BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011098
(493 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26876|LIP_PSEAE Lactonizing lipase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=lip PE=1 SV=2
Length = 311
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 40/250 (16%)
Query: 215 YFVNTKMSFSKQGLACHIAKIHSEASVEKNAKEIKEYIEEIY-WGSKKRVLLLGHSKGG- 272
Y+ + + G ++ ++ + E +++ + +EEI + +V L+GHS GG
Sbjct: 53 YWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGGP 112
Query: 273 -VDAAAALSLYWPDLKDKVAGLALAQSPYGGSPIATDILRE---GQLGDYV--NLRKLME 326
+ AA+ PDL +A +P+ GS A D LR+ G G+ V L +
Sbjct: 113 TIRYVAAVR---PDL---IASATSVGAPHKGSDTA-DFLRQIPPGSAGEAVLSGLVNSLG 165
Query: 327 ILICKVIKG------DLQALEDLTYERRMDFLRKHQLPRELPVVSLHTEAGITSAVLATL 380
LI + G L +LE L E F K+ P+ +P TSA
Sbjct: 166 ALISFLSSGSTGTQNSLGSLESLNSEGAARFNAKY--PQGIP----------TSACGEGA 213
Query: 381 SHVAHAELPSLSADEPSKLPVVMPLGAAMAACAQLLQLRYGEKSDGLV-TCRDAVVPGSI 439
V S S P + P A + A + L + G +DGLV TC + +
Sbjct: 214 YKVNGVSYYSWSGSSPLT-NFLDPSDAFLGASS--LTFKNGTANDGLVGTCSSHL---GM 267
Query: 440 VVRPKRKLDH 449
V+R +++H
Sbjct: 268 VIRDNYRMNH 277
>sp|P26877|LIP_PSEU0 Lactonizing lipase OS=Pseudomonas sp. (strain 109) GN=lipL PE=1
SV=1
Length = 311
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 40/250 (16%)
Query: 215 YFVNTKMSFSKQGLACHIAKIHSEASVEKNAKEIKEYIEEIY-WGSKKRVLLLGHSKGG- 272
Y+ + + G ++ ++ + E +++ + +EEI + +V L+GHS GG
Sbjct: 53 YWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGGP 112
Query: 273 -VDAAAALSLYWPDLKDKVAGLALAQSPYGGSPIATDILRE---GQLGDYV--NLRKLME 326
+ AA+ PDL + +P+ GS A D LR+ G G+ V L +
Sbjct: 113 TIRYVAAVR---PDLMPSATSVG---APHKGSDTA-DFLRQIPPGSAGEAVLSGLVNSLG 165
Query: 327 ILICKVIKG------DLQALEDLTYERRMDFLRKHQLPRELPVVSLHTEAGITSAVLATL 380
LI + G L +LE L E F K+ P+ +P TSA
Sbjct: 166 ALISFLSSGSAGTQNSLGSLESLNSEGAARFNAKY--PQGIP----------TSACGEGA 213
Query: 381 SHVAHAELPSLSADEPSKLPVVMPLGAAMAACAQLLQLRYGEKSDGLV-TCRDAVVPGSI 439
V S S P + P A + A + L + G +DGLV TC + +
Sbjct: 214 YKVNGVSYYSWSGSSPLT-NFLDPSDAFLGASS--LTFKNGTANDGLVGTCSSHL---GM 267
Query: 440 VVRPKRKLDH 449
V+R +++H
Sbjct: 268 VIRDNYRMNH 277
>sp|P75344|DNAK_MYCPN Chaperone protein DnaK OS=Mycoplasma pneumoniae (strain ATCC 29342
/ M129) GN=dnaK PE=3 SV=1
Length = 595
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%)
Query: 148 IDRARRTVRGSADDIGWLQRDLSMPPVEDGTERFLEILDNIRHGLHKLPNSMVYLLIPGL 207
ID++ R ++ D+G D+S+ + +GT L + R G N ++ ++ +
Sbjct: 164 IDKSNREMKVLVYDLGGGTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIEFILAHI 223
Query: 208 FSNHGPLYFVNTKMSFSKQGLACHIAKIHSEASVE 242
H L N KM+ + A AKI A +E
Sbjct: 224 AQEHNGLNLSNDKMAMQRLKEAAERAKIELSAQLE 258
>sp|A4IPA2|ARAB_GEOTN Ribulokinase OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=araB PE=3 SV=1
Length = 564
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 362 PVVSLHTEAGITSAVLATLSHV------------AHAELPSLSADEPSKLPVVMPLGAAM 409
P+V L T AG+ + +A + + AHA +P + EP KL VM +G ++
Sbjct: 239 PIVPLGTRAGVLTKEMAAMMGLLPGTAVAVGNVDAHAAVPGVGVVEPGKL--VMAMGTSI 296
Query: 410 AACAQLL--QLRYGEKSDGLVTCRDAVVPG 437
C LL + +Y E G+V D ++PG
Sbjct: 297 --CHMLLGTEEKYVEGMCGVV--EDGIIPG 322
>sp|Q9S468|ARAB_GEOSE Ribulokinase OS=Geobacillus stearothermophilus GN=araB PE=3 SV=1
Length = 564
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 362 PVVSLHTEAGITSAVLATLSHV------------AHAELPSLSADEPSKLPVVMPLGAAM 409
P+V L T AG+ + +A + + AHA +P + EP KL VM +G ++
Sbjct: 239 PIVPLGTRAGVLTNEMAAMMGLLPGTAVAVGNVDAHAAVPGVGVVEPGKL--VMAMGTSI 296
Query: 410 AACAQLL--QLRYGEKSDGLVTCRDAVVPG 437
C LL + +Y E G+V D ++PG
Sbjct: 297 --CHMLLGTEEKYVEGMCGVV--EDGIIPG 322
>sp|Q5KYP6|ARAB_GEOKA Ribulokinase OS=Geobacillus kaustophilus (strain HTA426) GN=araB
PE=3 SV=1
Length = 564
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 362 PVVSLHTEAGITSAVLATLSHV------------AHAELPSLSADEPSKLPVVMPLGAAM 409
P+V L T AG+ + +A + + AHA +P + EP KL VM +G ++
Sbjct: 239 PIVPLGTRAGVLTNEMAAMMGLLPGTAVAVGNVDAHAAVPGVGVVEPGKL--VMAMGTSI 296
Query: 410 AACAQLL--QLRYGEKSDGLVTCRDAVVPG 437
C LL + +Y E G+V D ++PG
Sbjct: 297 --CHMLLGTEEKYVEGMCGVV--EDGIIPG 322
>sp|Q8K9Y2|NUOG_BUCAP NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=nuoG PE=3 SV=1
Length = 910
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 404 PLGAAMAACAQLLQLRYGEKSDG----LVTCRDAVVPGSIVVRPKRKLDHAWMVYSSLND 459
P+ ++ AC Q +Y D +++C V+ G+I+ S+ND
Sbjct: 37 PILGSLGACRQCAVTQYNSSLDNQGKLIMSCMTPVIDGTII---------------SIND 81
Query: 460 DTSEADASQVCEALLT 475
DTS+ S + E LLT
Sbjct: 82 DTSKKFRSNIVELLLT 97
>sp|Q9Y4D8|HECD4_HUMAN Probable E3 ubiquitin-protein ligase HECTD4 OS=Homo sapiens GN=HECTD4
PE=1 SV=5
Length = 3996
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 146 GLIDRARRTVRGSADDIGWLQRDLSMPPVEDGTERFLEI-LDNIRHGL 192
G++D AR+TV ++ G + RDL +P +ED + + +D +R GL
Sbjct: 2289 GMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGL 2336
>sp|P15493|LIP_VIBCH Lipase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor
Inaba N16961) GN=lipA PE=3 SV=2
Length = 312
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 202 LLIPGLFSNH---GPLYFVNTKMSFSKQGLACHIAKIHSEASVEKNAKEIKEYIEEIY-W 257
+L+ GLF G YF S ++ G ++A++ + S E+ +++ +E +
Sbjct: 39 VLVHGLFGFDTLAGMDYFHGIPQSLTRDGAQVYVAQVSATNSSERRGEQLLAQVESLLAV 98
Query: 258 GSKKRVLLLGHSKGG 272
K+V L+GHS GG
Sbjct: 99 TGAKKVNLIGHSHGG 113
>sp|Q9FW03|MES11_ARATH Putative methylesterase 11, chloroplastic OS=Arabidopsis thaliana
GN=MES11 PE=2 SV=1
Length = 390
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 227 GLACHIAKIHSEASVEKNAKEIKEYIEEIYWGSKKRVLLLGHSKGGVDAAAALSLYWPDL 286
G + I+ AS+ + K + + +E++ G K V+L+GH GG + A+ L+ P
Sbjct: 173 GCGINSININGIASLSQYVKPLTDILEKLPIGEK--VILVGHDFGGACISYAMELF-PSK 229
Query: 287 KDKVAGLALAQSPYGGSPI--------ATDILREGQLGDYVN 320
K LA A G S + D++R+ Q+ Y N
Sbjct: 230 ISKAVFLAAAMLTNGQSTLDMFSLKAGQNDLMRKAQIFIYTN 271
>sp|Q7NAU6|DNAK_MYCGA Chaperone protein DnaK OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=dnaK PE=3 SV=2
Length = 593
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 138 PNGISLFKGLIDRARRTVRGSADDIGWLQRDLSMPPVEDGTERFLEILDNIRHGLHKLPN 197
P +L G ID+ R ++ D+G D+S+ + DGT + + R G N
Sbjct: 154 PTAAALAYG-IDKGHREMKVLVYDLGGGTFDVSLLDIADGTFEVMATAGDNRLGGDDWDN 212
Query: 198 SMVYLLIPGLFSNHGPLYFVNTKMSFSKQGLACHIAKIHSEASVE 242
++ +I + +H L + KM+ + A AKI A +E
Sbjct: 213 KIIEWIIAEIKKDHPSLDLKSDKMAMQRLKEAAERAKIELSAQLE 257
>sp|P53760|LCAT_CHICK Phosphatidylcholine-sterol acyltransferase (Fragment) OS=Gallus
gallus GN=LCAT PE=2 SV=1
Length = 413
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 246 KEIKEYIEEIYWGSKKRVLLLGHSKGGVDAAAALSLYWPDLKDK-VAGLALAQSPYGGSP 304
+ +K IEE++ ++RV L+GHS G ++ L KD+ + G +P+GGS
Sbjct: 180 QNLKALIEEMHDEYQQRVFLIGHSMGNLNVLYFLLQQKQAWKDQYIGGFISLGAPWGGSV 239
Query: 305 IATDILREG 313
+L G
Sbjct: 240 KPLRVLASG 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,342,485
Number of Sequences: 539616
Number of extensions: 7502018
Number of successful extensions: 22304
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 22221
Number of HSP's gapped (non-prelim): 121
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)