BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011098
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 158 SADDIGWLQRDLSMPPVEDGTERFLEILDNIRHGLHKLPNSMVYLLIPGLFSNHG 212
S +DI WL+R S+P V G R + + ++HGL+ + L SNHG
Sbjct: 235 SWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGI-----------LVSNHG 278
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 158 SADDIGWLQRDLSMPPVEDGTERFLEILDNIRHGLHKLPNSMVYLLIPGLFSNHG 212
S +DI WL+R S+P V G R + + ++HGL+ + L SNHG
Sbjct: 218 SWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGI-----------LVSNHG 261
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 158 SADDIGWLQRDLSMPPVEDGTERFLEILDNIRHGLHKLPNSMVYLLIPGLFSNHG 212
S +DI WL+R S+P V G R + + ++HGL+ + L SNHG
Sbjct: 240 SWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGI-----------LVSNHG 283
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 261 KRVLLLGHSKGGVDAAAALSLYWPDLKDKVAGLALAQSPYG 301
+ + L+GHS+GGV A+ L+ +PDL KV LA A + G
Sbjct: 119 RNIYLVGHSQGGV-VASMLAGLYPDLIKKVVLLAPAATLKG 158
>pdb|3NO6|A Chain A, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|B Chain B, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|C Chain C, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|D Chain D, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
Length = 248
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 9 RESSTPLVNDGVRNDGFIPQLLTS-------LPVLDGAASYLAQTTSL 49
RE+S P+++D + NDGFI LL L ASYL + T++
Sbjct: 27 REASRPIIDD-IYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNI 73
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 261 KRVLLLGHSKGGVDAAAALSLYWPDLKDKVAGLALAQSPYG 301
+ + L+GH++GGV A+ L+ +PDL KV LA A + G
Sbjct: 119 RNIYLVGHAQGGV-VASMLAGLYPDLIKKVVLLAPAATLKG 158
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 261 KRVLLLGHSKGGVDAAAALSLYWPDLKDKVAGLALAQSPYG 301
+ + L+GH++GGV A+ L+ +PDL KV LA A + G
Sbjct: 119 RNIYLVGHAQGGV-VASMLAGLYPDLIKKVVLLAPAATLKG 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,632,046
Number of Sequences: 62578
Number of extensions: 471366
Number of successful extensions: 1007
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 7
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)