Query 011097
Match_columns 493
No_of_seqs 440 out of 2384
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vl2_A Argininosuccinate synth 100.0 6E-113 2E-117 895.6 39.7 392 96-490 15-416 (421)
2 1k92_A Argininosuccinate synth 100.0 3E-104 9E-109 838.0 39.4 387 92-484 7-412 (455)
3 2nz2_A Argininosuccinate synth 100.0 4E-103 1E-107 824.8 40.4 392 95-490 5-407 (413)
4 1kor_A Argininosuccinate synth 100.0 1E-100 5E-105 802.8 41.3 395 96-491 1-395 (400)
5 2hma_A Probable tRNA (5-methyl 100.0 2.2E-32 7.6E-37 284.5 9.4 289 95-444 9-334 (376)
6 2der_A TRNA-specific 2-thiouri 100.0 2.4E-32 8.1E-37 284.6 7.6 287 90-435 12-335 (380)
7 2pg3_A Queuosine biosynthesis 99.9 4.6E-22 1.6E-26 192.7 16.1 165 95-266 2-189 (232)
8 1wy5_A TILS, hypothetical UPF0 99.9 5.6E-22 1.9E-26 201.4 15.4 170 69-262 2-190 (317)
9 3bl5_A Queuosine biosynthesis 99.9 3.1E-21 1.1E-25 183.9 13.8 157 95-259 3-176 (219)
10 3a2k_A TRNA(Ile)-lysidine synt 99.9 3.6E-21 1.2E-25 205.2 15.8 163 76-262 3-188 (464)
11 2dpl_A GMP synthetase, GMP syn 99.8 5.5E-21 1.9E-25 193.7 12.4 181 67-274 3-193 (308)
12 3k32_A Uncharacterized protein 99.8 5E-20 1.7E-24 175.7 11.7 148 95-261 6-157 (203)
13 1ni5_A Putative cell cycle pro 99.8 2E-18 6.8E-23 182.6 12.9 146 90-262 8-177 (433)
14 2ywb_A GMP synthase [glutamine 99.8 3.1E-18 1.1E-22 184.2 14.1 159 96-270 210-383 (503)
15 3tqi_A GMP synthase [glutamine 99.8 4.7E-19 1.6E-23 191.7 7.5 169 96-281 231-416 (527)
16 2c5s_A THII, probable thiamine 99.7 1.3E-17 4.5E-22 175.3 14.0 151 92-259 184-344 (413)
17 3uow_A GMP synthetase; structu 99.7 5.7E-18 2E-22 184.2 9.4 172 93-281 253-445 (556)
18 1sur_A PAPS reductase; assimil 99.7 6.2E-18 2.1E-22 161.9 8.5 153 95-261 44-201 (215)
19 3fiu_A NH(3)-dependent NAD(+) 99.7 1.1E-17 3.7E-22 164.8 10.4 159 95-270 29-194 (249)
20 2e18_A NH(3)-dependent NAD(+) 99.7 7.5E-18 2.6E-22 165.9 8.7 155 85-260 16-172 (257)
21 1gpm_A GMP synthetase, XMP ami 99.7 2.3E-17 7.8E-22 178.4 13.0 159 96-269 228-404 (525)
22 3p52_A NH(3)-dependent NAD(+) 99.7 2.4E-17 8.1E-22 162.4 11.6 145 96-259 27-175 (249)
23 1xng_A NH(3)-dependent NAD(+) 99.7 2.2E-17 7.4E-22 163.8 8.5 148 95-260 25-175 (268)
24 2vxo_A GMP synthase [glutamine 99.7 1.2E-16 4E-21 177.8 14.5 175 96-277 241-450 (697)
25 2o8v_A Phosphoadenosine phosph 99.6 3.9E-16 1.3E-20 153.5 11.3 155 96-261 46-202 (252)
26 1vbk_A Hypothetical protein PH 99.6 1.8E-15 6E-20 153.3 11.5 121 94-258 178-307 (307)
27 1wxi_A NH(3)-dependent NAD(+) 99.6 1.1E-14 3.7E-19 145.4 12.1 158 96-270 41-212 (275)
28 1zun_A Sulfate adenylyltransfe 99.5 7.4E-15 2.5E-19 149.8 8.0 149 96-261 47-225 (325)
29 1kqp_A NAD+ synthase, NH(3)-de 99.5 6E-14 2.1E-18 139.6 12.2 160 96-270 39-209 (271)
30 2oq2_A Phosphoadenosine phosph 99.5 3.6E-14 1.2E-18 140.3 9.3 150 97-261 43-207 (261)
31 3dpi_A NAD+ synthetase; ssgcid 99.5 5.7E-13 2E-17 133.4 15.2 162 96-271 47-222 (285)
32 3q4g_A NH(3)-dependent NAD(+) 99.5 5.2E-13 1.8E-17 133.4 14.5 166 96-275 41-224 (279)
33 3n05_A NH(3)-dependent NAD(+) 99.4 1.5E-13 5.1E-18 150.5 8.0 144 96-257 327-473 (590)
34 3rjz_A N-type ATP pyrophosphat 99.4 1.9E-12 6.4E-17 126.5 12.6 150 96-280 5-162 (237)
35 2wsi_A FAD synthetase; transfe 99.4 5.6E-13 1.9E-17 134.9 7.2 169 53-260 14-213 (306)
36 2goy_A Adenosine phosphosulfat 99.3 1.7E-12 5.7E-17 129.3 8.2 150 96-261 55-216 (275)
37 3ilv_A Glutamine-dependent NAD 99.1 2.6E-10 8.9E-15 125.9 13.0 148 95-259 303-505 (634)
38 3sdb_A Glutamine-dependent NAD 99.0 5.3E-10 1.8E-14 124.3 10.8 148 96-257 362-522 (680)
39 1ct9_A Asparagine synthetase B 98.7 4.5E-08 1.6E-12 106.4 12.9 108 96-213 227-350 (553)
40 1q15_A CARA; CMPR, (2S,5S)-5-c 98.7 1E-07 3.5E-12 102.4 12.3 108 96-213 239-347 (503)
41 1jgt_A Beta-lactam synthetase; 98.7 6.1E-08 2.1E-12 104.5 10.5 108 96-213 242-350 (513)
42 3fwk_A FMN adenylyltransferase 98.7 1E-07 3.4E-12 96.1 11.3 141 85-261 50-217 (308)
43 4f4h_A Glutamine dependent NAD 98.2 4.3E-06 1.5E-10 91.1 11.2 148 95-257 300-453 (565)
44 1mjh_A Protein (ATP-binding do 84.9 9.3 0.00032 32.8 11.3 35 95-129 5-42 (162)
45 3nbm_A PTS system, lactose-spe 84.2 2.8 9.5E-05 35.4 7.2 63 95-158 6-87 (108)
46 3hgm_A Universal stress protei 84.0 4.6 0.00016 33.9 8.7 35 96-130 3-40 (147)
47 2dum_A Hypothetical protein PH 81.4 8.4 0.00029 33.4 9.7 35 95-129 5-42 (170)
48 3loq_A Universal stress protei 76.7 16 0.00055 34.7 10.8 91 94-215 169-263 (294)
49 3dlo_A Universal stress protei 75.4 14 0.00047 31.9 9.1 90 96-214 25-128 (155)
50 3fg9_A Protein of universal st 75.3 17 0.00057 31.0 9.5 35 96-130 16-55 (156)
51 3tnj_A Universal stress protei 74.4 8.8 0.0003 32.4 7.4 35 95-129 6-43 (150)
52 1tq8_A Hypothetical protein RV 74.1 19 0.00066 31.3 9.8 34 95-128 17-54 (163)
53 3s3t_A Nucleotide-binding prot 74.0 14 0.00046 30.9 8.5 35 96-130 6-43 (146)
54 1jmv_A USPA, universal stress 72.4 20 0.00068 29.7 9.2 34 96-129 3-39 (141)
55 3idf_A USP-like protein; unive 71.2 16 0.00056 30.2 8.3 36 96-131 2-41 (138)
56 3mt0_A Uncharacterized protein 70.2 17 0.00059 34.5 9.2 91 94-214 6-100 (290)
57 2ywr_A Phosphoribosylglycinami 68.3 11 0.00039 35.3 7.3 55 96-157 2-59 (216)
58 3da8_A Probable 5'-phosphoribo 67.3 12 0.00041 35.4 7.1 55 95-158 12-69 (215)
59 2gm3_A Unknown protein; AT3G01 65.6 27 0.00093 30.2 8.9 35 95-129 5-54 (175)
60 3av3_A Phosphoribosylglycinami 61.9 17 0.00058 34.0 7.1 57 95-157 3-61 (212)
61 3fdx_A Putative filament prote 59.8 26 0.00088 29.0 7.3 36 96-131 2-42 (143)
62 2z08_A Universal stress protei 57.2 79 0.0027 25.8 11.3 35 96-130 3-40 (137)
63 3auf_A Glycinamide ribonucleot 52.8 36 0.0012 32.2 7.7 57 95-157 22-80 (229)
64 3mt0_A Uncharacterized protein 51.9 45 0.0015 31.5 8.4 38 94-131 133-180 (290)
65 3o1l_A Formyltetrahydrofolate 48.9 51 0.0017 32.6 8.4 111 65-213 77-191 (302)
66 3iwh_A Rhodanese-like domain p 43.0 33 0.0011 28.0 5.1 31 93-124 54-84 (103)
67 3foj_A Uncharacterized protein 42.1 36 0.0012 27.0 5.1 31 93-124 54-84 (100)
68 2ejb_A Probable aromatic acid 41.3 37 0.0013 31.2 5.7 31 96-127 2-35 (189)
69 3lqk_A Dipicolinate synthase s 40.9 20 0.00067 33.5 3.7 38 94-132 6-47 (201)
70 3p9x_A Phosphoribosylglycinami 40.4 65 0.0022 30.2 7.2 55 95-157 2-60 (211)
71 3n0v_A Formyltetrahydrofolate 40.2 1.1E+02 0.0039 29.7 9.3 111 65-213 62-176 (286)
72 3mcu_A Dipicolinate synthase, 39.9 31 0.0011 32.3 5.0 38 94-132 4-45 (207)
73 3eme_A Rhodanese-like domain p 39.5 41 0.0014 26.8 5.1 31 93-124 54-84 (103)
74 3olq_A Universal stress protei 38.5 98 0.0034 29.3 8.5 25 192-216 255-279 (319)
75 3tqr_A Phosphoribosylglycinami 37.9 78 0.0027 29.7 7.4 85 96-213 6-93 (215)
76 3loq_A Universal stress protei 37.4 66 0.0023 30.3 7.0 35 95-129 22-59 (294)
77 3kcq_A Phosphoribosylglycinami 37.2 49 0.0017 31.0 5.9 55 95-157 8-66 (215)
78 1jkx_A GART;, phosphoribosylgl 36.8 1.1E+02 0.0038 28.4 8.2 54 96-157 1-58 (212)
79 1meo_A Phosophoribosylglycinam 36.6 82 0.0028 29.2 7.3 56 96-157 1-58 (209)
80 3olq_A Universal stress protei 35.3 92 0.0031 29.5 7.7 35 95-129 7-44 (319)
81 3zqu_A Probable aromatic acid 34.1 52 0.0018 30.8 5.4 32 95-127 4-38 (209)
82 4ds3_A Phosphoribosylglycinami 33.8 1.3E+02 0.0044 28.0 8.1 87 96-213 8-96 (209)
83 3g5j_A Putative ATP/GTP bindin 32.5 43 0.0015 27.5 4.3 28 96-124 90-118 (134)
84 2lju_A Putative oxidoreductase 32.4 14 0.00048 31.3 1.1 20 243-262 66-85 (108)
85 3gk5_A Uncharacterized rhodane 31.8 51 0.0018 26.6 4.5 30 94-124 54-83 (108)
86 1efv_B Electron transfer flavo 31.7 2.7E+02 0.0093 26.5 10.3 78 112-215 49-128 (255)
87 1ccw_A Protein (glutamate muta 31.3 1.9E+02 0.0064 24.6 8.3 55 96-157 4-62 (137)
88 2jya_A AGR_C_3324P, uncharacte 30.9 14 0.00049 31.1 0.9 20 243-262 58-77 (106)
89 3lou_A Formyltetrahydrofolate 30.5 2.1E+02 0.0073 27.9 9.5 111 65-213 67-181 (292)
90 1o97_C Electron transferring f 29.0 2.6E+02 0.0088 26.8 9.7 76 113-215 47-124 (264)
91 1e2b_A Enzyme IIB-cellobiose; 28.4 50 0.0017 27.2 3.9 38 95-132 3-43 (106)
92 1tq1_A AT5G66040, senescence-a 27.3 55 0.0019 27.3 4.0 37 93-132 80-117 (129)
93 2l2q_A PTS system, cellobiose- 27.0 67 0.0023 26.4 4.4 29 96-124 5-36 (109)
94 1wv9_A Rhodanese homolog TT165 26.9 74 0.0025 24.8 4.5 36 93-132 52-87 (94)
95 2jtq_A Phage shock protein E; 26.7 74 0.0025 24.2 4.4 28 94-122 40-67 (85)
96 2fsx_A RV0390, COG0607: rhodan 26.3 75 0.0026 27.1 4.8 36 94-132 79-115 (148)
97 3glc_A Aldolase LSRF; TIM barr 26.2 1.5E+02 0.0051 29.1 7.5 70 119-212 137-211 (295)
98 3qjg_A Epidermin biosynthesis 25.7 77 0.0026 28.7 4.9 36 96-132 6-44 (175)
99 1w8s_A FBP aldolase, fructose- 24.7 2.3E+02 0.0078 27.0 8.4 75 116-212 102-181 (263)
100 1p3y_1 MRSD protein; flavoprot 24.4 56 0.0019 30.1 3.8 33 95-128 8-43 (194)
101 3flh_A Uncharacterized protein 24.4 87 0.003 25.8 4.7 28 94-122 70-99 (124)
102 3nhv_A BH2092 protein; alpha-b 23.9 1E+02 0.0036 26.2 5.3 36 93-131 70-107 (144)
103 3rag_A Uncharacterized protein 23.8 1.5E+02 0.0051 28.4 6.7 61 96-158 10-77 (242)
104 2k0z_A Uncharacterized protein 22.5 96 0.0033 25.0 4.5 36 94-132 55-90 (110)
105 1iuk_A Hypothetical protein TT 22.3 1.4E+02 0.0048 25.5 5.8 100 98-211 17-125 (140)
106 3d1p_A Putative thiosulfate su 20.5 98 0.0034 25.9 4.3 29 93-122 89-117 (139)
107 1gmx_A GLPE protein; transfera 20.4 1.1E+02 0.0037 24.4 4.4 30 94-124 57-87 (108)
108 2bw0_A 10-FTHFDH, 10-formyltet 20.0 1.7E+02 0.006 28.9 6.7 56 96-156 23-79 (329)
No 1
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=100.00 E-value=6.1e-113 Score=895.56 Aligned_cols=392 Identities=49% Similarity=0.866 Sum_probs=371.2
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
+||+||||||+||+|+++||+++ |++|+|+|+|+||. +|++.|+++|+++||++|+++|++++|.++++.|++++++.
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~-G~eViavt~d~Gq~-~Ele~A~~vA~~lGi~~~~VvDl~eef~~~v~~p~i~~na~ 92 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK-DDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAM 92 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCC-CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTTCC
T ss_pred CCEEEEeCCcHHHHHHHHHHHHC-CCeEEEEEEEcCCH-HHHHHHHHHHHHcCCceEEEEecHHHHHHhhhhHHHhcCCc
Confidence 58999999999999999999998 99999999999996 78999999999999977999999999999999999999999
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEecccc--C--C-CCCHHHHH
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWRE--W--D-IQGREDAI 250 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~--~--~-l~sKeEi~ 250 (493)
|+++|++++++||+++++.+.++|+++||++||||||+++|||++|+.++.++.|++++++||++ + + + +|+|++
T Consensus 93 yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~~~al~p~~~IiaPl~d~~~l~~~l-sK~Eir 171 (421)
T 1vl2_A 93 YEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKFK-GRTDLI 171 (421)
T ss_dssp BTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHCTTSEEECGGGCHHHHHHTC---CHHH
T ss_pred ccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHHHHHHHhcCCCCeEEcccCchhhccccC-CHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999999998 3 3 3 799999
Q ss_pred HHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCe---
Q 011097 251 EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGK--- 327 (493)
Q Consensus 251 ~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~--- 327 (493)
+||+++|||+..+++||||+|+||||+|+|||+|||||++||+++|.||++|+++||+|++++|+|++|.||+|||+
T Consensus 172 ~~A~e~Glp~~~t~~kp~S~d~nl~~~s~E~g~ledp~~~~~~~~~~~t~~p~~ap~~p~~v~i~Fe~G~pv~ing~~~~ 251 (421)
T 1vl2_A 172 NYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDPAHIPDEDVFTWTVSPKDAPDEETLLEIHFENGIPVKVVNLKDG 251 (421)
T ss_dssp HHHHHHTCCCCSSCCCSSEEEECSSCEEEESGGGGSTTSCCCGGGCCSSCCTTTSCSSCEEEEEEEETTEEEEEEETTTC
T ss_pred HHHHHcCCCcccCCCCCCcCCCCeecccccccccCCccccCChhhhhccCChhHCCCCCeEEEEEEEcceEEEEecccCC
Confidence 99999999998778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ecChHHHHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHh
Q 011097 328 --KLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELV 405 (493)
Q Consensus 328 --~l~~~~~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lv 405 (493)
.+++.+++.+||+|||+|||||+|+||||+|||||||||||||+|||++||++||++||||+++++|++++++||++|
T Consensus 252 ~~~~~~~~li~~lN~i~g~~GiGr~d~vEnr~vg~KsR~~yE~Pg~~iL~~Ah~~le~~~l~r~~~~~k~~~~~~~~~lv 331 (421)
T 1vl2_A 252 TEKTDPLELFEYLNEVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMDKEVMHLRDMLAPKFAELI 331 (421)
T ss_dssp CEECSHHHHHHHHHHHHHHTTCCEEEEEEECSSSSEEEEEEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhcCcCeeeeecccccccccceeecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCccHHHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHH
Q 011097 406 YAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRV 485 (493)
Q Consensus 406 y~G~w~~p~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~ 485 (493)
|+|+||||+|++|++||+++|++|||+|+|+||||+++++||+||+|||+++++||++.+.|+|.||+|||+||||++++
T Consensus 332 y~G~w~~p~~~~l~a~i~~~q~~V~G~V~~~l~kG~~~~~g~~s~~sly~~~~~s~~~~~~~~~~da~Gfi~~~~l~~~~ 411 (421)
T 1vl2_A 332 YNGFWFSPEMEFLLAAFRKAQENVTGKVTVSIYKGNVMPVARYSPYSLYNPELSSMDVEGGFDATDSKGFINIHALRLKV 411 (421)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEECSSSTTCC--------CCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCcCccHHHHHHHHHHHHHhCcceEEEEEEEECCeEEEEeeeCCccccCcccCccccCCCCChHHhhHHHHHccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHh
Q 011097 486 RAMLE 490 (493)
Q Consensus 486 ~~~~~ 490 (493)
+++.+
T Consensus 412 ~~~~~ 416 (421)
T 1vl2_A 412 HQLVK 416 (421)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88755
No 2
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=100.00 E-value=2.7e-104 Score=838.03 Aligned_cols=387 Identities=28% Similarity=0.479 Sum_probs=368.2
Q ss_pred CCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHH
Q 011097 92 RGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCL 170 (493)
Q Consensus 92 ~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i 170 (493)
+.+++||+||||||+||+++++||+++ |++|+|+|+|+||. .+|++.++++|+++|+++++++|++++|.++ +.|++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e~-G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~eef~~~-v~p~i 84 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAE-GIAAI 84 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHHHHHH-HHHHH
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHc-CCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeChHHHHHH-hHHHH
Confidence 456789999999999999999999998 99999999999995 4689999999999999779999999999988 55999
Q ss_pred HhCccc--cCc--ccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccC---C-
Q 011097 171 RAGAIY--ERK--YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW---D- 242 (493)
Q Consensus 171 ~~~a~y--~g~--y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~---~- 242 (493)
++++.| +++ |+++++++|+++++.+.++|++.||++||||||+++|||+||+.++.++.|.+++++||+++ .
T Consensus 85 ~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq~rf~~~~~al~p~l~viaPlr~~~ll~~ 164 (455)
T 1k92_A 85 QCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDE 164 (455)
T ss_dssp HHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHHHHHHHHHCTTCEEECGGGCHHHHHH
T ss_pred HcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHhcCCCCEEECeecccccccc
Confidence 999998 776 99999899999999999999999999999999999999999999988888899999999982 1
Q ss_pred -CCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCC-----chhhhhcccCCCCCCCCCCceeEEEe
Q 011097 243 -IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENE-----PKKDMYMMSVDPEDAPNQPEYIEIGI 316 (493)
Q Consensus 243 -l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~-----~~~~~~~~t~~~~~~p~~~~~~~i~F 316 (493)
+ +|+|+++||+++|||+..+.+||||+|+||||+|||||.||||++. ||+++|.| |+++|++|++++|+|
T Consensus 165 ~l-sK~EI~~yA~~~GIp~~~t~~~pyS~d~nl~g~s~e~g~ledp~~~~~~~~~~~~~~~~---p~~ap~~p~~v~i~F 240 (455)
T 1k92_A 165 LG-GRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFW---DESVKIPAEEVTVRF 240 (455)
T ss_dssp SS-SHHHHHHHHHHTTCCCCCCCCCSSEEEEETTEEEEESGGGGSTTCCGGGCCCSSSCCTT---CTTSCCCCEEEEEEE
T ss_pred CC-CHHHHHHHHHHcCCCcccCCCCCCccCCceEEEEeecccccCccccccccCCcchhhcC---hhhCCCCCeEEEEEE
Confidence 3 7999999999999999877899999999999999999999999997 88888887 999999999999999
Q ss_pred eecccEEecCeec-ChHHHHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHH
Q 011097 317 VSGIPVSVNGKKL-SPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKD 395 (493)
Q Consensus 317 ~~G~pV~inG~~l-~~~~~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~ 395 (493)
++|.||++||+.+ ++++++..||+|||+|||||+|++|||+|||||||||||||+|||++||++||++||||+++++|+
T Consensus 241 e~G~pv~~ng~~~~~~~~li~~ln~i~g~~GiGr~d~venr~vg~KsR~~yE~Pg~~iL~~Ah~~le~~~l~r~~~~~k~ 320 (455)
T 1k92_A 241 EQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYH 320 (455)
T ss_dssp ETTEEEEETTBCCSSHHHHHHHHHHHHHTTTTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred EccEEEeecCcccCCHHHHHHHHHHHhccCceeEEEEEeeEEeceeeceeccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHH-hcCceeeEEEEEEeCceEE-EEeeeCCCCCCccccccccCCC-CCCcccc
Q 011097 396 SLALKYAELVYAGRWFDPLRESIDAFMEN-ITKTTTGSVTLKLYKGSVS-VTGRTSPKSLYRQDISSFESGQ-IYDQADA 472 (493)
Q Consensus 396 ~~~~~~~~lvy~G~w~~p~~~~l~~~i~~-~q~~v~G~V~l~l~kG~~~-~~~~~s~~sly~~~~~s~~~~~-~~~~~~a 472 (493)
+++++||++||+|+||||++++++++|+. +|++|||+|+|+||||+++ ++||+||+|||+++++||++++ .|+|.||
T Consensus 321 ~~~~~~~~lvy~G~w~~p~~~~l~~~i~~~~q~~V~G~V~~~l~kG~~~~~~g~~s~~~ly~~~~~s~~~~~~~~~~~da 400 (455)
T 1k92_A 321 AHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDDR 400 (455)
T ss_dssp HHHHHHHHHHHTTCTTSHHHHHHHHHHHHHTGGGCCEEEEEEECSTTCEEEEEEECTTCCCCTTTSCCSSCCCSSCHHHH
T ss_pred HHHHHHHHHHhCCcccChhHHHHHHHHHHHhhCceEEEEEEEEECCeEEEEEeEECCccccCcccCceecCCCCcChHHc
Confidence 99999999999999999999999999998 9999999999999999999 9999999999999999999976 6999999
Q ss_pred chhHHhhchHHH
Q 011097 473 AGFIRLYGLPMR 484 (493)
Q Consensus 473 ~gfi~~~~~~~~ 484 (493)
+|||+||||++.
T Consensus 401 ~Gfi~~~~l~~~ 412 (455)
T 1k92_A 401 IGQLTMRNLDIT 412 (455)
T ss_dssp HHHHHTTHHHHH
T ss_pred chhHHHhCCchh
Confidence 999999999874
No 3
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-103 Score=824.84 Aligned_cols=392 Identities=45% Similarity=0.840 Sum_probs=374.4
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++||+||+|||+||+++++||+++ |++|+++|+|+|+. +|++.++++|+++|+++++++|++++|.++++.+++++++
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~-G~eV~av~vd~g~~-~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~a 82 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ-GYDVIAYLANIGQK-EDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSA 82 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT-TEEEEEEEEESSCC-CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc-CCEEEEEEEECCcH-HHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHHhCc
Confidence 469999999999999999999998 99999999999996 7899999999999994499999999999888889999999
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccc------cCCCCCHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWR------EWDIQGRED 248 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr------~~~l~sKeE 248 (493)
.|+++|+|+.+.+|+++++.+.++|++.||++|+||||+++|||++|+..+.++.|.+++++||+ ++. +|+|
T Consensus 83 ~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~lg~~~l~p~l~ii~Pl~d~~~ll~~~--sK~E 160 (413)
T 2nz2_A 83 LYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFK--GRND 160 (413)
T ss_dssp CBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHCTTCEEECGGGCHHHHTTCC---CHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHHHHHHhcCCCCceeccccchhhhccCC--CHHH
Confidence 88999999988899999999999999999999999999988999999888888888999999999 542 5999
Q ss_pred HHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCe-
Q 011097 249 AIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGK- 327 (493)
Q Consensus 249 i~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~- 327 (493)
+++||+++|||+..+.+||||+|.||||++++++.|++|++.+|+++|.||++|+++|++|++++|+|++|.||++||+
T Consensus 161 I~~yA~~~Gip~~~~~~~~~S~d~n~~g~s~e~~~Led~~~~~p~~~~~~~~~~~~~p~~~~~~~i~f~~G~pv~~~g~~ 240 (413)
T 2nz2_A 161 LMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVK 240 (413)
T ss_dssp HHHHHHHTTCCCCSSCCCSSCEEECSSCEEECSGGGGSTTSCCCGGGCCSSCCTTTSCSSCEEEEEEEETTEEEEEEETT
T ss_pred HHHHHHHcCCCeecCCCCCCCCChhhhhcchhhhhhhchhhcCchhhhhccCChhHCCCCCeEEEEEEecCceEEEeccc
Confidence 9999999999997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ecChHHHHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHH
Q 011097 328 ----KLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAE 403 (493)
Q Consensus 328 ----~l~~~~~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~ 403 (493)
.+++++++.+||+|||+|||||+|+||||+|||||||||||||+|||++||++||++||||+++++|++++++||+
T Consensus 241 ~~~~~~~~~~~~~~ln~~~g~~giGr~d~ve~r~vg~ksr~~ye~p~~~~l~~ah~~le~~~l~~~~~~~k~~~~~~~~~ 320 (413)
T 2nz2_A 241 DGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAE 320 (413)
T ss_dssp TCCEECSHHHHHHHHHHHHHHHTCCEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhcccceeccccccccccccceeceeecChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCccHHHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHH
Q 011097 404 LVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPM 483 (493)
Q Consensus 404 lvy~G~w~~p~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~ 483 (493)
+||+|+||||+|++|++||+++|++|||+|+|+||||+++++||+||+|||+++++||++.+.|+|.||+|||+||||++
T Consensus 321 ~~y~g~w~~p~~~~~~~~~~~~q~~v~G~v~~~l~kg~~~~~g~~s~~~ly~~~~~~~~~~~~~~~~~~~gfi~~~~l~~ 400 (413)
T 2nz2_A 321 LVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRL 400 (413)
T ss_dssp HHHHTCSSSHHHHHHHHHHHHHTTTCCEEEEEEEETTEEEEEEEECTTCCCCHHHHC-CCCCSCCHHHHHHHHHHHHHHH
T ss_pred HHhCCcCccHHHHHHHHHHHHhhCcceEEEEEEEECCeEEEEeeeCCccccCccccccccCCCCChHHhhHHHHHccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHh
Q 011097 484 RVRAMLE 490 (493)
Q Consensus 484 ~~~~~~~ 490 (493)
+++++.+
T Consensus 401 ~~~~~~~ 407 (413)
T 2nz2_A 401 KEYHRLQ 407 (413)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9987644
No 4
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=100.00 E-value=1.4e-100 Score=802.83 Aligned_cols=395 Identities=60% Similarity=1.037 Sum_probs=365.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI 175 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~ 175 (493)
+||+||||||+||+++++||++.+|++|+++|+|+|+ .++++.++++|+++|+++++++|++++|.++++.+.+++++.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~g~~V~av~vd~g~-~~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~~~ 79 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQ-GEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAV 79 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSC-SSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCC
T ss_pred CcEEEEEeChHHHHHHHHHHHHhhCCcEEEEEEeCCC-HHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHhhHHHHHcCCc
Confidence 4899999999999999999998779999999999999 578999999999999966999999999998888899999888
Q ss_pred ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHHH
Q 011097 176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKK 255 (493)
Q Consensus 176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~ 255 (493)
|+++|+++++.+|+++++.+.++|++.|+++|+|||++++|||.+|+..+..+.|.+++++||++|.+.+|+|+++||++
T Consensus 80 ~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~g~~~l~p~l~ii~PL~~~~~~tK~eI~~ya~~ 159 (400)
T 1kor_A 80 YEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEA 159 (400)
T ss_dssp BTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHCTTCEEECGGGTCCCCSHHHHHHHHHH
T ss_pred cccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHHHHHHhcCCCCEEEEeecccccCCHHHHHHHHHH
Confidence 89999999989999999999999999999999999999999999998888888899999999999865359999999999
Q ss_pred CCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHHH
Q 011097 256 HNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLL 335 (493)
Q Consensus 256 ~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~i 335 (493)
+|||+..+.+||||+|.|+||+++|++.|++|++.||+++|.||++|+++|++|++++|+|++|.||++||+.+++++++
T Consensus 160 ~gip~~~~~~~pys~d~nllg~s~e~~~Led~~~~~p~~~~~~~~~p~~~~~~~~~~~i~f~~g~~v~~~g~~~~~~~li 239 (400)
T 1kor_A 160 HGIPVPVTQEKPYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239 (400)
T ss_dssp TTCCCC-----CCEEEECSSCEEEESGGGGCTTSCCCTTCCSSSCCGGGSCSSCEEEEEEEETTEEEEETTEECCHHHHH
T ss_pred cCCCcccCCCCCCcCcchhcccchhhhHHHhHHhcCCcccceeecChhHCCCCceEEEEEeecCceEeccCccCCHHHHH
Confidence 99999877789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHH
Q 011097 336 AELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLR 415 (493)
Q Consensus 336 ~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~ 415 (493)
.+||++|++||+||+|++|||+||+||||||||||+|||++||++||++||||+++++|++++++||++||+|+||||+|
T Consensus 240 ~~ln~~~~~~GiGr~d~~e~~~~g~k~r~~ye~p~~~~l~~ah~~le~~~l~~~~~~~k~~~~~~~~~~~y~g~w~~p~~ 319 (400)
T 1kor_A 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPER 319 (400)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred HHHHHHHHhcCCChhhcccccchhhhccccccChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCcCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHhc
Q 011097 416 ESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER 491 (493)
Q Consensus 416 ~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~~ 491 (493)
++|++||+++|++|||+|+|+||||+++++||+||+|||+++++||++++.|+|.||+|||+||||++++++...+
T Consensus 320 ~~~~~~~~~~q~~v~g~v~~~l~~g~~~~~~~~s~~~ly~~~~~~~~~~~~~~~~~~~gfi~~~~~~~~~~~~~~~ 395 (400)
T 1kor_A 320 EALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQDLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 395 (400)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEECTTCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcceEEEEEEEECCeEEEEeeeCCccccCcccCCcccCCCCChHhchHHHHHcCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998899999999999999999999887553
No 5
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.97 E-value=2.2e-32 Score=284.53 Aligned_cols=289 Identities=19% Similarity=0.209 Sum_probs=213.4
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC---------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG---------IKELDGLEEKAKASGACQLVVKDLKEEFVKDY 165 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~---------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~ 165 (493)
++||+||+|||+||++++++|+++ |++|+++|++.++. .++++.++++|+++|| ||+++|++++|.+.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGI-p~~vv~~~~~~~~~v 86 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ-GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGI-PYYSVNFEKEYWDRV 86 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTC-CEEEEECHHHHHHHT
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHc-CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCC-cEEEEeChHHHHHHH
Confidence 479999999999999999999997 99999999999853 2578999999999999 899999999998887
Q ss_pred hhhHHHhCccccCcccccc-cCcHHHHHHHHHHHHHHcCCcEeeeCCCCC-------------CCChHHHHHHHHhcCCC
Q 011097 166 IFPCLRAGAIYERKYLLGT-SMARPVIAKAMVDVAREVGADAVAHGCTGK-------------GNDQVRFELTFFALNPE 231 (493)
Q Consensus 166 i~~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~-------------gnD~~r~~~~~~~l~p~ 231 (493)
+.+++... ..|++|++| .|+|.+++..+.++|+++|+++|||||+.+ +.|..+.+++++...+.
T Consensus 87 ~~~~l~~y--~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~ 164 (376)
T 2hma_A 87 FEYFLAEY--RAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQ 164 (376)
T ss_dssp HHHHHHHH--HTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCH
T ss_pred HHHHHHHH--hcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhccccccccchhccCCCh
Confidence 77777642 146788888 577888899999999999999999999753 11222334444332221
Q ss_pred ---CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCC
Q 011097 232 ---LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQ 308 (493)
Q Consensus 232 ---i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~ 308 (493)
.++++||.++ +|+|+++||+++|+|+. +||.|++.||.+.. . . ..|..... +
T Consensus 165 ~~l~~~i~PL~~~---~K~eVr~~A~~~gl~~~---~k~~s~~~cf~~~~---~---------~-~~fL~~~~----~-- 219 (376)
T 2hma_A 165 EQLQKTMFPLGHL---EKPEVRRLAEEAGLSTA---KKKDSTGICFIGEK---N---------F-KNFLSNYL----P-- 219 (376)
T ss_dssp HHHTTEECTTTTC---CHHHHHHHHHHTTCTTT---TCCCCCSCTTTTTS---C---------H-HHHHHTTS----C--
T ss_pred hhcCcEEecCcCC---CHHHHHHHHHHcCCCcc---cCCCCCCccccCch---h---------H-HHHHHHHh----h--
Confidence 5899999986 79999999999999974 58999988875411 0 0 01111000 1
Q ss_pred CceeEEEeeecccEEecCeecChHHHHHHHHHhhhccccceeec----ccceee---eeecceeEecchHHHHHHHHHHH
Q 011097 309 PEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDM----VENRLV---GMKSRGVYETPGGTILFSAVQEL 381 (493)
Q Consensus 309 ~~~~~i~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~GiG~~d~----ienr~v---G~K~r~vyEaPg~~iL~~Ah~~L 381 (493)
..+|.+|+++|++++.|.++. .||||||+|||+... -+.++| ..+.+.|+..||. -|.+|
T Consensus 220 -------~~pG~~vd~~g~~~g~H~g~~-~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v~v~~~~-----~~~~l 286 (376)
T 2hma_A 220 -------AQPGRMMTVDGRDMGEHAGLM-YYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGF-----YHDSL 286 (376)
T ss_dssp -------CCCEEEEETTCCEEEEESCGG-GCCTTCBSCTTTTC----CCSCEEEEEEEGGGTEEEEEEST-----TCGGG
T ss_pred -------cCCCCEEcCCCCEEEEecCee-eeccCcccccCCCcccCCCCceEEEEEEecCCCEEEEEcCC-----ChHHh
Confidence 135888899999999999887 699999999997542 356665 6678899999886 46666
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHhhcccCcc--HHH--HHHHHHHHHhcCceeeEEEEEEeCceEEE
Q 011097 382 ESLTLDRETMQVKDSLALKYAELVYAGRWFD--PLR--ESIDAFMENITKTTTGSVTLKLYKGSVSV 444 (493)
Q Consensus 382 e~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~--p~~--~~l~~~i~~~q~~v~G~V~l~l~kG~~~~ 444 (493)
..-.+....+. |.+ |.. ..+.+-+++.|+.+.++|+.. .|.+.|
T Consensus 287 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~k~r~~~~~~~~~~~~~--~~~~~v 334 (376)
T 2hma_A 287 MSTSLEASQVH-----------------FTREMPEEFTLECTAKFRYRQPDSKVTVHVK--GEKTEV 334 (376)
T ss_dssp EEEEEEEEEEE-----------------ESSCCCSSEEEEEEEESSTTSCCEEEEEEEC--SSCEEE
T ss_pred ccceEEeecce-----------------ecCCCCCCCCeEEEEEEccCCCCCCEEEEEe--CCEEEE
Confidence 66665444332 332 110 123455788999999888654 554544
No 6
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.97 E-value=2.4e-32 Score=284.63 Aligned_cols=287 Identities=18% Similarity=0.200 Sum_probs=197.4
Q ss_pred CCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC---------cccHHHHHHHHHHcCCceEEEEcCcHH
Q 011097 90 GRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG---------IKELDGLEEKAKASGACQLVVKDLKEE 160 (493)
Q Consensus 90 ~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~---------~ed~e~a~~~A~~LGI~~~~VvDl~ee 160 (493)
.|-.+++||+||+|||+||++++++|+++ |++|+++|++.+.. .++++.++++|++||| |++++|++++
T Consensus 12 ~~~~~~~kVvVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGI-p~~vvd~~~~ 89 (380)
T 2der_A 12 SMSETAKKVIVGMSGGVDSSVSAWLLQQQ-GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGI-ELHTVNFAAE 89 (380)
T ss_dssp -----CCEEEEECCSCSTTHHHHHHHHTT-CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTC-CEEEEECHHH
T ss_pred CCCCCCCEEEEEEEChHHHHHHHHHHHHc-CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCC-cEEEEeCcHH
Confidence 35566789999999999999999999997 99999999998753 2578999999999999 8999999999
Q ss_pred HHHhhhhhHHHhCccccCcccccc-cCcHHHHHHHHHHHHHH-cCCcEeeeCCCCC------------CCChHHHHHHHH
Q 011097 161 FVKDYIFPCLRAGAIYERKYLLGT-SMARPVIAKAMVDVARE-VGADAVAHGCTGK------------GNDQVRFELTFF 226 (493)
Q Consensus 161 f~~~~i~~~i~~~a~y~g~y~~~~-~~~R~l~~~~l~~~A~e-~Gad~IAtGhn~~------------gnD~~r~~~~~~ 226 (493)
|.+.++.+++.... .|++|++| .|+|.++++.+.++|++ +||++|||||+.+ +.|..+.+++++
T Consensus 90 f~~~v~~~~~~ey~--~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L 167 (380)
T 2der_A 90 YWDNVFELFLAEYK--AGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFL 167 (380)
T ss_dssp HHHHTHHHHHHHHH--TTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGG
T ss_pred HHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhcccccccccceee
Confidence 98887777776521 46678888 46677789999999999 9999999999763 223333334433
Q ss_pred hcCC--C-CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCC
Q 011097 227 ALNP--E-LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPE 303 (493)
Q Consensus 227 ~l~p--~-i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~ 303 (493)
...+ + .++++||.++ +|+|+++||+++|+|+. +||.|++.||++... . ..|.....
T Consensus 168 ~~l~~~~l~~~i~PL~~~---~K~eVr~~A~~~Gl~~~---~kp~s~~~cf~~~~~------------~-~~fL~~~~-- 226 (380)
T 2der_A 168 YTLSHEQIAQSLFPVGEL---EKPQVRKIAEDLGLVTA---KKKDSTGICFIGERK------------F-REFLGRYL-- 226 (380)
T ss_dssp SSCCHHHHHHEECCGGGS---CHHHHHHHHHHTTCC-------------------C------------H-HHHHHTTS--
T ss_pred cCCChhhcceeEccCCCC---CHHHHHHHHHHcCCCCc---cCCCCCCccccCchH------------H-HHHHHHhh--
Confidence 2222 1 5799999986 79999999999999964 589999998865210 0 11110000
Q ss_pred CCCCCCceeEEEeeecccEEecCeecChHHHHHHHHHhhhccccceeec----ccceee---eeecceeEecchHHHHHH
Q 011097 304 DAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDM----VENRLV---GMKSRGVYETPGGTILFS 376 (493)
Q Consensus 304 ~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~GiG~~d~----ienr~v---G~K~r~vyEaPg~~iL~~ 376 (493)
+ ..+|.+|+.+|++++.|.++. .||||||+|||+... -+.++| ..+.+.||..||.
T Consensus 227 --~---------~~pG~~vd~~g~~lg~H~g~~-~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v~v~~~~----- 289 (380)
T 2der_A 227 --P---------AQPGKIITVDGDEIGEHQGLM-YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----- 289 (380)
T ss_dssp --C---------CCCCEEEETTCCEEEECSCST-TCCTTCCTTSCCCCCSSSTTCCEEEEEEETTTTEEEEEEST-----
T ss_pred --h---------hCCCCEEeeCCcEEEEecCce-eeeecccccCCcCcccCCCCccEEEEEEecCCCEEEEECCC-----
Confidence 1 124778899999999999887 699999999996542 356666 6678899999887
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCcc--HH--HHHHHHHHHHhcCceeeEEEE
Q 011097 377 AVQELESLTLDRETMQVKDSLALKYAELVYAGRWFD--PL--RESIDAFMENITKTTTGSVTL 435 (493)
Q Consensus 377 Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~--p~--~~~l~~~i~~~q~~v~G~V~l 435 (493)
-|.+|..-.+....+. |.+ |. ...+.+-|++.|+.+.++|+.
T Consensus 290 ~~~~l~~~~~~~~~~~-----------------w~~~~~~~~~~~~~~k~r~~~~~~~~~~~~ 335 (380)
T 2der_A 290 EHPRLMSVGLIAQQLH-----------------WVDREPFTGTMRCTVKTRYRQTDIPCTVKA 335 (380)
T ss_dssp TCTTTCEEEEEEEEEE-----------------ETTCCCCCSEEEEEEESSTTCCCEEEEEEC
T ss_pred ChHHhccCEEEEeccE-----------------ECCCCCCCCceEEEEEEccCCCCccEEEEE
Confidence 4666666665443332 322 11 112455677888888888743
No 7
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.88 E-value=4.6e-22 Score=192.68 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=121.0
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCce-EEEEcCc--HHHHHhhhhhH-
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQ-LVVKDLK--EEFVKDYIFPC- 169 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~-~~VvDl~--eef~~~~i~~~- 169 (493)
++||+|++|||+||++++++|++. +++|+++|+|+|+. .+|++.++++|+++|+ + |+++|+. ++|..+.+.+.
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~-~~~v~av~~~~g~~~~~e~~~a~~~a~~lgi-~~~~vi~~~~l~~~~~~~l~~~~ 79 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD-YDDVHCITFDYGQRHRAEIEVAQELSQKLGA-AAHKVLDVGLLNELATSSLTRDS 79 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSSSCHHHHHHHHHHHHHHTC-SEEEEEECTHHHHTSHHHHHHTT
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc-CCCEEEEEEECCCCCHHHHHHHHHHHHHhCC-CceEEEeChhHHHHhhhhccccc
Confidence 368999999999999999999997 89999999999985 3688999999999999 6 9999997 55544333221
Q ss_pred --HHhCccccCcccccccCcHHHHHHHH-HHHHHHcCCcEeeeCCCCCCCChH-----------HHHHHHH-hcCCCCeE
Q 011097 170 --LRAGAIYERKYLLGTSMARPVIAKAM-VDVAREVGADAVAHGCTGKGNDQV-----------RFELTFF-ALNPELNV 234 (493)
Q Consensus 170 --i~~~a~y~g~y~~~~~~~R~l~~~~l-~~~A~e~Gad~IAtGhn~~gnD~~-----------r~~~~~~-~l~p~i~i 234 (493)
+..+..+++.++..|..+|+.++..+ .++|++.|+++|+|||+.. |+. .++.... +....+++
T Consensus 80 ~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~--D~~~~~~~r~~~~~~~~~~~~~~~~~~~~i 157 (232)
T 2pg3_A 80 IPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCET--DFSGYPDCRDEFVKALNQAIVLGIARDIRF 157 (232)
T ss_dssp CCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSC--SSSCCGGGSHHHHHHHHHHHHHHHTSCCEE
T ss_pred ccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCcc--ccCCCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 11111224556777777899886555 8999999999999999865 432 1222111 12246899
Q ss_pred EeccccCCCCCHHHHHHHHHHCCC-CC--CCCCCC
Q 011097 235 VAPWREWDIQGREDAIEYAKKHNV-PV--PVTKKS 266 (493)
Q Consensus 235 i~PLr~~~l~sKeEi~~yA~~~GI-p~--~~t~~c 266 (493)
++||.++ +|+|+++||+++|+ |+ ..|..|
T Consensus 158 ~~PL~~~---~K~ei~~~a~~~gl~~~~~~~t~sC 189 (232)
T 2pg3_A 158 ETPLMWL---NKAETWALADYYQQLDTVRYHTLTC 189 (232)
T ss_dssp ECTTTTC---CHHHHHHHHHHTTCHHHHHHHCCCC
T ss_pred EEecCCC---CHHHHHHHHHHcCCCcccccccCCC
Confidence 9999986 79999999999999 63 445566
No 8
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.87 E-value=5.6e-22 Score=201.38 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=134.1
Q ss_pred HHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHc---cCCe-EEEEEEecCCC---cccHHHHH
Q 011097 69 KAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLREN---YGCE-VVCFTADVGQG---IKELDGLE 141 (493)
Q Consensus 69 ~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~---~G~e-Viavtid~Gq~---~ed~e~a~ 141 (493)
|..+.+++++.+ ++++++|+.++++|+||+|||+||++++++|++. +|++ |.++|+|+|+. .++.+.++
T Consensus 2 ~~~~~~~~~~~~----~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~ 77 (317)
T 1wy5_A 2 NPESRVIRKVLA----LQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCK 77 (317)
T ss_dssp CHHHHHHHHHHH----HHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHH
T ss_pred ccHHHHHHHHHH----HHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHH
Confidence 446677888766 8888999999999999999999999999999873 3789 99999999985 36788999
Q ss_pred HHHHHcCCceEEEEcCcH-HHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHH
Q 011097 142 EKAKASGACQLVVKDLKE-EFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVR 220 (493)
Q Consensus 142 ~~A~~LGI~~~~VvDl~e-ef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r 220 (493)
++|+++|+ +++++++.. .+..+ .+ ...+.+||.+++..+.++|++.|+++|+||||.+ |+..
T Consensus 78 ~~a~~lgi-~~~v~~~~~~~~~~~------------~~--~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d--D~~E 140 (317)
T 1wy5_A 78 EFAKERNM-KIFVGKEDVRAFAKE------------NR--MSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN--DLLE 140 (317)
T ss_dssp HHHHHHTC-CEEEEECCHHHHHHH------------TT--CCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH--HHHH
T ss_pred HHHHHcCC-cEEEEEEechhhhcc------------CC--CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh--HHHH
Confidence 99999999 899999863 22211 01 1223568999999999999999999999999865 7764
Q ss_pred HHHH----------HHhcCCC-CeEEeccccCCCCCHHHHHHHHHHCCCCCCC
Q 011097 221 FELT----------FFALNPE-LNVVAPWREWDIQGREDAIEYAKKHNVPVPV 262 (493)
Q Consensus 221 ~~~~----------~~~l~p~-i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~ 262 (493)
.-.+ +.++.+. ..+++||.++ +|+|+++||+.+|+|+..
T Consensus 141 t~l~~l~rg~g~~gl~~~~~~~~~iirPLl~~---~k~eI~~~~~~~gl~~~~ 190 (317)
T 1wy5_A 141 TSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYV---KRSEIEEYAKFKGLRWVE 190 (317)
T ss_dssp HHHHHHHHCCCHHHHHCSCSEETTEECTTTTC---CHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHhCCCcccccCCCCCCCeEECCCccC---CHHHHHHHHHHcCCCeeE
Confidence 2111 1122221 3799999986 799999999999999864
No 9
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.85 E-value=3.1e-21 Score=183.91 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=112.8
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHH--HHhhh-hhHH
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEF--VKDYI-FPCL 170 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef--~~~~i-~~~i 170 (493)
+++|+|++|||+||++++++|++. +++|+++|+|+|+. .+|.+.++++|+++|+ +|+++++++.. ..+.+ .+.+
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-~~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi-~~~~~~~~~~~~~~~~~l~~~~~ 80 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-FEEVETVTFHYNQRHSQEVEVAKSIAEKLGV-KNHLLDMSLLNQLAPNALTRNDI 80 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSCTTCHHHHHHHHHHHTTCC-CEEEEECGGGGGGSTGGGC----
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-CCceEEEEEeCCCCCHHHHHHHHHHHHHhCC-CeEEEeChHHhhhcccccccccc
Confidence 368999999999999999999987 89999999999984 3678999999999999 89999986411 00001 0111
Q ss_pred HhCccccCcccccccCcHHHHH-HHHHHHHHHcCCcEeeeCCCCCCCChHHHH-------HHHHh-----cCCCCeEEec
Q 011097 171 RAGAIYERKYLLGTSMARPVIA-KAMVDVAREVGADAVAHGCTGKGNDQVRFE-------LTFFA-----LNPELNVVAP 237 (493)
Q Consensus 171 ~~~a~y~g~y~~~~~~~R~l~~-~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~-------~~~~~-----l~p~i~ii~P 237 (493)
... ...+..+..|..||.+++ ..+.++|++.|+++|+|||+.+ |+..+. ..+.. ..+.+++++|
T Consensus 81 ~~~-~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~d--d~~~~~~~~~~~~~~l~~~~~~~~~~~~~ii~P 157 (219)
T 3bl5_A 81 EIE-VKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCET--DFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTP 157 (219)
T ss_dssp -----------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC------CCGGGSHHHHHHHHHHHHHHHTSCCEEECT
T ss_pred ccc-ccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEecccc--ccCCCCCCCHHHHHHHHHHHHhccCCCeEEEec
Confidence 110 001345566667999998 7889999999999999999864 554221 11221 2356899999
Q ss_pred cccCCCCCHHHHHHHHHHCCCC
Q 011097 238 WREWDIQGREDAIEYAKKHNVP 259 (493)
Q Consensus 238 Lr~~~l~sKeEi~~yA~~~GIp 259 (493)
|.++ +|+|+++||+++|+|
T Consensus 158 L~~~---~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 158 LMWL---NKAETWKLADELGAL 176 (219)
T ss_dssp TTTC---CHHHHHHHHHHTTCH
T ss_pred cccC---CHHHHHHHHHHcCCC
Confidence 9986 799999999999994
No 10
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.85 E-value=3.6e-21 Score=205.19 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=129.2
Q ss_pred hhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecCCC-c---ccHHHHHHHHHHcC
Q 011097 76 SSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVGQG-I---KELDGLEEKAKASG 148 (493)
Q Consensus 76 ~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~Gq~-~---ed~e~a~~~A~~LG 148 (493)
+||++ ++++++|+.++++|+||+|||+||++++++|++. .|++|+++|+|+|+. . ++.+.++++|+++|
T Consensus 3 ~kv~~----~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 3 DKVRA----FIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp SHHHH----HHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHH----HHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 45544 8889999999999999999999999999999872 389999999999985 2 57889999999999
Q ss_pred CceEEEEcCc-HHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHH--H
Q 011097 149 ACQLVVKDLK-EEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELT--F 225 (493)
Q Consensus 149 I~~~~VvDl~-eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~--~ 225 (493)
+ +++++++. ..+.++ .+ ...+..||.+++..+.++|++.|+++|+||||.+ |+...-.+ +
T Consensus 79 i-~~~v~~~~~~~~~~~------------~~--~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d--D~aEt~L~~l~ 141 (464)
T 3a2k_A 79 I-LCETAQIDVPAFQRS------------AG--LGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD--DQVETILMRLV 141 (464)
T ss_dssp C-EEEEEECCCHHHHTT------------TT--CCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH--HHHHHHHHHHH
T ss_pred C-cEEEEEechhhhhhc------------cC--CCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH--HHHHHHHHHHH
Confidence 9 89999886 222211 01 1234567999999999999999999999999865 87642111 1
Q ss_pred Hh--------cCC-----CCeEEeccccCCCCCHHHHHHHHHHCCCCCCC
Q 011097 226 FA--------LNP-----ELNVVAPWREWDIQGREDAIEYAKKHNVPVPV 262 (493)
Q Consensus 226 ~~--------l~p-----~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~ 262 (493)
.+ +.+ ...+++||.++ +|+|+.+||+.+|+|+..
T Consensus 142 rG~g~~gL~gm~~~~~~~~~~iiRPLl~~---~k~eI~~ya~~~gl~~~~ 188 (464)
T 3a2k_A 142 RGSTSKGYAGIPVKRPFHGGYLIRPFLAV---SRAEIEAYCRQMGLSPRC 188 (464)
T ss_dssp HCCCSSSTTCSCSEEECSSSEEECGGGGS---CHHHHHHHHHHTCCSSCS
T ss_pred cCCCcccccCCCccccCCCCEEECCCccC---cHHHHHHHHHHcCCCeEE
Confidence 11 122 15799999986 799999999999999865
No 11
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.84 E-value=5.5e-21 Score=193.71 Aligned_cols=181 Identities=18% Similarity=0.224 Sum_probs=127.3
Q ss_pred hHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHH-HH
Q 011097 67 EPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEE-KA 144 (493)
Q Consensus 67 ~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~-~A 144 (493)
-++|++...+++++ .++ ++||+||+|||+||++++++|++.+|++|+++|+|.|+. .++.+.+++ +|
T Consensus 3 ~~~~~~~~~~~ir~----~v~-------~~kvlvalSGGvDSsvla~ll~~~~g~~v~av~vd~g~~~~~e~~~~~~~~a 71 (308)
T 2dpl_A 3 WGRFVEEKVREIRE----TVG-------DSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEFVVKTFR 71 (308)
T ss_dssp HHHHHHHHHHHHHH----HHT-------TSCEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCCCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HhC-------CCCEEEEEeChHHHHHHHHHHHHhhCCCEEEEEEcCCCCChHHHHHHHHHHH
Confidence 36788887777654 332 368999999999999999999886689999999999983 467788888 55
Q ss_pred HHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHH
Q 011097 145 KASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELT 224 (493)
Q Consensus 145 ~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~ 224 (493)
+++|+ +++++++.+.|.+.. ......+ ..|..|+..++..+.++|+++|+++|++||+.+ |+......
T Consensus 72 ~~lgi-~~~vv~~~~~f~~~l-----~~~~~pe----~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~d--D~~Et~~~ 139 (308)
T 2dpl_A 72 DEFGM-NLHYVDAQDRFFSAL-----KGVTDPE----EKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAP--DWIESQGK 139 (308)
T ss_dssp TTTCC-EEEEEECHHHHHHHT-----TTCCCHH----HHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC----------
T ss_pred HHcCC-cEEEEECCHHHHHhh-----hCCCCHH----HHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCc--cchhhccc
Confidence 78999 899999987665431 1100000 011123456778899999999999999999874 66543222
Q ss_pred HHhc--------CCCCeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCcc
Q 011097 225 FFAL--------NPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNL 274 (493)
Q Consensus 225 ~~~l--------~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl 274 (493)
+.++ ...+.+++||+++ +|+|+++||+++|+|+.....||++. .||
T Consensus 140 iks~~~~~~l~~~~~~~virPL~~l---~K~EI~~~a~~~glp~~i~~~~P~~~-~~L 193 (308)
T 2dpl_A 140 IKSHHNVGGLPEKLNLKLIEPLRDL---YKDEVRELAKFLGLPEKIYNRMPFPG-PGL 193 (308)
T ss_dssp -------------CCCEEECTTTTC---CHHHHHHHHHHTTCCHHHHTCCCCCT-TGG
T ss_pred hhhhhccccCCccCCCeEEEEcccC---CHHHHHHHHHHhCCCceeeecCCCCc-ccc
Confidence 2221 1247899999986 79999999999999974445677663 355
No 12
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=5e-20 Score=175.70 Aligned_cols=148 Identities=20% Similarity=0.170 Sum_probs=111.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++||+||+|||+||++++++|++. |++|.++|+|+|+.. +++.++++|+.+|+ +|+++++.++|....+.++...+
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~~-g~~v~~~~v~~~~~~-~~~~~~~~a~~lgi-~~~~~~~~~~~~~~~~~~~~~~~- 81 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKKL-GYNPHLITINFGVIP-SYKLAEETAKILGF-KHKVITLDRKIVEKAADMIIEHK- 81 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHT-TEEEEEEEEECSSSC-TTHHHHHHHHHHTC-EEEEEECCTHHHHHHHHHHHHHS-
T ss_pred CCeEEEEEECcHHHHHHHHHHHHc-CCCeEEEEEeCCCch-HHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHHHHhcC-
Confidence 468999999999999999999886 999999999999864 78999999999999 89999998877665555554332
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHH--HHHHHHhcCC--CCeEEeccccCCCCCHHHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVR--FELTFFALNP--ELNVVAPWREWDIQGREDAI 250 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r--~~~~~~~l~p--~i~ii~PLr~~~l~sKeEi~ 250 (493)
.++..|..+++..+.++|+ |+++|+|||+.+ |+.. ....+.++.+ .+.+++||..+ +|+|++
T Consensus 82 -------~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~d--D~~et~~~~gl~~~~~~~~~~iirPLl~~---~k~eI~ 147 (203)
T 3k32_A 82 -------YPGPAIQYVHKTVLEILAD--EYSILADGTRRD--DRVPKLSYSEIQSLEMRKNIQYITPLMGF---GYKTLR 147 (203)
T ss_dssp -------SSHHHHHHHHHHHHHHHTT--TCSEEECCCCTT--CCSSCCCHHHHHHHHHHHTCEEECGGGGC---CHHHHH
T ss_pred -------CCccHHHHHHHHHHHHHhc--CCCEEEECCCcc--cchhhcchhhccCcccccCCeEEeccCCC---CHHHHH
Confidence 1111122344456666776 999999999876 5542 1112222221 47899999876 799999
Q ss_pred HHHHHCCCCCC
Q 011097 251 EYAKKHNVPVP 261 (493)
Q Consensus 251 ~yA~~~GIp~~ 261 (493)
+||+++ +++.
T Consensus 148 ~~a~~~-l~~~ 157 (203)
T 3k32_A 148 HLASEF-FILE 157 (203)
T ss_dssp HHHHHH-EEEE
T ss_pred HHHHHh-CCcc
Confidence 999998 8764
No 13
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.76 E-value=2e-18 Score=182.57 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=115.6
Q ss_pred CCCCCCCEEEEEEcCChHHHHHHHHHHHc----cCCeEEEEEEecCCCc---ccHHHHHHHHHHcCCceEEEEcCcHHHH
Q 011097 90 GRRGKLNKVVLAYSGGLDTSVIVPWLREN----YGCEVVCFTADVGQGI---KELDGLEEKAKASGACQLVVKDLKEEFV 162 (493)
Q Consensus 90 ~l~~~~~KVvVA~SGG~DSsvll~~L~e~----~G~eViavtid~Gq~~---ed~e~a~~~A~~LGI~~~~VvDl~eef~ 162 (493)
.|+.++++|+||+|||+||++++++|++. .|++|+++|+|+|+.. ++.+.++++|+++|+ +++++++...
T Consensus 8 ~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi-~~~v~~~~~~-- 84 (433)
T 1ni5_A 8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQV-PLVVERVQLA-- 84 (433)
T ss_dssp HHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTC-CEEEECCCCC--
T ss_pred HhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCC-cEEEEEecCC--
Confidence 34566789999999999999999999872 3899999999999852 467899999999999 8999988532
Q ss_pred HhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHH------------hcCC
Q 011097 163 KDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFF------------ALNP 230 (493)
Q Consensus 163 ~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~------------~l~p 230 (493)
. .+ ...+..||.+++..+.++|+ ++++|+||||.+ |+.. +.+. ++.+
T Consensus 85 ---------~----~~--~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~d--D~aE--t~L~~l~RG~g~~gL~gm~~ 143 (433)
T 1ni5_A 85 ---------Q----EG--LGIEAQARQARYQAFARTLL--PGEVLVTAQHLD--DQCE--TFLLALKRGSGPAGLSAMAE 143 (433)
T ss_dssp ---------C----SS--STTTTHHHHHHHHHHHHTCC--TTEEEECCCCHH--HHHH--HHHHHHTTTCCTTGGGCCCS
T ss_pred ---------C----CC--CCHHHHHHHHHHHHHHHHHh--hCCeEEeeccch--HHHH--HHHHHHHcCCCcccccCCCC
Confidence 0 11 12345679999999999986 499999999865 8764 2221 1222
Q ss_pred -----CCeEEeccccCCCCCHHHHHHHHHHCCCCCCC
Q 011097 231 -----ELNVVAPWREWDIQGREDAIEYAKKHNVPVPV 262 (493)
Q Consensus 231 -----~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~ 262 (493)
...+++||.++ +|+|+++||+.+|+|+..
T Consensus 144 ~~~~~~~~iiRPLl~~---~k~eI~~y~~~~gl~~~~ 177 (433)
T 1ni5_A 144 VSEFAGTRLIRPLLAR---TRGELVQWARQYDLRWIE 177 (433)
T ss_dssp EEEETTEEEECGGGSC---CHHHHHHHHHHTTCCCBC
T ss_pred ccccCCceEEccCccC---CHHHHHHHHHHcCCCeEE
Confidence 25799999986 799999999999999865
No 14
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.76 E-value=3.1e-18 Score=184.23 Aligned_cols=159 Identities=25% Similarity=0.304 Sum_probs=117.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
+||+||+|||+||+|++++|++. |++|+|+|+|.|. ..++.+.++++|+++|+ +++++|+++.|.+.. ....
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~-g~~v~av~vd~g~~~~~e~~~v~~~~~~lgi-~~~vv~~~~~f~~~l-----~g~~ 282 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA-GVDHLAVFVDHGLLRLGEREEVEGALRALGV-NLLVVDAKERFLKAL-----KGVE 282 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH-TCEEEEEEEECSCSCTTHHHHHHHHHHHTTC-CEEEEECHHHHHHHH-----TTCC
T ss_pred ccEEEEecCCcchHHHHHHHHHc-CCeEEEEEEeCCCCChHHHHHHHHHHHHhCC-CEEEEECcHHHHHhh-----cCCC
Confidence 79999999999999999999998 9999999999997 35788999999999999 899999987775431 1100
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHc-CCcEeeeCCCCCCCChHHHHH-----------HHHhcC--CCCeEEecccc
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREV-GADAVAHGCTGKGNDQVRFEL-----------TFFALN--PELNVVAPWRE 240 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~-Gad~IAtGhn~~gnD~~r~~~-----------~~~~l~--p~i~ii~PLr~ 240 (493)
..+ ..|..|+..+++.+.++|+++ |+++|++||+.. |+..... .+..+. ..+.+++||++
T Consensus 283 ~pe----~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~--D~~Et~~~g~~~~iks~~~l~~l~~~~~~~ii~PL~~ 356 (503)
T 2ywb_A 283 DPE----EKRKIIGREFVAAFSQVARERGPFRFLAQGTLYP--DVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFRL 356 (503)
T ss_dssp CHH----HHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHH--HHHC-----------------CCCSSCCCEEECTTTT
T ss_pred ChH----HHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCc--cchhhccCCcccccccccccccccccccCceEehhhc
Confidence 000 011123445678889999999 999999999764 4432110 011121 13689999998
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 241 WDIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 241 ~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
+ +|+|+++||+++|+|+.....|||..
T Consensus 357 l---~K~EVr~~a~~~glp~~i~~~~P~~~ 383 (503)
T 2ywb_A 357 L---FKDEVRELALLLGLPDTLRLRHPFPG 383 (503)
T ss_dssp C---CHHHHHHHHHHTTCCHHHHSCCCCCT
T ss_pred C---CHHHHHHHHHHcCCChhheecCCCCC
Confidence 6 69999999999999964334677653
No 15
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.76 E-value=4.7e-19 Score=191.67 Aligned_cols=169 Identities=20% Similarity=0.321 Sum_probs=116.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHH-HHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEE-KAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~-~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
+||+||+|||+||+|++++|++.+|++|+|+|+|.|+. .++.+.+.+ +|+++|+ +++++|+.+.|.... ...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~G~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi-~~~vv~~~~~~~~~l-----~g~ 304 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGA-KVICVDAKDRFMKAL-----KGI 304 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHHGGGEEEEEECCSCSCTTHHHHHHHHHTTSSCC-EEEEECCHHHHHSSS-----SSC
T ss_pred CeEEEEEecCcCHHHHHHHHHHHhCCeEEEEEeccCCCChhHHHHHHHHHHHHcCC-cEEEEeChHHHHHhh-----cCC
Confidence 78999999999999999999986699999999999984 356667665 9999999 899999988775431 000
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHH---HH----HHH------hcC--CCCeEEecc
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRF---EL----TFF------ALN--PELNVVAPW 238 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~---~~----~~~------~l~--p~i~ii~PL 238 (493)
.. ....|.+++..+++.+.++|+++|+++||||||.. |+... +. .+. .+. ..+++++||
T Consensus 305 ~~----~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~d--D~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL 378 (527)
T 3tqi_A 305 SD----PEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYP--DVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPL 378 (527)
T ss_dssp CC----HHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHH--HHHCC--------------------------CEECTT
T ss_pred CC----hhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCC--ccccccccCCChhheeeeecccccCcccccCccccch
Confidence 00 00111123455678888999999999999999864 44310 00 011 121 236799999
Q ss_pred ccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccC
Q 011097 239 REWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEG 281 (493)
Q Consensus 239 r~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg 281 (493)
+++ +|+|+++||+++|+|+..+...|++. .|+ ..++.|
T Consensus 379 ~~l---~K~EIr~~a~~lGlp~~~v~~~P~p~-~~l-~~R~~g 416 (527)
T 3tqi_A 379 REL---FKDEVRKLGLELGLPADLIYRHPFPG-PGL-AIRILG 416 (527)
T ss_dssp TTC---CHHHHHHHHHHHTCCHHHHTCCCCCT-TGG-GSSBCS
T ss_pred hcC---CHHHHHHHHHHcCCChhhhccCCCCC-CCc-ceecCC
Confidence 986 79999999999999973323344332 233 344444
No 16
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.73 E-value=1.3e-17 Score=175.31 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=115.0
Q ss_pred CCCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecC-CC-cccHHHHHHHHHHc-----CCceEEEEcCcHHHHHh
Q 011097 92 RGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVG-QG-IKELDGLEEKAKAS-----GACQLVVKDLKEEFVKD 164 (493)
Q Consensus 92 ~~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~G-q~-~ed~e~a~~~A~~L-----GI~~~~VvDl~eef~~~ 164 (493)
+++++||+||+|||+||++++++|++. |++|+|+|+|.+ .. ..+.+.++++|+.+ |+ +++++|+++.+. .
T Consensus 184 i~~~~kvlvalSGGvDS~vll~ll~~~-G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi-~~~vv~~~~~~~-~ 260 (413)
T 2c5s_A 184 VGVGGKVMVLLSGGIDSPVAAYLTMKR-GVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRV-TLHLVPFTEVQK-T 260 (413)
T ss_dssp TTTTEEEEEECCSSSHHHHHHHHHHHB-TEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCE-EEEEEECHHHHH-H
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHHc-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCC-eEEEEECcHHHH-H
Confidence 344679999999999999999999986 999999999975 22 35778899999999 99 899999976543 2
Q ss_pred hhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHH-HHHHHHhc--CCCCeEEeccccC
Q 011097 165 YIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVR-FELTFFAL--NPELNVVAPWREW 241 (493)
Q Consensus 165 ~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r-~~~~~~~l--~p~i~ii~PLr~~ 241 (493)
+ ..+. ..+| .|..||..+++.+.++|++.|+++|+|||+.. |+.. +-..+.++ .....+++||..+
T Consensus 261 i-----~~~~--~~~~--~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~d--D~ae~~l~~l~~~~~~~~~~virPL~~l 329 (413)
T 2c5s_A 261 I-----NKEI--PSSY--SMTVMRRMMMRITERIAEERNALAITTGESLG--QVASQTLDSMHTINEVTNYPVIRPLITM 329 (413)
T ss_dssp H-----HHHS--CGGG--HHHHHHHHHHHHHHHHHHHTTCCEEECCCCSS--STTSCCHHHHHHHGGGCCSCEECTTTTC
T ss_pred H-----HhcC--Cccc--HHHHHHHHHHHHHHHHHHHcCCCEEEEcccch--hhHHHHHHHHhcccccCCCEEEeccCCC
Confidence 1 1111 1122 34457888889999999999999999999875 5431 11222222 2357899999975
Q ss_pred CCCCHHHHHHHHHHCCCC
Q 011097 242 DIQGREDAIEYAKKHNVP 259 (493)
Q Consensus 242 ~l~sKeEi~~yA~~~GIp 259 (493)
+|+|+++||+++|++
T Consensus 330 ---~K~eI~~~a~~~Gl~ 344 (413)
T 2c5s_A 330 ---DKLEIIKIAEEIGTY 344 (413)
T ss_dssp ---CHHHHHHHHHHTTCH
T ss_pred ---CHHHHHHHHHHcCCC
Confidence 799999999999984
No 17
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.72 E-value=5.7e-18 Score=184.22 Aligned_cols=172 Identities=14% Similarity=0.186 Sum_probs=117.3
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHH-HHHHHHc-CCceEEEEcCcHHHHHhhhhhH
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGL-EEKAKAS-GACQLVVKDLKEEFVKDYIFPC 169 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a-~~~A~~L-GI~~~~VvDl~eef~~~~i~~~ 169 (493)
.+.+||+||+|||+||+|++++|++.+|++|+|+++|.|+. ..+.+.+ +.+|+.+ |+ +++++|+++.|.... .
T Consensus 253 g~~~~vvvalSGGvDSsv~a~ll~~~~G~~v~~v~vd~g~~~~~e~~~~~~~~~~~l~gi-~~~~vd~~~~f~~~l-~-- 328 (556)
T 3uow_A 253 KHDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDM-NITKIDASENFLSNL-Q-- 328 (556)
T ss_dssp TTTCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHHHHCTTS-EEEEEECHHHHHHHT-T--
T ss_pred CCCceEEEEcccCCCHHHHHHHHHHHhCCeEEEEEEecCCCChHHHHHHHHHHHHhcCCC-CeEEeccHHHHHHhh-c--
Confidence 44689999999999999999999887799999999999984 3456666 6689999 99 899999998887542 0
Q ss_pred HHhCccccCcccccccCcHHHHHHHHHHHHHHcCC----cEeeeCCCCCCCChHHH------------HHHHHhcC--CC
Q 011097 170 LRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGA----DAVAHGCTGKGNDQVRF------------ELTFFALN--PE 231 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Ga----d~IAtGhn~~gnD~~r~------------~~~~~~l~--p~ 231 (493)
.-...+ ..+.+++..++..+.++|+++|+ ++||+||+.. |.... ...+..+. -.
T Consensus 329 --g~~~pe----~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~--D~ies~~~~g~~~~iks~~n~~gl~~~~~ 400 (556)
T 3uow_A 329 --GVTDPE----QKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYP--DIIESKCSKNLSDTIKTHHNVGGLPKNLK 400 (556)
T ss_dssp --TCCCHH----HHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHH--HHHHHSCC-------------------CC
T ss_pred --CCCChH----HHHHHHHHHHHHHHHHHHHHcCCcccccccccCccCh--HHHhhcccccccceecccccccccccccc
Confidence 000000 00001223356788999999997 8999999753 33211 00111121 14
Q ss_pred CeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccccccC
Q 011097 232 LNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEG 281 (493)
Q Consensus 232 i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg 281 (493)
+++++||+++ +|+|++++|+++|+|...+...|+.. .|| ++++-|
T Consensus 401 ~~li~PL~~l---~K~EVr~la~~lGlp~~~~~r~P~p~-p~l-a~Ri~g 445 (556)
T 3uow_A 401 FKLFEPFKYL---FKDDVKTLSRELNLPEEITNRHPFPG-PGL-AIRVIG 445 (556)
T ss_dssp CEEECTTTTC---CHHHHHHHHHTTTCCHHHHHCCCCCT-TTT-TTTBCS
T ss_pred cceEeecccC---cHHHHHHHHHHcCCCHHHhCCCCCCC-CCc-cccccC
Confidence 7899999986 79999999999999943323333322 234 455544
No 18
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.72 E-value=6.2e-18 Score=161.91 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
+++|+||+|||+||+|++++|.+. +.+|.++|+|.|.. .++.+.++++|+++|+ ++++++....+.. .+.. .+
T Consensus 44 ~~~v~Va~SGGkDS~vLL~ll~~~-~~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi-~~~v~~~~~~~~~-~~~~---~g 117 (215)
T 1sur_A 44 PGEYVLSSSFGIQAAVSLHLVNQI-RPDIPVILTDTGYLFPETYRFIDELTDKLKL-NLKVYRATESAAW-QEAR---YG 117 (215)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHH-STTCEEEEEECSCBCHHHHHHHHHHHHHTTC-EEEEEECSSCHHH-HHHH---HC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHh-CCCCeEEEeeCCCCCHHHHHHHHHHHHHhCC-cEEEEeCCCCHHH-HHHh---cC
Confidence 369999999999999999999987 89999999999984 4678899999999999 8999977533221 1110 11
Q ss_pred ccccCccccc-ccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCCh-HHHHHHHHhc--CCCCeEEeccccCCCCCHHHH
Q 011097 174 AIYERKYLLG-TSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQ-VRFELTFFAL--NPELNVVAPWREWDIQGREDA 249 (493)
Q Consensus 174 a~y~g~y~~~-~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~-~r~~~~~~~l--~p~i~ii~PLr~~~l~sKeEi 249 (493)
..+... +.. +.||+.++...+.+++++.|+++|++||+.. |. .|.. +..+ .+...+++||.+| +++|+
T Consensus 118 ~~~~~~-~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~d--d~~~r~~--~~~~~~~~~~~~i~PLl~~---t~~dI 189 (215)
T 1sur_A 118 KLWEQG-VEGIEKYNDINKVEPMNRALKELNAQTWFAGLRRE--QSGSRAN--LPVLAIQRGVFKVLPIIDW---DNRTI 189 (215)
T ss_dssp CGGGSH-HHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTT--SSSTTTT--CCSEEEETTEEEECTTTTC---CHHHH
T ss_pred CCCCCC-ccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehh--hhhhhcC--CCccccCCCEEEEechHhC---CHHHH
Confidence 111110 011 2356677778889999999999999999764 32 1111 0111 1235789999998 79999
Q ss_pred HHHHHHCCCCCC
Q 011097 250 IEYAKKHNVPVP 261 (493)
Q Consensus 250 ~~yA~~~GIp~~ 261 (493)
.+|++++|||+.
T Consensus 190 ~~y~~~~~lp~~ 201 (215)
T 1sur_A 190 YQYLQKHGLKYH 201 (215)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHhCCCCC
Confidence 999999999974
No 19
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.72 E-value=1.1e-17 Score=164.77 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=113.7
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
.++|+|++|||+||+++++++++. +.++++++++.|+ ..++.+.++++|+.+|+ +|+++|+.+.|.. ++ ..+...
T Consensus 29 ~~~vvv~lSGGiDSsv~a~l~~~~-~~~~~av~~~~~~~~~~~~~~a~~~a~~lgi-~~~~v~~~~~~~~-~~-~~~~~~ 104 (249)
T 3fiu_A 29 AEGFVIGLSGGIDSAVAASLAVKT-GLPTTALILPSDNNQHQDMQDALELIEMLNI-EHYTISIQPAYEA-FL-ASTQSF 104 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHT-TSCEEEEECCCTTSCHHHHHHHHHHHHHHTC-EEEECCCHHHHHH-HH-HHTGGG
T ss_pred CCCEEEEecCcHHHHHHHHHHHHh-CCCCEEEEecCCCCCHHHHHHHHHHHHHhCC-CEEEEEChHHHHH-HH-HHHHhh
Confidence 368999999999999999999987 6777799999885 35789999999999999 8999999876643 22 111110
Q ss_pred ccccCcccccc-cCc--HHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc-CCCCeEEeccccCCCCCHHHH
Q 011097 174 AIYERKYLLGT-SMA--RPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL-NPELNVVAPWREWDIQGREDA 249 (493)
Q Consensus 174 a~y~g~y~~~~-~~~--R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l-~p~i~ii~PLr~~~l~sKeEi 249 (493)
.-.+..+|.+ .+| +.+|+..+..+|++.|+.+|+|||. |+.. ..+... .....+++||.++ +|.|+
T Consensus 105 -~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn~----sE~~--~G~~t~~gd~~~~i~PL~~l---~K~eV 174 (249)
T 3fiu_A 105 -TNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNA----CEWY--MGYFTKFGDGAADILPLVNL---KKSQV 174 (249)
T ss_dssp -C------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCH----HHHH--HTCSCTTTTTCCSBCTTTTC---CHHHH
T ss_pred -ccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCCH----HHHh--cCchhccCCCCcceeecccC---cHHHH
Confidence 0001122322 122 7788999999999999999999962 3321 111111 1235689999975 79999
Q ss_pred HHHHHHCCCC--CCCCCCCCCcc
Q 011097 250 IEYAKKHNVP--VPVTKKSIYSR 270 (493)
Q Consensus 250 ~~yA~~~GIp--~~~t~~cpyS~ 270 (493)
+++|+..|+| +. .+|-|.
T Consensus 175 r~lA~~lglp~~i~---~k~psa 194 (249)
T 3fiu_A 175 FELGKYLDVPKNIL---DKAPSA 194 (249)
T ss_dssp HHHHHHTTCCHHHH---HSCCCC
T ss_pred HHHHHHcCCcHHHc---cCCCCC
Confidence 9999999999 42 355565
No 20
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.72 E-value=7.5e-18 Score=165.93 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=113.1
Q ss_pred ccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHH
Q 011097 85 PKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVK 163 (493)
Q Consensus 85 ~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~ 163 (493)
.++++ ..++|+|++|||+||+++++++++..| .+|+++++++|+. ++.+.++++|+.+|+ +|+++++.+.+.
T Consensus 16 ~i~~~----~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~-~~~~~a~~~a~~lgi-~~~~i~i~~~~~- 88 (257)
T 2e18_A 16 FIREK----GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFEN-KDVEDAKLVAEKLGI-GYKVINIKPIVD- 88 (257)
T ss_dssp HHHHH----CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCS-THHHHHHHHHHHHTC-EEEECCCHHHHH-
T ss_pred HHHHh----CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCc-hHHHHHHHHHHHhCC-CEEEEEChHHHH-
Confidence 45554 347899999999999999999988755 8999999999987 889999999999999 899999975432
Q ss_pred hhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHh-cCCCCeEEeccccCC
Q 011097 164 DYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFA-LNPELNVVAPWREWD 242 (493)
Q Consensus 164 ~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~-l~p~i~ii~PLr~~~ 242 (493)
.+. ..+... .++ . .-|..++.+++..+.++|++.|+.+|+|||+.. |. ..+.. ......+++||.++
T Consensus 89 ~~~-~~l~~~--~~~-~-~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e--~~----~Gy~t~~g~~~~~i~Pl~~l- 156 (257)
T 2e18_A 89 SFV-ENLELN--LDR-K-GLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSE--FL----TGYFTKWGDGASDYAPIINL- 156 (257)
T ss_dssp HHH-HHHCSC--CCH-H-HHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHH--HH----HTCSCTTSTTCSSBCTTTTS-
T ss_pred HHH-HHhccc--ccc-c-hhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhH--Hh----cCCeeccCCCccCEeecCCC-
Confidence 111 111110 000 0 011222347889999999999999999998421 11 11111 12346789999986
Q ss_pred CCCHHHHHHHHHHCCCCC
Q 011097 243 IQGREDAIEYAKKHNVPV 260 (493)
Q Consensus 243 l~sKeEi~~yA~~~GIp~ 260 (493)
+|+|+++||+.+|+|.
T Consensus 157 --~K~ev~~la~~~gip~ 172 (257)
T 2e18_A 157 --YKTEVWEIAKRIGVPE 172 (257)
T ss_dssp --CHHHHHHHHHHHTCCH
T ss_pred --cHHHHHHHHHHcCCCH
Confidence 7999999999999994
No 21
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.71 E-value=2.3e-17 Score=178.42 Aligned_cols=159 Identities=18% Similarity=0.271 Sum_probs=114.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHH-HHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEE-KAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~-~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++|+||+|||+||+++++++++.+|.+|+|+|+|.|.. ..+.+.+++ +|+.+|+ +++++|+++.|.+.. ..-
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~G~~v~av~v~~g~~~~~e~~~~~~~la~~lgi-~~~~v~~~~~f~~~l-----~~~ 301 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGL-NIVHVPAEDRFLSAL-----AGE 301 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCC-CEEEEECHHHHHHHH-----TTC
T ss_pred cceEEEecCCCCHHHHHHHHHHHhCCCEEEEEEeCCCCCchHHHHHHHHHHHHhCC-cEEEEeccHHHHHhh-----cCC
Confidence 69999999999999999999886689999999999974 356778866 8999999 899999988775432 110
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHc-CCcEeeeCCCCCCCChH-------------HHHHHHHhcCC--CCeEEec
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREV-GADAVAHGCTGKGNDQV-------------RFELTFFALNP--ELNVVAP 237 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~-Gad~IAtGhn~~gnD~~-------------r~~~~~~~l~p--~i~ii~P 237 (493)
...+ ..|..+++.+++.+.++|+++ |+++|++||+.. |+. +.+..+..+.. ..++++|
T Consensus 302 ~~pe----~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~--D~~E~~~~~~~~s~~iks~~~l~gl~~~~~~~~i~P 375 (525)
T 1gpm_A 302 NDPE----AKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP--DVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEP 375 (525)
T ss_dssp CCHH----HHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH--HHHHTTC----------------------CCEEECT
T ss_pred CChH----HhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc--chhhhcCccccccccccccccccccccccCCcEEeh
Confidence 0000 011124566778899999999 999999999753 322 11111112211 3689999
Q ss_pred cccCCCCCHHHHHHHHHHCCCCCCCCCCCCCc
Q 011097 238 WREWDIQGREDAIEYAKKHNVPVPVTKKSIYS 269 (493)
Q Consensus 238 Lr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS 269 (493)
|+++ +|+|++++|+++|+|......||++
T Consensus 376 L~~l---~K~EVr~la~~lglp~~i~~~~P~~ 404 (525)
T 1gpm_A 376 LKEL---FKDEVRKIGLELGLPYDMLYRHPFP 404 (525)
T ss_dssp TTTC---CHHHHHHHHHHTTCCHHHHTSCCCC
T ss_pred hhcC---CHHHHHHHHHHcCCCHHhcccCCCC
Confidence 9986 6999999999999995433467765
No 22
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.71 E-value=2.4e-17 Score=162.35 Aligned_cols=145 Identities=10% Similarity=0.108 Sum_probs=110.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++|+|++|||+||+++++++++.+|.+|++++++.|+. .++.+.++++|+.+|+ +|+++|+.+.+. .+ .+...
T Consensus 27 ~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~~~~~~~~~~a~~~a~~lgi-~~~~v~i~~~~~-~~----~~~~~ 100 (249)
T 3p52_A 27 QGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALRLCADLNL-EYKIIEIQSILD-AF----IKQSE 100 (249)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCSSCHHHHHHHHHHHHHTC-EEEECCCHHHHH-HH----HTTCS
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHHHHhCC-CEEEEECcHHHH-HH----HHhcc
Confidence 68999999999999999999886699999999999873 5788999999999999 899999975432 21 11100
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHh--c-CCCCeEEeccccCCCCCHHHHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFA--L-NPELNVVAPWREWDIQGREDAIE 251 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~--l-~p~i~ii~PLr~~~l~sKeEi~~ 251 (493)
..++ ...|.+|+.+|+..+..+|++.|+.+|+|||. |+. ++.. . ......++||.++ +|.|+++
T Consensus 101 ~~~~--~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~----se~----~~g~~t~~gd~~~~i~PL~~l---~K~eV~~ 167 (249)
T 3p52_A 101 NTTL--VSLGNFAARIRMSLLYDYSALKNSLVIGTSNK----SEL----LLGYGTIYGDLACAFNPIGSL---YKSEIYA 167 (249)
T ss_dssp CCCH--HHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH----HHH----HHTCSCTTTTTCCSEETTTTS---CHHHHHH
T ss_pred ccCC--ccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCH----HHH----HccchhhhccccCccccccCC---cHHHHHH
Confidence 0000 01234567899999999999999999999873 222 2111 1 2235689999975 7999999
Q ss_pred HHHHCCCC
Q 011097 252 YAKKHNVP 259 (493)
Q Consensus 252 yA~~~GIp 259 (493)
+|+..|+|
T Consensus 168 la~~~gip 175 (249)
T 3p52_A 168 LAKYLNLH 175 (249)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCc
Confidence 99999999
No 23
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.69 E-value=2.2e-17 Score=163.79 Aligned_cols=148 Identities=13% Similarity=0.116 Sum_probs=109.0
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
.++|+|++|||+||+++++++++..+.+|++++++.|+. .++.+.++++|+.+|+ +++++|+++.+. .+.. .+..
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~~~e~~~a~~~a~~lgi-~~~~i~i~~~~~-~~~~-~~~~- 100 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSI-PYTEYSIAPYDA-IFSS-HFKD- 100 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTC-CEEECCCHHHHH-HHHH-HCTT-
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCC-CEEEEeChHHHH-HHHH-Hhhh-
Confidence 368999999999999999999886348999999999863 4789999999999999 899999975432 1111 1100
Q ss_pred ccccCcccc-cccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC-CCCeEEeccccCCCCCHHHHHH
Q 011097 174 AIYERKYLL-GTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN-PELNVVAPWREWDIQGREDAIE 251 (493)
Q Consensus 174 a~y~g~y~~-~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~-p~i~ii~PLr~~~l~sKeEi~~ 251 (493)
..++ -|..++.+++..+.++|++.|+.+|+||+. |+. + ..+.... ....+++||.++ +|.|+++
T Consensus 101 -----~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~----~E~-~-~Gy~t~~gd~~~~i~PL~~l---~K~ev~~ 166 (268)
T 1xng_A 101 -----ASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK----SER-M-LGYGTLFGDLACAINPIGEL---FKTEVYE 166 (268)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH----HHH-H-HTCSCTTTTTCCSEETTTTS---CHHHHHH
T ss_pred -----cCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcH----HHH-h-cCcccccCCCCeeEEecCCC---CHHHHHH
Confidence 0011 122346788899999999999999999962 222 1 1111111 135799999986 7999999
Q ss_pred HHHHCCCCC
Q 011097 252 YAKKHNVPV 260 (493)
Q Consensus 252 yA~~~GIp~ 260 (493)
||+.+|+|.
T Consensus 167 la~~~gip~ 175 (268)
T 1xng_A 167 LARRLNIPK 175 (268)
T ss_dssp HHHHTTCCH
T ss_pred HHHHcCCcH
Confidence 999999993
No 24
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=177.76 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=120.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHH-h
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLR-A 172 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~-~ 172 (493)
++|+||+|||+||+|++++|++.+| ++|+|+++|+|+. ..+.+.+++.|+++|+ +++++|+++.|.......... .
T Consensus 241 ~~vvv~lSGGvDSsVla~Ll~~alG~~~V~aV~vd~g~~~~~e~e~a~~~a~~lGI-~~~vvdi~~~f~~~~~~l~~~~~ 319 (697)
T 2vxo_A 241 SKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGI-QVKVINAAHSFYNGTTTLPISDE 319 (697)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCCSSTTHHHHHHHHHTTC-CEEEEECHHHHHTCCCBCC----
T ss_pred cceEEEccCchHHHHHHHHHHHhcCCceEEEEEeccccCCcchHHHHHHHHHHhCC-cEEEecchHHHHhhhhhhccccc
Confidence 7999999999999999999998778 9999999999984 4678999999999999 899999988776421110000 0
Q ss_pred Cccc-cCccccccc-C----cHHH----HHHHHHHHHHHcCCc----EeeeCCCCCCCChHH-HHHH-------------
Q 011097 173 GAIY-ERKYLLGTS-M----ARPV----IAKAMVDVAREVGAD----AVAHGCTGKGNDQVR-FELT------------- 224 (493)
Q Consensus 173 ~a~y-~g~y~~~~~-~----~R~l----~~~~l~~~A~e~Gad----~IAtGhn~~gnD~~r-~~~~------------- 224 (493)
+..| .++.+..|. + .|.+ +.+.+.++|++.|++ +|||||+.. |+.. +...
T Consensus 320 ~~~Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~~~~--D~iEs~~~~l~~g~~~iks~~n 397 (697)
T 2vxo_A 320 DRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRP--DLIESASLVASGKAELIKTHHN 397 (697)
T ss_dssp ------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSC--CSBCCHHHHHHSCCCGGGSCCS
T ss_pred ccchhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEeccCh--hhhhhhhhhhhcCccccccccc
Confidence 0011 111112221 1 3544 344556778999998 999999764 4421 1100
Q ss_pred ---H-HhcCCCCeEEeccccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccccc
Q 011097 225 ---F-FALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHL 277 (493)
Q Consensus 225 ---~-~~l~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~g~ 277 (493)
+ ..+.....+++||+++ +|+|+++||+.+|+|......||+. +.|||.+
T Consensus 398 v~g~~~~~~~~~~~i~PL~~L---~K~EVr~la~~lGlP~~i~~r~Ps~-gpgL~~r 450 (697)
T 2vxo_A 398 DTELIRKLREEGKVIEPLKDF---HKDEVRILGRELGLPEELVSRHPFP-GPGLAIR 450 (697)
T ss_dssp SCHHHHHHHHTTCEECGGGGS---CHHHHHHHHHHTTCCHHHHTCCCCC-TTGGGGG
T ss_pred cchhhHHhccCCEEEEecccC---CHHHHHHHHHHcCCCcceeeCCCCC-CCccccC
Confidence 0 0111125799999986 6999999999999998544456554 5688754
No 25
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.65 E-value=3.9e-16 Score=153.54 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=110.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a 174 (493)
++|+||+|||+||+|++++|.+. +.+|.++++|.|.. .++.+.++++|+++|+ ++++++....+.+ +.. ..+.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~-~~~v~vv~idtg~~~~et~~~~~~~~~~~gi-~~~v~~~~~~~~~-~~~---~~g~ 119 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQI-RPDIPVILTDTGYLFPETYRFIDELTDKLKL-NLKVYRATESAAW-QEA---RYGK 119 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHH-STTCEEEECCCSCBCHHHHHHHHHHHHHTTC-EEEECCCSSCHHH-HHH---HTCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCHHHHHHHHHHHHHhCC-ceEEEcCCCCHHH-HHH---HcCC
Confidence 68999999999999999999986 78999999999984 4678999999999999 8999876532211 110 0111
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH-HHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHH
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV-RFELTFFALNPELNVVAPWREWDIQGREDAIEYA 253 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~-r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA 253 (493)
.+.......+.||...+...|.+++++.|+++++||++.. |.. |.........+...++.||.+| +++||.+|+
T Consensus 120 ~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~d--ds~~R~~l~~~~~~~~~~~i~PL~~w---t~~dV~~y~ 194 (252)
T 2o8v_A 120 LWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRRE--QSGSRANLPVLAIQRGVFKVLPIIDW---DNRTIYQYL 194 (252)
T ss_dssp GGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCST--TTTCCTTSCSEEESSSSEEECGGGSC---CHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccc--cccccccCceeecCCCeEEEechhhC---CHHHHHHHH
Confidence 1111000112356666777888999999999999999764 321 1110000012246789999998 799999999
Q ss_pred HHCCCCCC
Q 011097 254 KKHNVPVP 261 (493)
Q Consensus 254 ~~~GIp~~ 261 (493)
+++|||+.
T Consensus 195 ~~~~lp~~ 202 (252)
T 2o8v_A 195 QKHGLKYH 202 (252)
T ss_dssp HHTTCCCC
T ss_pred HHcCCCCC
Confidence 99999985
No 26
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.61 E-value=1.8e-15 Score=153.32 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=96.0
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHc-------CCceEEEEc-CcHHHHHhh
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKAS-------GACQLVVKD-LKEEFVKDY 165 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~L-------GI~~~~VvD-l~eef~~~~ 165 (493)
.++|++|++|| +||+|++++|+++ |++|+++|+++|+ ++.+.++++|+.| |+ +++++| +++.+
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll~~~-G~~v~~v~~~~~~--~~~~~a~~~a~~l~~~~~~~~i-~~~vv~~~~~~~---- 248 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLMMKR-GVEVIPVYIGKDD--KNLEKVRSLWNLLKRYSYGSKG-FLVVAESFDRVL---- 248 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHHHHB-TCEEEEEEESCSS--HHHHHHHHHHHHHHTTCTTSCC-CCEEESSHHHHH----
T ss_pred CCCcEEEEEeC-CcHHHHHHHHHhC-CCeEEEEEEEECH--HHHHHHHHHHHHHhhhccCCCC-cEEEeCCCHHHH----
Confidence 34799999999 9999999999998 9999999999665 5678899999999 88 788888 64322
Q ss_pred hhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC-CCChHHHHHHHHhcCCCCeEEeccccCCCC
Q 011097 166 IFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK-GNDQVRFELTFFALNPELNVVAPWREWDIQ 244 (493)
Q Consensus 166 i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~-gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~ 244 (493)
++|+++||++|+|||+.. -.||..+ +....-....++++||..+
T Consensus 249 -------------------------------~~A~~~ga~~I~tG~~~~~~~~qt~~-l~~~~~~~~~~vl~PL~~~--- 293 (307)
T 1vbk_A 249 -------------------------------KLIRDFGVKGVIKGLRPNDLNSEVSE-ITEDFKMFPVPVYYPLIAL--- 293 (307)
T ss_dssp -------------------------------HHHHHHTCCEEECCCCGGGCCTTCHH-HHHHHHHCSSCEECHHHHS---
T ss_pred -------------------------------HHHHHcCCCEEEECcccchhccccHH-HhhhccCcCCeEEEccCCC---
Confidence 688999999999999863 2344433 2111111247899999986
Q ss_pred CHHHHHHHHHHCCC
Q 011097 245 GREDAIEYAKKHNV 258 (493)
Q Consensus 245 sKeEi~~yA~~~GI 258 (493)
+|+|++++|++.|+
T Consensus 294 ~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 294 PEEYIKSVKERLGL 307 (307)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 79999999999885
No 27
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.56 E-value=1.1e-14 Score=145.38 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=108.2
Q ss_pred CEEEEEEcCChHHHHHHHHHHHcc----------CCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENY----------GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDY 165 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~----------G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~ 165 (493)
++|+|++|||+||++++.++++.. ||+|+|+++++|+. .+++.|+++|+.+|+.+|+++|+.+.|. .+
T Consensus 41 ~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~-~~~~dA~~va~~lgi~~~~~i~i~~~~~-~~ 118 (275)
T 1wxi_A 41 KSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQ-ADEQDCQDAIAFIQPDRVLTVNIKGAVL-AS 118 (275)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSC-TTHHHHHHHHHHHCCSEEEECCCHHHHH-HH
T ss_pred CCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCc-cCHHHHHHHHHHcCCCeEEEEecHHHHH-HH
Confidence 589999999999999998887753 47999999998865 5799999999999985699999975443 22
Q ss_pred hhhHHHhCccccCccccccc-CcH--HHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc-CCCCeEEeccccC
Q 011097 166 IFPCLRAGAIYERKYLLGTS-MAR--PVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL-NPELNVVAPWREW 241 (493)
Q Consensus 166 i~~~i~~~a~y~g~y~~~~~-~~R--~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l-~p~i~ii~PLr~~ 241 (493)
+ ..+.. .|..+..+. +|. .+++..+..+|.+.|+.+|+|||.. +. ...+... ......++||.++
T Consensus 119 ~-~~l~~----~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTgn~~----E~--~~Gy~t~~gd~~~~~~PL~~l 187 (275)
T 1wxi_A 119 E-QALRE----AGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAA----EA--ITGFFTKYGDGGTDINPLYRL 187 (275)
T ss_dssp H-HHHHH----HTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHH----HH--TTTCSCTTTTTCCSBCTTTTC
T ss_pred H-HHHHh----cCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECccHH----HH--ccCcccccCCCccceeeccCC
Confidence 2 12221 111122221 222 3567788899999999999998632 11 0111111 1124679999985
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 242 DIQGREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 242 ~l~sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
+|.|++++|+.+|+|... ..+|-|.
T Consensus 188 ---~K~eVr~la~~lglp~~i-~~k~psa 212 (275)
T 1wxi_A 188 ---NKRQGKQLLAALACPEHL-YKKAPTA 212 (275)
T ss_dssp ---CHHHHHHHHHHTTCCGGG-TSCC---
T ss_pred ---CHHHHHHHHHHhCCcHhh-ccCCCCC
Confidence 799999999999998421 3455555
No 28
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.53 E-value=7.4e-15 Score=149.84 Aligned_cols=149 Identities=16% Similarity=0.218 Sum_probs=105.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHcc---CCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHH
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENY---GCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLR 171 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~---G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~ 171 (493)
++|+||+|||+||+|++++|.+.+ +.++.++|+|.|.. .+.++.++++|+++|+ +++++...+.+... . +...
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi-~l~v~~~~~~~~~G-~-~~~~ 123 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGL-DLITHINPDGVAQG-I-NPFT 123 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHHHHHHTTTC-CEEEECC--------------
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHHHHHHHHHHHHcCC-CEEEEeCchHHhcC-C-Cccc
Confidence 479999999999999999998752 56889999999985 4678999999999999 89998875432110 0 0000
Q ss_pred hCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH-HHHH-HHH------hcC-----C--------
Q 011097 172 AGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV-RFEL-TFF------ALN-----P-------- 230 (493)
Q Consensus 172 ~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~-r~~~-~~~------~l~-----p-------- 230 (493)
...+.||+.++...|.+++++.|++++++||+.+ |.. |... .+. ... |
T Consensus 124 ---------~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D--es~~Ra~~~~~~~r~~~~~~d~~~~rp~l~~~~n~ 192 (325)
T 1zun_A 124 ---------HGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD--EEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNG 192 (325)
T ss_dssp -----------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT--SSGGGGGCCSEEEECTTCCBCGGGCCCCCSSCCCC
T ss_pred ---------cChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc--hhhhhhcccceeccccccccCccccCcchhhhccc
Confidence 0112356666677888899999999999999764 322 2110 010 001 1
Q ss_pred -----CCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 231 -----ELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 231 -----~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
...+++||.+| +++||.+|++.+|||+.
T Consensus 193 ~~~~g~~~~i~PLl~w---t~~dIw~Yi~~~~lp~~ 225 (325)
T 1zun_A 193 NVNKGESIRVFPLSNW---TELDIWQYIYLEGIPIV 225 (325)
T ss_dssp CCCTTCEEEECTTTTC---CHHHHHHHHHHHTCCCC
T ss_pred cccCCCeEEEEchhhC---CHHHHHHHHHHhCCCcc
Confidence 13468999998 79999999999999985
No 29
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.51 E-value=6e-14 Score=139.56 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=108.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC--------CeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG--------CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIF 167 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G--------~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~ 167 (493)
++|+|++|||+||++++.++++..+ ++|+|+++++|.. .+++.|+++|+.+|+.+|+++|+.+.|. .+.
T Consensus 39 ~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~~-~d~~~A~~va~~lgi~~~~~i~i~~~~~-~~~- 115 (271)
T 1kqp_A 39 KGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQ-QDEDDAQLALKFIKPDKSWKFDIKSTVS-AFS- 115 (271)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSC-TTHHHHHHHHHHHCCSEEEECCCHHHHH-HHH-
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCCC-CCHHHHHHHHHhcCCCeEEEeccHHHHH-HHH-
Confidence 5899999999999999998887522 7999999998864 5799999999999985699999976543 222
Q ss_pred hHHHhCccccCccccccc-CcH--HHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCC
Q 011097 168 PCLRAGAIYERKYLLGTS-MAR--PVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQ 244 (493)
Q Consensus 168 ~~i~~~a~y~g~y~~~~~-~~R--~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~ 244 (493)
..+... + +..+..+. +|. .+++..+..+|.+.|+.+++|||. |+. +..|+.........++||.++
T Consensus 116 ~~l~~~--~-~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl~tgn~----~E~-~~Gy~t~~gd~~~~~~Pl~~l--- 184 (271)
T 1kqp_A 116 DQYQQE--T-GDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA----AEA-VTGFFTKYGDGGADLLPLTGL--- 184 (271)
T ss_dssp HHHHHH--H-SCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH----HHH-TTTCSCTTTTTCCSBCTTTTC---
T ss_pred HHHhhh--c-CCCCcchhhhhHHHHHHHHHHHHHHHHCCCEEEECccH----HHh-ccCCccccccccccccccccC---
Confidence 122210 0 11112221 121 256678889999999999999863 221 000100011124679999985
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCcc
Q 011097 245 GREDAIEYAKKHNVPVPVTKKSIYSR 270 (493)
Q Consensus 245 sKeEi~~yA~~~GIp~~~t~~cpyS~ 270 (493)
+|.|++++|+.+|+|... ..+|-|.
T Consensus 185 ~K~eVr~la~~lglp~~i-~~k~psa 209 (271)
T 1kqp_A 185 TKRQGRTLLKELGAPERL-YLKEPTA 209 (271)
T ss_dssp CHHHHHHHHHHTTCCTHH-HHSCCBC
T ss_pred CHHHHHHHHHHcCCCHhh-ccCCCCc
Confidence 799999999999998321 2345554
No 30
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.6e-14 Score=140.31 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=106.0
Q ss_pred EEEEEEcCChHHHHHHHHHHHccCC---eEEEEEEecCCC-cccHHHHHHHHHHcCCc---eEEEEcCc-----HHHHHh
Q 011097 97 KVVLAYSGGLDTSVIVPWLRENYGC---EVVCFTADVGQG-IKELDGLEEKAKASGAC---QLVVKDLK-----EEFVKD 164 (493)
Q Consensus 97 KVvVA~SGG~DSsvll~~L~e~~G~---eViavtid~Gq~-~ed~e~a~~~A~~LGI~---~~~VvDl~-----eef~~~ 164 (493)
+|+|++|||+||+|+++++.+. .. ++.++|+|.|.. .++.+.++++|+++|+. +++++... +++...
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~-~~~~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~~~~~~~~ 121 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKL-SEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASK 121 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHH-TTTSCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSSHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHh-CccCCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccCHHHHHHH
Confidence 7999999999999999999886 44 899999999985 47789999999999982 47777653 233221
Q ss_pred hhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChH-HHHHHHHhcC--CCCeEEeccccC
Q 011097 165 YIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQV-RFELTFFALN--PELNVVAPWREW 241 (493)
Q Consensus 165 ~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~-r~~~~~~~l~--p~i~ii~PLr~~ 241 (493)
.-.+.... ....||...+..-|.+++++.|++++++||+.+ |.. |-..-+.... +.+..+.||.+|
T Consensus 122 ~G~~~~~~---------~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~d--ds~~R~~~~~~~~~~~~~~~ki~PL~~w 190 (261)
T 2oq2_A 122 YGDFLWEK---------DDDKYDYLAKVEPAHRAYKELHISAVFTGRRKS--QGSARSQLSIIEIDELNGILKINPLINW 190 (261)
T ss_dssp HCTTHHHH---------CHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGG--GCGGGGGCCSEEEETTTTEEEECTTTTC
T ss_pred hCCCcccc---------ChHHHHHHHhHHHHHHHHHHcCCCEEEEecccc--chHHHccCCceeecCCCCeEEEechHhC
Confidence 10011111 112345555667788899999999999999754 221 1110000011 345679999998
Q ss_pred CCCCHHHHHHHHHHCCCCCC
Q 011097 242 DIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 242 ~l~sKeEi~~yA~~~GIp~~ 261 (493)
+++||.+|++.+|||+.
T Consensus 191 ---t~~dV~~Yi~~~~lp~~ 207 (261)
T 2oq2_A 191 ---TFEQVKQYIDANNVPYN 207 (261)
T ss_dssp ---CHHHHHHHHHHHTCCCC
T ss_pred ---CHHHHHHHHHHcCCCCC
Confidence 79999999999999984
No 31
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.46 E-value=5.7e-13 Score=133.44 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=108.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHc---c---CC--eEEEEEEecCCCcccHHHHHHHHHHcC-CceEEEEcCcHHHHHhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLREN---Y---GC--EVVCFTADVGQGIKELDGLEEKAKASG-ACQLVVKDLKEEFVKDYI 166 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~---~---G~--eViavtid~Gq~~ed~e~a~~~A~~LG-I~~~~VvDl~eef~~~~i 166 (493)
++|+|++|||+||+++++++++. + |+ +|+++++.++.. .+.+.+++.|+.+| + +++++|+++.|.. +.
T Consensus 47 ~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~~~-~~~~dA~~~a~~lg~i-~~~~i~i~~~~~~-~~ 123 (285)
T 3dpi_A 47 RACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGAQ-HDEADARRALAFVRAD-ETLTVDVKPAADA-ML 123 (285)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC----CHHHHHHHHHHCCS-EEEECCCHHHHHH-HH
T ss_pred CcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCCCH-HHHHHHHHHHHHcCCC-cEEEEEChHHHHH-HH
Confidence 68999999999999998877652 1 55 899999998864 57789999999999 7 8999999866532 11
Q ss_pred hhHHHh-CccccCcccccc---cCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC-CCCeEEeccccC
Q 011097 167 FPCLRA-GAIYERKYLLGT---SMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN-PELNVVAPWREW 241 (493)
Q Consensus 167 ~~~i~~-~a~y~g~y~~~~---~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~-p~i~ii~PLr~~ 241 (493)
..+.. +....+..+..+ .+...+|...+..+|.+.|+-++.||+. ......+.... .....++|+.++
T Consensus 124 -~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~------sE~~~Gy~T~~GD~~~~~~Pl~~l 196 (285)
T 3dpi_A 124 -AALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHA------AESVMGFFTKFGDGGADVLPLAGL 196 (285)
T ss_dssp -HHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH------HHHHHHHHHCCCCCCCSBCTTTTC
T ss_pred -HHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccH------HhhhCCcccccCCCceeEeeecCC
Confidence 11221 100000000111 2335678899999999999988888862 22223333332 235689999986
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCccc
Q 011097 242 DIQGREDAIEYAKKHNVPVPVTKKSIYSRD 271 (493)
Q Consensus 242 ~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d 271 (493)
+|.|++++|+..|+|-.. ..+|-|.+
T Consensus 197 ---~K~eV~~la~~lg~p~~i-~~k~pSa~ 222 (285)
T 3dpi_A 197 ---TKRRVRALARMLGADEPL-VLKTPTAD 222 (285)
T ss_dssp ---CHHHHHHHHHHTTCCHHH-HTCCCHHH
T ss_pred ---cHHHHHHHHHHcCCCHHH-hcCCCCCC
Confidence 799999999999998321 24556653
No 32
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.46 E-value=5.2e-13 Score=133.42 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=110.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHc---c-------CCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLREN---Y-------GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDY 165 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~---~-------G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~ 165 (493)
++|+|++|||+||++++.++++. + +++|+|+++++|+. .+.+.|++.|+.+|+.+|+++|+++.|.. +
T Consensus 41 ~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~-~~~~~A~~~a~~lgi~~~~~i~i~~~~~~-~ 118 (279)
T 3q4g_A 41 KSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQ-KDEDEAQLALSFIRPTHSVSVNIKAGVDG-L 118 (279)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSC-SCHHHHHHHHHHHCCSEEEECCCHHHHHH-H
T ss_pred CCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCCh-HHHHHHHHHHHHhCCCeEEEEECHHHHHH-H
Confidence 68999999999999999987543 1 57999999999875 67899999999999856999999866642 1
Q ss_pred hh----hHHHhCccccCcccccc---cCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc-CCCCeEEec
Q 011097 166 IF----PCLRAGAIYERKYLLGT---SMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL-NPELNVVAP 237 (493)
Q Consensus 166 i~----~~i~~~a~y~g~y~~~~---~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l-~p~i~ii~P 237 (493)
.. .+........+..+..+ .+...+|...|..+|.+.|+-++.|||- ++ ....+... +-....++|
T Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn~----sE--~~~Gy~TkyGD~~~di~P 192 (279)
T 3q4g_A 119 HAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDHS----AE--NITGFYTKFGDGACDLAP 192 (279)
T ss_dssp HHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCH----HH--HHHTCSCTTTTTCCSBCT
T ss_pred HHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCccH----Hh--hhccchhhcCCcccceee
Confidence 21 11111000001111222 1224567889999999999988888862 11 11111111 112457899
Q ss_pred cccCCCCCHHHHHHHHHHCCCCCCCCCCCCCcccCccc
Q 011097 238 WREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLW 275 (493)
Q Consensus 238 Lr~~~l~sKeEi~~yA~~~GIp~~~t~~cpyS~d~nl~ 275 (493)
+.+. +|.|++++|+.+|+|-.. ..+|=|. +||
T Consensus 193 l~dl---~Kt~Vr~LA~~lgiP~~i-~~K~PSa--~L~ 224 (279)
T 3q4g_A 193 LFGL---NKRQVRLLAKTLGAPEQL-VYKTPTA--DLE 224 (279)
T ss_dssp TTTC---CHHHHHHHHHHTTCCHHH-HTCCCSC--CC-
T ss_pred cCCC---cHHHHHHHHHHhCCcHHH-hcCCCCC--CcC
Confidence 9975 799999999999998211 2345554 455
No 33
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.42 E-value=1.5e-13 Score=150.51 Aligned_cols=144 Identities=14% Similarity=0.239 Sum_probs=104.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
++|+|++|||+||++++.++++.+| .+|++++++.+.. .++++.|+++|+.||+ +|+++|+++.|.. ++ ..+...
T Consensus 327 ~~vvvglSGGvDSsv~a~la~~alG~~~v~~v~m~~~~~~~~~~~~A~~la~~lgi-~~~~i~i~~~~~~-~~-~~l~~~ 403 (590)
T 3n05_A 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGL-NFRTVSIEPMFDA-YM-ASLGLT 403 (590)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCSSCCHHHHHHHHHHHHHHTC-EEEECCSHHHHHH-HH-HHHCCC
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHhCcccEEEEEECCCCCCHHHHHHHHHHHHHcCC-cEEEEEChHHHHH-HH-HHhccc
Confidence 6899999999999999999988778 8999999998763 4789999999999999 8999999876542 11 111100
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhc-CCCCeEEeccccCCCCCHHHHHHH
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFAL-NPELNVVAPWREWDIQGREDAIEY 252 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l-~p~i~ii~PLr~~~l~sKeEi~~y 252 (493)
. +... .+...+++..+..+|.+.|+.+|+||+ . |+. ....... ......++|+.++ +|.|++++
T Consensus 404 ----~-~~~~-n~~ar~r~~~l~~~A~~~g~~vl~TGn-~---se~--~~Gy~t~~gd~~~~~~Pl~~l---~K~eVr~l 468 (590)
T 3n05_A 404 ----G-LAEE-NLQSRLRGTTLMAISNQEGHIVLAPGN-K---SEL--AVGYSTLYGDSVGAYGPIKDV---YKTSIFRL 468 (590)
T ss_dssp ----T-HHHH-HHHHHHHHHHHHHHHHHHTCEEBCCCC-H---HHH--HHTCCCSSCTTSCSBCTTTTS---CHHHHHHH
T ss_pred ----c-hhhh-HHHHHHHHHHHHHHHHhcCCEEEeCCC-H---HHH--hcCchhhcCCCccceeecCCC---cHHHHHHH
Confidence 0 0000 112345678889999999999999994 1 221 1101111 1135678999986 79999999
Q ss_pred HHHCC
Q 011097 253 AKKHN 257 (493)
Q Consensus 253 A~~~G 257 (493)
|+..|
T Consensus 469 a~~lg 473 (590)
T 3n05_A 469 AEWRN 473 (590)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99887
No 34
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=99.39 E-value=1.9e-12 Score=126.46 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=103.0
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-------cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-------IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-------~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
+||++++|||+||++++++|+++ |++|+|+++.+++. ..+++.++++|+.+|| |++++|++..-. +.+
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~-G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGI-pl~~v~~~g~~~-~e~-- 79 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN-RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGI-PLVKGFTQGEKE-KEV-- 79 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEEECC--------CCSSSHHHHHHHHHTC-CEEEEEC-------CH--
T ss_pred CEEEEEecCcHHHHHHHHHHHHc-CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCC-CEEEEECCCCch-HHH--
Confidence 69999999999999999999997 99999999888763 2457889999999999 899999964211 100
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCCh-HHHHHHHHhcCCCCeEEeccccCCCCCHH
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQ-VRFELTFFALNPELNVVAPWREWDIQGRE 247 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~-~r~~~~~~~l~p~i~ii~PLr~~~l~sKe 247 (493)
..|.+..++.|++.+++|.-.. .+| .|.+.....+ .++.++||=.. +.+
T Consensus 80 ------------------------e~l~~~l~~~~i~~vv~Gdi~s-~yqr~r~e~vc~~~--gl~~~~PLW~~---d~~ 129 (237)
T 3rjz_A 80 ------------------------EDLKRVLSGLKIQGIVAGALAS-KYQRKRIEKVAKEL--GLEVYTPAWGR---DAK 129 (237)
T ss_dssp ------------------------HHHHHHHTTSCCSEEECC---C-CSHHHHHHHHHHHT--TCEEECSSSSC---CHH
T ss_pred ------------------------HHHHHHHHhcCCcEEEECCcch-HHHHHHHHHHHHHc--CCEEEccccCC---CHH
Confidence 1223333445999999998654 344 3455544445 48999997443 588
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcccCcccccccc
Q 011097 248 DAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHE 280 (493)
Q Consensus 248 Ei~~yA~~~GIp~~~t~~cpyS~d~nl~g~s~e 280 (493)
++.+-....|+....++-..+--|..++|+.+.
T Consensus 130 ~Ll~e~i~~G~~aiiv~v~~~gL~~~~lG~~l~ 162 (237)
T 3rjz_A 130 EYMRELLNLGFKIMVVGVSAYGLDESWLGRILD 162 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEESTTCCGGGTTCBCC
T ss_pred HHHHHHHHCCCEEEEEEEecCCCChHHCCCccC
Confidence 888888889998654433334445556565553
No 35
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.6e-13 Score=134.87 Aligned_cols=169 Identities=13% Similarity=0.072 Sum_probs=111.4
Q ss_pred ceEEEecccccccChHHHHHHHHhhhhh----hccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHcc---------
Q 011097 53 RAVVSSTCNVIRACEPKAIQALLSSERE----VESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENY--------- 119 (493)
Q Consensus 53 ~av~~~~~~g~~lC~~~f~~~~~~~v~~----~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~--------- 119 (493)
.|++.+++++.+| ++.++++|.. +-+++++.++.+ +++|+|++|||+||+|+++++.+.+
T Consensus 14 ~~~~~~~~~~~~l-----~~~~~e~i~~~~~~il~~~~~~~~~~--~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~ 86 (306)
T 2wsi_A 14 TNSYLHIDQKSQI-----IASTQEAIRLTRKYLLSEIFVRWSPL--NGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQ 86 (306)
T ss_dssp HHHHHTCCCSCHH-----HHHHHHHHHHHHHHHHHTTTTTSCSS--SSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchHHH-----HHHHHHHHHHHHHHHHHHHHHHcccc--cCCEEEEecCCHHHHHHHHHHHHHHhhhcccccc
Confidence 3556666777666 4555555532 122244554332 3689999999999999999987631
Q ss_pred ------------CCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccC
Q 011097 120 ------------GCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSM 186 (493)
Q Consensus 120 ------------G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~ 186 (493)
+.++.++++|.|.. .+..+.++++++++|+ +++++.....+...
T Consensus 87 ~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl-~l~v~~~~~~~~~~---------------------- 143 (306)
T 2wsi_A 87 NSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCL-SLYESQRQSGASVN---------------------- 143 (306)
T ss_dssp HC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTE-EEEECCC-----CC----------------------
T ss_pred cccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEeCCcccccc----------------------
Confidence 46799999999985 4678999999999999 89888764221100
Q ss_pred cHHHHHHHHHHHHHH-cCCcEeeeCCCCCCCChHH-HHHHHHhc---CCCCeEEeccccCCCCCHHHHHHHHHHCCCCC
Q 011097 187 ARPVIAKAMVDVARE-VGADAVAHGCTGKGNDQVR-FELTFFAL---NPELNVVAPWREWDIQGREDAIEYAKKHNVPV 260 (493)
Q Consensus 187 ~R~l~~~~l~~~A~e-~Gad~IAtGhn~~gnD~~r-~~~~~~~l---~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~ 260 (493)
+...+.++++. -+.++|++|++.. |... ....+... .|....+.||.+| +++||..|++.+|||+
T Consensus 144 ----l~~~~~~~~k~~p~~~aii~G~Rrd--ds~~r~l~~~~~~d~~~p~~~ri~PL~dW---t~~DVw~Yi~~~~lpy 213 (306)
T 2wsi_A 144 ----MADAFRDFIKIYPETEAIVIGIRHT--DPFGEALKPIQRTDSNWPDFMRLQPLLHW---DLTNIWSFLLYSNEPI 213 (306)
T ss_dssp ----HHHHHHHHHHHCTTCCEEECCCCCC--SSSCCCCCSEEECCTTSCSCEEECTTTTC---CHHHHHHHHHHHCCCB
T ss_pred ----HHHHHHHHHhhCCCCcEEEEEEecc--cccccccCceeccCCCCCCcEEEeChHHC---CHHHHHHHHHHcCCCC
Confidence 01122344454 3788999998653 3221 00000000 1346779999998 7999999999999998
No 36
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.33 E-value=1.7e-12 Score=129.28 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=102.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC-
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG- 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~- 173 (493)
++|+|++| |+||+|+++++.+. +.+|.++++|.|.. .++.+.++++|+++|+ +++++.....-..+... ..+
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~-~~~i~vv~iDtg~~~~et~~~v~~~~~~~gi-~l~v~~~~~~~~~~~~~---~~g~ 128 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL-NRNVKVFSLDTGRLHPETYRFIDQVREHYGI-AIDVLSPDPRLLEPLVK---EKGL 128 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH-CTTCCEEEECCSCCCHHHHHHHHHHHHHHTC-CCEEECCCHHHHHHHHH---HHCS
T ss_pred CCEEEEee-cHHHHHHHHHHHHh-CCCceEEEEeCCCCCHHHHHHHHHHHHHHCC-eEEEEeCCccCHHHHHH---HhCC
Confidence 68999999 99999999999986 88999999999985 4678999999999999 78888765311111110 000
Q ss_pred -ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCCh--HHHHHHHHhc-------CCCCeEEeccccCCC
Q 011097 174 -AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQ--VRFELTFFAL-------NPELNVVAPWREWDI 243 (493)
Q Consensus 174 -a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~--~r~~~~~~~l-------~p~i~ii~PLr~~~l 243 (493)
..+.. ....||+..+..-+.++.+ +.+++++|++.. |. .|-..-+... .+.+.++.||.+|
T Consensus 129 ~~~~~~---~~~~cc~~~K~~pl~r~l~--~~~~~itG~r~d--ds~~~R~~~~~~~~d~~~~~~~~g~~~i~PL~~w-- 199 (275)
T 2goy_A 129 FSFYRD---GHGECCGIRKIEPLKRKLA--GVRAWATGQRRD--QSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSM-- 199 (275)
T ss_dssp CHHHHH---CTHHHHHHHTHHHHHHHHH--TCSEEECCCCGG--GTTSCSCCCCSEEECTTTCCSSSCCEEECTTTTC--
T ss_pred CCcccc---CHHHHHHHHHHHHHHHHHH--hcCchhcCchhh--hhhhhhhhCcccccccccccCCCCeEEEechHhC--
Confidence 00000 1123566555666666655 567999998753 22 1110000001 2346789999998
Q ss_pred CCHHHHHHHHHHCCCCCC
Q 011097 244 QGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 244 ~sKeEi~~yA~~~GIp~~ 261 (493)
+++||..|++++|||+.
T Consensus 200 -t~~dV~~Yi~~~~lp~~ 216 (275)
T 2goy_A 200 -TSEEVWGYIRMLELPYN 216 (275)
T ss_dssp -CHHHHHHHHHHTTCCCC
T ss_pred -CHHHHHHHHHHhCCCCC
Confidence 79999999999999984
No 37
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.12 E-value=2.6e-10 Score=125.87 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=101.3
Q ss_pred CCEEEEEEcCChHHHHHHHHH-------HHccCCe---------------------------------EEEEEEecCC-C
Q 011097 95 LNKVVLAYSGGLDTSVIVPWL-------RENYGCE---------------------------------VVCFTADVGQ-G 133 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L-------~e~~G~e---------------------------------Viavtid~Gq-~ 133 (493)
.++|+|++|||+||++++.++ .+.+|.+ |+++++..-. .
T Consensus 303 ~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~m~~~~ss 382 (634)
T 3ilv_A 303 SKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSG 382 (634)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHEEEEEEECTTCC
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhhhheeeeeecCCCCCC
Confidence 368999999999999888773 2334877 8899987422 3
Q ss_pred cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccc-------cCcHHHHHHHHHHHHHHcCCcE
Q 011097 134 IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGT-------SMARPVIAKAMVDVAREVGADA 206 (493)
Q Consensus 134 ~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~-------~~~R~l~~~~l~~~A~e~Gad~ 206 (493)
..+.+.|+++|+.||+ +++++|+.+.|.. ++..+-.. .|+.+.+. .+...++...+..+|.+.|+.+
T Consensus 383 ~~~~~dA~~la~~LGi-~~~~IdI~~~~~~-~~~~~~~~----~g~~p~~~~~~~~~~N~qaR~R~~~l~~~A~~~g~lv 456 (634)
T 3ilv_A 383 DETYTSAKTLAESIGA-TFYNWSVDEEIEQ-YKATIENV----IERPLTWEKDDITLQNIQARGRAPIIWMLTNVKQALL 456 (634)
T ss_dssp SHHHHHHHHHHHHHTC-EEEEEECHHHHHH-HHHHHHHH----TTSCCCTTTCHHHHHHHHHHTTHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHhCC-cEEEEccHHHHHH-HHHHHHHh----hCCCcccccCcchhhhhhHHHHHHHHHHHHHhcCCEE
Confidence 4789999999999999 8999999876643 22222111 12222211 1122345577889999999999
Q ss_pred eeeCCCCCCCChHHHHHHHH--hcCCC-CeEEeccccCCCCCHHHHHHHHHHC----CCC
Q 011097 207 VAHGCTGKGNDQVRFELTFF--ALNPE-LNVVAPWREWDIQGREDAIEYAKKH----NVP 259 (493)
Q Consensus 207 IAtGhn~~gnD~~r~~~~~~--~l~p~-i~ii~PLr~~~l~sKeEi~~yA~~~----GIp 259 (493)
++||+- | +.+.- ....+ ...+.|++++ +|.|++++|+.. |+|
T Consensus 457 lgTgnk----s----E~~~Gy~T~ygD~~~~~~Pl~~l---~KteVr~la~~l~~~~glp 505 (634)
T 3ilv_A 457 ITTSNR----S----EGDVGYATMDGDTAGGIAPIAGV---DKDFIRSWLRWAEKNRNQH 505 (634)
T ss_dssp BCCCCH----H----HHHTTCSCTTTTTCSSBBTTTTS---CHHHHHHHHHHHHHHSCCG
T ss_pred eccCch----h----hHhhCCccccCCcccCCcccCCC---cHHHHHHHHHHHHHcCCCc
Confidence 999851 1 22211 11222 4568999986 799999999988 888
No 38
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.03 E-value=5.3e-10 Score=124.31 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=93.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHc---cC---CeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLREN---YG---CEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~---~G---~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
++|+|++|||+||++++.++++. +| .+|+|++++... ..++++.|+++|+.+|+ +|+++|+++.|.. ++..
T Consensus 362 ~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~~~~~~~~~A~~la~~lgi-~~~~i~i~~~~~~-~~~~ 439 (680)
T 3sdb_A 362 PKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIKLARALGV-TFSEIDIGDTARL-MLHT 439 (680)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC--------CHHHHHHHHHTC-EEEECCCHHHHHH-HHHH
T ss_pred CcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCCCCHHHHHHHHHHHHHcCC-CEEEEECHHHHHH-HHHH
Confidence 68999999999999988777654 35 789999999654 34678999999999999 8999999876642 2211
Q ss_pred HHHhCcccc-Ccccccc---cCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcC-C-CCeEEeccccCC
Q 011097 169 CLRAGAIYE-RKYLLGT---SMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALN-P-ELNVVAPWREWD 242 (493)
Q Consensus 169 ~i~~~a~y~-g~y~~~~---~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~-p-~i~ii~PLr~~~ 242 (493)
+.. .+. +.....+ .+...++...+..+|.+.|+.++.||+- ++. ...+.... . ....+.|++++
T Consensus 440 -l~~--~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn~----sE~--~~Gy~T~~~gD~~~~~~Pl~~l- 509 (680)
T 3sdb_A 440 -IGH--PYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGDL----SEL--ALGWSTYGVGDQMSHYNVNAGV- 509 (680)
T ss_dssp -C--------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCCH----HHH--HHTCSCCSSSTTCCSEETTTTS-
T ss_pred -hch--hhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCcH----HhH--hcCeeeccCCCccccccccCCC-
Confidence 111 011 1100111 1223456678889999999988888741 111 11111122 2 24458999986
Q ss_pred CCCHHHHHHHHHHCC
Q 011097 243 IQGREDAIEYAKKHN 257 (493)
Q Consensus 243 l~sKeEi~~yA~~~G 257 (493)
+|.|++++|+..+
T Consensus 510 --~K~eVr~lar~l~ 522 (680)
T 3sdb_A 510 --PKTLIQHLIRWVI 522 (680)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHH
Confidence 7999999888763
No 39
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.74 E-value=4.5e-08 Score=106.35 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=76.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCe--------------EEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHH-
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCE--------------VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEE- 160 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~e--------------Viavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ee- 160 (493)
.+|++++|||+||++++.++++. +.+ +.++++..... .|.+.|+++|+.+|+ +|+++++..+
T Consensus 227 vpvgv~LSGGlDSS~iaala~~~-~~~~~~~~~~~~a~~~~l~tfsig~~~~-~E~~~A~~vA~~lg~-~h~~i~~~~~~ 303 (553)
T 1ct9_A 227 VPYGVLLSGGLDSSIISAITKKY-AARRVEDQERSEAWWPQLHSFAVGLPGS-PDLKAAQEVANHLGT-VHHEIHFTVQE 303 (553)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH-C----------------CEEEEEESTTC-HHHHHHHHHHHHHTC-EEEEEECCHHH
T ss_pred CceEEeCCCCccHHHHHHHHHHh-hccccccccccccccCceeEEEecCCCC-cHHHHHHHHHHHhCC-CCEEEECCHHH
Confidence 58999999999999999999886 433 77888866432 689999999999999 8999999743
Q ss_pred HHHhhhhhHHHhCccccCcccccccCcH-HHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 161 FVKDYIFPCLRAGAIYERKYLLGTSMAR-PVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 161 f~~~~i~~~i~~~a~y~g~y~~~~~~~R-~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
+.+ .+.+.+... +. +.. ++.| .+....+.+.|++.|+++|++|+.+
T Consensus 304 ~~~-~l~~~i~~~---~~--~~~-~~~~~~~~~~~l~~~a~~~g~~vvLsG~Ga 350 (553)
T 1ct9_A 304 GLD-AIRDVIYHI---ET--YDV-TTIRASTPMYLMSRKIKAMGIKMVLSGEGS 350 (553)
T ss_dssp HHH-HHHHHHHHH---CC--CCH-HHHHHHHHHHHHHHHHHHTTCCEEECCTTH
T ss_pred HHH-HHHHHHHHh---cC--CCc-ccchHHHHHHHHHHHHHHcCCeEEEECCCc
Confidence 433 344444321 11 111 0112 1223567788899999999999864
No 40
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.66 E-value=1e-07 Score=102.42 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=75.0
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHH-HHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEE-FVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ee-f~~~~i~~~i~~~a 174 (493)
.+|++++|||+||++++.++++. +.++.++++.... .+|.+.|+++|+.+|+ +|+++++.++ +.+. +...+...
T Consensus 239 ~~v~v~LSGGlDSs~vaala~~~-~~~~~~~t~~~~~-~~E~~~A~~vA~~lg~-~h~~i~~~~~~~~~~-l~~~~~~~- 313 (503)
T 1q15_A 239 DTVGIPLSGGLDSSLVTALASRH-FKKLNTYSIGTEL-SNEFEFSQQVADALGT-HHQMKILSETEVING-IIESIYYN- 313 (503)
T ss_dssp SEEEEECCSSHHHHHHHHHHTTT-CSEEEEEEEEETT-BCCHHHHHHHHHHHTC-EEEEEEECHHHHHHH-HHHHHHHH-
T ss_pred CcEEEECCCCHHHHHHHHHHHHh-CCCcEEEEEeCCC-ccHHHHHHHHHHHhCC-ceEEEECCHHHHHHH-HHHHHHHh-
Confidence 68999999999999999998886 7789999998764 3789999999999999 8999998743 4332 22222211
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
. .+.++..+-.+....+.+.| +.|++++.||+.+
T Consensus 314 ---~-~~~p~~~~~~~~~~~l~~~a-~~~~~VvltG~Ga 347 (503)
T 1q15_A 314 ---E-IFDGLSAEIQSGLFNVYRQA-QGQVSCMLTGYGS 347 (503)
T ss_dssp ---C-CCCHHHHHHHHHHHHHHHHH-BTTBSEEECCTTH
T ss_pred ---c-CCCcccchhHHHHHHHHHHH-HCCCCEEEeCCCh
Confidence 1 01111101112233556666 5799999999854
No 41
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.66 E-value=6.1e-08 Score=104.46 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=74.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcH-HHHHhhhhhHHHhCc
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKE-EFVKDYIFPCLRAGA 174 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~e-ef~~~~i~~~i~~~a 174 (493)
.+|++++|||+||++++.++++. +.++.++++.... .+|.+.|+++|+.+|+ +|+++++.+ ++.+. +...+...
T Consensus 242 ~~vgv~LSGGlDSS~vaala~~~-~~~v~tfti~~~~-~~E~~~A~~vA~~lg~-~h~~i~i~~~~~~~~-l~~~~~~~- 316 (513)
T 1jgt_A 242 DTPLVVLSGGIDSSGVAACAHRA-AGELDTVSMGTDT-SNEFREARAVVDHLRT-RHREITIPTTELLAQ-LPYAVWAS- 316 (513)
T ss_dssp CCCEEECCSSHHHHHHHHHHHHH-HSSCEEEEEECSS-CCCHHHHHHHHHHHTC-EEEEEECCHHHHHTT-HHHHHHHH-
T ss_pred CcEEEECCCcHHHHHHHHHHHHh-CCCceEEEcCCCC-CCHHHHHHHHHHHhCC-CcEEEECCHHHHHHH-HHHHHHHh-
Confidence 58999999999999999999886 5678888887754 3789999999999999 899999985 35432 33333221
Q ss_pred cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
+ .+.++..+..+....+.+.| +.|++++.||+.+
T Consensus 317 ---~-~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~Ga 350 (513)
T 1jgt_A 317 ---E-SVDPDIIEYLLPLTALYRAL-DGPERRILTGYGA 350 (513)
T ss_dssp ---C-CCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTT
T ss_pred ---C-CCCcccchhHHHHHHHHHHH-HcCCCEEEeCCCh
Confidence 1 11121111112223445555 6899999999854
No 42
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.66 E-value=1e-07 Score=96.13 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=91.9
Q ss_pred ccccCCCCCCCCEEEEEEcCChHHHHHHHHHHHcc---------------------CCeEEEEEEecCCC-cccHHHHHH
Q 011097 85 PKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENY---------------------GCEVVCFTADVGQG-IKELDGLEE 142 (493)
Q Consensus 85 ~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e~~---------------------G~eViavtid~Gq~-~ed~e~a~~ 142 (493)
+..+++.+ ++++++++|||+||+|+++++.+.+ ...+-.+++|.|.. .+.++.+.+
T Consensus 50 a~~~f~~~--~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~ 127 (308)
T 3fwk_A 50 TFPKWSPL--NGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEE 127 (308)
T ss_dssp TTTTSCSS--SSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHH
T ss_pred HHHHcccc--cCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHH
Confidence 55555432 3679999999999999999987641 13677899999975 477889999
Q ss_pred HHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHc-CCcEeeeCCCCCCCChHHH
Q 011097 143 KAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREV-GADAVAHGCTGKGNDQVRF 221 (493)
Q Consensus 143 ~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~-Gad~IAtGhn~~gnD~~r~ 221 (493)
+++++|+ +++++.-.. . +..+ ..+-++-+.. +.+++.+|.-.. +..|-
T Consensus 128 ~~~~ygL-~L~v~~p~~--~-----~~~~---------------------~~cc~~~K~~P~~~AwitG~RR~--e~~Ra 176 (308)
T 3fwk_A 128 TSLRYSL-SLYESDRDK--C-----ETMA---------------------EAFETFLQVFPETKAIVIGIRHT--DPFGE 176 (308)
T ss_dssp HHHHTTE-EEEECCTTS--C-----CCHH---------------------HHHHHHHHHCTTCCEEECCCCTT--STTCT
T ss_pred HHHHhCC-cEEEeCCCC--C-----HHHH---------------------HHHHHHHHhCCCCCEEEEEeecC--CcccC
Confidence 9999999 777754320 0 0000 1111222233 689999997432 32221
Q ss_pred HH-HHHhc---CCCCeEEeccccCCCCCHHHHHHHHHHCCCCCC
Q 011097 222 EL-TFFAL---NPELNVVAPWREWDIQGREDAIEYAKKHNVPVP 261 (493)
Q Consensus 222 ~~-~~~~l---~p~i~ii~PLr~~~l~sKeEi~~yA~~~GIp~~ 261 (493)
.. .+..- .|+.-.+.|+.+| |..||..|...++||+.
T Consensus 177 ~l~~~e~~d~~w~~~iKVnPL~dW---T~~DVW~YI~~~~LPyn 217 (308)
T 3fwk_A 177 HLKPIQKTDANWPDFYRLQPLLHW---NLANIWSFLLYSNEPIC 217 (308)
T ss_dssp TCCSEEECCTTSCSCEEECTTTTC---CHHHHHHHHHHHTCCCC
T ss_pred CCCeeeccCCCCCCeEEEechhhC---CHHHHHHHHHHcCCCCC
Confidence 11 01101 1356788999999 79999999999999984
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.22 E-value=4.3e-06 Score=91.10 Aligned_cols=148 Identities=11% Similarity=0.170 Sum_probs=96.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHccC-CeEEEEEEec-CCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHh
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRENYG-CEVVCFTADV-GQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~~G-~eViavtid~-Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~ 172 (493)
.++++|++|||+||++++.+..+.+| ..|.++++-. +......+.++++|+.+|+ .+..+++.+.+. .+ ...+..
T Consensus 300 ~~~~vlglSGGiDSal~~~la~~alg~~~v~~v~mp~~~ts~~t~~~a~~la~~lg~-~~~~i~i~~~~~-~~-~~~~~~ 376 (565)
T 4f4h_A 300 FPGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAADMARRVGV-RYDEIAIAPMFD-AF-RASLAA 376 (565)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCTTCCHHHHHHHHHHHHHHTC-EEEECCCHHHHH-HH-HHHHTT
T ss_pred CCcEEEecCCCccHHHHHHHHHHHhCCccEEEEeccccccccchHHHHHHHHHHhCC-ceeeeecchHHH-HH-HHHhhh
Confidence 36899999999999999988877666 4788998754 2334678899999999999 899999975443 11 111111
Q ss_pred CccccCccccccc---CcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCC-CCeEEeccccCCCCCHHH
Q 011097 173 GAIYERKYLLGTS---MARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNP-ELNVVAPWREWDIQGRED 248 (493)
Q Consensus 173 ~a~y~g~y~~~~~---~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p-~i~ii~PLr~~~l~sKeE 248 (493)
. ..+ .....+ +--.+|...|..+|.+.|.=++.||. ...+...+..+.. ..--+.|+.+. +|.+
T Consensus 377 ~--~~~-~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn------~sE~a~Gy~T~~Gd~~~~~~pi~~l---~Kt~ 444 (565)
T 4f4h_A 377 E--FAG-LAEDATEENIQARIRGTLLMALSNKFGSIVLTTGN------KSEMAVGYCTLYGDMAGGFAVIKDI---AKTL 444 (565)
T ss_dssp T--TTT-CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC------HHHHHHTCSCTTTTTCSSEETTTTC---CHHH
T ss_pred c--ccC-ccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCc------hhhHhhccccccCCcccCchhccCc---cHHH
Confidence 0 000 000000 11134567888999999998888873 2222222222221 24568999986 7999
Q ss_pred HHHHHHHCC
Q 011097 249 AIEYAKKHN 257 (493)
Q Consensus 249 i~~yA~~~G 257 (493)
+..+++-.+
T Consensus 445 v~~l~~~~~ 453 (565)
T 4f4h_A 445 VYRLCRYRN 453 (565)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887755
No 44
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=84.93 E-value=9.3 Score=32.76 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=29.0
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEe
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTAD 129 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid 129 (493)
.++|+|++.|...|.-++.+..+. .|.+++.+|+-
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~ 42 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVI 42 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 479999999999999888887653 37899999984
No 45
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=84.20 E-value=2.8 Score=35.44 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=46.1
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecCCC----------------cccHHHHHHHHHHcCCceEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVGQG----------------IKELDGLEEKAKASGACQLVVK 155 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~Gq~----------------~ed~e~a~~~A~~LGI~~~~Vv 155 (493)
..||+|+.+||.=|+.++.-+++. .|.++......++.- .-..+.+++.|+..|+ |..++
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~i-pV~vI 84 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGI-QIVAT 84 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTC-EEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCC-cEEEe
Confidence 468999999999888888777542 377666655444321 1346788899999999 89999
Q ss_pred cCc
Q 011097 156 DLK 158 (493)
Q Consensus 156 Dl~ 158 (493)
|..
T Consensus 85 ~~~ 87 (108)
T 3nbm_A 85 RGM 87 (108)
T ss_dssp CHH
T ss_pred CHH
Confidence 874
No 46
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=83.97 E-value=4.6 Score=33.90 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=28.2
Q ss_pred CEEEEEEcCChHHHHHHHHHHH---ccCCeEEEEEEec
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRE---NYGCEVVCFTADV 130 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e---~~G~eViavtid~ 130 (493)
++|+|++.|...|.-++.+..+ ..+.+++.+|+..
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 40 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFK 40 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 6899999999999888777643 2489999999853
No 47
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=81.43 E-value=8.4 Score=33.40 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=28.7
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEe
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTAD 129 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid 129 (493)
.++|+|++.|..+|.-++.+..+. .|.+|+.+|+.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~ 42 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVI 42 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEE
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 479999999999998888777553 37899999974
No 48
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=76.74 E-value=16 Score=34.73 Aligned_cols=91 Identities=21% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecCC-CcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhH
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVGQ-GIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPC 169 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~ 169 (493)
..++|++++.|...|.-++.++.+. .+.+|..+++.... ..+.++.+++.++..|+ +..+.-..
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~----------- 236 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGI-EVHVHIES----------- 236 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTC-CEEEEEEC-----------
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCC-cEEEEEec-----------
Confidence 3479999999999988777776542 37899999986543 22456677777777787 43221110
Q ss_pred HHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCC
Q 011097 170 LRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKG 215 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~g 215 (493)
| . ....+.++|++.++|.|+.|..+.+
T Consensus 237 --------g-----~------~~~~I~~~a~~~~~dLlV~G~~~~~ 263 (294)
T 3loq_A 237 --------G-----T------PHKAILAKREEINATTIFMGSRGAG 263 (294)
T ss_dssp --------S-----C------HHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred --------C-----C------HHHHHHHHHHhcCcCEEEEeCCCCC
Confidence 1 0 1246778999999999999987653
No 49
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=75.35 E-value=14 Score=31.94 Aligned_cols=90 Identities=21% Similarity=0.144 Sum_probs=55.9
Q ss_pred CEEEEEEcC-ChHHHHHHHHHHH---ccCCeEEEEEEecCCCc----------ccHHHHHHHHHHcCCceEEEEcCcHHH
Q 011097 96 NKVVLAYSG-GLDTSVIVPWLRE---NYGCEVVCFTADVGQGI----------KELDGLEEKAKASGACQLVVKDLKEEF 161 (493)
Q Consensus 96 ~KVvVA~SG-G~DSsvll~~L~e---~~G~eViavtid~Gq~~----------ed~e~a~~~A~~LGI~~~~VvDl~eef 161 (493)
++|+|++.| ...|.-++.+..+ ..+.+|+.+++...... +.++.+.+.++..|+ +..+.-.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~-~~~~~~~---- 99 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGA-EGEEHLL---- 99 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEE----
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCC-CceEEEE----
Confidence 589999999 8888888777643 23789999998654311 122333344444454 2222100
Q ss_pred HHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC
Q 011097 162 VKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK 214 (493)
Q Consensus 162 ~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~ 214 (493)
...|. ....+.++|++.++|.|+.|..+.
T Consensus 100 ------------------v~~G~------~~~~I~~~a~~~~~DLIV~G~~g~ 128 (155)
T 3dlo_A 100 ------------------VRGKE------PPDDIVDFADEVDAIAIVIGIRKR 128 (155)
T ss_dssp ------------------ESSSC------HHHHHHHHHHHTTCSEEEEECCEE
T ss_pred ------------------ecCCC------HHHHHHHHHHHcCCCEEEECCCCC
Confidence 00010 124678899999999999998654
No 50
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=75.27 E-value=17 Score=30.96 Aligned_cols=35 Identities=6% Similarity=0.137 Sum_probs=27.5
Q ss_pred CEEEEEEc--CChHHHHHHHHHHH---ccCCeEEEEEEec
Q 011097 96 NKVVLAYS--GGLDTSVIVPWLRE---NYGCEVVCFTADV 130 (493)
Q Consensus 96 ~KVvVA~S--GG~DSsvll~~L~e---~~G~eViavtid~ 130 (493)
++|+|++. |...|--++.+..+ ..+.+++.+|+-.
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 55 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLE 55 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEe
Confidence 68999999 99999888877643 2488999999854
No 51
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=74.37 E-value=8.8 Score=32.38 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=28.4
Q ss_pred CCEEEEEEcCChHHHHHHHHHHH---ccCCeEEEEEEe
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRE---NYGCEVVCFTAD 129 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e---~~G~eViavtid 129 (493)
.++|+|++.|...|.-++.+..+ ..+.+++.+|+.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~ 43 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVL 43 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEE
Confidence 37999999999999888877643 238899999985
No 52
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=74.10 E-value=19 Score=31.26 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc--cCCeEEEE--EE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN--YGCEVVCF--TA 128 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~--~G~eViav--ti 128 (493)
.++|+|++.|...|.-++.+..+. .+.+++.+ ++
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~~~a~l~ll~a~v 54 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYL 54 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 479999999999998877765332 47899999 54
No 53
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=74.03 E-value=14 Score=30.93 Aligned_cols=35 Identities=0% Similarity=-0.063 Sum_probs=28.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHH---ccCCeEEEEEEec
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRE---NYGCEVVCFTADV 130 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e---~~G~eViavtid~ 130 (493)
++|+|++.|...|.-++.+..+ ..|.+++.+|+-.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 43 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVD 43 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 6899999999999888777643 2488999999854
No 54
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=72.40 E-value=20 Score=29.71 Aligned_cols=34 Identities=6% Similarity=0.124 Sum_probs=27.2
Q ss_pred CEEEEEEcCChHHHHHHHHHHH---ccCCeEEEEEEe
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRE---NYGCEVVCFTAD 129 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e---~~G~eViavtid 129 (493)
++|+|++.|...|.-++.+..+ ..|.+++.+|+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 39 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 6899999999999877766543 237899999985
No 55
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=71.25 E-value=16 Score=30.15 Aligned_cols=36 Identities=8% Similarity=0.209 Sum_probs=28.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHH----ccCCeEEEEEEecC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRE----NYGCEVVCFTADVG 131 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e----~~G~eViavtid~G 131 (493)
++|+|++.|...|.-++.+..+ ..+.+++.+|+...
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~ 41 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPE 41 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Confidence 6899999999999888777643 34789999998654
No 56
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=70.18 E-value=17 Score=34.51 Aligned_cols=91 Identities=4% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCCEEEEEEcCChHHHHHHHHHH---HccCCeEEEEEEecCCC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhH
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFTADVGQG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPC 169 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~---e~~G~eViavtid~Gq~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~ 169 (493)
..++|+|++.|...|..++.+.. +..|.+++.+++..... .+.++.+.+.+...|+ +....-..
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~----------- 73 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRDHSAALNDLAQELREEGY-SVSTNQAW----------- 73 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSCCHHHHHHHHHHHHHTTC-CEEEEEEC-----------
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHHHHHHHHHHHHHHhhCCC-eEEEEEEe-----------
Confidence 35799999999888777666553 33488999999965321 2345555566666677 43332110
Q ss_pred HHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCC
Q 011097 170 LRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGK 214 (493)
Q Consensus 170 i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~ 214 (493)
.+. ....+.+.|++.++|.|..|..+.
T Consensus 74 ------------~g~------~~~~i~~~a~~~~~dliV~G~~~~ 100 (290)
T 3mt0_A 74 ------------KDS------LHQTIIAEQQAEGCGLIIKQHFPD 100 (290)
T ss_dssp ------------SSS------HHHHHHHHHHHHTCSEEEEECCCS
T ss_pred ------------CCC------HHHHHHHHHHhcCCCEEEEecccC
Confidence 000 023567788999999999998654
No 57
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=68.31 E-value=11 Score=35.29 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=36.8
Q ss_pred CEEEEEEcCChHHHH-HHHHHHHccCC--eEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 96 NKVVLAYSGGLDTSV-IVPWLRENYGC--EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 96 ~KVvVA~SGG~DSsv-ll~~L~e~~G~--eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
+||++.+||.-+-+. ++..|.+. ++ +|++|..+-.. ..+++.|++.|| |.++++-
T Consensus 2 ~rI~vl~SG~g~~~~~~l~~l~~~-~~~~~i~~Vvs~~~~-----~~~~~~A~~~gI-p~~~~~~ 59 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAIESG-KVNASIELVISDNPK-----AYAIERCKKHNV-ECKVIQR 59 (216)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHTT-SSCEEEEEEEESCTT-----CHHHHHHHHHTC-CEEECCG
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhC-CCCCeEEEEEeCCCC-----hHHHHHHHHcCC-CEEEeCc
Confidence 589999999765433 33444443 45 88888765321 246788999999 7777654
No 58
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=67.29 E-value=12 Score=35.35 Aligned_cols=55 Identities=20% Similarity=0.145 Sum_probs=36.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
+.||+|..||.--.+ -.++... ++++|++|..|-. ..+.+.|+++|| |.+.++.+
T Consensus 12 ~~ri~vl~SG~gsnl--~all~~~~~~~~~eI~~Vis~~~------a~~~~~A~~~gI-p~~~~~~~ 69 (215)
T 3da8_A 12 PARLVVLASGTGSLL--RSLLDAAVGDYPARVVAVGVDRE------CRAAEIAAEASV-PVFTVRLA 69 (215)
T ss_dssp SEEEEEEESSCCHHH--HHHHHHSSTTCSEEEEEEEESSC------CHHHHHHHHTTC-CEEECCGG
T ss_pred CcEEEEEEeCChHHH--HHHHHHHhccCCCeEEEEEeCCc------hHHHHHHHHcCC-CEEEeCcc
Confidence 358999999984332 2333321 2468988876532 346788999999 78888764
No 59
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=65.59 E-value=27 Score=30.23 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCh---------HHHHHHHHHHHc------cCCeEEEEEEe
Q 011097 95 LNKVVLAYSGGL---------DTSVIVPWLREN------YGCEVVCFTAD 129 (493)
Q Consensus 95 ~~KVvVA~SGG~---------DSsvll~~L~e~------~G~eViavtid 129 (493)
.++|+|++.|.. .|.-++.+..+. .+.+++.+|+.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~ 54 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQ 54 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEE
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEe
Confidence 368999999998 887777776552 25689999884
No 60
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=61.95 E-value=17 Score=33.99 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=37.9
Q ss_pred CCEEEEEEcCChHHHHHH-HHHHHc-cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 95 LNKVVLAYSGGLDTSVIV-PWLREN-YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll-~~L~e~-~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
|+||+|.+||.-+-+..+ ..|.+. ++++|++|..|-. + ..+++.|+++|| |.++++-
T Consensus 3 m~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~----~-~~v~~~A~~~gI-p~~~~~~ 61 (212)
T 3av3_A 3 MKRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRP----G-AKVIERAARENV-PAFVFSP 61 (212)
T ss_dssp CEEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESST----T-CHHHHHHHHTTC-CEEECCG
T ss_pred CcEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCC----C-cHHHHHHHHcCC-CEEEeCc
Confidence 468999999986654332 333332 2578888876522 1 257788999999 7777654
No 61
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=59.82 E-value=26 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=27.2
Q ss_pred CEEEEEEcCChH--HHHHHHHHH---HccCCeEEEEEEecC
Q 011097 96 NKVVLAYSGGLD--TSVIVPWLR---ENYGCEVVCFTADVG 131 (493)
Q Consensus 96 ~KVvVA~SGG~D--Ssvll~~L~---e~~G~eViavtid~G 131 (493)
++|+|++.|... |.-++.+.. +..|.+++.+|+-..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~ 42 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPS 42 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence 689999999988 776666653 224889999998643
No 62
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=57.22 E-value=79 Score=25.85 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=27.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHH---ccCCeEEEEEEec
Q 011097 96 NKVVLAYSGGLDTSVIVPWLRE---NYGCEVVCFTADV 130 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e---~~G~eViavtid~ 130 (493)
++|+|++.|...|.-++.+..+ ..|.+++.+|+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 40 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYE 40 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEec
Confidence 6899999999999877766543 2488999999864
No 63
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=52.84 E-value=36 Score=32.23 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=37.0
Q ss_pred CCEEEEEEcCChHHHHHH-HHHHHc-cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 95 LNKVVLAYSGGLDTSVIV-PWLREN-YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll-~~L~e~-~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
++||++.+||.-+-+..+ ..|.+. ++++|++|..+-. + ..+++.|+++|| |.++++-
T Consensus 22 ~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~----~-~~~~~~A~~~gI-p~~~~~~ 80 (229)
T 3auf_A 22 MIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRA----D-AYGLERARRAGV-DALHMDP 80 (229)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESST----T-CHHHHHHHHTTC-EEEECCG
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCC----c-hHHHHHHHHcCC-CEEEECc
Confidence 469999999986543322 233332 2578888876522 1 246788999999 7877654
No 64
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=51.88 E-value=45 Score=31.47 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=27.5
Q ss_pred CCCEEEEEEcCChH-------HHHHHHHHHH---ccCCeEEEEEEecC
Q 011097 94 KLNKVVLAYSGGLD-------TSVIVPWLRE---NYGCEVVCFTADVG 131 (493)
Q Consensus 94 ~~~KVvVA~SGG~D-------Ssvll~~L~e---~~G~eViavtid~G 131 (493)
+.++|+|++.|.-. |.-++.+..+ ..+.+++.+|+...
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~ 180 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPS 180 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 35799999999987 6666655532 24889999998643
No 65
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=48.88 E-value=51 Score=32.60 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=62.8
Q ss_pred cChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHH----ccCCeEEEEEEecCCCcccHHHH
Q 011097 65 ACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRE----NYGCEVVCFTADVGQGIKELDGL 140 (493)
Q Consensus 65 lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e----~~G~eViavtid~Gq~~ed~e~a 140 (493)
...+.|.+.++.-..+. .-.++-.. ..+.+||+|..||. +|. +-.+|.. .++.+|.+|..|.. + +
T Consensus 77 ~~~~~L~~~l~~la~~l-~m~~~l~~-~~~~~ri~vl~Sg~-g~n-l~~ll~~~~~g~l~~~I~~Visn~~----~---~ 145 (302)
T 3o1l_A 77 FDLDGFREAFTPIAEEF-SMDWRITD-SAQKKRVVLMASRE-SHC-LADLLHRWHSDELDCDIACVISNHQ----D---L 145 (302)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEEE-TTSCCEEEEEECSC-CHH-HHHHHHHHHTTCSCSEEEEEEESSS----T---T
T ss_pred CCHHHHHHHHHHHHHHh-CCeeeecc-cCCCcEEEEEEeCC-chh-HHHHHHHHHCCCCCcEEEEEEECcH----H---H
Confidence 45666777766543220 00111111 12346999999998 553 3444432 13579998887643 2 3
Q ss_pred HHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 141 EEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 141 ~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
+++|++.|| |++.++.+.. +|.---..+.+..++.++|.|......
T Consensus 146 ~~~A~~~gI-p~~~~~~~~~--------------------------~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 146 RSMVEWHDI-PYYHVPVDPK--------------------------DKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHHHTTTC-CEEECCCCSS--------------------------CCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCC-CEEEcCCCcC--------------------------CHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 467999999 7888764310 000001235566678899998876543
No 66
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=43.04 E-value=33 Score=27.96 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=25.4
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEE
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVV 124 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eVi 124 (493)
.+.++|++-..+|.-|..++.+|++. ||+++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~-G~~~~ 84 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEAN-GIDAV 84 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTT-TCEEE
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHc-CCCEE
Confidence 34567888777888999999999987 99875
No 67
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=42.13 E-value=36 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEE
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVV 124 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eVi 124 (493)
.+.++|++-..+|..|..++.+|++. ||+|.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~-G~~v~ 84 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQN-GVNAV 84 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTT-TCEEE
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHC-CCCEE
Confidence 34578888888999999999999886 99654
No 68
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=41.30 E-value=37 Score=31.17 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred CEEEEEEcCChHHHHHHHHH---HHccCCeEEEEE
Q 011097 96 NKVVLAYSGGLDTSVIVPWL---RENYGCEVVCFT 127 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L---~e~~G~eViavt 127 (493)
+||+|++||+..+.-+..++ ++. |++|..+.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 68999999997766555444 454 89987665
No 69
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=40.87 E-value=20 Score=33.48 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCCEEEEEEcCChHHH-HH---HHHHHHccCCeEEEEEEecCC
Q 011097 94 KLNKVVLAYSGGLDTS-VI---VPWLRENYGCEVVCFTADVGQ 132 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSs-vl---l~~L~e~~G~eViavtid~Gq 132 (493)
+++||+|++||+.-.. -. +..|++. |++|..+.-+-++
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~-g~eV~vv~T~~A~ 47 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVEL-GAKVTPFVTHTVQ 47 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHT-TCEEEEECSSCSC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhC-CCEEEEEEChhHH
Confidence 4589999999996544 23 4455565 9999876654443
No 70
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=40.39 E-value=65 Score=30.17 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=36.7
Q ss_pred CCEEEEEEcCChHHHHHHHHHHH--c--cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRE--N--YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e--~--~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
|+||+|..||+ .|..-+ ++.. . +..+|.+|..|-.. ..+++.|+++|| |.++++.
T Consensus 2 m~riavl~Sg~-Gsnl~a-li~~~~~~~l~~eI~~Visn~~~-----a~v~~~A~~~gI-p~~~~~~ 60 (211)
T 3p9x_A 2 MKRVAIFASGS-GTNAEA-IIQSQKAGQLPCEVALLITDKPG-----AKVVERVKVHEI-PVCALDP 60 (211)
T ss_dssp -CEEEEECCTT-CHHHHH-HHHHHHTTCCSSEEEEEEESCSS-----SHHHHHHHTTTC-CEEECCG
T ss_pred CCEEEEEEeCC-chHHHH-HHHHHHcCCCCcEEEEEEECCCC-----cHHHHHHHHcCC-CEEEeCh
Confidence 46899999997 454333 3321 1 24689888876321 257789999999 7877654
No 71
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=40.20 E-value=1.1e+02 Score=29.74 Aligned_cols=111 Identities=19% Similarity=0.129 Sum_probs=62.2
Q ss_pred cChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHH--c--cCCeEEEEEEecCCCcccHHHH
Q 011097 65 ACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRE--N--YGCEVVCFTADVGQGIKELDGL 140 (493)
Q Consensus 65 lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e--~--~G~eViavtid~Gq~~ed~e~a 140 (493)
...+.|.+.++.-..+. .-.++-.. ..+..||+|..||. +|. +-.+|.. . +..+|.+|.-|.. + +
T Consensus 62 ~~~~~L~~~f~~la~~l-~m~~~l~~-~~~~~ri~vl~Sg~-g~~-l~~ll~~~~~g~l~~~i~~Visn~~----~---~ 130 (286)
T 3n0v_A 62 FDEAGFRAGLAERSEAF-GMAFELTA-PNHRPKVVIMVSKA-DHC-LNDLLYRQRIGQLGMDVVAVVSNHP----D---L 130 (286)
T ss_dssp CCHHHHHHHHHHHHGGG-TCEEEEEC-TTCCCEEEEEESSC-CHH-HHHHHHHHHTTSSCCEEEEEEESSS----T---T
T ss_pred CCHHHHHHHHHHHHHHc-CCEEEeec-CCCCcEEEEEEeCC-CCC-HHHHHHHHHCCCCCcEEEEEEeCcH----H---H
Confidence 44566777766543220 00011111 12346999999998 443 3334432 1 3479998887643 2 3
Q ss_pred HHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 141 EEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 141 ~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
+.+|++.|| |++.++.+.. +|.---..+.+..++.++|.|......
T Consensus 131 ~~~A~~~gI-p~~~~~~~~~--------------------------~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 131 EPLAHWHKI-PYYHFALDPK--------------------------DKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHHHTTC-CEEECCCBTT--------------------------BHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCC-CEEEeCCCcC--------------------------CHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 466999999 7888765310 010001234566678899998886554
No 72
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=39.95 E-value=31 Score=32.27 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCChHHH----HHHHHHHHccCCeEEEEEEecCC
Q 011097 94 KLNKVVLAYSGGLDTS----VIVPWLRENYGCEVVCFTADVGQ 132 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSs----vll~~L~e~~G~eViavtid~Gq 132 (493)
+++||+|++|||.-.. -++..|++. |++|..+.-.-++
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~-g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAE-GAEVRPVVSYTVQ 45 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHT-TCEEEEEECC---
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhC-CCEEEEEEehHHH
Confidence 3579999999997433 234445555 9999877655443
No 73
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=39.45 E-value=41 Score=26.78 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=25.2
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEE
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVV 124 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eVi 124 (493)
.+.++|++-..+|..|..++.+|++. ||+|.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~-G~~v~ 84 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEAN-GIDAV 84 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTT-TCEEE
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHC-CCCeE
Confidence 34578888888899999999999886 99654
No 74
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=38.47 E-value=98 Score=29.28 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCcEeeeCCCCCCC
Q 011097 192 AKAMVDVAREVGADAVAHGCTGKGN 216 (493)
Q Consensus 192 ~~~l~~~A~e~Gad~IAtGhn~~gn 216 (493)
...+.++|++.++|.|+.|.++++.
T Consensus 255 ~~~I~~~a~~~~~dLiV~G~~g~~~ 279 (319)
T 3olq_A 255 EQVIPQVCEELNAGIVVLGILGRTG 279 (319)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSCCS
T ss_pred HHHHHHHHHHhCCCEEEEeccCccC
Confidence 3578899999999999999876543
No 75
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=37.92 E-value=78 Score=29.65 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=50.3
Q ss_pred CEEEEEEcCChHHHHHHHHHH--Hc-cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHh
Q 011097 96 NKVVLAYSGGLDTSVIVPWLR--EN-YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRA 172 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~--e~-~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~ 172 (493)
.||+|..||.= |..-+ ++. +. ++++|++|..|-.. ....+.|+++|| |.++++.++ |.
T Consensus 6 ~riavl~SG~G-snl~a-ll~~~~~~~~~eI~~Vis~~~~-----a~~~~~A~~~gI-p~~~~~~~~-~~---------- 66 (215)
T 3tqr_A 6 LPIVVLISGNG-TNLQA-IIGAIQKGLAIEIRAVISNRAD-----AYGLKRAQQADI-PTHIIPHEE-FP---------- 66 (215)
T ss_dssp EEEEEEESSCC-HHHHH-HHHHHHTTCSEEEEEEEESCTT-----CHHHHHHHHTTC-CEEECCGGG-SS----------
T ss_pred cEEEEEEeCCc-HHHHH-HHHHHHcCCCCEEEEEEeCCcc-----hHHHHHHHHcCC-CEEEeCccc-cC----------
Confidence 58999999973 43322 222 22 35789988876321 133578999999 788876431 10
Q ss_pred CccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 173 GAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 173 ~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
.|.-.-..+.+..++.++|.|.....+
T Consensus 67 --------------~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 67 --------------SRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp --------------SHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred --------------chhHhHHHHHHHHHhcCCCEEEEccch
Confidence 011001234566677889988776543
No 76
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=37.45 E-value=66 Score=30.28 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=26.7
Q ss_pred CCEEEEEEcCChHHHHHHHHHH---HccCCeEEEEEEe
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFTAD 129 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~---e~~G~eViavtid 129 (493)
.++|+|++.|...|..++.+.. +..+.+++.+++-
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~ 59 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVI 59 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCE
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEe
Confidence 4799999999988876665543 3358899999974
No 77
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=37.16 E-value=49 Score=31.02 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=35.2
Q ss_pred CCEEEEEEcCChHHHHHHHHHHH--c--cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLRE--N--YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e--~--~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
+.||+|.+||.- |... .+|.. . ++++|++|..|-... ...+.|++.|| |.++++-
T Consensus 8 ~~ri~vl~SG~g-snl~-all~~~~~~~~~~~I~~Vis~~~~a-----~~l~~A~~~gI-p~~~~~~ 66 (215)
T 3kcq_A 8 ELRVGVLISGRG-SNLE-ALAKAFSTEESSVVISCVISNNAEA-----RGLLIAQSYGI-PTFVVKR 66 (215)
T ss_dssp CEEEEEEESSCC-HHHH-HHHHHTCCC-CSEEEEEEEESCTTC-----THHHHHHHTTC-CEEECCB
T ss_pred CCEEEEEEECCc-HHHH-HHHHHHHcCCCCcEEEEEEeCCcch-----HHHHHHHHcCC-CEEEeCc
Confidence 468999999984 4322 23322 1 236898888763221 13578999999 7887754
No 78
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=36.77 E-value=1.1e+02 Score=28.39 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=35.3
Q ss_pred CEEEEEEcCChHHHHHHHHHH---H-ccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLR---E-NYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~---e-~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
+||+|..||+- |. +-.++. + .++++|++|..+-.. ..+++.|+++|| |.+.++-
T Consensus 1 ~ri~vl~Sg~g-sn-l~ali~~~~~~~~~~~i~~Vis~~~~-----~~~~~~A~~~gI-p~~~~~~ 58 (212)
T 1jkx_A 1 MNIVVLISGNG-SN-LQAIIDACKTNKIKGTVRAVFSNKAD-----AFGLERARQAGI-ATHTLIA 58 (212)
T ss_dssp CEEEEEESSCC-HH-HHHHHHHHHTTSSSSEEEEEEESCTT-----CHHHHHHHHTTC-EEEECCG
T ss_pred CEEEEEEECCc-HH-HHHHHHHHHcCCCCceEEEEEeCCCc-----hHHHHHHHHcCC-cEEEeCc
Confidence 38999999976 32 222332 2 135799988876321 235788999999 7877653
No 79
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=36.64 E-value=82 Score=29.25 Aligned_cols=56 Identities=18% Similarity=0.093 Sum_probs=35.8
Q ss_pred CEEEEEEcCChHHHHHHHHH-HH-ccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 96 NKVVLAYSGGLDTSVIVPWL-RE-NYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L-~e-~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
+||+|.+||+-=++-++.-. ++ .++++|++|..+-.. ...++.|++.|| |.++++.
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~-----~~~~~~A~~~gI-p~~~~~~ 58 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAA-----VAGLDKAERAGI-PTRVINH 58 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTT-----CHHHHHHHHTTC-CEEECCG
T ss_pred CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCCC-----hHHHHHHHHcCC-CEEEECc
Confidence 48999999986333322211 11 136899998876422 134688999999 7877654
No 80
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=35.31 E-value=92 Score=29.48 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=26.7
Q ss_pred CCEEEEEEcCChHHHHHHHHHH---HccCCeEEEEEEe
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFTAD 129 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~---e~~G~eViavtid 129 (493)
+++|+|++.|...|..++.+.. +..+.+++.+++-
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~ 44 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPV 44 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEE
T ss_pred cceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 4799999999988766665542 3348999999984
No 81
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=34.07 E-value=52 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.0
Q ss_pred CCEEEEEEcCChHHHHHHHHHH---HccCCeEEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFT 127 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~---e~~G~eViavt 127 (493)
++||+|++||+.-+.-+..+++ +. |++|..+.
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~~-g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQE-EREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 4799999999988877766664 44 89987665
No 82
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=33.84 E-value=1.3e+02 Score=28.01 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=50.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHc--cCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLREN--YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 173 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~--~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~ 173 (493)
.||+|.+||.---...+.-..+. +.++|++|..|-... ...+.|++.|| |.++++.++ |.
T Consensus 8 ~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~~~a-----~~l~~A~~~gI-p~~~~~~~~-~~----------- 69 (209)
T 4ds3_A 8 NRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEA-----GGLAKAEAAGI-ATQVFKRKD-FA----------- 69 (209)
T ss_dssp EEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESCTTC-----THHHHHHHTTC-CEEECCGGG-SS-----------
T ss_pred ccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECCccc-----HHHHHHHHcCC-CEEEeCccc-cC-----------
Confidence 48999999984333222211122 236899888763221 13478999999 788876421 10
Q ss_pred ccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 174 AIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 174 a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
.|.-.-..+.+..++.++|.|.....+
T Consensus 70 -------------~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 70 -------------SKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp -------------SHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred -------------CHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 011111245566678899998876544
No 83
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=32.54 E-value=43 Score=27.54 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=22.6
Q ss_pred CEEEEEE-cCChHHHHHHHHHHHccCCeEE
Q 011097 96 NKVVLAY-SGGLDTSVIVPWLRENYGCEVV 124 (493)
Q Consensus 96 ~KVvVA~-SGG~DSsvll~~L~e~~G~eVi 124 (493)
++|+|-. .||..|..++.+|++. ||+|.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~-G~~v~ 118 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSL-GVNVY 118 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHT-TCCCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHc-CCceE
Confidence 5777776 5899999999999886 99654
No 84
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=32.40 E-value=14 Score=31.27 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHCCCCCCC
Q 011097 243 IQGREDAIEYAKKHNVPVPV 262 (493)
Q Consensus 243 l~sKeEi~~yA~~~GIp~~~ 262 (493)
|.|||+-++||+++|+++..
T Consensus 66 F~skE~AiayAek~G~~y~V 85 (108)
T 2lju_A 66 FTTRELAIAYAVAHKIDYTV 85 (108)
T ss_dssp ESSHHHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHHHHHcCCEEEE
Confidence 45899999999999998753
No 85
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=31.82 E-value=51 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEE
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVV 124 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eVi 124 (493)
+.++|++-..+|..|..++.+|++. ||+|.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~-G~~v~ 83 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQL-GLNIV 83 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTT-TCCEE
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc-CCCEE
Confidence 4467888888899999999999886 99654
No 86
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=31.70 E-value=2.7e+02 Score=26.48 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=48.3
Q ss_pred HHHHHHccCC--eEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHH
Q 011097 112 VPWLRENYGC--EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARP 189 (493)
Q Consensus 112 l~~L~e~~G~--eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~ 189 (493)
+..|+++ |- +|+++++-.. ..+.+.+.|..+|+++.+.++..+.|...+ .+ .
T Consensus 49 A~~Lke~-g~~~~V~av~~G~~----~a~~~lr~ala~GaD~vi~v~~d~~~~~~~----------------~~-----~ 102 (255)
T 1efv_B 49 AVRLKEK-KLVKEVIAVSCGPA----QCQETIRTALAMGADRGIHVEVPPAEAERL----------------GP-----L 102 (255)
T ss_dssp HHHHHHT-TSCSEEEEEEEEST----THHHHHHHHHHHTCSEEEEEECCHHHHTTC----------------CH-----H
T ss_pred HHHHHhc-CCCceEEEEEeCCh----hHHHHHHHHHhcCCCEEEEEecChhhcccC----------------CH-----H
Confidence 3445665 66 9999987532 234444455677998777787544551111 00 1
Q ss_pred HHHHHHHHHHHHcCCcEeeeCCCCCC
Q 011097 190 VIAKAMVDVAREVGADAVAHGCTGKG 215 (493)
Q Consensus 190 l~~~~l~~~A~e~Gad~IAtGhn~~g 215 (493)
...+.|.+++++.+++.|..|++..+
T Consensus 103 ~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 103 QVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 12346677777789999999998754
No 87
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.26 E-value=1.9e+02 Score=24.57 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=37.1
Q ss_pred CEEEEEEcCC----hHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcC
Q 011097 96 NKVVLAYSGG----LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDL 157 (493)
Q Consensus 96 ~KVvVA~SGG----~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl 157 (493)
.||+++.-|| .=-..+...|... ||+|+ |+|.. -..+.+.+.|.+.+. .+..++.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~-G~~Vi----~lG~~-~p~e~~v~~a~~~~~-d~v~lS~ 62 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVV----NIGVL-SPQELFIKAAIETKA-DAILVSS 62 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHT-TCEEE----EEEEE-ECHHHHHHHHHHHTC-SEEEEEE
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHC-CCEEE----ECCCC-CCHHHHHHHHHhcCC-CEEEEEe
Confidence 4899998887 2234555677776 99987 44542 335667777888888 6777655
No 88
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=30.91 E-value=14 Score=31.13 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHCCCCCCC
Q 011097 243 IQGREDAIEYAKKHNVPVPV 262 (493)
Q Consensus 243 l~sKeEi~~yA~~~GIp~~~ 262 (493)
|.|||+-++||+++|+++..
T Consensus 58 F~skE~AiayAek~G~~y~V 77 (106)
T 2jya_A 58 FETQEQAEAYAQRKGIEYRV 77 (106)
T ss_dssp ESSHHHHHHHHHHHTCEEEE
T ss_pred cCCHHHHHHHHHHcCCEEEE
Confidence 45899999999999999754
No 89
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=30.45 E-value=2.1e+02 Score=27.89 Aligned_cols=111 Identities=11% Similarity=0.038 Sum_probs=62.4
Q ss_pred cChHHHHHHHHhhhhhhccCccccCCCCCCCCEEEEEEcCChHHHHHHHHHHH----ccCCeEEEEEEecCCCcccHHHH
Q 011097 65 ACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRE----NYGCEVVCFTADVGQGIKELDGL 140 (493)
Q Consensus 65 lC~~~f~~~~~~~v~~~~~~~~~~~~l~~~~~KVvVA~SGG~DSsvll~~L~e----~~G~eViavtid~Gq~~ed~e~a 140 (493)
...+.|.+.++.-..+..- .++-.. ..+.+||+|..||. +|. +-.+|.. .+..+|.+|.-|.. + +
T Consensus 67 ~~~~~L~~~f~~la~~~~m-~~~l~~-~~~~~ri~vl~Sg~-g~~-l~~ll~~~~~g~l~~~i~~Visn~~----~---~ 135 (292)
T 3lou_A 67 LRVDALRREFEPIAERFRM-QWAIHD-VAARPKVLIMVSKL-EHC-LADLLFRWKMGELKMDIVGIVSNHP----D---F 135 (292)
T ss_dssp CCHHHHHHHHHHHHHHHTC-EEEEEE-TTSCCEEEEEECSC-CHH-HHHHHHHHHHTSSCCEEEEEEESSS----T---T
T ss_pred CCHHHHHHHHHHHHHhcCc-EEEeec-cCCCCEEEEEEcCC-CcC-HHHHHHHHHcCCCCcEEEEEEeCcH----H---H
Confidence 4456777777654322000 111111 12346999999998 453 3344432 13579988887643 1 3
Q ss_pred HHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCC
Q 011097 141 EEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTG 213 (493)
Q Consensus 141 ~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~ 213 (493)
+.+|++.|| |++.++.+.. +|.---..+.+..++.++|.|......
T Consensus 136 ~~~A~~~gI-p~~~~~~~~~--------------------------~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 136 APLAAQHGL-PFRHFPITAD--------------------------TKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp HHHHHHTTC-CEEECCCCSS--------------------------CHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCC-CEEEeCCCcC--------------------------CHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 456999999 7888765310 011001235566678899998886554
No 90
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=29.04 E-value=2.6e+02 Score=26.76 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=46.8
Q ss_pred HHHHHccCC--eEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHH
Q 011097 113 PWLRENYGC--EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPV 190 (493)
Q Consensus 113 ~~L~e~~G~--eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l 190 (493)
..|++++|- +|+++++ |. ...+.+.+.|..+|+++.+.++- +.|.. | .+ ..
T Consensus 47 ~~Lke~~g~~~~V~av~~--G~--~~~~~~lr~ala~GaD~vi~v~d-~~~~~----------------~-~~-----~~ 99 (264)
T 1o97_C 47 MKIKESSDTDVEVVVVSV--GP--DRVDESLRKCLAKGADRAVRVWD-DAAEG----------------S-DA-----IV 99 (264)
T ss_dssp HHHHHHCSSCCEEEEEEE--SC--GGGHHHHHHHHHTTCSEEEEECC-GGGTT----------------C-CH-----HH
T ss_pred HHHHHhcCCCceEEEEEe--Cc--hhHHHHHHHHHhcCCCEEEEEcC-ccccc----------------C-CH-----HH
Confidence 345555465 8999886 42 22344445567789987777763 23321 0 00 12
Q ss_pred HHHHHHHHHHHcCCcEeeeCCCCCC
Q 011097 191 IAKAMVDVAREVGADAVAHGCTGKG 215 (493)
Q Consensus 191 ~~~~l~~~A~e~Gad~IAtGhn~~g 215 (493)
..+.|..++++.+.+.|.+|++..+
T Consensus 100 ~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 100 VGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccC
Confidence 2356777788889999999998754
No 91
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=28.38 E-value=50 Score=27.24 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHc---cCCeEEEEEEecCC
Q 011097 95 LNKVVLAYSGGLDTSVIVPWLREN---YGCEVVCFTADVGQ 132 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~L~e~---~G~eViavtid~Gq 132 (493)
++||+++.++|.=||.++.-+++. .|+++..-+++.+.
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~ 43 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL 43 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH
Confidence 368999999999999887766432 37776655555554
No 92
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=27.33 E-value=55 Score=27.32 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.3
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCe-EEEEEEecCC
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCE-VVCFTADVGQ 132 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~e-Viavtid~Gq 132 (493)
.+.++|+|-..+|..|..++.+|++. ||+ |.. ++-|.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~-G~~~v~~--l~GG~ 117 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHA-GFTGVKD--IVGGY 117 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHH-HCCSEEE--EECCH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHc-CCCCeEE--eCCcH
Confidence 34567888888889999999999986 986 643 44443
No 93
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.96 E-value=67 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=21.4
Q ss_pred CEEEEEEcCChHHHHHHHHHHHc---cCCeEE
Q 011097 96 NKVVLAYSGGLDTSVIVPWLREN---YGCEVV 124 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~e~---~G~eVi 124 (493)
.||+++.++|.=||.++.-|++. .|+++.
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~ 36 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINAT 36 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEE
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeE
Confidence 57999999999999777666543 266543
No 94
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=26.89 E-value=74 Score=24.78 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=27.2
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ 132 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq 132 (493)
.+ ++|++-..+|.-|..++..|++. ||+ ...++-|.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~-G~~--v~~l~GG~ 87 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAE-GYE--AMSLEGGL 87 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHH-TCC--EEEETTGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHc-CCc--EEEEcccH
Confidence 45 67888888889999999999886 998 33445443
No 95
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.67 E-value=74 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCe
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCE 122 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~e 122 (493)
+.++|++-..+|..|..++.+|++. ||+
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~-G~~ 67 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEM-GYT 67 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHT-TCS
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHc-CCC
Confidence 4567888888899999999999986 986
No 96
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=26.31 E-value=75 Score=27.11 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCe-EEEEEEecCC
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCE-VVCFTADVGQ 132 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~e-Viavtid~Gq 132 (493)
+.++|+|-..+|..|..++..|++. ||+ |. .++-|.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~-G~~~v~--~l~GG~ 115 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA-GITPAY--NVLDGF 115 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT-TCCSEE--EETTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc-CCcceE--EEcCCh
Confidence 3467887777888999999899886 995 54 445454
No 97
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=26.20 E-value=1.5e+02 Score=29.06 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=46.4
Q ss_pred cCCeEEEEEEecCCCc-----ccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHHHHH
Q 011097 119 YGCEVVCFTADVGQGI-----KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAK 193 (493)
Q Consensus 119 ~G~eViavtid~Gq~~-----ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l~~~ 193 (493)
.|.+.+.++++.|.+. +++..+.+.|.+.|+ ++.+.+.. +..+ .. . +-...
T Consensus 137 ~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~Gl-pvIie~~~---G~~~-----------------~~--d-~e~i~ 192 (295)
T 3glc_A 137 LNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGM-PTMAVTGV---GKDM-----------------VR--D-QRYFS 192 (295)
T ss_dssp TTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTC-CEEEEECC------------------------CC--S-HHHHH
T ss_pred CCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCC-EEEEECCC---CCcc-----------------CC--C-HHHHH
Confidence 3999999999999642 456677888889999 67765532 1110 00 0 11112
Q ss_pred HHHHHHHHcCCcEeeeCCC
Q 011097 194 AMVDVAREVGADAVAHGCT 212 (493)
Q Consensus 194 ~l~~~A~e~Gad~IAtGhn 212 (493)
.+.++|.+.|||+|-|..+
T Consensus 193 ~aariA~elGAD~VKt~~t 211 (295)
T 3glc_A 193 LATRIAAEMGAQIIKTYYV 211 (295)
T ss_dssp HHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHhCCCEEEeCCC
Confidence 4678899999999999855
No 98
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=25.71 E-value=77 Score=28.73 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.6
Q ss_pred CEEEEEEcCChHHHHHHHHHH---HccCCeEEEEEEecCC
Q 011097 96 NKVVLAYSGGLDTSVIVPWLR---ENYGCEVVCFTADVGQ 132 (493)
Q Consensus 96 ~KVvVA~SGG~DSsvll~~L~---e~~G~eViavtid~Gq 132 (493)
+||+|++|||.-..-+..+++ +. |++|..+.-+-++
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~~-g~~V~vv~T~~A~ 44 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKSK-FDEVNVIASTNGR 44 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTTT-CSEEEEEECTGGG
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHHC-CCEEEEEECcCHH
Confidence 699999999987665555544 43 8998877654443
No 99
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=24.71 E-value=2.3e+02 Score=26.97 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHccCCeEEEEEEecCCCc-----ccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCccccCcccccccCcHHH
Q 011097 116 RENYGCEVVCFTADVGQGI-----KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPV 190 (493)
Q Consensus 116 ~e~~G~eViavtid~Gq~~-----ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~y~g~y~~~~~~~R~l 190 (493)
.+. |.+.+-+++++|... +++..+++.|...|+ ++.+.+.-+ +.++ . +. + + -..
T Consensus 102 i~~-Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~-~vIi~~~~~--G~~~-----~-----~~-~--s----~~~ 160 (263)
T 1w8s_A 102 VSL-GASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDL-PLVVESFPR--GGKV-----V-----NE-T--A----PEI 160 (263)
T ss_dssp HHT-TCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTC-CEEEEECCC--STTC-----C-----CT-T--C----HHH
T ss_pred HHC-CCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCC-eEEEEeeCC--CCcc-----c-----cC-C--C----HHH
Confidence 344 999999999988542 466778888888999 665543210 0000 0 00 0 0 111
Q ss_pred HHHHHHHHHHHcCCcEeeeCCC
Q 011097 191 IAKAMVDVAREVGADAVAHGCT 212 (493)
Q Consensus 191 ~~~~l~~~A~e~Gad~IAtGhn 212 (493)
...+.+.|.+.|+|+|-||.+
T Consensus 161 -i~~a~~~a~~~GAD~vkt~~~ 181 (263)
T 1w8s_A 161 -VAYAARIALELGADAMKIKYT 181 (263)
T ss_dssp -HHHHHHHHHHHTCSEEEEECC
T ss_pred -HHHHHHHHHHcCCCEEEEcCC
Confidence 123467889999999999953
No 100
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=24.44 E-value=56 Score=30.11 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCEEEEEEcCChHHHHHHHH---HHHccCCeEEEEEE
Q 011097 95 LNKVVLAYSGGLDTSVIVPW---LRENYGCEVVCFTA 128 (493)
Q Consensus 95 ~~KVvVA~SGG~DSsvll~~---L~e~~G~eViavti 128 (493)
++||+|++|||.-..-+..+ |++. |++|..+.-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T 43 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKSF-FKEIRVVMT 43 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTTT-SSEEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEc
Confidence 47999999999866544444 4443 888876653
No 101
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=24.37 E-value=87 Score=25.84 Aligned_cols=28 Identities=18% Similarity=0.029 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCChH--HHHHHHHHHHccCCe
Q 011097 94 KLNKVVLAYSGGLD--TSVIVPWLRENYGCE 122 (493)
Q Consensus 94 ~~~KVvVA~SGG~D--Ssvll~~L~e~~G~e 122 (493)
+.++|+|-..+|.. |..++.+|++. ||+
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~-G~~ 99 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSA-GFE 99 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHH-TCE
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc-CCe
Confidence 45678888888888 78888888886 998
No 102
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=23.91 E-value=1e+02 Score=26.25 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=24.9
Q ss_pred CCCCEEEEEEcCC--hHHHHHHHHHHHccCCeEEEEEEecC
Q 011097 93 GKLNKVVLAYSGG--LDTSVIVPWLRENYGCEVVCFTADVG 131 (493)
Q Consensus 93 ~~~~KVvVA~SGG--~DSsvll~~L~e~~G~eViavtid~G 131 (493)
.+.++|+|-..+| ..|..++.+|++. ||+|. .++-|
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~-G~~v~--~l~GG 107 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQL-GFRVK--ELIGG 107 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHT-TCEEE--EEESH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHC-CCeEE--EeCCc
Confidence 3446777666666 7899999899886 99743 44444
No 103
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=23.83 E-value=1.5e+02 Score=28.38 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=43.6
Q ss_pred CEEEEEEcCChH-----HHHHHHHHHHccCCeEEEEEE-ecCC-CcccHHHHHHHHHHcCCceEEEEcCc
Q 011097 96 NKVVLAYSGGLD-----TSVIVPWLRENYGCEVVCFTA-DVGQ-GIKELDGLEEKAKASGACQLVVKDLK 158 (493)
Q Consensus 96 ~KVvVA~SGG~D-----Ssvll~~L~e~~G~eViavti-d~Gq-~~ed~e~a~~~A~~LGI~~~~VvDl~ 158 (493)
.|+++.+|-|.| -..++..+++. |..|+.+-+ |.+. ...+.+.++++|+.-|- .++.++..
T Consensus 10 ~k~iillTDG~~~~g~~p~~aa~~a~~~-gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG-~yf~a~~~ 77 (242)
T 3rag_A 10 IRQILVITDGCSNIGPDPVEAARRAHRH-GIVVNVIGIVGRGDAGEQGYQEAHSIADAGGG-MCRIVQPA 77 (242)
T ss_dssp EEEEEEEESSCCCSSSCHHHHHHHHHHT-TCEEEEEEECCSSSCTTCCCHHHHHHHHHTTS-CEEEECGG
T ss_pred ccEEEEEccCCCCCCCCHHHHHHHHHHC-CCEEEEEEecCCccccchhHHHHHHHHHhcCC-eEEEeeHH
Confidence 478999988874 46777777776 998887777 4321 12345679999999987 67777653
No 104
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=22.51 E-value=96 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=28.3
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCC
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQ 132 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq 132 (493)
+.++|+|-..+|..|..++.+|++. ||+. ..++-|.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~-G~~~--~~l~GG~ 90 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHEL-GYTP--YYLEGNV 90 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHT-TCCC--EEEESCG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHC-CCCE--EEecCCH
Confidence 3467888888899999999999886 9976 5666665
No 105
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=22.34 E-value=1.4e+02 Score=25.46 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=59.1
Q ss_pred EEEEEcC--ChHHHHHHHHHHHccCCeEEEEEEec-C-----CC-cccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhh
Q 011097 98 VVLAYSG--GLDTSVIVPWLRENYGCEVVCFTADV-G-----QG-IKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFP 168 (493)
Q Consensus 98 VvVA~SG--G~DSsvll~~L~e~~G~eViavtid~-G-----q~-~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~ 168 (493)
++|+.|. |.-+..++.+|.+. ||+|+.++-.. + .+ ..+++++.+ .+ ++.++-+..+...+++..
T Consensus 17 aVvGas~~~g~~G~~~~~~l~~~-G~~v~~vnp~~~~~~i~G~~~~~sl~el~~-----~v-Dlavi~vp~~~~~~v~~~ 89 (140)
T 1iuk_A 17 AVLGAHKDPSRPAHYVPRYLREQ-GYRVLPVNPRFQGEELFGEEAVASLLDLKE-----PV-DILDVFRPPSALMDHLPE 89 (140)
T ss_dssp EEETCCSSTTSHHHHHHHHHHHT-TCEEEEECGGGTTSEETTEECBSSGGGCCS-----CC-SEEEECSCHHHHTTTHHH
T ss_pred EEECCCCCCCChHHHHHHHHHHC-CCEEEEeCCCcccCcCCCEEecCCHHHCCC-----CC-CEEEEEeCHHHHHHHHHH
Confidence 4556664 56667777888886 99988776542 2 11 122332221 45 577777777777777777
Q ss_pred HHHhCccccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCC
Q 011097 169 CLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGC 211 (493)
Q Consensus 169 ~i~~~a~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGh 211 (493)
+++.+.. . .++..... -..+.+.|++.|..+|--.|
T Consensus 90 ~~~~gi~--~-i~~~~g~~----~~~~~~~a~~~Gir~vgpnc 125 (140)
T 1iuk_A 90 VLALRPG--L-VWLQSGIR----HPEFEKALKEAGIPVVADRC 125 (140)
T ss_dssp HHHHCCS--C-EEECTTCC----CHHHHHHHHHTTCCEEESCC
T ss_pred HHHcCCC--E-EEEcCCcC----HHHHHHHHHHcCCEEEcCCc
Confidence 7765431 1 22222111 24678889999998884333
No 106
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=20.50 E-value=98 Score=25.86 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=24.0
Q ss_pred CCCCEEEEEEcCChHHHHHHHHHHHccCCe
Q 011097 93 GKLNKVVLAYSGGLDTSVIVPWLRENYGCE 122 (493)
Q Consensus 93 ~~~~KVvVA~SGG~DSsvll~~L~e~~G~e 122 (493)
.+.++|++-..+|..|..++.+|++. ||+
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~-G~~ 117 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSH-GYS 117 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTT-TCC
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHc-CCC
Confidence 34578888888899999999999886 985
No 107
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=20.45 E-value=1.1e+02 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHccCCe-EE
Q 011097 94 KLNKVVLAYSGGLDTSVIVPWLRENYGCE-VV 124 (493)
Q Consensus 94 ~~~KVvVA~SGG~DSsvll~~L~e~~G~e-Vi 124 (493)
+.++|+|-..+|..|..++.+|++. ||+ |.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~-G~~~v~ 87 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQ-GYDVVY 87 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHH-TCSSEE
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHc-CCceEE
Confidence 3466777777788999999999987 985 54
No 108
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=20.03 E-value=1.7e+02 Score=28.89 Aligned_cols=56 Identities=23% Similarity=0.184 Sum_probs=36.0
Q ss_pred CEEEEEEcCChHHHH-HHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEc
Q 011097 96 NKVVLAYSGGLDTSV-IVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKD 156 (493)
Q Consensus 96 ~KVvVA~SGG~DSsv-ll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvD 156 (493)
.||++. |+-+=.+ ++..|.+. +++|++|...-..+.. -..+++.|++.|| |.+..+
T Consensus 23 mrIvf~--G~~~fa~~~L~~L~~~-~~~i~~Vvt~pd~~~~-~~~v~~~A~~~gI-pv~~~~ 79 (329)
T 2bw0_A 23 MKIAVI--GQSLFGQEVYCHLRKE-GHEVVGVFTVPDKDGK-ADPLGLEAEKDGV-PVFKYS 79 (329)
T ss_dssp CEEEEE--CCHHHHHHHHHHHHHT-TCEEEEEEECCCCSSC-CCHHHHHHHHHTC-CEEECS
T ss_pred CEEEEE--cCcHHHHHHHHHHHHC-CCeEEEEEeCCCcCCC-CCHHHHHHHHcCC-CEEecC
Confidence 588877 7765443 56677776 8999988762111111 1246688999999 676654
Done!