766543321110


Q ss_pred             C------CCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhh
Q 011096          252 K------TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVF  325 (493)
Q Consensus       252 ~------~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~  325 (493)
                      .      .....++++.|+...+      .++++++.+++.++++||+|||+++++|++++|++||++|+++|+|+++++
T Consensus       250 ~~~~~~~~~~~~d~l~~ll~~~~------~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~  323 (489)
T PLN02936        250 IEGEEYVNDSDPSVLRFLLASRE------EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVL  323 (489)
T ss_pred             cccccccccCchHHHHHHHhccc------cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            0      0124678998886532      378999999999999999999999999999999999999999999999998


Q ss_pred             cCCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEeehhhhccCCCCCCCCCCcCccc
Q 011096          326 HRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPER  405 (493)
Q Consensus       326 ~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R  405 (493)
                      ++ +.++++++++||||+|||+||||++|+++...+|.+.+|+.++|+.||+|+.|+++.+.+||||++|+||++|+|||
T Consensus       324 ~~-~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR  402 (489)
T PLN02936        324 QG-RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPER  402 (489)
T ss_pred             cC-CCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccc
Confidence            75 45788999999999999999999999999887676678888899999999999999999999999999999999999


Q ss_pred             cccCCCC--CCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEE
Q 011096          406 FLDHSVD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMT  483 (493)
Q Consensus       406 ~l~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (493)
                      |++++..  ....+..++|||+|+|.|+|++||++|++++++.|+++|++++.++.+   +  ....+.++.++.++.|+
T Consensus       403 wl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~---~--~~~~~~~~~~~~~~~v~  477 (489)
T PLN02936        403 FDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQD---I--VMTTGATIHTTNGLYMT  477 (489)
T ss_pred             cCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCc---c--ceecceEEeeCCCeEEE
Confidence            9965321  122345799999999999999999999999999999999999876532   2  22235667788999999


Q ss_pred             eeccCC
Q 011096          484 PIPYHP  489 (493)
Q Consensus       484 ~~~r~~  489 (493)
                      ++||..
T Consensus       478 ~~~R~~  483 (489)
T PLN02936        478 VSRRRV  483 (489)
T ss_pred             EEeeeC
Confidence            999876


No 30 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=1.5e-65  Score=496.54  Aligned_cols=419  Identities=19%  Similarity=0.253  Sum_probs=323.1

Q ss_pred             CCcccccccccCCCCcchHHHHHhhcC-CeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCchhhhhhcCCceeE
Q 011096           46 LPVIGNLYQLAGSLPHHGLRDLSKKYG-PLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILSYNYRDII  124 (493)
Q Consensus        46 ~p~iG~~~~~~~~~~~~~~~~~~~kyG-~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (493)
                      .++.|++... ..+...++..+.++++ .+++++..+.  ++++||+.+++++.++...|.+...+..... ...+ +++
T Consensus        49 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~-~~~g-~gi  123 (502)
T PLN02426         49 AYLTASWAKD-FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILG-DLLG-RGI  123 (502)
T ss_pred             CCccHHHHHh-cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHH-HhcC-Cce
Confidence            5577888664 2345677777888887 5788876664  8999999999999877666665433321110 1113 346


Q ss_pred             eccCChhHHHHHHHHHhhhCcHHHHhhcH--HHHHHHHHHHHHHHHhh----CCCceeeHHHHHHHHHHHHhhhhcCCCC
Q 011096          125 FSSYGDSWKQLRKICVSELLSAKRVQSFQ--SIREAEVSDLINWISSK----AGSVINLTQNVHSLMYGITSRAAFGNRS  198 (493)
Q Consensus       125 ~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~----~~~~vdl~~~~~~~~~~~~~~~~fG~~~  198 (493)
                      ++.+|+.|+.+||. +++.|+...++.+.  +.+.+..+.+++.+.+.    .+.++|+.+++..+++|+++.++||.++
T Consensus       124 ~~~~g~~wk~~Rk~-l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~  202 (502)
T PLN02426        124 FNVDGDSWRFQRKM-ASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDP  202 (502)
T ss_pred             eecCcHHHHHHHHH-hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCC
Confidence            77889999999999 68899988888763  56666677777766531    2467999999999999999999999886


Q ss_pred             cc------HHHHHHHHHHHHHHh-----cccC-h------------HhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 011096          199 RD------QEAFVAVIEETTKVI-----SGFN-I------------ADVETLHQEGVRIVENIINEHKKRKATLKNCKTG  254 (493)
Q Consensus       199 ~~------~~~~~~~~~~~~~~~-----~~~~-~------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  254 (493)
                      +.      ..++.+.+..+....     .... .            ....+..+.+.+++.++++++++...       .
T Consensus       203 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~-------~  275 (502)
T PLN02426        203 GCLELSLPISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGF-------S  275 (502)
T ss_pred             cccCCCCCccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhccc-------C
Confidence            42      234555444432211     0000 0            11234455566666677766654311       1


Q ss_pred             CCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCC-Ccccc
Q 011096          255 DDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT-GKVNE  333 (493)
Q Consensus       255 ~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~-~~~~~  333 (493)
                      ...|+++.+++..        .+++++.+++.++++||+|||+++++|++|+|++||++|+|+++||+++.+++ ..+++
T Consensus       276 ~~~dll~~ll~~~--------~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~  347 (502)
T PLN02426        276 ASKDLLSRFMASI--------NDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASF  347 (502)
T ss_pred             CcchHHHHHHhcC--------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCH
Confidence            3578999999753        26789999999999999999999999999999999999999999999988753 36889


Q ss_pred             ccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeE-cceecCCCCEEEeehhhhccCCCCC-CCCCCcCccccccCCC
Q 011096          334 TSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGRDPEYW-TEPESFIPERFLDHSV  411 (493)
Q Consensus       334 ~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~  411 (493)
                      +++++||||+|||+|+||++|+++... |.+.+|..+ +|+.||+||.|.++.+.+||||++| +||++|+||||+++..
T Consensus       348 ~~l~~LpYl~avi~EtLRl~p~v~~~~-r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~  426 (502)
T PLN02426        348 EEMKEMHYLHAALYESMRLFPPVQFDS-KFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGV  426 (502)
T ss_pred             HHHhcChHHHHHHHHHHhCCCCCCCcc-eeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCC
Confidence            999999999999999999999999884 999988777 9999999999999999999999999 9999999999997432


Q ss_pred             CCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhcceeeCCCCCCCCCCCcccccCeeeccCCceeEEeeccCC
Q 011096          412 DYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  489 (493)
Q Consensus       412 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  489 (493)
                      .....+..++|||+|+|.|+|++||++|++++++.|+++|++++.++.. .  ......+.++++++++.|++++|+.
T Consensus       427 ~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~-~--~~~~~~~~~~~~~~gl~v~~~~r~~  501 (502)
T PLN02426        427 FVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSN-R--APRFAPGLTATVRGGLPVRVRERVR  501 (502)
T ss_pred             cCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCC-C--CCcccceeEEecCCCEEEEEEEccC
Confidence            1122456799999999999999999999999999999999999864422 1  1223346788999999999999864


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=4.2e-61  Score=458.00  Aligned_cols=407  Identities=15%  Similarity=0.211  Sum_probs=298.2

Q ss_pred             CCCCCCCCCCCCCCccccccccc----CCCCcchHHHHHhhcCC-eEEEecCCccE-------EEecCHHHHHHHHHh--
Q 011096           34 NRISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGP-LMLLQLGEVPT-------IIVSSPEVAKEVMKT--   99 (493)
Q Consensus        34 ~~~~~~ppgp~~~p~iG~~~~~~----~~~~~~~~~~~~~kyG~-v~~~~~~~~~~-------vvv~dp~~i~~i~~~--   99 (493)
                      ..+.+.|||+.++|++|+..++.    ..++..++.+.++|||+ ||+++++|.++       |+++||+.++.+|.+  
T Consensus        13 ~~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~   92 (480)
T PLN02648         13 SLPLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSK   92 (480)
T ss_pred             CCCCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchh
Confidence            34556789999999999997543    45667999999999998 99999999666       999999999999985  


Q ss_pred             --cCcccCCCCCCchhhhhhcCCce---eEeccCChhHHHHHHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHh--hCC
Q 011096          100 --HDVVFASRPHFPAAQILSYNYRD---IIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAG  172 (493)
Q Consensus       100 --~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~w~~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~  172 (493)
                        ++..+...... ....+   |.+   .++..+|+.|+++||+ +.+.|++ .++.+.+.+.+.+.++++.|..  ..+
T Consensus        93 ~~~~~~~~~~~~~-~~~l~---G~~~~~s~~~~~g~~H~r~Rrl-l~~~f~~-~~~~~~~~m~~~~~~~~~~w~~~~~~~  166 (480)
T PLN02648         93 VDKRDVFTGTYMP-STAFT---GGYRVLSYLDPSEPKHAKLKSF-LFELLKS-RHRRFIPEFRAAFAELFDTWEAELAKK  166 (480)
T ss_pred             ccccccceeeecc-Ccccc---CCceeeeecCCCCchHHHHHHH-HHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhhC
Confidence              33333332111 11222   334   6777889999999999 5788884 6688999999999999999964  244


Q ss_pred             CceeeHHHHHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011096          173 SVINLTQNVHSLMYGITSRAAFGNRSRDQEAFVAVIEETTKVISGFNIADVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (493)
Q Consensus       173 ~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (493)
                      +.+|+.+.+..++++++++++||.+.+. +.+.+.+..+............  ....+...+++++.++.........  
T Consensus       167 ~~vdv~~~~~~lt~~vi~~~lfG~~~~~-~~l~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~~~i~~~~~~~~~~~~--  241 (480)
T PLN02648        167 GKAEFNDPLDQMAFNFLCKALTGKDPSE-TALGSDGPALIQKWLALQLAPL--ASTGLPHVLEELLLHTFPLPFFLVK--  241 (480)
T ss_pred             CCccccchHHHHHHHHHHHHHcCCCcch-hhhccchhHHHHHHHHHHhhHH--HHcCchHHHHHHhhcccCCchhhhh--
Confidence            5699999999999999999999987654 2122211111111100000000  0011111222221111000000000  


Q ss_pred             CCCCCc-------HHHHHHhhhccCCCCCcccHHHHHHHHHH-HhhcCccchHHHHHHHHHHHhhCcH-HHHHHHHHHHH
Q 011096          253 TGDDED-------LVDVLLKIQGHGDLDSFLTTDHIKAVISD-IFAAGSETSATTVDWAMCEMMKNPR-VMKKAQAEVRE  323 (493)
Q Consensus       253 ~~~~~~-------~~~~ll~~~~~~~~~~~~~~~~i~~~~~~-~~~ag~~tt~~~l~~~l~~L~~~p~-~~~~l~~Ei~~  323 (493)
                       ....+       ..+.++....+    ..+++++++++++. +.+++++||+++++|++|+|++||+ +|+++++|+++
T Consensus       242 -~~~~~~~~~~~~~~~~ll~~~~~----~~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~  316 (480)
T PLN02648        242 -SDYDKLYDFFRASATEALDLAEK----FGISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRS  316 (480)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             01111       22344443322    23899999999875 4467788888899999999999995 99999999999


Q ss_pred             hhcC-CCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeEc----ceecCCCCEEEeehhhhccCCCCCCCC
Q 011096          324 VFHR-TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQIN----GFDIPVKARVIVNAWAIGRDPEYWTEP  398 (493)
Q Consensus       324 ~~~~-~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~----g~~ip~g~~v~~~~~~~~~d~~~~~~p  398 (493)
                      +.+. .+.++++++++||||++||+|+||++|+++... |++.+|++++    ||.||||+.|+++.+.+||||++|+||
T Consensus       317 ~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~-r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP  395 (480)
T PLN02648        317 AVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQY-GRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRP  395 (480)
T ss_pred             HhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCccccc-ceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCc
Confidence            9863 456899999999999999999999999999985 8899999996    799999999999999999999999999


Q ss_pred             CCcCccccccCCCCCCCCCceeeec---------CCCCCCCcChhhHHHHhHHHHHHhhhcce-eeCCCCCC
Q 011096          399 ESFIPERFLDHSVDYKGTNFEYIPF---------GAGRRICPGMSFGLASVELPLAMLLYHFD-WKLPNGIK  460 (493)
Q Consensus       399 ~~F~P~R~l~~~~~~~~~~~~~~~F---------g~G~r~C~G~~~A~~~~~~~l~~ll~~f~-~~~~~~~~  460 (493)
                      ++|||+||++++..   ....+++|         |+|+|.|+|++||++|++++++.|+++|+ |++.++..
T Consensus       396 ~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~  464 (480)
T PLN02648        396 EEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDTS  464 (480)
T ss_pred             ceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCcc
Confidence            99999999875322   11234444         67789999999999999999999999998 99976643


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=1.1e-56  Score=423.28  Aligned_cols=355  Identities=23%  Similarity=0.382  Sum_probs=299.1

Q ss_pred             CcchHHHHHhhcCCeEEEecCCcc--EEEecCHHHHHHHHHhcCcccCCCCCCchhh--hhhcCCceeEeccCChhHHHH
Q 011096           60 PHHGLRDLSKKYGPLMLLQLGEVP--TIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ--ILSYNYRDIIFSSYGDSWKQL  135 (493)
Q Consensus        60 ~~~~~~~~~~kyG~v~~~~~~~~~--~vvv~dp~~i~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~w~~~  135 (493)
                      +......+.+.||.++++...+..  +++++++++++++++++. .+++........  .....+...++..+|+.|.++
T Consensus        24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~  102 (411)
T COG2124          24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL  102 (411)
T ss_pred             hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHH
Confidence            445566788889988888876654  899999999999999774 222222111110  112224444788899999999


Q ss_pred             HHHHHhhhCcHHHHhhcHHHHHHHHHHHHHHHHhhCCCceeeHHHHHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHHh
Q 011096          136 RKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAAFGNRSRDQEAFVAVIEETTKVI  215 (493)
Q Consensus       136 Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~  215 (493)
                      ||. +.+.|+++.++.+.+.+.+.+.++++.+ ... +..++.+.+..++.++++ .+||.+..+...+..+........
T Consensus       103 Rkl-~~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~~-~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~~~~~~~~~~~~~~~  178 (411)
T COG2124         103 RKL-LAPAFTPRALRGYRPLIREIADRLLDDL-WQG-GADLVLDFAAELTLRVIA-ELLGVPLEDRPQLLRWSDALLLRL  178 (411)
T ss_pred             HHH-hccccCHHHHHHHHHHHHHHHHHHHHhc-ccC-CchhHHHHhhhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHhcc
Confidence            999 7899999999999999999999999988 444 677888999999999999 999999988776666666665542


Q ss_pred             c-----ccChHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHhhhccCCCCCcccHHHHHHHHHHHhh
Q 011096          216 S-----GFNIADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKAVISDIFA  290 (493)
Q Consensus       216 ~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~  290 (493)
                      .     ........++...+.+++.++|++++..          +.+|+++.|+.+.++++  ..+|++|+.++++++++
T Consensus       179 ~~~~~~~~~~~~~~~a~~~~~~~~~~li~~rR~~----------~~~dlls~l~~a~~~~~--~~lsd~Ei~~~~~~ll~  246 (411)
T COG2124         179 DPDLGPEEPWRRARAARRELDAYLRALIAERRAA----------PRDDLLSLLLSAEDDGG--GRLSDDEIRDELITLLV  246 (411)
T ss_pred             CcccCCcccHHHHHHHHHHHHHHHHHHHHHhccC----------CcccHHHHHHHHhhCCC--CcCCHHHHHHHHHHHHH
Confidence            1     1113334778889999999999988821          67899999999887653  25999999999999999


Q ss_pred             cCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhhcCCCccccccCCCCccHHHHHHhhcCCCCCCCCCCccccccceeE
Q 011096          291 AGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI  370 (493)
Q Consensus       291 ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l  370 (493)
                      ||+|||+++++|+++.|++||++++++++|.+.                ||+.++|+|+||++||++. .+|.+.+|+++
T Consensus       247 AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~----------------~~~~~~v~E~LR~~ppv~~-~~R~~~~d~~i  309 (411)
T COG2124         247 AGHETTANALAWALYALLRHPDQLAKLRAEPDR----------------PLLEAVVEETLRLYPPVPL-ARRVATEDVEL  309 (411)
T ss_pred             hhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch----------------HHHHHHHHHHHHhCCchhc-cceeccCCEee
Confidence            999999999999999999999999999997653                8999999999999999999 57999999999


Q ss_pred             cceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCCCCCCceeeecCCCCCCCcChhhHHHHhHHHHHHhhhc
Q 011096          371 NGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYH  450 (493)
Q Consensus       371 ~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~  450 (493)
                      +|+.||+|+.|+++++++||||++|++|++|||+||.          ..|+|||+|+|.|+|+.||++|++++++.++++
T Consensus       310 gg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r  379 (411)
T COG2124         310 GGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRR  379 (411)
T ss_pred             CCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999995          479999999999999999999999999999999


Q ss_pred             ceeeCCCC
Q 011096          451 FDWKLPNG  458 (493)
Q Consensus       451 f~~~~~~~  458 (493)
                      |++....+
T Consensus       380 ~~~~~~~~  387 (411)
T COG2124         380 FPLLLLAE  387 (411)
T ss_pred             CchhhcCC
Confidence            99888665


No 33 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=72.34  E-value=2.3  Score=27.34  Aligned_cols=7  Identities=57%  Similarity=0.904  Sum_probs=5.6

Q ss_pred             Ccccccc
Q 011096          402 IPERFLD  408 (493)
Q Consensus       402 ~P~R~l~  408 (493)
                      ||||||.
T Consensus        44 DPERWLP   50 (59)
T PF08492_consen   44 DPERWLP   50 (59)
T ss_pred             CccccCc
Confidence            7888885


No 34 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=70.32  E-value=17  Score=22.27  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHH
Q 011096          280 HIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEV  321 (493)
Q Consensus       280 ~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei  321 (493)
                      ++..++..++-.|.|..+-+++-.+...--||+.++.+..|+
T Consensus         6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            566777788888999888888888888888999999998886


No 35 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=56.92  E-value=11  Score=24.05  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=15.8

Q ss_pred             HHHHHhhCcHHHHHHHHH
Q 011096          303 AMCEMMKNPRVMKKAQAE  320 (493)
Q Consensus       303 ~l~~L~~~p~~~~~l~~E  320 (493)
                      ++.||.+||++.+++.+.
T Consensus         5 iV~YLv~nPevl~kl~~g   22 (57)
T PF05952_consen    5 IVNYLVQNPEVLEKLKEG   22 (57)
T ss_pred             HHHHHHHChHHHHHHHcC
Confidence            568999999999999873


No 36 
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=56.18  E-value=21  Score=22.23  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=14.8

Q ss_pred             CccchhhHhHHHHHHHHHHHHHHHHH
Q 011096            1 MELLGLSTTSSILLAILLSALAVLKL   26 (493)
Q Consensus         1 m~~~~~~~~~~~~~~l~~~~~~~~~~   26 (493)
                      |+.+.+.+..+++++++.+++.+|.+
T Consensus         1 M~il~~LIpiSl~l~~~~l~~f~Wav   26 (51)
T TIGR00847         1 MEILTILIPISLLLGGVGLVAFLWSL   26 (51)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666665555555545444


No 37 
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=52.02  E-value=79  Score=30.51  Aligned_cols=47  Identities=17%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             CcchHHHH-HhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCC
Q 011096           60 PHHGLRDL-SKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFAS  106 (493)
Q Consensus        60 ~~~~~~~~-~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~~~~~~~  106 (493)
                      +.+.++-. .-+||.|++-.+.++.+-|=.=|..-++=+.+....|+.
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~l  258 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSL  258 (534)
T ss_pred             chhhHHHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhc
Confidence            33444332 347888888777666544433344334444444445543


No 38 
>PF01102 Glycophorin_A:  Glycophorin A;  InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.15  E-value=38  Score=25.85  Aligned_cols=18  Identities=11%  Similarity=0.049  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 011096           14 LAILLSALAVLKLEKRSQ   31 (493)
Q Consensus        14 ~~l~~~~~~~~~~~~~~~   31 (493)
                      ++++.+.++++++.+|.+
T Consensus        75 aGvIg~Illi~y~irR~~   92 (122)
T PF01102_consen   75 AGVIGIILLISYCIRRLR   92 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            333333344444444443


No 39 
>PF10717 ODV-E18:  Occlusion-derived virus envelope protein ODV-E18;  InterPro: IPR019655  Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=43.96  E-value=66  Score=22.32  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=12.6

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHh
Q 011096            6 LSTTSSILLAILLSALAVLKLEK   28 (493)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~   28 (493)
                      ..+...++++++++.++++++-.
T Consensus        24 pn~lMtILivLVIIiLlImlfqs   46 (85)
T PF10717_consen   24 PNTLMTILIVLVIIILLIMLFQS   46 (85)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhc
Confidence            34455556666666655555533


No 40 
>PF05393 Hum_adeno_E3A:  Human adenovirus early E3A glycoprotein;  InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=43.62  E-value=52  Score=23.01  Aligned_cols=21  Identities=5%  Similarity=-0.007  Sum_probs=9.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHH
Q 011096            7 STTSSILLAILLSALAVLKLE   27 (493)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~   27 (493)
                      .++...+++++++++++|++.
T Consensus        34 gm~~lvI~~iFil~VilwfvC   54 (94)
T PF05393_consen   34 GMWFLVICGIFILLVILWFVC   54 (94)
T ss_pred             chhHHHHHHHHHHHHHHHHHH
Confidence            344444445544444444444


No 41 
>PRK06789 flagellar motor switch protein; Validated
Probab=42.17  E-value=28  Score=23.76  Aligned_cols=40  Identities=8%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             HHHhhcCCCCCCCCCCccccccce--eEcceecCCCCEEEee
Q 011096          345 VVKETLRLHPAAPLLIPRECGQRC--QINGFDIPVKARVIVN  384 (493)
Q Consensus       345 ~i~E~lRl~~~~~~~~~R~~~~~~--~l~g~~ip~g~~v~~~  384 (493)
                      -++|-|.|.+....-.-|.+.+++  .++|..|.+|..|.++
T Consensus        21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~   62 (74)
T PRK06789         21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN   62 (74)
T ss_pred             EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence            378899999987776667777754  4599999999998775


No 42 
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl    5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and    metabolism]
Probab=39.57  E-value=39  Score=30.48  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=43.2

Q ss_pred             HHHHHHhhcCCCCCCC---CCCccccccceeEc----ceecCCCCEEEeehhhhccCCCCCCCCCCcCccccccCCCCCC
Q 011096          342 LKLVVKETLRLHPAAP---LLIPRECGQRCQIN----GFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYK  414 (493)
Q Consensus       342 l~a~i~E~lRl~~~~~---~~~~R~~~~~~~l~----g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~  414 (493)
                      -+.+++.|-.+.||..   +++--.++.|..+=    .-+|..||.|.++ .                            
T Consensus       275 ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTNv~~~-G----------------------------  325 (361)
T COG1759         275 GERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTNVYMG-G----------------------------  325 (361)
T ss_pred             HHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEeccccCCcccccC-C----------------------------
Confidence            4567888889999854   44333334454331    2467788877554 1                            


Q ss_pred             CCCceeeecCCCCCCCcChhhHHHHhHHHH
Q 011096          415 GTNFEYIPFGAGRRICPGMSFGLASVELPL  444 (493)
Q Consensus       415 ~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l  444 (493)
                       +++.++-||-+  +-.|+.+|. |++.++
T Consensus       326 -spYs~l~~~~p--ms~GrRIA~-EIk~A~  351 (361)
T COG1759         326 -SPYSNLYWGEP--MSTGRRIAR-EIKEAI  351 (361)
T ss_pred             -CcchhhhcCCC--cchhhHHHH-HHHHHH
Confidence             33445555555  668999998 776654


No 43 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=38.77  E-value=28  Score=26.83  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=17.2

Q ss_pred             CCCcChhhHHHHhHHHHHHhhhcc
Q 011096          428 RICPGMSFGLASVELPLAMLLYHF  451 (493)
Q Consensus       428 r~C~G~~~A~~~~~~~l~~ll~~f  451 (493)
                      ..|.|++||...+-.++..|+..-
T Consensus        18 yN~~gKKFsE~QiN~FIs~lItsP   41 (148)
T PF09201_consen   18 YNCLGKKFSETQINAFISHLITSP   41 (148)
T ss_dssp             EETTS----HHHHHHHHHHHHHS-
T ss_pred             ecccchHHHHHHHHHHHHHHhcCC
Confidence            379999999999999999999753


No 44 
>PF07886 BA14K:  BA14K-like protein;  InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process []. 
Probab=38.27  E-value=27  Score=19.10  Aligned_cols=16  Identities=31%  Similarity=0.779  Sum_probs=13.2

Q ss_pred             CCceeeecCCCCCCCc
Q 011096          416 TNFEYIPFGAGRRICP  431 (493)
Q Consensus       416 ~~~~~~~Fg~G~r~C~  431 (493)
                      ....|+|++|..|.|.
T Consensus        16 ~~~Ty~~~~G~r~~C~   31 (31)
T PF07886_consen   16 RDNTYQPYDGPRRFCR   31 (31)
T ss_pred             CCCcEeCCCCccccCc
Confidence            4567999999999994


No 45 
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=37.86  E-value=31  Score=24.59  Aligned_cols=14  Identities=14%  Similarity=0.506  Sum_probs=8.9

Q ss_pred             CccchhhHhHHHHH
Q 011096            1 MELLGLSTTSSILL   14 (493)
Q Consensus         1 m~~~~~~~~~~~~~   14 (493)
                      |+|+.+.+.-++++
T Consensus         1 m~mF~iG~~ElliI   14 (90)
T PRK14857          1 MNIFGIGLPEMAVI   14 (90)
T ss_pred             CCcccccHHHHHHH
Confidence            77887776655443


No 46 
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=36.46  E-value=53  Score=20.97  Aligned_cols=26  Identities=27%  Similarity=0.240  Sum_probs=13.5

Q ss_pred             CccchhhHhHHHHHHHHHHHHHHHHH
Q 011096            1 MELLGLSTTSSILLAILLSALAVLKL   26 (493)
Q Consensus         1 m~~~~~~~~~~~~~~l~~~~~~~~~~   26 (493)
                      |+.+.+.+..+++++.+.+...+|.+
T Consensus         1 m~~l~~Lipvsi~l~~v~l~~flWav   26 (58)
T COG3197           1 MEILYILIPVSILLGAVGLGAFLWAV   26 (58)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHHHhc
Confidence            56665565555555444444444433


No 47 
>PF11138 DUF2911:  Protein of unknown function (DUF2911);  InterPro: IPR021314  This bacterial family of proteins has no known function. 
Probab=36.27  E-value=45  Score=26.37  Aligned_cols=39  Identities=13%  Similarity=0.319  Sum_probs=26.6

Q ss_pred             ccceeEcceecCCCCEEEeehhh-------hccCCCCCCCCCCcCcc
Q 011096          365 GQRCQINGFDIPVKARVIVNAWA-------IGRDPEYWTEPESFIPE  404 (493)
Q Consensus       365 ~~~~~l~g~~ip~g~~v~~~~~~-------~~~d~~~~~~p~~F~P~  404 (493)
                      .+|+.++|..||+|++-+..+..       +|++...|.. ..+||+
T Consensus        53 ~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~-~~Y~~~   98 (145)
T PF11138_consen   53 SKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA-YNYDPS   98 (145)
T ss_pred             CCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc-cccCch
Confidence            46889999999999987766543       4566666644 344443


No 48 
>PF12444 Sox_N:  Sox developmental protein N terminal ;  InterPro: IPR022151  This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes. 
Probab=36.08  E-value=22  Score=24.93  Aligned_cols=19  Identities=21%  Similarity=0.518  Sum_probs=16.7

Q ss_pred             HhHHHHHHhhhcceeeCCC
Q 011096          439 SVELPLAMLLYHFDWKLPN  457 (493)
Q Consensus       439 ~~~~~l~~ll~~f~~~~~~  457 (493)
                      -|+-++..+|+-|||+|.+
T Consensus        61 ~IrdAVsqVLkGYDWtLVP   79 (84)
T PF12444_consen   61 CIRDAVSQVLKGYDWTLVP   79 (84)
T ss_pred             HHHHHHHHHhccCCceeee
Confidence            4788999999999999974


No 49 
>PF14129 DUF4296:  Domain of unknown function (DUF4296)
Probab=35.39  E-value=1.6e+02  Score=20.81  Aligned_cols=50  Identities=16%  Similarity=0.104  Sum_probs=41.2

Q ss_pred             ccHHHHHHHHHHHhhcCccchHHHHHHHHHHHhhCcHHHHHHHHHHHHhh
Q 011096          276 LTTDHIKAVISDIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVF  325 (493)
Q Consensus       276 ~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~  325 (493)
                      .+.+.........++-=+..++....-.+.+-++||+..+++.+++.+-+
T Consensus        29 ~~~~~~~~~~~~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~rL   78 (87)
T PF14129_consen   29 DSSDDNMIAYYQYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIERL   78 (87)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            34555566667788889999999999999999999999999999876644


No 50 
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=34.90  E-value=82  Score=22.24  Aligned_cols=18  Identities=22%  Similarity=0.506  Sum_probs=15.7

Q ss_pred             CcHHHHHHHHHHHHhhcC
Q 011096          310 NPRVMKKAQAEVREVFHR  327 (493)
Q Consensus       310 ~p~~~~~l~~Ei~~~~~~  327 (493)
                      .|++.+.+|+||.+++..
T Consensus        35 ~pd~l~~Lr~eIl~VI~K   52 (88)
T COG0851          35 QPDYLEQLRKEILEVISK   52 (88)
T ss_pred             CcchHHHHHHHHHHHHHH
Confidence            489999999999999764


No 51 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=34.22  E-value=33  Score=28.87  Aligned_cols=44  Identities=20%  Similarity=0.157  Sum_probs=30.9

Q ss_pred             CCccHHHHHHhhcCCCCCCCCCCccccccceeEcceecCCCCEEEe
Q 011096          338 EMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIV  383 (493)
Q Consensus       338 ~l~~l~a~i~E~lRl~~~~~~~~~R~~~~~~~l~g~~ip~g~~v~~  383 (493)
                      .-....|||.|+.-.....-.-  =+..+|+.++|..|||||.+.-
T Consensus        51 ~~n~I~A~V~~~qtv~~Gs~vr--lRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   51 EKNTIRAVVDGTQTVVDGSRVR--LRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCCeEEEEEecceEEeCCCEEE--EEEcCceEECCEEeCCCCEEEE
Confidence            3456778888887665443321  2235789999999999998765


No 52 
>PF15330 SIT:  SHP2-interacting transmembrane adaptor protein, SIT
Probab=33.29  E-value=1e+02  Score=23.00  Aligned_cols=11  Identities=36%  Similarity=0.362  Sum_probs=7.2

Q ss_pred             CCCcccccccc
Q 011096           45 KLPVIGNLYQL   55 (493)
Q Consensus        45 ~~p~iG~~~~~   55 (493)
                      .-|+.||+...
T Consensus        45 ~~p~YgNL~~~   55 (107)
T PF15330_consen   45 DDPCYGNLELQ   55 (107)
T ss_pred             CCccccccccc
Confidence            46778887544


No 53 
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=32.68  E-value=16  Score=29.43  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=26.1

Q ss_pred             CCcCccccccCCCCCCCCCceeeecCCCCCCCcChhh
Q 011096          399 ESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSF  435 (493)
Q Consensus       399 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~~  435 (493)
                      -+|||++|=+=--....++...+-|..|+-.|-|..=
T Consensus        35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaKs   71 (185)
T COG2101          35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAKS   71 (185)
T ss_pred             CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccCc
Confidence            4799999843111112356689999999999999863


No 54 
>PF03742 PetN:  PetN ;  InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=31.32  E-value=83  Score=16.81  Aligned_cols=12  Identities=17%  Similarity=0.418  Sum_probs=5.5

Q ss_pred             CccchhhHhHHH
Q 011096            1 MELLGLSTTSSI   12 (493)
Q Consensus         1 m~~~~~~~~~~~   12 (493)
                      |+++++.+..++
T Consensus         1 mdiv~lgWaal~   12 (29)
T PF03742_consen    1 MDIVSLGWAALM   12 (29)
T ss_dssp             -HHHCHHHHHHH
T ss_pred             CcchhhhHHHHH
Confidence            566555544443


No 55 
>PF08569 Mo25:  Mo25-like;  InterPro: IPR013878  Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=29.53  E-value=4.7e+02  Score=24.38  Aligned_cols=41  Identities=10%  Similarity=0.070  Sum_probs=26.7

Q ss_pred             HHHHhhC-cHHHHHHHHHHHHhhcCCCccccccCCCCccHHHHHHhhcCCCCCC
Q 011096          304 MCEMMKN-PRVMKKAQAEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAA  356 (493)
Q Consensus       304 l~~L~~~-p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~  356 (493)
                      +-+|.+| |++...+.+-            |++..-.-....+++|++|..+..
T Consensus       116 v~yl~~~~peil~~L~~g------------y~~~dial~~g~mlRec~k~e~l~  157 (335)
T PF08569_consen  116 VDYLERHRPEILDILLRG------------YENPDIALNCGDMLRECIKHESLA  157 (335)
T ss_dssp             HHHHHT--THHHHHHHHG------------GGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHhCCHHHHHHHHHH------------hcCccccchHHHHHHHHHhhHHHH
Confidence            6788888 9998888761            222222234677899999986543


No 56 
>PHA03162 hypothetical protein; Provisional
Probab=27.93  E-value=54  Score=25.01  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             CCCCCCCcChhhHHHHhHHHHHHhh
Q 011096          424 GAGRRICPGMSFGLASVELPLAMLL  448 (493)
Q Consensus       424 g~G~r~C~G~~~A~~~~~~~l~~ll  448 (493)
                      ++|.+.|||+...+-++..=|+.|=
T Consensus         2 ~~~~k~~pk~~~tmEeLaaeL~kLq   26 (135)
T PHA03162          2 AGGSKKCPKAQPTMEDLAAEIAKLQ   26 (135)
T ss_pred             CCCcCCCCccCCCHHHHHHHHHHHH
Confidence            5699999999999988887777764


No 57 
>PRK13664 hypothetical protein; Provisional
Probab=27.40  E-value=1.6e+02  Score=18.69  Aligned_cols=7  Identities=43%  Similarity=0.406  Sum_probs=3.2

Q ss_pred             CCCCCCC
Q 011096           38 NPPPGPW   44 (493)
Q Consensus        38 ~~ppgp~   44 (493)
                      +.|+.|+
T Consensus        38 nkp~LPP   44 (62)
T PRK13664         38 NKPELPP   44 (62)
T ss_pred             CCCCCCC
Confidence            3444444


No 58 
>PF14483 Cut8_M:  Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=25.88  E-value=1.3e+02  Score=17.49  Aligned_cols=13  Identities=8%  Similarity=0.401  Sum_probs=10.4

Q ss_pred             HhhCcHHHHHHHH
Q 011096          307 MMKNPRVMKKAQA  319 (493)
Q Consensus       307 L~~~p~~~~~l~~  319 (493)
                      +.+||++++.+++
T Consensus        23 ~~~HPei~~~i~~   35 (38)
T PF14483_consen   23 CERHPEIQQEIRS   35 (38)
T ss_dssp             HHHSTHHHHHHHT
T ss_pred             HHhChhHHHHHHh
Confidence            4489999988875


No 59 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=25.00  E-value=32  Score=21.53  Aligned_cols=11  Identities=45%  Similarity=0.918  Sum_probs=8.6

Q ss_pred             eecCCCCCCCc
Q 011096          421 IPFGAGRRICP  431 (493)
Q Consensus       421 ~~Fg~G~r~C~  431 (493)
                      -+||-|.|.|-
T Consensus        12 ~kfg~GsrsC~   22 (56)
T KOG3506|consen   12 RKFGQGSRSCR   22 (56)
T ss_pred             cccCCCCccee
Confidence            47999998773


No 60 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=23.83  E-value=1.4e+02  Score=23.02  Aligned_cols=39  Identities=18%  Similarity=0.411  Sum_probs=29.7

Q ss_pred             CcchHHHHHhhcCCeEEEecCCccEEEecCHHHHHHHHHhc
Q 011096           60 PHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTH  100 (493)
Q Consensus        60 ~~~~~~~~~~kyG~v~~~~~~~~~~vvv~dp~~i~~i~~~~  100 (493)
                      ....+++|.++||.+--..  +..++...|++..+++.+++
T Consensus        76 v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~~  114 (129)
T PF13625_consen   76 VEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLADP  114 (129)
T ss_pred             HHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhCh
Confidence            3456899999999855532  45678899999999998764


No 61 
>PRK05933 type III secretion system protein; Validated
Probab=22.32  E-value=82  Score=28.54  Aligned_cols=43  Identities=21%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             HHHHHHhhcCCCCCCCCCCcccc-cc--ceeEcceecCCCCEEEee
Q 011096          342 LKLVVKETLRLHPAAPLLIPREC-GQ--RCQINGFDIPVKARVIVN  384 (493)
Q Consensus       342 l~a~i~E~lRl~~~~~~~~~R~~-~~--~~~l~g~~ip~g~~v~~~  384 (493)
                      ...-|+|.|+|.+....-.-|.+ .+  |+.++|..|.+|..|.++
T Consensus       317 T~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVd  362 (372)
T PRK05933        317 YSLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALG  362 (372)
T ss_pred             ccccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEEC
Confidence            56679999999998877655554 34  566699999999999876


No 62 
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=22.10  E-value=60  Score=26.74  Aligned_cols=57  Identities=16%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             CCcCccccccCCCCCCCCCceeeecCCCCCCCcCh-hhHHHH-hHHHHHHhhhcceeeC
Q 011096          399 ESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGM-SFGLAS-VELPLAMLLYHFDWKL  455 (493)
Q Consensus       399 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~A~~~-~~~~l~~ll~~f~~~~  455 (493)
                      -+|+||+|-.---....+....+-|+.|+=.|-|. .-.... ..--++.+|++..+..
T Consensus        29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~~   87 (174)
T cd04516          29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFPA   87 (174)
T ss_pred             CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            58999998432111223456789999999999993 333222 2233445566655543


No 63 
>PF10777 YlaC:  Inner membrane protein YlaC;  InterPro: IPR019713  The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis []. 
Probab=21.18  E-value=56  Score=25.67  Aligned_cols=39  Identities=10%  Similarity=0.389  Sum_probs=30.8

Q ss_pred             HHHHHhhCcHHHHHHHHHHHHhhcCCCccccccCCCCcc
Q 011096          303 AMCEMMKNPRVMKKAQAEVREVFHRTGKVNETSIDEMKF  341 (493)
Q Consensus       303 ~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~~  341 (493)
                      ++-.++++|++-+.+.++|++.+...+.+++-|.-.+.|
T Consensus       114 ai~~iL~~p~V~~~~K~~i~~i~~~Kgei~FYDVy~la~  152 (155)
T PF10777_consen  114 AIDKILQSPQVPDEIKQGIQRIISTKGEISFYDVYSLAY  152 (155)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCceeEEEeEEeec
Confidence            345678999999999999999998888887766555444


No 64 
>PF09926 DUF2158:  Uncharacterized small protein (DUF2158);  InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function. 
Probab=20.99  E-value=99  Score=19.54  Aligned_cols=18  Identities=17%  Similarity=0.290  Sum_probs=15.1

Q ss_pred             cCCeEEEecCCccEEEec
Q 011096           71 YGPLMLLQLGEVPTIIVS   88 (493)
Q Consensus        71 yG~v~~~~~~~~~~vvv~   88 (493)
                      -|+++++..+|..++|..
T Consensus         3 ~GDvV~LKSGGp~MTV~~   20 (53)
T PF09926_consen    3 IGDVVQLKSGGPRMTVTE   20 (53)
T ss_pred             CCCEEEEccCCCCeEEEE
Confidence            389999999998888873


No 65 
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.50  E-value=32  Score=28.29  Aligned_cols=36  Identities=17%  Similarity=0.477  Sum_probs=25.6

Q ss_pred             CCcCccccccCCCCCCCCCceeeecCCCCCCCcChh
Q 011096          399 ESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMS  434 (493)
Q Consensus       399 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~  434 (493)
                      -+|+|+||-.---....+....+-|+.|+=.|.|..
T Consensus        29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGak   64 (174)
T cd04518          29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAK   64 (174)
T ss_pred             cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccC
Confidence            479999984321112235568899999999999973


Done!