BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011099
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 338 bits (867), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 192/480 (40%), Positives = 283/480 (58%), Gaps = 23/480 (4%)
Query: 2 EIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATI-FVVANDTSSEQLSKLVNSPDY 60
E + PHVA++ SPGMGHLIP++E KRLV + H T+ FV+A + + + V
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLV--HLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 61 DILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRSTISAM---KYRPTALIVDLF 117
+ V LP +D++ + + + ++I++ + S P LR + PTAL+VDLF
Sbjct: 61 SSISSVFLPPVDLTDL-SSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLF 119
Query: 118 GTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVNQKKPLKIPGCSAVR 177
GT+A VA EF + Y+F + A ++ ++ P LD+ V E +PL +PGC V
Sbjct: 120 GTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETV-SCEFRELTEPLMLPGCVPVA 178
Query: 178 FEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKA 237
+D L+ D Y L +A+GILVNT+ +LE + AL++ + K
Sbjct: 179 GKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGL----DKP 234
Query: 238 PVYPVGPLAR-SVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLE 296
PVYPVGPL + + L WLD QP SV+YVSFGSGGTL+ +Q ELA GL
Sbjct: 235 PVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLA 294
Query: 297 QSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMW 356
S+QRF+WV+R P A S ++ +LP GFL RT+ G V+P W
Sbjct: 295 DSEQRFLWVIRSPSG--------IANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFW 346
Query: 357 APQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRS 416
APQ ++LAHPS GGFLTHCGWNST+ES+V+G+P+I WPLYAEQKMNA +L+E++R A+R
Sbjct: 347 APQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRP 406
Query: 417 KEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIA 476
+ + +V R E+ +V+ ++ ++G +RN+++ELK +A + L + G+S +LS +A
Sbjct: 407 RA--GDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVA 464
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 143/509 (28%), Positives = 235/509 (46%), Gaps = 73/509 (14%)
Query: 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYD-I 62
RKPHV ++ P GH+ P+ +L K L ++ H I V + + ++L K +D
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFH---ITFVNTEYNHKRLLKSRGPKAFDGF 63
Query: 63 LDIVL------LPCIDISGIVCTDA-SLVTQIAVMMHESIPALRSTISAMKYRP--TALI 113
D L ++ G V D +L + + L + ++ P T L+
Sbjct: 64 TDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLV 123
Query: 114 VDLFGTEAMAVADEFEMLKYMFIASNAW----------FVAVTIYAPALDKKVLQEEHVN 163
D + + A+EFE+ ++ +S+A FV I P D+ L +
Sbjct: 124 SDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI-IPFKDESYLTNGCLE 182
Query: 164 QKKPLKIPGCSAVRFEDTLEAF--LDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKT 221
K IPG R +D ++ +P M + F++V ++K IL+NT+ +LES
Sbjct: 183 TKVDW-IPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
Query: 222 LAALRDFNMLRRVAKAPVYPVGPLARSVASSPV------------SGSHVVLDWLDKQPH 269
+ AL +YP+GPL + +P LDWL+ +
Sbjct: 242 INALSS-------TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEP 294
Query: 270 ESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTA 329
SV+YV+FGS ++ +Q +E AWGL K+ F+W++RP L G + ++
Sbjct: 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDL---------VIGGSVIFSS 345
Query: 330 EGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVP 389
E F D GL+ W PQ ++L HPS+GGFLTHCGWNST ESI GVP
Sbjct: 346 E-----------FTNEIADRGLIAS-WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVP 393
Query: 390 MIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRN 449
M+ WP +A+Q + + E + + E+ + V+R E+ ++ ++A +G ++
Sbjct: 394 MLCWPFFADQPTDCRFICNEWEIGM---EIDTN---VKREELAKLINEVIAGDKGKKMKQ 447
Query: 450 RVEELKHSAQKALINGGSSYNSLSKIAHE 478
+ ELK A++ GG SY +L+K+ +
Sbjct: 448 KAMELKKKAEENTRPGGCSYMNLNKVIKD 476
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/500 (28%), Positives = 243/500 (48%), Gaps = 64/500 (12%)
Query: 4 RKPHVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVAND----TSSEQLSKLVNSP 58
+ + + +PG+GHL LE K L + N + T+F + S S L + P
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 59 DYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRSTI-SAMKYRPTALIVDLF 117
++D LP ++ S I + IP +++TI + + + L++D F
Sbjct: 68 QIQLID---LPEVEPPPQELL-KSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF 123
Query: 118 GTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVNQKKPLKIPGCSAVR 177
+ V +EF + Y+F+ SN F+++ + + + ++ + L IPG S
Sbjct: 124 CVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV 183
Query: 178 FEDTL-EAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAK 236
+ L +A + G Y + ++ GI+VNT+ DLE ++ AL D + ++
Sbjct: 184 PSNVLPDACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD--EKIP- 239
Query: 237 APVYPVGPLARSVASSP-----VSGSHVVLDWLDKQPHESVIYVSFGSGG-TLSSKQTME 290
P+Y VGPL + P + ++L WLD+QP +SV+++ FGS G + Q E
Sbjct: 240 -PIYAVGPLL-DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIRE 297
Query: 291 LAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFL--IRTRD 348
+A GL+ S RF+W N+AE + PEGFL +
Sbjct: 298 IALGLKHSGVRFLWS---------------------NSAEKKV----FPEGFLEWMELEG 332
Query: 349 VGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTE 408
G++ WAPQ E+LAH ++GGF++HCGWNS +ES+ GVP++ WP+YAEQ++NA L +
Sbjct: 333 KGMICG-WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391
Query: 409 E------LRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKAL 462
E LRV R +E+G ++M + + K +V+E+K ++ A+
Sbjct: 392 EWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHK-------KVQEMKEMSRNAV 444
Query: 463 INGGSSYNSLSKIAHECENS 482
++GGSS S+ K+ + S
Sbjct: 445 VDGGSSLISVGKLIDDITGS 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 143/493 (29%), Positives = 241/493 (48%), Gaps = 64/493 (12%)
Query: 4 RKPHVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVAND----TSSEQLSKLVNSP 58
+ + + +PG+GHL LE K L + N + T+F + S S L + P
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 59 DYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRSTI-SAMKYRPTALIVDLF 117
++D LP ++ S I + IP +++TI + + + L++D F
Sbjct: 68 QIQLID---LPEVEPPPQELL-KSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFF 123
Query: 118 GTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVNQKKPLKIPGCSAVR 177
+ V +EF + Y+F+ SN F+++ + + + ++ + L IPG S
Sbjct: 124 CVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV 183
Query: 178 FEDTL-EAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAK 236
+ L +A + G Y + ++ GI+VNT+ DLE ++ AL D + ++
Sbjct: 184 PSNVLPDACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD--EKIP- 239
Query: 237 APVYPVGPLARSVASSP-----VSGSHVVLDWLDKQPHESVIYVSFGSGG-TLSSKQTME 290
P+Y VGPL + P + ++L WLD+QP +SV+++ FGS G + Q E
Sbjct: 240 -PIYAVGPLL-DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIRE 297
Query: 291 LAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFL--IRTRD 348
+A GL+ S RF+W N+AE + PEGFL +
Sbjct: 298 IALGLKHSGVRFLWS---------------------NSAEKKV----FPEGFLEWMELEG 332
Query: 349 VGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTE 408
G++ WAPQ E+LAH ++GGF++HCGWNS +ES+ GVP++ WP+YAEQ++NA L +
Sbjct: 333 KGMICG-WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391
Query: 409 E------LRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKAL 462
E LRV R +E+G ++M + + K +V+E+K ++ A+
Sbjct: 392 EWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHK-------KVQEMKEMSRNAV 444
Query: 463 INGGSSYNSLSKI 475
++GGSS S+ K+
Sbjct: 445 VDGGSSLISVGKL 457
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 217/481 (45%), Gaps = 57/481 (11%)
Query: 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQL-----SKLVNSPD 59
PHVA+LA P H P+L + +RL H F + +++ + N
Sbjct: 7 NPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKS 66
Query: 60 YDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRSTISAMKYRP-TALIVDLFG 118
YDI D V + +G D L T+ A ES A RP + L+ D F
Sbjct: 67 YDISDGVPEGYV-FAGRPQEDIELFTRAA---PESFRQGMVMAVAETGRPVSCLVADAFI 122
Query: 119 TEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVNQKKPLK--IPGCSAV 176
A +A E + F + ++ +Y + +K+ ++ L IPG S V
Sbjct: 123 WFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKV 182
Query: 177 RFEDTLEAFLDPYGPMYDGFLQV----GMDMSKADGILVNTWEDLESKTLAALRDFNMLR 232
RF D E + +G + F ++ G + KA + +N++E+L+ L+
Sbjct: 183 RFRDLQEGIV--FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLK------ 234
Query: 233 RVAKAPVY-PVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMEL 291
+K Y +GP V + L WL ++ SV+Y+SFG+ T + + L
Sbjct: 235 --SKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVAL 292
Query: 292 AWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGL 351
+ LE S+ FIW +R D +LPEGFL +TR G+
Sbjct: 293 SEALEASRVPFIWSLR--------DKARV----------------HLPEGFLEKTRGYGM 328
Query: 352 VVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELR 411
VVP WAPQ E+LAH +VG F+THCGWNS ES+ GVP+I P + +Q++N M+ + L
Sbjct: 329 VVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLE 387
Query: 412 VAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNS 471
+ +R E V + + +I+++++G +R + L+ +A +A+ GSS +
Sbjct: 388 IGVR-----IEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTEN 442
Query: 472 L 472
Sbjct: 443 F 443
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/474 (26%), Positives = 204/474 (43%), Gaps = 59/474 (12%)
Query: 7 HVALLASPGMGHLIPVLELGKRLVIQN---NHHATIFVVANDTSSEQLSKLV-NSPDYDI 62
HVA+LA P H P+L L K++ + NDT + ++ + N Y++
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV 74
Query: 63 LDIVLLPCIDISGIVCTD---ASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119
D LP G V + + I M + ++ T L+ D F
Sbjct: 75 HD--GLP----KGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFW 128
Query: 120 EAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVNQKKPLKIPGCSAVRFE 179
+A+E + + +Y + +K +E + K +PG ++
Sbjct: 129 FGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKAS 188
Query: 180 DTLEAFLD----PYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRD-FNMLRRV 234
D E + P+ M ++G+++ +A+ + +N++ + L F +L V
Sbjct: 189 DLPEGVIKDIDVPFATMLH---KMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNV 245
Query: 235 AKAPVYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWG 294
GP + VS H L+WLD+ + SV+Y+SFGS T + LA
Sbjct: 246 --------GPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAES 297
Query: 295 LEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVP 354
LE+ FIW R LP+GFL RT+ G +V
Sbjct: 298 LEECGFPFIWSFR------------------------GDPKEKLPKGFLERTKTKGKIV- 332
Query: 355 MWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAI 414
WAPQ EIL H SVG FLTH GWNS +E IV GVPMI P + +Q +N T+LTE ++
Sbjct: 333 AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLN-TILTE----SV 387
Query: 415 RSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSS 468
V + V+ + I+ + ++ ++G +R ++ +LK SA KA+ G+S
Sbjct: 388 LEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTS 441
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 313 DVFDSYLTAGSGALNTAEGALDYHY-LPEGFLIRTRDVGLVVP-----MWAPQPEILAHP 366
D D Y T L+ +G LD+H L G + D+G V P W PQ +IL
Sbjct: 268 DHLDFYRTC----LSAVDG-LDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTKA 322
Query: 367 SVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTE 408
S F+TH G STME++ N VPM+ P AEQ MNA + E
Sbjct: 323 SA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 356 WAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMN 402
W PQ ++L HP F+TH G N E+I +G+P + PL+A+Q N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 356 WAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVA-- 413
W PQ IL + F+TH G + E + PMI P +Q NA ML + L VA
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGVARK 346
Query: 414 IRSKEVPSE------KSVVERGEIEMMVRRIVAEKQGHAIRNRVEEL 454
+ ++E ++ ++V+ E+ +RRI AE R +L
Sbjct: 347 LATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADL 393
>pdb|1S72|K Chain K, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|K Chain K, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|K Chain K, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|K Chain K, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|K Chain K, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|K Chain K, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|K Chain K, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|K Chain K, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|K Chain K, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|K Chain K, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|K Chain K, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|K Chain K, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|K Chain K, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|K Chain K, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|K Chain K, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|K Chain K, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|K Chain K, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|K Chain K, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|K Chain K, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|K Chain K, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|K Chain K, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|K Chain K, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|K Chain K, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|2QEX|K Chain K, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
Length = 132
Score = 35.0 bits (79), Expect = 0.097, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 143 VAVTIYAPALDKKVLQEEHVNQKKPLKIPGCSAVRFEDTLEAFLD 187
V+VT P + ++VL+ V Q+KP++ P + V+FED +D
Sbjct: 55 VSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVD 99
>pdb|1FFK|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|J Chain J, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|J Chain J, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|L Chain L, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|L Chain L, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|L Chain L, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|L Chain L, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|L Chain L, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|L Chain L, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|L Chain L, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|L Chain L, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|L Chain L, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|L Chain L, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|L Chain L, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|L Chain L, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|L Chain L, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|J Chain J, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|J Chain J, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|J Chain J, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CC2|K Chain K, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|K Chain K, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|K Chain K, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|K Chain K, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|J Chain J, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|K Chain K, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|K Chain K, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CXC|J Chain J, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3G4S|K Chain K, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|K Chain K, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|K Chain K, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3I55|K Chain K, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|K Chain K, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|K Chain K, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
pdb|3OW2|J Chain J, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 132
Score = 35.0 bits (79), Expect = 0.097, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 143 VAVTIYAPALDKKVLQEEHVNQKKPLKIPGCSAVRFEDTLEAFLD 187
V+VT P + ++VL+ V Q+KP++ P + V+FED +D
Sbjct: 55 VSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVD 99
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIV 66
H+ L G + +EL +L+ + H + F+ AN ++ ++LVN Y++ +
Sbjct: 291 HIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVC 350
Query: 67 LLPCIDISGIVCTDASLV 84
L P + G +AS +
Sbjct: 351 LQPIRGVEGSDYINASFL 368
>pdb|4EDP|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of An Abc
Transporter From Clostridium Perfringens Atcc 13124
pdb|4EDP|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of An Abc
Transporter From Clostridium Perfringens Atcc 13124
Length = 351
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 169 KIPGCSAV--RFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDL 217
KIP S + + + T+EA YGP Y +G+ + + GI +N+WEDL
Sbjct: 113 KIPNASEMNEKAKSTVEA---GYGPAYT-LNSIGIVVDPSAGIEINSWEDL 159
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 329 AEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAH----PSVGGF 371
A G + + G + RDV L P+WA PE AH P++GGF
Sbjct: 581 ATGTYNLQEIVPGSVWMERDVYLQGPIWAKIPETGAHFHPSPAMGGF 627
>pdb|2WB7|A Chain A, Pt26-6p
pdb|2WB7|B Chain B, Pt26-6p
Length = 526
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 329 AEGALDYHYLPEGFLIRTRDVGLVVPMW-APQPEI 362
A G LDYH L + RD G+ +P+W A +P I
Sbjct: 347 APGTLDYHALGLVYAYVERDDGVKIPIWLAAEPXI 381
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
Length = 398
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 1 MEIRKPHVALLASPGMGHLIPVLEL 25
+E R V ++SPG+GHL P+++L
Sbjct: 16 IEGRHXRVLFVSSPGIGHLFPLIQL 40
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 374 HCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEEL-RVAIRSKEVPSEKS--VVERGE 430
HCGW M I G I P E+ + + ++L +V +R +E K+ +V G
Sbjct: 406 HCGWLGLMSGIATGADYIFIP---ERPPSESNWKDDLKKVCLRHREKGRRKTTVIVAEGA 462
Query: 431 IEMMVRRIVAEK 442
I+ + I +E+
Sbjct: 463 IDDQLNPITSEE 474
>pdb|1Q2B|A Chain A, Cellobiohydrolase Cel7a With Disulphide Bridge Added
Across Exo-Loop By Mutations D241c And D249c
Length = 434
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC 70
Q N A ++++A+DT+ ++ + L N +D+ D+ LPC
Sbjct: 101 QKNVGARLYLMASDTTYQEFTLLGNEFSFDV-DVSQLPC 138
>pdb|1CEL|A Chain A, The Three-Dimensional Crystal Structure Of The Catalytic
Core Of Cellobiohydrolase I From Trichoderma Reesei
pdb|1CEL|B Chain B, The Three-Dimensional Crystal Structure Of The Catalytic
Core Of Cellobiohydrolase I From Trichoderma Reesei
pdb|1DY4|A Chain A, Cbh1 In Complex With S-Propranolol
pdb|2V3I|A Chain A, Hypocrea Jecorina Cel7a In Complex With (R)-Dihydroxy-
Phenanthrenolol
pdb|2V3R|A Chain A, Hypocrea Jecorina Cel7a In Complex With (S)-Dihydroxy-
Phenanthrenolol
Length = 434
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC 70
Q N A ++++A+DT+ ++ + L N +D+ D+ LPC
Sbjct: 101 QKNVGARLYLMASDTTYQEFTLLGNEFSFDV-DVSQLPC 138
>pdb|1Q2E|A Chain A, Cellobiohydrolase Cel7a With Loop Deletion 245-252 And
Bound Non- Hydrolysable Cellotetraose
pdb|1Q2E|B Chain B, Cellobiohydrolase Cel7a With Loop Deletion 245-252 And
Bound Non- Hydrolysable Cellotetraose
Length = 426
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC 70
Q N A ++++A+DT+ ++ + L N +D+ D+ LPC
Sbjct: 101 QKNVGARLYLMASDTTYQEFTLLGNEFSFDV-DVSQLPC 138
>pdb|2V3Q|A Chain A, Serendipitous Discovery And X-Ray Structure Of A Human
Phosphate Binding Apolipoprotein
Length = 376
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 194 DGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAPVYPVGPLARSVASSP 253
DG + D + A+G + D + TLA L D + RV K V V +S A++
Sbjct: 192 DGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVARVGKGVVNGVAVEGKSPAAAN 251
Query: 254 VSGSHVVL 261
VS + V+
Sbjct: 252 VSAAISVV 259
>pdb|2CEL|A Chain A, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|2CEL|B Chain B, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|3CEL|A Chain A, Active-Site Mutant E212q Determined At Ph 6.0 With
Cellobiose Bound In The Active Site
pdb|5CEL|A Chain A, Cbh1 (E212q) Cellotetraose Complex
pdb|6CEL|A Chain A, Cbh1 (E212q) Cellopentaose Complex
Length = 434
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC 70
Q N A ++++A+DT+ ++ + L N +D+ D+ LPC
Sbjct: 101 QKNVGARLYLMASDTTYQEFTLLGNEFSFDV-DVSQLPC 138
>pdb|7CEL|A Chain A, Cbh1 (E217q) In Complex With Cellohexaose And Cellobiose
Length = 434
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC 70
Q N A ++++A+DT+ ++ + L N +D+ D+ LPC
Sbjct: 101 QKNVGARLYLMASDTTYQEFTLLGNEFSFDV-DVSQLPC 138
>pdb|1EGN|A Chain A, Cellobiohydrolase Cel7a (E223s, A224h, L225v, T226a,
D262g) Mutant
Length = 434
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC 70
Q N A ++++A+DT+ ++ + L N +D+ D+ LPC
Sbjct: 101 QKNVGARLYLMASDTTYQEFTLLGNEFSFDV-DVSQLPC 138
>pdb|4CEL|A Chain A, Active-site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|4CEL|B Chain B, Active-site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
Length = 434
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC 70
Q N A ++++A+DT+ ++ + L N +D+ D+ LPC
Sbjct: 101 QKNVGARLYLMASDTTYQEFTLLGNEFSFDV-DVSQLPC 138
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 355 MWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQ 399
W P +LAH LTH + +E+ GVP+++ P +A +
Sbjct: 287 QWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,190,890
Number of Sequences: 62578
Number of extensions: 572249
Number of successful extensions: 1424
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 38
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)