Query 011097
Match_columns 493
No_of_seqs 440 out of 2384
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0137 ArgG Argininosuccinate 100.0 4E-121 8E-126 925.8 37.3 396 95-491 4-400 (403)
2 PF00764 Arginosuc_synth: Argi 100.0 2E-114 3E-119 895.5 35.1 387 99-486 1-387 (388)
3 PLN00200 argininosuccinate syn 100.0 6E-113 1E-117 891.2 42.7 397 96-492 6-403 (404)
4 PRK00509 argininosuccinate syn 100.0 2E-112 4E-117 886.2 42.0 395 95-490 2-396 (399)
5 PRK13820 argininosuccinate syn 100.0 6E-111 1E-115 874.8 41.5 392 95-492 2-394 (394)
6 PRK04527 argininosuccinate syn 100.0 1E-110 3E-115 870.3 39.4 389 96-490 3-395 (400)
7 PRK05370 argininosuccinate syn 100.0 1E-109 3E-114 862.7 41.3 386 94-487 10-417 (447)
8 cd01999 Argininosuccinate_Synt 100.0 1E-108 2E-113 857.7 40.5 384 98-482 1-385 (385)
9 TIGR00032 argG argininosuccina 100.0 8E-108 2E-112 853.3 39.7 392 97-490 1-393 (394)
10 KOG1706 Argininosuccinate synt 100.0 2E-106 5E-111 790.9 21.7 394 94-489 4-406 (412)
11 PF03054 tRNA_Me_trans: tRNA m 100.0 1.6E-39 3.5E-44 335.4 7.8 282 96-436 1-320 (356)
12 COG0482 TrmU Predicted tRNA(5- 100.0 6.1E-38 1.3E-42 320.1 13.5 240 95-371 3-270 (356)
13 PRK14664 tRNA-specific 2-thiou 100.0 1.5E-36 3.3E-41 314.4 14.6 293 91-444 1-316 (362)
14 PRK14665 mnmA tRNA-specific 2- 100.0 5.4E-35 1.2E-39 303.2 14.2 265 91-388 1-287 (360)
15 PRK00143 mnmA tRNA-specific 2- 100.0 3.9E-34 8.5E-39 296.1 15.8 285 96-444 1-316 (346)
16 cd01998 tRNA_Me_trans tRNA met 100.0 5.8E-34 1.3E-38 295.1 12.2 287 97-444 1-320 (349)
17 TIGR00420 trmU tRNA (5-methyla 100.0 8.6E-34 1.9E-38 293.9 12.9 278 96-434 1-314 (352)
18 KOG2805 tRNA (5-methylaminomet 100.0 7.4E-29 1.6E-33 245.5 9.3 255 93-388 3-293 (377)
19 PRK10696 tRNA 2-thiocytidine b 99.9 4E-24 8.8E-29 213.0 18.1 177 72-270 10-207 (258)
20 COG0037 MesJ tRNA(Ile)-lysidin 99.9 9.6E-23 2.1E-27 205.6 15.1 177 69-270 1-197 (298)
21 cd01993 Alpha_ANH_like_II This 99.9 1.3E-20 2.8E-25 176.6 17.2 159 97-270 1-183 (185)
22 cd01990 Alpha_ANH_like_I This 99.9 2.6E-21 5.5E-26 185.3 12.6 147 98-260 1-148 (202)
23 PRK08349 hypothetical protein; 99.9 1.1E-20 2.3E-25 181.3 16.2 158 96-269 1-172 (198)
24 TIGR00268 conserved hypothetic 99.8 6.6E-21 1.4E-25 189.4 13.7 161 93-276 10-171 (252)
25 PF01171 ATP_bind_3: PP-loop f 99.8 7.6E-21 1.7E-25 179.6 13.3 151 97-270 1-172 (182)
26 TIGR00884 guaA_Cterm GMP synth 99.8 1.8E-20 3.8E-25 191.6 15.3 184 70-281 2-200 (311)
27 TIGR02432 lysidine_TilS_N tRNA 99.8 7.2E-20 1.6E-24 173.2 15.7 154 97-270 1-176 (189)
28 cd01712 ThiI ThiI is required 99.8 1.4E-19 3E-24 170.1 16.6 148 97-260 1-158 (177)
29 PRK00919 GMP synthase subunit 99.8 1.4E-19 2.9E-24 184.4 15.3 150 96-261 22-180 (307)
30 PRK11106 queuosine biosynthesi 99.8 2.4E-19 5.1E-24 176.0 16.4 167 96-269 2-190 (231)
31 cd01992 PP-ATPase N-terminal d 99.8 1.6E-19 3.5E-24 169.8 13.9 150 97-269 1-171 (185)
32 COG0603 Predicted PP-loop supe 99.8 2.2E-19 4.8E-24 173.5 14.8 169 95-271 2-190 (222)
33 cd01997 GMP_synthase_C The C-t 99.8 1.5E-19 3.3E-24 183.4 13.4 169 97-281 1-185 (295)
34 PRK08384 thiamine biosynthesis 99.8 7.8E-19 1.7E-23 183.7 18.3 159 95-274 180-350 (381)
35 PRK00074 guaA GMP synthase; Re 99.8 2E-19 4.4E-24 195.2 13.8 159 96-269 216-392 (511)
36 COG1606 ATP-utilizing enzymes 99.8 5E-19 1.1E-23 172.6 11.1 150 95-261 17-167 (269)
37 PF06508 QueC: Queuosine biosy 99.8 1.2E-18 2.6E-23 168.8 13.0 167 97-270 1-186 (209)
38 TIGR00364 exsB protein. This p 99.7 8.9E-18 1.9E-22 161.2 13.1 162 98-266 1-184 (201)
39 TIGR00342 thiazole biosynthesi 99.7 3.3E-17 7.2E-22 171.5 17.0 151 93-258 170-328 (371)
40 PRK14561 hypothetical protein; 99.7 7.7E-17 1.7E-21 154.5 17.2 142 96-256 1-146 (194)
41 TIGR00552 nadE NAD+ synthetase 99.7 3.1E-17 6.8E-22 162.8 13.9 166 95-275 22-189 (250)
42 PRK10660 tilS tRNA(Ile)-lysidi 99.7 1.5E-16 3.3E-21 169.8 13.6 145 92-263 12-180 (436)
43 PRK01269 tRNA s(4)U8 sulfurtra 99.7 6.6E-16 1.4E-20 166.9 17.9 156 95-269 177-343 (482)
44 PRK01565 thiamine biosynthesis 99.7 6.6E-16 1.4E-20 162.9 17.0 148 93-258 174-332 (394)
45 cd01713 PAPS_reductase This do 99.7 3.1E-16 6.7E-21 143.5 12.6 154 97-261 1-162 (173)
46 cd01995 ExsB ExsB is a transcr 99.7 7.5E-16 1.6E-20 143.5 15.0 133 97-266 1-146 (169)
47 PLN02347 GMP synthetase 99.7 4.2E-16 9E-21 169.7 13.0 176 93-282 227-425 (536)
48 PRK08576 hypothetical protein; 99.6 2.3E-15 4.9E-20 159.9 14.8 168 67-261 214-388 (438)
49 PF02568 ThiI: Thiamine biosyn 99.6 1.2E-14 2.5E-19 139.5 15.0 148 96-258 4-161 (197)
50 PRK05253 sulfate adenylyltrans 99.6 6.8E-15 1.5E-19 149.9 13.7 149 96-261 28-206 (301)
51 cd00553 NAD_synthase NAD+ synt 99.6 6.8E-15 1.5E-19 145.9 13.1 152 96-261 24-180 (248)
52 PRK13980 NAD synthetase; Provi 99.5 9.3E-14 2E-18 139.2 14.1 147 96-259 31-180 (265)
53 KOG2840 Uncharacterized conser 99.5 1.8E-14 3.9E-19 144.8 5.9 210 51-274 11-246 (347)
54 PRK02090 phosphoadenosine phos 99.5 1.2E-13 2.5E-18 136.7 11.2 154 96-261 41-195 (241)
55 cd01994 Alpha_ANH_like_IV This 99.5 4.6E-13 9.9E-18 128.5 14.6 153 97-280 1-160 (194)
56 TIGR02039 CysD sulfate adenyly 99.5 4.3E-13 9.2E-18 136.0 13.0 148 97-261 21-198 (294)
57 COG0519 GuaA GMP synthase, PP- 99.5 6E-13 1.3E-17 131.4 12.4 163 68-261 5-186 (315)
58 cd01996 Alpha_ANH_like_III Thi 99.4 8.9E-13 1.9E-17 120.7 12.6 108 97-213 3-112 (154)
59 TIGR03679 arCOG00187 arCOG0018 99.4 1.7E-12 3.6E-17 126.8 14.0 148 99-280 1-158 (218)
60 cd01986 Alpha_ANH_like Adenine 99.4 5.9E-12 1.3E-16 108.2 11.9 95 98-239 1-103 (103)
61 TIGR03573 WbuX N-acetyl sugar 99.3 1.3E-11 2.9E-16 128.2 12.8 110 97-214 61-171 (343)
62 PRK12563 sulfate adenylyltrans 99.3 2.7E-11 5.9E-16 123.5 13.1 148 96-261 38-216 (312)
63 PF02540 NAD_synthase: NAD syn 99.3 1.1E-10 2.4E-15 115.7 15.2 149 96-260 19-170 (242)
64 PRK00876 nadE NAD synthetase; 99.2 2.8E-10 6.1E-15 117.2 15.3 174 66-260 15-238 (326)
65 PF01507 PAPS_reduct: Phosphoa 99.2 3.5E-11 7.7E-16 111.3 5.9 152 97-261 1-156 (174)
66 COG2117 Predicted subunit of t 99.1 4.2E-10 9.1E-15 103.4 12.1 143 97-256 2-148 (198)
67 COG0301 ThiI Thiamine biosynth 99.1 1E-09 2.2E-14 114.5 16.2 147 95-259 175-333 (383)
68 PTZ00323 NAD+ synthase; Provis 99.1 1.3E-09 2.9E-14 110.8 16.1 177 65-259 24-211 (294)
69 PRK02628 nadE NAD synthetase; 99.1 1.1E-09 2.4E-14 123.2 13.3 148 95-257 361-522 (679)
70 TIGR00289 conserved hypothetic 99.1 3.3E-09 7.1E-14 103.9 14.5 149 96-280 1-156 (222)
71 PRK08557 hypothetical protein; 99.0 4.1E-09 8.8E-14 112.0 15.4 150 95-261 181-339 (417)
72 cd01991 Asn_Synthase_B_C The C 99.0 3.6E-09 7.8E-14 105.0 14.0 111 95-213 15-126 (269)
73 PRK13794 hypothetical protein; 99.0 2.1E-09 4.7E-14 116.3 13.2 163 96-274 248-418 (479)
74 PRK13795 hypothetical protein; 99.0 1.4E-09 3.1E-14 121.5 11.1 148 96-261 244-401 (636)
75 COG1365 Predicted ATPase (PP-l 99.0 7.2E-09 1.6E-13 99.2 13.9 149 96-269 61-213 (255)
76 TIGR00434 cysH phosophoadenyly 99.0 4.3E-09 9.2E-14 102.0 11.9 152 96-261 14-170 (212)
77 PF00733 Asn_synthase: Asparag 98.9 1.3E-08 2.8E-13 99.2 13.1 113 95-213 17-130 (255)
78 PRK13981 NAD synthetase; Provi 98.9 1.2E-08 2.5E-13 112.2 13.7 148 96-257 281-433 (540)
79 TIGR02057 PAPS_reductase phosp 98.9 9.9E-09 2.1E-13 100.9 11.6 150 96-261 26-185 (226)
80 COG0175 CysH 3'-phosphoadenosi 98.9 1.7E-08 3.6E-13 101.3 12.7 148 97-261 41-197 (261)
81 COG2102 Predicted ATPases of P 98.8 3.7E-08 8E-13 95.5 12.7 151 96-280 1-158 (223)
82 TIGR01536 asn_synth_AEB aspara 98.8 7.7E-08 1.7E-12 103.8 14.8 110 95-213 253-366 (467)
83 TIGR00290 MJ0570_dom MJ0570-re 98.8 9.7E-08 2.1E-12 93.6 13.8 148 97-280 2-157 (223)
84 PRK00768 nadE NAD synthetase; 98.8 1.2E-07 2.6E-12 95.3 14.4 151 95-259 38-200 (268)
85 KOG1622 GMP synthase [Nucleoti 98.8 3.6E-08 7.8E-13 103.1 10.8 164 90-270 226-416 (552)
86 COG0171 NadE NAD synthase [Coe 98.8 1E-07 2.2E-12 95.8 13.5 171 66-260 8-186 (268)
87 PF01902 ATP_bind_4: ATP-bindi 98.5 1.7E-07 3.8E-12 91.6 7.8 149 96-280 1-157 (218)
88 KOG2594 Uncharacterized conser 98.5 1.6E-06 3.5E-11 88.7 14.5 190 64-261 33-266 (396)
89 PRK06850 hypothetical protein; 98.5 1.2E-06 2.6E-11 95.0 14.4 151 96-261 35-224 (507)
90 TIGR03183 DNA_S_dndC putative 98.5 2.8E-06 6.1E-11 91.1 15.4 151 96-261 14-205 (447)
91 cd01984 AANH_like Adenine nucl 98.4 1.2E-06 2.6E-11 72.4 7.2 57 98-214 1-59 (86)
92 PTZ00077 asparagine synthetase 98.3 5.9E-06 1.3E-10 91.8 13.4 107 96-211 238-357 (586)
93 PRK09431 asnB asparagine synth 98.3 8.7E-06 1.9E-10 90.0 14.2 112 96-219 228-354 (554)
94 PLN02549 asparagine synthase ( 98.3 7.8E-06 1.7E-10 90.7 12.7 107 96-212 226-344 (578)
95 TIGR03104 trio_amidotrans aspa 98.1 2.7E-05 5.9E-10 86.7 13.7 107 95-211 260-371 (589)
96 TIGR03108 eps_aminotran_1 exos 98.1 2E-05 4.4E-10 88.3 12.6 108 96-213 259-367 (628)
97 COG0367 AsnB Asparagine syntha 97.9 7.5E-05 1.6E-09 82.4 12.7 107 96-211 231-340 (542)
98 PLN02309 5'-adenylylsulfate re 97.9 0.00012 2.6E-09 79.1 13.3 159 96-270 111-284 (457)
99 TIGR00424 APS_reduc 5'-adenyly 97.9 0.00015 3.3E-09 78.3 13.2 151 96-262 116-281 (463)
100 TIGR02055 APS_reductase thiore 97.8 0.00019 4.1E-09 68.8 10.9 142 105-261 2-149 (191)
101 PLN02339 NAD+ synthase (glutam 97.7 0.00026 5.5E-09 80.5 12.7 65 95-160 348-450 (700)
102 KOG0571 Asparagine synthase (g 97.6 0.00028 6E-09 74.3 10.1 108 96-211 226-341 (543)
103 PF02677 DUF208: Uncharacteriz 96.8 0.026 5.7E-07 53.5 12.6 159 102-270 5-173 (176)
104 COG3969 Predicted phosphoadeno 96.5 0.0047 1E-07 63.6 6.1 79 63-151 5-89 (407)
105 KOG2316 Predicted ATPase (PP-l 95.1 0.25 5.4E-06 48.4 11.0 105 96-214 1-118 (277)
106 TIGR00269 conserved hypothetic 94.0 0.061 1.3E-06 46.7 3.7 37 232-272 1-37 (104)
107 COG1636 Uncharacterized protei 92.0 1.6 3.4E-05 42.0 10.4 164 96-270 4-179 (204)
108 cd01987 USP_OKCHK USP domain i 90.5 3.8 8.2E-05 35.2 10.7 86 97-214 1-96 (124)
109 KOG0189 Phosphoadenosine phosp 88.8 1.5 3.3E-05 42.7 7.2 146 97-261 48-205 (261)
110 PRK10490 sensor protein KdpD; 88.5 3.5 7.6E-05 48.6 11.6 71 94-166 249-329 (895)
111 KOG0573 Asparagine synthase [A 84.9 0.7 1.5E-05 49.7 2.9 33 96-128 251-287 (520)
112 cd01988 Na_H_Antiporter_C The 81.8 19 0.00041 30.7 10.4 35 97-131 1-38 (132)
113 cd05565 PTS_IIB_lactose PTS_II 78.9 4 8.7E-05 35.2 5.0 61 97-158 2-81 (99)
114 cd01989 STK_N The N-terminal d 78.9 14 0.00031 32.5 8.8 34 97-130 1-37 (146)
115 COG2205 KdpD Osmosensitive K+ 77.2 18 0.00039 42.1 10.7 70 95-166 248-327 (890)
116 cd00293 USP_Like Usp: Universa 73.7 45 0.00098 27.6 10.2 36 97-132 1-39 (130)
117 PRK09590 celB cellobiose phosp 67.1 12 0.00025 32.6 5.0 63 95-158 1-84 (104)
118 TIGR00853 pts-lac PTS system, 65.4 20 0.00043 30.5 6.1 63 95-158 3-84 (95)
119 PF10288 DUF2392: Protein of u 64.1 6.6 0.00014 34.1 3.0 28 229-259 29-56 (107)
120 PRK15118 universal stress glob 62.1 70 0.0015 28.1 9.4 36 96-131 4-42 (144)
121 COG1440 CelA Phosphotransferas 59.4 20 0.00043 31.2 5.0 63 95-158 1-82 (102)
122 PRK06849 hypothetical protein; 52.7 2.3E+02 0.005 29.7 12.8 33 95-128 4-36 (389)
123 PRK04148 hypothetical protein; 47.1 1.6E+02 0.0034 26.9 9.1 76 113-210 33-109 (134)
124 PF00582 Usp: Universal stress 46.2 46 0.001 27.8 5.3 36 96-131 3-41 (140)
125 COG1830 FbaB DhnA-type fructos 45.9 1.3E+02 0.0028 30.6 9.0 86 119-228 109-201 (265)
126 PF02302 PTS_IIB: PTS system, 45.8 89 0.0019 25.3 6.8 33 97-129 1-37 (90)
127 PRK05647 purN phosphoribosylgl 43.8 1E+02 0.0022 29.8 7.8 57 95-157 1-59 (200)
128 cd05564 PTS_IIB_chitobiose_lic 42.9 60 0.0013 27.5 5.4 61 97-158 1-80 (96)
129 cd01523 RHOD_Lact_B Member of 42.7 50 0.0011 27.3 4.9 35 94-131 60-94 (100)
130 PRK06027 purU formyltetrahydro 41.7 57 0.0012 33.3 6.0 82 65-158 61-146 (286)
131 COG2403 Predicted GTPase [Gene 41.5 3.3E+02 0.0072 29.4 11.4 117 94-211 5-163 (449)
132 COG0794 GutQ Predicted sugar p 38.1 52 0.0011 32.1 4.7 40 90-131 82-124 (202)
133 PF03853 YjeF_N: YjeF-related 36.5 3E+02 0.0064 25.6 9.5 55 94-149 24-82 (169)
134 PRK08305 spoVFB dipicolinate s 35.0 78 0.0017 30.7 5.4 34 94-128 4-41 (196)
135 TIGR00639 PurN phosphoribosylg 33.4 1.5E+02 0.0032 28.4 7.0 56 96-157 1-58 (190)
136 COG0541 Ffh Signal recognition 33.1 1.2E+02 0.0027 33.1 6.9 81 100-210 106-189 (451)
137 PRK11175 universal stress prot 32.9 2.6E+02 0.0055 27.9 9.1 23 193-215 251-273 (305)
138 KOG0023 Alcohol dehydrogenase, 32.3 1.9E+02 0.0041 30.6 7.8 66 81-158 170-235 (360)
139 TIGR01284 alt_nitrog_alph nitr 31.8 2.5E+02 0.0055 30.6 9.3 60 94-158 324-383 (457)
140 PRK03359 putative electron tra 31.6 3.1E+02 0.0067 27.7 9.3 77 112-213 45-122 (256)
141 PF02844 GARS_N: Phosphoribosy 31.3 1.4E+02 0.0031 25.8 5.8 68 96-164 1-77 (100)
142 PF02441 Flavoprotein: Flavopr 31.2 60 0.0013 28.7 3.7 31 96-127 1-34 (129)
143 PRK06029 3-octaprenyl-4-hydrox 31.2 83 0.0018 30.2 4.8 34 95-128 1-37 (185)
144 PRK10499 PTS system N,N'-diace 30.9 80 0.0017 27.4 4.3 36 95-130 3-43 (106)
145 PRK08227 autoinducer 2 aldolas 29.8 1.3E+02 0.0028 30.7 6.1 70 119-212 106-180 (264)
146 CHL00073 chlN photochlorophyll 29.1 1.8E+02 0.0039 31.9 7.6 62 85-149 304-369 (457)
147 TIGR00587 nfo apurinic endonuc 28.6 3.8E+02 0.0083 26.8 9.5 48 99-149 6-60 (274)
148 cd01534 4RHOD_Repeat_3 Member 28.5 1.2E+02 0.0025 24.9 4.8 35 95-132 56-90 (95)
149 PRK05569 flavodoxin; Provision 28.3 1.2E+02 0.0026 26.7 5.2 52 94-147 82-139 (141)
150 PRK10116 universal stress prot 28.2 3.9E+02 0.0085 23.0 9.5 33 96-128 4-39 (142)
151 PF01012 ETF: Electron transfe 27.9 4E+02 0.0086 24.2 8.8 80 111-215 23-102 (164)
152 cd01444 GlpE_ST GlpE sulfurtra 27.4 1.1E+02 0.0024 24.7 4.5 31 93-124 54-85 (96)
153 TIGR01282 nifD nitrogenase mol 27.3 4.9E+02 0.011 28.5 10.6 37 94-132 334-370 (466)
154 smart00450 RHOD Rhodanese Homo 26.6 1.4E+02 0.003 23.5 4.9 29 93-122 54-82 (100)
155 cd01518 RHOD_YceA Member of th 26.4 1.1E+02 0.0025 25.2 4.5 28 94-122 60-87 (101)
156 cd01529 4RHOD_Repeats Member o 26.2 1.2E+02 0.0026 24.8 4.5 29 93-122 54-82 (96)
157 PRK07313 phosphopantothenoylcy 26.1 1E+02 0.0022 29.3 4.5 33 95-127 1-35 (182)
158 COG1856 Uncharacterized homolo 25.8 1.2E+02 0.0025 30.5 4.8 54 97-157 56-118 (275)
159 PLN02828 formyltetrahydrofolat 25.7 2.7E+02 0.0058 28.4 7.6 59 95-158 70-132 (268)
160 PRK10310 PTS system galactitol 25.5 1.2E+02 0.0026 25.6 4.3 16 97-112 4-19 (94)
161 cd03466 Nitrogenase_NifN_2 Nit 25.2 5.4E+02 0.012 27.6 10.4 61 94-159 299-360 (429)
162 cd01524 RHOD_Pyr_redox Member 25.2 1.3E+02 0.0029 24.2 4.6 30 93-123 49-78 (90)
163 PRK06852 aldolase; Validated 24.9 1.7E+02 0.0036 30.5 6.1 87 121-228 135-228 (304)
164 TIGR00655 PurU formyltetrahydr 24.8 4.8E+02 0.01 26.6 9.4 82 64-157 54-140 (280)
165 cd01453 vWA_transcription_fact 24.5 3.2E+02 0.007 25.6 7.6 59 96-161 108-171 (183)
166 TIGR02113 coaC_strep phosphopa 24.4 1.3E+02 0.0028 28.5 4.8 35 96-131 1-38 (177)
167 cd01965 Nitrogenase_MoFe_beta_ 24.2 4.2E+02 0.009 28.4 9.3 60 94-158 298-358 (428)
168 KOG2862 Alanine-glyoxylate ami 24.2 2.8E+02 0.0062 29.2 7.4 57 90-149 87-143 (385)
169 COG1043 LpxA Acyl-[acyl carrie 23.9 1.4E+02 0.0031 30.1 5.1 61 357-428 197-257 (260)
170 PRK08463 acetyl-CoA carboxylas 23.9 6.7E+02 0.015 27.3 10.9 32 96-129 3-34 (478)
171 COG0607 PspE Rhodanese-related 23.8 1E+02 0.0023 25.4 3.7 31 93-124 59-89 (110)
172 TIGR01860 VNFD nitrogenase van 23.8 4.2E+02 0.0092 28.9 9.3 53 85-139 317-369 (461)
173 TIGR03190 benz_CoA_bzdN benzoy 23.7 8.8E+02 0.019 25.6 12.6 124 65-219 203-328 (377)
174 COG0452 Dfp Phosphopantothenoy 23.5 1.1E+02 0.0023 32.9 4.6 34 95-129 4-40 (392)
175 PRK08057 cobalt-precorrin-6x r 23.1 6.9E+02 0.015 25.0 10.0 66 98-166 4-81 (248)
176 PRK13011 formyltetrahydrofolat 22.9 2.9E+02 0.0063 28.3 7.4 54 95-158 89-146 (286)
177 PRK07178 pyruvate carboxylase 22.6 5E+02 0.011 28.3 9.6 33 96-130 3-35 (472)
178 PLN02428 lipoic acid synthase 22.6 4.1E+02 0.0089 28.2 8.6 24 188-211 299-322 (349)
179 PRK05920 aromatic acid decarbo 22.5 1.4E+02 0.0031 29.0 4.9 33 95-127 3-37 (204)
180 COG1179 Dinucleotide-utilizing 22.2 4.8E+02 0.01 26.6 8.4 115 96-222 31-165 (263)
181 PF03848 TehB: Tellurite resis 21.8 1.8E+02 0.004 28.0 5.4 60 90-158 27-87 (192)
182 cd01520 RHOD_YbbB Member of th 21.5 1.7E+02 0.0037 25.6 4.8 37 93-132 84-121 (128)
183 cd01977 Nitrogenase_VFe_alpha 21.5 4.8E+02 0.01 27.9 9.0 60 94-158 287-346 (415)
184 KOG3425 Uncharacterized conser 21.4 2.5E+02 0.0055 25.4 5.6 41 93-133 23-76 (128)
185 TIGR03445 mycothiol_MshB 1D-my 21.2 5.5E+02 0.012 26.2 9.0 90 113-209 19-129 (284)
186 PF13720 Acetyltransf_11: Udp 21.2 1.8E+02 0.0038 24.1 4.5 50 368-427 30-79 (83)
187 COG1064 AdhP Zn-dependent alco 20.5 3.9E+02 0.0085 28.2 7.8 59 85-155 158-216 (339)
188 COG1341 Predicted GTPase or GT 20.4 1E+02 0.0022 33.1 3.6 38 96-133 72-114 (398)
189 PF02677 DUF208: Uncharacteriz 20.3 3E+02 0.0066 26.3 6.4 84 96-186 83-171 (176)
190 cd01519 RHOD_HSP67B2 Member of 20.3 1.6E+02 0.0035 24.2 4.2 30 94-124 65-95 (106)
191 PF02585 PIG-L: GlcNAc-PI de-N 20.1 3.4E+02 0.0074 23.4 6.4 76 113-210 19-107 (128)
192 PRK13010 purU formyltetrahydro 20.0 3.3E+02 0.0072 27.9 7.1 83 64-158 64-150 (289)
No 1
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-121 Score=925.82 Aligned_cols=396 Identities=59% Similarity=0.997 Sum_probs=388.3
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++||++|||||+||||++.||++++|++|+++++|+||+++|++.++++|.++|+.+++++|++++|+++++.|++++|+
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana 83 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA 83 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence 47999999999999999999999967999999999999878999999999999998899999999999999999999999
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAK 254 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~ 254 (493)
.|+|.||++++++||+|.+.++++|++.||++||||||++||||+||+.++.+++|++++|+|||+|.+ +|+++++||+
T Consensus 84 ~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe~~~~al~p~lkiiAP~Rew~~-~R~~~i~Ya~ 162 (403)
T COG0137 84 LYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELAILALNPDLKIIAPWREWNL-TREEEIEYAE 162 (403)
T ss_pred eeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeeeeehhhhCCCcEEEeehhhhcc-ChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred HCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHH
Q 011097 255 KHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASL 334 (493)
Q Consensus 255 ~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~ 334 (493)
++|||+..+.++|||.|+|+||+|+|||.|||||+.||+++|.||++|+++|++|++++|+|++|.||++||+.++++++
T Consensus 163 ~~gipv~~~~~kpySiD~Nlwg~S~Egg~LEdp~~~pped~~~~tv~p~dap~~pe~v~I~Fe~G~PValnG~~~~~~~l 242 (403)
T COG0137 163 EHGIPVKATKEKPYSIDENLWGRSIEGGDLEDPWNEPPEDAYEWTVSPEDAPDEPEEVEIGFEKGVPVALNGEKLSPVEL 242 (403)
T ss_pred HcCCCccccCCCCcccchhhhccccccccccCcCcCCCchHHhhcCChhhCCCCCeEEEEEEecCeEEEEcCEeCCHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHH-HHHHHHHHhhcccCccH
Q 011097 335 LAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDS-LALKYAELVYAGRWFDP 413 (493)
Q Consensus 335 i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~-~~~~~~~lvy~G~w~~p 413 (493)
+.+||+|||+|||||+|+||||+||+|||||||+||+++|++||++||++||||+++++|+. ++++||+|||+|+||||
T Consensus 243 i~~lN~i~g~hGvGRiD~vEnR~vG~KSRevYE~Pg~tiL~~Ah~~LE~ltl~r~~~~~k~~~~~~~~a~lvY~GlWf~P 322 (403)
T COG0137 243 ILELNEIAGRHGVGRIDIVENRLVGIKSREVYEAPGATILLTAHRALESLTLDREEAHFKDIELGPKYAELVYNGLWFSP 322 (403)
T ss_pred HHHHHHHHhhcCCCchheeehheeeeecchhccCchHHHHHHHHHHHHhheecHHHHhhhhhhhHHHHHHHHhCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHhc
Q 011097 414 LRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER 491 (493)
Q Consensus 414 ~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~~ 491 (493)
++++|++|++.+|++|||+|+|+|||||++++||+||+|||+++++||++++.|+|.+|+|||++|||++++.+++.+
T Consensus 323 l~~~L~a~~~~~q~~VtG~V~lkL~kG~~~v~gr~S~~slY~~~l~t~~~~~~~dq~~a~GFi~~~~l~~k~~~~~~~ 400 (403)
T COG0137 323 LREALRAFIDETQEHVTGEVRLKLYKGNVYVIGRKSPNSLYSEELATYEEGDAFDQRDAQGFIKLHGLRSKLAARVKK 400 (403)
T ss_pred HHHHHHHHHHHHHhhcceEEEEEEECCeEEEEeccCCccccChhhcccccccCcchhHhhHHHHHhccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987764
No 2
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=100.00 E-value=1.5e-114 Score=895.50 Aligned_cols=387 Identities=61% Similarity=1.042 Sum_probs=342.3
Q ss_pred EEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccC
Q 011097 99 VLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYER 178 (493)
Q Consensus 99 vVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g 178 (493)
|||||||+|||+++.||+++++++|+|+++|+||+.+|++.+++.|.++|+.+++++|++++|++++++|+|++|+.|+|
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg 80 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYEG 80 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BTT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999559999999999997689999999999999989999999999999999999999999999
Q ss_pred cccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHHHCCC
Q 011097 179 KYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNV 258 (493)
Q Consensus 179 ~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~~GI 258 (493)
+||+++++.|+++.+.++++|++.||++||||+|++||||+||+.++.++.|++++++|||+|.+ +|+|.++||+++||
T Consensus 81 ~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~viaP~Rd~~~-~R~~~i~ya~~~gI 159 (388)
T PF00764_consen 81 RYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALAPELKVIAPWRDWEF-SREEEIEYAKKHGI 159 (388)
T ss_dssp TB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-GGGHHHH-HHHHHHHHHHHTT-
T ss_pred CccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCcCCcEecccchhhh-hHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988 69999999999999
Q ss_pred CCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHHHHHH
Q 011097 259 PVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAEL 338 (493)
Q Consensus 259 p~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~i~~l 338 (493)
|+..+.++|||.|+||||+|||||.||||+++||+++|.||++|.++|++|++++|+|++|.||++||+++++++++.+|
T Consensus 160 pv~~~~~~~yS~D~Nlwg~s~E~g~Ledp~~~~p~~~~~~t~~p~~ap~~pe~v~i~Fe~G~PVavnG~~~~~~~li~~l 239 (388)
T PF00764_consen 160 PVPVTKKKPYSIDENLWGRSIEGGELEDPWNEPPEDAFEWTVDPEDAPDEPEEVTITFEKGVPVAVNGKKMPPLELIEKL 239 (388)
T ss_dssp ---SS---SSEEEEESSEEEEESGGGGSTTSGG-GGGSSSSTTTTTS-SS-EEEEEEEETTEEEEECTEEESCHHHHHHH
T ss_pred CCCCCCCCCCCcccccccccccCccccccccCCCHHHhcccCChhHCCCCCeEEEEEEECcEEEEEecccccHHHHHHHH
Confidence 99887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHHHHH
Q 011097 339 NEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESI 418 (493)
Q Consensus 339 n~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~~~l 418 (493)
|+|||+|||||+|++|||+||+||||||||||++||++|||+||++||||+++++|++++++|+++||+|+||||+++++
T Consensus 240 N~i~G~~GvGr~d~vE~r~vG~KsR~vyEaPaa~iL~~Ahr~LE~~~Ldr~~~~~K~~l~~~~~~lvy~G~wf~Pl~~~l 319 (388)
T PF00764_consen 240 NEIGGRHGVGRIDIVEDRIVGIKSRGVYEAPAATILIAAHRDLESLTLDREVLRFKRQLSQKWAELVYEGRWFSPLREAL 319 (388)
T ss_dssp HHHHHHTTTTEEEEEEE-TTSSEEEEEEE-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHT-TTSHHHHHH
T ss_pred HHHHHhCeECcccccccchhhhcccceecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHH
Q 011097 419 DAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVR 486 (493)
Q Consensus 419 ~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~ 486 (493)
++||+++|++|||+|+|+||||+++++||+||+|||+++++||++++.|+|.||+|||+|||||+|++
T Consensus 320 ~afi~~~q~~VtG~V~l~L~kG~~~v~g~~S~~sLY~~~~as~~~~~~f~~~da~GFi~i~~l~~~~~ 387 (388)
T PF00764_consen 320 DAFIDSSQERVTGTVRLKLYKGNVIVVGRESPYSLYSEDLASYEEGDGFDQEDAEGFIKIWGLPLKVY 387 (388)
T ss_dssp HHHHHHHHTT--EEEEEEEETTEEEEEEEE-TTSTT-CCCC--SS--SS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCceeEEEEEEEECCceEEEEeeCCcccCCcccccccCCCCCChHHHHHHHHHcCchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999976
No 3
>PLN00200 argininosuccinate synthase; Provisional
Probab=100.00 E-value=6.3e-113 Score=891.20 Aligned_cols=397 Identities=84% Similarity=1.314 Sum_probs=384.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
+||+||||||+||+++++||++++|++|+|+|+|+||+.+|++.++++|+++|+++++++|++++|.++++.|++++|+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i~p~i~~Na~ 85 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLRANAI 85 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhcCHHHHcCCc
Confidence 69999999999999999999987799999999999996578999999999999955799999999999999999999999
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHHH
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKK 255 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~ 255 (493)
|++||+|+++++|+++++.+.++|++.|+++||||||++||||.||+.++.++.|++.+++||+++.+++|+|+++||++
T Consensus 86 ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~~~~al~pel~ViaPlre~~~~~r~e~~~~A~~ 165 (404)
T PLN00200 86 YEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALNPELKVVAPWREWDIKGREDLIEYAKK 165 (404)
T ss_pred ccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHHHHHHhCCCCeeeCchhhcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988569999999999
Q ss_pred CCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHHH
Q 011097 256 HNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLL 335 (493)
Q Consensus 256 ~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~i 335 (493)
+|||+..+.+.|||.|+||||+|+|||.||||+++||+++|.||++|.++|++|++++|+|++|.||+|||+++++++++
T Consensus 166 ~Gipv~~~~~~~yS~D~Nlw~~s~e~g~ledp~~~~p~~~~~~t~~~~~~p~~p~~v~i~Fe~G~pv~lnG~~~~~~~li 245 (404)
T PLN00200 166 HNIPVPVTKKSIYSRDRNLWHISYEGDILEDPANEPKEDMFMMSVSPEAAPDQPEYIEIEFEKGLPVAINGKTLSPATLL 245 (404)
T ss_pred cCCCCCCCCCCCCcccccccceecccccccCCCCCCCHHHhhccCCHhHCCCCCeEEEEEEEccEEEEECCeeCCHHHHH
Confidence 99998766788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHH
Q 011097 336 AELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLR 415 (493)
Q Consensus 336 ~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~ 415 (493)
.+||+|||+|||||+|++|||+||+||||||||||++||++|||+||++||||+++++|+.++++|+++||+|+||||++
T Consensus 246 ~~lN~i~g~~GvGr~d~vE~r~vG~KsR~vyEaPa~~iL~~Ah~~LE~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~ 325 (404)
T PLN00200 246 TKLNEIGGKHGIGRIDMVENRFVGMKSRGVYETPGGTILFAAHRELESLTLDRETMQVKDSLALKYAELVYNGFWFDPER 325 (404)
T ss_pred HHHHHHHhhcccCcccccccccccccccceecChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCC-CCCccccchhHHhhchHHHHHHHHhcC
Q 011097 416 ESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQ-IYDQADAAGFIRLYGLPMRVRAMLERG 492 (493)
Q Consensus 416 ~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~-~~~~~~a~gfi~~~~~~~~~~~~~~~~ 492 (493)
++|++||+++|++|||+|+|+||||+++++||+||+|||+++++||++.+ .|+|+||+|||+||||+++++++.++.
T Consensus 326 ~~l~a~i~~~q~~V~G~V~l~l~kG~~~~~g~~s~~sly~~~~as~~~~~~~~~~~~a~Gfi~~~~l~~~~~~~~~~~ 403 (404)
T PLN00200 326 ESMDAFMEKITETTTGSVRLKLYKGNVSVAGRKSPYSLYRQDISSFEEGGGIYNQADAAGFIRLYALRLRTRAMLRKK 403 (404)
T ss_pred HHHHHHHHHHhCCceEEEEEEEeCCceeEeeeeCCcccccchhceeecCCCCcCHHHhHHHHHHcChHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999765 599999999999999999999987654
No 4
>PRK00509 argininosuccinate synthase; Provisional
Probab=100.00 E-value=2e-112 Score=886.20 Aligned_cols=395 Identities=63% Similarity=1.107 Sum_probs=382.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++||+||||||+||+++++||++++|++|+|+|+|+||. +|++.++++|+++|+++++++|++++|.+++++|++++|+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~-~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~ 80 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG-EELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH-HHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhCh
Confidence 369999999999999999999987799999999999996 7899999999999986789999999999999999999999
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAK 254 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~ 254 (493)
.|+|+||++|++||+++++.+.++|++.|+++||||||++||||.+|+.++.++.|++.+++||+++.+.+|+|+++||+
T Consensus 81 ~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~~g~~al~pel~VisPlre~~~~tK~eir~~A~ 160 (399)
T PRK00509 81 LYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLKSREELIAYAE 160 (399)
T ss_pred HhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHHHHHHHHhCCCCeeecchhhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998756999999999
Q ss_pred HCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHH
Q 011097 255 KHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASL 334 (493)
Q Consensus 255 ~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~ 334 (493)
++|||+..+.++|||.|+|+||+|+|||+||||+++||+++|.||++|+++|++|++++|+|++|.||+|||++++++++
T Consensus 161 ~~Gipv~~~~~~~yS~d~Nlw~~s~e~g~ledp~~~~p~~~~~~t~~~~~~p~~p~~v~i~F~~G~pvalnG~~~~~~~l 240 (399)
T PRK00509 161 EHGIPIPVTKKSPYSIDANLWHRSIEGGILEDPWNEPPEDVYEWTVSPEDAPDEPEYVEIEFEKGVPVAINGEALSPAEL 240 (399)
T ss_pred HcCCCCCCCCCCCCccccccccccccccccCCcCcCCCHHHHhhcCCHhHCCCCCeEEEEEEEccEEEEEcCeeCCHHHH
Confidence 99999987778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHH
Q 011097 335 LAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPL 414 (493)
Q Consensus 335 i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~ 414 (493)
+.+||+|||+|||||+|++|||+||+||||||||||++||++|||+||++||||+++++|+.++++|+++||+|+||+|+
T Consensus 241 i~~lN~i~g~~GvGr~d~vE~r~vG~KsR~vyEaP~~~iL~~Ah~~LE~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~ 320 (399)
T PRK00509 241 IEELNELAGKHGIGRIDIVENRLVGIKSRGVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPL 320 (399)
T ss_pred HHHHHHHHhhcccCcccccccccccccccceecChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHh
Q 011097 415 RESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLE 490 (493)
Q Consensus 415 ~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~ 490 (493)
|++|++||+++|++|||+|+|+||||+++++||+||+|||+++++||++.+.|+|+||+|||+||||++++++..+
T Consensus 321 ~~~l~~~i~~~q~~V~G~V~l~l~kG~~~~~g~~s~~sly~~~~as~~~~~~~~~~~a~Gfi~~~~l~~~~~~~~~ 396 (399)
T PRK00509 321 REALQAFIDETQEHVTGEVRLKLYKGNAIVVGRKSPNSLYDEDLATYEEDDVYDQKDAEGFIKLWGLPSKIAALVN 396 (399)
T ss_pred HHHHHHHHHHHhCCceEEEEEEEECCeEEEeeccCCccccCchhccccCCCCCCHHHhHHHHHHcchHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999997757999999999999999999988764
No 5
>PRK13820 argininosuccinate synthase; Provisional
Probab=100.00 E-value=5.8e-111 Score=874.83 Aligned_cols=392 Identities=51% Similarity=0.855 Sum_probs=378.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCC-eEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~-eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++||+||||||+||+++++||++.+|+ +|+|+|+|+||+.+|++.++++|+++|+ +++++|++++|.++++.|++++|
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi-~~~vvd~~eef~~~~i~~~i~~n 80 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGD-KHYTIDAKEEFAKDYIFPAIKAN 80 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCCChHHHHHHHHHHHHcCC-CEEEEeCHHHHHHHHHHHHHHhC
Confidence 479999999999999999999987798 9999999999966789999999999999 89999999999999999999999
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHH
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYA 253 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA 253 (493)
+.|++ ||++|++||+++++.+.++|++.|+++||||||+++|||.||+..+.++ ++.+++||+++.+ +|+|+++||
T Consensus 81 ~~~~g-Ypl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~--~l~viaP~re~~l-tK~ei~~ya 156 (394)
T PRK13820 81 ALYEG-YPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRAS--DLEVIAPIRELNL-TREWEIEYA 156 (394)
T ss_pred ccccC-CcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhh--cCeeeCchhccCC-CHHHHHHHH
Confidence 99888 9999999999999999999999999999999999999999999998887 6899999999888 799999999
Q ss_pred HHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHH
Q 011097 254 KKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPAS 333 (493)
Q Consensus 254 ~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~ 333 (493)
+++|||+..+.+.|||+|+||||+|+|||.||||++.||+++|.||++|+++||+|++++|+|++|.||+|||+++++++
T Consensus 157 ~~~gip~~~~~~~~yS~d~nlw~~s~e~g~ledp~~~~p~~~~~~t~~p~~~p~~p~~v~i~F~~G~pv~lng~~~~~~~ 236 (394)
T PRK13820 157 KEKGIPVPVGKEKPWSIDENLWSRSIEGGKLEDPAFEPPEEIYAWTVSPEDAPDEPEIVEIEFEEGVPVAINGEKMDGVE 236 (394)
T ss_pred HHcCCCCCcCCCCCcccccccccccccccccCCCCcCcchHHHhccCCHhHCCCCCeEEEEEEEccEEEEECCeeCCHHH
Confidence 99999998777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccH
Q 011097 334 LLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDP 413 (493)
Q Consensus 334 ~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p 413 (493)
++.+||+|||+|||||+|++|||+||+||||||||||++||++|||+||++||||+++++|+.++++|+++||+|+||+|
T Consensus 237 li~~lN~i~g~~GvGr~d~ve~r~vG~KsR~vyE~P~~~iL~~Ah~~LE~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p 316 (394)
T PRK13820 237 LIRKLNEIAGKHGVGRTDMMEDRVLGLKSRENYEHPAATVLLTAHKALEQLVLTREELKFKEIVDSKWAELAYEGLVDEP 316 (394)
T ss_pred HHHHHHHHHhhcccCccccccccccccccceeecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHhcC
Q 011097 414 LRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLERG 492 (493)
Q Consensus 414 ~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~~~ 492 (493)
+|++|++||+++|++|||+|+|+||||++.++||+||+|||++++|||++.+ |+|.||+|||+||||++++++..+++
T Consensus 317 ~~~~l~a~i~~~q~~V~G~V~l~l~kg~~~~~~~~s~~sly~~~~a~~~~~~-~~~~~a~Gfi~~~~~~~~~~~~~~~~ 394 (394)
T PRK13820 317 LREDLNAFIDKTQERVTGTVTVKLYKGSARVVGRESPYALYSEELVSFDSKT-IDQRDAEGMAKYHGLQARLYNKVKRK 394 (394)
T ss_pred HHHHHHHHHHHhhCcceEEEEEEEECCeEEEeeeeCCccccCchhceecCCC-CCHHHhHHHHHHccHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999665 99999999999999999999887643
No 6
>PRK04527 argininosuccinate synthase; Provisional
Probab=100.00 E-value=1.2e-110 Score=870.32 Aligned_cols=389 Identities=32% Similarity=0.514 Sum_probs=375.0
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
+||+||||||+||+++++||+++ |++|+|+|+|+||. .+|++.++++|+++|+.+|+++|++++|.++++.|++++|+
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~-G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa 81 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQER-GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGE 81 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHc-CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcch
Confidence 68999999999999999999996 99999999999994 47899999999999986699999999999999999999999
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCC---CHHHHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQ---GREDAIE 251 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~---sKeEi~~ 251 (493)
.|+|+||++| |+|+++++.+.++|+++|+++||||+|+++|||.||+..+.++. ++.+++||+++.++ +|+|+++
T Consensus 82 ~y~G~yPl~~-~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~-el~ViaPlre~~~~k~~~R~~~i~ 159 (400)
T PRK04527 82 GYQGQYPLLV-SDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG-DYQIVAPIREIQKEHTQTRAYEQK 159 (400)
T ss_pred hhcCCCCCcc-ccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHHHHhh-cCCccchHHHhcCcccccHHHHHH
Confidence 9999999999 49999999999999999999999999999999999999999998 89999999999873 6899999
Q ss_pred HHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecCh
Q 011097 252 YAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSP 331 (493)
Q Consensus 252 yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~ 331 (493)
||++||||+..+ +.+||+|+||||+|+|||+| |||++||+++|.||++|.++||+|++++|+|++|.||++||+++++
T Consensus 160 ya~~~gipv~~~-~~~yS~D~Nlw~~s~E~g~L-dp~~~~~~~~~~~t~~p~~ap~~p~~v~i~Fe~G~pv~lnG~~~~~ 237 (400)
T PRK04527 160 YLEERGFGVRAK-QKAYTINENLLGVTMSGGEI-DRWEAPGEGARGWCAPRSAWPTEALTVTIKFVEGEAVALDGKPLPG 237 (400)
T ss_pred HHHHcCCCCCCC-CCCcccccchhheecccCCC-CcCcCCCHHHHHhcCCHhHCCCCCeEEEEEEEccEEEEECCEeCCH
Confidence 999999999765 45599999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCc
Q 011097 332 ASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWF 411 (493)
Q Consensus 332 ~~~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~ 411 (493)
.+++.+||+|||+|||||+|++|||+||+||||||||||++||++|||+||++||||+++++|+.++++|+++||+|+||
T Consensus 238 ~~li~~lN~i~g~~GvGr~d~vEnr~vG~KsR~vyEaP~~~iL~~Ah~~LE~~~l~r~~~~~k~~~~~~~a~lvY~G~w~ 317 (400)
T PRK04527 238 AQILAKLNKLFAQYGVGRGVYTGDTVIGLKGRIVFEAPGLVSLLTAHRALEDAVLTKQQNRFKPDVARKWVELVYEGFYH 317 (400)
T ss_pred HHHHHHHHHHHhhcccCceeeecccccccccceeccChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHh
Q 011097 412 DPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLE 490 (493)
Q Consensus 412 ~p~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~ 490 (493)
||+|++|++||+++|++|||+|+|+||||+++++||+||+ ||++++|||++.+.|+|.||+|||+||||++++++.++
T Consensus 318 ~P~~~~l~a~i~~~q~~V~G~V~l~l~kG~~~~~gr~S~~-ly~~~~as~~~~~~~~~~da~GFi~i~~l~~~~~~~~~ 395 (400)
T PRK04527 318 DPLKTDIEAFLKSSQAKVNGEVTLETRGGRVDAVAVRSPH-LLNSKGATYAQSADWGVEEAEGFIKLFGMSSTLYAQVN 395 (400)
T ss_pred chHHHHHHHHHHHHhCcceEEEEEEEECCeEEEEeeeccc-ccChhcceecCCCCCChHHhHHHHHHhhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999 99999999997777999999999999999999998765
No 7
>PRK05370 argininosuccinate synthase; Validated
Probab=100.00 E-value=1.2e-109 Score=862.75 Aligned_cols=386 Identities=32% Similarity=0.529 Sum_probs=370.3
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHh
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~ 172 (493)
+++||+||||||+||||++.||+++ |++|+|+++|+||+ ++|++.+++.|.++|+++++++|++++|+++++ |+|++
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i-~aI~a 87 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI-AAIQC 87 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHH-HHHHc
Confidence 4689999999999999999999998 99999999999995 478999999999999988999999999999998 99999
Q ss_pred Cccc----cCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCC----
Q 011097 173 GAIY----ERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQ---- 244 (493)
Q Consensus 173 ~a~y----~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~---- 244 (493)
|+.| +++|+++++++|+++.+.++++|++.||++||||+|++||||+||+.++.++.|++++|+|||+|.+.
T Consensus 88 nA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaPwRd~~~~~~f~ 167 (447)
T PRK05370 88 GAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKPWLDQDFIDELG 167 (447)
T ss_pred CCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecchhhhhcccccC
Confidence 9999 88999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCC-----chhhhhcccCCCCCCCCCCceeEEEeeec
Q 011097 245 GREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENE-----PKKDMYMMSVDPEDAPNQPEYIEIGIVSG 319 (493)
Q Consensus 245 sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~-----~~~~~~~~t~~~~~~p~~~~~~~i~F~~G 319 (493)
+|+|.++||++||||+..+.++|||.|+||||+|+|||+||||+++ ||+++|.||.+|.. +|++++|+|++|
T Consensus 168 sR~e~i~Ya~~hGIpv~~~~~~~ySiD~NLwg~S~Egg~LEdp~~~~~~~~pp~~~~~~t~~~~~---~pe~v~I~Fe~G 244 (447)
T PRK05370 168 GRAEMSEFLIAHGFDYKMSVEKAYSTDSNMLGATHEAKDLEHLNSGIKIVNPIMGVAFWDEDVEI---KAEEVTVRFEQG 244 (447)
T ss_pred CHHHHHHHHHHcCCCCCccCCCCccCccChheeeeccccccCcccccccCCChHHHHhccCCccc---CCeEEEEEEeee
Confidence 7999999999999999877788999999999999999999999987 88999999998876 689999999999
Q ss_pred ccEEecCeecC-hHHHHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q 011097 320 IPVSVNGKKLS-PASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLA 398 (493)
Q Consensus 320 ~pV~inG~~l~-~~~~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~ 398 (493)
.||+|||++++ +++++.+||+|||+|||||+|++|||+||+|||+||||||++||++|||+||++||||+++++|+.++
T Consensus 245 ~PValnG~~~~~p~eli~~LNeIgG~hGVGrid~vEnR~vGiKsR~vYEaPgatiL~~Ahr~LE~l~Ldr~~~~~K~~~~ 324 (447)
T PRK05370 245 RPVALNGKTFSDPVELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRING 324 (447)
T ss_pred EEEEEcCEeCCcHHHHHHHHHHHHhhcccCceeeecccccceecceeccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCccHH----HHHHHHHHHHhcCceeeEEEEEEeCceE-EEEeeeCCCCCCccccccccC-C-CCCCccc
Q 011097 399 LKYAELVYAGRWFDPL----RESIDAFMENITKTTTGSVTLKLYKGSV-SVTGRTSPKSLYRQDISSFES-G-QIYDQAD 471 (493)
Q Consensus 399 ~~~~~lvy~G~w~~p~----~~~l~~~i~~~q~~v~G~V~l~l~kG~~-~~~~~~s~~sly~~~~~s~~~-~-~~~~~~~ 471 (493)
++|+++||+|+||+|+ |+++++||+ ++|||+|+|+||||++ +++||+||+|||+++++||++ + ..|+|.|
T Consensus 325 ~~~a~lvY~G~wfsPl~~~~r~~l~afi~---~~VtG~V~l~LyKG~~~~v~gr~S~~sLY~~~~as~~~~~~~~~~~~d 401 (447)
T PRK05370 325 RRLGRLLYQGRWFDPQALMLRESLQRWVA---SAITGEVTLELRRGNDYSILNTVSPNLTYKPERLSMEKVESAAFSPDD 401 (447)
T ss_pred HHHHHHHhcccccCCcchHHHHHHHHHHh---CCccEEEEEEEECCccceEeeEeCCccccChhhCccccccCCCCChHH
Confidence 9999999999999998 999999998 9999999999999997 999999999999999999996 3 4599999
Q ss_pred cchhHHhhchHHHHHH
Q 011097 472 AAGFIRLYGLPMRVRA 487 (493)
Q Consensus 472 a~gfi~~~~~~~~~~~ 487 (493)
|+|||+||||+.+..+
T Consensus 402 a~GFi~i~gl~~~~~~ 417 (447)
T PRK05370 402 RIGQLTMRNLDITDTR 417 (447)
T ss_pred hhhHHHHhCCcHHHHH
Confidence 9999999999988654
No 8
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=100.00 E-value=1.1e-108 Score=857.73 Aligned_cols=384 Identities=61% Similarity=1.050 Sum_probs=371.8
Q ss_pred EEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcccc
Q 011097 98 VVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYE 177 (493)
Q Consensus 98 VvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~ 177 (493)
|+||||||+||+++++||+++++++|+|+|+|+||..++++.++++|+++|+++++++|++++|.++++.|++++++.|+
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~~ 80 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALYE 80 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCcccc
Confidence 68999999999999999998755699999999999655569999999999995699999999999999999999999999
Q ss_pred CcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccC-CCCCHHHHHHHHHHC
Q 011097 178 RKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW-DIQGREDAIEYAKKH 256 (493)
Q Consensus 178 g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~-~l~sKeEi~~yA~~~ 256 (493)
+.|+++|++||+++++.+.++|++.|+++||||+|+++||+.||+..+.++.|++.+++||+++ .+ +|+|+++||+++
T Consensus 81 g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~pel~ViaPlre~~~~-sr~ev~~~A~~~ 159 (385)
T cd01999 81 GTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALNPDLKIIAPWRDWEFL-SREEEIEYAEEH 159 (385)
T ss_pred CCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhCCCCEEEcchhhhhcC-CHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 77 799999999999
Q ss_pred CCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHHHH
Q 011097 257 NVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLA 336 (493)
Q Consensus 257 GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~i~ 336 (493)
|||+..+.+||||+|.||||+|+|||.||||+++||+++|.||++|+++|++|++++|+|++|.||++||+++++.+++.
T Consensus 160 Gip~~~~~~~pyS~d~nl~~~s~e~g~le~~~~~~~~~~~~~t~~~~~~p~~p~~v~i~F~~G~pv~lng~~~~~~~li~ 239 (385)
T cd01999 160 GIPVPVTKKKPYSIDENLWGRSIEGGILEDPDNEPPEDAYEWTVSPEDAPDEPEYVEIEFEKGVPVALNGEKLDPVELIL 239 (385)
T ss_pred CCCCcccCCCCCccCCCcceeecccccccCCCcCCChhHHhhcCCHhHCCCCCeEEEEEEEccEEEEEcCeeCCHHHHHH
Confidence 99998777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHHH
Q 011097 337 ELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRE 416 (493)
Q Consensus 337 ~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~~ 416 (493)
+||+|||+|||||+|++|||+||+||||||||||+|||++|||+||++||||+++++|+.++++|+++||+|+||||+|+
T Consensus 240 ~lN~i~g~~GvGr~d~ve~r~vG~Ksr~vyE~P~~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~~ 319 (385)
T cd01999 240 ELNEIAGKHGVGRIDIVENRVIGIKSREVYEAPGATILIKAHRDLESLTLDREVLHFKDIVDPKYAELVYNGLWFSPLRE 319 (385)
T ss_pred HHHHHHHhcCcCcccccccccccccccceecCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchH
Q 011097 417 SIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLP 482 (493)
Q Consensus 417 ~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~ 482 (493)
+|++||+++|++|||+|+|+||||++.++||+||+|||+++++||++.+.|+|.||+|||+||||+
T Consensus 320 ~l~~~i~~~q~~V~G~V~l~l~kG~~~~~~~~s~~~ly~~~~~s~~~~~~~~~~~a~Gfi~~~~~~ 385 (385)
T cd01999 320 ALEAFIDKTQERVNGTVRLKLYKGNVIVVGRESPNSLYSEELASYDEDGGFDQKDAEGFIKIHGLR 385 (385)
T ss_pred HHHHHHHHHhCceeEEEEEEEECCeEEEeeeeCCcccccchhccccCCCCCChHHhHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999987789999999999999985
No 9
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=100.00 E-value=8.4e-108 Score=853.28 Aligned_cols=392 Identities=50% Similarity=0.889 Sum_probs=379.9
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIY 176 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y 176 (493)
||+||||||+||+++++||+++ |++|+|+|+|+||+.+|++.++++|+++|+++++++|++++|.++++++.+++++.|
T Consensus 1 kVvla~SGGlDSsvll~~l~e~-g~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~~~~~i~~n~~y 79 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK-GYEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFY 79 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc-CCEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhchhhhcCCccc
Confidence 6999999999999999999998 999999999999966789999999999998679999999999999899999999999
Q ss_pred cCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHHHC
Q 011097 177 ERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKH 256 (493)
Q Consensus 177 ~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~~ 256 (493)
+++|||+++++|+++++.+.++|++.|+++||||||+++||+.||+.....+.|.+.+++||++|.+ +|+|+++||+++
T Consensus 80 ~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~~~l~viaPLrew~l-~r~ei~~ya~~~ 158 (394)
T TIGR00032 80 EGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWRDLNF-TREEEIEYAIQC 158 (394)
T ss_pred cCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhCCCCeEECchhhcCC-CHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988888999999999999988 799999999999
Q ss_pred CCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCC-CCCCceeEEEeeecccEEecCeecChHHHH
Q 011097 257 NVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDA-PNQPEYIEIGIVSGIPVSVNGKKLSPASLL 335 (493)
Q Consensus 257 GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~-p~~~~~~~i~F~~G~pV~inG~~l~~~~~i 335 (493)
|||+..+..||||.|.|+||+++|++.||||+++||+++|.||++|+++ ||+|++++|+|++|.||+|||+++++.+++
T Consensus 159 Gip~~~~~~~pys~d~nl~G~s~e~~~Led~~~~~~~~~~~~~~~p~~a~p~~p~~v~i~F~~G~pv~ing~~~~~~~li 238 (394)
T TIGR00032 159 GIPYPMSKEKPYSIDENLWGRSIEAGILEDPSTEPPEDIYMWTKFPDEATPDEPEVVTIDFEQGVPVALNGVSLDPVELI 238 (394)
T ss_pred CCCeeEecCCCCcCCHHHcCcEeccchhhCcccCCcHHHHhhcCCHhHcCCCCCeEEEEEEEcceEEEECCccCCHHHHH
Confidence 9999877789999999999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred HHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHH
Q 011097 336 AELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLR 415 (493)
Q Consensus 336 ~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~ 415 (493)
.+||+|||+|||||+|++|||+||+||||||||||++||++|||+||++||||+++++|+.++++|+++||+|+||+|+|
T Consensus 239 ~~lN~i~g~~GvGr~d~ve~r~vg~Ksr~vyE~P~~~~L~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~ 318 (394)
T TIGR00032 239 LEANEIAGKHGVGRIDIIENRIIGLKSREIYEAPGAALLIIAHRDLETLTLTRDVLEFKDIVEEQYSELIYQGLWFDPLA 318 (394)
T ss_pred HHHHHHHHhcccCccccccccccccccceeeeCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHh
Q 011097 416 ESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLE 490 (493)
Q Consensus 416 ~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~ 490 (493)
++|++||+++|++|||+|+|+||||+++++||+||+|||+++++||++++.|+|.||+|||+|+||++++++...
T Consensus 319 ~~l~~~i~~~q~~V~G~V~l~l~kg~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~Gfi~~~~~~~~~~~~~~ 393 (394)
T TIGR00032 319 EALDAFIRKTQERVTGTVRVKLFKGNAIVIGRTSPYSLYDEELVSMEKDDVFDPRDAIGFITMRGLQIKDYREKK 393 (394)
T ss_pred HHHHHHHHHHhCCcEEEEEEEEECCEEEEEEecCCccccCcccceecCCCCCChHHhhHHHHHcCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998777999999999999999999987653
No 10
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-106 Score=790.89 Aligned_cols=394 Identities=53% Similarity=0.927 Sum_probs=379.1
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
..++||+|||||+|+++++.||+++ ||||+|+..|.||. +|++.+++.|.++|++++++.|++++|.+++++|+++++
T Consensus 4 ~~~~vVLAySGgLDTscil~WLkeq-GyeViay~AnvGQ~-edfe~ar~kAlk~Gakk~~~ed~~~eFvedfi~Pa~qs~ 81 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWLKEQ-GYEVIAYLANVGQK-EDFEEARKKALKSGAKKVVVEDVREEFVEDFIWPALQSS 81 (412)
T ss_pred CCceEEEEecCCcCchhhhHHHHhc-CceEEEeeccccch-hhHHHHHHhhhhcCceEEEehhhhHHHHhhcchhhhhhc
Confidence 3478999999999999999999997 99999999999995 899999999999999999999999999999999999999
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCC----CCCHHHH
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDA 249 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~----l~sKeEi 249 (493)
+.|+++|.+|++++|+++.+..+++|++.||.+|+||++++||||+||++.+.++.|++++|+|||... |..|++.
T Consensus 82 a~YEd~YLLGTSlaRp~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P~~kviapwrmp~f~~rf~Gr~Dl 161 (412)
T KOG1706|consen 82 ALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKPDVKVIAPWRMPEFYERFKGRKDL 161 (412)
T ss_pred chhhceeeeccccccchhhhhhhhHHhhcCceeeecccccCCCcceeeeeeeeccCCcceeeccccchHHHHhhcCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999852 4579999
Q ss_pred HHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEec---C
Q 011097 250 IEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVN---G 326 (493)
Q Consensus 250 ~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~in---G 326 (493)
.+||++||||++.|+++|||+|+|+||+|+|+|.||||.|.||+++|.++++|++|||.|+.++|+|++|.||+++ |
T Consensus 162 ~eYakq~giPvpvT~k~pwsmDeNl~HiSyEagiLEdP~nqpp~~m~~~~~DP~~APd~pe~LeI~fekG~Pvklt~vk~ 241 (412)
T KOG1706|consen 162 LEYAKQHGIPVPVTPKNPWSMDENLMHISYEAGILEDPKNQPPKDMYKLTVDPEDAPDTPEILEIEFEKGVPVKLTNVKD 241 (412)
T ss_pred HHHHHhcCCCccccCCCCccccccceeeeeccccccCcCCCCCcccccccCChhhCCCCCceEEEEeecCCceEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred eecC--hHHHHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHH
Q 011097 327 KKLS--PASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAEL 404 (493)
Q Consensus 327 ~~l~--~~~~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~l 404 (493)
.... .++++.+||+++|+||+||+|++|||++|||||||||+||+|||++||.+||.+|||||+.++|+.+..+|+++
T Consensus 242 ~tt~qtSlelf~~ln~vagkhgVGrIDIVENRfigmKSRGiYetp~gTIL~~AhlDle~~TmdrEvrkik~~~~lk~ael 321 (412)
T KOG1706|consen 242 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDLEGFTMDREVRKIKDGLGLKYAEL 321 (412)
T ss_pred CccccchHHHHHHHHHHhcccCcceeeehhhhhhcccccceeeCCCceeeeeeccchhhhhhHHHHHHHHhcccchhhhh
Confidence 5443 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCccHHHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHH
Q 011097 405 VYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMR 484 (493)
Q Consensus 405 vy~G~w~~p~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~ 484 (493)
||+|+||||++++++++|..+|+.|+|+|+|+||||++.|+||+||.|||++++.||+..+.|+|.||+|||+|++|+++
T Consensus 322 vy~G~w~sp~~e~v~~~~~~sqe~v~GkVqvsvyKGqV~IlGresp~sLY~ee~~Smn~~g~y~p~datGFI~I~slrlK 401 (412)
T KOG1706|consen 322 VYTGFWFSPECESVRACIAKSQERVEGKVQVSVYKGQVYILGRESPLSLYNEELVSMNVQGDYEPIDATGFININSLRLK 401 (412)
T ss_pred hhcceecChhHHHHHHHhhcccccccceEEEEEeeceEEEEeccCchhhhccccccccccCCcccccccceEEeeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011097 485 VRAML 489 (493)
Q Consensus 485 ~~~~~ 489 (493)
.++..
T Consensus 402 ey~~~ 406 (412)
T KOG1706|consen 402 EYHRL 406 (412)
T ss_pred hhhhh
Confidence 87743
No 11
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=100.00 E-value=1.6e-39 Score=335.39 Aligned_cols=282 Identities=25% Similarity=0.313 Sum_probs=189.3
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC----------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG----------IKELDGLEEKAKASGACQLVVKDLKEEFVKDY 165 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~----------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~ 165 (493)
+||+||||||+||+|++++|+++ ||+|+++|+..... .+++++|+++|++||| ||+++|++++|.+++
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~-G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI-p~~v~d~~~~f~~~V 78 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ-GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGI-PHYVVDLREEFWEEV 78 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC-T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT---EEEEETHHHHHHHT
T ss_pred CeEEEEccCCHHHHHHHHHHHhh-cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCC-CEEEEChHHHHHHHH
Confidence 58999999999999999999998 99999999987653 1479999999999999 899999999999999
Q ss_pred hhhHHHhCccccCcccccc-cCcHHHHHHHHHHHHHH-cCCcEeeeCCCC--------------CCCChHHHHHHHHhcC
Q 011097 166 IFPCLRAGAIYERKYLLGT-SMARPVIAKAMVDVARE-VGADAVAHGCTG--------------KGNDQVRFELTFFALN 229 (493)
Q Consensus 166 i~~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e-~Gad~IAtGhn~--------------~gnD~~r~~~~~~~l~ 229 (493)
+.|++++.. .|++|+|| .|||.++|..|.+.|++ +|+++|||||.. ++.|..++|+||++..
T Consensus 79 i~~f~~~Y~--~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~~l 156 (356)
T PF03054_consen 79 IEPFLDEYR--KGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLSRL 156 (356)
T ss_dssp HHHHHHHHH--TT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGTT-
T ss_pred HHHHHHHHh--cCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEEec
Confidence 999999832 68999999 79999999999999999 999999999964 3568888999988765
Q ss_pred CC---CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCC
Q 011097 230 PE---LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAP 306 (493)
Q Consensus 230 p~---i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p 306 (493)
++ -++++||+++ +|+|++++|++.|+|+. +++.|++.||++ . ..|..++.
T Consensus 157 ~~~~L~~~~FPLG~~---~K~eVR~iA~~~gl~~a---~k~eSq~iCFi~---~-------------~~~~~fl~----- 209 (356)
T PF03054_consen 157 PQEQLSRLIFPLGEL---TKEEVREIAREAGLPVA---EKKESQGICFIG---D-------------GDYREFLK----- 209 (356)
T ss_dssp -HHHHCCEE-TCCCS----HHHHHHHHHHCT-TTT---T-----SSTTTC---C-------------CHHHHHHC-----
T ss_pred CHHHHHhhcCCCCCC---CHHHHHHHHHhcCCccc---CccccceEEEec---C-------------CcHHHhhh-----
Confidence 53 5899999986 69999999999999964 588999999864 1 11222221
Q ss_pred CCCceeEEEeeecccEEec-CeecChHHHHHHHHHhhhccccceeecccceee---eeecceeEecchHHHHHHHHHHHh
Q 011097 307 NQPEYIEIGIVSGIPVSVN-GKKLSPASLLAELNEIGGRHGIGRIDMVENRLV---GMKSRGVYETPGGTILFSAVQELE 382 (493)
Q Consensus 307 ~~~~~~~i~F~~G~pV~in-G~~l~~~~~i~~ln~ig~r~GiG~~d~ienr~v---G~K~r~vyEaPg~~iL~~Ah~~Le 382 (493)
+++ ..++|++|+++ |+++|.|+++. .||||||+|+|+...-+..+| ..+.+.||..||. -|.+|.
T Consensus 210 ---~~~--~~~~G~ivd~~tG~vlG~H~G~~-~yTiGQRkGlgi~g~~~p~yV~~id~~~N~V~Vg~g~-----~~~~L~ 278 (356)
T PF03054_consen 210 ---RYL--PEKPGPIVDIDTGKVLGEHKGIH-FYTIGQRKGLGIAGYGEPLYVVEIDPETNTVVVGPGY-----DHEDLF 278 (356)
T ss_dssp ---TTS------EEEEETT-S-EEEEES-CC-C--TT-BTTTTTT-TSS-EEEEEEECCCTEEEEEEST-----T-GGGE
T ss_pred ---hcc--ccccCcccccccceeeeeccCee-eEccCCCCCCCCCCCCCeEEEEEEecCCCEEEEeCCc-----ChHHHc
Confidence 111 12479999999 99999999997 799999999997755566776 7778899999976 355555
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhcccCccH-HH----HHHHHHHHHhcCceeeEEEEE
Q 011097 383 SLTLDRETMQVKDSLALKYAELVYAGRWFDP-LR----ESIDAFMENITKTTTGSVTLK 436 (493)
Q Consensus 383 ~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p-~~----~~l~~~i~~~q~~v~G~V~l~ 436 (493)
.-.+.- .+-.|..+ .- ..+..-|++.++.+.++|+..
T Consensus 279 ~~~~~~-----------------~~~~w~~~~~~~~~~~~~~vkiR~~~~~~~~~v~~~ 320 (356)
T PF03054_consen 279 SREFTV-----------------EDFNWISPELPDGNPLECQVKIRYRQKPVPCTVEPI 320 (356)
T ss_dssp EEEEEE-----------------ECEEETT-S--SSCEEEEEEESSTTS--EEEEEEE-
T ss_pred cCEEEE-----------------EeeeeccccCcccCceEEEEEEccCCCCCCEEEEEe
Confidence 544432 24567764 11 135556677777777776654
No 12
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-38 Score=320.08 Aligned_cols=240 Identities=25% Similarity=0.296 Sum_probs=201.4
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-------C-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-------G-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYI 166 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-------~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i 166 (493)
++||+||||||+||||++++|+++ ||+|+|+|+.... . .+|+.+|+++|++||| ||+++|++++|++.++
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGI-p~~~vdf~~~y~~~V~ 80 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGI-PLYVVDFEKEFWNKVF 80 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCC-ceEEEchHHHHHHHHH
Confidence 479999999999999999999998 9999999997543 1 3789999999999999 8999999999999999
Q ss_pred hhHHHhCccccCcccccc-cCcHHHHHHHHHHHHHHcCCcEeeeCCCC------------CCCChHHHHHHHHhcCCC--
Q 011097 167 FPCLRAGAIYERKYLLGT-SMARPVIAKAMVDVAREVGADAVAHGCTG------------KGNDQVRFELTFFALNPE-- 231 (493)
Q Consensus 167 ~~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e~Gad~IAtGhn~------------~gnD~~r~~~~~~~l~p~-- 231 (493)
.+++.... .|++|+|| .|||.++|+.|.++|.++|||+|||||.. ++-|..++|+||+....+
T Consensus 81 ~~f~~~Y~--~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~~q 158 (356)
T COG0482 81 EYFLAEYK--AGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQEQ 158 (356)
T ss_pred HHHHHHHh--CCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCHHH
Confidence 99998732 68999999 68899999999999999999999999965 345777788888754332
Q ss_pred -CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCc
Q 011097 232 -LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPE 310 (493)
Q Consensus 232 -i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~ 310 (493)
-++++|++++ +|.+++++|.++|+|+. +++.|++.||++ ++...+++.. | . |
T Consensus 159 l~~~lFPlG~l---~K~evR~iA~~~gL~~a---~KkdS~~ICFi~---~~~~~~fl~~------~---~--------p- 211 (356)
T COG0482 159 LERLLFPLGDL---EKLEVRPIAAEKGLPTA---KKKDSQGICFIG---ERKFKDFLGR------Y---L--------P- 211 (356)
T ss_pred HhhccccCCCC---CHHHHHHHHHHcCCCcc---CcccCCcceecC---CCCHHHHHHh------h---C--------C-
Confidence 4889999986 69999999999999975 588999888864 2222222211 1 0 1
Q ss_pred eeEEEeeecccEEecCeecChHHHHHHHHHhhhccccceeecc-cceee---eeecceeEecchH
Q 011097 311 YIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMV-ENRLV---GMKSRGVYETPGG 371 (493)
Q Consensus 311 ~~~i~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~GiG~~d~i-enr~v---G~K~r~vyEaPg~ 371 (493)
.++|.+++++|++++.|+++. .||||||+|+|+...- |.++| .+|.+.+|..|+.
T Consensus 212 -----~~~G~ii~~~G~v~g~H~G~~-~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~ 270 (356)
T COG0482 212 -----AKPGEIIDKDGKVLGEHDGLM-YYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGE 270 (356)
T ss_pred -----CCCceEEecCCcEeeecCCEE-EEecccccccCcCCCCCCCEEEEEEecccCeEEEecch
Confidence 157999999999999999986 6999999999988764 66776 8999999999998
No 13
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=100.00 E-value=1.5e-36 Score=314.41 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=219.5
Q ss_pred CCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHH
Q 011097 91 RRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCL 170 (493)
Q Consensus 91 l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i 170 (493)
|+.+++||+||+|||+||++++++|++. |++|++++++... ++.+.++++|+++|| +|+++|++++|.++++.+++
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~~-G~eV~av~~~~~~--~e~~~a~~va~~LGI-~~~vvd~~~~f~~~v~~~~~ 76 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQEQ-GYEIVGVTMRVWG--DEPQDARELAARMGI-EHYVADERVPFKDTIVKNFI 76 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHHc-CCcEEEEEecCcc--hhHHHHHHHHHHhCC-CEEEEeChHHHHHHHHHHhH
Confidence 5566789999999999999999999986 9999999999753 467789999999999 89999999999988888888
Q ss_pred HhCccccCccccccc-CcHHHHHHHHHHHHHHcCCcEeeeCCCC------------CCCChHHHHHHHHhcCCC---CeE
Q 011097 171 RAGAIYERKYLLGTS-MARPVIAKAMVDVAREVGADAVAHGCTG------------KGNDQVRFELTFFALNPE---LNV 234 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~-~~R~l~~~~l~~~A~e~Gad~IAtGhn~------------~gnD~~r~~~~~~~l~p~---i~i 234 (493)
.. .+.|++|++|. |++.+++..|.++|++.|+++|||||++ +++|+.++++||++..++ .++
T Consensus 77 ~~--~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ 154 (362)
T PRK14664 77 DE--YRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDILRRC 154 (362)
T ss_pred HH--HHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcCHHHHhHH
Confidence 64 24788999995 5556789999999999999999999986 478999999998765443 379
Q ss_pred EeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEE
Q 011097 235 VAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEI 314 (493)
Q Consensus 235 i~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i 314 (493)
++||+++ +|+|+++||+++|||+. .++|.|+|.||+. +..-+++.+ | . +. .+ .
T Consensus 155 ifPLg~~---~K~evr~~A~~~gl~~~--a~k~dSq~iCFi~----~~~~~fl~~------~---~-~~----~~----~ 207 (362)
T PRK14664 155 IFPLGNY---TKQTVREYLREKGYEAK--SKEGESMEVCFIK----GDYRDFLRE------Q---C-PE----LD----T 207 (362)
T ss_pred hccCccC---CHHHHHHHHHHcCCCCC--CCCCCCCcceeec----CcHHHHHHH------h---c-cc----cc----C
Confidence 9999986 79999999999999873 3588999999852 111121110 1 0 00 00 0
Q ss_pred EeeecccEEecCeecChHHHHHHHHHhhhccccceeecccceee---eeecceeEecchHHHHHHHHHHHhhcccCHHHH
Q 011097 315 GIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLV---GMKSRGVYETPGGTILFSAVQELESLTLDRETM 391 (493)
Q Consensus 315 ~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~GiG~~d~ienr~v---G~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~ 391 (493)
..++|++|+.+|+++|.|+++. .||||||.|||+.. -+..+| ..+.+.||.+|... |..-.+.-+
T Consensus 208 ~~~~G~iv~~~G~~~G~H~G~~-~yTiGQRkglgi~~-~~p~yV~~~d~~~n~v~v~~~~~--------l~~~~~~~~-- 275 (362)
T PRK14664 208 EVGPGWFVNSEGVKLGQHKGFP-YYTIGQRKGLEIAL-GKPAYVLKINPQKNTVMLGDAEQ--------LKAEYMLAE-- 275 (362)
T ss_pred cCCCEeEEeCCCCEEEEECCEE-EEecCCccCCCCCC-CCceEEEEEcCCCCEEEEeChhH--------hcCCEEEEe--
Confidence 1256999999999999999997 69999999999742 245665 67888999987753 222222221
Q ss_pred HHHHHHHHHHHHHhhcccCcc--HH--HHHHHHHHHHhcCceeeEEEEEEeCceEEE
Q 011097 392 QVKDSLALKYAELVYAGRWFD--PL--RESIDAFMENITKTTTGSVTLKLYKGSVSV 444 (493)
Q Consensus 392 ~~k~~~~~~~~~lvy~G~w~~--p~--~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~ 444 (493)
+-.|.+ |. ...+..-|++.|+.+.++|+. +..|.+.|
T Consensus 276 ---------------~~~w~~~~~~~~~~~~~~k~R~~~~~~~~~v~~-~~~~~~~v 316 (362)
T PRK14664 276 ---------------QDNIVDEQELFACPDLAVRIRYRSRPIPCRVKR-LEDGRLLV 316 (362)
T ss_pred ---------------ccEecCCCCCCCCceEEEEEccCCCCcCEEEEE-ecCCeEEE
Confidence 123432 11 113345567888888888864 33444544
No 14
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=100.00 E-value=5.4e-35 Score=303.19 Aligned_cols=265 Identities=18% Similarity=0.124 Sum_probs=201.2
Q ss_pred CCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC---cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhh
Q 011097 91 RRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG---IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIF 167 (493)
Q Consensus 91 l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~---~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~ 167 (493)
|+++++||+||+|||+||++++++|+++ |++|+++|++.++. .++++.++++|++||| +|+++|++++|.++++.
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~~-G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgI-p~~vvd~~~~f~~~v~~ 78 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARALAERLGI-GHITYDARKVFRKQIID 78 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHHc-CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCC-CEEEEecHHHHHHHHHh
Confidence 6777899999999999999999999997 99999999998753 2568899999999999 89999999999988877
Q ss_pred hHHHhCccccCcccccc-cCcHHHHHHHHHHHHHHcCCcEeeeCCCCC------------CCChHHHHHHHHhcCCC---
Q 011097 168 PCLRAGAIYERKYLLGT-SMARPVIAKAMVDVAREVGADAVAHGCTGK------------GNDQVRFELTFFALNPE--- 231 (493)
Q Consensus 168 ~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~------------gnD~~r~~~~~~~l~p~--- 231 (493)
+++... ..+..|++| .|+|.+++..|.++|+++|+++|||||+.+ +.|..++|+||++..++
T Consensus 79 ~f~~~y--~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~~l 156 (360)
T PRK14665 79 YFIDEY--MSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQEIL 156 (360)
T ss_pred hhhhHH--hccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHHHH
Confidence 777652 146678888 567778899999999999999999999872 45677788887765553
Q ss_pred CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCce
Q 011097 232 LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEY 311 (493)
Q Consensus 232 i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~ 311 (493)
.++++||.++ +|+|++++|++.|++.. .++|.|++.||.+. ..-++..+ + . +...++..+.
T Consensus 157 ~~~ifPLg~~---~K~eVr~~A~~~gl~~~--a~k~eSq~iCF~~~----~~~~fl~~------~---~-~~~~~~~~~~ 217 (360)
T PRK14665 157 QRMLLPMGGM---TKSEARAYAAERGFEKV--AKKRDSLGVCFCPM----DYRSFLKK------C---L-CDESGDKNRN 217 (360)
T ss_pred hheeccCcCC---CHHHHHHHHHHCCCCcc--CcCCCCCccccCCc----hHHHHHHH------h---c-cccccccccc
Confidence 3789999986 79999999999998432 36889999998531 11111100 0 0 0000000111
Q ss_pred eEEEeeecccEEecCeecChHHHHHHHHHhhhccccceeecccceee---eeecceeEecchHHHHHHHHHHHhhcccCH
Q 011097 312 IEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLV---GMKSRGVYETPGGTILFSAVQELESLTLDR 388 (493)
Q Consensus 312 ~~i~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~GiG~~d~ienr~v---G~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~ 388 (493)
.....++|.+|+.+|+++|.|+++. .||||||+|||+.. -+..+| ..+.+.|+..+ |.+|..-.+.-
T Consensus 218 ~~~~~~~G~iv~~~g~~lG~H~G~~-~yTiGQRkgl~i~~-~~p~yV~~~d~~~n~v~v~~--------~~~l~~~~~~~ 287 (360)
T PRK14665 218 IYRKVERGRFLDESGNFIAWHEGYP-FYTIGQRRGLGIQL-NRAVFVKEIHPETNEVVLAS--------LKALEKTEMWL 287 (360)
T ss_pred ccccCCCccEEcCCCCEeEEECCEE-eeecCCcccCCCCC-CCceEEEEEcCCCCEEEEEC--------hHHhcCCEEEE
Confidence 1112367999999999999999997 69999999999754 245565 66888899876 56666555543
No 15
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=100.00 E-value=3.9e-34 Score=296.07 Aligned_cols=285 Identities=24% Similarity=0.260 Sum_probs=212.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-----------cccHHHHHHHHHHcCCceEEEEcCcHHHHHh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-----------IKELDGLEEKAKASGACQLVVKDLKEEFVKD 164 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-----------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~ 164 (493)
+||+||+|||+||++++++|++. |++|+++|++++.. .++++.++++|+++|| +|+++|++++|..+
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~-G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgI-p~~vvd~~~~f~~~ 78 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ-GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGI-PHYVVDFEKEFWDR 78 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc-CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCC-cEEEEeCHHHHHHH
Confidence 48999999999999999999986 99999999998642 2578899999999999 89999999999988
Q ss_pred hhhhHHHhCccccCcccccc-cCcHHHHHHHHHHHHHHcCCcEeeeCCCCCC---------CChHHHHHHHHhcCCC---
Q 011097 165 YIFPCLRAGAIYERKYLLGT-SMARPVIAKAMVDVAREVGADAVAHGCTGKG---------NDQVRFELTFFALNPE--- 231 (493)
Q Consensus 165 ~i~~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~g---------nD~~r~~~~~~~l~p~--- 231 (493)
++.+++++. ..|.+|++| .|+|.+++.+|.++|+++|+++||||||++. .|..++++++....+.
T Consensus 79 vi~~~~~~~--~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~~L~rg~d~~kDqsy~l~~l~~~~l 156 (346)
T PRK00143 79 VIDYFLDEY--KAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGRELLRGVDPNKDQSYFLYQLTQEQL 156 (346)
T ss_pred HHHHHHHHH--HcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccceEEEccCCCcChhhhhccCCHHHh
Confidence 888888763 257788999 5777788999999999999999999998751 2333456666544332
Q ss_pred CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCce
Q 011097 232 LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEY 311 (493)
Q Consensus 232 i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~ 311 (493)
.++++||.++ +|+|+++||+++|||+. .+|.|++.||.+. ..|..+.. ++
T Consensus 157 ~~~i~PL~~~---~K~eVr~~A~~~gl~~~---~k~~s~~icf~~~----------------~~~~~fl~--------~~ 206 (346)
T PRK00143 157 AKLLFPLGEL---TKPEVREIAEEAGLPVA---KKKDSQGICFIGE----------------RDYRDFLK--------RY 206 (346)
T ss_pred cceeccCccC---CHHHHHHHHHHcCCCcC---CCCCCCcccCCCc----------------hhHHHHHH--------Hh
Confidence 4799999986 79999999999999984 4788998888531 11222221 00
Q ss_pred eEEEeeecccEEecCeecChHHHHHHHHHhhhccccceeecccceee---eeecceeEecchHHHHHHHHHHHhhcccCH
Q 011097 312 IEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLV---GMKSRGVYETPGGTILFSAVQELESLTLDR 388 (493)
Q Consensus 312 ~~i~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~GiG~~d~ienr~v---G~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~ 388 (493)
+ ...+|..++++|+++|.|+++. .||||||.|||+...=+..+| ..+.+.||.+|+. +|..-.+.-
T Consensus 207 ~--~~~pG~~~~~~g~~~g~H~G~~-~yTiGQr~gl~~~~~~~p~yV~~~d~~~n~v~v~~~~--------~l~~~~~~~ 275 (346)
T PRK00143 207 L--PAQPGEIVDLDGKVLGEHKGLM-YYTIGQRKGLGIGGDGEPWYVVGKDPETNTVVVGQGE--------ALYSRELIA 275 (346)
T ss_pred c--ccCCCCEEccCCCEEEEECCEE-eEecCCcCCCCCCCCCcceEEEEEcCCCCEEEEEChh--------HhcccEEEE
Confidence 0 1146999999999999999997 699999999997633355665 6689999999983 333333322
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcc--HH--HHHHHHHHHHhcCceeeEEEEEEeCceEEE
Q 011097 389 ETMQVKDSLALKYAELVYAGRWFD--PL--RESIDAFMENITKTTTGSVTLKLYKGSVSV 444 (493)
Q Consensus 389 ~~~~~k~~~~~~~~~lvy~G~w~~--p~--~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~ 444 (493)
..+ .|.+ |. ...+..-|++.|+.+.++|+ +..+.+.|
T Consensus 276 ~~~-----------------~w~~~~~~~~~~~~~~~~R~~~~~~~~~~~--~~~~~~~v 316 (346)
T PRK00143 276 SDL-----------------NWVGGEPPEEPFECTAKIRYRQKPVPATVE--LEDDRVEV 316 (346)
T ss_pred Eee-----------------eecCCCCCCCCEEEEEEEccCCCCcCEEEE--EcCCEEEE
Confidence 222 2322 11 11344667788888888887 44555544
No 16
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=100.00 E-value=5.8e-34 Score=295.14 Aligned_cols=287 Identities=23% Similarity=0.282 Sum_probs=214.3
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC---------CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhh
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ---------GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIF 167 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq---------~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~ 167 (493)
||+||+|||+||++++++|++. |++|+++|++.+. ..+|++.++++|+++|+ +|+++|++++|.++++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~-g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI-~~~vvd~~~~f~~~v~~ 78 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ-GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGI-PHYVVNFEKEYWEKVFE 78 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCC-cEEEEECcHHHHHHHHH
Confidence 5999999999999999999997 9999999998763 13688999999999999 89999999999988888
Q ss_pred hHHHhCccccCcccccc-cCcHHHHHHHHHHHHHHcCCcEeeeCCCCC-------------CCChHHHHHHHHhcCCC--
Q 011097 168 PCLRAGAIYERKYLLGT-SMARPVIAKAMVDVAREVGADAVAHGCTGK-------------GNDQVRFELTFFALNPE-- 231 (493)
Q Consensus 168 ~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~-------------gnD~~r~~~~~~~l~p~-- 231 (493)
+++++. ..+.+|++| .|+|.+++..|.++|++.|+++|||||+.+ +.|..++++|++...++
T Consensus 79 ~~i~~~--~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~ 156 (349)
T cd01998 79 PFLEEY--KKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQ 156 (349)
T ss_pred HHHHHH--HcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHH
Confidence 888763 257788999 577778999999999999999999999864 11222334444433333
Q ss_pred -CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCc
Q 011097 232 -LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPE 310 (493)
Q Consensus 232 -i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~ 310 (493)
.++++||.++ +|+|+++||+++|||+. .+|.|++.||++ ++ .|..+.. +
T Consensus 157 l~~ii~PL~~~---~K~eVr~~A~~~gl~~~---~k~~s~~iCFi~---~~-------------~~~~fl~--------~ 206 (349)
T cd01998 157 LSRLIFPLGDL---TKPEVREIAKELGLPVA---KKKDSQGICFIG---ER-------------NFRDFLK--------E 206 (349)
T ss_pred HhheeecCCCC---CHHHHHHHHHHcCCCCC---CCCCCCceEEec---CC-------------CHHHHHH--------H
Confidence 5899999986 79999999999999964 689999998864 11 1111111 0
Q ss_pred eeEEEeeecccEEecCeecChHHHHHHHHHhhhccccceeecccceee---eeecceeEecchHHHHHHHHHHHhhcccC
Q 011097 311 YIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLV---GMKSRGVYETPGGTILFSAVQELESLTLD 387 (493)
Q Consensus 311 ~~~i~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~GiG~~d~ienr~v---G~K~r~vyEaPg~~iL~~Ah~~Le~~~l~ 387 (493)
++ ..++|.+|+.+|+++|.|+++. .||||||.|+|+. .-+..+| ..+.+.||.+||. -|.+|..-.+.
T Consensus 207 ~~--~~~~G~i~~~~g~~~g~H~G~~-~yTiGQr~gl~~~-~~~p~yV~~~d~~~n~v~v~~~~-----~~~~l~~~~~~ 277 (349)
T cd01998 207 YL--PEKPGEIVDIDGKVLGEHKGLW-FYTIGQRKGLGIA-SGEPWYVVEKDPETNIVVVGPGS-----DHEALYSDGLI 277 (349)
T ss_pred hc--CCCCCCEECCCCCEeeEECCEe-eEecCCcccCCCC-CCCcEEEEEEcCCCCEEEEECCC-----CChhHhcCEEE
Confidence 00 0146999999999999999997 6999999999976 2356666 6888999999987 35666655554
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcc--HH--HHHHHHHHHHhcCceeeEEEEEEeCceEEE
Q 011097 388 RETMQVKDSLALKYAELVYAGRWFD--PL--RESIDAFMENITKTTTGSVTLKLYKGSVSV 444 (493)
Q Consensus 388 ~~~~~~k~~~~~~~~~lvy~G~w~~--p~--~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~ 444 (493)
-..++ |.. |. ...+..-|++.|+.+.++|+... .|.+.|
T Consensus 278 ~~~~~-----------------w~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~-~~~~~v 320 (349)
T cd01998 278 AKDFN-----------------WIGDPPPLEPLECEVKIRYRQPPVPCTIEPLD-DGRLEV 320 (349)
T ss_pred EEccE-----------------ECCCCCCCCCEEEEEEEccCCCCcCEEEEEeC-CCeEEE
Confidence 43332 322 11 11344566778888888776533 444443
No 17
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=100.00 E-value=8.6e-34 Score=293.92 Aligned_cols=278 Identities=19% Similarity=0.258 Sum_probs=208.3
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecC---------C--CcccHHHHHHHHHHcCCceEEEEcCcHHHHHh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVG---------Q--GIKELDGLEEKAKASGACQLVVKDLKEEFVKD 164 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~G---------q--~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~ 164 (493)
+||+||+|||+||++++++|+++ |++|+++|++.. + ..++++.++++|+.+|| |++++|++++|.++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgI-p~~vid~~~~f~~~ 78 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ-GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGI-PLEKVNFQKEYWNK 78 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc-CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCC-CEEEEECHHHHHHH
Confidence 48999999999999999999997 999999999532 1 12578999999999999 89999999999999
Q ss_pred hhhhHHHhCccccCccccccc-CcHHHHHHHHHHHHHHc-CCcEeeeCCCCC------------CCChHHHHHHHHhcCC
Q 011097 165 YIFPCLRAGAIYERKYLLGTS-MARPVIAKAMVDVAREV-GADAVAHGCTGK------------GNDQVRFELTFFALNP 230 (493)
Q Consensus 165 ~i~~~i~~~a~y~g~y~~~~~-~~R~l~~~~l~~~A~e~-Gad~IAtGhn~~------------gnD~~r~~~~~~~l~p 230 (493)
++.+++... ..|++|++|. |+|.++++.|.++|++. |+++||||||.+ +.|..++++++++..+
T Consensus 79 v~~~~~~~y--~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~~l~ 156 (352)
T TIGR00420 79 VFEPFIQEY--KEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLS 156 (352)
T ss_pred HHHHHHHHH--HcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCcCcceecccCC
Confidence 888888762 2678899994 66667799999999996 999999999873 2233344555554333
Q ss_pred C---CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCC
Q 011097 231 E---LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPN 307 (493)
Q Consensus 231 ~---i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~ 307 (493)
+ .++++||.++ +|+|+++||+++|+|+. .+|.|++.||.+ .+...+++ ... .|
T Consensus 157 ~~~l~~~i~PL~~~---~K~EVr~~A~~~gl~~~---~k~~Sq~iCFi~---~~~~~~fl----------~~~----~~- 212 (352)
T TIGR00420 157 HEQLAKLLFPLGEL---LKPEVRQIAKNAGLPTA---EKKDSQGICFIG---ERKFRDFL----------KKY----LP- 212 (352)
T ss_pred HHHhhhhcccCCCC---CHHHHHHHHHHcCCCCC---CCCCCCCeEEec---CCCHHHHH----------HHh----CC-
Confidence 3 5799999986 79999999999999975 489999988753 11111111 100 01
Q ss_pred CCceeEEEeeecccEEecCe-ecChHHHHHHHHHhhhccccceeecccceee---eeecceeEecchHHHHHHHHHHHhh
Q 011097 308 QPEYIEIGIVSGIPVSVNGK-KLSPASLLAELNEIGGRHGIGRIDMVENRLV---GMKSRGVYETPGGTILFSAVQELES 383 (493)
Q Consensus 308 ~~~~~~i~F~~G~pV~inG~-~l~~~~~i~~ln~ig~r~GiG~~d~ienr~v---G~K~r~vyEaPg~~iL~~Ah~~Le~ 383 (493)
..+|.+|+++|+ ++|.|+++. .||||||.|||+...-+..+| ..+.+.||..|| |.+|..
T Consensus 213 --------~~~g~iv~~~g~~~~g~H~G~~-~yTiGQr~gl~i~~~~~p~yV~~~d~~~n~v~v~~~-------~~~l~~ 276 (352)
T TIGR00420 213 --------VKPGVIITVDGQSVIGEHDGLW-FYTIGQRKGLGIGGAAEPWFVVEKDLETNELIVSHG-------KPDLAS 276 (352)
T ss_pred --------CCCCcEEeCCCCEeeEEECCEE-eEecCCcCCCCCCCCCCceEEEEEcCCCCEEEEeCC-------cHHHcc
Confidence 145999999998 999999997 699999999997633456666 678999999998 666665
Q ss_pred cccCHHHHHHHHHHHHHHHHHhhcccCcc--HH--HHHHHHHHHHhcCceeeEEE
Q 011097 384 LTLDRETMQVKDSLALKYAELVYAGRWFD--PL--RESIDAFMENITKTTTGSVT 434 (493)
Q Consensus 384 ~~l~~~~~~~k~~~~~~~~~lvy~G~w~~--p~--~~~l~~~i~~~q~~v~G~V~ 434 (493)
-.+.-...+ |.+ |. ...+..-|++.++.+.++|+
T Consensus 277 ~~~~~~~~~-----------------w~~~~~~~~~~~~~~k~R~~~~~~~~~~~ 314 (352)
T TIGR00420 277 RGLLAQQFH-----------------WLDDEPNPFEMRCTVKIRYRQVPVQCKLK 314 (352)
T ss_pred CEEEEEeeE-----------------ECCCCCCCCCeEEEEEEccCCCCcCEEEE
Confidence 555443332 322 21 11344556677777777765
No 18
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.4e-29 Score=245.46 Aligned_cols=255 Identities=20% Similarity=0.225 Sum_probs=196.6
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEe-------cC-CC--cccHHHHHHHHHHcCCceEEEEcCcHHHH
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTAD-------VG-QG--IKELDGLEEKAKASGACQLVVKDLKEEFV 162 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid-------~G-q~--~ed~e~a~~~A~~LGI~~~~VvDl~eef~ 162 (493)
++.++|+||||||+||+|++++|+.+ ||+|.||++. .| +. ++|+++|+++|++|+| +++.|++.+||+
T Consensus 3 ~~~~~VvvamSgGVDSsVaa~Ll~~~-g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI-~~~~Vnf~kEYW 80 (377)
T KOG2805|consen 3 EKPDRVVVAMSGGVDSSVAARLLAAR-GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNI-PLHQVNFVKEYW 80 (377)
T ss_pred cccceEEEEecCCchHHHHHHHHHhc-CCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCC-eeEEEeeHHHHH
Confidence 45689999999999999999999998 9999999993 23 21 4799999999999999 899999999999
Q ss_pred HhhhhhHHHhCccccCcccccc-cCcHHHHHHHHHHHHHH-cCCcEeeeCCCCC---------------CCChHHHHHHH
Q 011097 163 KDYIFPCLRAGAIYERKYLLGT-SMARPVIAKAMVDVARE-VGADAVAHGCTGK---------------GNDQVRFELTF 225 (493)
Q Consensus 163 ~~~i~~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e-~Gad~IAtGhn~~---------------gnD~~r~~~~~ 225 (493)
.++..|++.... +|++|++- .|||.++|..+.+.|.+ +|+|+|||||.++ ..|..++|++|
T Consensus 81 ~~Vfs~~L~~Y~--~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~F 158 (377)
T KOG2805|consen 81 NDVFSPFLEEYE--NGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMVKDQTYF 158 (377)
T ss_pred HHHHHHHHHHHh--cCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecccccCCceeE
Confidence 999999998722 68999998 79999999988888865 7999999999762 12334455555
Q ss_pred HhcCCC---CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCC
Q 011097 226 FALNPE---LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDP 302 (493)
Q Consensus 226 ~~l~p~---i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~ 302 (493)
+....+ -+.++||+.+ +|+|+.+.|.+.|+|. +++|.|+.+||+| .. + -|..++
T Consensus 159 L~~in~~~L~r~lfPlg~~---~K~eVk~lA~~~gf~~---aeK~eSqGICFvg-----k~-----~-----~F~dFl-- 215 (377)
T KOG2805|consen 159 LSTINQTQLKRLLFPLGCL---TKSEVKKLAKQAGFPN---AEKPESQGICFVG-----KI-----K-----HFSDFL-- 215 (377)
T ss_pred eecccHHHHHhhhccCccc---CHHHHHHHHHhcCCcc---ccCcccceeEEec-----cc-----h-----hHHHHH--
Confidence 432111 3678999986 6999999999999995 4799999777765 11 1 022222
Q ss_pred CCCCCCCceeEEEeeecccEEec-CeecChHHHHHHHHHhhhcccccee--ecccceee---eeecceeEecchHHHHHH
Q 011097 303 EDAPNQPEYIEIGIVSGIPVSVN-GKKLSPASLLAELNEIGGRHGIGRI--DMVENRLV---GMKSRGVYETPGGTILFS 376 (493)
Q Consensus 303 ~~~p~~~~~~~i~F~~G~pV~in-G~~l~~~~~i~~ln~ig~r~GiG~~--d~ienr~v---G~K~r~vyEaPg~~iL~~ 376 (493)
.+| |++.+|++..++ |..++.|.++. -+|||||-|+-.. ......+| ..|+..||.+-|-
T Consensus 216 ------~~y--i~~~~g~Il~i~~gs~vg~h~G~h-~~TIGqR~g~sqa~~~~~g~wfV~~k~~~~n~i~i~rg~----- 281 (377)
T KOG2805|consen 216 ------QRY--IGSSPGPILEIDSGSVVGNHRGIH-SYTIGQRCGISQALSLYGGPWFVSEKDTKNNVIYICRGY----- 281 (377)
T ss_pred ------HHh--cCCCCCCeEEecCCcccccccceE-EEEechhcCchhhhhccCCceEEEEeecCCCeEEEEcCC-----
Confidence 123 346789998885 67789999998 6999999997622 22344555 6788899999887
Q ss_pred HHHHHhhcccCH
Q 011097 377 AVQELESLTLDR 388 (493)
Q Consensus 377 Ah~~Le~~~l~~ 388 (493)
-|.+|.+-++--
T Consensus 282 ~~p~l~s~~~~i 293 (377)
T KOG2805|consen 282 NNPDLYSRIFRI 293 (377)
T ss_pred CCHHHhhceEEe
Confidence 677777666533
No 19
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.92 E-value=4e-24 Score=213.00 Aligned_cols=177 Identities=19% Similarity=0.206 Sum_probs=135.7
Q ss_pred HHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHc-----cCCeEEEEEEecCCCcccHHHHHHHHHH
Q 011097 72 QALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLREN-----YGCEVVCFTADVGQGIKELDGLEEKAKA 146 (493)
Q Consensus 72 ~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~-----~G~eViavtid~Gq~~ed~e~a~~~A~~ 146 (493)
+.+++||.+ +|++|+|+.+++||+||+|||+||++++++|.+. .+++|+++|+|+|+.+.+.+.++++|++
T Consensus 10 ~~~~~~v~~----~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~ 85 (258)
T PRK10696 10 KRLRRQVGQ----AIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLES 85 (258)
T ss_pred HHHHHHHHH----HHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 678999766 9999999999999999999999999999999652 2579999999999965555678999999
Q ss_pred cCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHH-
Q 011097 147 SGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTF- 225 (493)
Q Consensus 147 LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~- 225 (493)
+|| ++++++.. .+. +....+. ++. ..|..||++++..+.++|++.|+++||+|||.+ |+.. +.+
T Consensus 86 lgI-~~~v~~~~-~~~--~~~~~~~-----~~~--~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d--D~~E--t~l~ 150 (258)
T PRK10696 86 LGV-PYHIEEQD-TYS--IVKEKIP-----EGK--TTCSLCSRLRRGILYRTARELGATKIALGHHRD--DILE--TLFL 150 (258)
T ss_pred hCC-CEEEEEec-chh--hhhhhhc-----cCC--ChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH--HHHH--HHHH
Confidence 999 89998853 221 1111111 111 245568999999999999999999999999875 7763 222
Q ss_pred --------HhcCC-------CCeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 226 --------FALNP-------ELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 226 --------~~l~p-------~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
.++.| .+.+++||..+ +|+|+++||+.+|+|+..+..||+..
T Consensus 151 nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~~---~k~eI~~y~~~~~lp~~~~~~~~~~~ 207 (258)
T PRK10696 151 NMFYGGKLKAMPPKLLSDDGKHIVIRPLAYV---AEKDIIKFAEAKEFPIIPCNLCGSQE 207 (258)
T ss_pred HHHhCCcccccCCeeecCCCceeEEecCccC---CHHHHHHHHHHcCCCEeeCCCCCCCc
Confidence 12222 25799999985 79999999999999985321256544
No 20
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=9.6e-23 Score=205.62 Aligned_cols=177 Identities=21% Similarity=0.214 Sum_probs=140.7
Q ss_pred HHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCCc---ccHHHHHHHH
Q 011097 69 KAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQGI---KELDGLEEKA 144 (493)
Q Consensus 69 ~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~~---ed~e~a~~~A 144 (493)
||.+.+++++.+ .+++++|+ +++|+||+|||+||++++++|++..+ +++.++|||+|+.. .+.+.++++|
T Consensus 1 ~~~~~~~~~v~~----~i~~~~~~--~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~ 74 (298)
T COG0037 1 CLREKLERKVKR----AIREFNLI--EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLC 74 (298)
T ss_pred ChHHHHHHHHHH----HHHhcccc--CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHH
Confidence 678889999876 89999999 68999999999999999999998633 79999999999853 5678899999
Q ss_pred HHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHH
Q 011097 145 KASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELT 224 (493)
Q Consensus 145 ~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~ 224 (493)
+.+|+ ++++.++.+.+...... + ...|..||.+++.++.+.|++.|+++||||||++ |+.....+
T Consensus 75 ~~~~~-~~~v~~~~~~~~~~~~~----------~--~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d--D~~et~lm 139 (298)
T COG0037 75 EKLGI-PLIVERVTDDLGRETLD----------G--KSICAACRRLRRGLLYKIAKELGADKIATGHHLD--DQAETFLM 139 (298)
T ss_pred HHhCC-ceEEEEEEeeccccccC----------C--CChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcH--HHHHHHHH
Confidence 99999 89999987655432110 1 1345678999999999999999999999999876 88742111
Q ss_pred ----------HHhcCC-----CC-eEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 225 ----------FFALNP-----EL-NVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 225 ----------~~~l~p-----~i-~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
+.++.+ .. .+++||..+ +++|+..||..+|||+.. .+|||..
T Consensus 140 ~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~~---~~~ei~~~~~~~~l~~~~-d~~n~~~ 197 (298)
T COG0037 140 NLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLYV---REKEIELYAKEKGLPYIE-DESNYDL 197 (298)
T ss_pred HHHcCcHhhHHhhCCcccccCCCCeeeeecccC---CHHHHHHHHHHcCCCEee-cCCCCCc
Confidence 112222 23 599999975 799999999999999865 4677443
No 21
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.86 E-value=1.3e-20 Score=176.60 Aligned_cols=159 Identities=23% Similarity=0.315 Sum_probs=120.5
Q ss_pred EEEEEEcCChHHHHHHHHHHHcc-----CCeEEEEEEecCCC---cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENY-----GCEVVCFTADVGQG---IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~-----G~eViavtid~Gq~---~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
||+|++|||+||++++++|++.. +++|+++|+|.|+. .++.+.++++|+++|+ +++++++.+.|. ....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~--~~~~ 77 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGI-ELEIVSFKEEYT--DDIE 77 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCC-ceEEEehhhhcc--hhhh
Confidence 69999999999999999998742 46999999999975 3678899999999999 899999986651 1111
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHH--HH-----Hhc---C------CCC
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFEL--TF-----FAL---N------PEL 232 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~--~~-----~~l---~------p~i 232 (493)
. .. ..-...|..|+.+++..+.++|++.|+++|++||+.+ |+...-. .+ ..+ . ..+
T Consensus 78 ~-~~-----~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~d--D~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~ 149 (185)
T cd01993 78 V-KK-----RGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLD--DEAETLLMNLLRGGILRLMRPGPILYLDEGDV 149 (185)
T ss_pred h-hc-----cCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChH--HHHHHHHHHHHhcCHHHHcCCCCccccCCCCc
Confidence 1 11 1112345567888999999999999999999999875 6653111 01 111 1 136
Q ss_pred eEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 233 NVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 233 ~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
.+++||.++ +|.|+++||+.+|||+.. ..|||+.
T Consensus 150 ~iirPL~~~---~k~eI~~~~~~~~l~~~~-d~~~~~~ 183 (185)
T cd01993 150 TRIRPLVYV---REKEIVLYAELNGLPFVE-EECPYAG 183 (185)
T ss_pred eEEeecccC---CHHHHHHHHHHcCCCccc-CCCCCCC
Confidence 899999986 799999999999999875 5799864
No 22
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.86 E-value=2.6e-21 Score=185.28 Aligned_cols=147 Identities=25% Similarity=0.333 Sum_probs=115.1
Q ss_pred EEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccc
Q 011097 98 VVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIY 176 (493)
Q Consensus 98 VvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y 176 (493)
|+||+|||+||++++++|++..+.+|+++|+|.|+. .++++.++++|+++|+ +++++++.+.. .+.+..+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi-~~~~~~~~~~~-----~~~~~~~--- 71 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGI-RHEVIETDELD-----DPEFAKN--- 71 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCC-cEEEEeCCccc-----cHHHhcC---
Confidence 689999999999999999887445999999999983 4689999999999999 89999986321 1222221
Q ss_pred cCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHHHC
Q 011097 177 ERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKH 256 (493)
Q Consensus 177 ~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~~ 256 (493)
.+..|..||.+++..+.++|++.|+++|+||||.+ |+......+.... ...+++||.+..+ +|+|+++||+++
T Consensus 72 ---~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d--D~~e~~~~~~~~~-~~~iirPL~~~~~-~K~ei~~~a~~~ 144 (202)
T cd01990 72 ---PPDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD--DLGDYRPGLKALR-ELGVRSPLAEAGL-GKAEIRELAREL 144 (202)
T ss_pred ---CCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc--cCcccChHHHHHH-HcCCcCchhhcCC-CHHHHHHHHHHc
Confidence 12445678999999999999999999999999875 6554322222222 3679999995334 799999999999
Q ss_pred CCCC
Q 011097 257 NVPV 260 (493)
Q Consensus 257 GIp~ 260 (493)
|+|+
T Consensus 145 gl~~ 148 (202)
T cd01990 145 GLPT 148 (202)
T ss_pred CCCC
Confidence 9998
No 23
>PRK08349 hypothetical protein; Validated
Probab=99.85 E-value=1.1e-20 Score=181.29 Aligned_cols=158 Identities=20% Similarity=0.170 Sum_probs=114.2
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHc----CCceE---EEEcCcHHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKAS----GACQL---VVKDLKEEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~L----GI~~~---~VvDl~eef~~~~i~~ 168 (493)
+|+|+++|||+||+|++++|++. |++|+++|+|+|. .+.+.++++|+++ |+ +| +++|+.+.... .+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~~-g~~v~av~~d~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~~~~-~~~~ 75 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLRR-GVEVYPVHFRQDE--KKEEKVRELVERLQELHGG-KLKDPVVVDAFEEQGP-VFEK 75 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHHc-CCeEEEEEEeCCH--HHHHHHHHHHHHHHHhcCC-CcceEEEEcchHHhHH-HHHH
Confidence 47999999999999999999886 9999999999964 4566677777666 57 55 66787654332 1222
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHh----cCCCCeEEeccccCCCC
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFA----LNPELNVVAPWREWDIQ 244 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~----l~p~i~ii~PLr~~~l~ 244 (493)
+ ... +..+.+|.+||.+++..+.++|+++|+++|+||||.. |.. .+...+. ....+++++||..+
T Consensus 76 ~-~~~----~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~--d~a-~~~l~nl~~~~~~~~i~i~rPL~~~--- 144 (198)
T PRK08349 76 L-REL----KKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLG--QVA-SQTLDNLMVISTATDLPVLRPLIGL--- 144 (198)
T ss_pred H-Hhh----CCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCc--hHH-HHHHHHHhccccccCCeEEcCCCCC---
Confidence 2 221 1234567778899999999999999999999999864 443 2322221 12347899999975
Q ss_pred CHHHHHHHHHHCCCCCC---CCCCCCCc
Q 011097 245 GREDAIEYAKKHNVPVP---VTKKSIYS 269 (493)
Q Consensus 245 sKeEi~~yA~~~GIp~~---~t~~cpyS 269 (493)
+|+|+++||+++|++.. ....|||.
T Consensus 145 ~K~eI~~~a~~~g~~~~~~~~~~~C~~~ 172 (198)
T PRK08349 145 DKEEIVKIAKEIGTFEISIEPEPPCPFV 172 (198)
T ss_pred CHHHHHHHHHHcCChhhhhCCCCCCcCC
Confidence 79999999999996432 13467765
No 24
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.85 E-value=6.6e-21 Score=189.40 Aligned_cols=161 Identities=25% Similarity=0.401 Sum_probs=122.3
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHH
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLR 171 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~ 171 (493)
.+.++|+||+|||+||+++++++++. |.+|+++|+|.++ +.++++.++++|+.+|+ +|+++++. ++.+ + +.
T Consensus 10 ~~~~~vlVa~SGGvDSs~ll~la~~~-g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi-~~~ii~~~-~~~~----~-~~ 81 (252)
T TIGR00268 10 KEFKKVLIAYSGGVDSSLLAAVCSDA-GTEVLAITVVSPSISPRELEDAIIIAKEIGV-NHEFVKID-KMIN----P-FR 81 (252)
T ss_pred HhcCCEEEEecCcHHHHHHHHHHHHh-CCCEEEEEecCCCCCHHHHHHHHHHHHHcCC-CEEEEEcH-HHHH----H-HH
Confidence 34578999999999999999999987 9999999999975 34688999999999999 89999985 3322 2 22
Q ss_pred hCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHH
Q 011097 172 AGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIE 251 (493)
Q Consensus 172 ~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~ 251 (493)
.|. +..|..|+..++..+.++|++.|+++|+||||.+ |+......+.++. ...+++||.+..+ +|+|+++
T Consensus 82 ~n~------~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~d--D~~~~rpg~~a~~-~~~~~~PL~~~~l-~K~eIr~ 151 (252)
T TIGR00268 82 ANV------EERCYFCKKMVLSILVKEAEKRGYDVVVDGTNAD--DLFDHRPGYRAVK-EFNGVSPWAEFGI-TKKEIRE 151 (252)
T ss_pred hCC------CcccchhhHHHHHHHHHHHHHcCCCEEEECCCCc--ccccccHHHHHHH-HcCCCCcchhcCC-CHHHHHH
Confidence 222 2334456777899999999999999999999875 5543333333332 3445699988656 7999999
Q ss_pred HHHHCCCCCCCCCCCCCcccCcccc
Q 011097 252 YAKKHNVPVPVTKKSIYSRDRNLWH 276 (493)
Q Consensus 252 yA~~~GIp~~~t~~cpyS~d~nl~g 276 (493)
||+++|+|+.. .| .+.|+|.
T Consensus 152 la~~~gl~~~~---~p--s~~Cl~s 171 (252)
T TIGR00268 152 IAKSLGISFPD---KP--SEACLAS 171 (252)
T ss_pred HHHHcCCCccC---CC--CCCceEe
Confidence 99999999742 33 2357764
No 25
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.85 E-value=7.6e-21 Score=179.65 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=105.1
Q ss_pred EEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecCCCc---ccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHH
Q 011097 97 KVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVGQGI---KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCL 170 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~Gq~~---ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i 170 (493)
||+||+|||+||++|+++|.+. .+.++.++|+|+|... ++.+.++++|+.+|+ ++++.++.. . .
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i-~~~~~~~~~--~-~------ 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGI-PLYIVRIDE--D-R------ 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT--EEEEEE--C--H-C------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCC-ceEEEEeee--e-e------
Confidence 7999999999999999999764 3679999999999853 467889999999999 899998854 0 0
Q ss_pred HhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHH--HHHh-----c---CC-----CCeEE
Q 011097 171 RAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFEL--TFFA-----L---NP-----ELNVV 235 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~--~~~~-----l---~p-----~i~ii 235 (493)
. .+ ...+.+||.+|+..|.++|++.|+++||+|||.+ |++..-. .+.+ + .+ .++++
T Consensus 71 ~-----~~--~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d--D~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~i 141 (182)
T PF01171_consen 71 K-----KG--SNIEECARELRYQFLREIAKEEGCNKIALGHHLD--DQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKLI 141 (182)
T ss_dssp C-----TT--STCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH--HHHHHHHHHHHHT--CCCCC-S-SEEEETTCEEE
T ss_pred c-----cc--CCHHHHHHHHHHHHHHHhhhcccccceeecCcCC--ccHHHHHHHHHHhccchhhccccccccccCcccC
Confidence 0 00 0122568999999999999999999999999976 8874211 1111 1 11 38999
Q ss_pred eccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 236 APWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 236 ~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
+||... +|+|+++||..+|||+..+ .|+++.
T Consensus 142 RPLl~~---~k~ei~~~~~~~~i~~~~D-~tN~~~ 172 (182)
T PF01171_consen 142 RPLLYV---SKDEIRAYAKENGIPYVED-PTNYDE 172 (182)
T ss_dssp -GGGCS----HHHHHHHHHHTT-SSBS--CCGGCT
T ss_pred CcchhC---CHHHHHHHHHHCCCcEEEC-cCCCCC
Confidence 999975 7999999999999999753 565554
No 26
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.84 E-value=1.8e-20 Score=191.59 Aligned_cols=184 Identities=23% Similarity=0.308 Sum_probs=131.5
Q ss_pred HHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHH-HHc
Q 011097 70 AIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKA-KAS 147 (493)
Q Consensus 70 f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A-~~L 147 (493)
|++...+++++ .++ .+||+||+|||+||+|+++++++.+|.+++|+|+|.|+. ..|.+.+++.+ +++
T Consensus 2 ~~~~~~~~l~~----~v~-------~~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~l 70 (311)
T TIGR00884 2 FIEEAVEEIRE----QVG-------DAKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRL 70 (311)
T ss_pred hHHHHHHHHHH----HhC-------CCcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 55665566543 332 278999999999999999999886799999999999984 35667777765 589
Q ss_pred CCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcC-CcEeeeCCCCCCCChHHHHH---
Q 011097 148 GACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVG-ADAVAHGCTGKGNDQVRFEL--- 223 (493)
Q Consensus 148 GI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~G-ad~IAtGhn~~gnD~~r~~~--- 223 (493)
|+ +|+++|+++.|.... .. +. +. ...|+. |...++..+.++|+++| +++|++|||.. |+.....
T Consensus 71 gi-~~~vvd~~e~fl~~l-~~-v~-~p-~~~r~~-----~~~~~~~~~~~~A~~~g~~~~la~Gt~~d--D~~Es~~G~~ 138 (311)
T TIGR00884 71 GL-NLVYVDAKERFLSAL-KG-VT-DP-EEKRKI-----IGRVFIEVFEREAKKIGDAEYLAQGTIYP--DVIESAAGTA 138 (311)
T ss_pred CC-cEEEEeCcHHHHhhh-cC-CC-Ch-HHHHHH-----HHHHHHHHHHHHHHHCCCCCEEEECCCCh--hhhhhccChh
Confidence 99 899999998776431 11 10 00 012232 23456788999999999 99999999976 5542210
Q ss_pred -HHHh------cC--CCCeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccC
Q 011097 224 -TFFA------LN--PELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEG 281 (493)
Q Consensus 224 -~~~~------l~--p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg 281 (493)
.+.. +. ...++++||+++ +|+|++++|+++|+|...+..||++. .|| ++++.|
T Consensus 139 ~~iks~~~~~gl~~~~~~~ii~PL~~l---~K~EVr~la~~lgLp~~~~~~~Pf~~-p~L-a~Ri~g 200 (311)
T TIGR00884 139 HVIKSHHNVGGLPEDMKLKLVEPLREL---FKDEVRKLGKELGLPEEIVWRHPFPG-PGL-AVRVLG 200 (311)
T ss_pred HhhhccCccccCChhhcCceEEEcccC---cHHHHHHHHHHcCCCHHHhhCCCCCC-Cce-Eeeeec
Confidence 0111 11 136799999985 79999999999999976667788864 566 566654
No 27
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.83 E-value=7.2e-20 Score=173.21 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=116.4
Q ss_pred EEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecCCC---cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHH
Q 011097 97 KVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVGQG---IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCL 170 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~Gq~---~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i 170 (493)
||+||+|||+||++++++|++. +|++|.++|+|+|+. .++.+.++++|+.+|+ |++++++....... .
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi-~~~~~~~~~~~~~~----~- 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNI-PLEIKKVDVKALAK----G- 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCC-CEEEEEecchhhcc----c-
Confidence 6999999999999999999872 478999999999985 2578999999999999 89999885211100 0
Q ss_pred HhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHH--HH--------HhcCC------CCeE
Q 011097 171 RAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFEL--TF--------FALNP------ELNV 234 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~--~~--------~~l~p------~i~i 234 (493)
.+. ..+..||.+++..+.++|++.|+++|++||+.+ |....-. .+ ..+.| .+.+
T Consensus 75 ------~~~--~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~--D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~i 144 (189)
T TIGR02432 75 ------KKK--NLEEAAREARYDFFEEIAKKHGADYILTAHHAD--DQAETILLRLLRGSGLRGLSGMKPIRILGNGGQI 144 (189)
T ss_pred ------cCC--CHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH--HHHHHHHHHHHcCCCcccccCCccccccCCCCEE
Confidence 000 112347899999999999999999999999875 6553111 11 11212 4679
Q ss_pred EeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 235 VAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 235 i~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
++||+++ +|+|+++||+.+|+|+.. ..|||..
T Consensus 145 irPL~~~---~k~ei~~~~~~~~lp~~~-~~~~~~~ 176 (189)
T TIGR02432 145 IRPLLGI---SKSEIEEYLKENGLPWFE-DETNQDD 176 (189)
T ss_pred ECCCCCC---CHHHHHHHHHHcCCCeee-CCCCCCC
Confidence 9999986 799999999999999864 4566653
No 28
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.83 E-value=1.4e-19 Score=170.14 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=107.8
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcc-----cHHHHHHHHHHcCCceE--EEEcCcHHHHHhhhhhH
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIK-----ELDGLEEKAKASGACQL--VVKDLKEEFVKDYIFPC 169 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~e-----d~e~a~~~A~~LGI~~~--~VvDl~eef~~~~i~~~ 169 (493)
||+||+|||+||++++++|++. |++|+++|+|+|+... +...+.+.+..+|+ ++ .++++.+++.+ +.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~-g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~----~~ 74 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR-GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSP-GHKLVVIIFTFFVQK----EI 74 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc-CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCC-CCceEEEeCcHHHHH----HH
Confidence 5899999999999999999997 9999999999998532 24555555566776 45 45665443221 22
Q ss_pred HHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH---HHHHHHHhcCCCCeEEeccccCCCCCH
Q 011097 170 LRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV---RFELTFFALNPELNVVAPWREWDIQGR 246 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~---r~~~~~~~l~p~i~ii~PLr~~~l~sK 246 (493)
... +..+.+|..||.+++..+.++|++.|+++|+||||.. |.. +.+.........+++++||.++ +|
T Consensus 75 ~~~-----~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~--D~~~~~~~~l~~~~~~~~~~i~rPl~~~---~K 144 (177)
T cd01712 75 YGY-----GKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLG--QVASQTLENLLVISSGTDLPILRPLIGF---DK 144 (177)
T ss_pred HHh-----CCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcc--cchHHHHHhhhhcccCCCCeEECCCCCC---CH
Confidence 211 2234566667888999999999999999999999864 332 1111111123458999999975 79
Q ss_pred HHHHHHHHHCCCCC
Q 011097 247 EDAIEYAKKHNVPV 260 (493)
Q Consensus 247 eEi~~yA~~~GIp~ 260 (493)
+|+++||+++|+|.
T Consensus 145 ~eI~~~a~~~gl~~ 158 (177)
T cd01712 145 EEIIGIARRIGTYD 158 (177)
T ss_pred HHHHHHHHHcCCcc
Confidence 99999999999985
No 29
>PRK00919 GMP synthase subunit B; Validated
Probab=99.82 E-value=1.4e-19 Score=184.39 Aligned_cols=150 Identities=23% Similarity=0.330 Sum_probs=114.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
+||+||+|||+||+++++++++.+|++|+|+|+|.|+. ..|.+.++++|+++ + +|+++|+++.|.+.. .. + .+.
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i-~~~vvd~~e~fl~~L-~~-v-~np 96 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-L-NLRIVDAKDRFLDAL-KG-V-TDP 96 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-C-CcEEEECCHHHHHhc-cC-C-CCh
Confidence 79999999999999999999886699999999999994 46899999999998 8 899999988775431 11 1 111
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHH------hcC--CCCeEEeccccCCCCCH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFF------ALN--PELNVVAPWREWDIQGR 246 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~------~l~--p~i~ii~PLr~~~l~sK 246 (493)
. ..|+ .|+..++..+.++|+++|+++|++|||.. |.......+. .+. ..+.+++||+++ +|
T Consensus 97 e-~rr~-----~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~d--D~iE~r~~iks~~nv~gl~~~~~~~Ii~PL~~l---~K 165 (307)
T PRK00919 97 E-EKRK-----IIGETFIRVFEEVAKEIGAEYLVQGTIAP--DWIESEGGIKSHHNVGGLPEGMVLKIVEPLRDL---YK 165 (307)
T ss_pred H-Hhhh-----HHHHHHHHHHHHHHHHcCCCEEEECCCCc--chhhccCcccccccccccChhhcCCcccCchhC---cH
Confidence 0 1223 23456788999999999999999999875 5432211111 111 136799999985 79
Q ss_pred HHHHHHHHHCCCCCC
Q 011097 247 EDAIEYAKKHNVPVP 261 (493)
Q Consensus 247 eEi~~yA~~~GIp~~ 261 (493)
+|++++|+++|+|..
T Consensus 166 ~EVr~la~~lGLp~~ 180 (307)
T PRK00919 166 DEVREVARALGLPEE 180 (307)
T ss_pred HHHHHHHHHcCCChh
Confidence 999999999999975
No 30
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.82 E-value=2.4e-19 Score=176.00 Aligned_cols=167 Identities=21% Similarity=0.234 Sum_probs=121.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC-
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG- 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~- 173 (493)
+||+|+||||+||+++++|+++. +.+|+++|+|+||. ..|++.++++|+.+|+++|+++|+.. +. .+-...+...
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~-~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~-l~-~l~~s~Lt~~~ 78 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ-YDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTL-LN-ELAVSSLTRDS 78 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc-CCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccc-cc-ccccccccccc
Confidence 58999999999999999999886 77999999999995 46899999999999994399999862 21 1101011000
Q ss_pred ---ccc---cCcccccccCcHHHHHHHHHH-HHHHcCCcEeeeCCCCC---CCChHH------HHHHHH-hcCCCCeEEe
Q 011097 174 ---AIY---ERKYLLGTSMARPVIAKAMVD-VAREVGADAVAHGCTGK---GNDQVR------FELTFF-ALNPELNVVA 236 (493)
Q Consensus 174 ---a~y---~g~y~~~~~~~R~l~~~~l~~-~A~e~Gad~IAtGhn~~---gnD~~r------~~~~~~-~l~p~i~ii~ 236 (493)
..+ ++..+..|.+||+.++-.+.. +|.+.|++.|++|.|.. ++.++| ++..+. ++...+++.+
T Consensus 79 ~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~~~~~i~I~a 158 (231)
T PRK11106 79 IPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFET 158 (231)
T ss_pred ccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhccCCCcEEEe
Confidence 000 112334445789999866655 89999999999998853 222232 222222 1333599999
Q ss_pred ccccCCCCCHHHHHHHHHHCC-CCC--CCCCCCCCc
Q 011097 237 PWREWDIQGREDAIEYAKKHN-VPV--PVTKKSIYS 269 (493)
Q Consensus 237 PLr~~~l~sKeEi~~yA~~~G-Ip~--~~t~~cpyS 269 (493)
||.++ +|.||++++.+.| +|+ ..|.+| |.
T Consensus 159 Pl~~l---sK~eI~~l~~~lg~v~~~~~~T~SC-y~ 190 (231)
T PRK11106 159 PLMWL---NKAETWALADYYGQLDLVRHETLTC-YN 190 (231)
T ss_pred cCCCC---CHHHHHHHHHHcCCcccccCceeec-cC
Confidence 99986 7999999999999 987 777777 65
No 31
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.82 E-value=1.6e-19 Score=169.76 Aligned_cols=150 Identities=21% Similarity=0.200 Sum_probs=113.0
Q ss_pred EEEEEEcCChHHHHHHHHHHHcc---CCeEEEEEEecCCCc---ccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHH
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENY---GCEVVCFTADVGQGI---KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCL 170 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~---G~eViavtid~Gq~~---ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i 170 (493)
||+||+|||+||+++++++++.. +.+|.++++|.|+.. ++.+.++++|+.+|+ +++++.. .+. . .
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~--~~~-~----~- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGI-PLYILVV--ALA-P----K- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCC-cEEEEee--ccc-c----C-
Confidence 69999999999999999997751 358999999999753 579999999999999 7888721 000 0 0
Q ss_pred HhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHH--HH-----hc--------CCCCeEE
Q 011097 171 RAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELT--FF-----AL--------NPELNVV 235 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~--~~-----~l--------~p~i~ii 235 (493)
.+ ...+.+||.++++.+.++|+++|+++|+|||+.+ |+...-.. +. .+ .+...++
T Consensus 72 ------~~--~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d--D~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~vi 141 (185)
T cd01992 72 ------PG--GNLEAAAREARYDFFAEIAKEHGADVLLTAHHAD--DQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLI 141 (185)
T ss_pred ------CC--CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH--HHHHHHHHHHHccCCcccccCCCcccCCCCCeEE
Confidence 01 1223467999999999999999999999999875 66542111 11 01 1247899
Q ss_pred eccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCc
Q 011097 236 APWREWDIQGREDAIEYAKKHNVPVPVTKKSIYS 269 (493)
Q Consensus 236 ~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS 269 (493)
+||+++ +|+|+++||+++|+|+.. ..|+++
T Consensus 142 rPl~~~---~k~eI~~~~~~~~l~~~~-~~~~~~ 171 (185)
T cd01992 142 RPLLGI---TRAEIEAYLRENGLPWWE-DPSNED 171 (185)
T ss_pred CCCCCC---CHHHHHHHHHHcCCCeEE-CCCCCC
Confidence 999986 799999999999999864 245443
No 32
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.81 E-value=2.2e-19 Score=173.45 Aligned_cols=169 Identities=25% Similarity=0.359 Sum_probs=126.3
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhh-hhHHHh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYI-FPCLRA 172 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i-~~~i~~ 172 (493)
++|.+|.+|||+||+++++|+++. +++|+++++|+||+ ..|++.++++|++||| +++|+|+. +..++- ......
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~-~~ev~alsfdYGQrh~~Ele~A~~iak~lgv-~~~iid~~--~~~~~~~saLtd~ 77 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKE-GYEVHALTFDYGQRHRKELEAAKELAKKLGV-PHHIIDVD--LLGEIGGSALTDD 77 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhc-CCEEEEEEeeCCCCcHHHHHHHHHHHHHcCC-CeEEechh--HHhhcCCCcCcCC
Confidence 478999999999999999999998 89999999999996 4789999999999999 89999985 221111 111111
Q ss_pred C-ccccCc-----ccccccCcHHHHH-HHHHHHHHHcCCcEeeeCCCC---CCCChHH------HHHHHH-hcCCCCe-E
Q 011097 173 G-AIYERK-----YLLGTSMARPVIA-KAMVDVAREVGADAVAHGCTG---KGNDQVR------FELTFF-ALNPELN-V 234 (493)
Q Consensus 173 ~-a~y~g~-----y~~~~~~~R~l~~-~~l~~~A~e~Gad~IAtGhn~---~gnD~~r------~~~~~~-~l~p~i~-i 234 (493)
+ ...... .|.+..++|++++ .+...+|..+|++.|++|.|. .++..+| ++..++ ++...++ +
T Consensus 78 ~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~l~~~~~~~~i 157 (222)
T COG0603 78 SIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEALNLGTEKGVRII 157 (222)
T ss_pred CccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCCCHHHHHHHHHHHHhhccCCccEE
Confidence 1 111112 2455568999876 788889999999999999875 3444444 233332 3445567 5
Q ss_pred EeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCccc
Q 011097 235 VAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRD 271 (493)
Q Consensus 235 i~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d 271 (493)
.+||.++ +|.|+++.+.+.|.|+..|..| |..+
T Consensus 158 ~aPl~~l---~Ka~iv~l~~elg~~~~~T~SC-Y~g~ 190 (222)
T COG0603 158 HAPLMEL---TKAEIVKLADELGVPLELTWSC-YNGG 190 (222)
T ss_pred eCCeeec---cHHHHHHHHHHhCCcchhceEE-eCCC
Confidence 9999975 7999999999999999887777 6543
No 33
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.81 E-value=1.5e-19 Score=183.37 Aligned_cols=169 Identities=22% Similarity=0.351 Sum_probs=122.4
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
||+||+|||+||++++++|++.+|.+|+|+|+|.|+ +..|.+.++++|+++|+.+++++|+++.|.+..- .+ .+.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl~~l~--~v-~np- 76 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASERFLSALK--GV-TDP- 76 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHhc--CC-CCH-
Confidence 689999999999999999998669999999999998 3468899999999988537999999988865421 00 000
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcC-CcEeeeCCCCCCCChHHHHH------HHH------hcC--CCCeEEecccc
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVG-ADAVAHGCTGKGNDQVRFEL------TFF------ALN--PELNVVAPWRE 240 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~G-ad~IAtGhn~~gnD~~r~~~------~~~------~l~--p~i~ii~PLr~ 240 (493)
.+.||. |+..+++.+.++|+++| +++||+|||.+ |...... .++ ++. .+.++++||++
T Consensus 77 e~rr~~-----~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~d--D~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~PL~~ 149 (295)
T cd01997 77 EEKRKI-----IGETFIEVFEEEAKKLGLAEYLAQGTLYP--DVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEPLRD 149 (295)
T ss_pred HHHHHH-----hhHHHHHHHHHHHHHcCCCCEEEECCccc--chhhhcccccccccccccccccccchHhhCCccccccc
Confidence 012232 34577889999999999 99999999975 5432111 011 111 14689999998
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccC
Q 011097 241 WDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEG 281 (493)
Q Consensus 241 ~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg 281 (493)
+ +|+|++++|+++|+|.......|++. .|| .+++.|
T Consensus 150 l---~K~EVR~lar~lGLp~~~~~~~Pfp~-p~L-a~Ri~g 185 (295)
T cd01997 150 L---FKDEVRELGRELGLPEEIVERHPFPG-PGL-AVRILG 185 (295)
T ss_pred C---cHHHHHHHHHHcCCCchhhCCCCCCC-Ccc-eeEEec
Confidence 5 79999999999999974323455543 344 455543
No 34
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.81 E-value=7.8e-19 Score=183.65 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=120.8
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcC-------CceEEEEcCcHHHHHhhhh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASG-------ACQLVVKDLKEEFVKDYIF 167 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LG-------I~~~~VvDl~eef~~~~i~ 167 (493)
..||++++|||+||+|++++|++. |++|+++|++.|. .+.+.++++|+.|+ + +++++++. |..++..
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~kr-G~~V~~v~f~~g~--~~~e~v~~la~~L~~~~~~~~i-~l~~v~~~--~~~~v~~ 253 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKR-GVEVIPVHIYMGE--KTLEKVRKIWNQLKKYHYGGKA-ELIVVKPQ--ERERIIQ 253 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHc-CCeEEEEEEEeCH--HHHHHHHHHHHHhcccccCCcc-eEEEEChH--HHHHHHH
Confidence 479999999999999999999997 9999999999884 57899999999998 4 57777763 3323333
Q ss_pred hHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHH----HHHhcCCCCeEEeccccCCC
Q 011097 168 PCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFEL----TFFALNPELNVVAPWREWDI 243 (493)
Q Consensus 168 ~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~----~~~~l~p~i~ii~PLr~~~l 243 (493)
++... +...| .|..||.++++.+.++|+++|+++|+|||++. |+.-|+ +.....+.+++++||..+
T Consensus 254 ~i~~~---~~~~~--~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslg---qvaSQtl~Nl~~i~~~~~lpilRPLi~~-- 323 (381)
T PRK08384 254 KLKEL---KKENY--TCVFCKFMMVKHADRIAKEFGAKGIVMGDSLG---QVASQTLENMYIVSQASDLPIYRPLIGM-- 323 (381)
T ss_pred HHHHh---ccCCC--chHHHHHHHHHHHHHHHHHcCCCEEEEcccch---hHHHHHHHHHHHHhccCCCcEEeeCCCC--
Confidence 33322 22233 46678888999999999999999999999873 443332 222234468999999976
Q ss_pred CCHHHHHHHHHHCC-CCCCCCCCCCCcccCcc
Q 011097 244 QGREDAIEYAKKHN-VPVPVTKKSIYSRDRNL 274 (493)
Q Consensus 244 ~sKeEi~~yA~~~G-Ip~~~t~~cpyS~d~nl 274 (493)
+|+|++++|++.| +++. ..|+ +|.||
T Consensus 324 -dK~EIi~~Ar~iGT~~~s---~~~~-~dc~f 350 (381)
T PRK08384 324 -DKEEIVAIAKTIGTFELS---TLPE-DEIPF 350 (381)
T ss_pred -CHHHHHHHHHHcCCcccc---cCCC-CceEE
Confidence 6999999999999 6653 3667 65444
No 35
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.80 E-value=2e-19 Score=195.19 Aligned_cols=159 Identities=21% Similarity=0.293 Sum_probs=116.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHH-HHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEE-KAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~-~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++|+||+|||+||++++++|++.+|.+|+|+|+|.|. +..|.+.+++ +|+++|+ +++++|+++.|.++. . -+ .+
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi-~~~vvd~~~~f~~~l-~-g~-~~ 291 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGL-NLIHVDASDRFLSAL-A-GV-TD 291 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCC-cEEEEccHHHHHHhc-c-CC-CC
Confidence 6899999999999999999988779999999999997 3456777776 6799999 899999988876542 0 00 01
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHc-CCcEeeeCCCCCCCChHHHHH-----------HHHhcCC--CCeEEeccc
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREV-GADAVAHGCTGKGNDQVRFEL-----------TFFALNP--ELNVVAPWR 239 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~-Gad~IAtGhn~~gnD~~r~~~-----------~~~~l~p--~i~ii~PLr 239 (493)
. -+.|+. |....+..+.++|++. |+++||||||++ |+..... .+.++.+ ..++++||+
T Consensus 292 ~-~~~r~~-----~~~~~~~~~~~~a~~~~g~~~latGhn~d--D~~Et~~~~~~~~ik~~~~l~Gl~~~~~~~ii~PL~ 363 (511)
T PRK00074 292 P-EEKRKI-----IGREFIEVFEEEAKKLGGVKFLAQGTLYP--DVIESGGTKKAATIKSHHNVGGLPEDMKLKLVEPLR 363 (511)
T ss_pred c-HHhhhh-----hhHHHHHHHHHHHHHccCCCEEEECCCcc--hhhhhcCCCCccccccccCccCcChhHhcccccchh
Confidence 0 012232 3344568899999999 999999999986 6543210 0001211 257999999
Q ss_pred cCCCCCHHHHHHHHHHCCCCCCCC--CCCCCc
Q 011097 240 EWDIQGREDAIEYAKKHNVPVPVT--KKSIYS 269 (493)
Q Consensus 240 ~~~l~sKeEi~~yA~~~GIp~~~t--~~cpyS 269 (493)
++ +|+|+++||+++|||+... ..||++
T Consensus 364 ~l---~K~EIr~~a~~~gLp~~~~~~~p~p~~ 392 (511)
T PRK00074 364 EL---FKDEVRKLGLELGLPEEIVYRHPFPGP 392 (511)
T ss_pred hc---CHHHHHHHHHHcCCCHHHhCCCCCCCC
Confidence 85 7999999999999995433 345554
No 36
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.79 E-value=5e-19 Score=172.56 Aligned_cols=150 Identities=27% Similarity=0.421 Sum_probs=121.1
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
.+||+||||||+|||+++++..+.+|-+|+|+|+|.+- +..+++.|+..|+++|| +|.++++.. +.|....|
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi-~H~~i~~~~------~~~~~~~n 89 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGI-RHEFIKMNR------MDPEFKEN 89 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCC-cceeeehhh------cchhhccC
Confidence 45999999999999999999988889999999999975 34689999999999999 899998742 22333333
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHH
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYA 253 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA 253 (493)
.. +.|| +|+..++..+.+.|.+.|.|+|+.|.|.+ |.....+.+.+.. ...+-.||.+..+ +|+|++++|
T Consensus 90 ~~-~rCY-----~CK~~v~~~l~~~a~~~Gyd~V~dGtNas--Dl~~~RPG~rA~k-E~gi~sPl~e~gi-tk~eIre~a 159 (269)
T COG1606 90 PE-NRCY-----LCKRAVYSTLVEEAEKRGYDVVADGTNAS--DLFDYRPGLRALK-ELGIRSPLAEFGI-TKKEIREIA 159 (269)
T ss_pred CC-Ccch-----HHHHHHHHHHHHHHHHcCCCEEEeCCcHH--HhcCCCcchhhHH-hcCCCChHHHhCC-cHHHHHHHH
Confidence 32 3455 45788999999999999999999999976 5544444444443 3467889999888 699999999
Q ss_pred HHCCCCCC
Q 011097 254 KKHNVPVP 261 (493)
Q Consensus 254 ~~~GIp~~ 261 (493)
+..|+++.
T Consensus 160 ~~lgl~~~ 167 (269)
T COG1606 160 KSLGLPTW 167 (269)
T ss_pred HHcCCCcc
Confidence 99999985
No 37
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.78 E-value=1.2e-18 Score=168.81 Aligned_cols=167 Identities=23% Similarity=0.329 Sum_probs=105.8
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhh-hHHHhCc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIF-PCLRAGA 174 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~-~~i~~~a 174 (493)
|+||++|||+||+++++++++. +++|+++++|+||. ..|++.++++|+.+|+++|+++|++. + .++.. .+.....
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~-~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~-~-~~~~~s~L~~~~~ 77 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE-GYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSF-L-KEIGGSALTDDSI 77 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH--SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CH-H-HHCSCHHHHHTT-
T ss_pred CEEEEeCCCHHHHHHHHHHHHc-CCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHH-H-HhhCCCcccCCCc
Confidence 7999999999999999999998 99999999999996 46899999999999997899999972 1 11111 1111110
Q ss_pred -c----c-cCcccccccCcHHHHH-HHHHHHHHHcCCcEeeeCCCCC---CCChHH------HHHHHH-hcCCCCeEEec
Q 011097 175 -I----Y-ERKYLLGTSMARPVIA-KAMVDVAREVGADAVAHGCTGK---GNDQVR------FELTFF-ALNPELNVVAP 237 (493)
Q Consensus 175 -~----y-~g~y~~~~~~~R~l~~-~~l~~~A~e~Gad~IAtGhn~~---gnD~~r------~~~~~~-~l~p~i~ii~P 237 (493)
. + +...+....+.|++++ .++..+|...|++.|+.|.+.. +...++ ++..+. .....+++.+|
T Consensus 78 ~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~~~~~~~v~i~~P 157 (209)
T PF06508_consen 78 EVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLNLGEGGPVRIETP 157 (209)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHHHHTS--EEE-T
T ss_pred CCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHHhcCCCCEEEEec
Confidence 0 0 1223333356899775 7778899999999999998753 222222 222222 23457999999
Q ss_pred cccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 238 WREWDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 238 Lr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
+.++ +|.|+++.+.++|+|+..|..| |..
T Consensus 158 ~~~~---tK~eiv~~~~~lg~~~~~T~SC-y~~ 186 (209)
T PF06508_consen 158 LIDL---TKAEIVKLGVELGVPLELTWSC-YRG 186 (209)
T ss_dssp TTT-----HHHHHHHHHHTTHHHHH-B-S-TTS
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHccCC-CCC
Confidence 9986 7999999999999998877777 544
No 38
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.75 E-value=8.9e-18 Score=161.16 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=113.6
Q ss_pred EEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcH--HHHHhhhh-----hH
Q 011097 98 VVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKE--EFVKDYIF-----PC 169 (493)
Q Consensus 98 VvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~e--ef~~~~i~-----~~ 169 (493)
++|++|||+||+++++++++. |++|.++++|+|+. .+|++.++++|+++|+ +++++|+.. .|....+. +.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~-g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE-GYEVHAITFDYGQRHSRELESARKIAEALGI-EHHVIDLSLLKQLGGSALTDESEIPP 78 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc-CCcEEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEechhhcccccccccCCCCCCC
Confidence 589999999999999999886 99999999999974 3688999999999999 899999862 11100000 00
Q ss_pred HHhCccccCcccccccCcHHHHH-HHHHHHHHHcCCcEeeeCCCCCCC----ChH-HH----HHHHH-hcCCCCeEEecc
Q 011097 170 LRAGAIYERKYLLGTSMARPVIA-KAMVDVAREVGADAVAHGCTGKGN----DQV-RF----ELTFF-ALNPELNVVAPW 238 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~-~~l~~~A~e~Gad~IAtGhn~~gn----D~~-r~----~~~~~-~l~p~i~ii~PL 238 (493)
...+. ....+.-+.++|+.++ ..+..+|++.|++.|++|++.... |.. -| +.... .....+++++||
T Consensus 79 ~~~~~--~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~~~~~~~i~~Pl 156 (201)
T TIGR00364 79 QKSNE--EDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLGMLTPVKIRAPL 156 (201)
T ss_pred cCccc--cCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEECC
Confidence 01110 0001111224677765 889999999999999999986421 111 11 11111 123458899999
Q ss_pred ccCCCCCHHHHHHHHHHCC---CCCCCCCCC
Q 011097 239 REWDIQGREDAIEYAKKHN---VPVPVTKKS 266 (493)
Q Consensus 239 r~~~l~sKeEi~~yA~~~G---Ip~~~t~~c 266 (493)
.++ +|.||+++|+++| +|+..|..|
T Consensus 157 ~~~---~K~eI~~la~~~g~~~~~~~~t~sC 184 (201)
T TIGR00364 157 MDL---TKAEIVQLADELGVLDLVIKLTYSC 184 (201)
T ss_pred cCC---CHHHHHHHHHHcCCccccHhhCCcC
Confidence 985 7999999999999 887666566
No 39
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.74 E-value=3.3e-17 Score=171.53 Aligned_cols=151 Identities=24% Similarity=0.297 Sum_probs=112.3
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC--cccHHHHHHHHHHc---C--CceEEEEcCcHHHHHhh
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG--IKELDGLEEKAKAS---G--ACQLVVKDLKEEFVKDY 165 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~--~ed~e~a~~~A~~L---G--I~~~~VvDl~eef~~~~ 165 (493)
+..+||+|++|||+||+|++++|++. |++|+++|+|+|+. .++.+.++++|+.+ | + +++++|+.+.+ +++
T Consensus 170 g~~~kvlvllSGGiDS~vaa~ll~kr-G~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~-~l~~v~~~~~~-~~i 246 (371)
T TIGR00342 170 GTQGKVLALLSGGIDSPVAAFMMMKR-GCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSV-KLYVFDFTDVQ-EEI 246 (371)
T ss_pred CcCCeEEEEecCCchHHHHHHHHHHc-CCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCc-eEEEEeCHHHH-HHH
Confidence 34479999999999999999999887 99999999999873 36788899999988 3 4 68888886543 221
Q ss_pred hhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCC-ChHHHHHHHHhcCCCCeEEeccccCCCC
Q 011097 166 IFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGN-DQVRFELTFFALNPELNVVAPWREWDIQ 244 (493)
Q Consensus 166 i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gn-D~~r~~~~~~~l~p~i~ii~PLr~~~l~ 244 (493)
... . ...| .|..||+++++.+.++|++.||++|+||||+.+. +|...+.........+.+++||..+
T Consensus 247 ----~~~-~--~~~~--~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~~~~~I~rPLi~~--- 314 (371)
T TIGR00342 247 ----IHI-I--PEGY--TCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAVSNTPILRPLIGM--- 314 (371)
T ss_pred ----Hhc-C--CCCc--eeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhccCCCCEEeCCCCC---
Confidence 111 1 1112 3456788999999999999999999999997421 2222221111112358899999975
Q ss_pred CHHHHHHHHHHCCC
Q 011097 245 GREDAIEYAKKHNV 258 (493)
Q Consensus 245 sKeEi~~yA~~~GI 258 (493)
+|+||+++|++.|.
T Consensus 315 ~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 315 DKEEIIELAKEIGT 328 (371)
T ss_pred CHHHHHHHHHHhCC
Confidence 79999999999994
No 40
>PRK14561 hypothetical protein; Provisional
Probab=99.74 E-value=7.7e-17 Score=154.47 Aligned_cols=142 Identities=22% Similarity=0.238 Sum_probs=105.3
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
+||+|++|||+||+++++++.+. ++|.++|+++|+. .+++.++++|+.+|+ +|+++++.+.+.++.......
T Consensus 1 mkV~ValSGG~DSslll~~l~~~--~~v~a~t~~~g~~-~e~~~a~~~a~~lGi-~~~~v~~~~~~~~~~~~~~~~---- 72 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF--YDVELVTVNFGVL-DSWKHAREAAKALGF-PHRVLELDREILEKAVDMIIE---- 72 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc--CCeEEEEEecCch-hHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHHHHH----
Confidence 48999999999999999998774 7899999999985 579999999999999 899999987665443222222
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHH--HHHHHHhcC--CCCeEEeccccCCCCCHHHHHH
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVR--FELTFFALN--PELNVVAPWREWDIQGREDAIE 251 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r--~~~~~~~l~--p~i~ii~PLr~~~l~sKeEi~~ 251 (493)
..+|+. .+..+...++..++ .|+++||+|||.+ |... +...+.++. ..+++++||..+ +|+||++
T Consensus 73 --~~~P~~--~~~~l~~~~l~~~a--~g~~~Ia~G~n~D--D~~et~~r~~~~a~~~~~gi~iirPL~~~---~K~eI~~ 141 (194)
T PRK14561 73 --DGYPNN--AIQYVHEHALEALA--EEYDVIADGTRRD--DRVPKLSRSEIQSLEDRKGVQYIRPLLGF---GRKTIDR 141 (194)
T ss_pred --cCCCCc--hhHHHHHHHHHHHH--cCCCEEEEEecCC--CcchhccHHHHhhhhcCCCcEEEeeCCCC---CHHHHHH
Confidence 123332 23344555566655 9999999999986 5442 223344442 247889999965 7999999
Q ss_pred HHHHC
Q 011097 252 YAKKH 256 (493)
Q Consensus 252 yA~~~ 256 (493)
+|+++
T Consensus 142 la~~l 146 (194)
T PRK14561 142 LVERL 146 (194)
T ss_pred HHHhh
Confidence 99877
No 41
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.73 E-value=3.1e-17 Score=162.83 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=117.4
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC--cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG--IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~--~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~ 172 (493)
.++|+|++|||+||+++++++++..+.++++++++.|.. .++.+.++++|+.+|+ +++++|+.+.+... ......
T Consensus 22 ~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi-~~~~i~i~~~~~~~--~~~~~~ 98 (250)
T TIGR00552 22 AKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGI-NYKNIDIAPIAASF--QAQTET 98 (250)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCC-eEEEEcchHHHHHH--HHHhcc
Confidence 368999999999999999999886566999999998752 4689999999999999 89999998766411 000000
Q ss_pred CccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHH
Q 011097 173 GAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEY 252 (493)
Q Consensus 173 ~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~y 252 (493)
.. ......+.|.+|..+|+..|..+|++.|+.+|+|||+.. + +-.++.........++||.+. +|+|+++|
T Consensus 99 ~~-~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E--~---~~G~~t~~gd~~~~i~PL~~l---~K~eV~~l 169 (250)
T TIGR00552 99 GD-ELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSE--L---MLGYFTKYGDGGCDIAPIGDL---FKTQVYEL 169 (250)
T ss_pred cc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHH--H---hhCCeecccCCccCccccCCC---cHHHHHHH
Confidence 00 000001223334458999999999999999999999742 1 101111112234689999976 79999999
Q ss_pred HHHCCCCCCCCCCCCCcccCccc
Q 011097 253 AKKHNVPVPVTKKSIYSRDRNLW 275 (493)
Q Consensus 253 A~~~GIp~~~t~~cpyS~d~nl~ 275 (493)
|+.+|+|... ..+|.|. +||
T Consensus 170 A~~~g~p~~i-~~k~psa--~L~ 189 (250)
T TIGR00552 170 AKRLNVPERI-IEKPPTA--DLF 189 (250)
T ss_pred HHHHCccHHH-hCCCCCc--CCC
Confidence 9999999643 3567776 445
No 42
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.69 E-value=1.5e-16 Score=169.78 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=109.4
Q ss_pred CCCCCEEEEEEcCChHHHHHHHHHHH----ccCCeEEEEEEecCCCc---ccHHHHHHHHHHcCCceEEEEcCcHHHHHh
Q 011097 92 RGKLNKVVLAYSGGLDTSVIVPWLRE----NYGCEVVCFTADVGQGI---KELDGLEEKAKASGACQLVVKDLKEEFVKD 164 (493)
Q Consensus 92 ~~~~~KVvVA~SGG~DSsvll~~L~e----~~G~eViavtid~Gq~~---ed~e~a~~~A~~LGI~~~~VvDl~eef~~~ 164 (493)
+.++++|+||+|||+||++++++|.+ ..|++++++|+|+|+.. ++.+.++++|+++|| +++++++.....
T Consensus 12 l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i-~~~~~~~~~~~~-- 88 (436)
T PRK10660 12 LLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQV-PLVVERVQLDQR-- 88 (436)
T ss_pred cCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCC-cEEEEEEeccCC--
Confidence 34568999999999999999999973 23799999999999853 345789999999999 899987742100
Q ss_pred hhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHh------------cCC--
Q 011097 165 YIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFA------------LNP-- 230 (493)
Q Consensus 165 ~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~------------l~p-- 230 (493)
+ .....++|..|+..+.+.+.+. ++|+||||.+ |++. +.+.. +.|
T Consensus 89 -------------~--~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~D--Dq~E--T~L~~L~rG~g~~gL~gm~~~~ 147 (436)
T PRK10660 89 -------------G--LGIEAAARQARYQAFARTLLPG--EVLVTAQHLD--DQCE--TFLLALKRGSGPAGLSAMAEVS 147 (436)
T ss_pred -------------C--CCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchH--HHHH--HHHHHHHcCCChhhccccceec
Confidence 0 0111356888888887777763 6999999876 8874 22221 222
Q ss_pred ---CCeEEeccccCCCCCHHHHHHHHHHCCCCCCCC
Q 011097 231 ---ELNVVAPWREWDIQGREDAIEYAKKHNVPVPVT 263 (493)
Q Consensus 231 ---~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t 263 (493)
...+++||... +|+|+.+||..+|||+..+
T Consensus 148 ~~~~~~liRPLL~~---~k~ei~~ya~~~~l~~~~D 180 (436)
T PRK10660 148 PFAGTRLIRPLLAR---SREELEQYAQAHGLRWIED 180 (436)
T ss_pred ccCCCcEeCCCccC---CHHHHHHHHHHcCCCEEEC
Confidence 36799999976 7999999999999998653
No 43
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.68 E-value=6.6e-16 Score=166.87 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=113.8
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCc---ccHHHHHHHHHHcCCc---eEEEEcCcHHHHHhhhhh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGI---KELDGLEEKAKASGAC---QLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~---ed~e~a~~~A~~LGI~---~~~VvDl~eef~~~~i~~ 168 (493)
.+|+++++|||+||+|++++|++. |++|+++|+|+||.. .+.+.++++|++++.. +++++|+.+.+. +.
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~kr-G~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~-~i--- 251 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRR-GSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFEPVVG-EI--- 251 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHc-CCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecHHHHH-HH---
Confidence 379999999999999999999887 999999999999962 2577788888776631 588888876554 22
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHH--hcC--CCCeEEeccccCCCC
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFF--ALN--PELNVVAPWREWDIQ 244 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~--~l~--p~i~ii~PLr~~~l~ 244 (493)
+. +. ...| ++ ..+|.++.+++..+|++.||++|+||||+. |...+...+ ... ..+.+.+||..+
T Consensus 252 -~~-~~--~~~~-~~-~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~---dvasqtl~nl~~~~~~~~~~v~rPLi~~--- 319 (482)
T PRK01269 252 -LE-KV--DDGQ-MG-VVLKRMMLRAASKVAERYGIQALVTGEALG---QVSSQTLTNLRLIDNVTDTLILRPLIAM--- 319 (482)
T ss_pred -Hh-cC--CCce-ec-HHHHHHHHHHHHHHHHHcCCCEEEECcChH---hhhhHHHHHHHhhhhhcCCceecCCcCC---
Confidence 11 11 1111 22 245667788889999999999999999863 333333221 112 247899999986
Q ss_pred CHHHHHHHHHHCCC-CCCCCCCCCCc
Q 011097 245 GREDAIEYAKKHNV-PVPVTKKSIYS 269 (493)
Q Consensus 245 sKeEi~~yA~~~GI-p~~~t~~cpyS 269 (493)
+|+|++++|++.|+ ++. ..|||.
T Consensus 320 dK~EIi~~a~~ig~~~~s--~~~p~~ 343 (482)
T PRK01269 320 DKEDIIDLAREIGTEDFA--KTMPEY 343 (482)
T ss_pred CHHHHHHHHHHhCChhhc--ccCCCC
Confidence 79999999999997 543 468864
No 44
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.68 E-value=6.6e-16 Score=162.93 Aligned_cols=148 Identities=21% Similarity=0.261 Sum_probs=110.2
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEe---cCCCcccHHHHHHHHHHcC-----CceEEEEcCcHHHHHh
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTAD---VGQGIKELDGLEEKAKASG-----ACQLVVKDLKEEFVKD 164 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid---~Gq~~ed~e~a~~~A~~LG-----I~~~~VvDl~eef~~~ 164 (493)
....|++|++|||+||+|+++++.+. |++|.++|++ +++ ..+++.++++|+.++ + +|+++|+.+.. +.
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~-G~~v~av~~~~~~~~~-~~~~~~~~~~a~~l~~~~~~i-~~~vv~~~~~~-~~ 249 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKR-GVEIEAVHFHSPPYTS-ERAKEKVIDLARILAKYGGRI-KLHVVPFTEIQ-EE 249 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHC-CCEEEEEEEeCCCCCc-HHHHHHHHHHHHHHHHhcCCC-cEEEEECHHHH-HH
Confidence 33479999999999999999999886 9999999995 443 257788899999885 8 89999997532 22
Q ss_pred hhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCC-ChHHHHHHHHhc--CCCCeEEeccccC
Q 011097 165 YIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGN-DQVRFELTFFAL--NPELNVVAPWREW 241 (493)
Q Consensus 165 ~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gn-D~~r~~~~~~~l--~p~i~ii~PLr~~ 241 (493)
+..+.. .++ .|.+||.+++..+..+|++.|+++|+||+|..+. +|.+ ..+..+ ..++.+++||..+
T Consensus 250 -----i~~~~~--~~~--~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~--~~l~~i~~~~~~~V~rPLig~ 318 (394)
T PRK01565 250 -----IKKKVP--ESY--LMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTL--ESMYAINAVTNLPVLRPLIGM 318 (394)
T ss_pred -----HhhcCC--Cce--EEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHH--HHHHHHhhccCcEEEECCCCC
Confidence 111111 111 2345788999999999999999999999987421 2222 222222 2257899999865
Q ss_pred CCCCHHHHHHHHHHCCC
Q 011097 242 DIQGREDAIEYAKKHNV 258 (493)
Q Consensus 242 ~l~sKeEi~~yA~~~GI 258 (493)
+|+||+++|++.|.
T Consensus 319 ---~K~EI~~lAr~iG~ 332 (394)
T PRK01565 319 ---DKEEIIEIAKEIGT 332 (394)
T ss_pred ---CHHHHHHHHHHhCC
Confidence 79999999999996
No 45
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.68 E-value=3.1e-16 Score=143.51 Aligned_cols=154 Identities=20% Similarity=0.205 Sum_probs=113.4
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCC---eEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHh
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGC---EVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~---eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~ 172 (493)
+|+|++|||+||+|+++++.+. +. ++.++++|.|.. .+..+.++++|+++|+ ++.+++....+... .......
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~-~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~~~~~ 77 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKA-LPELKPVPVIFLDTGYEFPETYEFVDRVAERYGL-PLVVVRPPDSPAEG-LALGLKG 77 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHh-cccccCceEEEeCCCCCCHHHHHHHHHHHHHhCC-CeEEECCCccHHHH-HHHhhhc
Confidence 5899999999999999999886 55 899999999984 4678899999999999 89998876443211 0000000
Q ss_pred CccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHH----HhcCCCCeEEeccccCCCCCHHH
Q 011097 173 GAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTF----FALNPELNVVAPWREWDIQGRED 248 (493)
Q Consensus 173 ~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~----~~l~p~i~ii~PLr~~~l~sKeE 248 (493)
. .......+.||+.++...+.+++++.|.+.+++||+.+ |..+..... ....+...+++|+.+| +++|
T Consensus 78 ~---~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~d--e~~~r~~~~~~~~~~~~~~~~~~~Pl~~w---~~~d 149 (173)
T cd01713 78 F---PLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRD--ESARRALLPVVWTDDGKGGILKVNPLLDW---TYED 149 (173)
T ss_pred c---CCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccc--cchhhhhCccccccCCCCCcEEEcchhcC---CHHH
Confidence 0 00011223578888899999999999999999999765 444322111 0112457899999998 7999
Q ss_pred HHHHHHHCCCCCC
Q 011097 249 AIEYAKKHNVPVP 261 (493)
Q Consensus 249 i~~yA~~~GIp~~ 261 (493)
+.+|++.+|+|+.
T Consensus 150 i~~~~~~~~l~~~ 162 (173)
T cd01713 150 VWAYLARHGLPYN 162 (173)
T ss_pred HHHHHHHcCCCCC
Confidence 9999999999874
No 46
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.68 E-value=7.5e-16 Score=143.50 Aligned_cols=133 Identities=23% Similarity=0.377 Sum_probs=100.9
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
||+|++|||+||++++++|++. |++|+++++|.|+. ..+.+.++++|+.+| ++..++.++
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~---------------- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE-GYEVHALSFDYGQRHAKEEEAAKLIAEKLG--PSTYVPARN---------------- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc-CCcEEEEEEECCCCChhHHHHHHHHHHHHC--CCEEEeCcC----------------
Confidence 6899999999999999999987 99999999999975 357789999999999 333332211
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH-------HH----HHHHH-hcCCCCeEEeccccCCC
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV-------RF----ELTFF-ALNPELNVVAPWREWDI 243 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~-------r~----~~~~~-~l~p~i~ii~PLr~~~l 243 (493)
...+.++.++|++.|+++|++||+.. |.. .| +.... .....+++++||.++
T Consensus 62 -------------~~~~~~l~~~a~~~g~~~i~~G~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~PL~~~-- 124 (169)
T cd01995 62 -------------LIFLSIAAAYAEALGAEAIIIGVNAE--DYSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLIDL-- 124 (169)
T ss_pred -------------HHHHHHHHHHHHHCCCCEEEEeeccC--ccCCCCCCCHHHHHHHHHHHHhhcCCCeEEEeCcccC--
Confidence 12335788899999999999999874 321 11 11111 122347899999976
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCC
Q 011097 244 QGREDAIEYAKKHNVPVPVTKKS 266 (493)
Q Consensus 244 ~sKeEi~~yA~~~GIp~~~t~~c 266 (493)
+|+|++++++++|+|+..+..|
T Consensus 125 -~K~ei~~~~~~~g~~~~~s~sC 146 (169)
T cd01995 125 -SKAEIVRLGGELGVPLELTWSC 146 (169)
T ss_pred -CHHHHHHHHhHcCCChhheeec
Confidence 7999999999999998765455
No 47
>PLN02347 GMP synthetase
Probab=99.66 E-value=4.2e-16 Score=169.72 Aligned_cols=176 Identities=18% Similarity=0.301 Sum_probs=119.1
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHH-HHHHHHcCCceEEEEcCcHHHHHhhhhhHH
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGL-EEKAKASGACQLVVKDLKEEFVKDYIFPCL 170 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a-~~~A~~LGI~~~~VvDl~eef~~~~i~~~i 170 (493)
++.++|+||+|||+||+|+++++++.+|.+++|+++|.|+. ..|.+.+ +.+|+++|+ +++++|+++.|.+. +. -+
T Consensus 227 ~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi-~~~vvd~~e~fl~~-l~-~~ 303 (536)
T PLN02347 227 GPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHL-PVTCVDASERFLSK-LK-GV 303 (536)
T ss_pred ccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCC-cEEEEeCcHHHHhh-CC-CC
Confidence 33478999999999999999999996699999999999984 2345555 789999999 89999999988754 11 11
Q ss_pred HhCccccCcccccccCcHHHHHHHHH-HHHHHcCC--cEeeeCCCCCCCChHH--HHH--------HHHhc-----CC--
Q 011097 171 RAGAIYERKYLLGTSMARPVIAKAMV-DVAREVGA--DAVAHGCTGKGNDQVR--FEL--------TFFAL-----NP-- 230 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~~R~l~~~~l~-~~A~e~Ga--d~IAtGhn~~gnD~~r--~~~--------~~~~l-----~p-- 230 (493)
. +. .+.||-|+...- -.|..+. +++.++|. ++++.|++.. |... ... .+++. .|
T Consensus 304 ~-~p-e~k~~~~~~~f~--~~f~~~~~~~~~~~~~~~~~l~qGt~~~--D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~ 377 (536)
T PLN02347 304 T-DP-EKKRKIIGAEFI--EVFDEFAHKLEQKLGKKPAFLVQGTLYP--DVIESCPPPGSGRTHSHTIKSHHNVGGLPKD 377 (536)
T ss_pred C-Ch-HHhcchhCchHH--HHHHHHHHHHHHhhCCCCcEEccCCccc--ccccccCCCCCccccccceeeecccccChHH
Confidence 1 11 145666653110 2233333 56666666 8999999875 3321 100 11111 01
Q ss_pred -CCeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCc
Q 011097 231 -ELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGD 282 (493)
Q Consensus 231 -~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~ 282 (493)
..++++||+++ +|+|++++|+++|+|.......|++. .|| ++++.|.
T Consensus 378 ~~~~ii~PL~~l---~K~eVR~la~~lgl~~~~~~~~p~p~-p~L-a~Ri~g~ 425 (536)
T PLN02347 378 MKLKLIEPLKLL---FKDEVRKLGRLLGVPEAFLKRHPFPG-PGL-AVRVLGD 425 (536)
T ss_pred HHCccccchhhC---cHHHHHHHHHHcCCCHHHhcCCCcCC-CCE-EeeeCCc
Confidence 25899999985 69999999999999943334566664 355 3555443
No 48
>PRK08576 hypothetical protein; Provisional
Probab=99.64 E-value=2.3e-15 Score=159.86 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=121.9
Q ss_pred hHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHH
Q 011097 67 EPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAK 145 (493)
Q Consensus 67 ~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~ 145 (493)
..||++.+++++.+ .++++. ..+|+|++|||+||+++++++.+..+ ++.++++|.|.. .+..+.++++|+
T Consensus 214 N~~~le~~e~~~~~----~Lr~~~----~~rVvVafSGGKDStvLL~La~k~~~-~V~aV~iDTG~e~pet~e~~~~lae 284 (438)
T PRK08576 214 NREVLEAFEKASIK----FLRKFE----EWTVIVPWSGGKDSTAALLLAKKAFG-DVTAVYVDTGYEMPLTDEYVEKVAE 284 (438)
T ss_pred hHHHHHHHHHHHHH----HHHHcC----CCCEEEEEcChHHHHHHHHHHHHhCC-CCEEEEeCCCCCChHHHHHHHHHHH
Confidence 35899999999765 666653 24899999999999999999988644 699999999974 367899999999
Q ss_pred HcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHH-
Q 011097 146 ASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELT- 224 (493)
Q Consensus 146 ~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~- 224 (493)
.+|+ ++++.+...... +..... .. ..|.||..++...|.+++++.|++++++|+.. |+......
T Consensus 285 ~LGI-~lii~~v~~~~~-------~~~~g~--p~--~~~rcCt~lK~~pL~raake~g~~~iatG~R~---dES~~R~~~ 349 (438)
T PRK08576 285 KLGV-DLIRAGVDVPMP-------IEKYGM--PT--HSNRWCTKLKVEALEEAIRELEDGLLVVGDRD---GESARRRLR 349 (438)
T ss_pred HcCC-CEEEcccCHHHH-------hhhcCC--CC--cccchhhHHHHHHHHHHHHhCCCCEEEEEeeH---HHhHHhhcC
Confidence 9999 788844321110 010000 00 12335667888999999999999999999852 33322111
Q ss_pred --HHhcC---CCCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 225 --FFALN---PELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 225 --~~~l~---p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
+..-. +.+.++.|+.+| +.+|+..|+..+|||+.
T Consensus 350 p~v~~~~~~~~~v~rI~PL~~W---te~DV~~YI~~~gLP~n 388 (438)
T PRK08576 350 PPVVERKTNFGKILVVMPIKFW---SGAMVQLYILMNGLELN 388 (438)
T ss_pred CcccccccCCCCeEEEeChhhC---CHHHHHHHHHHhCCCCC
Confidence 00011 146789999998 79999999999999974
No 49
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.61 E-value=1.2e-14 Score=139.53 Aligned_cols=148 Identities=25% Similarity=0.348 Sum_probs=93.2
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC--CcccHHHHHHHHHHc---C----CceEEEEcCcHHHHHhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ--GIKELDGLEEKAKAS---G----ACQLVVKDLKEEFVKDYI 166 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq--~~ed~e~a~~~A~~L---G----I~~~~VvDl~eef~~~~i 166 (493)
.|+++++|||+||.|+++++.++ |.+|+++|++.+. .....+.++++++.+ + + +++++|+.+.+. +..
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~kr-G~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~-~l~~v~~~~~~~-~i~ 80 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKR-GCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKI-RLYVVDFTEVQK-EIL 80 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCB-T-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-E-EEEEECHHHHHH-HHH
T ss_pred ceEEEEecCCccHHHHHHHHHHC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcce-eEEEECcHHHHH-HHH
Confidence 69999999999999999999997 9999999999432 223455566655554 2 4 788899875443 221
Q ss_pred hhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC-CCChHHHHHHHHhcCCCCeEEeccccCCCCC
Q 011097 167 FPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK-GNDQVRFELTFFALNPELNVVAPWREWDIQG 245 (493)
Q Consensus 167 ~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~-gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~s 245 (493)
.. . ... +.|..||.++++.+.++|++.||+.|+||..+- -..|..-++..-.-..+..+++||..+ +
T Consensus 81 ----~~-~--~~~--~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~~~~~pIlRPLig~---d 148 (197)
T PF02568_consen 81 ----RG-V--KER--NPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVIESASDLPILRPLIGF---D 148 (197)
T ss_dssp ----HH-S---GG--GHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHHGGG--S-EE-TTTT-----
T ss_pred ----hc-C--Ccc--chhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhhhcccCCceeCCcCCC---C
Confidence 11 0 112 345678999999999999999999999998753 234444333322222268899999975 6
Q ss_pred HHHHHHHHHHCCC
Q 011097 246 REDAIEYAKKHNV 258 (493)
Q Consensus 246 KeEi~~yA~~~GI 258 (493)
|+||+++|++.|.
T Consensus 149 K~EIi~~Ar~Igt 161 (197)
T PF02568_consen 149 KEEIIEIARKIGT 161 (197)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999996
No 50
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.60 E-value=6.8e-15 Score=149.85 Aligned_cols=149 Identities=21% Similarity=0.310 Sum_probs=110.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHcc---CCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENY---GCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLR 171 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~---G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~ 171 (493)
++++|++||||||+|+++++++.+ +.++.++|+|.|.. .+.++.+.++|+++|+ +++++...+.+....
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl-~l~v~~~~~~i~~g~------ 100 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGL-ELIVHSNPEGIARGI------ 100 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCC-CEEEEeChHHHhcCC------
Confidence 579999999999999999998753 35788999999984 3668899999999999 899987654332110
Q ss_pred hCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH-HH-HHHHH------hc-----CC--------
Q 011097 172 AGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV-RF-ELTFF------AL-----NP-------- 230 (493)
Q Consensus 172 ~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~-r~-~~~~~------~l-----~p-------- 230 (493)
......+|.||+.++...|.+++++.|++++++||+.+ |.. |. +..+. .. .|
T Consensus 101 -----~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrD--E~~~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~~~~ 173 (301)
T PRK05253 101 -----NPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRD--EEKSRAKERIFSFRDEFGQWDPKNQRPELWNLYNG 173 (301)
T ss_pred -----CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccc--hhhhhccCccccccccccccCccccChhhhhhccc
Confidence 00011235678899999999999999999999999764 221 11 01110 00 01
Q ss_pred -----CCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 231 -----ELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 231 -----~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
...+++||.+| ++.||..|+..+|||+.
T Consensus 174 ~~~~g~~~rV~PL~~W---te~DIw~Yi~~~~IP~~ 206 (301)
T PRK05253 174 RINKGEHIRVFPLSNW---TELDIWQYIERENIPIV 206 (301)
T ss_pred cccCCCeEEEeehhhC---CHHHHHHHHHHcCCCCC
Confidence 24578999998 79999999999999985
No 51
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.60 E-value=6.8e-15 Score=145.91 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=110.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++|+|++|||+||+++++++++..+ .+|++++++.++. .++.+.++++|+.+|+ +++++++.+.|.. +.. .+...
T Consensus 24 ~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi-~~~~i~i~~~~~~-~~~-~~~~~ 100 (248)
T cd00553 24 KGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGI-EHVNIDIDPAVEA-FLA-LLGES 100 (248)
T ss_pred CCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCC-eEEEeccHHHHHH-HHH-HHhhh
Confidence 6899999999999999999988756 8999999999863 4789999999999999 8999999866542 111 11110
Q ss_pred ccccCccc---ccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHH
Q 011097 174 AIYERKYL---LGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAI 250 (493)
Q Consensus 174 a~y~g~y~---~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~ 250 (493)
.+..+ ..|..+-.+|+..+..+|++.|+.+++|||. ++..+ .++.........++|+.+. +|.|++
T Consensus 101 ---~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn~----~E~~~-G~~t~~gd~~~~i~Pl~~l---~K~eV~ 169 (248)
T cd00553 101 ---GGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGNK----SELLL-GYFTKYGDGAADINPIGDL---YKTQVR 169 (248)
T ss_pred ---cccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCcH----hHHHh-CCeeccCCcccCccccCCC---cHHHHH
Confidence 00011 1123344578889999999999999999872 21111 1111112235688999985 699999
Q ss_pred HHHHHCCCCCC
Q 011097 251 EYAKKHNVPVP 261 (493)
Q Consensus 251 ~yA~~~GIp~~ 261 (493)
++|+.+|+|..
T Consensus 170 ~la~~~~ip~~ 180 (248)
T cd00553 170 ELARYLGVPES 180 (248)
T ss_pred HHHHHHCchHH
Confidence 99999999953
No 52
>PRK13980 NAD synthetase; Provisional
Probab=99.53 E-value=9.3e-14 Score=139.24 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=106.3
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++|+|++|||+||+++++++.+.+| .+|++++++.+. ...+.+.++++|+.+|+ +++++++.+.+. .+. ..+...
T Consensus 31 ~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi-~~~~i~i~~~~~-~~~-~~~~~~ 107 (265)
T PRK13980 31 KGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGI-EYKVIEITPIVD-AFF-SAIPDA 107 (265)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCC-CeEEEECHHHHH-HHH-HHcccc
Confidence 6899999999999999999988655 799999999986 34689999999999999 899999874332 211 111110
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCC-CCeEEeccccCCCCCHHHHHHH
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNP-ELNVVAPWREWDIQGREDAIEY 252 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p-~i~ii~PLr~~~l~sKeEi~~y 252 (493)
.. ...|.+|..+|+..+..+|++.|+.++.||.. ++. + ..+..... ....+.|+.++ +|.|+++.
T Consensus 108 ---~~--~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~----sE~-~-~G~~t~~gD~~~~l~Pl~~l---~K~eV~~l 173 (265)
T PRK13980 108 ---DR--LRVGNIMARTRMVLLYDYANRENRLVLGTGNK----SEL-L-LGYFTKYGDGAVDLNPIGDL---YKTQVREL 173 (265)
T ss_pred ---cc--hHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH----hHH-H-hCCccCCCCcccCcccCCCC---cHHHHHHH
Confidence 00 01123455688899999999999999988731 111 1 11111111 23468999976 79999999
Q ss_pred HHHCCCC
Q 011097 253 AKKHNVP 259 (493)
Q Consensus 253 A~~~GIp 259 (493)
|+..|+|
T Consensus 174 a~~lgip 180 (265)
T PRK13980 174 ARHLGVP 180 (265)
T ss_pred HHHHCch
Confidence 9999998
No 53
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=99.50 E-value=1.8e-14 Score=144.79 Aligned_cols=210 Identities=13% Similarity=0.134 Sum_probs=157.1
Q ss_pred CcceEEEecccccccChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHc-----cCCeEEE
Q 011097 51 NGRAVVSSTCNVIRACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLREN-----YGCEVVC 125 (493)
Q Consensus 51 ~~~av~~~~~~g~~lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~-----~G~eVia 125 (493)
+..+.+..++.|+.+|+.||.+-||..+-. ++-+.+++.++.+|.++-|||+||+|+++.+... +|.++.-
T Consensus 11 ~~~~~i~rp~~~q~~c~~cf~~~fe~e~~~----ti~~n~l~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~L 86 (347)
T KOG2840|consen 11 VAKPTIRRPKQGQKLCGACFWEGFEAEIHP----TIVANKLFARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFL 86 (347)
T ss_pred cccchhcCcchhhHHHhhhhhhcchhhhhh----hHhccCccCCCCccccccccchhHHHHHHHHHHhhhhcCCCceeee
Confidence 344668889999999999999999999876 7777799999999999999999999999998542 5788999
Q ss_pred EEEecCCC---cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHc
Q 011097 126 FTADVGQG---IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREV 202 (493)
Q Consensus 126 vtid~Gq~---~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~ 202 (493)
+.+|.|+. ++.++.+++...++|+ |+.|+.+++.|..--.+..+..... .--+-|.+|.++++..+-+-|...
T Consensus 87 ls~degi~gyrd~sl~avkrn~~~~~l-PL~ivs~~dl~~~~tmd~i~~~i~~---~~rn~ctfCgv~RrqaL~~ga~~l 162 (347)
T KOG2840|consen 87 LSIDEGIRGYRDDSLEAVKRNGVQYGL-PLCIVSYKDLYGEWTMDEIVSEIGQ---EIRNNCTFCGVFRRQALDRGADVL 162 (347)
T ss_pred eeccccccceeccHHHHHHHhhhhcCC-ceEEecHHHHhccchHHHHHHHHhh---hhhcCceeecHHHHHHHHhhcccc
Confidence 99999985 3556778888899999 8999999987762112222221110 011334566799999999999999
Q ss_pred CCcEeeeCCCCCCCChHH-------------HHHHHHhcCC-----CCeEEeccccCCCCCHHHHHHHHHHCCCCCCCCC
Q 011097 203 GADAVAHGCTGKGNDQVR-------------FELTFFALNP-----ELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTK 264 (493)
Q Consensus 203 Gad~IAtGhn~~gnD~~r-------------~~~~~~~l~p-----~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~ 264 (493)
|++.++||||.+ |... .++.-....| .++..+||++. ++.|+..|+...-+.+- ..
T Consensus 163 ~~~~~~tghnaD--D~aetvl~n~lrgds~rl~R~~~~~t~~~e~~~~~r~kplk~~---~~keivLya~~~~L~yF-s~ 236 (347)
T KOG2840|consen 163 GAAELVTGHNAD--DWAETVLMNLLRGDSARLERLTEITTPSLEMGIIPRLKPLKYA---SEKEIVLYASLSKLRYF-ST 236 (347)
T ss_pred chhhhhhcccch--HHHHHHHHHHHHhHHHHhhhccccccCccccCccccccccccc---hhhehhhHHHHHHHHHH-HH
Confidence 999999999874 4432 1111111122 26778899865 69999999999977753 35
Q ss_pred CCCCcccCcc
Q 011097 265 KSIYSRDRNL 274 (493)
Q Consensus 265 ~cpyS~d~nl 274 (493)
+|-|+.++..
T Consensus 237 eCv~ap~a~r 246 (347)
T KOG2840|consen 237 ECVKAPGASR 246 (347)
T ss_pred hhccCCcchH
Confidence 7999986644
No 54
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.49 E-value=1.2e-13 Score=136.75 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=111.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++|+|++||||||+|+++++.+. +.++.++++|.|.. .+.++.++++++++|+ +++++...+.+.... ...+.
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~-~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl-~l~v~~~~~~~~~~~----~~~~~ 114 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV-DPDIPVIFLDTGYLFPETYRFIDELTERLLL-NLKVYRPDASAAEQE----ARYGG 114 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHHHHHHHHhCC-CEEEECCCccHHHHH----HHcCC
Confidence 46999999999999999999986 88999999999984 4678899999999999 899998875443221 11100
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAK 254 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~ 254 (493)
.+.......+.||..++...|.+++++.++ +++|++..... .|.........+....+.|+.+| +.+|+..|+.
T Consensus 115 ~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~-~R~~~~~~~~~~~~~rv~Pi~~W---t~~dV~~Yi~ 188 (241)
T PRK02090 115 LWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSG-TRANLPVLEIDGGRFKINPLADW---TNEDVWAYLK 188 (241)
T ss_pred CccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCc-hhccCceeeecCCeEEEeehhhC---CHHHHHHHHH
Confidence 000000123457888999999999999888 88999753111 11111111112356889999998 7999999999
Q ss_pred HCCCCCC
Q 011097 255 KHNVPVP 261 (493)
Q Consensus 255 ~~GIp~~ 261 (493)
.+|||+.
T Consensus 189 ~~~lp~~ 195 (241)
T PRK02090 189 EHDLPYH 195 (241)
T ss_pred HcCCCCC
Confidence 9999974
No 55
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.49 E-value=4.6e-13 Score=128.50 Aligned_cols=153 Identities=23% Similarity=0.220 Sum_probs=109.7
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhH
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-------IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPC 169 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~ 169 (493)
||++++||||||++++++++++ |++|++++++.+.. ..+++.++++|+.+|+ |++++++... .++
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~-G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgi-pl~~i~~~~~-~e~----- 72 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE-GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGI-PLIRIEISGE-EED----- 72 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCC-cEEEEeCCCC-chH-----
Confidence 6899999999999999999997 99999999986552 1378999999999999 8999987321 001
Q ss_pred HHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHH
Q 011097 170 LRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDA 249 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi 249 (493)
| +.-++..+.+++++ |++.|++|.+....-..+.+.....+ .++.++||=.. +++++
T Consensus 73 ----------~-------~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~--gl~~~~PLW~~---~~~~l 129 (194)
T cd01994 73 ----------E-------VEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERL--GLEPLAPLWGR---DQEEL 129 (194)
T ss_pred ----------H-------HHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHc--CCEEEecccCC---CHHHH
Confidence 1 12334566666777 99999999987532223345544544 48999996433 58888
Q ss_pred HHHHHHCCCCCCCCCCCCCcccCcccccccc
Q 011097 250 IEYAKKHNVPVPVTKKSIYSRDRNLWHLSHE 280 (493)
Q Consensus 250 ~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~e 280 (493)
++-....|+....++-+.+.-+..++|+.+.
T Consensus 130 l~e~~~~g~~~~iv~v~~~~L~~~~lG~~~~ 160 (194)
T cd01994 130 LREMIEAGFKAIIIKVAAEGLDESWLGREID 160 (194)
T ss_pred HHHHHHcCCeEEEEEeccCCCCHHHCCCCcc
Confidence 8777799998655444445556666665554
No 56
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.47 E-value=4.3e-13 Score=136.00 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=108.2
Q ss_pred EEEEEEcCChHHHHHHHHHHHcc---CCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHh
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENY---GCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~---G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~ 172 (493)
+.++++||||||+|+++++.+.+ +.++.++|+|.|.. .+.++.+.++|+++|+ +++++..++.+.... .++ .
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl-~l~v~~~~~~~~~g~-~~~-~- 96 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGL-RLIVHSNEEGIADGI-NPF-T- 96 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC-CEEEEechhhhhcCc-ccc-c-
Confidence 45789999999999999998763 46789999999985 3678899999999999 899998865443221 111 0
Q ss_pred CccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH-HHH-HHH------Hhc-----CC---------
Q 011097 173 GAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV-RFE-LTF------FAL-----NP--------- 230 (493)
Q Consensus 173 ~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~-r~~-~~~------~~l-----~p--------- 230 (493)
. .+..||+.++...|.+++++.|++++++|++.+ |.. |-. ..+ ... .|
T Consensus 97 ----~----~~~~~c~vlK~~pL~~al~e~g~da~itG~RRD--Ee~sRake~i~s~r~~~~~wD~~~q~Pelw~~~~~~ 166 (294)
T TIGR02039 97 ----E----GSALHTDIMKTEALRQALDKNQFDAAFGGARRD--EEKSRAKERIFSFRNAFHQWDPKKQRPELWNLYNGR 166 (294)
T ss_pred ----c----ChHHHhhHHHHHHHHHHHHHcCCCEEEecCChh--hhhHhhcCceeeccccccccCccccCchhhhccccc
Confidence 0 111367788889999999999999999999753 221 100 000 000 11
Q ss_pred ----CCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 231 ----ELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 231 ----~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
....++||.+| +..|+..|+..+|||+.
T Consensus 167 ~~~g~~~RV~PL~~W---Te~DVW~YI~~~~IP~~ 198 (294)
T TIGR02039 167 ISKGESVRVFPLSNW---TELDIWRYIAAENIPIV 198 (294)
T ss_pred cccCCcEEEechhhC---CHHHHHHHHHHcCCCCC
Confidence 24678999998 79999999999999984
No 57
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.45 E-value=6e-13 Score=131.42 Aligned_cols=163 Identities=26% Similarity=0.374 Sum_probs=115.3
Q ss_pred HHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHHHH-H
Q 011097 68 PKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEEKA-K 145 (493)
Q Consensus 68 ~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~~A-~ 145 (493)
+.|++....++++ .+ . .+||++|+|||+||+|++.++++..|-.++|+++|.|. ...+-+.+.+.. +
T Consensus 5 ~~~ie~~i~~ir~----~v------g-~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~ 73 (315)
T COG0519 5 ENFIEEAIEEIRE----QV------G-DGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFRE 73 (315)
T ss_pred HHHHHHHHHHHHH----Hh------C-CceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHh
Confidence 4566666666544 22 2 37999999999999999999998889999999999997 334556666654 5
Q ss_pred HcCCceEEEEcCcHHHHHhhhhhHHHhCccccCccccccc-CcHHHH----HHHHHHHHHHcCCcEeeeCCCCCCCChHH
Q 011097 146 ASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTS-MARPVI----AKAMVDVAREVGADAVAHGCTGKGNDQVR 220 (493)
Q Consensus 146 ~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~-~~R~l~----~~~l~~~A~e~Gad~IAtGhn~~gnD~~r 220 (493)
.+|+ ++.+||.++.|.... +|. +-| -.|.++ ...+.+.|++++++++|.|.-+. |...
T Consensus 74 ~~~~-nl~~VdA~~~Fl~~L-----------~Gv---tDPE~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYp--DvIE 136 (315)
T COG0519 74 HLGL-NLIVVDAKDRFLSAL-----------KGV---TDPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYP--DVIE 136 (315)
T ss_pred hcCC-ceEEEchHHHHHHHh-----------cCC---CCHHHHHHHHHHHHHHHHHHHHHhCCcceEEeccccc--ceee
Confidence 5999 899999999997542 111 111 124443 35667889999999999996542 2211
Q ss_pred HH----HHHHhc-----CC---CCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 221 FE----LTFFAL-----NP---ELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 221 ~~----~~~~~l-----~p---~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
-. ..+++. .| +++.+-|||+. -|+|+++.++.+|+|-.
T Consensus 137 S~~g~~~~IKSHHNVGGLP~~m~lkLvEPLr~L---fKDEVR~lg~~LGlp~~ 186 (315)
T COG0519 137 SGTGKAGTIKSHHNVGGLPEDMKLKLVEPLREL---FKDEVRELGRELGLPEE 186 (315)
T ss_pred ecCCCCCccccccccCCCccccceeeeHHHHHH---hHHHHHHHHHHhCCCHH
Confidence 00 112211 12 37899999997 49999999999999854
No 58
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.45 E-value=8.9e-13 Score=120.73 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=78.6
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCc-eEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGAC-QLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~-~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
.|+|++|||+||+++++++++..+.++.++|+|.|+. .++++.++++|++ |+. .+.+++..+ +.+.... .+..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~-~~~~~~~-~l~~-- 77 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEE-MKDLQLA-RFKA-- 77 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHH-HHHHHHH-HHhc--
Confidence 5899999999999999999887445999999999985 4568899999999 662 334444432 2222111 1111
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
....+|..|+.+++..+.++|++.|+++|++||+.
T Consensus 78 ----~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~ 112 (154)
T cd01996 78 ----KVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENP 112 (154)
T ss_pred ----ccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCH
Confidence 01234544677888999999999999999999975
No 59
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=99.43 E-value=1.7e-12 Score=126.76 Aligned_cols=148 Identities=22% Similarity=0.239 Sum_probs=103.3
Q ss_pred EEEEcCChHHHHHHHHHHHccCCeEEEE-EEec------CCCcccHHHHHHHHHHcCCceEEEEcCcH---HHHHhhhhh
Q 011097 99 VLAYSGGLDTSVIVPWLRENYGCEVVCF-TADV------GQGIKELDGLEEKAKASGACQLVVKDLKE---EFVKDYIFP 168 (493)
Q Consensus 99 vVA~SGG~DSsvll~~L~e~~G~eViav-tid~------Gq~~ed~e~a~~~A~~LGI~~~~VvDl~e---ef~~~~i~~ 168 (493)
++++|||+||++++++++++ |++|+++ |++. .+...+++.++++|+.+|+ ||++++++. ...
T Consensus 1 ~vl~SGGkDS~~al~~a~~~-G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgi-p~~~i~~~~~~~~~~------ 72 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEE-GHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGI-PLVKIETSGEKEKEV------ 72 (218)
T ss_pred CeeecCcHHHHHHHHHHHHc-CCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCC-CEEEEECCCCChHHH------
Confidence 47999999999999999997 9999755 6542 2223578999999999999 899999861 111
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHH
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGRED 248 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeE 248 (493)
.-++..+.+++++ |++.|++|.+.......+.+..... ..+++++||-.+ +++|
T Consensus 73 --------------------~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~--~gl~~~~PLw~~---~~~e 126 (218)
T TIGR03679 73 --------------------EDLKGALKELKRE-GVEGIVTGAIASRYQKSRIERICEE--LGLKVFAPLWGR---DQEE 126 (218)
T ss_pred --------------------HHHHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHh--CCCeEEeehhcC---CHHH
Confidence 1133455555555 9999999998763222333332222 258999998765 6999
Q ss_pred HHHHHHHCCCCCCCCCCCCCcccCcccccccc
Q 011097 249 AIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHE 280 (493)
Q Consensus 249 i~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~e 280 (493)
+++.+...|+....+.-+++--+..++|+.+.
T Consensus 127 l~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~ 158 (218)
T TIGR03679 127 YLRELVERGFRFIIVSVSAYGLDESWLGREID 158 (218)
T ss_pred HHHHHHHCCCEEEEEEEecCCCChHHCCCccC
Confidence 99999999998654333444445555565554
No 60
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.37 E-value=5.9e-12 Score=108.24 Aligned_cols=95 Identities=32% Similarity=0.458 Sum_probs=73.1
Q ss_pred EEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcccc
Q 011097 98 VVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYE 177 (493)
Q Consensus 98 VvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~ 177 (493)
|+|++|||+||+++++++++. +.++.++++|.|+.. +.+.+++.|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~------------------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL-GYQVIAVTVDHGISP-RLEDAKEIAKE------------------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh-CCCEEEEEEcCCCcc-cHHHHHHHHHH-------------------------------
Confidence 689999999999999999986 789999999999863 56677777766
Q ss_pred CcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc--------CCCCeEEeccc
Q 011097 178 RKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL--------NPELNVVAPWR 239 (493)
Q Consensus 178 g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l--------~p~i~ii~PLr 239 (493)
.++..+.++|++.|+++|++|||.+ |+.....+...+ ...++++.||.
T Consensus 48 ------------~r~~~~~~~a~~~g~~~i~~g~~~~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~ 103 (103)
T cd01986 48 ------------AREEAAKRIAKEKGAETIATGTRRD--DVANRALGLTALLNLTVTLSGAGIQSLEPLI 103 (103)
T ss_pred ------------HHHHHHHHHHHHcCCCEEEEcCCcc--hHHHHHHHHHHHhcCCCCcccCcceEeecCC
Confidence 3346788899999999999999876 666443322111 12467788863
No 61
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.31 E-value=1.3e-11 Score=128.16 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=85.8
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
.++||+|||+||++++++|++.+|.++.++|+|.|.. +.+.+.++++|+++|+ +|+++........+.....+..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgv-d~~~i~~d~~~~~~l~~~~~~~--- 136 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGF-DLHTITINPETFRKLQRAYFKK--- 136 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCC-CeEEEeCCHHHHHHHHHHHHhc---
Confidence 5999999999999999999666799999999999974 3467799999999999 7999887644333333333332
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK 214 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~ 214 (493)
...+|..|-..++..+.++|++.|+.+|++||+..
T Consensus 137 ----~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 137 ----VGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred ----cCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 12344334567788999999999999999999863
No 62
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.29 E-value=2.7e-11 Score=123.51 Aligned_cols=148 Identities=21% Similarity=0.290 Sum_probs=107.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHcc---CCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENY---GCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLR 171 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~---G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~ 171 (493)
+++++++||||||+|+++++++.+ +.++-.||+|.|.. .+-++...++|+++|+ ++++....+.+... ..+
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl-~Liv~~~~~~~~~G-~~~--- 112 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGL-DLVVHHNPDGIARG-IVP--- 112 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCC-cEEEecChHHHHhC-CCc---
Confidence 357899999999999999998752 46788999999985 4678889999999999 78888766554421 100
Q ss_pred hCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHH---HHHH------hcC-----C-------
Q 011097 172 AGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFE---LTFF------ALN-----P------- 230 (493)
Q Consensus 172 ~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~---~~~~------~l~-----p------- 230 (493)
+ ...++.||+.++...|.++..+.|++++.+|+.. |+.... ..+. ... |
T Consensus 113 ----~---~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RR---dE~~sRak~~ifs~r~~~~~wD~~~qrPelw~~~n 182 (312)
T PRK12563 113 ----F---RHGSALHTDVAKTQGLKQALDHHGFDAAIGGARR---DEEKSRAKERIFSFRSAFHRWDPKAQRPELWSLYN 182 (312)
T ss_pred ----c---cCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCH---HHhhhhccCceecccccccccCccccChhhhhhcc
Confidence 0 0112346677777889999999999999999853 222110 0010 011 1
Q ss_pred ------CCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 231 ------ELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 231 ------~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
....++||.+| |+.||..|...+|||+.
T Consensus 183 ~~~~~g~~~RV~PL~~W---Te~DVW~YI~~~~IP~~ 216 (312)
T PRK12563 183 ARLRRGESLRVFPLSNW---TELDVWQYIAREKIPLV 216 (312)
T ss_pred ccccCCceEEEecchhC---CHHHHHHHHHHcCCCCC
Confidence 24678999999 79999999999999984
No 63
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.26 E-value=1.1e-10 Score=115.70 Aligned_cols=149 Identities=18% Similarity=0.295 Sum_probs=98.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++++|++|||+||++++.++++.+| .+|+||+++.+.. ..+.+.++++|+.+|+ ++.++|+.+.|. .+.. .+...
T Consensus 19 ~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi-~~~~i~i~~~~~-~~~~-~~~~~ 95 (242)
T PF02540_consen 19 KGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGI-EYIVIDIDPIFD-AFLK-SLEPA 95 (242)
T ss_dssp SEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTS-EEEEEESHHHHH-HHHH-HHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCC-CeeccchHHHHH-HHhh-hhccc
Confidence 6899999999999999999988775 6899999995543 4689999999999999 899999986543 1111 11110
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC-CCCeEEeccccCCCCCHHHHHHH
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN-PELNVVAPWREWDIQGREDAIEY 252 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~-p~i~ii~PLr~~~l~sKeEi~~y 252 (493)
.. ....+ .+.-.+|...+..+|...|+-++.||. .......+.... ...--+.|+.+. +|.|+++.
T Consensus 96 ~~---~~~~~-Ni~aR~Rm~~ly~~a~~~~~lVlgT~N------~sE~~~Gy~T~~GD~~~d~~Pi~~L---~K~eV~~l 162 (242)
T PF02540_consen 96 DD---DLARG-NIQARIRMTTLYALANKYNYLVLGTGN------KSELLLGYFTKYGDGAGDIAPIADL---YKTEVREL 162 (242)
T ss_dssp HH---HHHHH-HHHHHHHHHHHHHHHHHHTEEEBE--C------HHHHHHTCSHTTTTTSSSBETTTTS----HHHHHHH
T ss_pred hh---hhhhh-hHHHHHHHHHHHHHhcccceEEecCCc------HHHhhcCcccccCcccccceeeCCc---CHHHHHHH
Confidence 00 00000 011135667788889888876666653 111111111121 123457999986 69999999
Q ss_pred HHHCCCCC
Q 011097 253 AKKHNVPV 260 (493)
Q Consensus 253 A~~~GIp~ 260 (493)
|+..|+|-
T Consensus 163 a~~l~ip~ 170 (242)
T PF02540_consen 163 ARYLGIPE 170 (242)
T ss_dssp HHHTTCGH
T ss_pred HHHHhhHH
Confidence 99999984
No 64
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.20 E-value=2.8e-10 Score=117.24 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=112.4
Q ss_pred ChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCC-CcccHHHHHHH
Q 011097 66 CEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQ-GIKELDGLEEK 143 (493)
Q Consensus 66 C~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq-~~ed~e~a~~~ 143 (493)
..+++.+++++.|++ .+. .++|+|++|||+||++++.++.+.+| .+|++++++.+. ..++.+.|+++
T Consensus 15 ~~e~i~~~l~~~V~~---------~~~--~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~l 83 (326)
T PRK00876 15 EAERIRAAIREQVRG---------TLR--RRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREV 83 (326)
T ss_pred HHHHHHHHHHHHHHH---------HcC--CCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHH
Confidence 456777788877643 121 24799999999999999999987656 589999999874 34789999999
Q ss_pred HHHcCCceEEEEcCcHHHH--------HhhhhhHHHhC-----------ccccCc-------------------------
Q 011097 144 AKASGACQLVVKDLKEEFV--------KDYIFPCLRAG-----------AIYERK------------------------- 179 (493)
Q Consensus 144 A~~LGI~~~~VvDl~eef~--------~~~i~~~i~~~-----------a~y~g~------------------------- 179 (493)
|+.+|+ +|+++++.+.+. ..++.+.+..- +..++.
T Consensus 84 A~~LGi-~~~~i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (326)
T PRK00876 84 AEHLGV-EYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDGLNVFSLVVQDPDGEVTRKRLPANA 162 (326)
T ss_pred HHHcCC-CEEEEECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccccccccccccccCccccccccccccch
Confidence 999999 899999986332 22222222110 000000
Q ss_pred cccccc---CcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc-CCCCeEEeccccCCCCCHHHHHHHHHH
Q 011097 180 YLLGTS---MARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL-NPELNVVAPWREWDIQGREDAIEYAKK 255 (493)
Q Consensus 180 y~~~~~---~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l-~p~i~ii~PLr~~~l~sKeEi~~yA~~ 255 (493)
|.-..+ +.-.+|...|..+|...|+=++.||. . ..+...+... +-..--+.|+.+. +|.|+.++|+.
T Consensus 163 ~~~~~~~~N~~aR~Rm~~ly~~A~~~~~lVlgT~N-k-----sE~~~Gy~TkyGD~~~d~~Pi~~L---~Kt~V~~La~~ 233 (326)
T PRK00876 163 YLQIVAATNFKQRTRKMVEYYHADRLNYAVAGTPN-R-----LEYDQGFFVKNGDGAADLKPIAHL---YKTQVYALAEH 233 (326)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCc-h-----hhHhhCCeeeecCccccchhccCC---CHHHHHHHHHH
Confidence 000000 11124567888889999987776663 1 1111111111 2224557899985 79999999999
Q ss_pred CCCCC
Q 011097 256 HNVPV 260 (493)
Q Consensus 256 ~GIp~ 260 (493)
.|+|-
T Consensus 234 l~vP~ 238 (326)
T PRK00876 234 LGVPE 238 (326)
T ss_pred hCCCH
Confidence 99983
No 65
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.16 E-value=3.5e-11 Score=111.28 Aligned_cols=152 Identities=25% Similarity=0.394 Sum_probs=94.2
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
.|+|++||||||+|+++++.+. +.++..+++|.|.. .+..+.++++++.+|+ +..+......+...+...- ..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~-~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~-~~--- 74 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREA-GRKVPVVFIDTGYEFPETYEFVDELAKRYGI-PIIVYRPPETFEQRFILYG-WP--- 74 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHH-HTTCEEEEEE-STB-HHHHHHHHHHHHHTTC-EEEEEETTSHHHHHHHHHH-HS---
T ss_pred CeEEEecCCHHHHHHHHHHHHh-cCCCcEEEEecCccCHHHHHHHHHHHhhhhh-hhhhcccccchhhcccccc-cc---
Confidence 3899999999999999999987 67778899999985 3567889999999999 7888777655543321110 00
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHh---cCCCCeEEeccccCCCCCHHHHHHH
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFA---LNPELNVVAPWREWDIQGREDAIEY 252 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~---l~p~i~ii~PLr~~~l~sKeEi~~y 252 (493)
...+.. .|+..++.+-+.++.++.+...+++|-..... ..|....... -.+....+.|+.+| +++|+.+|
T Consensus 75 -~~~~~~--~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es-~~R~~~~~~~~~~~~~~~~~~~Pi~~w---t~~dV~~y 147 (174)
T PF01507_consen 75 -SKLWRW--WCCSILKVKPLRRALKEYGKDVWIIGVRADES-PRRAKLPMFEFDEDNPKIIRVYPIADW---TEEDVWDY 147 (174)
T ss_dssp -TTHHHH--HHHHHHTHHHHHHHHHHTTESEEE----TTST-TGCCGSSSEEEETTTTSEEEE-TTTT-----HHHHHHH
T ss_pred -chhhhH--HHHHHHHHHHHhhhhcchHHHHHHHHHHhhch-hhhhhchhhhcccccCCEEEEEehhhC---CHHHHHHH
Confidence 000000 25567777888888899999999999743211 1121110000 11224577799998 79999999
Q ss_pred HHHCCCCCC
Q 011097 253 AKKHNVPVP 261 (493)
Q Consensus 253 A~~~GIp~~ 261 (493)
.+.+|+|+.
T Consensus 148 i~~~~l~~~ 156 (174)
T PF01507_consen 148 IKANGLPYN 156 (174)
T ss_dssp HHHHT--B-
T ss_pred HHHhcCCCc
Confidence 999999974
No 66
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.2e-10 Score=103.36 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=100.3
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIY 176 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y 176 (493)
+|-+.||||||||.++.+|.+ +||+|.-||++.|.- ++++.|++.|+.||. +|.|+.+..+..++.+.-++.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~k-lgyev~LVTvnFGv~-d~~k~A~~tA~~lgF-~h~vl~Ldr~ile~A~em~ie----- 73 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDK-LGYEVELVTVNFGVL-DSWKYARETAAILGF-PHEVLQLDREILEDAVEMIIE----- 73 (198)
T ss_pred ceEEEecCCCchhHHHHHHHH-hCCCcEEEEEEeccc-cchhhHHHHHHHhCC-CcceeccCHHHHHHHHHHHHh-----
Confidence 588999999999999988877 599999999999985 689999999999999 899999998887665444443
Q ss_pred cCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHH--HHHhcC--CCCeEEeccccCCCCCHHHHHHH
Q 011097 177 ERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFEL--TFFALN--PELNVVAPWREWDIQGREDAIEY 252 (493)
Q Consensus 177 ~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~--~~~~l~--p~i~ii~PLr~~~l~sKeEi~~y 252 (493)
..||.+. -..+-+.++++......+.||.|..- +|.+-+-+ -..++- -.+..+.||... .++-+..+
T Consensus 74 -dg~P~~a---Iq~iH~~alE~~A~r~~~~iaDGTRR--DDrvP~ls~~~~qSLEdR~nv~Yi~PL~G~---G~kti~~L 144 (198)
T COG2117 74 -DGYPRNA---IQYIHEMALEALASREVDRIADGTRR--DDRVPKLSRSEAQSLEDRLNVQYIRPLLGL---GYKTIRRL 144 (198)
T ss_pred -cCCCchH---HHHHHHHHHHHHHHHHHHHHcCCCcc--cccCccccHHHHhhHHHhcCceeecccccc---cHHHHHHH
Confidence 2344321 12333445555444478889999743 34432211 112221 148899999865 68888876
Q ss_pred HHHC
Q 011097 253 AKKH 256 (493)
Q Consensus 253 A~~~ 256 (493)
+...
T Consensus 145 v~~~ 148 (198)
T COG2117 145 VSAI 148 (198)
T ss_pred HHHH
Confidence 6543
No 67
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=99.14 E-value=1e-09 Score=114.52 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=101.8
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC--cccHHHHHHHH-HHc-----CCceEEEEcCcHHHHHhhh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG--IKELDGLEEKA-KAS-----GACQLVVKDLKEEFVKDYI 166 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~--~ed~e~a~~~A-~~L-----GI~~~~VvDl~eef~~~~i 166 (493)
..|+++.+|||.||-|+++++.+. |.+|.++|++.+-. ++..+.+..++ ..+ .+ .++++|+.+-.. ++
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~mkR-G~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~-~~~~v~f~~v~~-~i- 250 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMMKR-GVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKV-RLYVVPFTEVQE-EI- 250 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHHhc-CCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCce-EEEEEchHHHHH-HH-
Confidence 369999999999999999888887 99999999965432 12233333333 333 23 678888864332 21
Q ss_pred hhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHH----HHHhcCCCCeEEeccccCC
Q 011097 167 FPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFEL----TFFALNPELNVVAPWREWD 242 (493)
Q Consensus 167 ~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~----~~~~l~p~i~ii~PLr~~~ 242 (493)
... . ...| .|.++|..+++.+.++|++.||..|+||-.+- |+.-|+ ..-.......+++||..+
T Consensus 251 ---~~~-~--~~~y--~~v~~rR~M~riA~~iae~~g~~aIvtGEsLG---QVASQTl~nL~~i~~~t~~pIlRPLI~~- 318 (383)
T COG0301 251 ---LEK-V--PESY--RCVLLKRMMYRIAEKLAEEFGAKAIVTGESLG---QVASQTLENLRVIDSVTNTPVLRPLIGL- 318 (383)
T ss_pred ---Hhh-c--Cccc--eehHHHHHHHHHHHHHHHHhCCeEEEecCcch---hhhHhHHHHHHHHHhccCCceeccccCC-
Confidence 111 1 1123 34568999999999999999999999998763 333222 111123368999999976
Q ss_pred CCCHHHHHHHHHHCCCC
Q 011097 243 IQGREDAIEYAKKHNVP 259 (493)
Q Consensus 243 l~sKeEi~~yA~~~GIp 259 (493)
+|+||+++|++.|..
T Consensus 319 --DK~eIi~~Ar~IgT~ 333 (383)
T COG0301 319 --DKEEIIEIARRIGTY 333 (383)
T ss_pred --CHHHHHHHHHHhCCh
Confidence 699999999999963
No 68
>PTZ00323 NAD+ synthase; Provisional
Probab=99.13 E-value=1.3e-09 Score=110.84 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=104.9
Q ss_pred cChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCC------eEEEEEEecCCCcccHH
Q 011097 65 ACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGC------EVVCFTADVGQGIKELD 138 (493)
Q Consensus 65 lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~------eViavtid~Gq~~ed~e 138 (493)
+-.+.|++......++ .+++. ..++++||+|||+||++++.+..+.+|- .++++..-.+....+.+
T Consensus 24 ~~~~~~i~~~~~~L~~----~l~~~----g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~ 95 (294)
T PTZ00323 24 FNPAAWIEKKCAKLNE----YMRRC----GLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALN 95 (294)
T ss_pred CCHHHHHHHHHHHHHH----HHHHc----CCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHH
Confidence 4455666555544433 33331 2368999999999999999998876553 24444433332347899
Q ss_pred HHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccC-cccccc--cCcHHHHHHHHHHHHHHcCCcEeeeCC-CCC
Q 011097 139 GLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYER-KYLLGT--SMARPVIAKAMVDVAREVGADAVAHGC-TGK 214 (493)
Q Consensus 139 ~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g-~y~~~~--~~~R~l~~~~l~~~A~e~Gad~IAtGh-n~~ 214 (493)
.|+++|+.+|+ +++++|+.+.|.. ....+.......+ .+..+. +..|...-..+...+.+.|...|+.|. |.+
T Consensus 96 ~A~~la~~lGi-~~~~idi~~l~~~--~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~s 172 (294)
T PTZ00323 96 RGRENIQACGA-TEVTVDQTEIHTQ--LSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFD 172 (294)
T ss_pred HHHHHHHHhCC-cEEEEECcHHHHH--HHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCch
Confidence 99999999999 8999999865531 1122221100000 111111 112222223344445577888999997 543
Q ss_pred CCChHHHHHHHHhcC-CCCeEEeccccCCCCCHHHHHHHHHHCCCC
Q 011097 215 GNDQVRFELTFFALN-PELNVVAPWREWDIQGREDAIEYAKKHNVP 259 (493)
Q Consensus 215 gnD~~r~~~~~~~l~-p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp 259 (493)
| .. ...+.+.. -.+.-+.|+.++ +|.|++++|+..|+|
T Consensus 173 --E-~~-~~Gy~t~~GDg~~d~~pia~L---~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 173 --E-DG-YLGYFCKAGDGVVDVQLISDL---HKSEVFLVARELGVP 211 (294)
T ss_pred --h-hh-HhchHhhcCCCCcCchhhcCC---cHHHHHHHHHHcCCC
Confidence 2 11 11223222 234556677764 799999999999998
No 69
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.06 E-value=1.1e-09 Score=123.25 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=103.0
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cC---CeEEEEEEecCC--CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YG---CEVVCFTADVGQ--GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYI 166 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G---~eViavtid~Gq--~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i 166 (493)
.++|+|++|||+||++++.++.+. +| .+|+||++ .|. ...+.+.++++|+.||+ +|+++++++.+... +
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi-~~~~i~I~~~~~~~-~ 437 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGFATTDRTKNNAVALMKALGV-TAREIDIRPAALQM-L 437 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCCCCCHHHHHHHHHHHHHhCC-eEEEEEcHHHHHHH-H
Confidence 589999999999999988888765 35 89999999 554 23678999999999999 89999998766421 1
Q ss_pred hhHHHhCcccc-Ccccccc---cCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC--CCCeEEecccc
Q 011097 167 FPCLRAGAIYE-RKYLLGT---SMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN--PELNVVAPWRE 240 (493)
Q Consensus 167 ~~~i~~~a~y~-g~y~~~~---~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~--p~i~ii~PLr~ 240 (493)
..+... .. +...|.. .++-.+|...|+.+|.+.|+.+|+||. . .........+. -..--+.|+.+
T Consensus 438 -~~l~~~--~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn-~-----sE~~~Gy~T~~~GD~~~~~~~~~~ 508 (679)
T PRK02628 438 -KDIGHP--FARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGD-L-----SELALGWCTYGVGDHMSHYNVNAS 508 (679)
T ss_pred -HHhccc--cccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCc-h-----hhHHhCceecCCCCcccccccccC
Confidence 222211 00 1111211 134567889999999999999999992 1 21111112222 22566788887
Q ss_pred CCCCCHHHHHHHHHHCC
Q 011097 241 WDIQGREDAIEYAKKHN 257 (493)
Q Consensus 241 ~~l~sKeEi~~yA~~~G 257 (493)
. +|.++.++|+..+
T Consensus 509 l---~Kt~v~~l~~~~~ 522 (679)
T PRK02628 509 V---PKTLIQHLIRWVI 522 (679)
T ss_pred C---cHHHHHHHHHHHH
Confidence 5 7999998888765
No 70
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=99.05 E-value=3.3e-09 Score=103.88 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=102.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-------IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
+||++.+||||||+++++++.++ ++|+++..-.... ..+++.++..|+.+|+ |++.+....++.++
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~--~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algi-Pl~~~~~~~~~e~~---- 73 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE--HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGI-PLIKLYTSGEEEKE---- 73 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc--CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCC-CeEEEEcCCchhHH----
Confidence 37999999999999999999886 7999888765442 2578999999999999 78777654221111
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHH
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGRED 248 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeE 248 (493)
...+.+..++.|++.|++|.-...+-..+.+.....+ .++.++||=.. ++++
T Consensus 74 -----------------------~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~--gl~~~~PLW~~---d~~~ 125 (222)
T TIGR00289 74 -----------------------VEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCREL--GLKSIAPLWHA---DPEK 125 (222)
T ss_pred -----------------------HHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHc--CCEEeccccCC---CHHH
Confidence 1234455577799999999875432223455555555 48999996432 4777
Q ss_pred HHHHHHHCCCCCCCCCCCCCcccCcccccccc
Q 011097 249 AIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHE 280 (493)
Q Consensus 249 i~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~e 280 (493)
+.++. ..|+....+.-+.+.-+..++|+.+.
T Consensus 126 l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id 156 (222)
T TIGR00289 126 LMYEV-AEKFEVIIVSVSAMGLDESWLGRRID 156 (222)
T ss_pred HHHHH-HcCCeEEEEEEccCCCChHHcCCccC
Confidence 77654 78988655444445556666666654
No 71
>PRK08557 hypothetical protein; Provisional
Probab=99.03 E-value=4.1e-09 Score=112.01 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=102.1
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
+..|++++|||+||+|+++++.+. +.++..+++|.|.. .+..+.++++++++|+ ++++++- +.|.+.+ ..
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~-~~~i~vvfvDTG~efpET~e~ve~v~~~ygl-~i~v~~~-~~f~~~~-----~~- 251 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEV-IPDLEVIFIDTGLEYPETINYVKDFAKKYDL-NLDTLDG-DNFWENL-----EK- 251 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHh-CCCCEEEEEECCCCCHHHHHHHHHHHHHhCC-CEEEEec-hHHHHHH-----hh-
Confidence 357999999999999999999886 66788899999985 4678899999999999 7988874 3454321 11
Q ss_pred ccccCcccc--cccCcHHHHHHHHHHHHHH---cCCcEeeeCCCCCCCChHHHHHHHH---hcCCCCeEEeccccCCCCC
Q 011097 174 AIYERKYLL--GTSMARPVIAKAMVDVARE---VGADAVAHGCTGKGNDQVRFELTFF---ALNPELNVVAPWREWDIQG 245 (493)
Q Consensus 174 a~y~g~y~~--~~~~~R~l~~~~l~~~A~e---~Gad~IAtGhn~~gnD~~r~~~~~~---~l~p~i~ii~PLr~~~l~s 245 (493)
.| +|. ..-||+.++..-+.++.++ .+.....+|--... ...|...... ...+....+.|+.+| |
T Consensus 252 ---~G-~Ps~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~E-S~~Ra~~~~~~~~~~~~~~~~i~PI~~W---t 323 (417)
T PRK08557 252 ---EG-IPTKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYE-SFTRANLDYERKSGFIDFQTNVFPILDW---N 323 (417)
T ss_pred ---cc-CCcccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeeccc-chhhccCceecccccccCceeEEecccC---C
Confidence 11 111 1137777777777777766 34456778853210 0111111000 111223357999998 7
Q ss_pred HHHHHHHHHHCCCCCC
Q 011097 246 REDAIEYAKKHNVPVP 261 (493)
Q Consensus 246 KeEi~~yA~~~GIp~~ 261 (493)
..|+..|...+|+|+.
T Consensus 324 ~~dVW~YI~~~~lp~n 339 (417)
T PRK08557 324 SLDIWSYIYLNDILYN 339 (417)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999999984
No 72
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=99.03 E-value=3.6e-09 Score=104.98 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=79.7
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
..+|++++|||+||++++.++++..+..+.+++++.+.. .+|.+.++++|+.+|+ +|+++++...-..+.+...+...
T Consensus 15 ~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (269)
T cd01991 15 DVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGT-EHHEVEFTPADLLAALPDVIWEL 93 (269)
T ss_pred CCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCC-cceEEEcCHHHHHHHHHHHHHHh
Confidence 468999999999999999999886223478889888764 3568999999999999 89999887433222222222221
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
. .++..+-.+....+.+.|.+.|+.++.||+.+
T Consensus 94 ----~---~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~ 126 (269)
T cd01991 94 ----D---EPFADSSAIPLYLLSRLARKHGIKVVLSGEGA 126 (269)
T ss_pred ----C---CCCCCcHHHHHHHHHHHHHHhCCEEEEecCCc
Confidence 1 12212223455788899999999999999865
No 73
>PRK13794 hypothetical protein; Provisional
Probab=99.02 E-value=2.1e-09 Score=116.26 Aligned_cols=163 Identities=16% Similarity=0.132 Sum_probs=108.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++++|++|||+||+|+++++.+.++.++.++++|.|.. .+.++.++++++++|+ +++++... .|.+.. ....
T Consensus 248 ~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl-~i~~~~~~-~f~~~~-----~~~G 320 (479)
T PRK13794 248 KPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGL-EIIRTKSE-EFWEKL-----EEYG 320 (479)
T ss_pred CCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCC-cEEEEchH-HHHHHH-----HhcC
Confidence 58999999999999999998776577899999999985 4678889999999999 78887654 554321 1110
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHc--CCcEeeeCCCCCCCChH--HHHHHHHhc---CCCCeEEeccccCCCCCHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREV--GADAVAHGCTGKGNDQV--RFELTFFAL---NPELNVVAPWREWDIQGRE 247 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~--Gad~IAtGhn~~gnD~~--r~~~~~~~l---~p~i~ii~PLr~~~l~sKe 247 (493)
.. .....-||+.++..-+.++.++. |.....+|--. |+. |........ .+....+.|+.+| |..
T Consensus 321 ~P---~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~---~ES~~Ra~~~~~~~~~~~~~~~~~~PI~~W---t~~ 391 (479)
T PRK13794 321 PP---ARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRK---YESFNRSKKPRIWRNPYIKKQILAAPILHW---TAM 391 (479)
T ss_pred CC---CCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEc---CccHhHhcCcccccccCcCCcEEEechHhC---CHH
Confidence 00 00112367777777777776663 45677888532 222 211100001 1345578999999 799
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcccCcc
Q 011097 248 DAIEYAKKHNVPVPVTKKSIYSRDRNL 274 (493)
Q Consensus 248 Ei~~yA~~~GIp~~~t~~cpyS~d~nl 274 (493)
|+..|...+++|+..--..-|.+=-|.
T Consensus 392 dVw~Yi~~~~lp~npLY~~G~~riGC~ 418 (479)
T PRK13794 392 HVWIYLFREKAPYNKLYEQGFDRIGCF 418 (479)
T ss_pred HHHHHHHHcCCCCChHHHCCCCCCccc
Confidence 999999999999853223334443444
No 74
>PRK13795 hypothetical protein; Provisional
Probab=99.00 E-value=1.4e-09 Score=121.48 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=104.8
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++|+|++|||+||+|+++++.+. +.++.++++|.|.. .+..+.++++++.+|+ ++++++..+.|.+.+ ..
T Consensus 244 ~~v~Va~SGGKDS~vll~L~~~a-~~~~~vvfiDTg~efpet~e~v~~~~~~~gi-~i~~~~~~~~f~~~~-----~~-- 314 (636)
T PRK13795 244 LPVSVSFSGGKDSLVVLDLAREA-LKDFKAFFNNTGLEFPETVENVKEVAEEYGI-ELIEADAGDAFWRAV-----EK-- 314 (636)
T ss_pred CCEEEEecCcHHHHHHHHHHHHh-CCCcEEEEEeCCCCCHHHHHHHHHHHHHcCC-cEEEEcccHhHHHhh-----hc--
Confidence 58999999999999999999986 56788899999985 4678899999999999 899998877776432 11
Q ss_pred cccCccc--ccccCcHHHHHHHHHHHHHHcCC--cEeeeCCCCCCCCh--HHHHHHHHh---cCCCCeEEeccccCCCCC
Q 011097 175 IYERKYL--LGTSMARPVIAKAMVDVAREVGA--DAVAHGCTGKGNDQ--VRFELTFFA---LNPELNVVAPWREWDIQG 245 (493)
Q Consensus 175 ~y~g~y~--~~~~~~R~l~~~~l~~~A~e~Ga--d~IAtGhn~~gnD~--~r~~~~~~~---l~p~i~ii~PLr~~~l~s 245 (493)
+ | .| ...-||+.++..-+.++.++... ...++|-.. ++ .|....... ..|....+.|+.+| +
T Consensus 315 -~-g-~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr---~ES~~R~~~~~~~~~~~~~~~~~~~PI~~W---t 385 (636)
T PRK13795 315 -F-G-PPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRK---YESFSRAKSPRVWRNPWVPNQIGASPIQDW---T 385 (636)
T ss_pred -c-C-CCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEc---cchHHHhhCcccccCCCCCCcEEEechHhC---C
Confidence 0 1 11 11136677777777777776532 355677532 22 222111101 12345678999999 7
Q ss_pred HHHHHHHHHHCCCCCC
Q 011097 246 REDAIEYAKKHNVPVP 261 (493)
Q Consensus 246 KeEi~~yA~~~GIp~~ 261 (493)
..|+..|...+++|+.
T Consensus 386 ~~dVw~YI~~~~lp~n 401 (636)
T PRK13795 386 ALEVWLYIFWRKLPYN 401 (636)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999999975
No 75
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=98.99 E-value=7.2e-09 Score=99.23 Aligned_cols=149 Identities=23% Similarity=0.239 Sum_probs=95.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
.||+||+|||.||++.+.+|+.. |+.|...++-+. +.=-+.+++.|..+|+. .+|.++. ...+..++.
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~-g~~v~p~t~~Lp--~~ir~n~~~l~~~lg~~--------p~yveed-l~~i~kGal 128 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWA-GFTVDPGTAILP--DHIRRNKEELETLLGEV--------PEYVEED-LEDIEKGAL 128 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhh-ceeeccccccCC--HHHhHHHHHHHHHHccC--------HHHHHHH-HHHHHhhhc
Confidence 59999999999999999999886 755544444332 22235677889999983 2444332 233445554
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCC---eEEec-cccCCCCCHHHHHH
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPEL---NVVAP-WREWDIQGREDAIE 251 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i---~ii~P-Lr~~~l~sKeEi~~ 251 (493)
+|++ .+|.-|..++.+...+.|++.+++.+|+|.-+.-+-+ ++.++- +.--| +. .+ ||.|++.
T Consensus 129 -nGRf-hpCGRCh~~I~~~V~~k~re~di~~vafGDlLs~G~~--------svy~eD~i~rlnlPAfl--Al-tK~Elr~ 195 (255)
T COG1365 129 -NGRF-HPCGRCHSMIENAVMDKARELDIDVVAFGDLLSTGYG--------SVYREDGIFRLNLPAFL--AL-TKDELRS 195 (255)
T ss_pred -cCCC-CCcchHHHHHHHHHHHHHHhcCCeEEEEccccccccc--------ceeccCCEEEEccHHHH--hh-CcHHHHH
Confidence 5665 3555566788889999999999999999953321100 111111 11113 11 13 7999999
Q ss_pred HHHHCCCCCCCCCCCCCc
Q 011097 252 YAKKHNVPVPVTKKSIYS 269 (493)
Q Consensus 252 yA~~~GIp~~~t~~cpyS 269 (493)
.+..+|+.....-.||.-
T Consensus 196 il~~~~~e~~~kygCPll 213 (255)
T COG1365 196 ILKWNGYELEMKYGCPLL 213 (255)
T ss_pred HHHhcCccchhccCCchH
Confidence 999999976544466643
No 76
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=98.97 E-value=4.3e-09 Score=101.98 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=101.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++|++.+||||||+|+++++.+. +-++..+++|.|.. .+..+.++++++.+|+ ++.++-....+.. . ...
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~-~~~~~v~f~DTg~efpeT~efv~~~~~~~~l-~i~~~~~~~~~~~-~----~~~-- 84 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKI-SPDIPVIFLDTGYHFPETYELIDELTERYPL-NIKVYKPDLSLAE-Q----AAK-- 84 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHHHHHHHHhCC-ceEEECCchhHHH-H----HHh--
Confidence 36999999999999999999886 66788889999975 3567789999999998 6777644322221 1 111
Q ss_pred cccCc-cccc-ccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC--CCCeEEeccccCCCCCHHHHH
Q 011097 175 IYERK-YLLG-TSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN--PELNVVAPWREWDIQGREDAI 250 (493)
Q Consensus 175 ~y~g~-y~~~-~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~--p~i~ii~PLr~~~l~sKeEi~ 250 (493)
+... +... .-||+..+..-+.++.++.+...+.+|--... ...|......... +....+.|+.+| +.+|+.
T Consensus 85 -~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~E-s~~R~~~~~~~~~~~~~~~~v~PI~dW---t~~dVw 159 (212)
T TIGR00434 85 -YGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQ-GPSRANLSILNIDEKFGILKVLPLIDW---TWKDVY 159 (212)
T ss_pred -cCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEeccccc-CccccCCceeeecCCCCcEEEeehhhC---CHHHHH
Confidence 0000 1111 13566666677777777888778888853211 0122111111111 246779999998 799999
Q ss_pred HHHHHCCCCCC
Q 011097 251 EYAKKHNVPVP 261 (493)
Q Consensus 251 ~yA~~~GIp~~ 261 (493)
+|..++|||+.
T Consensus 160 ~Yi~~~~lp~n 170 (212)
T TIGR00434 160 QYIDAHNLPYN 170 (212)
T ss_pred HHHHHcCCCCC
Confidence 99999999974
No 77
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.92 E-value=1.3e-08 Score=99.17 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCc-ccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGI-KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~-ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
..+|.+.+|||+||++++.++++..+..+.++|++.+... .|.+.++++|+.+|+ +|+++++..+-..+.+...+...
T Consensus 17 ~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T PF00733_consen 17 DKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGL-EHHEIELDPEDLLDNLEDIIWRL 95 (255)
T ss_dssp TSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT--EEEEEEE-HHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhccccc-ccceeeechhhHHHhHHHHHHHH
Confidence 4799999999999999999999844889999999887642 389999999999999 89998887433222233333321
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
++ |..+..+-.+-...+.+.|++.|++++.+|+-+
T Consensus 96 ---~~--p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~Gg 130 (255)
T PF00733_consen 96 ---DG--PSPLDDPNSLPLYLLARLARENGIRVLLTGQGG 130 (255)
T ss_dssp ---T-----HHHHHHHHHHHHHHHHHCHTTBSEEE--TTH
T ss_pred ---hC--CcccccccccHHHHHHHhhcccceeEEEecccc
Confidence 11 111001112233456778888999999999743
No 78
>PRK13981 NAD synthetase; Provisional
Probab=98.91 E-value=1.2e-08 Score=112.17 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=100.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecC-CCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVG-QGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~G-q~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++++|++|||+||++++.++.+.+| .+|+++++... ....+++.++++|+.+|+ +++++|+.+.|. . ....+...
T Consensus 281 ~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi-~~~~i~i~~~~~-~-~~~~~~~~ 357 (540)
T PRK13981 281 PGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGV-RYDIIPIEPAFE-A-FEAALAPL 357 (540)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCC-eEEEEECHHHHH-H-HHHHhhhh
Confidence 6899999999999999999988777 47999998743 234678999999999999 899999987663 2 22222210
Q ss_pred ccccCcccccc--cCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC-CCCeEEeccccCCCCCHHHHH
Q 011097 174 AIYERKYLLGT--SMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN-PELNVVAPWREWDIQGREDAI 250 (493)
Q Consensus 174 a~y~g~y~~~~--~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~-p~i~ii~PLr~~~l~sKeEi~ 250 (493)
..+..+.-+ .+--.+|...+..+|...|+-++.||+- ++. ...+..+. ...--+.|+.+. +|.++.
T Consensus 358 --~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~----sE~--~~Gy~t~~GD~~~~~~pi~~l---~K~~v~ 426 (540)
T PRK13981 358 --FAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNK----SEM--AVGYATLYGDMAGGFAPIKDV---YKTLVY 426 (540)
T ss_pred --hcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCcc----CHH--HcCCeEecCCcccCccccCCC---CHHHHH
Confidence 001110000 1112456677899999999999999852 111 11111111 123457899875 799999
Q ss_pred HHHHHCC
Q 011097 251 EYAKKHN 257 (493)
Q Consensus 251 ~yA~~~G 257 (493)
++|+.+|
T Consensus 427 ~la~~~~ 433 (540)
T PRK13981 427 RLCRWRN 433 (540)
T ss_pred HHHHHHH
Confidence 9999887
No 79
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.90 E-value=9.9e-09 Score=100.87 Aligned_cols=150 Identities=21% Similarity=0.157 Sum_probs=102.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCC-cccHHHHHHHHHHcCCc-eEEEEcCcHHHHHhhhhhHHHh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQG-IKELDGLEEKAKASGAC-QLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~-~ed~e~a~~~A~~LGI~-~~~VvDl~eef~~~~i~~~i~~ 172 (493)
+++++++|||+||+|+++++.+. . -++-.|++|.|.. .+..+.+.++++.+|+. ++++.+-.... .+. ...
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~-~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~~~~-~~~----~~~ 99 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSI-SEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGCESE-ADF----EAK 99 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHh-hCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCchhH-HHH----HHh
Confidence 57999999999999999999886 4 6788899999985 46788999999999951 34333322211 111 000
Q ss_pred CccccCccc---ccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH--HHHHHHHhc--CCCCeEEeccccCCCCC
Q 011097 173 GAIYERKYL---LGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV--RFELTFFAL--NPELNVVAPWREWDIQG 245 (493)
Q Consensus 173 ~a~y~g~y~---~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~--r~~~~~~~l--~p~i~ii~PLr~~~l~s 245 (493)
.|..+ ..-.||+..+..-|.++.++++.+.+.+|-.. ||. |-....... .+..-.+.|+.+| +
T Consensus 100 ----~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr---~es~~Ra~~~~~~~d~~~~~~kv~Pi~~W---t 169 (226)
T TIGR02057 100 ----YGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRR---DQGSARANLPVIEIDEQNGILKVNPLIDW---T 169 (226)
T ss_pred ----cCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecch---hhCccccCCccccccCCCCeEEEeehhhC---C
Confidence 01100 01137787788888888888899999999632 221 111101111 2346678999999 7
Q ss_pred HHHHHHHHHHCCCCCC
Q 011097 246 REDAIEYAKKHNVPVP 261 (493)
Q Consensus 246 KeEi~~yA~~~GIp~~ 261 (493)
..|+..|..++|||+.
T Consensus 170 ~~dVw~Yi~~~~lP~n 185 (226)
T TIGR02057 170 FEQVYQYLDAHNVPYN 185 (226)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999999984
No 80
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.89 E-value=1.7e-08 Score=101.33 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=109.3
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
.+++++|||+||+|+++++.+. ..++..+++|.|.. .+.++.+.++++++|+ ++.+....+.+.+. ..
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~-~~~~~vif~DTg~~f~Et~~~~d~~~~~~~~-~l~~~~~~~~~~~~---------~~ 109 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKA-FPDFPVIFLDTGYHFPETYEFRDRLAEEYGL-DLKVYRPDDEVAEG---------EK 109 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHh-cCCCcEEEEeCCCcCHHHHHHHHHHHHHcCC-eEEEecCccchhhh---------hh
Confidence 4999999999999999999887 66688899999985 4678999999999998 78888776666543 01
Q ss_pred ccCcccccc--c-CcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHH---HHH--HhcCCCCeEEeccccCCCCCHH
Q 011097 176 YERKYLLGT--S-MARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFE---LTF--FALNPELNVVAPWREWDIQGRE 247 (493)
Q Consensus 176 y~g~y~~~~--~-~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~---~~~--~~l~p~i~ii~PLr~~~l~sKe 247 (493)
|-+.+..+. . ||...+..-|.++-++.+.+++.+|--- ||..-. ..+ ....+....+.|+.+| |..
T Consensus 110 ~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rr---des~~Rak~~~~~~~~~~~~~~rv~Pl~~W---t~~ 183 (261)
T COG0175 110 YGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRR---DESPTRAKLPVVSFDSEFGESIRVNPLADW---TEL 183 (261)
T ss_pred cccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccc---ccccccccCceeccccCcCCeEEEcchhcC---CHH
Confidence 112222222 2 6777777888888899988999999632 332111 001 1112246789999999 799
Q ss_pred HHHHHHHHCCCCCC
Q 011097 248 DAIEYAKKHNVPVP 261 (493)
Q Consensus 248 Ei~~yA~~~GIp~~ 261 (493)
||..|...++||+.
T Consensus 184 dVw~Yi~~~~lp~n 197 (261)
T COG0175 184 DVWLYILANNLPYN 197 (261)
T ss_pred HHHHHHHHhCCCCC
Confidence 99999999999985
No 81
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=98.84 E-value=3.7e-08 Score=95.45 Aligned_cols=151 Identities=23% Similarity=0.238 Sum_probs=104.0
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-------IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
+|+++.+||||||+.+++++.++ |++|.++..-.... -...+.++..|+.+|+ |+...+.+.+..++ +
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~-G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi-~l~~~~~~g~~e~e-v-- 75 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEE-GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGI-PLVTFDTSGEEERE-V-- 75 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHc-CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCC-ceEEEecCccchhh-H--
Confidence 37899999999999999999997 99999876644322 1578899999999999 77777665322111 1
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHH
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGRED 248 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeE 248 (493)
..+.+.-+.++++.|.+|.-...+...|.+.....+ .++.++||=.. +.++
T Consensus 76 ------------------------e~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~l--Gl~~~~PLWg~---d~~e 126 (223)
T COG2102 76 ------------------------EELKEALRRLKVDGIVAGAIASEYQKERVERLCEEL--GLKVYAPLWGR---DPEE 126 (223)
T ss_pred ------------------------HHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHh--CCEEeecccCC---CHHH
Confidence 234455566679999999876543334555555544 38899996433 4777
Q ss_pred HHHHHHHCCCCCCCCCCCCCcccCcccccccc
Q 011097 249 AIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHE 280 (493)
Q Consensus 249 i~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~e 280 (493)
+.+--.+.|+.+....-..+--+..++|+++.
T Consensus 127 ll~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~ 158 (223)
T COG2102 127 LLEEMVEAGFEAIIVAVSAEGLDESWLGRRID 158 (223)
T ss_pred HHHHHHHcCCeEEEEEEeccCCChHHhCCccC
Confidence 77666777877654444446666666666654
No 82
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.79 E-value=7.7e-08 Score=103.84 Aligned_cols=110 Identities=20% Similarity=0.128 Sum_probs=79.6
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecC-CC-cccHHHHHHHHHHcCCceEEEEcCcH-HHHHhhhhhHH
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVG-QG-IKELDGLEEKAKASGACQLVVKDLKE-EFVKDYIFPCL 170 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~G-q~-~ed~e~a~~~A~~LGI~~~~VvDl~e-ef~~~~i~~~i 170 (493)
..+|.+.+|||+||++++.++.+..+ ..+.+++++.+ .. .+|...|+++|+.+|+ +|+++++.+ ++.+ .+...+
T Consensus 253 ~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~-~~~~i~~~~~~~~~-~~~~~v 330 (467)
T TIGR01536 253 DVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDESPYARKVADHLGT-EHHEVLFSVEEGLD-ALPEVI 330 (467)
T ss_pred CCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCChHHHHHHHHHHhCC-cCeEEECCHHHHHH-HHHHHH
Confidence 46899999999999999999887533 36889999886 33 3567799999999999 899999874 3433 234444
Q ss_pred HhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 171 RAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
... + .++..+..+....+.+.|++.|++++.||+.+
T Consensus 331 ~~~---~----~p~~~~~~~~~~~l~~~a~~~G~~vlltG~Ga 366 (467)
T TIGR01536 331 YHL---E----DPTTIRASIPLYLLSKLAREDGVKVVLSGEGA 366 (467)
T ss_pred Hhh---C----CCCCCchHHHHHHHHHHHHhcCCEEEEecCcc
Confidence 321 1 11222233444577889999999999999855
No 83
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=98.78 E-value=9.7e-08 Score=93.60 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=98.4
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhH
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-------IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPC 169 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~ 169 (493)
|+++.+||||||+.+++++.++ ++|+++..-.... .-..+.++..|+.+|+ |++.+...... ++
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algi-pl~~~~~~~~~-e~----- 72 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE--HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGI-PLIKLYTEGTE-ED----- 72 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh--CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCC-CeEEeecCCCc-cH-----
Confidence 6889999999999999999886 8888774432221 1367899999999999 77654322110 00
Q ss_pred HHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCCh-HHHHHHHHhcCCCCeEEeccccCCCCCHHH
Q 011097 170 LRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQ-VRFELTFFALNPELNVVAPWREWDIQGRED 248 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~-~r~~~~~~~l~p~i~ii~PLr~~~l~sKeE 248 (493)
| ...|.+..++.|++.|++|.-.. .+| .+.+.....+ .++.++||=.. +.++
T Consensus 73 ----------~-----------~e~l~~~l~~~gv~~vv~GdI~s-~~qr~~~e~v~~~l--gl~~~~PLW~~---~~~~ 125 (223)
T TIGR00290 73 ----------E-----------VEELKGILHTLDVEAVVFGAIYS-EYQKTRIERVCREL--GLKSFAPLWHR---DPEK 125 (223)
T ss_pred ----------H-----------HHHHHHHHHHcCCCEEEECCccc-HHHHHHHHHHHHhc--CCEEeccccCC---CHHH
Confidence 0 12344555666999999998654 233 3344444444 48999996433 5788
Q ss_pred HHHHHHHCCCCCCCCCCCCCcccCcccccccc
Q 011097 249 AIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHE 280 (493)
Q Consensus 249 i~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~e 280 (493)
+++-....|+....++-+.+.-+..++|+.+.
T Consensus 126 ll~e~i~~G~~aiIv~v~a~gL~~~~LGr~i~ 157 (223)
T TIGR00290 126 LMEEFVEEKFEARIIAVAAEGLDESWLGRRID 157 (223)
T ss_pred HHHHHHHcCCeEEEEEEecCCCChHHcCCccc
Confidence 88777789998765444445556666665554
No 84
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.77 E-value=1.2e-07 Score=95.25 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=94.5
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHcc---C-------CeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENY---G-------CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKD 164 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~---G-------~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~ 164 (493)
.++++|++|||+||++++.+..+.+ + ..++++.+-... ..+.+.++..|+.+|+.++.++|+.+.+. .
T Consensus 38 ~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~-~~~~~da~~la~~lgi~~~~~i~I~~~~~-~ 115 (268)
T PRK00768 38 LKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGV-QADEDDAQDALAFIQPDRVLTVNIKPAVD-A 115 (268)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCC-cCCHHHHHHHHHhcCCCeeEEEECHHHHH-H
Confidence 3689999999999999998765443 2 336666665443 25789999999999995599999975443 2
Q ss_pred hhhhHHHh-CccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc-CCCCeEEeccccCC
Q 011097 165 YIFPCLRA-GAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL-NPELNVVAPWREWD 242 (493)
Q Consensus 165 ~i~~~i~~-~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l-~p~i~ii~PLr~~~ 242 (493)
+. ..+.. +...+ ....+ .+.=.+|...+..+|...|+=++.||. . ++. ...+... +-..--+.|+.++
T Consensus 116 ~~-~~l~~~~~~~~-~~a~~-NiqARlRm~~Ly~~An~~~~lvlgT~N-~---sE~--~~Gy~TkyGD~~~d~~pi~~L- 185 (268)
T PRK00768 116 SV-AALEAAGIELS-DFVKG-NIKARERMIAQYAIAGATGGLVVGTDH-A---AEA--VTGFFTKFGDGGADILPLFGL- 185 (268)
T ss_pred HH-HHHhhcCCCch-hhHHH-HHHHHHHHHHHHHHHccCCCEEEcCCc-c---cHH--HhCceeccCCccccchhhcCC-
Confidence 21 11211 00000 00000 011135567788889988876666653 1 221 1111111 2224568899875
Q ss_pred CCCHHHHHHHHHHCCCC
Q 011097 243 IQGREDAIEYAKKHNVP 259 (493)
Q Consensus 243 l~sKeEi~~yA~~~GIp 259 (493)
+|.++++.|+..|+|
T Consensus 186 --~KteV~~La~~l~vP 200 (268)
T PRK00768 186 --NKRQGRALLAALGAP 200 (268)
T ss_pred --cHHHHHHHHHHhCCC
Confidence 799999999999998
No 85
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.77 E-value=3.6e-08 Score=103.10 Aligned_cols=164 Identities=24% Similarity=0.350 Sum_probs=106.4
Q ss_pred CCCCCCCEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhh--
Q 011097 90 GRRGKLNKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDY-- 165 (493)
Q Consensus 90 ~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~-- 165 (493)
+++. ..+|++++|||+||+|++.+|++.+| -.++|+++|-|.- ..+.+.+++--.+||| ++.++|..++|....
T Consensus 226 k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi-~i~v~~as~~f~s~L~~ 303 (552)
T KOG1622|consen 226 KWVG-DYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVYLGI-PITVVDASETFLSKLKG 303 (552)
T ss_pred HHhc-ccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccchhhhHHHHHHHHHHHcCC-ceEEeechHHHHHhhcc
Confidence 3444 37999999999999999999998878 6899999999973 4677888888888999 899999998887521
Q ss_pred -hhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCC------cEeeeCCCC---------CCCChH-HHH------
Q 011097 166 -IFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGA------DAVAHGCTG---------KGNDQV-RFE------ 222 (493)
Q Consensus 166 -i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Ga------d~IAtGhn~---------~gnD~~-r~~------ 222 (493)
.+|. +.|-+.| |.+ .+.+...|.++.+ .++|.|.-. .|.+-. +..
T Consensus 304 ~~dPE-------~KRkiIG----~tf-ikv~~~~~~~l~~k~~~~~~flaQgtL~Pd~ieS~s~~g~~~a~tIKThhn~~ 371 (552)
T KOG1622|consen 304 VTDPE-------EKRKIIG----RTF-IKVFDPVASELNKKHGEKESFLAQGTLRPDLIESASVYGSGHAETIKTHHNDT 371 (552)
T ss_pred cCCHH-------Hhceecc----cce-eeeCcHHHHHhhhccCccceeeecccccchhhhhccccCCchhhhhhcccccc
Confidence 1111 1112222 211 1233344444322 256666321 111100 000
Q ss_pred HHHHhcCCCCeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 223 LTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 223 ~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
-.++-+...-+++.||.++ -|+|++...+.+|+|....+.-|++.
T Consensus 372 ~L~r~lrklgK~ieplk~~---~kDEvr~lgk~lGlp~~Lv~rhPfpG 416 (552)
T KOG1622|consen 372 GLIRDLRKLGKVIEPLKDF---HKDEVRELGKDLGLPESLVPRHPFPG 416 (552)
T ss_pred hHHHHHHHhcccCchhHHH---HHHHHHHhhhhcCCchhhhccCCCCC
Confidence 0011111123889999986 49999999999999987666777773
No 86
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.76 E-value=1e-07 Score=95.76 Aligned_cols=171 Identities=16% Similarity=0.238 Sum_probs=110.3
Q ss_pred ChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccC-----CeEEEEEEecCC-CcccHHH
Q 011097 66 CEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYG-----CEVVCFTADVGQ-GIKELDG 139 (493)
Q Consensus 66 C~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G-----~eViavtid~Gq-~~ed~e~ 139 (493)
|-+.-++++.+++++ . .-+++||++|||.||++++.+..+.+| ..|.|+.+..+- ...+.++
T Consensus 8 ~~~~~~~fl~~~l~~----~--------~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~d 75 (268)
T COG0171 8 EINRLVDFLRDYLKK----A--------GFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEED 75 (268)
T ss_pred HHHHHHHHHHHHHHH----c--------CCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHH
Confidence 334456677777533 1 125799999999999999998887765 349999999884 5578999
Q ss_pred HHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc-ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCCh
Q 011097 140 LEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI-YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQ 218 (493)
Q Consensus 140 a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~-y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~ 218 (493)
|...|+.+|+ ...++++++.+- .+.......... +...+..+ .+.-.+|..++..+|.+.|.=++-||+- ++
T Consensus 76 a~~~~~~lg~-~~~~i~I~~~v~-~~~~~~~~~~~~~~~~~~~~~-NikaR~Rm~~lY~~An~~~~lVlGTgn~----sE 148 (268)
T COG0171 76 AQDLAEALGI-DYKEINIKPAVD-AFLKKLLKLFLGIYLEDLALG-NIKARLRMVILYAIANKLGGLVLGTGNK----SE 148 (268)
T ss_pred HHHHHHHhCC-ceEEEecHHHHH-HHHHhhhhhhcccchhhHHHh-hhhHHHHHHHHHHHHhhcCCEEEcCCcH----HH
Confidence 9999999999 688999975443 111111111000 00000011 1112356778889999999888888752 11
Q ss_pred HHHHHHHHhc-CCCCeEEeccccCCCCCHHHHHHHHHHCCCCC
Q 011097 219 VRFELTFFAL-NPELNVVAPWREWDIQGREDAIEYAKKHNVPV 260 (493)
Q Consensus 219 ~r~~~~~~~l-~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~ 260 (493)
. -+.+... +-..-=+.|+.+. +|.++.++|+..|+|-
T Consensus 149 ~--~~Gy~TkyGDg~~d~~Pi~~L---~KtqV~~La~~l~ipe 186 (268)
T COG0171 149 L--ALGYFTKYGDGAVDINPIADL---YKTQVYALARHLGIPE 186 (268)
T ss_pred H--hcCceecccCcccChhhhcCC---cHHHHHHHHHHcCCCH
Confidence 1 1111111 1123447888875 6999999999999984
No 87
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=98.55 E-value=1.7e-07 Score=91.61 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=82.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEE-e-cCCC-----cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTA-D-VGQG-----IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavti-d-~Gq~-----~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
+|+++.+||||||+.+++.+.++ ++|.++.- . .+.. .-..+.++..|+.+|+ |++.+..+..
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algi-pl~~~~~~g~-------- 69 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ--HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGI-PLIEIPTSGD-------- 69 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT---EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT---EEEEEE-----------
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh--CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCC-CEEEEEccCc--------
Confidence 48999999999999999999886 88876643 2 2211 2346788999999999 8888876411
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCCh-HHHHHHHHhcCCCCeEEeccccCCCCCHH
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQ-VRFELTFFALNPELNVVAPWREWDIQGRE 247 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~-~r~~~~~~~l~p~i~ii~PLr~~~l~sKe 247 (493)
+..|. ..+.+..++.+++.|++|.-.. ++| .+.+.....+ .++.++||=.. +++
T Consensus 70 --------~~~~~-----------~~l~~~l~~~~v~~vv~GdI~~-~~~r~~~e~vc~~l--Gl~~~~PLW~~---d~~ 124 (218)
T PF01902_consen 70 --------EEDYV-----------EDLKEALKELKVEAVVFGDIDS-EYQRNWVERVCERL--GLEAVFPLWGR---DRE 124 (218)
T ss_dssp --------CCCHH-----------HHHHHHHCTC--SEEE--TTS--HHHHHHHHHHHHHC--T-EEE-TTTT-----HH
T ss_pred --------cchhh-----------HHHHHHHHHcCCCEEEECcCCc-HHHHHHHHHHHHHc--CCEEEecccCC---CHH
Confidence 00010 1234444667899999998653 233 2344545545 48999997432 577
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcccCcccccccc
Q 011097 248 DAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHE 280 (493)
Q Consensus 248 Ei~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~e 280 (493)
++..-..+.|+....+.-..+--+..++|+.+.
T Consensus 125 ~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~ 157 (218)
T PF01902_consen 125 ELLREFIESGFEAIIVKVDADGLDESFLGRELD 157 (218)
T ss_dssp HHHHHHHHTT-EEEEEEEESTT--GGGTT-B--
T ss_pred HHHHHHHHCCCeEEEEEEeccCCChHHCCCCcc
Confidence 887777778988655433445556666676664
No 88
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.6e-06 Score=88.74 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=112.7
Q ss_pred ccChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHH---Hcc-------CCeEE-EEEEecCC
Q 011097 64 RACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLR---ENY-------GCEVV-CFTADVGQ 132 (493)
Q Consensus 64 ~lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~---e~~-------G~eVi-avtid~Gq 132 (493)
++|.+||+++|+.|.|+ .- +...+.|..+.+.+++++|||.-|+|+|+.+. +++ ++.|. .+++-.+-
T Consensus 33 ~~C~eCFv~~v~~KfR~-ql-a~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k~~~~~~~~tv~v~~~~~~~~ 110 (396)
T KOG2594|consen 33 AFCDECFVNNVRNKFRL-QL-AVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLKNKRLRRDFTVLVLVVFQEFT 110 (396)
T ss_pred hHHHHHHHHHHHHHHHH-Hh-hcchhhcCCcccceEEEecCCcchHhHHHHHHHHHHHhhhhhcCcCCceEEEEEEEecc
Confidence 79999999999999764 11 33444677777899999999999999999876 111 44443 33333322
Q ss_pred Cc-ccHHHHHHHHHHcCCc-eEEE--EcCcHHHHHhh-hhhHHHhCccc---cCcc--cccccC------cHHHHHHHHH
Q 011097 133 GI-KELDGLEEKAKASGAC-QLVV--KDLKEEFVKDY-IFPCLRAGAIY---ERKY--LLGTSM------ARPVIAKAMV 196 (493)
Q Consensus 133 ~~-ed~e~a~~~A~~LGI~-~~~V--vDl~eef~~~~-i~~~i~~~a~y---~g~y--~~~~~~------~R~l~~~~l~ 196 (493)
.. ..++.+++.-.+.=.. .+.| ++.. ++.+++ ..+.+.+|... .... +++.+. -+.++-+.+.
T Consensus 111 ~~~~v~e~lq~l~~~~~~~~~~~V~~la~~-~~~~~~~~~~~~~~n~El~ak~~kl~~~~sv~~~srqDLl~~lk~kll~ 189 (396)
T KOG2594|consen 111 DSTAVFEALQELIIDNIEWVRYVVSCLAPP-EKDNHVVPVESINGNDELIAKDRKLKLSDSVPDDSRQDLLLHLKMKLLQ 189 (396)
T ss_pred chHHHHHHHHHHHHhhccccceEEEecCch-HhhcCcccccccCCCceeecchhhcccccccccchHHHHHHHHHHHHHH
Confidence 11 2345555544432111 2333 2332 332221 12222222110 0111 223222 2346678899
Q ss_pred HHHHHcCCcEeeeCCCCCCCChHHHHHH--HHh-------------cCC--CCeEEeccccCCCCCHHHHHHHHHHCCCC
Q 011097 197 DVAREVGADAVAHGCTGKGNDQVRFELT--FFA-------------LNP--ELNVVAPWREWDIQGREDAIEYAKKHNVP 259 (493)
Q Consensus 197 ~~A~e~Gad~IAtGhn~~gnD~~r~~~~--~~~-------------l~p--~i~ii~PLr~~~l~sKeEi~~yA~~~GIp 259 (493)
.+|.+.|++.|.-|+... |..+.-.. .++ ..| +++.+.||+|. .+.|+..|....|++
T Consensus 190 ~vA~~~g~~~i~~g~~~t--~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~llrPLrDl---~~~Ei~~y~~l~~l~ 264 (396)
T KOG2594|consen 190 KVAAENGYNRIVLGDSTT--DLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVKLLRPLRDL---LSLEITSYCLLDGLA 264 (396)
T ss_pred HHHHHcCCCEEEecCchh--HHHHHHHHHHHhccCccceehhhhhccccCCCceeehhHHHH---HHHHHHHHHHhhcCC
Confidence 999999999999998653 44432111 111 123 38999999986 699999999999998
Q ss_pred CC
Q 011097 260 VP 261 (493)
Q Consensus 260 ~~ 261 (493)
+.
T Consensus 265 ~~ 266 (396)
T KOG2594|consen 265 YY 266 (396)
T ss_pred ch
Confidence 53
No 89
>PRK06850 hypothetical protein; Provisional
Probab=98.53 E-value=1.2e-06 Score=95.00 Aligned_cols=151 Identities=20% Similarity=0.300 Sum_probs=96.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC--------CeEEEEEEecCCCc--------ccHHHHHHHHHHcCCceEEEE----
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG--------CEVVCFTADVGQGI--------KELDGLEEKAKASGACQLVVK---- 155 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G--------~eViavtid~Gq~~--------ed~e~a~~~A~~LGI~~~~Vv---- 155 (493)
..++|+|||||||++++.++.+.+. -.|+.++.|.|... ..++.+++.|++.|+ |+.+.
T Consensus 35 ~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~gl-pi~~~~v~P 113 (507)
T PRK06850 35 RPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGL-PITPHKLTP 113 (507)
T ss_pred CCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCC-ceEEEeeCC
Confidence 4689999999999999988865421 25888899999852 344667778899998 66542
Q ss_pred cCcHHHHHhhhhhHHHhCccccCcccccc----cCcHHHHHHHHHHH----HHHcCCcEeeeCCCCCCCChHHHHHHH--
Q 011097 156 DLKEEFVKDYIFPCLRAGAIYERKYLLGT----SMARPVIAKAMVDV----AREVGADAVAHGCTGKGNDQVRFELTF-- 225 (493)
Q Consensus 156 Dl~eef~~~~i~~~i~~~a~y~g~y~~~~----~~~R~l~~~~l~~~----A~e~Gad~IAtGhn~~gnD~~r~~~~~-- 225 (493)
++.+.|+..++ . ..||.+. -|+..++..-+.++ .++.|-..+.+|-... -...|...+-
T Consensus 114 ~~~~sFwv~li----G------rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~-ES~~RA~~m~~~ 182 (507)
T PRK06850 114 KINDTFWVNLI----G------KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKA-ESAARAQVMAKH 182 (507)
T ss_pred CcchhHHHHHh----c------CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeecc-ccHHHHhhhhhh
Confidence 34567775432 1 1244333 25656665444443 3455767788885321 1122222110
Q ss_pred ----H-----hcCCCCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 226 ----F-----ALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 226 ----~-----~l~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
. ...|...++.|+.+| +-+||..|...++.|+.
T Consensus 183 ~~~~~rl~~~~~~~~~~v~~PI~dW---s~dDVW~YL~~~~~P~g 224 (507)
T PRK06850 183 EIEGSRLSRHTTLPNAFVYTPIEDW---SNDDVWKYLLQWENPWG 224 (507)
T ss_pred cccCcceeeccCCCCcEEEeChHhC---CHHHHHHHHHhcCCCCC
Confidence 0 012345689999999 79999999999988873
No 90
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.48 E-value=2.8e-06 Score=91.08 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=95.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHcc-C-------CeEEEEEEecCCCc--------ccHHHHHHHHHHcCCceEEEE----
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENY-G-------CEVVCFTADVGQGI--------KELDGLEEKAKASGACQLVVK---- 155 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~-G-------~eViavtid~Gq~~--------ed~e~a~~~A~~LGI~~~~Vv---- 155 (493)
..++|+|||||||+|++.+..+.+ + -.|..++.|.|..- +.++.+++.|++.|+ |+.+.
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~l-pi~~~~v~P 92 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGL-PIEPHRLTP 92 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 458999999999999998876542 1 25788888999742 344567778899887 56543
Q ss_pred cCcHHHHHhhhhhHHHhCccccCcccccc----cCcHHHHHHHH----HHHHHHcCCcEeeeCCCCCCCChHHHHHHH--
Q 011097 156 DLKEEFVKDYIFPCLRAGAIYERKYLLGT----SMARPVIAKAM----VDVAREVGADAVAHGCTGKGNDQVRFELTF-- 225 (493)
Q Consensus 156 Dl~eef~~~~i~~~i~~~a~y~g~y~~~~----~~~R~l~~~~l----~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~-- 225 (493)
++.+.|+..++ . ..||.+. -|+..++..-+ .++.++.|..++.+|.... -...|-..+-
T Consensus 93 ~~~~~Fwv~li----G------rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~-ES~~RA~~m~k~ 161 (447)
T TIGR03183 93 EIKDTFWVNLI----G------KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKA-ESQARAAVMEKH 161 (447)
T ss_pred CcchHHHHHHh----c------CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehh-hHHHHHhhhhhh
Confidence 33456765432 1 1233332 26666665444 4444456777888885321 1111211100
Q ss_pred -----------HhcCCCCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 226 -----------FALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 226 -----------~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
....|...++.|+.+| +-+||..|...++.|+.
T Consensus 162 e~~~~r~~l~~~~~~~~~~v~~PI~dW---s~~DVW~yL~~~~~P~g 205 (447)
T TIGR03183 162 ESGSLRDRLSRNSSLPNSWVYSPIEDW---SNDDVWMYLLQVPNPWG 205 (447)
T ss_pred ccccccccccccCCCCCcEEEEChHhC---CHHHHHHHHHhcCCCCC
Confidence 0012346789999999 79999999999988874
No 91
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.36 E-value=1.2e-06 Score=72.37 Aligned_cols=57 Identities=32% Similarity=0.479 Sum_probs=48.5
Q ss_pred EEEEEcCChHHHHHHHHHHHc--cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 98 VVLAYSGGLDTSVIVPWLREN--YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 98 VvVA~SGG~DSsvll~~L~e~--~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
|+|++|||+||+++++++++. .+.+++++++|
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV---------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH----------------------------------------------
Confidence 689999999999999999774 36788888887
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK 214 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~ 214 (493)
.+++.+.+.|++.|++.|++|||++
T Consensus 35 --------------~~~~~~~~~a~~~~~~~Iv~G~~~~ 59 (86)
T cd01984 35 --------------AFVRILKRLAAEEGADVIILGHNAD 59 (86)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCch
Confidence 2335678899999999999999876
No 92
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=98.31 E-value=5.9e-06 Score=91.81 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=71.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-----------CeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc-HHHHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-----------CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK-EEFVK 163 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-----------~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~-eef~~ 163 (493)
..|.+.+|||+|||+++.++++..+ ..+.++++.+. ...|+..|+++|+.+|. +|+.+.+. +++.+
T Consensus 238 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D~~~Ar~vA~~lg~-~h~~i~~~~~e~~~ 315 (586)
T PTZ00077 238 VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPDLKAARKVAEYLGT-EHHEFTFTVEEGID 315 (586)
T ss_pred CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCchHHHHHHHHHHhCC-cCcEEEECHHHHHH
Confidence 5899999999999999999877422 35777776542 13789999999999999 78887665 34433
Q ss_pred hhhhhHHHhCccccCcccccccCcHH-HHHHHHHHHHHHcCCcEeeeCC
Q 011097 164 DYIFPCLRAGAIYERKYLLGTSMARP-VIAKAMVDVAREVGADAVAHGC 211 (493)
Q Consensus 164 ~~i~~~i~~~a~y~g~y~~~~~~~R~-l~~~~l~~~A~e~Gad~IAtGh 211 (493)
.+...+..... +...+ .|. +-...+.+.|++.|+.+|.+|.
T Consensus 316 -~l~~~i~~le~----~~~~~--~~~~~p~yll~r~a~~~gvkVvLsGe 357 (586)
T PTZ00077 316 -ALPDVIYHTET----YDVTT--IRASTPMYLLSRRIKALGIKMVLSGE 357 (586)
T ss_pred -HHHHHHHHhcC----CCCCC--cchHHHHHHHHHHHHhcCCeEEEecC
Confidence 23344432111 10011 111 1234677788899999999996
No 93
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=98.29 E-value=8.7e-06 Score=90.00 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=74.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-------------CeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc-HHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-------------CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK-EEF 161 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-------------~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~-eef 161 (493)
..|.+.+|||+||++++.++++..+ ..+.++++.+.. ..|++.|+++|+.+|. +|+.+.+. +++
T Consensus 228 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D~~~A~~vA~~lg~-~h~~v~~t~~e~ 305 (554)
T PRK09431 228 VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPDLKAAREVADHLGT-VHHEIHFTVQEG 305 (554)
T ss_pred CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CChHHHHHHHHHHhCC-ccEEEEeCHHHH
Confidence 5899999999999999999877522 246777775543 3689999999999999 78888876 444
Q ss_pred HHhhhhhHHHhCccccCcccccccCcHH-HHHHHHHHHHHHcCCcEeeeCCCCCCCChH
Q 011097 162 VKDYIFPCLRAGAIYERKYLLGTSMARP-VIAKAMVDVAREVGADAVAHGCTGKGNDQV 219 (493)
Q Consensus 162 ~~~~i~~~i~~~a~y~g~y~~~~~~~R~-l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~ 219 (493)
.+ .+...+..-..| .+.. .|. +-...+.+.|+..|+.++.+|. |.|+.
T Consensus 306 ~~-~l~~vi~~le~~-----dp~~-~~~~~p~yll~~~~~~~gvkvvLsGe---GaDEl 354 (554)
T PRK09431 306 LD-ALRDVIYHLETY-----DVTT-IRASTPMYLMARKIKAMGIKMVLSGE---GADEL 354 (554)
T ss_pred HH-HHHHHHHHHhcc-----CCcc-chhHHHHHHHHHHHHHcCCEEEEecC---chhhh
Confidence 43 244444321111 1111 111 1123566777778999999996 44554
No 94
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.25 E-value=7.8e-06 Score=90.69 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=70.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC---------CeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCc-HHHHHh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG---------CEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLK-EEFVKD 164 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G---------~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~-eef~~~ 164 (493)
..|.+++|||+||++++.++++..+ ..+.++++ |.. ..|++.|+++|+.+|. +|+.+.+. +++.+
T Consensus 226 vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~Ar~vA~~lg~-~h~ev~~~~~e~~~- 301 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCV--GLEGSPDLKAAREVADYLGT-VHHEFHFTVQEGID- 301 (578)
T ss_pred CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEec--CCCCCCHHHHHHHHHHHhCC-CCeEEEEChHHHHH-
Confidence 5799999999999999998876421 35665554 443 3789999999999999 78887775 34433
Q ss_pred hhhhHHHhCccccCcccccccCcHH-HHHHHHHHHHHHcCCcEeeeCCC
Q 011097 165 YIFPCLRAGAIYERKYLLGTSMARP-VIAKAMVDVAREVGADAVAHGCT 212 (493)
Q Consensus 165 ~i~~~i~~~a~y~g~y~~~~~~~R~-l~~~~l~~~A~e~Gad~IAtGhn 212 (493)
.+...+..- ..| .+.. .|. +-...+.+.|++.|+.+|.+|..
T Consensus 302 ~l~~~i~~l----e~~-dp~~-~~~s~p~yll~r~a~~~gvkVvLsGeG 344 (578)
T PLN02549 302 AIEDVIYHL----ETY-DVTT-IRASTPMFLMSRKIKSLGVKMVLSGEG 344 (578)
T ss_pred HHHHHHHHh----cCC-CCcc-chhHHHHHHHHHHHHhcCCEEEEecCc
Confidence 233333321 111 1111 121 22345677889999999999964
No 95
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=98.13 E-value=2.7e-05 Score=86.70 Aligned_cols=107 Identities=17% Similarity=0.077 Sum_probs=70.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC----cccHHHHHHHHHHcCCceEEEEcCc-HHHHHhhhhhH
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG----IKELDGLEEKAKASGACQLVVKDLK-EEFVKDYIFPC 169 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~----~ed~e~a~~~A~~LGI~~~~VvDl~-eef~~~~i~~~ 169 (493)
...|.+.+|||+||++++.++++..+-.+.++|+.+... .+|.+.|+++|+.+|. +|+.+.+. +++.+. +...
T Consensus 260 d~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~-~h~~i~~~~~~~~~~-l~~~ 337 (589)
T TIGR03104 260 DVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHT-RHHKIRIPNHRVLPA-LPEA 337 (589)
T ss_pred CCceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChHHHHHHHHHHhCC-cCeEEEcCHHHHHHH-HHHH
Confidence 368999999999999999988875223577888765321 3689999999999999 78887775 445432 4444
Q ss_pred HHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCC
Q 011097 170 LRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGC 211 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGh 211 (493)
+... +. |...+.+ +-...+.+.|++ +++++.+|.
T Consensus 338 v~~~---~~--P~~~~~~--~~~~~l~~~a~~-~~kV~LsGe 371 (589)
T TIGR03104 338 VAAM---SE--PMVSHDC--VAFYLLSEEVSK-HVKVVQSGQ 371 (589)
T ss_pred HHHh---CC--CCCCchH--HHHHHHHHHHhC-CCeEEeecC
Confidence 4431 11 2222111 112245555655 799999996
No 96
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.12 E-value=2e-05 Score=88.27 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=71.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
..|.+.+|||+||++++.++.+..+..+.++++..... .+|...|+++|+.+|. +|+++.+..+..+. +...+..
T Consensus 259 ~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~~~A~~vA~~~g~-~h~~~~~~~~~~~~-~~~~~~~-- 334 (628)
T TIGR03108 259 VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDESAYARQVAERYGT-NHRVETVDPDDFSL-VDRLAGL-- 334 (628)
T ss_pred CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChHHHHHHHHHHhCC-CCeEEecCHHHHHH-HHHHHHH--
Confidence 57999999999999999988775345677888776432 3788999999999999 79998887544322 3333332
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
++. |.+.+. .+-...+.+.|++ |+.++.+|.-+
T Consensus 335 -~~~--P~~~~~--~~~~~~~~~~a~~-~~kV~LsG~Gg 367 (628)
T TIGR03108 335 -YDE--PFADSS--ALPTYRVCELARK-RVTVALSGDGG 367 (628)
T ss_pred -hCC--CCCCch--HHHHHHHHHHHHC-CCCEEEeccch
Confidence 111 121110 1112344555655 79999999643
No 97
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.95 E-value=7.5e-05 Score=82.44 Aligned_cols=107 Identities=24% Similarity=0.194 Sum_probs=74.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEE-EEEecCCC-cccHHHHHHHHHHcCCceEEEEcCc-HHHHHhhhhhHHHh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVC-FTADVGQG-IKELDGLEEKAKASGACQLVVKDLK-EEFVKDYIFPCLRA 172 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eVia-vtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~-eef~~~~i~~~i~~ 172 (493)
..|.+.+|||+|||+++.++.+........ +++.+... ..|.+.+++.|+.||. +|+.+-+. +++.+. +...+..
T Consensus 231 vpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D~~~a~~~A~~lg~-~h~~~~~~~~e~~~~-~~~vv~~ 308 (542)
T COG0367 231 VPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDAKYARAVAKFLGT-PHHEIILTNEELLNA-LPEVVKA 308 (542)
T ss_pred CcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCchHHHHHHHHHHhCC-CcEEEeecHHHHHHH-HHHHHhh
Confidence 579999999999999999998874444443 67777654 2599999999999999 78887665 455433 4444433
Q ss_pred CccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCC
Q 011097 173 GAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGC 211 (493)
Q Consensus 173 ~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGh 211 (493)
-. +|.+.+. .+-.-.+.+.|++.|..++.+|.
T Consensus 309 ~~-----~p~~~~~--~~ply~~~~~a~~~g~kVvLSGe 340 (542)
T COG0367 309 LD-----TPGGMAA--SIPLYLLSRKARAEGEKVVLSGE 340 (542)
T ss_pred cC-----CCCcccc--hhHHHHHHHhhhhcCcEEeecCc
Confidence 11 1222111 12234677889999999999995
No 98
>PLN02309 5'-adenylylsulfate reductase
Probab=97.92 E-value=0.00012 Score=79.08 Aligned_cols=159 Identities=17% Similarity=0.239 Sum_probs=97.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEE--cCc--HHHHHhhhhhHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVK--DLK--EEFVKDYIFPCL 170 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~Vv--Dl~--eef~~~~i~~~i 170 (493)
++|++++|||.|+ |+++++.+. +-++-.|++|.|.. .+.++.+.++++++|+ +++++ |.. ++|....-.
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~-~~~ipV~flDTG~lfpETy~~~d~v~~~ygl-~i~~~~P~~~~~~~~~~~~g~--- 184 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLT-GRPFRVFSLDTGRLNPETYRLFDAVEKHYGI-RIEYMFPDAVEVQALVRNKGL--- 184 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHh-CCCCcEEEecCCCCCHHHHHHHHHHHHHhCC-ceEEECCCcchHHHHHHhcCc---
Confidence 5799999988887 566777775 77777889999984 4788999999999999 77776 221 122111000
Q ss_pred HhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCC----------CCeEEecccc
Q 011097 171 RAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNP----------ELNVVAPWRE 240 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p----------~i~ii~PLr~ 240 (493)
...|+. ....||+..+..=|.+..++ .++..||--.....-.|-+.-+....+ .+-.+.||.+
T Consensus 185 --~~~~~~---~~~~Cc~irKVePL~raL~~--~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~lKvnPl~~ 257 (457)
T PLN02309 185 --FSFYED---GHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLVKWNPLAN 257 (457)
T ss_pred --cccccC---ChHHhhhhHhHHHHHHHHhh--CCEEEEeeccccCccccccCCeeeecccccccccCCCCeeEEccccc
Confidence 000110 11136776666666555554 468999953211110122211111121 1446889999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 241 WDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 241 ~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
| |.+|+..|.++++||+..=...-|..
T Consensus 258 W---t~~dVw~Yi~~~~lP~npL~~~GY~S 284 (457)
T PLN02309 258 V---TGNEVWNFLRTMDVPVNSLHAQGYVS 284 (457)
T ss_pred C---CHHHHHHHHHHcCCCCCcchhcCCCC
Confidence 9 79999999999999985322333444
No 99
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.88 E-value=0.00015 Score=78.33 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=95.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++++++.|||.|| |+++++.+. +-++-.|++|.|.. .+.++.+.++++++|+ +++++--...-.++ +...
T Consensus 116 ~~iavasSG~eds-vLlhl~~~~-~~~ipV~flDTG~lFpETy~~~d~v~~~ygl-~l~~~~p~~~~~~~----~~~~-- 186 (463)
T TIGR00424 116 NDIAIAFSGAEDV-ALIEYAHLT-GRPFRVFSLDTGRLNPETYRFFDAVEKQYGI-RIEYMFPDAVEVQA----LVRS-- 186 (463)
T ss_pred CCEEEEeccHHHH-HHHHHHHHh-CCCCcEEEecCCCCCHHHHHHHHHHHHHhCC-ceEEECCCcchHHH----HHHh--
Confidence 4799999999887 567888775 77788899999984 4788999999999999 77766221100111 1111
Q ss_pred cccCc---cc-ccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC----------CCCeEEecccc
Q 011097 175 IYERK---YL-LGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN----------PELNVVAPWRE 240 (493)
Q Consensus 175 ~y~g~---y~-~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~----------p~i~ii~PLr~ 240 (493)
.|. |. ....||+..+..-|.+.... .++..||--..+..-.|-+.-+.... +.+-.+.||.+
T Consensus 187 --~G~~~~~~~~~~~CC~irKVePL~raL~~--~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~~~~~~~~iKvnPLa~ 262 (463)
T TIGR00424 187 --KGLFSFYEDGHQECCRVRKVRPLRRALKG--LKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVAN 262 (463)
T ss_pred --cCcccCCcCChHHHhhHHhHHHHHHHHHh--CCcEEeeeccccCccccccCCcccccccccccccCCCceEEEeeccc
Confidence 111 00 11246777666666666654 46799995321110012111111111 12457889999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCC
Q 011097 241 WDIQGREDAIEYAKKHNVPVPV 262 (493)
Q Consensus 241 ~~l~sKeEi~~yA~~~GIp~~~ 262 (493)
| |.+|+..|..+++||+..
T Consensus 263 W---t~~dVw~Yi~~~~LP~np 281 (463)
T TIGR00424 263 V---EGKDVWNFLRTMDVPVNT 281 (463)
T ss_pred C---CHHHHHHHHHHcCCCCCc
Confidence 9 799999999999999853
No 100
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=97.78 E-value=0.00019 Score=68.82 Aligned_cols=142 Identities=14% Similarity=0.214 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcH-HHHHhhhhhHHHhCccccCcccc
Q 011097 105 GLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKE-EFVKDYIFPCLRAGAIYERKYLL 182 (493)
Q Consensus 105 G~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~e-ef~~~~i~~~i~~~a~y~g~y~~ 182 (493)
|.||+|+++++.+. .-++.++++|.|.. .+..+.+.++++++|+ +++++.-.. .+.+. ...... ..+..
T Consensus 2 ~~~s~Vll~L~~~~-~~~~~vifvDTg~~FpET~~~~d~~~~~~~l-~i~~~~~~~~~~~~~-----~~~~G~--~~~~~ 72 (191)
T TIGR02055 2 GAEDVVLVDLAAKV-RPDVKVFFLDTGRLFKETYETIDQVRERYDI-LIDVLSPPPLTVEEQ-----VKEYGL--NLFYR 72 (191)
T ss_pred ChHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHHHHHHHHhCC-ceEEEcCCcccHHHH-----HHHcCc--ccccc
Confidence 78999999999986 66788899999985 4678899999999999 777774321 12110 111000 00001
Q ss_pred --cccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCC--CCeEEeccccCCCCCHHHHHHHHHHCCC
Q 011097 183 --GTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNP--ELNVVAPWREWDIQGREDAIEYAKKHNV 258 (493)
Q Consensus 183 --~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p--~i~ii~PLr~~~l~sKeEi~~yA~~~GI 258 (493)
..-||+..+..-|.++.++ .+++.+|-...... .|....+....+ ..-.+.|+.+| +..|+..|..++||
T Consensus 73 ~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~-~R~~~~~~~~~~~~~~~~~~Pi~~W---t~~dVw~Yi~~~~l 146 (191)
T TIGR02055 73 SVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSP-TRAQAPFLEIDEAFGLVKINPLADW---TSEDVWEYIADNEL 146 (191)
T ss_pred cchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCc-hhcCCceeeecCCCCeEEEEecccC---CHHHHHHHHHHcCC
Confidence 1235677777667776654 56788886432111 121111111121 24468899999 79999999999999
Q ss_pred CCC
Q 011097 259 PVP 261 (493)
Q Consensus 259 p~~ 261 (493)
|+.
T Consensus 147 p~n 149 (191)
T TIGR02055 147 PYN 149 (191)
T ss_pred CCC
Confidence 985
No 101
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.74 E-value=0.00026 Score=80.49 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=47.4
Q ss_pred CCEEEEEEcCChHHHHHHHHH-------HHcc--CCe----------------------------EEEEEEe-cCCCccc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWL-------RENY--GCE----------------------------VVCFTAD-VGQGIKE 136 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L-------~e~~--G~e----------------------------Viavtid-~Gq~~ed 136 (493)
.++++|++|||+||++++.+. .+.+ |.+ ++++++- .+-..++
T Consensus 348 ~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~~~ss~~t 427 (700)
T PLN02339 348 ASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEET 427 (700)
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCCCCCCHHH
Confidence 378999999999999866553 2323 221 4666654 2223468
Q ss_pred HHHHHHHHHHcCCceEEEEcCcHH
Q 011097 137 LDGLEEKAKASGACQLVVKDLKEE 160 (493)
Q Consensus 137 ~e~a~~~A~~LGI~~~~VvDl~ee 160 (493)
.+.|+++|+.+|+ .|+.+++++.
T Consensus 428 ~~~A~~la~~lG~-~~~~i~I~~~ 450 (700)
T PLN02339 428 RSRAKQLADEIGS-SHLDVKIDGV 450 (700)
T ss_pred HHHHHHHHHHHCC-CEEEEeCHHH
Confidence 8999999999999 8999999843
No 102
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00028 Score=74.28 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=69.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHcc-------CCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENY-------GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~-------G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
..+.|.+|||+|||..+.++.+++ |-.++.+.|-+-. ..|+.+++++|+-+|. .|+..-+.-+=+-+.+.+
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle~-SPDL~aarkVAd~igt-~Hhe~~ft~qegidal~e 303 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLED-SPDLLAARKVADFIGT-IHHEHTFTIQEGIDALDE 303 (543)
T ss_pred CceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCCC-ChhHHHHHHHHHHhCC-cceEEEEcHHHHHHHHHH
Confidence 479999999999999998886542 4467766654332 2699999999999999 788876653322223333
Q ss_pred HHHhCccccC-cccccccCcHHHHHHHHHHHHHHcCCcEeeeCC
Q 011097 169 CLRAGAIYER-KYLLGTSMARPVIAKAMVDVAREVGADAVAHGC 211 (493)
Q Consensus 169 ~i~~~a~y~g-~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGh 211 (493)
.|-.--.|.- ..-++++ .-+|.+..++.|...|..|.
T Consensus 304 VI~hLETYDvttIRastp------myLlsr~Ikk~gvkmvlSGE 341 (543)
T KOG0571|consen 304 VIYHLETYDVTTIRASTP------MYLLSRKIKKLGVKMVLSGE 341 (543)
T ss_pred HheeeeccccceEecCCc------hHHHHHHHHhcceEEEEecC
Confidence 3322111211 0112222 13566777888988888884
No 103
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=96.75 E-value=0.026 Score=53.54 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=96.4
Q ss_pred EcCChHHHHHHHHHHHccCCeEEEEEEecCCCc-----ccHHHHHHHHHHcCCceEEEEcCc-HHHHHhhhhhHHHhCcc
Q 011097 102 YSGGLDTSVIVPWLRENYGCEVVCFTADVGQGI-----KELDGLEEKAKASGACQLVVKDLK-EEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 102 ~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~-----ed~e~a~~~A~~LGI~~~~VvDl~-eef~~~~i~~~i~~~a~ 175 (493)
.-=|.||++.+..|++. |++|+++..|-.+.+ .-.+.++++|+.+|+ ++++-|.. ++|.+.+ ... .. .
T Consensus 5 ~CCaPCs~~~~~~L~~~-g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i-~~i~~~Y~~~~w~~~v-~~~-e~--e 78 (176)
T PF02677_consen 5 ICCAPCSTYPLERLREE-GFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGI-PLIEGDYDPEEWLRAV-KGL-ED--E 78 (176)
T ss_pred ecCccccHHHHHHHHHC-CCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCC-CEEecCCCHHHHHHHH-hhC-cc--C
Confidence 34588999999999997 999999999988842 346789999999999 78887765 4444332 111 11 0
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCC-CChHHHHHHHHhcCC--CCeEEec-cccCCCCCHHHHHH
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKG-NDQVRFELTFFALNP--ELNVVAP-WREWDIQGREDAIE 251 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~g-nD~~r~~~~~~~l~p--~i~ii~P-Lr~~~l~sKeEi~~ 251 (493)
.++ ..-|..|=.++.....++|+++|+|++.|--..+. .|....+.....+.. .++.+.. |+.-+ .-.+-++
T Consensus 79 pE~--g~RC~~Cy~~RL~~tA~~A~e~gfd~FtTTL~~Sp~k~~~~I~~iG~~~~~~~gv~f~~~DfRk~~--g~~~~~~ 154 (176)
T PF02677_consen 79 PEG--GKRCRVCYDLRLEKTAQYAKELGFDYFTTTLLISPYKNHELINEIGERLAKEYGVEFLYRDFRKKN--GFQRSIE 154 (176)
T ss_pred Ccc--CchhHHHHHHHHHHHHHHHHHcCCCEEEccccCcCccCHHHHHHHHHHHHHhhCCeEEeeccccCc--cHHHHHH
Confidence 011 01122344677788899999999999998644321 122222222222211 2322221 33211 2345668
Q ss_pred HHHHCCCCCCCCCCCCCcc
Q 011097 252 YAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 252 yA~~~GIp~~~t~~cpyS~ 270 (493)
.++++||=-..=..|-||.
T Consensus 155 lske~glYRQ~YCGCifS~ 173 (176)
T PF02677_consen 155 LSKELGLYRQNYCGCIFSE 173 (176)
T ss_pred HHHHhCCccCCCCcccccc
Confidence 9999998433224677775
No 104
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=96.50 E-value=0.0047 Score=63.64 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=54.9
Q ss_pred cccChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHc---cCC-eEEEEEEec-CCCcccH
Q 011097 63 IRACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLREN---YGC-EVVCFTADV-GQGIKEL 137 (493)
Q Consensus 63 ~~lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~---~G~-eViavtid~-Gq~~ed~ 137 (493)
..+|.+--.+...+|..- +++.-.+|.|+|||||||.++++++.+. .|. +|..+++|. ||-...+
T Consensus 5 K~y~~~nV~eA~~eRl~~----------if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~Ti 74 (407)
T COG3969 5 KIYLDENVLEAAIERLEW----------IFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTI 74 (407)
T ss_pred hccCcchHHHHHHHHHHH----------HHhcCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHH
Confidence 446666666776666532 3344478999999999999999998642 355 688888995 7744567
Q ss_pred HHHHHHHHH-cCCce
Q 011097 138 DGLEEKAKA-SGACQ 151 (493)
Q Consensus 138 e~a~~~A~~-LGI~~ 151 (493)
+.+.+.-.. .++.+
T Consensus 75 dyV~em~~~~~dv~~ 89 (407)
T COG3969 75 DYVQEMRESYHDVIE 89 (407)
T ss_pred HHHHHHHhcccCccc
Confidence 777776654 45433
No 105
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.08 E-value=0.25 Score=48.45 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=60.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC--ccc----------HHHHHHHHHHcCCceEEEEcCcHHHHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG--IKE----------LDGLEEKAKASGACQLVVKDLKEEFVK 163 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~--~ed----------~e~a~~~A~~LGI~~~~VvDl~eef~~ 163 (493)
+||+-.+||||||...+.-..+. |++|+|+.--.... .++ -+.+.-+|+.+|+ |++.-..+-.=.
T Consensus 1 MrvvaLiSGGKDScynmm~cv~~-gHeiVaLanl~p~~d~~delDSyMyQtVGh~~i~lyaecm~l-Plyrr~i~g~s~- 77 (277)
T KOG2316|consen 1 MRVVALISGGKDSCYNMMCCVRL-GHEIVALANLHPKEDESDELDSYMYQTVGHDVIDLYAECMGL-PLYRRRIRGRSI- 77 (277)
T ss_pred CcEEEEEeCChHHHHHHHHHHHc-CCeeeeeecccCCcccchhHHHHHHHhhhHHHHHHHHHHhcC-ceeeeeccCccc-
Confidence 37899999999999999888886 99999986322211 111 2345667888888 777654431100
Q ss_pred hhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHc-CCcEeeeCCCCC
Q 011097 164 DYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREV-GADAVAHGCTGK 214 (493)
Q Consensus 164 ~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~-Gad~IAtGhn~~ 214 (493)
...-.|... -+- --.=.|.++..+-+++ ..+.|+.|+.+.
T Consensus 78 -------nq~l~Y~~t--~~D--EvEDLy~ll~~VK~~~p~~eaVS~GAIlS 118 (277)
T KOG2316|consen 78 -------NQKLQYTKT--EGD--EVEDLYELLKTVKEKIPDVEAVSVGAILS 118 (277)
T ss_pred -------ccccccccC--CCc--hHHHHHHHHHHHHhhCCCceeeehhhhHh
Confidence 000011000 000 0012345566666666 677888887654
No 106
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=93.96 E-value=0.061 Score=46.68 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=30.9
Q ss_pred CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccC
Q 011097 232 LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDR 272 (493)
Q Consensus 232 i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~ 272 (493)
++.|+||... +++|++.||..+|||+.. .+|||+.+.
T Consensus 1 v~rIRPL~~v---~E~ei~~ya~~~~lp~~~-~~CP~~~~a 37 (104)
T TIGR00269 1 VPRIKPLRYI---PEKEVVLYAFLNELKVHL-DECPYSSLS 37 (104)
T ss_pred CCcccccccC---CHHHHHHHHHHcCCCcCC-CCCCCCCCC
Confidence 3578999865 799999999999999864 689998753
No 107
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=1.6 Score=41.99 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=104.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCc-----ccHHHHHHHHHHcCCceEEEEcCc--HHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGI-----KELDGLEEKAKASGACQLVVKDLK--EEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~-----ed~e~a~~~A~~LGI~~~~VvDl~--eef~~~~i~~ 168 (493)
.||+|=.--+.||+..+..|++. |.+++.++-|-.+.. .-.+..+++|+++|| +++--|.. +.|.+.
T Consensus 4 ~kiLlH~CCAPcs~y~le~l~~~-~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i-~~iegdY~~~~~w~~~---- 77 (204)
T COG1636 4 PKLLLHSCCAPCSGYVLEKLRDS-GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGI-NFIEGDYEDLEKWFER---- 77 (204)
T ss_pred CeeEEEeecCCCcHHHHHHHHhc-CcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCC-eeeecCcccHHHHHHH----
Confidence 58888888999999999999996 999999999988742 234578899999999 78777773 224332
Q ss_pred HHHhCcc-ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC-CCChHHHHHHH-Hhc-CCCCeEEec-cccCCC
Q 011097 169 CLRAGAI-YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK-GNDQVRFELTF-FAL-NPELNVVAP-WREWDI 243 (493)
Q Consensus 169 ~i~~~a~-y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~-gnD~~r~~~~~-~~l-~p~i~ii~P-Lr~~~l 243 (493)
++.-.. .+|. .-|..|=-+++....+.|.++|.+++.|--..+ -.|...++-.. ..- ...+..+.| |+.-.
T Consensus 78 -vKg~E~EpE~G--~RC~~Cfd~Rle~tA~~A~e~G~d~ftttL~iSp~Kn~~qin~~G~~~~k~y~V~yl~~dfrK~g- 153 (204)
T COG1636 78 -VKGMEDEPEGG--KRCTMCFDMRLEKTAKKAKELGFDVFTTTLLISPKKNMNQINEIGERAAKPYGVVYLPSNFRKNG- 153 (204)
T ss_pred -hhcchhCCCCC--chhHhHHHHHHHHHHHHHHHcCCchhhhheecCcccCHHHHHHHhHHhhcccCceecCccccccc-
Confidence 121000 1221 122334568888999999999999998754322 12333333221 111 124555555 55432
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 244 QGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 244 ~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
.-...++++++.+|--..-..|-||-
T Consensus 154 -g~~r~~elske~~~YrQ~YCGCvysl 179 (204)
T COG1636 154 -GYQRSIELSKEENIYRQEYCGCVYSL 179 (204)
T ss_pred -chHHHHHHHHHHhHHHhhccchhhhH
Confidence 35567788888887322224677774
No 108
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=90.48 E-value=3.8 Score=35.22 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=58.1
Q ss_pred EEEEEEcCChHHHHHHHHHHH---ccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhh
Q 011097 97 KVVLAYSGGLDTSVIVPWLRE---NYGCEVVCFTADVGQG-------IKELDGLEEKAKASGACQLVVKDLKEEFVKDYI 166 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e---~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i 166 (493)
+|+|+++|...|--++.|..+ .++.+++.+|+..+.. .+.++.+++.+++.++ +..++.-.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~-------- 71 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGA-EVVTLPGD-------- 71 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCC-EEEEEeCC--------
Confidence 589999999988888777643 2478999999876532 1234455666666666 33222100
Q ss_pred hhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC
Q 011097 167 FPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK 214 (493)
Q Consensus 167 ~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~ 214 (493)
. ....+.+++++.++|.|..|+++.
T Consensus 72 ----------------------~-~~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 72 ----------------------D-VAEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred ----------------------c-HHHHHHHHHHHcCCCEEEeCCCCC
Confidence 0 124678889999999999998765
No 109
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=88.81 E-value=1.5 Score=42.72 Aligned_cols=146 Identities=21% Similarity=0.213 Sum_probs=92.2
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcC-CceEEEEcCc-----HHHHHhhhhhH
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASG-ACQLVVKDLK-----EEFVKDYIFPC 169 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LG-I~~~~VvDl~-----eef~~~~i~~~ 169 (493)
-+..++||--| +|++.+|+.. |-.+--+++|.|.. .+.+....++-+++| + +.++.-.. ..|.....+.+
T Consensus 48 ~~q~a~~G~~~-lvlid~~~~~-~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i-~I~~~~pd~~e~ea~~~~K~~~~~ 124 (261)
T KOG0189|consen 48 LFQTAASGLEG-LVLIDMLSKT-GRPFRLFFIDTLHHFPETLRLFDAVEKKYGNI-RIHVYFPDAVEVEALFASKGGFSL 124 (261)
T ss_pred HHHHHhccccc-hHHHHHHHHc-CCCceeEEeeccccChHHHHHHHHHHHhcCce-EEEEEcchhHHHHHHHHhccchhh
Confidence 46677887655 6778888886 87777889999874 356666667777898 6 66664221 23332222222
Q ss_pred HHhCccccCcccccc-cCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH--HHHHHHHhcCCC--CeEEeccccCCCC
Q 011097 170 LRAGAIYERKYLLGT-SMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV--RFELTFFALNPE--LNVVAPWREWDIQ 244 (493)
Q Consensus 170 i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~--r~~~~~~~l~p~--i~ii~PLr~~~l~ 244 (493)
... +- -|||..+.+-+-+.-+.++..++.||-.- ||. |-+.-+-.+.|- +--+.||..|
T Consensus 125 ~E~----------~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRk---sQ~gtRselpiVqvD~~fellK~NPlaN~--- 188 (261)
T KOG0189|consen 125 WED----------DHQEYDRLRKVEPARRAYKGLNVKAVFTGRRK---SQGGTRSELPIVQVDPVFELLKINPLANW--- 188 (261)
T ss_pred eec----------CchhhhhhhhccHHHHHhhccceeeEEecccc---cCCCcccccceEEecCccceeeecccccc---
Confidence 111 11 25565555556666678889999999643 332 222212223332 4557799998
Q ss_pred CHHHHHHHHHHCCCCCC
Q 011097 245 GREDAIEYAKKHNVPVP 261 (493)
Q Consensus 245 sKeEi~~yA~~~GIp~~ 261 (493)
+=.++..|.+.+++|+.
T Consensus 189 ~~~dV~nyi~t~nVP~N 205 (261)
T KOG0189|consen 189 EFNDVWNYIRTNNVPYN 205 (261)
T ss_pred cHHHHHHHHHhcCCcHH
Confidence 57899999999999984
No 110
>PRK10490 sensor protein KdpD; Provisional
Probab=88.49 E-value=3.5 Score=48.63 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=48.1
Q ss_pred CCCEEEEEEcCChHHHHHHHH---HHHccCCeEEEEEEecCCC----c---ccHHHHHHHHHHcCCceEEEEcCcHHHHH
Q 011097 94 KLNKVVLAYSGGLDTSVIVPW---LRENYGCEVVCFTADVGQG----I---KELDGLEEKAKASGACQLVVKDLKEEFVK 163 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~---L~e~~G~eViavtid~Gq~----~---ed~e~a~~~A~~LGI~~~~VvDl~eef~~ 163 (493)
-.++|+|++||+..|-.++.. |.+.++.+.++++++.+.. . ..+....++|+++|. +..++.- +...+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa-~~~~~~~-~dva~ 326 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGA-ETATLSD-PAEEK 326 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCC-EEEEEeC-CCHHH
Confidence 357999999999988777655 3444688999999987631 1 233444569999999 6666533 23444
Q ss_pred hhh
Q 011097 164 DYI 166 (493)
Q Consensus 164 ~~i 166 (493)
.++
T Consensus 327 ~i~ 329 (895)
T PRK10490 327 AVL 329 (895)
T ss_pred HHH
Confidence 433
No 111
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=84.88 E-value=0.7 Score=49.67 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=24.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHcc----CCeEEEEEE
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENY----GCEVVCFTA 128 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~----G~eViavti 128 (493)
.+|.|.||||+||++++.++.+.. -++++-|.+
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF 287 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAF 287 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeec
Confidence 479999999999999999887642 245554444
No 112
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=81.76 E-value=19 Score=30.75 Aligned_cols=35 Identities=3% Similarity=0.019 Sum_probs=25.1
Q ss_pred EEEEEEcCChHHHHHHHHH---HHccCCeEEEEEEecC
Q 011097 97 KVVLAYSGGLDTSVIVPWL---RENYGCEVVCFTADVG 131 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L---~e~~G~eViavtid~G 131 (493)
+|+|++.|.-+|.-++.+. ....+.+|+.+|+...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~ 38 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEV 38 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEec
Confidence 5899999887776665443 3334789999998654
No 113
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=78.92 E-value=4 Score=35.23 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=43.6
Q ss_pred EEEEEEcCChHHHHHHHHHHHc---cC--CeEEEEEEec--------------CCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 97 KVVLAYSGGLDTSVIVPWLREN---YG--CEVVCFTADV--------------GQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~---~G--~eViavtid~--------------Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
||+|+.+||.=|++++.-+++. .| ++|.++.+.. .|-.-..+.+++.++..|+ |+.++|.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~i-pv~~I~~ 80 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGI-KLVTTTG 80 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCC-CEEEeCH
Confidence 6899999999999998888653 24 4555555431 1111356778999999999 8999987
Q ss_pred c
Q 011097 158 K 158 (493)
Q Consensus 158 ~ 158 (493)
.
T Consensus 81 ~ 81 (99)
T cd05565 81 K 81 (99)
T ss_pred H
Confidence 4
No 114
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=78.89 E-value=14 Score=32.54 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.2
Q ss_pred EEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEec
Q 011097 97 KVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADV 130 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~ 130 (493)
+|+|++.|.-.|.-++.|..+. .|.+++.+|+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~ 37 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHP 37 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEecc
Confidence 5899999999999999888653 378999999853
No 115
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=77.22 E-value=18 Score=42.13 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=51.5
Q ss_pred CCEEEEEEcCChHHHHHHHHHH---HccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCCceEEEEcCcHHHHHh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFTADVGQG-------IKELDGLEEKAKASGACQLVVKDLKEEFVKD 164 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~---e~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~ 164 (493)
.++|+|++||+-.|--++.... +.++.+.++++++.+.. .+.+....++|++||. +..++.- +...+.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGa-e~~~l~~-~dv~~~ 325 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGA-EIVTLYG-GDVAKA 325 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCC-eEEEEeC-CcHHHH
Confidence 3799999999999987766543 34588999999997642 1356778899999999 7877754 334444
Q ss_pred hh
Q 011097 165 YI 166 (493)
Q Consensus 165 ~i 166 (493)
++
T Consensus 326 i~ 327 (890)
T COG2205 326 IA 327 (890)
T ss_pred HH
Confidence 33
No 116
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=73.74 E-value=45 Score=27.59 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=28.4
Q ss_pred EEEEEEcCChHHHHHHHHHHH---ccCCeEEEEEEecCC
Q 011097 97 KVVLAYSGGLDTSVIVPWLRE---NYGCEVVCFTADVGQ 132 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e---~~G~eViavtid~Gq 132 (493)
+|+|+++++..+..++.+... ..+.+++.+++....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~ 39 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPP 39 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCC
Confidence 589999998888888877643 248899999997654
No 117
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=67.14 E-value=12 Score=32.64 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCC--eEEEEEEecC--------CC--------cccHHHHHHHHHHcCCceEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGC--EVVCFTADVG--------QG--------IKELDGLEEKAKASGACQLV 153 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~--eViavtid~G--------q~--------~ed~e~a~~~A~~LGI~~~~ 153 (493)
|+||+++..+|.=||.++.-+++. .|. +|.+..+... .. .-..+.+++.|+..|+ |..
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~i-pv~ 79 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGK-PVV 79 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCC-CEE
Confidence 368999999999888888777542 254 4444444211 00 0235678888888999 788
Q ss_pred EEcCc
Q 011097 154 VKDLK 158 (493)
Q Consensus 154 VvDl~ 158 (493)
++|..
T Consensus 80 ~I~~~ 84 (104)
T PRK09590 80 QIPPQ 84 (104)
T ss_pred EeCHH
Confidence 88764
No 118
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=65.42 E-value=20 Score=30.52 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=42.6
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCC--eEEEEEEec-----C---------CCcccHHHHHHHHHHcCCceEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGC--EVVCFTADV-----G---------QGIKELDGLEEKAKASGACQLVVK 155 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~--eViavtid~-----G---------q~~ed~e~a~~~A~~LGI~~~~Vv 155 (493)
.++|+++..+|.=|+.++.-+++. .|+ +|.+..+.. . |-....+.+++.++..|+ |..++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~i-pv~~I 81 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGI-PVEVI 81 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCC-CEEEe
Confidence 368999999999999888777552 254 454544311 1 101356778888888898 78888
Q ss_pred cCc
Q 011097 156 DLK 158 (493)
Q Consensus 156 Dl~ 158 (493)
|..
T Consensus 82 ~~~ 84 (95)
T TIGR00853 82 NGA 84 (95)
T ss_pred Chh
Confidence 763
No 119
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=64.13 E-value=6.6 Score=34.06 Aligned_cols=28 Identities=11% Similarity=0.312 Sum_probs=25.3
Q ss_pred CCCCeEEeccccCCCCCHHHHHHHHHHCCCC
Q 011097 229 NPELNVVAPWREWDIQGREDAIEYAKKHNVP 259 (493)
Q Consensus 229 ~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp 259 (493)
.+++.+++|||+. .++|+..|++..+++
T Consensus 29 ~~~i~~~rPLRd~---l~kEi~~Y~~~~~l~ 56 (107)
T PF10288_consen 29 GWDIKIIRPLRDL---LKKEIAFYNRLCGLE 56 (107)
T ss_pred CCCceEEeehHhC---CHHHHHHHHHHhCcc
Confidence 4579999999996 699999999999997
No 120
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=62.14 E-value=70 Score=28.09 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred CEEEEEEcCChHHHHHHHHHH---HccCCeEEEEEEecC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFTADVG 131 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~---e~~G~eViavtid~G 131 (493)
++|++++-|...|.-++.+.. +.+|.+++.+|++..
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~ 42 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVN 42 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccC
Confidence 689999999998888876643 234789999999543
No 121
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=59.36 E-value=20 Score=31.21 Aligned_cols=63 Identities=25% Similarity=0.428 Sum_probs=44.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cC--CeEEEEEEec-------------C-CCcccHHHHHHHHHHcCCceEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YG--CEVVCFTADV-------------G-QGIKELDGLEEKAKASGACQLVVK 155 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G--~eViavtid~-------------G-q~~ed~e~a~~~A~~LGI~~~~Vv 155 (493)
+++|++..|+|.-|+.++.-+++. .| +.|.|+..+. | |-.--...+++.++..|+ |..++
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~gi-PV~vI 79 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGI-PVEVI 79 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCCEEEEChHHHHHHHHHHHHhcccCC-CeEEe
Confidence 468999999999999998877653 14 4556666532 1 101245678888999999 89999
Q ss_pred cCc
Q 011097 156 DLK 158 (493)
Q Consensus 156 Dl~ 158 (493)
|-.
T Consensus 80 ~~~ 82 (102)
T COG1440 80 DML 82 (102)
T ss_pred CHH
Confidence 864
No 122
>PRK06849 hypothetical protein; Provisional
Probab=52.66 E-value=2.3e+02 Score=29.71 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=23.5
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTA 128 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavti 128 (493)
.++|+|.-.+.--+.-++..|++. |++|+++..
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~-G~~Vi~~d~ 36 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNA-GHTVILADS 36 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence 367776644444567788888887 999997754
No 123
>PRK04148 hypothetical protein; Provisional
Probab=47.14 E-value=1.6e+02 Score=26.88 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=42.6
Q ss_pred HHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcH-HHHHhhhhhHHHhCccccCcccccccCcHHHH
Q 011097 113 PWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKE-EFVKDYIFPCLRAGAIYERKYLLGTSMARPVI 191 (493)
Q Consensus 113 ~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~e-ef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~ 191 (493)
..|.+. |++|+|+-++. .+.+.|+..++ ...+-|+-+ .+. + .-.+...| ++-+.+. +
T Consensus 33 ~~L~~~-G~~ViaIDi~~--------~aV~~a~~~~~-~~v~dDlf~p~~~---~--y~~a~liy------sirpp~e-l 90 (134)
T PRK04148 33 KKLKES-GFDVIVIDINE--------KAVEKAKKLGL-NAFVDDLFNPNLE---I--YKNAKLIY------SIRPPRD-L 90 (134)
T ss_pred HHHHHC-CCEEEEEECCH--------HHHHHHHHhCC-eEEECcCCCCCHH---H--HhcCCEEE------EeCCCHH-H
Confidence 355565 99999886541 23455667787 666667631 110 0 00111122 1111123 3
Q ss_pred HHHHHHHHHHcCCcEeeeC
Q 011097 192 AKAMVDVAREVGADAVAHG 210 (493)
Q Consensus 192 ~~~l~~~A~e~Gad~IAtG 210 (493)
-..+.++|++.||+.+.+-
T Consensus 91 ~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 91 QPFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 4567899999999999874
No 124
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=46.21 E-value=46 Score=27.79 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=29.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVG 131 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~G 131 (493)
++|+|+++|..+|..++.+..+. .+.+|+.+|+..-
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~ 41 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPP 41 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEES
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecc
Confidence 68999999999999888877542 3889999998653
No 125
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=45.92 E-value=1.3e+02 Score=30.62 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=55.6
Q ss_pred cCCeEEEEEEecCCCc-----ccHHHHHHHHHHcCCceEEEEcC-c-HHHHHhhhhhHHHhCccccCcccccccCcHHHH
Q 011097 119 YGCEVVCFTADVGQGI-----KELDGLEEKAKASGACQLVVKDL-K-EEFVKDYIFPCLRAGAIYERKYLLGTSMARPVI 191 (493)
Q Consensus 119 ~G~eViavtid~Gq~~-----ed~e~a~~~A~~LGI~~~~VvDl-~-eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~ 191 (493)
+|.+-+++|++.|-.. +++..+.+.|.++|+ |....-+ + ..+.++ |..- +=.
T Consensus 109 lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gm-p~v~~~YpRg~~~~~~---------------~~~d-----~~~ 167 (265)
T COG1830 109 LGADAVGATVYVGSETEREMIENISQVVEDAHELGM-PLVAWAYPRGPAIKDE---------------YHRD-----ADL 167 (265)
T ss_pred CCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCC-ceEEEEeccCCccccc---------------cccc-----HHH
Confidence 4899999999999742 456677888999999 6665322 1 111110 0000 112
Q ss_pred HHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc
Q 011097 192 AKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL 228 (493)
Q Consensus 192 ~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l 228 (493)
...+.++|.|+|||.|=+.-++ |+.+|+....+-
T Consensus 168 v~~aaRlaaelGADIiK~~ytg---~~e~F~~vv~~~ 201 (265)
T COG1830 168 VGYAARLAAELGADIIKTKYTG---DPESFRRVVAAC 201 (265)
T ss_pred HHHHHHHHHHhcCCeEeecCCC---ChHHHHHHHHhC
Confidence 3567889999999999886543 567787766543
No 126
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=45.80 E-value=89 Score=25.31 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=25.5
Q ss_pred EEEEEEcCChHHHHHH-HHHHHc---cCCeEEEEEEe
Q 011097 97 KVVLAYSGGLDTSVIV-PWLREN---YGCEVVCFTAD 129 (493)
Q Consensus 97 KVvVA~SGG~DSsvll-~~L~e~---~G~eViavtid 129 (493)
||+++.++|+=||.++ .-|++. .|+++...+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 7999999999999999 555432 38777777766
No 127
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=43.85 E-value=1e+02 Score=29.82 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=34.3
Q ss_pred CCEEEEEEcCChHHHHHHHHH-HHc-cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWL-REN-YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L-~e~-~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
|+||+|..||+=...-.+.-. .+. +..+|+.+..|-. + ..+++.|++.|| |+..++.
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~----~-~~~~~~a~~~gI-p~~~~~~ 59 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP----D-AYGLERAEAAGI-PTFVLDH 59 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc----c-chHHHHHHHcCC-CEEEECc
Confidence 468999999984333322211 221 2356766554432 1 246788999999 7877654
No 128
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=42.89 E-value=60 Score=27.49 Aligned_cols=61 Identities=28% Similarity=0.368 Sum_probs=38.7
Q ss_pred EEEEEEcCChHHHHHHHHHHHc---cCC--eEEEEEEec----C----------CCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 97 KVVLAYSGGLDTSVIVPWLREN---YGC--EVVCFTADV----G----------QGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~---~G~--eViavtid~----G----------q~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
||+++..+|.=|+.++.-+++. .|. +|.+..+.. . |-....+.+++.+...++ |..++|.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~-pv~~I~~ 79 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGI-PVAVIDM 79 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCC-cEEEcCh
Confidence 5899999999999888777553 254 454444321 1 101345566666667777 6777776
Q ss_pred c
Q 011097 158 K 158 (493)
Q Consensus 158 ~ 158 (493)
.
T Consensus 80 ~ 80 (96)
T cd05564 80 M 80 (96)
T ss_pred H
Confidence 3
No 129
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=42.65 E-value=50 Score=27.29 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=27.0
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecC
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVG 131 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~G 131 (493)
+.++|++...+|..|..++..|++. ||+ +..+.-|
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~-G~~--~~~l~GG 94 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAER-GYD--VDYLAGG 94 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc-Cce--eEEeCCc
Confidence 4567888888889999999999986 998 3344434
No 130
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.71 E-value=57 Score=33.34 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=48.3
Q ss_pred cChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHH--c--cCCeEEEEEEecCCCcccHHHH
Q 011097 65 ACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRE--N--YGCEVVCFTADVGQGIKELDGL 140 (493)
Q Consensus 65 lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e--~--~G~eViavtid~Gq~~ed~e~a 140 (493)
...+.+.+.+++-..+..- .+.-.... +.+||+|..||+ .|. +-.++.. . ++.+|.+|..|- ..+
T Consensus 61 ~~~~~L~~~L~~l~~~l~l-~i~l~~~~-~~~ri~vl~Sg~-gsn-l~al~~~~~~~~~~~~i~~visn~-------~~~ 129 (286)
T PRK06027 61 FNLETLRADFAALAEEFEM-DWRLLDSA-ERKRVVILVSKE-DHC-LGDLLWRWRSGELPVEIAAVISNH-------DDL 129 (286)
T ss_pred CCHHHHHHHHHHHHHHhCC-EEEEcccc-cCcEEEEEEcCC-CCC-HHHHHHHHHcCCCCcEEEEEEEcC-------hhH
Confidence 3466777766655433110 22222222 236999999999 343 3334421 1 357888887662 244
Q ss_pred HHHHHHcCCceEEEEcCc
Q 011097 141 EEKAKASGACQLVVKDLK 158 (493)
Q Consensus 141 ~~~A~~LGI~~~~VvDl~ 158 (493)
..+|++.|| |.++++.+
T Consensus 130 ~~lA~~~gI-p~~~~~~~ 146 (286)
T PRK06027 130 RSLVERFGI-PFHHVPVT 146 (286)
T ss_pred HHHHHHhCC-CEEEeccC
Confidence 566999999 78887664
No 131
>COG2403 Predicted GTPase [General function prediction only]
Probab=41.46 E-value=3.3e+02 Score=29.42 Aligned_cols=117 Identities=27% Similarity=0.336 Sum_probs=76.8
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEec--------------------CCC---cccHHHHHHHHHHcCCc
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADV--------------------GQG---IKELDGLEEKAKASGAC 150 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~--------------------Gq~---~ed~e~a~~~A~~LGI~ 150 (493)
..+||++..-||-|=-+.=..+...-.|+|++|++-. |.+ +++.+.+.+++++.++
T Consensus 5 a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire~~V- 83 (449)
T COG2403 5 ARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIREKDV- 83 (449)
T ss_pred CceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHHcCC-
Confidence 4579999999999976665555543358999998742 221 2578999999999999
Q ss_pred eEEEEcCcH---HHHHhhhhhHHHhCccccC-----cccc-----------cccCcHHHHHHHHHHHHHHcCCcEeeeCC
Q 011097 151 QLVVKDLKE---EFVKDYIFPCLRAGAIYER-----KYLL-----------GTSMARPVIAKAMVDVAREVGADAVAHGC 211 (493)
Q Consensus 151 ~~~VvDl~e---ef~~~~i~~~i~~~a~y~g-----~y~~-----------~~~~~R~l~~~~l~~~A~e~Gad~IAtGh 211 (493)
+..|.|+++ +-.-.+....+.+++.|.- .|.. ++.|......+...+..++.|.+..+--|
T Consensus 84 D~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 84 DIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPKETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHhCCceeEEeCccHHhhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 788887764 2222445566677776621 1111 11134445556777788888888766655
No 132
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=38.14 E-value=52 Score=32.13 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCCCCCCEEEEEEcCChHHHHHHHHH---HHccCCeEEEEEEecC
Q 011097 90 GRRGKLNKVVLAYSGGLDTSVIVPWL---RENYGCEVVCFTADVG 131 (493)
Q Consensus 90 ~l~~~~~KVvVA~SGG~DSsvll~~L---~e~~G~eViavtid~G 131 (493)
+|++++ -|++|.||+=-|.-++.++ ++ .|..|+++|.+..
T Consensus 82 g~i~~~-DvviaiS~SGeT~el~~~~~~aK~-~g~~liaiT~~~~ 124 (202)
T COG0794 82 GMITPG-DVVIAISGSGETKELLNLAPKAKR-LGAKLIAITSNPD 124 (202)
T ss_pred cCCCCC-CEEEEEeCCCcHHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence 677775 4888988887777666665 45 4999999997644
No 133
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=36.48 E-value=3e+02 Score=25.58 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=40.3
Q ss_pred CCCEEEEEEcC---ChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHHHHHHcCC
Q 011097 94 KLNKVVLAYSG---GLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEEKAKASGA 149 (493)
Q Consensus 94 ~~~KVvVA~SG---G~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~~A~~LGI 149 (493)
+..+|++.... |-|-.+++..|.+. |++|..+.+.... ..++.....+.++++|+
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANR-GYNVTVYLVGPPEKLSEDAKQQLEILKKMGI 82 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHT-TCEEEEEEEESSSSTSHHHHHHHHHHHHTT-
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHC-CCeEEEEEEeccccCCHHHHHHHHHHHhcCC
Confidence 34677777655 46999999999887 9999887765432 34677888889999998
No 134
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=35.05 E-value=78 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCChHHHH-HH---HHHHHccCCeEEEEEE
Q 011097 94 KLNKVVLAYSGGLDTSV-IV---PWLRENYGCEVVCFTA 128 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsv-ll---~~L~e~~G~eViavti 128 (493)
+++||++++|||.=+.- +. ..|.+. |++|..+.-
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T 41 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVS 41 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEEC
Confidence 46899999999876655 23 334444 899876653
No 135
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.44 E-value=1.5e+02 Score=28.43 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=34.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHc--cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLREN--YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~--~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
+||+|..||+=.....+.-.... +..+|.+|..|.. + ..+.+.|++.|+ ++++++.
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~----~-~~~~~~A~~~gi-p~~~~~~ 58 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP----D-AYGLERAAQAGI-PTFVLSL 58 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc----c-chHHHHHHHcCC-CEEEECc
Confidence 48999999886554433222221 2357776655532 1 245688999999 7777654
No 136
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.14 E-value=1.2e+02 Score=33.06 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=55.2
Q ss_pred EEEcC-ChHHHH--HHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccc
Q 011097 100 LAYSG-GLDTSV--IVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIY 176 (493)
Q Consensus 100 VA~SG-G~DSsv--ll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y 176 (493)
|++=| |+=|++ ++.||++. |++|--|.+|.=.+ ..++.++.+|++.|+ +++-.+-..
T Consensus 106 vGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~Rp-AA~eQL~~La~q~~v-~~f~~~~~~----------------- 165 (451)
T COG0541 106 VGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRP-AAIEQLKQLAEQVGV-PFFGSGTEK----------------- 165 (451)
T ss_pred EeccCCChHhHHHHHHHHHHHc-CCceEEEecccCCh-HHHHHHHHHHHHcCC-ceecCCCCC-----------------
Confidence 44544 554444 35677775 99999999998765 578999999999999 554432110
Q ss_pred cCcccccccCcHHHHHHHHHHHHHHcCCcEeeeC
Q 011097 177 ERKYLLGTSMARPVIAKAMVDVAREVGADAVAHG 210 (493)
Q Consensus 177 ~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtG 210 (493)
.+ .-+.+..++.|++.++|+|..=
T Consensus 166 -----~P-----v~Iak~al~~ak~~~~DvvIvD 189 (451)
T COG0541 166 -----DP-----VEIAKAALEKAKEEGYDVVIVD 189 (451)
T ss_pred -----CH-----HHHHHHHHHHHHHcCCCEEEEe
Confidence 00 1245667889999999987553
No 137
>PRK11175 universal stress protein UspE; Provisional
Probab=32.93 E-value=2.6e+02 Score=27.86 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCcEeeeCCCCCC
Q 011097 193 KAMVDVAREVGADAVAHGCTGKG 215 (493)
Q Consensus 193 ~~l~~~A~e~Gad~IAtGhn~~g 215 (493)
..+.++|++.++|.|+.|+++++
T Consensus 251 ~~I~~~a~~~~~DLIVmG~~~~~ 273 (305)
T PRK11175 251 EVIPDLAEHLDAELVILGTVGRT 273 (305)
T ss_pred HHHHHHHHHhCCCEEEECCCccC
Confidence 45778999999999999987653
No 138
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.27 E-value=1.9e+02 Score=30.59 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=47.9
Q ss_pred hccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 81 VESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 81 ~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
|-+ .++.++|- ++++|.+.=-||+-|+... +.+.. |++|+++ |.+.. .-++.++.||+ +++++..+
T Consensus 170 vYs-pLk~~g~~-pG~~vgI~GlGGLGh~aVq-~AKAM-G~rV~vi--s~~~~-----kkeea~~~LGA-d~fv~~~~ 235 (360)
T KOG0023|consen 170 VYS-PLKRSGLG-PGKWVGIVGLGGLGHMAVQ-YAKAM-GMRVTVI--STSSK-----KKEEAIKSLGA-DVFVDSTE 235 (360)
T ss_pred Eee-hhHHcCCC-CCcEEEEecCcccchHHHH-HHHHh-CcEEEEE--eCCch-----hHHHHHHhcCc-ceeEEecC
Confidence 344 77888887 8899988888999887754 55554 9999876 45542 22355778999 78887773
No 139
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=31.76 E-value=2.5e+02 Score=30.58 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=36.5
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
.++||+| +.|+-....++..|.+++|.+|+++....+.. ++++ +..+.++-..+.+-|..
T Consensus 324 ~GkrvaI-~~~~~~~~~l~~~l~~ElGmevv~~~~~~~~~-~~~~---~~~~~~~~~~~~i~d~~ 383 (457)
T TIGR01284 324 RGKKVWV-WSGGPKLWHWPRPLEDELGMEVVAVSTKFGHE-DDYE---KIIARVREGTVIIDDPN 383 (457)
T ss_pred CCCEEEE-ECCCcHHHHHHHHHHHhCCCEEEEEEEEeCCH-HHHH---HHHHhcCCCeEEEeCCC
Confidence 4688876 66776676777788744699999887665532 3333 34444543124444443
No 140
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=31.60 E-value=3.1e+02 Score=27.67 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=47.5
Q ss_pred HHHHHHccC-CeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHH
Q 011097 112 VPWLRENYG-CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPV 190 (493)
Q Consensus 112 l~~L~e~~G-~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l 190 (493)
+..|+++.| -+|+++++ |.+..+-+.+.+.|-.+|+++.+.+.-+ .|.. .++ ..
T Consensus 45 Alrlke~~~g~~Vtvvs~--Gp~~a~~~~~lr~aLAmGaD~avli~d~-~~~g--~D~--------------------~~ 99 (256)
T PRK03359 45 ACQLKQQAAEAQVTALSV--GGKALTNAKGRKDVLSRGPDELIVVIDD-QFEQ--ALP--------------------QQ 99 (256)
T ss_pred HHHHhhhcCCCEEEEEEE--CCcchhhHHHHHHHHHcCCCEEEEEecC-cccC--cCH--------------------HH
Confidence 445677644 79999986 4322122356677889999766666422 2321 010 12
Q ss_pred HHHHHHHHHHHcCCcEeeeCCCC
Q 011097 191 IAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 191 ~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
..+.|..+.++.++|.|.+|...
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s 122 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGS 122 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcc
Confidence 33567777788899999999754
No 141
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=31.28 E-value=1.4e+02 Score=25.83 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=46.2
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC---------cccHHHHHHHHHHcCCceEEEEcCcHHHHHh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG---------IKELDGLEEKAKASGACQLVVKDLKEEFVKD 164 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~---------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~ 164 (493)
+||+|.=|||-....++.+.+.....+|++.--|-|.. ..+.+.+.++|++.+| .+.|+--.+-...-
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~i-dlvvvGPE~pL~~G 77 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKI-DLVVVGPEAPLVAG 77 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTE-SEEEESSHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCC-CEEEECChHHHHHH
Confidence 48999999999998887665543123555444454431 2678899999999999 79998765555544
No 142
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=31.17 E-value=60 Score=28.68 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=21.6
Q ss_pred CEEEEEEcCChHHHHHHHHHH---HccCCeEEEEE
Q 011097 96 NKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFT 127 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~---e~~G~eViavt 127 (493)
+||++++||+....-+..+++ +. |++|..+.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEE
Confidence 589999999988776655554 44 88977654
No 143
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=31.17 E-value=83 Score=30.20 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=24.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTA 128 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavti 128 (493)
++||++++|||.-+.-+..++++. .|++|..+.-
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T 37 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVIS 37 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEEC
Confidence 468999999998877776666542 2778776653
No 144
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.90 E-value=80 Score=27.36 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=26.3
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cC--CeEEEEEEec
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YG--CEVVCFTADV 130 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G--~eViavtid~ 130 (493)
++||+++.++|.=|+.++.-+++. .| ++|.++..+.
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~ 43 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL 43 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecch
Confidence 368999999999999999555432 24 5777766654
No 145
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.80 E-value=1.3e+02 Score=30.65 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=45.8
Q ss_pred cCCeEEEEEEecCCCc-----ccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHH
Q 011097 119 YGCEVVCFTADVGQGI-----KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAK 193 (493)
Q Consensus 119 ~G~eViavtid~Gq~~-----ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~ 193 (493)
+|.+-+++|++.|-.. +++-.+.+-|+++|+ |+..+--+ ++. .... .. ...
T Consensus 106 lGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~-Plla~~pr---G~~-----------------~~~~--~~-~ia 161 (264)
T PRK08227 106 LNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGM-PVMAVTAV---GKD-----------------MVRD--AR-YFS 161 (264)
T ss_pred CCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC-cEEEEecC---CCC-----------------cCch--HH-HHH
Confidence 4999999999999632 355667788999999 66653211 000 0000 11 335
Q ss_pred HHHHHHHHcCCcEeeeCCC
Q 011097 194 AMVDVAREVGADAVAHGCT 212 (493)
Q Consensus 194 ~l~~~A~e~Gad~IAtGhn 212 (493)
...++|-|+|||.|=|--+
T Consensus 162 ~aaRiaaELGADiVK~~y~ 180 (264)
T PRK08227 162 LATRIAAEMGAQIIKTYYV 180 (264)
T ss_pred HHHHHHHHHcCCEEecCCC
Confidence 6788999999999977543
No 146
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=29.07 E-value=1.8e+02 Score=31.95 Aligned_cols=62 Identities=15% Similarity=0.018 Sum_probs=38.1
Q ss_pred ccccCCCCCCCCEEEEEEcCChH-HHHHHHHHHHccCCeEEEEEEecCCCc---ccHHHHHHHHHHcCC
Q 011097 85 PKSGGGRRGKLNKVVLAYSGGLD-TSVIVPWLRENYGCEVVCFTADVGQGI---KELDGLEEKAKASGA 149 (493)
Q Consensus 85 ~~~~~~l~~~~~KVvVA~SGG~D-Ssvll~~L~e~~G~eViavtid~Gq~~---ed~e~a~~~A~~LGI 149 (493)
.+.++.-.-.++||+ +.||-| +..++..|.+ +|.+|+.+-.-.+... .+.+.+++.++..|.
T Consensus 304 al~d~~~~L~GKrva--i~Gdp~~~i~LarfL~e-lGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~ 369 (457)
T CHL00073 304 SLKDYLDLVRGKSVF--FMGDNLLEISLARFLIR-CGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNV 369 (457)
T ss_pred HHHHHHHHHCCCEEE--EECCCcHHHHHHHHHHH-CCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCC
Confidence 344433333578985 888855 4455566677 6999998855544321 245556666777776
No 147
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.55 E-value=3.8e+02 Score=26.75 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=33.7
Q ss_pred EEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCC
Q 011097 99 VLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-------IKELDGLEEKAKASGA 149 (493)
Q Consensus 99 vVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI 149 (493)
-+..|||+.. ++..+.+. |++.+-++..-.+. .++.+..++.+++.++
T Consensus 6 h~s~~g~~~~--a~~~~~~~-G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~ 60 (274)
T TIGR00587 6 HVSAAGGLQA--AYNRAAEI-GATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKN 60 (274)
T ss_pred EEeccCCHHH--HHHHHHHh-CCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCC
Confidence 4567899977 45677775 99988887764431 2456677777778876
No 148
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=28.45 E-value=1.2e+02 Score=24.87 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=26.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ 132 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq 132 (493)
+++|++...+|..|..++.+|+.. |++ + ..++-|.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~-G~~-v-~~l~GG~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQM-GWE-V-YVLEGGL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHc-CCE-E-EEecCcH
Confidence 467888888899999999999775 998 3 4455453
No 149
>PRK05569 flavodoxin; Provisional
Probab=28.29 E-value=1.2e+02 Score=26.73 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCChHHH----HHHHHHHHccCCeEEE-EEEecCCC-cccHHHHHHHHHHc
Q 011097 94 KLNKVVLAYSGGLDTS----VIVPWLRENYGCEVVC-FTADVGQG-IKELDGLEEKAKAS 147 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSs----vll~~L~e~~G~eVia-vtid~Gq~-~ed~e~a~~~A~~L 147 (493)
+++++++.-|+|-.+- .+..+|.+. |+++++ +.+. |.+ .++++.++++++++
T Consensus 82 ~~K~v~~f~t~g~~~~~~~~~~~~~l~~~-g~~~~~~~~~~-~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 82 ENKKCILFGSYGWDNGEFMKLWKDRMKDY-GFNVIGDLAVN-ESPNKEELNSAKELGKKL 139 (141)
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHHC-CCeEeeeEEEc-cCCCHHHHHHHHHHHHHH
Confidence 4578887777775431 233455554 888876 4443 433 36788888887775
No 150
>PRK10116 universal stress protein UspC; Provisional
Probab=28.16 E-value=3.9e+02 Score=23.02 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=25.1
Q ss_pred CEEEEEEcCChHHHHHHHHHH---HccCCeEEEEEE
Q 011097 96 NKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFTA 128 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~---e~~G~eViavti 128 (493)
++|+|++-|.-+|.-++.... +.++.+++.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v 39 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITL 39 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEE
Confidence 689999999888877765543 234788888887
No 151
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=27.91 E-value=4e+02 Score=24.17 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=47.7
Q ss_pred HHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHH
Q 011097 111 IVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPV 190 (493)
Q Consensus 111 ll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l 190 (493)
++.-|++..|-+|+++.+- +.. +..+.+++....+|+++.+.++-.. +. + | .+ ..
T Consensus 23 ~A~~La~~~g~~v~av~~G-~~~-~~~~~l~~~l~~~G~d~v~~~~~~~-~~-~---------------~-~~-----~~ 77 (164)
T PF01012_consen 23 AARRLAEALGGEVTAVVLG-PAE-EAAEALRKALAKYGADKVYHIDDPA-LA-E---------------Y-DP-----EA 77 (164)
T ss_dssp HHHHHHHCTTSEEEEEEEE-TCC-CHHHHHHHHHHSTTESEEEEEE-GG-GT-T---------------C--H-----HH
T ss_pred HHHHHHhhcCCeEEEEEEe-cch-hhHHHHhhhhhhcCCcEEEEecCcc-cc-c---------------c-CH-----HH
Confidence 3444555557899999876 322 3334555656669987666665431 10 0 0 00 12
Q ss_pred HHHHHHHHHHHcCCcEeeeCCCCCC
Q 011097 191 IAKAMVDVAREVGADAVAHGCTGKG 215 (493)
Q Consensus 191 ~~~~l~~~A~e~Gad~IAtGhn~~g 215 (493)
....+.+++++.+++.|..|++..+
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g 102 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFG 102 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 3457888899999999999986543
No 152
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=27.43 E-value=1.1e+02 Score=24.68 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCe-EE
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCE-VV 124 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~e-Vi 124 (493)
.+.++|++...+|..|..++..|++. |++ |.
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~-G~~~v~ 85 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREA-GFTDVR 85 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHc-CCceEE
Confidence 34578999999999999999899886 985 54
No 153
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=27.29 E-value=4.9e+02 Score=28.50 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ 132 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq 132 (493)
.++||++. .||.++-.++..|.+. |.+|++.....+.
T Consensus 334 ~GKrv~i~-~g~~~~~~~~~~l~EL-Gmevv~~g~~~~~ 370 (466)
T TIGR01282 334 EGKTVMLY-VGGLRPRHVIGAFEDL-GMEVIGTGYEFAH 370 (466)
T ss_pred CCCEEEEE-CCCCcHHHHHHHHHHC-CCEEEEEeeecCC
Confidence 46786655 5788888888888874 9999877665443
No 154
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=26.60 E-value=1.4e+02 Score=23.55 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCe
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCE 122 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~e 122 (493)
.+.++|++-..+|..+..++.+|++. |++
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~-G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLREL-GFK 82 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHc-CCC
Confidence 34567888889999999999999886 987
No 155
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=26.42 E-value=1.1e+02 Score=25.19 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCe
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCE 122 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~e 122 (493)
+.++|+|-..+|.-|..++.+|++. ||+
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~-G~~ 87 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKER-GFK 87 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHh-CCc
Confidence 4567888888999999999999886 985
No 156
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.16 E-value=1.2e+02 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCe
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCE 122 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~e 122 (493)
.+.++|++-..+|..|..++.+|++. |++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~-G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLAL-GGK 82 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHc-CCC
Confidence 34567888888999999999999775 985
No 157
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=26.05 E-value=1e+02 Score=29.31 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=23.5
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc--cCCeEEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN--YGCEVVCFT 127 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~--~G~eViavt 127 (493)
++||+|++||+.-+.-+..+++.. .|++|..+.
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLM 35 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 478999999998877665555432 288887554
No 158
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=25.78 E-value=1.2e+02 Score=30.48 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=31.7
Q ss_pred EEEEEEcCChHHH---------HHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 97 KVVLAYSGGLDTS---------VIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 97 KVvVA~SGG~DSs---------vll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
-..+.+|||.||- =.+..|++..|..+ ++..|.- +.+.++++.+. ++ +....|+
T Consensus 56 y~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~i---naHvGfv--dE~~~eklk~~-~v-dvvsLDf 118 (275)
T COG1856 56 YEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLI---NAHVGFV--DESDLEKLKEE-LV-DVVSLDF 118 (275)
T ss_pred ceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEE---EEEeeec--cHHHHHHHHHh-cC-cEEEEee
Confidence 3567789999984 24455555544433 4455653 23556666554 56 5666666
No 159
>PLN02828 formyltetrahydrofolate deformylase
Probab=25.66 E-value=2.7e+02 Score=28.41 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=39.3
Q ss_pred CCEEEEEEcCChHHHHHHHHHHH--c--cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRE--N--YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e--~--~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
..||+|.+||. +|..-. +|.. . ++.+|.+|--|...+ . -..+++.|+++|| |+++++.+
T Consensus 70 ~~riavlvSg~-g~nl~~-ll~~~~~g~l~~eI~~ViSn~~~~-~-~a~~~~~A~~~gI-P~~~~~~~ 132 (268)
T PLN02828 70 KYKIAVLASKQ-DHCLID-LLHRWQDGRLPVDITCVISNHERG-P-NTHVMRFLERHGI-PYHYLPTT 132 (268)
T ss_pred CcEEEEEEcCC-ChhHHH-HHHhhhcCCCCceEEEEEeCCCCC-C-CchHHHHHHHcCC-CEEEeCCC
Confidence 36999999998 454433 3332 1 357899888776432 1 1367788999999 78877653
No 160
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.47 E-value=1.2e+02 Score=25.62 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.1
Q ss_pred EEEEEEcCChHHHHHH
Q 011097 97 KVVLAYSGGLDTSVIV 112 (493)
Q Consensus 97 KVvVA~SGG~DSsvll 112 (493)
||+++...|.=||.++
T Consensus 4 kILvvCgsG~~TS~m~ 19 (94)
T PRK10310 4 KIIVACGGAVATSTMA 19 (94)
T ss_pred eEEEECCCchhHHHHH
Confidence 7999999999888875
No 161
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.24 E-value=5.4e+02 Score=27.63 Aligned_cols=61 Identities=25% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCChHHHH-HHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcH
Q 011097 94 KLNKVVLAYSGGLDTSV-IVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKE 159 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsv-ll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~e 159 (493)
.++||+ +.|+-|... ++.+|.+ +|.+++++..+.+.. ...+.+++.....+. +..+++-.+
T Consensus 299 ~gkrv~--v~g~~~~~~~l~~~L~e-lG~~~~~v~~~~~~~-~~~~~l~~~~~~~~~-~~~v~~~~d 360 (429)
T cd03466 299 FGRKAA--IYGEPDFVVAITRFVLE-NGMVPVLIATGSESK-KLKEKLEEDLKEYVE-KCVILDGAD 360 (429)
T ss_pred CCCEEE--EEcCHHHHHHHHHHHHH-CCCEEEEEEeCCCCh-HHHHHHHHHHHhcCC-ceEEEeCCC
Confidence 356775 445555543 3556666 599998877665532 223444444555565 566665543
No 162
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=25.21 E-value=1.3e+02 Score=24.22 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeE
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEV 123 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eV 123 (493)
.+.++|++-.+.|..|..++..|++. |++|
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~-G~~v 78 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQN-GFKV 78 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHC-CCCE
Confidence 34567888888899999999888875 9854
No 163
>PRK06852 aldolase; Validated
Probab=24.86 E-value=1.7e+02 Score=30.48 Aligned_cols=87 Identities=23% Similarity=0.201 Sum_probs=50.7
Q ss_pred CeEEEEEEecCCCc-----ccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHH
Q 011097 121 CEVVCFTADVGQGI-----KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAM 195 (493)
Q Consensus 121 ~eViavtid~Gq~~-----ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l 195 (493)
.+-+++|++.|-.. +++-.+.+-|+++|+ |+.+.-+.. +.. +. +.. .+=....+
T Consensus 135 AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~Gl-Pll~~~ypr--G~~-----i~-----~~~--------~~~~ia~a 193 (304)
T PRK06852 135 ILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGL-IAVLWIYPR--GKA-----VK-----DEK--------DPHLIAGA 193 (304)
T ss_pred ceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC-cEEEEeecc--Ccc-----cC-----CCc--------cHHHHHHH
Confidence 77889999998531 355667788999999 666532210 100 00 000 11123456
Q ss_pred HHHHHHcCCcEeeeCCCCC--CCChHHHHHHHHhc
Q 011097 196 VDVAREVGADAVAHGCTGK--GNDQVRFELTFFAL 228 (493)
Q Consensus 196 ~~~A~e~Gad~IAtGhn~~--gnD~~r~~~~~~~l 228 (493)
.++|.|+|||.|=+--+.. ..|...|.....+.
T Consensus 194 aRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~ 228 (304)
T PRK06852 194 AGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA 228 (304)
T ss_pred HHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC
Confidence 6899999999997754421 13555666555443
No 164
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.77 E-value=4.8e+02 Score=26.61 Aligned_cols=82 Identities=16% Similarity=0.053 Sum_probs=48.8
Q ss_pred ccChHHHHHHHHh-hhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHH--c--cCCeEEEEEEecCCCcccHH
Q 011097 64 RACEPKAIQALLS-SEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRE--N--YGCEVVCFTADVGQGIKELD 138 (493)
Q Consensus 64 ~lC~~~f~~~~~~-~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e--~--~G~eViavtid~Gq~~ed~e 138 (493)
..+.+++.+.++. ..++ -.-.++-... .+.+||+|.+||+ +|..-+ ++.. . +..+|.+|-.|..
T Consensus 54 ~~~~~~l~~~l~~~~~~~-~~l~i~l~~~-~~~~ki~vl~Sg~-g~nl~~-l~~~~~~g~l~~~i~~visn~~------- 122 (280)
T TIGR00655 54 RLEESSLLAAFKSALAEK-FEMTWELILA-DKLKRVAILVSKE-DHCLGD-LLWRWYSGELDAEIALVISNHE------- 122 (280)
T ss_pred CCCHHHHHHHHHHHHHHH-hCCEEEEecC-CCCcEEEEEEcCC-ChhHHH-HHHHHHcCCCCcEEEEEEEcCh-------
Confidence 4677888888877 4322 0001111111 2347999999999 554433 3332 1 2468888776632
Q ss_pred HHHHHHHHcCCceEEEEcC
Q 011097 139 GLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 139 ~a~~~A~~LGI~~~~VvDl 157 (493)
.+..+|+++|| |+++++.
T Consensus 123 ~~~~~A~~~gI-p~~~~~~ 140 (280)
T TIGR00655 123 DLRSLVERFGI-PFHYIPA 140 (280)
T ss_pred hHHHHHHHhCC-CEEEcCC
Confidence 33456999999 7888775
No 165
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=24.51 E-value=3.2e+02 Score=25.62 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=37.9
Q ss_pred CEEEEEEcCChHH----H-HHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHH
Q 011097 96 NKVVLAYSGGLDT----S-VIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEF 161 (493)
Q Consensus 96 ~KVvVA~SGG~DS----s-vll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef 161 (493)
++|+|.+|+|-|+ . -++..+++. |..|..+.+ | .+.+..+++|+.-|= .++.+.=.+++
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~-~I~v~~Igi--G---~~~~~L~~ia~~tgG-~~~~~~~~~~l 171 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKE-NIRVSVIGL--S---AEMHICKEICKATNG-TYKVILDETHL 171 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHc-CcEEEEEEe--c---hHHHHHHHHHHHhCC-eeEeeCCHHHH
Confidence 5688888887754 1 245566665 777766655 3 245678889999887 56665333444
No 166
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=24.43 E-value=1.3e+02 Score=28.54 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=24.3
Q ss_pred CEEEEEEcCChHHHHHHHHH---HHccCCeEEEEEEecC
Q 011097 96 NKVVLAYSGGLDTSVIVPWL---RENYGCEVVCFTADVG 131 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L---~e~~G~eViavtid~G 131 (493)
+||+|++||+.-+.-...++ ++. |++|..+.-+-+
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~-g~~V~vi~T~~A 38 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKL-GYDVTVLMTQAA 38 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHC-CCEEEEEEChHH
Confidence 47999999998775555544 443 899887664433
No 167
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.23 E-value=4.2e+02 Score=28.39 Aligned_cols=60 Identities=22% Similarity=0.157 Sum_probs=35.3
Q ss_pred CCCEEEEEEcCChHHHH-HHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 94 KLNKVVLAYSGGLDTSV-IVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsv-ll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
.++||+|. |+-|... ++.+|.+. |.+|+++....+.+ .+.+..+...+..+. +..+++..
T Consensus 298 ~gk~v~i~--~~~~~~~~l~~~L~e~-G~~v~~v~~~~~~~-~~~~~~~~~~~~~~~-~~~~v~~~ 358 (428)
T cd01965 298 GGKRVAIA--GDPDLLLGLSRFLLEM-GAEPVAAVTGTDNP-PFEKRMELLASLEGI-PAEVVFVG 358 (428)
T ss_pred cCCEEEEE--cChHHHHHHHHHHHHc-CCcceEEEEcCCCc-hhHHHHHHhhhhcCC-CceEEECC
Confidence 46788766 6666655 56667775 99999888766553 222333333344455 44454443
No 168
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=24.16 E-value=2.8e+02 Score=29.22 Aligned_cols=57 Identities=26% Similarity=0.287 Sum_probs=39.4
Q ss_pred CCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCC
Q 011097 90 GRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGA 149 (493)
Q Consensus 90 ~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI 149 (493)
++++++|+|++ +|=|.=|--++..+++ +|.+|.-++.|.||. -.++.+++.-.+.-.
T Consensus 87 N~lePgd~vLv-~~~G~wg~ra~D~~~r-~ga~V~~v~~~~G~~-~~le~i~~~lsqh~p 143 (385)
T KOG2862|consen 87 NLLEPGDNVLV-VSTGTWGQRAADCARR-YGAEVDVVEADIGQA-VPLEEITEKLSQHKP 143 (385)
T ss_pred hhcCCCCeEEE-EEechHHHHHHHHHHh-hCceeeEEecCcccC-ccHHHHHHHHHhcCC
Confidence 45577777665 4566677788888877 599999999999986 345555554444433
No 169
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=23.93 E-value=1.4e+02 Score=30.11 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=43.7
Q ss_pred eeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHhcCc
Q 011097 357 LVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKT 428 (493)
Q Consensus 357 ~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~~~l~~~i~~~q~~ 428 (493)
++|||.|+ ++.+....|..|+|.|..--++-++.. +.+...++ -+|.-..+..||..+++.
T Consensus 197 ~vGlkRrg-f~~e~i~alr~ayk~lfr~~~~~~e~~--~~i~~~~~--------~~~~v~~~~dFi~~s~r~ 257 (260)
T COG1043 197 IVGLKRRG-FSREEIHALRKAYKLLFRSGLTLREAL--EEIAEEYA--------DNPEVKEFIDFIASSSRG 257 (260)
T ss_pred eeeeeccC-CCHHHHHHHHHHHHHHeeCCCCHHHHH--HHHHHHhc--------CChHHHHHHHHHhhcccc
Confidence 56999887 567999999999999999988876653 22233332 357777777777776654
No 170
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=23.91 E-value=6.7e+02 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEe
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTAD 129 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid 129 (493)
+||+++=+|-. ..=++..+++. |+++++++.+
T Consensus 3 kkiLi~~~ge~-a~~~i~aa~~l-G~~~v~v~~~ 34 (478)
T PRK08463 3 HKILIANRGEI-AVRVIRACRDL-HIKSVAIYTE 34 (478)
T ss_pred cEEEEECCCHH-HHHHHHHHHHc-CCeEEEEECC
Confidence 57777766555 44455566775 9998888765
No 171
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=23.85 E-value=1e+02 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=26.9
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEE
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVV 124 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eVi 124 (493)
.+.++|+|-.+.|.-|..++..|++. |++.+
T Consensus 59 ~~~~~ivv~C~~G~rS~~aa~~L~~~-G~~~~ 89 (110)
T COG0607 59 PDDDPIVVYCASGVRSAAAAAALKLA-GFTNV 89 (110)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHc-CCccc
Confidence 34578999999999999999999997 98876
No 172
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=23.83 E-value=4.2e+02 Score=28.91 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred ccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHH
Q 011097 85 PKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDG 139 (493)
Q Consensus 85 ~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~ 139 (493)
.+..+.-.-.++||++ +.|+-.+..++..|.+++|.+|+++....+. .++++.
T Consensus 317 ~Ld~~~~~L~GkrvaI-~~~~~~~~~~~~~l~~ElGmevv~~~~~~~~-~~~~~~ 369 (461)
T TIGR01860 317 KLDWYKERLQGKKMCI-WTGGPRLWHWTKALEDDLGMQVVAMSSKFGH-QEDFEK 369 (461)
T ss_pred HHHHHHHHcCCCEEEE-ECCCchHHHHHHHHHHhCCCEEEEEeeecCC-HHHHHH
Confidence 3433333334688888 6688787778888885469999888655443 244444
No 173
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=23.68 E-value=8.8e+02 Score=25.58 Aligned_cols=124 Identities=11% Similarity=0.034 Sum_probs=64.1
Q ss_pred cChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCC-hHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHH
Q 011097 65 ACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGG-LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEK 143 (493)
Q Consensus 65 lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG-~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~ 143 (493)
..++-+++.+++-..+++.+. ..+.++.-++++|+ .|+..++.++.+. |..|++-....|... ...
T Consensus 203 ~~~~~~~~~l~~l~~el~~~~------~~~~~~~ril~tG~~~~~~~i~~~iE~~-G~~VV~~e~c~g~r~--~~~---- 269 (377)
T TIGR03190 203 IDKREHNEMLKKVLAALPSRK------VERKTGARFMTIGSENDDIAFMAMVESV-GATIVIDDQCSGTRY--FWN---- 269 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcc------ccCCCCeEEEEECCCCCcHHHHHHHHHC-CCEEEEECCCccccc--ccc----
Confidence 466777777666654322211 11234566667776 4666666777775 888876655445421 000
Q ss_pred HHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCccccccc-CcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH
Q 011097 144 AKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTS-MARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV 219 (493)
Q Consensus 144 A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~-~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~ 219 (493)
-+.+ --|.-+.+++. |....+|++. ..-.-|...+.+.+++.++|.|.+ |+.++.|+.
T Consensus 270 ----~v~~--~~dpl~alA~~-----------yl~~~~C~~~~~p~~~R~~~i~~lv~~~~~DGVI~-~~~kfC~~~ 328 (377)
T TIGR03190 270 ----ASKP--EDDVIKAIAER-----------YCDRPACPTKDYPVHTRYDHVLGLAKEYNVQGAIF-LQQKFCDPH 328 (377)
T ss_pred ----cCCC--CccHHHHHHHH-----------hcCCCCCCCcCCCHHHHHHHHHHHHHHhCCCEEEE-ecccCCCcc
Confidence 0100 00100111111 2222345552 122336788999999999998877 444555544
No 174
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=23.51 E-value=1.1e+02 Score=32.88 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=26.1
Q ss_pred CCEEEEEEcCChH---HHHHHHHHHHccCCeEEEEEEe
Q 011097 95 LNKVVLAYSGGLD---TSVIVPWLRENYGCEVVCFTAD 129 (493)
Q Consensus 95 ~~KVvVA~SGG~D---Ssvll~~L~e~~G~eViavtid 129 (493)
+++|+|++|||.. |.-+...|.+. |.+|..+.-.
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~-ga~v~vvmt~ 40 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRS-GAEVRVVMTE 40 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhC-CCeeEEEcch
Confidence 4699999999987 55566667776 9998877644
No 175
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.05 E-value=6.9e+02 Score=24.98 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=48.8
Q ss_pred EEEEEcCChHHHHHHHHHHHccCCeEEEEEE-ecCCC----------c-ccHHHHHHHHHHcCCceEEEEcCcHHHHHhh
Q 011097 98 VVLAYSGGLDTSVIVPWLRENYGCEVVCFTA-DVGQG----------I-KELDGLEEKAKASGACQLVVKDLKEEFVKDY 165 (493)
Q Consensus 98 VvVA~SGG~DSsvll~~L~e~~G~eViavti-d~Gq~----------~-ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~ 165 (493)
-++.++|=.|+--++..|.+. |++|+.-.. ++|.. . .+.+..++++.+-+| -.|||...-|..++
T Consensus 4 ~IlvlgGT~egr~la~~L~~~-g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i--~~VIDATHPfA~~i 80 (248)
T PRK08057 4 RILLLGGTSEARALARALAAA-GVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGI--DLVIDATHPYAAQI 80 (248)
T ss_pred eEEEEechHHHHHHHHHHHhC-CCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCC--CEEEECCCccHHHH
Confidence 356789999999999999886 887764333 34421 1 277889999999998 46889988787654
Q ss_pred h
Q 011097 166 I 166 (493)
Q Consensus 166 i 166 (493)
-
T Consensus 81 s 81 (248)
T PRK08057 81 S 81 (248)
T ss_pred H
Confidence 3
No 176
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.90 E-value=2.9e+02 Score=28.28 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=35.8
Q ss_pred CCEEEEEEcCChHHHHHHHHHH--H--ccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLR--E--NYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~--e--~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
.+||++..||+ .|.. -.++. + .++.+|.+|..|.. .+..+|+++|| |+++++.+
T Consensus 89 ~~ri~vl~Sg~-g~nl-~al~~~~~~~~~~~~i~~visn~~-------~~~~lA~~~gI-p~~~~~~~ 146 (286)
T PRK13011 89 RPKVLIMVSKF-DHCL-NDLLYRWRIGELPMDIVGVVSNHP-------DLEPLAAWHGI-PFHHFPIT 146 (286)
T ss_pred CceEEEEEcCC-cccH-HHHHHHHHcCCCCcEEEEEEECCc-------cHHHHHHHhCC-CEEEeCCC
Confidence 36999999997 3332 33332 1 13579988877632 25556999999 78887653
No 177
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=22.64 E-value=5e+02 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=22.8
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEec
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADV 130 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~ 130 (493)
+||+++=+|-. ..-++..+++. |+++++++.|-
T Consensus 3 ~kvLi~~~gei-a~~ii~a~~~~-Gi~~v~v~~~~ 35 (472)
T PRK07178 3 KKILIANRGEI-AVRIVRACAEM-GIRSVAIYSEA 35 (472)
T ss_pred cEEEEECCcHH-HHHHHHHHHHc-CCeEEEEeCCC
Confidence 57888844444 55556677775 99998887663
No 178
>PLN02428 lipoic acid synthase
Probab=22.62 E-value=4.1e+02 Score=28.16 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCCcEeeeCC
Q 011097 188 RPVIAKAMVDVAREVGADAVAHGC 211 (493)
Q Consensus 188 R~l~~~~l~~~A~e~Gad~IAtGh 211 (493)
.+-.|..+-++|.++|+.+|+.|-
T Consensus 299 ~p~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 299 TPEKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred CHHHHHHHHHHHHHcCCceEEecC
Confidence 355788999999999999999994
No 179
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.53 E-value=1.4e+02 Score=29.03 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc--cCCeEEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN--YGCEVVCFT 127 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~--~G~eViavt 127 (493)
++||++++|||.=+.-+..++++. .|++|..+.
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~ 37 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADYEVHLVI 37 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 579999999998665555444332 288887665
No 180
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=22.15 E-value=4.8e+02 Score=26.57 Aligned_cols=115 Identities=18% Similarity=0.314 Sum_probs=64.8
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCC-eEEEEEEe-----------------cCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGC-EVVCFTAD-----------------VGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~-eViavtid-----------------~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
.+|+|.=-||+=|-++= .|.+. |. ++.-+-+| .|+ .-.+..++..+.++= .+.|.-+
T Consensus 31 ~~V~VvGiGGVGSw~ve-ALaRs-Gig~itlID~D~v~vTN~NRQi~A~~~~iGk--~Kv~vm~eri~~InP-~c~V~~~ 105 (263)
T COG1179 31 AHVCVVGIGGVGSWAVE-ALARS-GIGRITLIDMDDVCVTNTNRQIHALLGDIGK--PKVEVMKERIKQINP-ECEVTAI 105 (263)
T ss_pred CcEEEEecCchhHHHHH-HHHHc-CCCeEEEEecccccccccchhhHhhhhhccc--HHHHHHHHHHHhhCC-CceEeeh
Confidence 47777777999998765 44443 53 33333332 333 245667777777763 4555333
Q ss_pred cHHHH-HhhhhhHHHhCccccCcccccccCcHHHHH-HHHHHHHHHcCCcEeeeCCCCCCCChHHHH
Q 011097 158 KEEFV-KDYIFPCLRAGAIYERKYLLGTSMARPVIA-KAMVDVAREVGADAVAHGCTGKGNDQVRFE 222 (493)
Q Consensus 158 ~eef~-~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~-~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~ 222 (493)
+.|. ++.+..++..+-. |..-+ .=.+.. -.|..+++..+...|.+|..+..-|+.|++
T Consensus 106 -~~f~t~en~~~~~~~~~D----yvIDa--iD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri~ 165 (263)
T COG1179 106 -NDFITEENLEDLLSKGFD----YVIDA--IDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQ 165 (263)
T ss_pred -HhhhCHhHHHHHhcCCCC----EEEEc--hhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceEE
Confidence 3333 2333333333221 22111 122333 367889999999999999876666777764
No 181
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=21.80 E-value=1.8e+02 Score=28.04 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=37.0
Q ss_pred CCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCc-eEEEEcCc
Q 011097 90 GRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGAC-QLVVKDLK 158 (493)
Q Consensus 90 ~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~-~~~VvDl~ 158 (493)
..+++++-+=+|.--|-||..++ ++ |++|+|+-.+ ...++.+.++|++-+++ .....|+.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA----~~-G~~VtAvD~s----~~al~~l~~~a~~~~l~i~~~~~Dl~ 87 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLA----SQ-GFDVTAVDIS----PVALEKLQRLAEEEGLDIRTRVADLN 87 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHH----HT-T-EEEEEESS----HHHHHHHHHHHHHTT-TEEEEE-BGC
T ss_pred hhcCCCcEEEcCCCCcHHHHHHH----HC-CCeEEEEECC----HHHHHHHHHHHhhcCceeEEEEecch
Confidence 34455555568888899996554 65 9999987532 34678888999888873 23445653
No 182
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=21.51 E-value=1.7e+02 Score=25.59 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=25.7
Q ss_pred CCCCEEEEEE-cCChHHHHHHHHHHHccCCeEEEEEEecCC
Q 011097 93 GKLNKVVLAY-SGGLDTSVIVPWLRENYGCEVVCFTADVGQ 132 (493)
Q Consensus 93 ~~~~KVvVA~-SGG~DSsvll~~L~e~~G~eViavtid~Gq 132 (493)
.+.++|+|-. +||.=|..++.+|+. +|++| ..++-|.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~-~G~~v--~~L~GG~ 121 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLES-LGIDV--PLLEGGY 121 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHH-cCCce--eEeCCcH
Confidence 3456788887 588889888866666 49974 3555554
No 183
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=21.50 E-value=4.8e+02 Score=27.89 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
.++||+| +.|+-....++.+|.+++|.+|+++....+.. ++ .++..+.+.-.+..+-|..
T Consensus 287 ~Gk~vai-~~~~~~~~~la~~l~~elG~~v~~i~~~~~~~-~~---~~~~~~~~~~~~~~v~d~~ 346 (415)
T cd01977 287 KGKKVCI-WTGGPKLWHWTKVIEDELGMQVVAMSSKFGHQ-ED---FEKVIARGGEGTIYIDDPN 346 (415)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHhcCCEEEEEEEEeccH-HH---HHHHHHhcCCceEEEeCCC
Confidence 4688888 55666777777788644599999886655432 22 2333444443245444544
No 184
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=2.5e+02 Score=25.40 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCCCEEEEEEcCChH----------HHHHHHHHHHc---cCCeEEEEEEecCCC
Q 011097 93 GKLNKVVLAYSGGLD----------TSVIVPWLREN---YGCEVVCFTADVGQG 133 (493)
Q Consensus 93 ~~~~KVvVA~SGG~D----------Ssvll~~L~e~---~G~eViavtid~Gq~ 133 (493)
.++++|.++|+|++| =.++.....+. ..-++.-|+++.|..
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 346789999999993 23333333221 256777788888864
No 185
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=21.18 E-value=5.5e+02 Score=26.22 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=47.6
Q ss_pred HHHHHccCCeEEEEEEecCCCc----c----------------cHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHh
Q 011097 113 PWLRENYGCEVVCFTADVGQGI----K----------------ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 113 ~~L~e~~G~eViavtid~Gq~~----e----------------d~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~ 172 (493)
..+.++ |.+|+-+++-.|..+ . -.+.+++.|+.||+..++..+....|.+.-+. .
T Consensus 19 a~~a~~-G~~V~vv~lT~Ge~g~~~~~~~~~~~~~~~~~l~~~R~~E~~~Aa~~LGv~~~~~L~~~~~~~Dsgl~----~ 93 (284)
T TIGR03445 19 ARYAAR-GADVTVVTCTLGEEGEVIGERWAQLAADRADQLGGYRIGELTAALRALGVGDPRFLGGAGRWRDSGMA----G 93 (284)
T ss_pred HHHHHC-CCeEEEEEecCCccCCcCchhhhhcccccHHHHHHHHHHHHHHHHHHcCCCeEEEcCCcCcccCCCCC----C
Confidence 344565 999998888776421 0 12556778899999545555532222211100 0
Q ss_pred CccccCcccc-cccCcHHHHHHHHHHHHHHcCCcEeee
Q 011097 173 GAIYERKYLL-GTSMARPVIAKAMVDVAREVGADAVAH 209 (493)
Q Consensus 173 ~a~y~g~y~~-~~~~~R~l~~~~l~~~A~e~Gad~IAt 209 (493)
.. ....+. -+.....-....+.++.++...++|.|
T Consensus 94 ~p--~~~~~~~~~~~~~~e~~~~l~~~Ir~~~PdvViT 129 (284)
T TIGR03445 94 TP--SRSRPRAFVDADVDEAAGALVAVIREVRPHVVVT 129 (284)
T ss_pred CC--cccCccccccCCHHHHHHHHHHHHHHhCCcEEEe
Confidence 00 000000 000012224567788889999999988
No 186
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.16 E-value=1.8e+02 Score=24.14 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHhcC
Q 011097 368 TPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITK 427 (493)
Q Consensus 368 aPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~~~l~~~i~~~q~ 427 (493)
.--...|..|++.|..-.++-++.- +.+...+ .. +|+.+.+-.||..+++
T Consensus 30 ~~~i~~l~~ayr~l~~~~~~~~~a~--~~l~~~~-----~~---~~~v~~~~~Fi~~S~R 79 (83)
T PF13720_consen 30 KEEISALRRAYRILFRSGLTLEEAL--EELEEEY-----PD---SPEVREIVDFIRNSKR 79 (83)
T ss_dssp HHHHHHHHHHHHHHHTSSS-HHHHH--HHHHHHT-----TS---CHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHhc-----cC---CHHHHHHHHHHHhCCC
Confidence 3456678999999998777554432 1121111 22 9999999999997764
No 187
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=20.46 E-value=3.9e+02 Score=28.22 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=40.9
Q ss_pred ccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEE
Q 011097 85 PKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVK 155 (493)
Q Consensus 85 ~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~Vv 155 (493)
.+|+.++ .++++|+|.=-||+=++.+ .+++.. |.+|++++... .-++.|++||+ .+.+.
T Consensus 158 alk~~~~-~pG~~V~I~G~GGlGh~av-Q~Aka~-ga~Via~~~~~--------~K~e~a~~lGA-d~~i~ 216 (339)
T COG1064 158 ALKKANV-KPGKWVAVVGAGGLGHMAV-QYAKAM-GAEVIAITRSE--------EKLELAKKLGA-DHVIN 216 (339)
T ss_pred ehhhcCC-CCCCEEEEECCcHHHHHHH-HHHHHc-CCeEEEEeCCh--------HHHHHHHHhCC-cEEEE
Confidence 4455333 4578988877789988764 466665 99999998642 23467889999 56554
No 188
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=20.39 E-value=1e+02 Score=33.15 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=26.9
Q ss_pred CEEEEEEcCChHH--HHHHHHHHHcc---CCeEEEEEEecCCC
Q 011097 96 NKVVLAYSGGLDT--SVIVPWLRENY---GCEVVCFTADVGQG 133 (493)
Q Consensus 96 ~KVvVA~SGG~DS--svll~~L~e~~---G~eViavtid~Gq~ 133 (493)
..-++++-|++|| |+++.+|.+++ |++|.-+-.|.||+
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ 114 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQS 114 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCc
Confidence 3456677799996 44455554432 78999889999996
No 189
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=20.34 E-value=3e+02 Score=26.33 Aligned_cols=84 Identities=17% Similarity=0.314 Sum_probs=47.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC--CcccH-HHHHHHHHHcCCceEEEEcCcH--HHHHhhhhhHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ--GIKEL-DGLEEKAKASGACQLVVKDLKE--EFVKDYIFPCL 170 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq--~~ed~-e~a~~~A~~LGI~~~~VvDl~e--ef~~~~i~~~i 170 (493)
.|--+.+.==++.++ ...++. |++-.+=|+-..- ..+.+ +..++++++.|+ ++.-.|++. -|.+. ....
T Consensus 83 ~RC~~Cy~~RL~~tA--~~A~e~-gfd~FtTTL~~Sp~k~~~~I~~iG~~~~~~~gv-~f~~~DfRk~~g~~~~--~~ls 156 (176)
T PF02677_consen 83 KRCRVCYDLRLEKTA--QYAKEL-GFDYFTTTLLISPYKNHELINEIGERLAKEYGV-EFLYRDFRKKNGFQRS--IELS 156 (176)
T ss_pred chhHHHHHHHHHHHH--HHHHHc-CCCEEEccccCcCccCHHHHHHHHHHHHHhhCC-eEEeeccccCccHHHH--HHHH
Confidence 444444433344333 233454 8886655543322 11223 345567788899 899999986 66543 2455
Q ss_pred HhCccccCcccccccC
Q 011097 171 RAGAIYERKYLLGTSM 186 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~ 186 (493)
+....|...| |||.+
T Consensus 157 ke~glYRQ~Y-CGCif 171 (176)
T PF02677_consen 157 KELGLYRQNY-CGCIF 171 (176)
T ss_pred HHhCCccCCC-Ccccc
Confidence 6666777777 88843
No 190
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=20.27 E-value=1.6e+02 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCe-EE
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCE-VV 124 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~e-Vi 124 (493)
+.+.|++...+|..|..++.+|... |++ |.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~-G~~~v~ 95 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSL-GYENVG 95 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHc-CCccce
Confidence 3567888888899998888888775 985 53
No 191
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=20.14 E-value=3.4e+02 Score=23.41 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=42.7
Q ss_pred HHHHHccCCeEEEEEEecCCCc-----------c--cHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCc
Q 011097 113 PWLRENYGCEVVCFTADVGQGI-----------K--ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK 179 (493)
Q Consensus 113 ~~L~e~~G~eViavtid~Gq~~-----------e--d~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~ 179 (493)
..+.+. |.+|..+++--|... . -....++.|+.||+..+++.++.+.....
T Consensus 19 ~~~~~~-g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~--------------- 82 (128)
T PF02585_consen 19 AKLAEA-GHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLPG--------------- 82 (128)
T ss_dssp HHHHHT-T-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCTC---------------
T ss_pred HHHHhc-CCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCccc---------------
Confidence 345565 999998888766421 1 12455667889999667777765321100
Q ss_pred ccccccCcHHHHHHHHHHHHHHcCCcEeeeC
Q 011097 180 YLLGTSMARPVIAKAMVDVAREVGADAVAHG 210 (493)
Q Consensus 180 y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtG 210 (493)
....-+...+.++.++...+.|.|=
T Consensus 83 ------~~~~~~~~~l~~~i~~~~p~~V~t~ 107 (128)
T PF02585_consen 83 ------WSWEELVRDLEDLIREFRPDVVFTP 107 (128)
T ss_dssp ------HHHHHHHHHHHHHHHHH-ESEEEEE
T ss_pred ------ccHHHHHHHHHHHHHHcCCCEEEEC
Confidence 0123334567777788888888773
No 192
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.00 E-value=3.3e+02 Score=27.92 Aligned_cols=83 Identities=14% Similarity=0.029 Sum_probs=48.8
Q ss_pred ccChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHH--Hc--cCCeEEEEEEecCCCcccHHH
Q 011097 64 RACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLR--EN--YGCEVVCFTADVGQGIKELDG 139 (493)
Q Consensus 64 ~lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~--e~--~G~eViavtid~Gq~~ed~e~ 139 (493)
..+.+++.+.++...++. .-.++-..- .+.+||+|.+||+ .|..-+ ++. +. ++.+|.+|--|.. .
T Consensus 64 ~~~~~~l~~~l~~l~~~l-~l~~~i~~~-~~~~kiavl~Sg~-g~nl~a-l~~~~~~~~l~~~i~~visn~~-------~ 132 (289)
T PRK13010 64 AASVDTFRQEFQPVAEKF-DMQWAIHPD-GQRPKVVIMVSKF-DHCLND-LLYRWRMGELDMDIVGIISNHP-------D 132 (289)
T ss_pred CCCHHHHHHHHHHHHHHh-CCeEEEecC-CCCeEEEEEEeCC-CccHHH-HHHHHHCCCCCcEEEEEEECCh-------h
Confidence 456777877777654330 000111011 2236899999998 343322 332 21 3468887776532 3
Q ss_pred HHHHHHHcCCceEEEEcCc
Q 011097 140 LEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 140 a~~~A~~LGI~~~~VvDl~ 158 (493)
+.+.|++.|| |+++++.+
T Consensus 133 ~~~~A~~~gI-p~~~~~~~ 150 (289)
T PRK13010 133 LQPLAVQHDI-PFHHLPVT 150 (289)
T ss_pred HHHHHHHcCC-CEEEeCCC
Confidence 4688999999 89988765
Done!