BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011097
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KH1|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH1|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH1|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH1|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase
pdb|1KH2|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KH2|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KH2|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KH2|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp
pdb|1KOR|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KOR|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KOR|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1KOR|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitors
pdb|1J1Z|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Substrate
pdb|1J1Z|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Substrate
pdb|1J1Z|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Substrate
pdb|1J1Z|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Substrate
pdb|1J20|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Product
pdb|1J20|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Product
pdb|1J20|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Product
pdb|1J20|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Product
pdb|1J21|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp And
Citrulline
pdb|1J21|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp And
Citrulline
pdb|1J21|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp And
Citrulline
pdb|1J21|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Atp And
Citrulline
pdb|1KH3|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitor
pdb|1KH3|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitor
pdb|1KH3|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitor
pdb|1KH3|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Argininosuccinate Synthetase In Complex With Inhibitor
Length = 400
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/395 (60%), Positives = 310/395 (78%), Gaps = 1/395 (0%)
Query: 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKD 156
K+VLAYSGGLDTS+I+ WL+E Y EV+ FTAD+GQG +E++ EKA +GA + + D
Sbjct: 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG-EEVEEAREKALRTGASKAIALD 60
Query: 157 LKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGN 216
LKEEFV+D++FP +RAGA+YE YLLGTS+ARP+IAK +V +A E GA+A+AHG TGKGN
Sbjct: 61 LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 120
Query: 217 DQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWH 276
DQVRFELT +AL P++ V+APWREW QGR++ I YA+ H +PVPVT++ YS D NL H
Sbjct: 121 DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLH 180
Query: 277 LSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLA 336
+S+EG +LEDP EP K M+ M+ DPE+AP+ PEY+E+ G PV+VNG++LSPA+LL
Sbjct: 181 ISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQ 240
Query: 337 ELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDS 396
LNEIGGRHG+GR+D+VENR VGMKSRGVYETPGGTIL+ A + +ESLTLDRE + +D
Sbjct: 241 RLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDM 300
Query: 397 LALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQ 456
L+ KYAELVY G W+ P RE++ A+ +++ ++ TG LKLYKG+V V GR +PKSLYRQ
Sbjct: 301 LSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQ 360
Query: 457 DISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER 491
D+ SF+ YDQ DA GFI++ L +RVRA++ER
Sbjct: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 395
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/405 (48%), Positives = 274/405 (67%), Gaps = 11/405 (2%)
Query: 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKD 156
KVVLAYSGGLDTSVI+ WL E G +V+ + A+VGQ + ++EKA +GA ++ V+D
Sbjct: 16 KVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK-DDFVAIKEKALKTGASKVYVED 73
Query: 157 LKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGN 216
L+ EFV DYIF L A+YE +YLLGT++ARP+IAK V++A + GA VAHG TGKGN
Sbjct: 74 LRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGN 133
Query: 217 DQVRFELTFFALNPELNVVAPWREWDI----QGREDAIEYAKKHNVPVPVTKKSIYSRDR 272
DQVRFELT+ ALNP L V++PW++ + +GR D I YA + +P+ V+KK YS D
Sbjct: 134 DQVRFELTYAALNPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKVSKKRPYSEDE 193
Query: 273 NLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSV-----NGK 327
NL H+SHE LEDP + P +D++ +V P+DAP++ +EI +GIPV V +
Sbjct: 194 NLMHISHEAGKLEDPAHIPDEDVFTWTVSPKDAPDEETLLEIHFENGIPVKVVNLKDGTE 253
Query: 328 KLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLD 387
K P L LNE+G ++G+GR+DMVENR +G+KSRGVYETPG TIL+ A ++LE +T+D
Sbjct: 254 KTDPLELFEYLNEVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMD 313
Query: 388 RETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGR 447
+E M ++D LA K+AEL+Y G WF P E + A + TG VT+ +YKG+V R
Sbjct: 314 KEVMHLRDMLAPKFAELIYNGFWFSPEMEFLLAAFRKAQENVTGKVTVSIYKGNVMPVAR 373
Query: 448 TSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLERG 492
SP SLY ++SS + +D D+ GFI ++ L ++V ++++G
Sbjct: 374 YSPYSLYNPELSSMDVEGGFDATDSKGFINIHALRLKVHQLVKKG 418
>pdb|2NZ2|A Chain A, Crystal Structure Of Human Argininosuccinate Synthase In
Complex With Aspartate And Citrulline
Length = 413
Score = 355 bits (910), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 178/396 (44%), Positives = 261/396 (65%), Gaps = 11/396 (2%)
Query: 98 VVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157
VVLAYSGGLDTS I+ WL+E G +V+ + A++GQ ++ + +KA GA ++ ++D+
Sbjct: 8 VVLAYSGGLDTSCILVWLKEQ-GYDVIAYLANIGQK-EDFEEARKKALKLGAKKVFIEDV 65
Query: 158 KEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGND 217
EFV+++I+P +++ A+YE +YLLGTS+ARP IA+ V++A+ GA V+HG TGKGND
Sbjct: 66 SREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGND 125
Query: 218 QVRFELTFFALNPELNVVAPWREWDI----QGREDAIEYAKKHNVPVPVTKKSIYSRDRN 273
QVRFEL+ ++L P++ V+APWR + +GR D +EYAK+H +P+PVT K+ +S D N
Sbjct: 126 QVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDEN 185
Query: 274 LWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKK----- 328
L H+S+E ILE+P+N+ +Y + DP APN P+ +EI G+PV V K
Sbjct: 186 LMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTH 245
Query: 329 LSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDR 388
+ L LNE+ G+HG+GRID+VENR +GMKSRG+YETP GTIL+ A ++E+ T+DR
Sbjct: 246 QTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDR 305
Query: 389 ETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRT 448
E ++K L LK+AELVY G W P E + + + G V + + KG V + GR
Sbjct: 306 EVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRE 365
Query: 449 SPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMR 484
SP SLY +++ S Y+ DA GFI + L ++
Sbjct: 366 SPLSLYNEELVSMNVQGDYEPTDATGFININSLRLK 401
>pdb|1K97|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Aspartate And Citrulline
pdb|1K92|A Chain A, Crystal Structure Of Uncomplexed E. Coli Argininosuccinate
Synthetase
pdb|1KP2|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp
pdb|1KP3|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp And Citrulline
Length = 455
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 185/385 (48%), Gaps = 22/385 (5%)
Query: 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKE-LDGLEEKAKASGACQLVVK 155
++ +A+SGGLDTS + W+R+ G +TA++GQ +E D + +A GA +
Sbjct: 12 RIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLI 70
Query: 156 DLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGC 211
D +++ V + I ++ GA + Y T + R V +V +E G + G
Sbjct: 71 DCRKQLVAEGI-AAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGS 129
Query: 212 TGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSI 267
T KGND RF N EL + PW + D + GR + E+ ++ +
Sbjct: 130 TYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKA 189
Query: 268 YSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVD--PEDAPNQPEYIEIGIVSGIPVSVN 325
YS D N+ +HE LE + K +M V E E + + G PV++N
Sbjct: 190 YSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVALN 249
Query: 326 GKKLSP-ASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESL 384
GK S ++ E N IGGRHG+G D +ENR++ KSRG+YE PG +L A + L +
Sbjct: 250 GKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTG 309
Query: 385 TLDRETMQVKDSLALKYAELVYAGRWFDP----LRESIDAFMENITKTTTGSVTLKLYKG 440
+ +T++ + + L+Y GRWFD LR+S+ + + TG VTL+L +G
Sbjct: 310 IHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRW---VASQITGEVTLELRRG 366
Query: 441 S-VSVTGRTSPKSLYRQDISSFESG 464
+ S+ S Y+ + + E G
Sbjct: 367 NDYSILNTVSENLTYKPERLTMEKG 391
>pdb|3EGW|B Chain B, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 509
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 262 VTKKSIYSRDRNLWHLSHEGDILEDP-ENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGI 320
V ++ R R L L ++ D +E E +KD+Y +D PN P+ IE I GI
Sbjct: 258 VCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGI 317
Query: 321 PVSV 324
P+SV
Sbjct: 318 PLSV 321
>pdb|1Q16|B Chain B, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
pdb|1R27|B Chain B, Crystal Structure Of Nargh Complex
pdb|1R27|D Chain D, Crystal Structure Of Nargh Complex
pdb|1SIW|B Chain B, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y5I|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
pdb|3IR5|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49c
pdb|3IR6|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49s
pdb|3IR7|B Chain B, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 512
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 262 VTKKSIYSRDRNLWHLSHEGDILEDP-ENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGI 320
V ++ R R L L ++ D +E E +KD+Y +D PN P+ IE I GI
Sbjct: 258 VCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGI 317
Query: 321 PVSV 324
P+SV
Sbjct: 318 PLSV 321
>pdb|1Y4Z|B Chain B, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
Length = 512
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 262 VTKKSIYSRDRNLWHLSHEGDILEDP-ENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGI 320
V ++ R R L L ++ D +E E +KD+Y +D PN P+ IE I GI
Sbjct: 258 VCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGI 317
Query: 321 PVSV 324
P+SV
Sbjct: 318 PLSV 321
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 33 FPRKLHSFQEFGSRASELNGRAVVSSTCNVIRACEPKAIQALLSSEREVESAPKSGGGRR 92
F R+ Q G +++ I C P +++ +E + + +
Sbjct: 174 FKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPN-----WTTKHIIEDSIRDIQEKV 228
Query: 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVG-QGIKELDGLEEKAKASGACQ 151
GK +V++ SGG+D++V + + G ++VC D G + E+D + + +
Sbjct: 229 GK-EQVIVGLSGGVDSAVTATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAK 287
Query: 152 LVVKDLKEEFVK 163
++ D K+ F+K
Sbjct: 288 VICVDAKDRFMK 299
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 91 RRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVG-QGIKELDGLEEKAKASGA 149
R GK ++V+LA SGG+D+S + L G + + D G + E + +E +A G
Sbjct: 206 RAGK-DRVLLAVSGGVDSSTLA-LLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGV 263
Query: 150 CQLVVKDLKEEFVK 163
LVV D KE F+K
Sbjct: 264 NLLVV-DAKERFLK 276
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 91 RRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVG-QGIKELDGLEEKAKASGA 149
R GK ++V+LA SGG+D+S + L G + + D G + E + +E +A G
Sbjct: 206 RAGK-DRVLLAVSGGVDSSTLA-LLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGV 263
Query: 150 CQLVVKDLKEEFVK 163
LVV D KE F+K
Sbjct: 264 NLLVV-DAKERFLK 276
>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped IntermediateLIGAND COMPLEX
STRUCTURES
Length = 163
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 215 GNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKK 255
G + E + F L+PE VV WR+ + G DA+ A K
Sbjct: 118 GKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALK 158
>pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped Intermediate/ligand Complex
Structures
pdb|3GKN|B Chain B, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped Intermediate/ligand Complex
Structures
Length = 163
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 215 GNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKK 255
G + E + F L+PE VV WR+ + G DA+ A K
Sbjct: 118 GKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALK 158
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVG 131
+KV+L SGG+D+SV L G + C D G
Sbjct: 228 DKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNG 263
>pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped IntermediateLIGAND COMPLEX
STRUCTURES
Length = 163
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 215 GNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKK 255
G + E + F L+PE VV WR+ + G DA+ A K
Sbjct: 118 GKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,423,075
Number of Sequences: 62578
Number of extensions: 625813
Number of successful extensions: 1809
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1788
Number of HSP's gapped (non-prelim): 16
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)