Query 011099
Match_columns 493
No_of_seqs 176 out of 1429
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 2.5E-72 5.5E-77 562.1 45.4 465 1-481 1-469 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 8.1E-70 1.8E-74 540.8 44.5 460 5-480 3-467 (470)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 5.9E-69 1.3E-73 537.7 45.3 440 1-481 1-450 (451)
4 PLN00164 glucosyltransferase; 100.0 7.7E-69 1.7E-73 542.5 45.6 459 5-482 3-474 (480)
5 PLN02173 UDP-glucosyl transfer 100.0 8.7E-69 1.9E-73 533.9 44.4 427 1-480 1-447 (449)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.4E-68 1.6E-72 533.4 43.7 445 4-484 8-474 (477)
7 PLN02207 UDP-glycosyltransfera 100.0 1.9E-67 4.1E-72 526.1 45.3 443 5-482 3-466 (468)
8 PLN02555 limonoid glucosyltran 100.0 1.7E-67 3.7E-72 528.9 43.5 451 1-482 1-470 (480)
9 PLN02534 UDP-glycosyltransfera 100.0 4.3E-67 9.3E-72 526.6 45.3 446 5-481 8-486 (491)
10 PLN03004 UDP-glycosyltransfera 100.0 2.3E-67 4.9E-72 524.0 40.3 441 1-470 1-450 (451)
11 PLN02562 UDP-glycosyltransfera 100.0 7E-67 1.5E-71 524.4 43.1 433 1-480 1-448 (448)
12 PLN02210 UDP-glucosyl transfer 100.0 1.2E-66 2.7E-71 523.1 43.9 429 4-480 7-454 (456)
13 PLN02208 glycosyltransferase f 100.0 8.8E-67 1.9E-71 520.8 42.5 425 1-482 1-440 (442)
14 PLN03007 UDP-glucosyltransfera 100.0 5.3E-66 1.2E-70 524.7 44.4 447 1-481 1-480 (482)
15 PLN02670 transferase, transfer 100.0 7.9E-66 1.7E-70 515.0 43.6 439 5-483 6-467 (472)
16 PLN02764 glycosyltransferase f 100.0 1.1E-65 2.4E-70 509.7 43.1 429 1-483 1-447 (453)
17 PLN02554 UDP-glycosyltransfera 100.0 7.1E-66 1.5E-70 523.0 42.4 451 5-482 2-479 (481)
18 PLN02152 indole-3-acetate beta 100.0 1.1E-65 2.5E-70 512.4 41.5 434 5-479 3-454 (455)
19 PLN02167 UDP-glycosyltransfera 100.0 4.3E-65 9.2E-70 516.5 42.8 448 4-481 2-472 (475)
20 PLN00414 glycosyltransferase f 100.0 9.9E-65 2.2E-69 506.6 43.1 420 5-481 4-440 (446)
21 PLN02448 UDP-glycosyltransfera 100.0 2.2E-64 4.7E-69 510.4 44.4 437 3-481 8-457 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 6.3E-46 1.4E-50 378.1 30.1 377 6-460 21-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 7E-48 1.5E-52 399.3 1.4 381 7-460 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 5.9E-43 1.3E-47 351.3 23.7 375 11-479 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3E-43 6.5E-48 355.0 17.0 394 6-478 1-400 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 9.5E-42 2.1E-46 353.5 18.2 408 5-460 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 5.4E-40 1.2E-44 325.9 21.7 390 5-480 1-399 (406)
28 PRK12446 undecaprenyldiphospho 99.9 1.9E-25 4.2E-30 219.1 25.7 323 7-453 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.2E-22 2.6E-27 198.4 24.8 305 6-438 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.7E-21 5.8E-26 187.5 28.4 313 6-442 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.1E-20 2.3E-25 184.3 23.1 83 350-443 230-316 (321)
32 PRK00726 murG undecaprenyldiph 99.8 5.3E-17 1.1E-21 161.2 28.6 341 6-479 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 1.8E-15 4E-20 149.8 26.8 314 7-443 1-326 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 2.1E-15 4.6E-20 150.2 21.7 352 6-476 6-383 (385)
35 TIGR01133 murG undecaprenyldip 99.7 4.2E-14 9.2E-19 139.9 27.2 78 358-443 243-323 (348)
36 PRK13609 diacylglycerol glucos 99.6 3.4E-13 7.4E-18 135.1 26.9 135 269-443 201-340 (380)
37 TIGR03590 PseG pseudaminic aci 99.6 5.5E-14 1.2E-18 133.7 19.2 104 271-405 171-278 (279)
38 COG4671 Predicted glycosyl tra 99.5 1E-12 2.2E-17 121.7 19.8 336 5-442 9-366 (400)
39 PRK00025 lpxB lipid-A-disaccha 99.5 1.1E-12 2.3E-17 131.6 21.6 111 6-135 2-115 (380)
40 PRK13608 diacylglycerol glucos 99.5 3.2E-12 7E-17 128.1 22.0 165 269-480 201-370 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 1.1E-14 2.3E-19 128.0 -1.1 87 349-443 55-146 (167)
42 PLN02605 monogalactosyldiacylg 99.4 3.8E-11 8.3E-16 120.2 22.5 80 350-441 266-347 (382)
43 TIGR03492 conserved hypothetic 99.4 3.3E-10 7.2E-15 113.2 24.8 81 351-443 281-366 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 1.2E-12 2.6E-17 111.3 5.1 118 8-139 1-131 (139)
45 cd03814 GT1_like_2 This family 99.2 9E-08 2E-12 94.6 31.7 81 349-443 247-334 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.1 7.4E-08 1.6E-12 99.1 29.3 138 272-453 264-413 (465)
47 COG3980 spsG Spore coat polysa 99.1 1.5E-08 3.3E-13 91.6 18.3 284 6-443 1-295 (318)
48 cd03823 GT1_ExpE7_like This fa 99.0 9E-07 2E-11 87.2 30.4 81 349-443 243-331 (359)
49 cd03800 GT1_Sucrose_synthase T 99.0 1E-06 2.2E-11 88.6 30.6 81 349-443 283-370 (398)
50 cd03794 GT1_wbuB_like This fam 99.0 7.7E-07 1.7E-11 88.5 27.6 82 348-443 274-367 (394)
51 cd03817 GT1_UGDG_like This fam 98.9 1.6E-06 3.4E-11 85.8 29.1 80 349-443 259-345 (374)
52 cd04962 GT1_like_5 This family 98.9 4.8E-06 1E-10 82.9 29.6 91 350-454 254-350 (371)
53 PRK10307 putative glycosyl tra 98.9 1.1E-05 2.3E-10 81.8 32.4 93 350-454 285-387 (412)
54 TIGR00236 wecB UDP-N-acetylglu 98.8 4.6E-07 1E-11 90.2 21.3 79 349-443 255-336 (365)
55 PRK05749 3-deoxy-D-manno-octul 98.8 2E-06 4.4E-11 87.5 26.2 73 360-443 314-390 (425)
56 cd03808 GT1_cap1E_like This fa 98.8 1.1E-05 2.3E-10 79.2 30.1 81 349-443 246-331 (359)
57 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 4E-07 8.6E-12 90.6 19.8 133 269-443 197-339 (363)
58 cd03816 GT1_ALG1_like This fam 98.8 1.3E-05 2.9E-10 81.1 31.0 90 350-455 295-399 (415)
59 cd03818 GT1_ExpC_like This fam 98.8 2.4E-05 5.2E-10 78.8 31.5 83 349-443 281-368 (396)
60 cd03801 GT1_YqgM_like This fam 98.8 1.7E-05 3.7E-10 77.8 29.2 82 348-443 255-343 (374)
61 TIGR03449 mycothiol_MshA UDP-N 98.8 7.7E-05 1.7E-09 75.4 34.5 90 349-452 283-380 (405)
62 cd03795 GT1_like_4 This family 98.7 1E-05 2.2E-10 79.9 25.6 85 348-443 243-334 (357)
63 cd03798 GT1_wlbH_like This fam 98.7 4.5E-05 9.7E-10 75.1 29.4 83 349-443 259-346 (377)
64 cd03825 GT1_wcfI_like This fam 98.7 4.3E-05 9.2E-10 75.7 28.7 80 350-443 245-332 (365)
65 cd03820 GT1_amsD_like This fam 98.7 6.3E-05 1.4E-09 73.3 29.5 81 350-443 236-321 (348)
66 cd03796 GT1_PIG-A_like This fa 98.6 5E-05 1.1E-09 76.6 29.1 77 350-442 251-334 (398)
67 cd03821 GT1_Bme6_like This fam 98.6 9.3E-05 2E-09 73.0 30.4 81 349-443 262-347 (375)
68 PRK09922 UDP-D-galactose:(gluc 98.6 3E-05 6.5E-10 77.1 26.7 94 349-456 236-342 (359)
69 cd03805 GT1_ALG2_like This fam 98.6 0.00012 2.6E-09 73.5 31.4 90 349-453 280-377 (392)
70 PF04007 DUF354: Protein of un 98.6 5.2E-05 1.1E-09 73.3 25.6 104 15-138 9-112 (335)
71 cd05844 GT1_like_7 Glycosyltra 98.5 0.0001 2.3E-09 73.1 26.9 81 349-443 245-338 (367)
72 cd03819 GT1_WavL_like This fam 98.5 0.00035 7.6E-09 68.9 30.0 80 349-440 246-329 (355)
73 cd03799 GT1_amsK_like This is 98.5 0.00032 6.9E-09 69.1 29.0 81 349-443 236-329 (355)
74 TIGR02472 sucr_P_syn_N sucrose 98.4 0.00075 1.6E-08 69.0 31.4 82 350-443 318-408 (439)
75 cd03802 GT1_AviGT4_like This f 98.4 0.00032 7E-09 68.5 27.4 79 349-441 224-308 (335)
76 cd03822 GT1_ecORF704_like This 98.4 0.00049 1.1E-08 67.9 28.9 79 350-443 248-336 (366)
77 cd03807 GT1_WbnK_like This fam 98.4 0.00089 1.9E-08 65.7 29.5 77 350-442 252-333 (365)
78 cd03811 GT1_WabH_like This fam 98.4 0.00034 7.4E-09 68.1 25.9 82 349-442 246-333 (353)
79 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.00035 7.6E-09 68.0 24.3 76 371-457 327-403 (419)
80 cd03812 GT1_CapH_like This fam 98.3 0.00096 2.1E-08 65.9 27.4 79 350-443 250-333 (358)
81 KOG3349 Predicted glycosyltran 98.3 5.3E-06 1.1E-10 67.9 8.5 115 271-415 4-131 (170)
82 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00011 2.5E-09 72.8 19.5 131 270-440 201-338 (365)
83 cd04955 GT1_like_6 This family 98.2 0.0022 4.9E-08 63.3 28.9 78 348-443 247-332 (363)
84 cd04951 GT1_WbdM_like This fam 98.2 0.00056 1.2E-08 67.5 24.5 77 349-441 245-326 (360)
85 PRK14089 ipid-A-disaccharide s 98.2 2.9E-05 6.4E-10 75.6 14.5 73 358-437 228-315 (347)
86 TIGR02468 sucrsPsyn_pln sucros 98.1 0.0073 1.6E-07 66.4 31.8 92 350-453 549-650 (1050)
87 PLN02846 digalactosyldiacylgly 98.1 0.0036 7.7E-08 63.5 27.5 74 352-442 287-364 (462)
88 PRK01021 lpxB lipid-A-disaccha 98.1 0.0031 6.8E-08 65.0 26.2 93 360-457 483-588 (608)
89 TIGR03087 stp1 sugar transfera 98.0 0.0014 3.1E-08 66.0 22.3 80 348-443 279-364 (397)
90 TIGR03088 stp2 sugar transfera 98.0 0.022 4.8E-07 56.7 31.2 80 350-443 256-340 (374)
91 PF02350 Epimerase_2: UDP-N-ac 98.0 7.3E-05 1.6E-09 73.4 11.6 131 268-441 178-318 (346)
92 PF02684 LpxB: Lipid-A-disacch 97.9 0.005 1.1E-07 60.6 22.9 102 358-468 253-364 (373)
93 PLN02949 transferase, transfer 97.9 0.041 8.8E-07 56.4 31.4 79 349-441 335-422 (463)
94 cd03809 GT1_mtfB_like This fam 97.9 0.003 6.6E-08 62.2 22.0 80 348-443 252-338 (365)
95 TIGR02470 sucr_synth sucrose s 97.9 0.062 1.3E-06 57.9 36.8 130 6-136 256-415 (784)
96 COG0381 WecB UDP-N-acetylgluco 97.9 0.0026 5.7E-08 61.5 19.9 318 8-443 5-343 (383)
97 PLN00142 sucrose synthase 97.8 0.026 5.7E-07 60.7 28.9 119 17-137 304-439 (815)
98 TIGR02149 glgA_Coryne glycogen 97.8 0.033 7.3E-07 55.7 28.6 82 354-443 266-354 (388)
99 PLN02275 transferase, transfer 97.8 0.054 1.2E-06 54.0 31.7 74 350-439 287-371 (371)
100 COG0763 LpxB Lipid A disacchar 97.8 0.0026 5.7E-08 61.3 17.9 108 362-479 261-379 (381)
101 cd03806 GT1_ALG11_like This fa 97.7 0.033 7.1E-07 56.6 26.8 79 349-443 305-394 (419)
102 PRK15179 Vi polysaccharide bio 97.7 0.11 2.4E-06 55.6 32.5 81 349-441 574-659 (694)
103 PRK00654 glgA glycogen synthas 97.6 0.027 5.8E-07 58.1 24.7 70 361-440 352-427 (466)
104 cd04946 GT1_AmsK_like This fam 97.6 0.0017 3.6E-08 65.7 14.3 84 349-443 289-379 (407)
105 cd03792 GT1_Trehalose_phosphor 97.5 0.11 2.4E-06 51.7 28.5 78 350-443 253-339 (372)
106 COG5017 Uncharacterized conser 97.4 0.00057 1.2E-08 55.1 7.0 53 360-415 60-120 (161)
107 PRK15427 colanic acid biosynth 97.4 0.0053 1.1E-07 62.0 15.9 81 349-443 279-373 (406)
108 PF13844 Glyco_transf_41: Glyc 97.4 0.0016 3.5E-08 65.4 11.1 172 269-481 283-462 (468)
109 PRK15484 lipopolysaccharide 1, 97.3 0.017 3.8E-07 57.7 17.4 81 350-443 258-346 (380)
110 PLN02316 synthase/transferase 97.3 0.26 5.6E-06 54.8 27.2 106 361-480 915-1032(1036)
111 cd03804 GT1_wbaZ_like This fam 97.2 0.0029 6.2E-08 62.5 11.4 126 274-442 198-327 (351)
112 cd03813 GT1_like_3 This family 97.2 0.28 6E-06 50.7 25.5 81 349-443 354-444 (475)
113 PLN02501 digalactosyldiacylgly 97.1 0.43 9.3E-06 50.4 25.9 76 351-443 603-683 (794)
114 cd03791 GT1_Glycogen_synthase_ 97.1 0.23 5.1E-06 51.3 24.2 71 361-441 366-442 (476)
115 cd04950 GT1_like_1 Glycosyltra 97.0 0.49 1.1E-05 47.2 28.2 79 349-443 254-342 (373)
116 PRK09814 beta-1,6-galactofuran 96.8 0.0078 1.7E-07 59.0 9.6 108 350-476 208-330 (333)
117 PF00534 Glycos_transf_1: Glyc 96.7 0.0071 1.5E-07 52.8 7.8 81 349-443 73-160 (172)
118 PF13692 Glyco_trans_1_4: Glyc 96.6 0.0076 1.7E-07 50.3 7.2 78 350-441 54-135 (135)
119 cd01635 Glycosyltransferase_GT 96.6 0.2 4.4E-06 45.2 17.1 26 15-41 12-37 (229)
120 PRK10125 putative glycosyl tra 96.3 1 2.3E-05 45.4 21.7 60 361-435 302-365 (405)
121 COG1817 Uncharacterized protei 96.2 1.2 2.6E-05 42.0 19.3 108 13-139 7-114 (346)
122 TIGR02193 heptsyl_trn_I lipopo 96.0 0.28 6E-06 47.7 15.7 41 7-47 1-42 (319)
123 cd04949 GT1_gtfA_like This fam 96.0 0.072 1.6E-06 53.0 11.6 94 350-454 262-359 (372)
124 PF06722 DUF1205: Protein of u 96.0 0.012 2.5E-07 45.9 4.4 55 256-310 26-85 (97)
125 PRK10422 lipopolysaccharide co 95.8 0.87 1.9E-05 45.0 18.4 111 1-134 1-113 (352)
126 TIGR02918 accessory Sec system 95.7 0.43 9.2E-06 49.5 16.0 99 350-455 377-481 (500)
127 COG3914 Spy Predicted O-linked 95.4 0.3 6.4E-06 49.7 12.7 134 268-436 427-573 (620)
128 PRK15490 Vi polysaccharide bio 95.2 4.8 0.0001 41.9 24.0 62 349-417 455-521 (578)
129 PF13477 Glyco_trans_4_2: Glyc 95.1 0.25 5.4E-06 41.2 10.2 101 8-136 2-106 (139)
130 PF13579 Glyco_trans_4_4: Glyc 94.6 0.078 1.7E-06 45.1 5.7 96 21-136 6-103 (160)
131 PF13524 Glyco_trans_1_2: Glyc 94.3 0.38 8.2E-06 37.0 8.6 82 374-476 9-91 (92)
132 TIGR02095 glgA glycogen/starch 94.2 1 2.3E-05 46.4 14.1 77 350-440 347-436 (473)
133 KOG4626 O-linked N-acetylgluco 94.0 0.46 9.9E-06 48.8 10.1 121 269-416 757-887 (966)
134 PRK10017 colanic acid biosynth 93.9 1.6 3.5E-05 44.1 14.2 101 361-480 323-423 (426)
135 PRK14098 glycogen synthase; Pr 93.5 2.2 4.7E-05 44.2 14.7 81 350-440 363-450 (489)
136 cd03789 GT1_LPS_heptosyltransf 93.2 7.7 0.00017 36.7 19.4 41 7-47 1-42 (279)
137 PF01975 SurE: Survival protei 93.0 0.44 9.5E-06 42.5 7.6 40 6-47 1-40 (196)
138 PHA01633 putative glycosyl tra 92.8 2 4.4E-05 41.9 12.5 83 350-441 202-307 (335)
139 PF08660 Alg14: Oligosaccharid 92.5 1.6 3.5E-05 38.0 10.2 119 11-138 3-130 (170)
140 PRK10964 ADP-heptose:LPS hepto 92.3 6.1 0.00013 38.4 15.4 40 6-45 1-41 (322)
141 PHA01630 putative group 1 glyc 92.1 4.4 9.6E-05 39.6 14.1 110 355-479 196-328 (331)
142 TIGR02195 heptsyl_trn_II lipop 91.0 16 0.00035 35.6 18.8 103 7-134 1-105 (334)
143 TIGR02201 heptsyl_trn_III lipo 90.9 17 0.00037 35.6 18.0 106 7-134 1-108 (344)
144 COG1618 Predicted nucleotide k 89.7 2.5 5.4E-05 36.1 8.2 105 1-119 1-111 (179)
145 PF13439 Glyco_transf_4: Glyco 89.1 2.6 5.7E-05 36.1 8.7 99 16-139 12-111 (177)
146 PF12000 Glyco_trans_4_3: Gkyc 88.5 4.9 0.00011 34.9 9.6 93 31-137 1-96 (171)
147 PF06258 Mito_fiss_Elm1: Mitoc 87.8 8.4 0.00018 37.2 11.8 57 358-417 221-281 (311)
148 PRK13932 stationary phase surv 87.1 9.8 0.00021 35.5 11.2 41 4-47 4-44 (257)
149 COG0859 RfaF ADP-heptose:LPS h 86.1 21 0.00045 34.9 13.8 105 6-134 2-107 (334)
150 cd02067 B12-binding B12 bindin 85.0 15 0.00033 29.6 10.4 45 7-52 1-45 (119)
151 COG1703 ArgK Putative periplas 85.0 12 0.00027 35.4 10.7 116 5-134 51-171 (323)
152 KOG2941 Beta-1,4-mannosyltrans 84.0 43 0.00093 32.5 24.1 126 4-141 11-141 (444)
153 PLN02939 transferase, transfer 83.6 33 0.00072 38.3 14.8 82 350-440 838-930 (977)
154 PF07429 Glyco_transf_56: 4-al 83.0 22 0.00048 34.5 11.7 82 349-440 245-332 (360)
155 PRK02261 methylaspartate mutas 82.3 3 6.4E-05 34.9 5.1 52 4-56 2-53 (137)
156 TIGR02095 glgA glycogen/starch 82.2 16 0.00035 37.6 11.7 38 6-44 1-44 (473)
157 cd00561 CobA_CobO_BtuR ATP:cor 80.4 37 0.00079 29.2 11.3 102 7-119 4-106 (159)
158 COG0496 SurE Predicted acid ph 80.2 12 0.00027 34.5 8.7 111 6-138 1-126 (252)
159 PRK06718 precorrin-2 dehydroge 80.1 43 0.00092 30.1 12.2 101 351-461 56-165 (202)
160 PRK10916 ADP-heptose:LPS hepto 80.1 16 0.00035 35.9 10.4 104 6-134 1-106 (348)
161 PRK05986 cob(I)alamin adenolsy 80.0 39 0.00084 30.0 11.5 103 6-119 23-126 (191)
162 PRK02797 4-alpha-L-fucosyltran 79.8 36 0.00077 32.6 11.8 78 352-439 210-292 (322)
163 PRK13933 stationary phase surv 79.7 30 0.00064 32.3 11.2 39 6-47 1-39 (253)
164 TIGR02919 accessory Sec system 79.4 38 0.00081 34.5 12.8 79 351-443 331-413 (438)
165 PRK13935 stationary phase surv 79.2 27 0.00058 32.5 10.7 39 6-47 1-39 (253)
166 TIGR03713 acc_sec_asp1 accesso 77.4 4.2 9E-05 42.4 5.5 75 350-443 410-490 (519)
167 TIGR00715 precor6x_red precorr 76.5 47 0.001 31.1 11.6 93 6-136 1-99 (256)
168 PRK13934 stationary phase surv 76.0 40 0.00086 31.6 10.9 39 6-47 1-39 (266)
169 PRK05973 replicative DNA helic 75.6 21 0.00046 32.9 9.0 47 6-53 65-111 (237)
170 TIGR00087 surE 5'/3'-nucleotid 75.0 26 0.00057 32.4 9.5 39 6-48 1-40 (244)
171 TIGR02400 trehalose_OtsA alpha 74.8 14 0.00029 38.0 8.3 103 355-480 342-455 (456)
172 cd03788 GT1_TPS Trehalose-6-Ph 74.3 9.7 0.00021 39.1 7.2 104 353-479 345-459 (460)
173 PF04413 Glycos_transf_N: 3-De 73.9 15 0.00032 32.5 7.3 101 8-137 23-126 (186)
174 PRK06321 replicative DNA helic 73.1 14 0.00031 37.9 8.0 48 7-55 228-276 (472)
175 PRK14099 glycogen synthase; Pr 72.5 57 0.0012 33.8 12.3 38 4-44 2-47 (485)
176 PF02951 GSH-S_N: Prokaryotic 72.4 6 0.00013 32.1 4.0 39 6-45 1-42 (119)
177 PF05159 Capsule_synth: Capsul 72.0 32 0.00069 32.4 9.7 42 351-395 185-226 (269)
178 PRK05595 replicative DNA helic 71.8 9.5 0.00021 39.0 6.4 49 7-56 203-252 (444)
179 TIGR01470 cysG_Nterm siroheme 71.2 78 0.0017 28.4 14.3 95 360-461 64-165 (205)
180 PRK12342 hypothetical protein; 71.0 54 0.0012 30.6 10.5 96 22-137 40-144 (254)
181 PRK08506 replicative DNA helic 70.9 15 0.00032 37.9 7.5 48 7-55 194-241 (472)
182 PRK00346 surE 5'(3')-nucleotid 70.3 74 0.0016 29.6 11.2 39 6-47 1-39 (250)
183 PRK08305 spoVFB dipicolinate s 68.7 8 0.00017 34.4 4.4 43 1-44 1-43 (196)
184 PRK03359 putative electron tra 68.4 67 0.0014 30.0 10.6 40 97-138 103-148 (256)
185 PRK05636 replicative DNA helic 67.5 9.8 0.00021 39.5 5.4 49 7-56 267-316 (505)
186 PF04464 Glyphos_transf: CDP-G 67.3 8.7 0.00019 38.1 4.9 97 350-460 253-353 (369)
187 TIGR03600 phage_DnaB phage rep 66.7 21 0.00047 36.1 7.7 48 7-55 196-244 (421)
188 PRK08760 replicative DNA helic 65.3 21 0.00046 36.8 7.4 48 7-55 231-279 (476)
189 COG4370 Uncharacterized protei 64.4 13 0.00028 35.2 4.9 82 352-443 298-381 (412)
190 cd01974 Nitrogenase_MoFe_beta 64.1 74 0.0016 32.4 11.0 35 97-136 368-402 (435)
191 cd03793 GT1_Glycogen_synthase_ 64.1 29 0.00063 36.4 7.9 80 358-441 467-552 (590)
192 TIGR02015 BchY chlorophyllide 63.4 58 0.0013 33.0 10.0 90 7-136 287-380 (422)
193 PF02441 Flavoprotein: Flavopr 63.3 10 0.00022 31.2 3.9 45 6-52 1-45 (129)
194 PF02310 B12-binding: B12 bind 61.0 17 0.00037 29.2 4.7 37 6-43 1-37 (121)
195 PF00551 Formyl_trans_N: Formy 61.0 91 0.002 27.3 9.7 107 6-138 1-110 (181)
196 PF06925 MGDG_synth: Monogalac 60.8 28 0.0006 30.1 6.3 45 91-137 74-124 (169)
197 TIGR02398 gluc_glyc_Psyn gluco 60.8 83 0.0018 32.5 10.6 109 351-481 364-482 (487)
198 COG0438 RfaG Glycosyltransfera 60.7 1.5E+02 0.0032 27.8 16.3 80 349-442 257-343 (381)
199 PRK05748 replicative DNA helic 59.0 37 0.00081 34.7 7.8 47 7-54 205-252 (448)
200 cd01980 Chlide_reductase_Y Chl 58.7 1.1E+02 0.0024 31.0 11.1 32 100-136 344-375 (416)
201 TIGR00665 DnaB replicative DNA 58.1 37 0.0008 34.6 7.6 48 7-55 197-245 (434)
202 PRK08006 replicative DNA helic 57.7 53 0.0011 33.9 8.6 49 7-56 226-275 (471)
203 PHA02542 41 41 helicase; Provi 57.6 39 0.00085 34.8 7.6 46 7-53 192-237 (473)
204 PF02571 CbiJ: Precorrin-6x re 56.6 53 0.0011 30.6 7.7 94 6-136 1-100 (249)
205 PRK06249 2-dehydropantoate 2-r 56.5 15 0.00033 35.4 4.4 38 1-44 1-38 (313)
206 PRK00090 bioD dithiobiotin syn 56.2 55 0.0012 29.6 7.8 34 8-42 2-36 (222)
207 PRK13931 stationary phase surv 55.7 1.2E+02 0.0027 28.4 9.9 99 22-137 16-129 (261)
208 PRK06749 replicative DNA helic 55.3 39 0.00085 34.3 7.2 49 7-56 188-236 (428)
209 PF02702 KdpD: Osmosensitive K 55.2 53 0.0011 29.4 6.9 49 5-54 5-53 (211)
210 TIGR02655 circ_KaiC circadian 54.5 1.5E+02 0.0032 30.8 11.4 114 6-138 264-398 (484)
211 PRK11519 tyrosine kinase; Prov 54.3 1.5E+02 0.0033 32.5 11.9 118 5-137 525-668 (719)
212 PRK08840 replicative DNA helic 53.9 64 0.0014 33.2 8.4 49 7-56 219-268 (464)
213 cd02070 corrinoid_protein_B12- 53.8 25 0.00054 31.5 5.0 47 5-52 82-128 (201)
214 PRK07773 replicative DNA helic 53.2 41 0.00089 37.8 7.5 50 7-56 219-268 (886)
215 PRK09165 replicative DNA helic 53.2 59 0.0013 33.8 8.2 48 7-55 219-281 (497)
216 PRK06904 replicative DNA helic 53.1 53 0.0012 33.9 7.8 49 7-56 223-272 (472)
217 TIGR03029 EpsG chain length de 52.7 2E+02 0.0044 26.9 11.8 38 5-43 102-141 (274)
218 PRK01077 cobyrinic acid a,c-di 52.0 82 0.0018 32.3 9.0 106 7-138 5-123 (451)
219 TIGR02370 pyl_corrinoid methyl 51.9 29 0.00062 31.0 5.0 50 5-55 84-133 (197)
220 PRK07004 replicative DNA helic 51.6 54 0.0012 33.7 7.5 48 7-55 215-263 (460)
221 PRK04328 hypothetical protein; 51.3 2E+02 0.0044 26.6 11.8 45 6-51 24-68 (249)
222 PLN03063 alpha,alpha-trehalose 51.0 45 0.00097 37.0 7.2 108 355-484 362-480 (797)
223 cd01121 Sms Sms (bacterial rad 50.5 2E+02 0.0044 28.6 11.1 41 7-48 84-124 (372)
224 cd02071 MM_CoA_mut_B12_BD meth 50.2 27 0.00058 28.4 4.2 45 7-52 1-45 (122)
225 PF12146 Hydrolase_4: Putative 49.5 46 0.001 24.6 5.0 35 6-41 16-50 (79)
226 TIGR01182 eda Entner-Doudoroff 48.9 1.5E+02 0.0033 26.6 9.1 40 97-139 72-111 (204)
227 PRK06067 flagellar accessory p 48.8 43 0.00094 30.6 5.9 43 6-49 26-68 (234)
228 PF01012 ETF: Electron transfe 48.8 77 0.0017 27.1 7.1 97 22-137 20-122 (164)
229 PLN02470 acetolactate synthase 47.8 64 0.0014 34.4 7.7 29 366-394 75-109 (585)
230 TIGR00347 bioD dethiobiotin sy 47.5 87 0.0019 26.7 7.3 28 12-40 5-32 (166)
231 PF01075 Glyco_transf_9: Glyco 47.3 43 0.00092 30.8 5.7 99 269-393 104-208 (247)
232 PRK10637 cysG siroheme synthas 46.9 2.8E+02 0.0062 28.4 12.0 92 360-461 67-168 (457)
233 TIGR00725 conserved hypothetic 46.5 42 0.00091 28.8 5.0 38 358-395 83-123 (159)
234 COG0801 FolK 7,8-dihydro-6-hyd 46.2 43 0.00094 28.7 4.9 33 272-304 3-35 (160)
235 cd01968 Nitrogenase_NifE_I Nit 45.9 1.8E+02 0.0039 29.4 10.2 34 97-135 347-380 (410)
236 PRK14501 putative bifunctional 45.9 34 0.00073 37.6 5.3 114 353-485 346-466 (726)
237 PF07355 GRDB: Glycine/sarcosi 45.8 43 0.00093 32.5 5.3 43 92-136 66-118 (349)
238 PF02142 MGS: MGS-like domain 45.3 24 0.00053 27.1 3.1 84 22-133 2-94 (95)
239 COG2185 Sbm Methylmalonyl-CoA 45.2 34 0.00074 28.6 4.0 44 4-48 11-54 (143)
240 PTZ00445 p36-lilke protein; Pr 45.2 79 0.0017 28.5 6.5 39 97-136 166-205 (219)
241 PRK07313 phosphopantothenoylcy 45.1 2.2E+02 0.0047 25.1 10.0 52 387-440 113-179 (182)
242 smart00851 MGS MGS-like domain 44.5 1.2E+02 0.0026 22.9 6.8 28 22-52 2-29 (90)
243 TIGR01283 nifE nitrogenase mol 44.4 2.2E+02 0.0048 29.2 10.8 34 97-135 386-419 (456)
244 PRK10490 sensor protein KdpD; 44.4 1E+02 0.0022 34.9 8.8 43 5-48 24-66 (895)
245 PF04493 Endonuclease_5: Endon 44.2 37 0.00081 30.5 4.4 43 94-136 75-124 (206)
246 PF01081 Aldolase: KDPG and KH 44.0 2.4E+02 0.0051 25.2 9.5 41 96-139 71-111 (196)
247 cd07038 TPP_PYR_PDC_IPDC_like 43.9 61 0.0013 27.8 5.6 27 368-394 60-92 (162)
248 PRK13011 formyltetrahydrofolat 43.8 2.2E+02 0.0049 27.1 9.9 102 290-439 156-259 (286)
249 cd00984 DnaB_C DnaB helicase C 43.7 89 0.0019 28.6 7.2 47 7-53 15-61 (242)
250 cd07037 TPP_PYR_MenD Pyrimidin 43.4 56 0.0012 28.1 5.3 25 370-394 63-93 (162)
251 PRK13010 purU formyltetrahydro 43.2 3E+02 0.0065 26.3 10.6 102 290-439 160-263 (289)
252 PRK07206 hypothetical protein; 43.2 1.1E+02 0.0024 30.8 8.4 32 7-44 4-35 (416)
253 COG0552 FtsY Signal recognitio 43.0 85 0.0018 30.4 6.8 93 5-118 139-231 (340)
254 cd06559 Endonuclease_V Endonuc 42.9 29 0.00062 31.3 3.5 42 95-136 80-128 (208)
255 PRK05632 phosphate acetyltrans 42.9 1.8E+02 0.0038 31.7 10.2 101 7-138 4-115 (684)
256 PRK14478 nitrogenase molybdenu 42.9 2.1E+02 0.0044 29.6 10.2 92 6-134 325-416 (475)
257 COG0299 PurN Folate-dependent 42.8 1.3E+02 0.0028 26.8 7.3 102 289-438 69-172 (200)
258 COG1797 CobB Cobyrinic acid a, 42.8 47 0.001 33.4 5.2 107 7-140 2-122 (451)
259 PF02572 CobA_CobO_BtuR: ATP:c 42.5 2.2E+02 0.0048 24.8 8.8 102 7-119 5-107 (172)
260 cd03466 Nitrogenase_NifN_2 Nit 42.4 2E+02 0.0043 29.2 10.0 34 97-135 363-396 (429)
261 cd07039 TPP_PYR_POX Pyrimidine 42.1 69 0.0015 27.6 5.7 27 368-394 64-96 (164)
262 cd00550 ArsA_ATPase Oxyanion-t 41.8 1.4E+02 0.0031 27.7 8.2 37 8-45 3-39 (254)
263 PRK05562 precorrin-2 dehydroge 41.8 2.8E+02 0.006 25.4 13.2 89 361-460 81-179 (223)
264 KOG0081 GTPase Rab27, small G 41.7 70 0.0015 27.2 5.3 45 95-139 106-165 (219)
265 PRK11823 DNA repair protein Ra 41.7 3E+02 0.0064 28.2 11.1 42 7-49 82-123 (446)
266 PRK05647 purN phosphoribosylgl 41.6 1.8E+02 0.0038 26.1 8.4 83 6-114 2-86 (200)
267 TIGR03880 KaiC_arch_3 KaiC dom 41.5 91 0.002 28.2 6.8 45 7-52 18-62 (224)
268 TIGR00708 cobA cob(I)alamin ad 41.3 2.4E+02 0.0052 24.6 10.5 101 7-119 7-108 (173)
269 COG1484 DnaC DNA replication p 41.1 26 0.00057 32.7 3.1 41 5-46 105-145 (254)
270 cd01977 Nitrogenase_VFe_alpha 40.8 1.7E+02 0.0037 29.6 9.2 32 99-135 351-382 (415)
271 TIGR00379 cobB cobyrinic acid 40.5 1.5E+02 0.0032 30.4 8.7 106 8-139 2-120 (449)
272 cd02069 methionine_synthase_B1 39.6 58 0.0013 29.5 5.0 49 5-54 88-136 (213)
273 TIGR03877 thermo_KaiC_1 KaiC d 39.5 2E+02 0.0044 26.3 8.8 45 6-51 22-66 (237)
274 cd01425 RPS2 Ribosomal protein 39.5 56 0.0012 29.1 4.8 34 106-139 125-160 (193)
275 PRK00784 cobyric acid synthase 39.5 3.4E+02 0.0073 28.2 11.3 34 8-42 5-39 (488)
276 PRK13789 phosphoribosylamine-- 39.4 1.3E+02 0.0027 30.7 7.9 36 1-43 1-36 (426)
277 COG1066 Sms Predicted ATP-depe 38.5 46 0.001 33.2 4.3 102 7-136 95-217 (456)
278 COG2109 BtuR ATP:corrinoid ade 38.1 2.9E+02 0.0063 24.5 10.4 102 8-119 31-133 (198)
279 PRK07114 keto-hydroxyglutarate 38.0 2.9E+02 0.0063 25.2 9.2 31 108-138 91-121 (222)
280 TIGR00655 PurU formyltetrahydr 37.6 1.8E+02 0.004 27.6 8.2 102 289-438 150-253 (280)
281 COG0223 Fmt Methionyl-tRNA for 37.2 75 0.0016 30.5 5.5 35 6-46 2-36 (307)
282 PRK14099 glycogen synthase; Pr 37.2 52 0.0011 34.1 4.9 82 352-442 354-448 (485)
283 PRK08155 acetolactate synthase 37.0 1.4E+02 0.003 31.7 8.1 27 368-394 77-109 (564)
284 PF03308 ArgK: ArgK protein; 37.0 2.4E+02 0.0053 26.4 8.5 118 5-136 29-151 (266)
285 PRK14477 bifunctional nitrogen 37.0 2.7E+02 0.0059 31.6 10.7 35 97-136 380-414 (917)
286 TIGR01918 various_sel_PB selen 36.9 71 0.0015 32.0 5.4 43 92-136 62-114 (431)
287 PRK06456 acetolactate synthase 36.9 1.2E+02 0.0027 32.0 7.8 27 368-394 69-101 (572)
288 TIGR01917 gly_red_sel_B glycin 36.9 71 0.0015 32.0 5.4 44 91-136 61-114 (431)
289 TIGR01284 alt_nitrog_alph nitr 36.8 2.3E+02 0.0049 29.1 9.4 34 97-135 386-419 (457)
290 PF06506 PrpR_N: Propionate ca 36.2 49 0.0011 28.9 3.9 43 96-141 112-155 (176)
291 TIGR01286 nifK nitrogenase mol 36.2 3E+02 0.0065 28.8 10.2 34 97-135 428-461 (515)
292 PRK06732 phosphopantothenate-- 35.9 45 0.00097 30.6 3.8 37 6-43 1-49 (229)
293 PF05225 HTH_psq: helix-turn-h 35.9 56 0.0012 21.2 3.1 27 427-455 1-27 (45)
294 PF04127 DFP: DNA / pantothena 35.6 39 0.00084 29.9 3.1 22 22-44 32-53 (185)
295 cd01394 radB RadB. The archaea 35.6 3.2E+02 0.007 24.4 9.5 37 7-44 21-57 (218)
296 PRK06849 hypothetical protein; 35.4 75 0.0016 31.7 5.6 36 4-44 3-38 (389)
297 COG1435 Tdk Thymidine kinase [ 35.3 3.3E+02 0.0071 24.3 9.1 36 8-44 7-42 (201)
298 PRK00911 dihydroxy-acid dehydr 34.9 2.5E+02 0.0055 29.4 9.1 41 97-139 100-144 (552)
299 TIGR00416 sms DNA repair prote 34.8 1.7E+02 0.0037 30.0 8.1 41 7-48 96-136 (454)
300 COG0467 RAD55 RecA-superfamily 34.7 71 0.0015 29.8 5.0 106 6-119 24-135 (260)
301 cd01124 KaiC KaiC is a circadi 34.5 98 0.0021 26.8 5.7 43 8-51 2-44 (187)
302 TIGR02852 spore_dpaB dipicolin 34.4 54 0.0012 29.0 3.8 37 7-44 2-38 (187)
303 COG1663 LpxK Tetraacyldisaccha 34.3 82 0.0018 30.6 5.3 33 11-44 55-87 (336)
304 TIGR00110 ilvD dihydroxy-acid 34.0 2.9E+02 0.0063 28.9 9.4 40 98-139 81-124 (535)
305 cd02065 B12-binding_like B12 b 33.7 1.1E+02 0.0023 24.5 5.4 43 8-51 2-44 (125)
306 PRK12475 thiamine/molybdopteri 33.6 2.2E+02 0.0048 27.9 8.3 33 5-43 24-57 (338)
307 PRK09302 circadian clock prote 33.5 2.1E+02 0.0046 29.8 8.8 45 6-51 274-318 (509)
308 TIGR00460 fmt methionyl-tRNA f 33.3 58 0.0013 31.5 4.2 32 6-43 1-32 (313)
309 PRK09841 cryptic autophosphory 33.2 6.9E+02 0.015 27.5 14.6 39 5-44 530-570 (726)
310 PRK06027 purU formyltetrahydro 33.2 3.5E+02 0.0076 25.7 9.4 103 289-439 155-259 (286)
311 TIGR02329 propionate_PrpR prop 33.2 2.8E+02 0.0061 29.1 9.4 40 96-138 132-172 (526)
312 KOG3339 Predicted glycosyltran 32.7 3E+02 0.0065 24.3 7.8 23 10-32 42-64 (211)
313 TIGR00639 PurN phosphoribosylg 32.6 3.5E+02 0.0076 23.9 10.9 35 6-44 1-37 (190)
314 COG0541 Ffh Signal recognition 32.5 2.2E+02 0.0047 28.8 7.9 47 5-52 100-146 (451)
315 PF08323 Glyco_transf_5: Starc 32.4 39 0.00085 31.3 2.8 22 22-44 22-43 (245)
316 COG0052 RpsB Ribosomal protein 32.4 47 0.001 30.5 3.2 35 106-140 154-190 (252)
317 PRK13982 bifunctional SbtC-lik 32.3 58 0.0013 33.5 4.2 39 5-44 256-306 (475)
318 COG1422 Predicted membrane pro 32.2 1.6E+02 0.0034 26.2 6.2 37 430-466 59-96 (201)
319 PF03701 UPF0181: Uncharacteri 31.5 1.6E+02 0.0035 19.6 4.8 35 447-485 13-47 (51)
320 PRK12311 rpsB 30S ribosomal pr 31.1 1.2E+02 0.0026 29.5 5.8 35 106-140 150-186 (326)
321 TIGR03878 thermo_KaiC_2 KaiC d 31.0 4.4E+02 0.0096 24.5 12.1 40 6-46 37-76 (259)
322 KOG0100 Molecular chaperones G 31.0 92 0.002 30.9 5.0 53 387-439 500-553 (663)
323 COG2910 Putative NADH-flavin r 30.8 63 0.0014 28.5 3.5 34 6-44 1-34 (211)
324 TIGR00750 lao LAO/AO transport 30.8 4.8E+02 0.01 24.9 11.5 40 5-45 34-73 (300)
325 PRK14098 glycogen synthase; Pr 30.6 84 0.0018 32.6 5.2 41 1-44 1-49 (489)
326 PF05728 UPF0227: Uncharacteri 30.5 1.2E+02 0.0025 26.9 5.3 45 95-139 46-91 (187)
327 PRK09435 membrane ATPase/prote 30.5 5.2E+02 0.011 25.2 10.7 41 5-46 56-96 (332)
328 COG4088 Predicted nucleotide k 30.3 65 0.0014 29.0 3.6 36 7-43 3-38 (261)
329 cd00532 MGS-like MGS-like doma 30.0 2.5E+02 0.0054 22.2 6.8 84 18-134 10-104 (112)
330 PF01210 NAD_Gly3P_dh_N: NAD-d 29.6 39 0.00084 28.8 2.1 31 8-44 2-32 (157)
331 PRK10916 ADP-heptose:LPS hepto 29.5 2.7E+02 0.0059 27.2 8.4 97 269-393 179-286 (348)
332 PRK07313 phosphopantothenoylcy 29.4 71 0.0015 28.1 3.7 43 6-50 2-44 (182)
333 COG2086 FixA Electron transfer 29.2 4.7E+02 0.01 24.6 9.2 40 96-137 101-146 (260)
334 cd07035 TPP_PYR_POX_like Pyrim 29.1 1.4E+02 0.0031 25.0 5.6 26 370-395 62-93 (155)
335 cd01976 Nitrogenase_MoFe_alpha 28.9 66 0.0014 32.6 4.0 35 97-136 360-394 (421)
336 cd01424 MGS_CPS_II Methylglyox 28.8 2.9E+02 0.0062 21.6 7.4 84 17-134 10-100 (110)
337 PRK07525 sulfoacetaldehyde ace 28.7 2.9E+02 0.0063 29.4 9.0 28 367-394 68-101 (588)
338 PRK09620 hypothetical protein; 28.6 82 0.0018 28.9 4.2 37 6-43 4-52 (229)
339 PF07015 VirC1: VirC1 protein; 28.5 1.1E+02 0.0025 27.9 5.0 36 13-49 10-45 (231)
340 CHL00076 chlB photochlorophyll 28.3 87 0.0019 32.7 4.8 35 97-136 365-399 (513)
341 PLN02695 GDP-D-mannose-3',5'-e 28.1 1.1E+02 0.0023 30.4 5.3 36 2-42 18-53 (370)
342 TIGR01501 MthylAspMutase methy 28.1 1.2E+02 0.0025 25.3 4.6 48 6-54 2-49 (134)
343 cd01840 SGNH_hydrolase_yrhL_li 28.0 91 0.002 26.1 4.2 37 270-307 51-87 (150)
344 COG2894 MinD Septum formation 27.9 1.4E+02 0.0031 27.2 5.3 35 8-43 4-40 (272)
345 PLN02939 transferase, transfer 27.8 60 0.0013 36.3 3.6 39 5-44 481-525 (977)
346 cd01141 TroA_d Periplasmic bin 27.6 90 0.002 27.2 4.2 38 96-136 60-99 (186)
347 PRK02910 light-independent pro 27.5 95 0.0021 32.5 4.9 35 97-136 353-387 (519)
348 cd01122 GP4d_helicase GP4d_hel 27.4 1.2E+02 0.0025 28.4 5.2 45 6-51 31-76 (271)
349 cd02037 MRP-like MRP (Multiple 27.3 3.1E+02 0.0068 23.3 7.5 34 10-44 5-38 (169)
350 PF02571 CbiJ: Precorrin-6x re 27.3 1.8E+02 0.0038 27.1 6.1 104 22-136 118-226 (249)
351 cd01981 Pchlide_reductase_B Pc 27.2 1E+02 0.0022 31.4 5.0 35 97-136 361-395 (430)
352 PRK06522 2-dehydropantoate 2-r 27.2 58 0.0012 31.1 3.1 32 6-43 1-32 (304)
353 KOG1111 N-acetylglucosaminyltr 27.0 2.3E+02 0.005 27.9 6.8 96 23-136 22-121 (426)
354 PLN02929 NADH kinase 26.9 1.1E+02 0.0024 29.4 4.7 66 365-442 64-138 (301)
355 KOG0853 Glycosyltransferase [C 26.8 62 0.0013 33.3 3.2 60 373-443 376-435 (495)
356 PF14626 RNase_Zc3h12a_2: Zc3h 26.5 58 0.0013 26.2 2.3 29 19-48 9-37 (122)
357 PF09314 DUF1972: Domain of un 26.5 4.5E+02 0.0098 23.2 10.8 30 16-46 16-46 (185)
358 PRK01911 ppnK inorganic polyph 26.4 1.3E+02 0.0029 28.7 5.3 58 361-442 60-121 (292)
359 PRK04539 ppnK inorganic polyph 26.3 1.6E+02 0.0034 28.3 5.8 58 361-442 64-125 (296)
360 PRK03372 ppnK inorganic polyph 26.2 1.4E+02 0.0029 28.9 5.3 56 363-442 70-129 (306)
361 TIGR01278 DPOR_BchB light-inde 26.2 99 0.0021 32.3 4.8 35 97-136 355-389 (511)
362 COG2210 Peroxiredoxin family p 25.8 1.1E+02 0.0024 25.4 3.9 33 10-43 8-40 (137)
363 PRK04940 hypothetical protein; 25.8 1.4E+02 0.003 26.2 4.8 32 108-139 60-92 (180)
364 PF10093 DUF2331: Uncharacteri 25.7 1E+02 0.0022 30.6 4.3 37 8-44 3-39 (374)
365 COG0503 Apt Adenine/guanine ph 25.6 1.7E+02 0.0036 25.7 5.4 29 108-136 53-83 (179)
366 TIGR00730 conserved hypothetic 25.5 1.5E+02 0.0032 26.0 5.0 35 360-394 90-133 (178)
367 PRK07414 cob(I)yrinic acid a,c 25.5 4.6E+02 0.01 23.0 10.7 104 6-119 22-126 (178)
368 COG0003 ArsA Predicted ATPase 25.4 4.3E+02 0.0092 25.7 8.6 38 6-44 2-40 (322)
369 PF01497 Peripla_BP_2: Peripla 25.2 1.1E+02 0.0023 27.8 4.4 36 102-139 56-93 (238)
370 TIGR01005 eps_transp_fam exopo 25.0 5.8E+02 0.013 28.1 10.8 38 6-44 546-585 (754)
371 PRK01231 ppnK inorganic polyph 24.7 1.5E+02 0.0033 28.4 5.4 54 365-442 62-119 (295)
372 PF00551 Formyl_trans_N: Formy 24.7 4.6E+02 0.0099 22.8 8.1 104 287-438 67-172 (181)
373 PRK03378 ppnK inorganic polyph 24.6 1.3E+02 0.0029 28.7 4.9 58 361-442 59-120 (292)
374 PRK09219 xanthine phosphoribos 24.5 1.6E+02 0.0034 26.1 5.1 38 97-136 41-80 (189)
375 cd01965 Nitrogenase_MoFe_beta_ 24.4 1.1E+02 0.0025 30.9 4.8 34 97-135 362-395 (428)
376 PLN02240 UDP-glucose 4-epimera 24.2 1.2E+02 0.0026 29.5 4.9 37 1-42 1-37 (352)
377 PF07261 DnaB_2: Replication i 24.1 2.7E+02 0.006 19.9 5.7 58 429-491 15-72 (77)
378 PF00862 Sucrose_synth: Sucros 24.1 1.4E+02 0.003 30.8 5.0 121 16-137 296-432 (550)
379 PRK13768 GTPase; Provisional 24.0 3.4E+02 0.0074 25.2 7.5 36 8-44 5-40 (253)
380 PRK14619 NAD(P)H-dependent gly 23.9 1E+02 0.0022 29.7 4.1 34 4-43 3-36 (308)
381 COG2874 FlaH Predicted ATPases 23.9 1.8E+02 0.0038 26.5 5.1 96 13-122 36-137 (235)
382 COG2099 CobK Precorrin-6x redu 23.9 1.2E+02 0.0027 28.0 4.3 81 22-136 14-100 (257)
383 PRK11617 endonuclease V; Provi 23.7 63 0.0014 29.4 2.4 42 95-136 84-132 (224)
384 PF00731 AIRC: AIR carboxylase 23.6 4.6E+02 0.0099 22.3 9.4 139 272-460 2-148 (150)
385 cd07025 Peptidase_S66 LD-Carbo 23.6 1.8E+02 0.004 27.5 5.7 29 282-310 45-73 (282)
386 COG3349 Uncharacterized conser 23.6 81 0.0018 32.4 3.4 34 6-45 1-34 (485)
387 TIGR00639 PurN phosphoribosylg 23.6 5.2E+02 0.011 22.9 8.2 102 289-438 69-172 (190)
388 COG2205 KdpD Osmosensitive K+ 23.3 3.4E+02 0.0075 29.9 7.9 50 5-55 22-71 (890)
389 PF13450 NAD_binding_8: NAD(P) 23.3 97 0.0021 22.0 2.9 22 22-44 8-29 (68)
390 PF08766 DEK_C: DEK C terminal 23.2 2.4E+02 0.0052 18.9 5.9 34 427-462 1-34 (54)
391 PRK13604 luxD acyl transferase 23.2 1.6E+02 0.0036 28.3 5.2 36 5-41 36-71 (307)
392 TIGR02237 recomb_radB DNA repa 23.0 2.8E+02 0.006 24.6 6.6 37 7-44 14-50 (209)
393 PLN02470 acetolactate synthase 22.9 5.5E+02 0.012 27.3 9.8 31 11-43 81-111 (585)
394 cd03412 CbiK_N Anaerobic cobal 22.7 1.5E+02 0.0032 24.3 4.2 36 271-306 2-39 (127)
395 PRK06270 homoserine dehydrogen 22.7 4.4E+02 0.0096 25.8 8.4 58 358-416 80-149 (341)
396 PRK12921 2-dehydropantoate 2-r 22.7 71 0.0015 30.5 2.8 31 6-42 1-31 (305)
397 PRK08979 acetolactate synthase 22.4 6.1E+02 0.013 26.8 10.0 36 6-44 68-103 (572)
398 TIGR02302 aProt_lowcomp conser 22.4 2.8E+02 0.0061 30.9 7.4 57 426-483 474-536 (851)
399 COG0299 PurN Folate-dependent 22.2 1.5E+02 0.0033 26.3 4.4 30 108-137 29-58 (200)
400 TIGR01285 nifN nitrogenase mol 22.2 1.4E+02 0.0031 30.3 5.0 34 97-135 364-397 (432)
401 TIGR00173 menD 2-succinyl-5-en 22.1 1.4E+02 0.0029 30.5 4.8 26 368-393 64-95 (432)
402 KOG0780 Signal recognition par 22.1 3.7E+02 0.0079 26.9 7.2 46 6-52 102-147 (483)
403 PRK00039 ruvC Holliday junctio 21.6 2.6E+02 0.0056 24.1 5.7 46 91-138 46-106 (164)
404 PF00070 Pyr_redox: Pyridine n 21.5 1.3E+02 0.0028 22.0 3.4 24 20-44 9-32 (80)
405 PRK10353 3-methyl-adenine DNA 21.5 2.5E+02 0.0054 24.9 5.6 52 392-443 22-84 (187)
406 COG2099 CobK Precorrin-6x redu 21.4 2.5E+02 0.0053 26.2 5.7 41 94-136 184-229 (257)
407 PRK08199 thiamine pyrophosphat 21.3 3.4E+02 0.0074 28.6 7.8 27 368-394 72-104 (557)
408 PF05693 Glycogen_syn: Glycoge 21.3 1.8E+02 0.0038 30.9 5.3 91 358-457 462-565 (633)
409 COG3195 Uncharacterized protei 21.3 3.1E+02 0.0068 23.6 5.8 53 399-457 110-162 (176)
410 PRK04885 ppnK inorganic polyph 21.0 79 0.0017 29.7 2.6 54 365-442 35-94 (265)
411 PF09001 DUF1890: Domain of un 20.9 85 0.0018 26.0 2.4 25 19-44 13-37 (139)
412 cd00861 ProRS_anticodon_short 20.8 1.7E+02 0.0038 21.8 4.2 35 6-41 2-38 (94)
413 PRK10867 signal recognition pa 20.8 4.6E+02 0.0099 26.7 8.1 44 6-49 101-144 (433)
414 cd01147 HemV-2 Metal binding p 20.7 1.5E+02 0.0032 27.4 4.4 38 97-137 66-106 (262)
415 PRK11199 tyrA bifunctional cho 20.7 7.9E+02 0.017 24.4 9.8 32 6-43 99-131 (374)
416 cd01985 ETF The electron trans 20.6 5.6E+02 0.012 22.1 9.6 39 96-136 81-122 (181)
417 PRK06276 acetolactate synthase 20.6 1.8E+02 0.0038 31.1 5.4 26 369-394 65-96 (586)
418 COG1090 Predicted nucleoside-d 20.5 7.4E+02 0.016 23.6 9.8 21 23-44 12-32 (297)
419 TIGR00421 ubiX_pad polyprenyl 20.5 1.1E+02 0.0024 26.9 3.3 38 8-47 2-39 (181)
420 PRK14092 2-amino-4-hydroxy-6-h 20.5 2.3E+02 0.005 24.4 5.1 31 269-299 6-36 (163)
421 PRK12723 flagellar biosynthesi 20.5 6.2E+02 0.014 25.3 8.9 45 6-51 175-223 (388)
422 PLN02742 Probable galacturonos 20.4 82 0.0018 32.6 2.7 106 370-491 56-171 (534)
423 PLN02935 Bifunctional NADH kin 20.4 1.8E+02 0.0038 30.1 5.0 55 364-442 261-319 (508)
424 PRK05920 aromatic acid decarbo 20.2 1.5E+02 0.0033 26.6 4.1 42 6-49 4-45 (204)
425 cd02034 CooC The accessory pro 20.1 2.3E+02 0.0051 22.6 4.9 37 7-44 1-37 (116)
426 TIGR02990 ectoine_eutA ectoine 20.1 4.7E+02 0.01 24.1 7.4 103 19-136 105-213 (239)
427 PRK06546 pyruvate dehydrogenas 20.0 7.4E+02 0.016 26.3 10.0 60 370-440 458-518 (578)
428 PRK05114 hypothetical protein; 20.0 3.1E+02 0.0067 18.9 4.7 35 447-485 13-47 (59)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.5e-72 Score=562.14 Aligned_cols=465 Identities=56% Similarity=0.999 Sum_probs=358.8
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCC-
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVC- 78 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~- 78 (493)
|-.+++||+++|+|++||++|++.||+.|+ ++ |++|||++++.+..++.+.... . .++++..+|.+..++. +
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~~-g~~vT~v~t~~n~~~~~~~~~~-~---~~i~~~~lp~p~~~gl-p~ 74 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSANH-GFHVTVFVLETDAASAQSKFLN-S---TGVDIVGLPSPDISGL-VD 74 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhCC-CcEEEEEeCCCchhhhhhcccc-C---CCceEEECCCccccCC-CC
Confidence 667789999999999999999999999998 78 9999999999765443332221 1 2588999987655443 3
Q ss_pred CCcchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhh
Q 011099 79 TDASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQ 158 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (493)
.+......+........+.+.++++++..+|+|||+|.++.|+..+|+++|||++.|+++++..++.+.++|.+.... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~-~ 153 (481)
T PLN02992 75 PSAHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDI-K 153 (481)
T ss_pred CCccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccc-c
Confidence 333333344445556677888888876447899999999999999999999999999999998887776665432221 1
Q ss_pred hhcccCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCC
Q 011099 159 EEHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAP 238 (493)
Q Consensus 159 ~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~ 238 (493)
.+.....+++.+|+++++...+++..+.......+..+.+......+++++++|||++||+.+++.++.....++...++
T Consensus 154 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~ 233 (481)
T PLN02992 154 EEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVP 233 (481)
T ss_pred cccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCc
Confidence 11111123456889888888888764444444445566666666778999999999999999998886521222211256
Q ss_pred eEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccc
Q 011099 239 VYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSY 318 (493)
Q Consensus 239 ~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 318 (493)
++.|||+........ .+.+|.+||+++++++||||||||+..++.+++++++.+|+.++++|||+++.+.......++
T Consensus 234 v~~VGPl~~~~~~~~--~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~ 311 (481)
T PLN02992 234 VYPIGPLCRPIQSSK--TDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAY 311 (481)
T ss_pred eEEecCccCCcCCCc--chHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccccc
Confidence 999999976421111 345799999999889999999999999999999999999999999999999753210000001
Q ss_pred cccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchh
Q 011099 319 LTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAE 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~D 398 (493)
++....+. .+... ..+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 312 ~~~~~~~~--~~~~~--~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~D 387 (481)
T PLN02992 312 FSANGGET--RDNTP--EYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAE 387 (481)
T ss_pred ccCccccc--ccchh--hhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccch
Confidence 11000000 00000 358999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHH
Q 011099 399 QKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALI--NGGSSYNSLSKIA 476 (493)
Q Consensus 399 Q~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~--~~g~~~~~~~~~~ 476 (493)
|+.||+++++++|+|+.++ .. +..++.++|+++|+++|.++.++++|++++++++.+++|+. +||||++++++|+
T Consensus 388 Q~~na~~~~~~~g~gv~~~-~~--~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v 464 (481)
T PLN02992 388 QNMNAALLSDELGIAVRSD-DP--KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVT 464 (481)
T ss_pred hHHHHHHHHHHhCeeEEec-CC--CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 9999999866999999986 11 14589999999999999988888899999999999999995 5999999999999
Q ss_pred HHHHh
Q 011099 477 HECEN 481 (493)
Q Consensus 477 ~~~~~ 481 (493)
++++.
T Consensus 465 ~~~~~ 469 (481)
T PLN02992 465 KECQR 469 (481)
T ss_pred HHHHH
Confidence 99974
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.1e-70 Score=540.83 Aligned_cols=460 Identities=48% Similarity=0.850 Sum_probs=351.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhh-hhhccCCCCCCCeEEEEcCCCCCCCCCCCCcch
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQ-LSKLVNSPDYDILDIVLLPCIDISGIVCTDASL 83 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 83 (493)
+.||+++|+|++||++|++.||+.|+.+.|..|||+++........ +..........++++..+|....++..+.+...
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 4699999999999999999999999954279999998886443321 111111110125999999865543320222234
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCe-EEEEecchHHHHHHHhhhcchhhhhhhhhcc
Q 011099 84 VTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEML-KYMFIASNAWFVAVTIYAPALDKKVLQEEHV 162 (493)
Q Consensus 84 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP-~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (493)
...+...+....+.+.++++++..+++|||+|.+++|+..+|+++||| .+.|+++++...+.+.++|...... ..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~-~~~~~ 161 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV-EGEYV 161 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc-ccccC
Confidence 345566667778889999987745789999999999999999999999 5777888887777777766543221 12111
Q ss_pred cCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCCeEEe
Q 011099 163 NQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAPVYPV 242 (493)
Q Consensus 163 ~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~~~~v 242 (493)
...+++.+||++++...+++..+.......+..+.+......+++++++|||++||+..++.++....+++...++++.|
T Consensus 162 ~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~V 241 (470)
T PLN03015 162 DIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPI 241 (470)
T ss_pred CCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEe
Confidence 11234568999989988888655444333345555666667889999999999999999988876210111012569999
Q ss_pred ccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCC-cccccccc
Q 011099 243 GPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHD-VFDSYLTA 321 (493)
Q Consensus 243 Gp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~-~~~~~~~~ 321 (493)
||+........ .+.+|.+||+++++++||||||||...++.+++.+++.+|+.++++|||+++.+.... .+.+ +
T Consensus 242 GPl~~~~~~~~--~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~--~- 316 (470)
T PLN03015 242 GPIVRTNVHVE--KRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSS--D- 316 (470)
T ss_pred cCCCCCccccc--chHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccc--c-
Confidence 99985321111 3457999999999999999999999999999999999999999999999997532100 0000 0
Q ss_pred CCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcch
Q 011099 322 GSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKM 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~ 401 (493)
... . ...+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.
T Consensus 317 -~~~-------~-~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~ 387 (470)
T PLN03015 317 -DDQ-------V-SASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWM 387 (470)
T ss_pred -ccc-------h-hhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHH
Confidence 000 0 0468999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011099 402 NATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAE--KQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHEC 479 (493)
Q Consensus 402 na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 479 (493)
||+++++.+|+|+++.+.+. ...+++++|+++|+++|.+ ++|+++|+||++|++++++|+++||||++++++|++++
T Consensus 388 na~~~~~~~gvg~~~~~~~~-~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 388 NATLLTEEIGVAVRTSELPS-EKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHHHHhCeeEEeccccc-CCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 99999889999999841111 2468999999999999963 56889999999999999999999999999999999987
Q ss_pred H
Q 011099 480 E 480 (493)
Q Consensus 480 ~ 480 (493)
+
T Consensus 467 ~ 467 (470)
T PLN03015 467 Y 467 (470)
T ss_pred c
Confidence 4
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.9e-69 Score=537.70 Aligned_cols=440 Identities=29% Similarity=0.474 Sum_probs=335.2
Q ss_pred CCCC--CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCC
Q 011099 1 MEIR--KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVC 78 (493)
Q Consensus 1 m~~~--~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 78 (493)
|+++ ++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+... . .... .++++..+|..-.++. .
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~--~--~~~~---~~i~~~~ip~glp~~~-~ 71 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFS--P--SDDF---TDFQFVTIPESLPESD-F 71 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccc--c--ccCC---CCeEEEeCCCCCCccc-c
Confidence 7765 5899999999999999999999999999 999999999965321 1 1111 2588888874111111 0
Q ss_pred CCcchHHHHHHHHHHhhHHHHHHHHhc----CCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhh
Q 011099 79 TDASLVTQIAVMMHESIPALRSTISAM----KYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDK 154 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 154 (493)
........+........+.+.++++++ ..+++|||+|.+..|+..+|+++|||.+.|+++++..++.+.+++.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 151 (451)
T PLN02410 72 KNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYA 151 (451)
T ss_pred cccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHh
Confidence 111222333334445556677777664 2357999999999999999999999999999999988877665443322
Q ss_pred hhhhhhccc--CCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhc
Q 011099 155 KVLQEEHVN--QKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLR 232 (493)
Q Consensus 155 ~~~~~~~~~--~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 232 (493)
......+.. ......+|+++++...+++.............+.. .....+++++++|||++||+.+++.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~---- 226 (451)
T PLN02410 152 NNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQ---- 226 (451)
T ss_pred ccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhc----
Confidence 110000011 11223578888777777765433222222222222 22346788999999999999999888763
Q ss_pred cCCCCCeEEeccccCCCC-CCC-CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 011099 233 RVAKAPVYPVGPLARSVA-SSP-VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPL 310 (493)
Q Consensus 233 ~~~~p~~~~vGp~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 310 (493)
..+++++|||++.... ... ++...+|.+||+++++++||||||||....+.+++.+++.+|+.++++|||+++.+.
T Consensus 227 --~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~ 304 (451)
T PLN02410 227 --LQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGS 304 (451)
T ss_pred --cCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 1247999999975421 111 112346889999999999999999999999999999999999999999999998532
Q ss_pred CCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCce
Q 011099 311 DHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPM 390 (493)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~ 390 (493)
..+ . + .. ..+|++|.++++++++++ +|+||.+||+|+++++|||||||||++||+++||||
T Consensus 305 ~~~-----------~----~-~~--~~lp~~f~er~~~~g~v~-~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~ 365 (451)
T PLN02410 305 VRG-----------S----E-WI--ESLPKEFSKIISGRGYIV-KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPM 365 (451)
T ss_pred ccc-----------c----c-hh--hcCChhHHHhccCCeEEE-ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCE
Confidence 100 0 0 00 348999999998867665 999999999999999999999999999999999999
Q ss_pred eecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHH
Q 011099 391 IVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYN 470 (493)
Q Consensus 391 l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~ 470 (493)
|++|+++||+.||+++++.+|+|+.++ ..+++++|+++|+++|.++++++||++|++|++.+++|+++||+|+.
T Consensus 366 l~~P~~~DQ~~na~~~~~~~~~G~~~~------~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~ 439 (451)
T PLN02410 366 ICKPFSSDQKVNARYLECVWKIGIQVE------GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHN 439 (451)
T ss_pred EeccccccCHHHHHHHHHHhCeeEEeC------CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999976779999985 56899999999999998877889999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 011099 471 SLSKIAHECEN 481 (493)
Q Consensus 471 ~~~~~~~~~~~ 481 (493)
++++|+++++.
T Consensus 440 ~l~~fv~~~~~ 450 (451)
T PLN02410 440 SLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHHh
Confidence 99999999873
No 4
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=7.7e-69 Score=542.47 Aligned_cols=459 Identities=36% Similarity=0.588 Sum_probs=349.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCC----ceEEEEEcCCCCc----hhhhhhccCCCCCCCeEEEEcCCCCCCCC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNN----HHATIFVVANDTS----SEQLSKLVNSPDYDILDIVLLPCIDISGI 76 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~G----h~Vt~~~~~~~~~----~v~~~~~~~~~~~~~i~~~~l~~~~~~~~ 76 (493)
|.||+|+|+|++||++|++.||+.|+.+ | +.|||+++..+.. .+............++++..+|....
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~--- 78 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEP--- 78 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCC---
Confidence 4699999999999999999999999999 6 7999999886532 22222111111112589999986432
Q ss_pred CCCCc-chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhh
Q 011099 77 VCTDA-SLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKK 155 (493)
Q Consensus 77 ~~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 155 (493)
+.+. +....+........+.+.++++.+..+++|||+|.++.|+..+|+++|||.+.|+++++..++.+.+++.....
T Consensus 79 -p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 157 (480)
T PLN00164 79 -PTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEE 157 (480)
T ss_pred -CCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccc
Confidence 2221 22233444556667778888877533569999999999999999999999999999999998888876653322
Q ss_pred hhhhhcccCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCC
Q 011099 156 VLQEEHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVA 235 (493)
Q Consensus 156 ~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 235 (493)
. ..++.....++.+||++.+...+++..+.......+..+....+...+++++++|||++||+.++..++.........
T Consensus 158 ~-~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 236 (480)
T PLN00164 158 V-AVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRP 236 (480)
T ss_pred c-cCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCC
Confidence 1 111111113445889988888888866544433334444445555678899999999999999998887641111101
Q ss_pred CCCeEEeccccCCC-CCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCc
Q 011099 236 KAPVYPVGPLARSV-ASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDV 314 (493)
Q Consensus 236 ~p~~~~vGp~~~~~-~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 314 (493)
.|+++.|||+.... .......+++|.+||+++++++||||||||+...+.+++.+++.+|+.++++|||+++.+.....
T Consensus 237 ~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~ 316 (480)
T PLN00164 237 APTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGS 316 (480)
T ss_pred CCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCccccc
Confidence 35799999997431 11111145679999999999999999999999999999999999999999999999985421000
Q ss_pred cccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecc
Q 011099 315 FDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWP 394 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P 394 (493)
.+..+.+ .. ..+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 317 ----~~~~~~~------~~--~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 317 ----RHPTDAD------LD--ELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred ----ccccccc------hh--hhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 0000000 00 35899999999999999989999999999999999999999999999999999999999
Q ss_pred cchhcchhhHhhhhheeeeEEeeccCCC-CCccchHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 011099 395 LYAEQKMNATMLTEELRVAIRSKEVPSE-KSVVERGEIEMMVRRIVAEK--QGHAIRNRVEELKHSAQKALINGGSSYNS 471 (493)
Q Consensus 395 ~~~DQ~~na~~v~e~~Gvg~~~~~~~~~-~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~a~~~~g~~~~~ 471 (493)
+++||+.||+++++++|+|+.+. .+.+ .+.+++++|+++|+++|.++ +++++|++|+++++.+++|+.+||||+++
T Consensus 385 ~~~DQ~~Na~~~~~~~gvG~~~~-~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~ 463 (480)
T PLN00164 385 LYAEQHLNAFELVADMGVAVAMK-VDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAA 463 (480)
T ss_pred ccccchhHHHHHHHHhCeEEEec-cccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999998867899999985 2110 13479999999999999874 47889999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 011099 472 LSKIAHECENS 482 (493)
Q Consensus 472 ~~~~~~~~~~~ 482 (493)
+++|+++++.+
T Consensus 464 l~~~v~~~~~~ 474 (480)
T PLN00164 464 LQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHhc
Confidence 99999999854
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.7e-69 Score=533.86 Aligned_cols=427 Identities=26% Similarity=0.434 Sum_probs=335.7
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCC-CCCC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISG-IVCT 79 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~ 79 (493)
|++++.||+++|+|++||++|++.||+.|+.+ |+.|||++++.+...+... . ..++++..++. ..+. ....
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~~~~~~----~--~~~i~~~~ipd-glp~~~~~~ 72 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFNTIHLD----P--SSPISIATISD-GYDQGGFSS 72 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhhhcccC----C--CCCEEEEEcCC-CCCCccccc
Confidence 88999999999999999999999999999999 9999999999754433211 1 12589998874 1211 1011
Q ss_pred CcchHHHHHHHHHHhhHHHHHHHHhc--CCCC-cEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhh
Q 011099 80 DASLVTQIAVMMHESIPALRSTISAM--KYRP-TALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKV 156 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~-DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 156 (493)
..+....+........+.+.++++.+ ..+| +|||+|.+.+|+..+|+++|||.+.|++++++.+..+.+ +.. .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~-- 148 (449)
T PLN02173 73 AGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-N-- 148 (449)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-c--
Confidence 11233333344446677888888765 2245 999999999999999999999999999988877655432 111 0
Q ss_pred hhhhcccCCCcccCCCCCCCCcccccccccCC--CCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccC
Q 011099 157 LQEEHVNQKKPLKIPGCSAVRFEDTLEAFLDP--YGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRV 234 (493)
Q Consensus 157 ~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~ 234 (493)
. ....+.+|+++++...+++..+... .......+.+......+++++++|||++||+.++..++.
T Consensus 149 --~----~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~------- 215 (449)
T PLN02173 149 --N----GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK------- 215 (449)
T ss_pred --c----CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-------
Confidence 0 0123457888888888887655432 222344455556667889999999999999998887754
Q ss_pred CCCCeEEeccccCCC-------CCCC-----C--cccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCC
Q 011099 235 AKAPVYPVGPLARSV-------ASSP-----V--SGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQ 300 (493)
Q Consensus 235 ~~p~~~~vGp~~~~~-------~~~~-----~--~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 300 (493)
.++++.|||+.+.. .... + ..+++|.+||+.++++++|||||||+...+.+++.+++.+| .+.
T Consensus 216 -~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 216 -VCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred -cCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 24699999997420 0000 0 12345999999999999999999999999999999999999 788
Q ss_pred cEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHH
Q 011099 301 RFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNST 380 (493)
Q Consensus 301 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~ 380 (493)
+|||+++.+.. ..+|++|.+++++.|+++.+|+||.+||+|++|++|||||||||+
T Consensus 293 ~flWvvr~~~~------------------------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~ 348 (449)
T PLN02173 293 SYLWVVRASEE------------------------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNST 348 (449)
T ss_pred CEEEEEeccch------------------------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchH
Confidence 99999975321 458899999987667777799999999999999999999999999
Q ss_pred HHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 011099 381 MESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQK 460 (493)
Q Consensus 381 ~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 460 (493)
+||+++|||||++|+++||+.||+++++.+|+|+.+. .+..+..++.++|+++|+++|.+++++++|+||+++++++++
T Consensus 349 ~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~-~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~ 427 (449)
T PLN02173 349 MEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVK-AEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVK 427 (449)
T ss_pred HHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEe-ecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977779999885 222012479999999999999988889999999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHH
Q 011099 461 ALINGGSSYNSLSKIAHECE 480 (493)
Q Consensus 461 a~~~~g~~~~~~~~~~~~~~ 480 (493)
|+++||||++++++|+++++
T Consensus 428 Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 428 SLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HhcCCCcHHHHHHHHHHHhc
Confidence 99999999999999999985
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.4e-68 Score=533.41 Aligned_cols=445 Identities=29% Similarity=0.447 Sum_probs=341.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcc-
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDAS- 82 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~- 82 (493)
.++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+..++.... ... .++++..++.+..... +.+.+
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~~~~~~~-~~~---~~i~~~~lp~P~~~~l-PdG~~~ 81 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLPFLNPLL-SKH---PSIETLVLPFPSHPSI-PSGVEN 81 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHhhhc-ccC---CCeeEEeCCCCCcCCC-CCCCcC
Confidence 36999999999999999999999999999 99999999998765543321 111 2588888776544332 33321
Q ss_pred -------hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhh
Q 011099 83 -------LVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKK 155 (493)
Q Consensus 83 -------~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 155 (493)
....+........+.+.+++++...+++|||+|.+..|+..+|+++|||++.|++++++.++.+.+++.....
T Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~ 161 (477)
T PLN02863 82 VKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPT 161 (477)
T ss_pred hhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccc
Confidence 1122334444556667777766434679999999999999999999999999999999998887775421100
Q ss_pred hhhhhcccCCCc---ccCCCCCCCCcccccccccC--CCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhh
Q 011099 156 VLQEEHVNQKKP---LKIPGCSAVRFEDTLEAFLD--PYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNM 230 (493)
Q Consensus 156 ~~~~~~~~~~~~---~~~p~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 230 (493)
. .......+. ..+||++.+...+++..+.. ........+.+.......++++++|||++||+.+++.++..
T Consensus 162 ~--~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-- 237 (477)
T PLN02863 162 K--INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE-- 237 (477)
T ss_pred c--ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh--
Confidence 0 000011111 24788888888888765532 22233334444444455678899999999999999888763
Q ss_pred hccCCCCCeEEeccccCCCC-C----C--C--CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCc
Q 011099 231 LRRVAKAPVYPVGPLARSVA-S----S--P--VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQR 301 (493)
Q Consensus 231 ~~~~~~p~~~~vGp~~~~~~-~----~--~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 301 (493)
++ .++++.|||+.+... . . . ...+++|.+||+.+++++||||||||+...+.+++.+++++|+.++++
T Consensus 238 ~~---~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~ 314 (477)
T PLN02863 238 LG---HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVH 314 (477)
T ss_pred cC---CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCc
Confidence 11 257999999975321 0 0 0 002357999999998899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHH
Q 011099 302 FIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTM 381 (493)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~ 381 (493)
|||+++.+.... . .. ..+|++|.++++++|+++.+|+||.+||+|++|++|||||||||++
T Consensus 315 flw~~~~~~~~~-----------~------~~--~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~ 375 (477)
T PLN02863 315 FIWCVKEPVNEE-----------S------DY--SNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVL 375 (477)
T ss_pred EEEEECCCcccc-----------c------ch--hhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHH
Confidence 999997542100 0 00 4689999999998899988999999999999999999999999999
Q ss_pred HHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 011099 382 ESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKA 461 (493)
Q Consensus 382 eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a 461 (493)
||+++|||||++|+++||+.||+++++++|+|+++.+ +. ...++.+++.++|+++|.+ +++||+||+++++.+++|
T Consensus 376 Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~-~~-~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~A 451 (477)
T PLN02863 376 EGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCE-GA-DTVPDSDELARVFMESVSE--NQVERERAKELRRAALDA 451 (477)
T ss_pred HHHHcCCCEEeCCccccchhhHHHHHHhhceeEEecc-CC-CCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998778999999842 11 1346899999999999942 345999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHhcch
Q 011099 462 LINGGSSYNSLSKIAHECENSLQ 484 (493)
Q Consensus 462 ~~~~g~~~~~~~~~~~~~~~~~~ 484 (493)
+++||+|+.++++|+++++..+.
T Consensus 452 v~~gGSS~~~l~~~v~~i~~~~~ 474 (477)
T PLN02863 452 IKERGSSVKDLDGFVKHVVELGL 474 (477)
T ss_pred hccCCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987553
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.9e-67 Score=526.11 Aligned_cols=443 Identities=31% Similarity=0.568 Sum_probs=336.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCC--ceEEEEEcCCCC-chhhhhhccCC-CCCCCeEEEEcCCCCC-CCCCCC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNN--HHATIFVVANDT-SSEQLSKLVNS-PDYDILDIVLLPCIDI-SGIVCT 79 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~G--h~Vt~~~~~~~~-~~v~~~~~~~~-~~~~~i~~~~l~~~~~-~~~~~~ 79 (493)
+.||+|+|+|++||++|++.||+.|+.+ | ..|||++++.+. ..+ +..+... ....+++|..+|.... ... ..
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~-~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~~ 79 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHL-DTYVKSIASSQPFVRFIDVPELEEKPTL-GG 79 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhh-HHhhhhccCCCCCeEEEEeCCCCCCCcc-cc
Confidence 4799999999999999999999999999 8 999999999754 222 1111110 1012699999995322 110 11
Q ss_pred CcchHHHHHHHHHHhhH----HHHHHHHhcC---CCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcch
Q 011099 80 DASLVTQIAVMMHESIP----ALRSTISAMK---YRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPAL 152 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~----~l~~ll~~~~---~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~ 152 (493)
..+....+...+....+ .+.+++++.. .+++|||+|.++.|+..+|+++|||.+.|+++++..++.+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 12333344444444433 4455555431 2348999999999999999999999999999999988888776643
Q ss_pred hhhhhhhh-cccCCCcccCCCC-CCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhh
Q 011099 153 DKKVLQEE-HVNQKKPLKIPGC-SAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNM 230 (493)
Q Consensus 153 ~~~~~~~~-~~~~~~~~~~p~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 230 (493)
.... ... .......+.+||+ +++...+++..+.... . +..+.+......+++++++||++++|.+++..++..
T Consensus 160 ~~~~-~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~-- 234 (468)
T PLN02207 160 HSKD-TSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE-- 234 (468)
T ss_pred cccc-cccCcCCCCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc--
Confidence 2211 000 0011133568998 5788888886553222 2 444555555678899999999999999988877541
Q ss_pred hccCCCCCeEEeccccCCCCCC-C---CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 011099 231 LRRVAKAPVYPVGPLARSVASS-P---VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVV 306 (493)
Q Consensus 231 ~~~~~~p~~~~vGp~~~~~~~~-~---~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 306 (493)
+..|+++.|||++...... . ...+++|.+||+++++++||||||||....+.+++++++.+|+.++++|||++
T Consensus 235 ---~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 311 (468)
T PLN02207 235 ---QNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSL 311 (468)
T ss_pred ---cCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEE
Confidence 1356799999998642110 0 00225799999999889999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHh
Q 011099 307 RPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVN 386 (493)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~ 386 (493)
+.+.... . ..+|++|.++++++++++ +|+||.+||+|+++++|||||||||++||+++
T Consensus 312 r~~~~~~-----------~----------~~lp~~f~er~~~~g~i~-~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~ 369 (468)
T PLN02207 312 RTEEVTN-----------D----------DLLPEGFLDRVSGRGMIC-GWSPQVEILAHKAVGGFVSHCGWNSIVESLWF 369 (468)
T ss_pred eCCCccc-----------c----------ccCCHHHHhhcCCCeEEE-EeCCHHHHhcccccceeeecCccccHHHHHHc
Confidence 8532100 1 578999999988766554 99999999999999999999999999999999
Q ss_pred CCceeecccchhcchhhHhhhhheeeeEEeec---cCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Q 011099 387 GVPMIVWPLYAEQKMNATMLTEELRVAIRSKE---VPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALI 463 (493)
Q Consensus 387 GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~---~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~ 463 (493)
|||||++|+++||+.||+++++++|+|+.+.. ++. .+.++.++|+++|+++|.+ ++++||+||+++++.+++|+.
T Consensus 370 GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~-~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~ 447 (468)
T PLN02207 370 GVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHS-DEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATK 447 (468)
T ss_pred CCCEEecCccccchhhHHHHHHHhCceEEEeccccccc-CCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998767999998741 111 1346999999999999973 356799999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhc
Q 011099 464 NGGSSYNSLSKIAHECENS 482 (493)
Q Consensus 464 ~~g~~~~~~~~~~~~~~~~ 482 (493)
+||||+.++++|+++++..
T Consensus 448 ~GGSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 448 NGGSSFAAIEKFIHDVIGI 466 (468)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999863
No 8
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.7e-67 Score=528.89 Aligned_cols=451 Identities=24% Similarity=0.406 Sum_probs=340.3
Q ss_pred CCCC--CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhh--hhccC--CCC-CCCeEEEEcCCCCC
Q 011099 1 MEIR--KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQL--SKLVN--SPD-YDILDIVLLPCIDI 73 (493)
Q Consensus 1 m~~~--~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~--~~~~~--~~~-~~~i~~~~l~~~~~ 73 (493)
|+.. +.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+.. ..... .+. ...+.|..++. ..
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd-gl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED-GW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC-CC
Confidence 5543 6999999999999999999999999999 999999999975554432 11010 000 01255555543 11
Q ss_pred CCCCCCCcchHHHHHHHHHHhhHHHHHHHHhc--CCC-CcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhc
Q 011099 74 SGIVCTDASLVTQIAVMMHESIPALRSTISAM--KYR-PTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAP 150 (493)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~-~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p 150 (493)
+.......+....+........+.+.++++.+ ..+ ++|||+|.++.|+..+|+++|||.++|++++++.++.+.+++
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 11101111233333334445666778888765 124 499999999999999999999999999999999888877664
Q ss_pred chhhhhhhhhcccCCCcccCCCCCCCCcccccccccC--CCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhh
Q 011099 151 ALDKKVLQEEHVNQKKPLKIPGCSAVRFEDTLEAFLD--PYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDF 228 (493)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 228 (493)
...... +. ......++.+|++|.+...+++..+.. .....+..+.+......+++++++|||++||+.++..++..
T Consensus 159 ~~~~~~-~~-~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~ 236 (480)
T PLN02555 159 HGLVPF-PT-ETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL 236 (480)
T ss_pred hcCCCc-cc-ccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC
Confidence 211001 10 000112356899988888888865542 12233444555666677889999999999999988877652
Q ss_pred hhhccCCCCCeEEeccccCCCC---CC--C--CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCc
Q 011099 229 NMLRRVAKAPVYPVGPLARSVA---SS--P--VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQR 301 (493)
Q Consensus 229 ~~~~~~~~p~~~~vGp~~~~~~---~~--~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 301 (493)
. +++.|||+..... .. . +..+++|.+||+++++++||||||||+...+.+++.+++.+|+.++++
T Consensus 237 -------~-~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~ 308 (480)
T PLN02555 237 -------C-PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVS 308 (480)
T ss_pred -------C-CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCe
Confidence 3 4999999975321 10 0 123567999999998889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHH
Q 011099 302 FIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTM 381 (493)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~ 381 (493)
|||+++...... + .....+|++|.+++++++ .+.+|+||.+||.|++|++|||||||||++
T Consensus 309 flW~~~~~~~~~-----------~-------~~~~~lp~~~~~~~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 369 (480)
T PLN02555 309 FLWVMRPPHKDS-----------G-------VEPHVLPEEFLEKAGDKG-KIVQWCPQEKVLAHPSVACFVTHCGWNSTM 369 (480)
T ss_pred EEEEEecCcccc-----------c-------chhhcCChhhhhhcCCce-EEEecCCHHHHhCCCccCeEEecCCcchHH
Confidence 999997431100 0 000468899988887655 445999999999999999999999999999
Q ss_pred HHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 011099 382 ESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKA 461 (493)
Q Consensus 382 eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a 461 (493)
||+++|||||++|+++||+.||+++++.+|+|+++.+...+...++.++|.++|+++|.+++++++|+||++|++.+++|
T Consensus 370 Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A 449 (480)
T PLN02555 370 EALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAA 449 (480)
T ss_pred HHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998778999998421100246899999999999998888899999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHhc
Q 011099 462 LINGGSSYNSLSKIAHECENS 482 (493)
Q Consensus 462 ~~~~g~~~~~~~~~~~~~~~~ 482 (493)
+++||||++++++||++++.+
T Consensus 450 ~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 450 VAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred hcCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999865
No 9
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.3e-67 Score=526.59 Aligned_cols=446 Identities=29% Similarity=0.455 Sum_probs=334.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCC-CCCCCCc--
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDIS-GIVCTDA-- 81 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~-~~~~~~~-- 81 (493)
++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+...+..........+..++|+.++.+..+ ++ +.+.
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dgl-p~~~~~ 85 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGL-PIGCEN 85 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCC-CCCccc
Confidence 4899999999999999999999999999 99999999997654443322111111124899999854322 22 3221
Q ss_pred -------chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhh
Q 011099 82 -------SLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDK 154 (493)
Q Consensus 82 -------~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 154 (493)
.+...+...+....+.+.++++....+++|||+|.++.|+..+|+++|||.+.|++++++..+.+.++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 1222333344445567777776543468999999999999999999999999999999887765433211100
Q ss_pred hhhhhhcccCCCcccCCCCCC---CCcccccccccCCCCcchHHHHHHhhh-ccCccEEEEcChhhhhHHHHHHHHhhhh
Q 011099 155 KVLQEEHVNQKKPLKIPGCSA---VRFEDTLEAFLDPYGPMYDGFLQVGMD-MSKADGILVNTWEDLESKTLAALRDFNM 230 (493)
Q Consensus 155 ~~~~~~~~~~~~~~~~p~l~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 230 (493)
. ........++.+|++++ +...+++..+... ..+..+.+.... ...++++++|||++||+.++..++..
T Consensus 166 ~---~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~-- 238 (491)
T PLN02534 166 H---LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKA-- 238 (491)
T ss_pred c---ccCCCCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhh--
Confidence 0 00111123455778764 6666666543221 123334433332 24567999999999999999888763
Q ss_pred hccCCCCCeEEeccccCCCCC-------C-CCc-ccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCc
Q 011099 231 LRRVAKAPVYPVGPLARSVAS-------S-PVS-GSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQR 301 (493)
Q Consensus 231 ~~~~~~p~~~~vGp~~~~~~~-------~-~~~-~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 301 (493)
..++++.|||+...... . ... ..++|.+||+++++++||||||||....+++++.+++.+|+.++++
T Consensus 239 ----~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~ 314 (491)
T PLN02534 239 ----IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKP 314 (491)
T ss_pred ----cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCC
Confidence 12469999999753110 0 000 2346999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHH
Q 011099 302 FIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTM 381 (493)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~ 381 (493)
|||+++.+.... ... + ..+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++
T Consensus 315 flW~~r~~~~~~---------~~~----~-----~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ 376 (491)
T PLN02534 315 FIWVIKTGEKHS---------ELE----E-----WLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTI 376 (491)
T ss_pred EEEEEecCcccc---------chh----h-----hcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHH
Confidence 999998432100 000 0 2468999999888899988999999999999999999999999999
Q ss_pred HHHHhCCceeecccchhcchhhHhhhhheeeeEEeec-----cC-CCC-C-ccchHHHHHHHHHHhc--ccchHHHHHHH
Q 011099 382 ESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKE-----VP-SEK-S-VVERGEIEMMVRRIVA--EKQGHAIRNRV 451 (493)
Q Consensus 382 eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~-----~~-~~~-~-~~~~~~l~~ai~~vl~--~~~~~~~r~~a 451 (493)
||+++|||||++|+++||+.||+++++.+|+|+++.. .. .++ + .+++++|+++|+++|. +++++++|+||
T Consensus 377 ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA 456 (491)
T PLN02534 377 EGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRA 456 (491)
T ss_pred HHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHH
Confidence 9999999999999999999999999999999998741 00 000 1 3899999999999997 46688899999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 011099 452 EELKHSAQKALINGGSSYNSLSKIAHECEN 481 (493)
Q Consensus 452 ~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 481 (493)
++|++.+++|+.+||||++++++||++++.
T Consensus 457 ~elk~~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 457 QELGVMARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999984
No 10
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.3e-67 Score=523.99 Aligned_cols=441 Identities=34% Similarity=0.612 Sum_probs=329.1
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCC--ceEEE--EEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCC-CC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNN--HHATI--FVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDI-SG 75 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~G--h~Vt~--~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~-~~ 75 (493)
|++ .||+++|+|++||++|++.||+.|+.+ | +.||+ .++..+........-.......+++++.+|.... +.
T Consensus 1 ~~~--~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 77 (451)
T PLN03004 1 MGE--EAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSS 77 (451)
T ss_pred CCC--cEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCC
Confidence 455 499999999999999999999999999 8 55665 4444321111111001001112699999986432 12
Q ss_pred CCCCCcchHHHHHHHHHHhhHHHHHHHHhc-C-CCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchh
Q 011099 76 IVCTDASLVTQIAVMMHESIPALRSTISAM-K-YRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALD 153 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~-~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 153 (493)
......+....+........+.+.++++++ . .+++|||+|.+..|+..+|+++|||.+.|+++++..++.+.++|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~ 157 (451)
T PLN03004 78 SSTSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID 157 (451)
T ss_pred ccccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc
Confidence 101111222344445556777778888876 2 34599999999999999999999999999999999988887765432
Q ss_pred hhhhhhhcccCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhcc
Q 011099 154 KKVLQEEHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRR 233 (493)
Q Consensus 154 ~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~ 233 (493)
... +.........+.+||++.+...+++..+.......+..+.+......+++++++|||++||+.+++.+... .
T Consensus 158 ~~~-~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~--~-- 232 (451)
T PLN03004 158 ETT-PGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE--L-- 232 (451)
T ss_pred ccc-cccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc--C--
Confidence 211 11000111235688998888888887655443333455555556667788999999999999999888652 0
Q ss_pred CCCCCeEEeccccCCCCCC-CC-cccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 011099 234 VAKAPVYPVGPLARSVASS-PV-SGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLD 311 (493)
Q Consensus 234 ~~~p~~~~vGp~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 311 (493)
..++++.|||+....... .. ..+.+|.+||+++++++||||||||+..++.+++++++.+|+.++++|||+++.+..
T Consensus 233 -~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~ 311 (451)
T PLN03004 233 -CFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE 311 (451)
T ss_pred -CCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 024799999997532110 00 023469999999999999999999999999999999999999999999999985421
Q ss_pred CCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCcee
Q 011099 312 HDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMI 391 (493)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l 391 (493)
.. ..... . ...+|++|.++++++|+++.+|+||.+||+|+++++|||||||||+.||+++|||||
T Consensus 312 ~~-------~~~~~-------~-~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v 376 (451)
T PLN03004 312 LE-------KTELD-------L-KSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMV 376 (451)
T ss_pred cc-------ccccc-------h-hhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEE
Confidence 00 00000 0 034899999999999999889999999999999999999999999999999999999
Q ss_pred ecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHH
Q 011099 392 VWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYN 470 (493)
Q Consensus 392 ~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~ 470 (493)
++|+++||+.||+++++++|+|+.++ ... .+.+++++|+++|+++|.+++ ||++++++++.++.|+++||||++
T Consensus 377 ~~P~~~DQ~~na~~~~~~~g~g~~l~-~~~-~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 377 AWPLYAEQRFNRVMIVDEIKIAISMN-ESE-TGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred eccccccchhhHHHHHHHhCceEEec-CCc-CCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999965789999986 211 135799999999999998766 999999999999999999999853
No 11
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=7e-67 Score=524.44 Aligned_cols=433 Identities=23% Similarity=0.353 Sum_probs=331.8
Q ss_pred CCCC-CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCC
Q 011099 1 MEIR-KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCT 79 (493)
Q Consensus 1 m~~~-~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 79 (493)
|++. +.||+++|+|++||++|++.||+.|+.+ |++|||++++.+..++... .... .+++++.+|... +.. .
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~~~~~-~~~~---~~i~~v~lp~g~-~~~-~- 72 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRRISAT-LDPK---LGITFMSISDGQ-DDD-P- 72 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhhhc-cCCC---CCEEEEECCCCC-CCC-c-
Confidence 5554 4699999999999999999999999999 9999999999876554332 1111 268999887522 111 1
Q ss_pred CcchHHHHHHHHH-HhhHHHHHHHHhcC--CCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhh
Q 011099 80 DASLVTQIAVMMH-ESIPALRSTISAMK--YRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKV 156 (493)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~l~~ll~~~~--~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 156 (493)
..++. .+...+. ...+.+.++++++. .+++|||+|.+..|+..+|+++|||.+.|+++++..++.+.+.+......
T Consensus 73 ~~~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 73 PRDFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred cccHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 11222 2223333 46677888888762 24589999999999999999999999999999988888776655432211
Q ss_pred -hhhh-cccCCCc-ccCCCCCCCCcccccccccCC--CCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhh
Q 011099 157 -LQEE-HVNQKKP-LKIPGCSAVRFEDTLEAFLDP--YGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNML 231 (493)
Q Consensus 157 -~~~~-~~~~~~~-~~~p~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 231 (493)
.... .....++ ..+|+++.+...+++..+... ....+..+.+..+...+++++++|||++||+..+..+... .
T Consensus 152 ~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~ 229 (448)
T PLN02562 152 LISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQAS--Y 229 (448)
T ss_pred ccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhh--h
Confidence 0000 0001112 257888888888887655322 2223555566666677889999999999999888766542 1
Q ss_pred ccCCCCCeEEeccccCCCCC---CC--CcccccccccccCCCCCeEEEEEcCCCC-CCCHHHHHHHHHHHHhCCCcEEEE
Q 011099 232 RRVAKAPVYPVGPLARSVAS---SP--VSGSHVVLDWLDKQPHESVIYVSFGSGG-TLSSKQTMELAWGLEQSKQRFIWV 305 (493)
Q Consensus 232 ~~~~~p~~~~vGp~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~ 305 (493)
+||..|+++.|||++..... .. ...+.+|.+||++++++++|||||||+. ..+.+++++++.+|+.++++|||+
T Consensus 230 ~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~ 309 (448)
T PLN02562 230 NNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWV 309 (448)
T ss_pred ccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 23335679999999864311 00 0123467899999988899999999985 678999999999999999999999
Q ss_pred EcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHH
Q 011099 306 VRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIV 385 (493)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~ 385 (493)
++.+.. +.+|++|.++.++++ .+.+|+||.+||+|+++++|||||||||++||++
T Consensus 310 ~~~~~~------------------------~~l~~~~~~~~~~~~-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~ 364 (448)
T PLN02562 310 LNPVWR------------------------EGLPPGYVERVSKQG-KVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQ 364 (448)
T ss_pred EcCCch------------------------hhCCHHHHHHhccCE-EEEecCCHHHHhCCCccceEEecCcchhHHHHHH
Confidence 965321 468889988887644 4459999999999999999999999999999999
Q ss_pred hCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcC
Q 011099 386 NGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALING 465 (493)
Q Consensus 386 ~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~ 465 (493)
+|||||++|+++||+.||+++++.+|+|+.++ .++.++|+++|+++|.+++ ||+||++++++++++ .+|
T Consensus 365 ~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~-------~~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~g 433 (448)
T PLN02562 365 CQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS-------GFGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EAR 433 (448)
T ss_pred cCCCEEeCCcccchHHHHHHHHHHhCceeEeC-------CCCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCC
Confidence 99999999999999999999965689998863 4789999999999998876 999999999998886 567
Q ss_pred CChHHHHHHHHHHHH
Q 011099 466 GSSYNSLSKIAHECE 480 (493)
Q Consensus 466 g~~~~~~~~~~~~~~ 480 (493)
|||++++++|+++++
T Consensus 434 GSS~~nl~~~v~~~~ 448 (448)
T PLN02562 434 LRSMMNFTTLKDELK 448 (448)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999999874
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.2e-66 Score=523.09 Aligned_cols=429 Identities=25% Similarity=0.408 Sum_probs=327.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHH--HHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCC-
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKR--LVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTD- 80 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~--L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~- 80 (493)
.+.||+|+|+|++||++|++.||++ |++| |++|||++++.+.+.+..... .. ..+++..++. +. +.+
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~~~~~~~~-~~---~~~~~~~~~~----gl-p~~~ 76 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARDLLSTVEK-PR---RPVDLVFFSD----GL-PKDD 76 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhhhhccccC-CC---CceEEEECCC----CC-CCCc
Confidence 4689999999999999999999999 5699 999999999987554422111 11 2466665552 11 222
Q ss_pred -cchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhh
Q 011099 81 -ASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQE 159 (493)
Q Consensus 81 -~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (493)
.+....+........+.+.+++++. ++||||+|.++.|+..+|+++|||.+.|++.++..+..+.+++...... +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~-~~ 153 (456)
T PLN02210 77 PRAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSF-PD 153 (456)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCC-Cc
Confidence 1222333334445566777777765 7999999999999999999999999999999988877766543211111 11
Q ss_pred hcccCCCcccCCCCCCCCcccccccccCCCCcchHHHH-HHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCC
Q 011099 160 EHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFL-QVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAP 238 (493)
Q Consensus 160 ~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~ 238 (493)
..+......+|+++++...+++..+.......+.... +..+....++++++||++++|+.+++.++. .++
T Consensus 154 -~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--------~~~ 224 (456)
T PLN02210 154 -LEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD--------LKP 224 (456)
T ss_pred -ccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh--------cCC
Confidence 0011123457888877888877655443332233333 222345667899999999999998887765 247
Q ss_pred eEEeccccCC----CCCC---C------CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 011099 239 VYPVGPLARS----VASS---P------VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWV 305 (493)
Q Consensus 239 ~~~vGp~~~~----~~~~---~------~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 305 (493)
+++|||++.. .... . +..+.+|.+||+++++++||||||||....+.+++++++.+|+.++++|||+
T Consensus 225 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~ 304 (456)
T PLN02210 225 VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWV 304 (456)
T ss_pred EEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999742 1110 0 1134568999999988999999999998889999999999999999999999
Q ss_pred EcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhC-CCceeeccCCChhhhcCCCCcccccccCCchHHHHHH
Q 011099 306 VRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTR-DVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESI 384 (493)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal 384 (493)
++.... ...+++|.++.. +++++ .+|+||.+||+|++|++|||||||||++||+
T Consensus 305 ~~~~~~------------------------~~~~~~~~~~~~~~~g~v-~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai 359 (456)
T PLN02210 305 IRPKEK------------------------AQNVQVLQEMVKEGQGVV-LEWSPQEKILSHMAISCFVTHCGWNSTIETV 359 (456)
T ss_pred EeCCcc------------------------ccchhhHHhhccCCCeEE-EecCCHHHHhcCcCcCeEEeeCCcccHHHHH
Confidence 974321 223455666653 55654 5999999999999999999999999999999
Q ss_pred HhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhc
Q 011099 385 VNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALIN 464 (493)
Q Consensus 385 ~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~ 464 (493)
++|||||++|+++||+.||+++++.+|+|+.+..-+. .+.++.++|+++|+++|.+++|++||+||++|++.+++|+++
T Consensus 360 ~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~-~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~ 438 (456)
T PLN02210 360 VAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAV-DGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAP 438 (456)
T ss_pred HcCCCEEecccccccHHHHHHHHHHhCeEEEEecccc-CCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999655999999852110 136899999999999998888889999999999999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 011099 465 GGSSYNSLSKIAHECE 480 (493)
Q Consensus 465 ~g~~~~~~~~~~~~~~ 480 (493)
||||++++++|+++++
T Consensus 439 gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 439 GGSSARNLDLFISDIT 454 (456)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 9999999999999986
No 13
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=8.8e-67 Score=520.76 Aligned_cols=425 Identities=24% Similarity=0.364 Sum_probs=325.4
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTD 80 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 80 (493)
|+. ++||+++|+|++||++|++.||+.|+++ ||+|||++++.+...+.+.+. .+ ..+++..++.+..++. +.+
T Consensus 1 ~~~-~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~~i~~~~a--~~--~~i~~~~l~~p~~dgL-p~g 73 (442)
T PLN02208 1 MEP-KFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQKQLEHHNL--FP--DSIVFHPLTIPPVNGL-PAG 73 (442)
T ss_pred CCC-CCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhhhhhcccC--CC--CceEEEEeCCCCccCC-CCC
Confidence 444 4899999999999999999999999999 999999999977655544321 11 2466776654322222 332
Q ss_pred cc----h----HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcch
Q 011099 81 AS----L----VTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPAL 152 (493)
Q Consensus 81 ~~----~----~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~ 152 (493)
.. . ...+...+....+.++++++++ ++||||+| ++.|+..+|+++|||++.|+++++..+. +.+.+.
T Consensus 74 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~- 148 (442)
T PLN02208 74 AETTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG- 148 (442)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc-
Confidence 11 1 1223344556667788888776 89999999 5789999999999999999999988654 444331
Q ss_pred hhhhhhhhcccCCCcccCCCCCC----CCcccccccccCCCCcchHHHHHHh-hhccCccEEEEcChhhhhHHHHHHHHh
Q 011099 153 DKKVLQEEHVNQKKPLKIPGCSA----VRFEDTLEAFLDPYGPMYDGFLQVG-MDMSKADGILVNTWEDLESKTLAALRD 227 (493)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~p~l~~----~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~ 227 (493)
... ...+|++|. +...+++.. ......+..+.+.. +...+++++++|||++||+.+++.+..
T Consensus 149 -~~~----------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~ 215 (442)
T PLN02208 149 -GKL----------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISR 215 (442)
T ss_pred -ccc----------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHh
Confidence 000 012466653 334444432 12222233333332 345688999999999999998887765
Q ss_pred hhhhccCCCCCeEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 011099 228 FNMLRRVAKAPVYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVR 307 (493)
Q Consensus 228 ~~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 307 (493)
. ..|+++.|||++...... ..++.+|.+||+.+++++||||||||+..++.+++.+++.+++..+.+++|+++
T Consensus 216 ~------~~~~v~~vGpl~~~~~~~-~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r 288 (442)
T PLN02208 216 Q------YHKKVLLTGPMFPEPDTS-KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVK 288 (442)
T ss_pred h------cCCCEEEEeecccCcCCC-CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 2 246799999998643211 115678999999998899999999999999999999999999999999999998
Q ss_pred CCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhC
Q 011099 308 PPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNG 387 (493)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~G 387 (493)
.+.... + .. ..+|++|.++++++|+++.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 289 ~~~~~~----------------~-~~--~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~G 349 (442)
T PLN02208 289 PPRGSS----------------T-VQ--EGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSD 349 (442)
T ss_pred CCCccc----------------c-hh--hhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcC
Confidence 642100 0 01 4689999999999999998999999999999999999999999999999999
Q ss_pred CceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhhcC
Q 011099 388 VPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEK--QGHAIRNRVEELKHSAQKALING 465 (493)
Q Consensus 388 vP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~a~~~~ 465 (493)
||||++|+++||+.||+++++.+|+|+.+++. . .+.+++++|+++|+++|+++ .++++|++|+++++.+. ++
T Consensus 350 VP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~-~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~ 423 (442)
T PLN02208 350 CQMVLIPFLSDQVLFTRLMTEEFEVSVEVSRE-K-TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SP 423 (442)
T ss_pred CCEEecCcchhhHHHHHHHHHHhceeEEeccc-c-CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cC
Confidence 99999999999999999986669999998621 0 12489999999999999864 48899999999999963 47
Q ss_pred CChHHHHHHHHHHHHhc
Q 011099 466 GSSYNSLSKIAHECENS 482 (493)
Q Consensus 466 g~~~~~~~~~~~~~~~~ 482 (493)
|+|++++++|++++++.
T Consensus 424 gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 424 GLLTGYVDKFVEELQEY 440 (442)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 89999999999999753
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.3e-66 Score=524.66 Aligned_cols=447 Identities=28% Similarity=0.459 Sum_probs=325.6
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCC--CCCCeEEEEcCCCCCCCCCC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSP--DYDILDIVLLPCIDISGIVC 78 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~--~~~~i~~~~l~~~~~~~~~~ 78 (493)
|..+++||+++|+|++||++|++.||+.|++| ||+|||++++.+...+...+..+.+ .+..+++..++.+..+...+
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 77888999999999999999999999999999 9999999999887666555433211 01122333333221110002
Q ss_pred CCc---------------chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHH
Q 011099 79 TDA---------------SLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFV 143 (493)
Q Consensus 79 ~~~---------------~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~ 143 (493)
.+. .+...+........+.+.+++++. ++||||+|.++.|+..+|+++|||.+.|++++++..
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 110 111112222233444555555544 899999999999999999999999999999988766
Q ss_pred HHHhhhcchhhhhhhhhcccCCCcccCCCCCC---CCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHH
Q 011099 144 AVTIYAPALDKKVLQEEHVNQKKPLKIPGCSA---VRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESK 220 (493)
Q Consensus 144 ~~~~~~p~~~~~~~~~~~~~~~~~~~~p~l~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 220 (493)
+........... .........+.+|+++. +...++.. ......+............+.+++++||++++|.+
T Consensus 158 ~~~~~~~~~~~~---~~~~~~~~~~~~pg~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 158 CASYCIRVHKPQ---KKVASSSEPFVIPDLPGDIVITEEQIND--ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred HHHHHHHhcccc---cccCCCCceeeCCCCCCccccCHHhcCC--CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 654432211000 00011112233566652 22333321 11112222233333345677889999999999998
Q ss_pred HHHHHHhhhhhccCCCCCeEEeccccCCCCC-------C-C-CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHH
Q 011099 221 TLAALRDFNMLRRVAKAPVYPVGPLARSVAS-------S-P-VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMEL 291 (493)
Q Consensus 221 ~~~~~~~~~~~~~~~~p~~~~vGp~~~~~~~-------~-~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~ 291 (493)
..+.+.+. ..+++++|||+...... . . ...+.+|.+||+.+++++||||||||+...+.+++.++
T Consensus 233 ~~~~~~~~------~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~ 306 (482)
T PLN03007 233 YADFYKSF------VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEI 306 (482)
T ss_pred HHHHHHhc------cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHH
Confidence 88777653 12369999998643110 0 0 01246789999999889999999999988889999999
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccc
Q 011099 292 AWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGF 371 (493)
Q Consensus 292 ~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ 371 (493)
+++|+.++++|||+++...... + .. ..+|++|.+++.++|+++.+|+||.+||+|+++++|
T Consensus 307 ~~~l~~~~~~flw~~~~~~~~~----------------~-~~--~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~f 367 (482)
T PLN03007 307 AAGLEGSGQNFIWVVRKNENQG----------------E-KE--EWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGF 367 (482)
T ss_pred HHHHHHCCCCEEEEEecCCccc----------------c-hh--hcCCHHHHHHhccCCEEEecCCCHHHHhccCcccee
Confidence 9999999999999998542100 0 01 468999999999889999999999999999999999
Q ss_pred cccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC----CCCccchHHHHHHHHHHhcccchHHH
Q 011099 372 LTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS----EKSVVERGEIEMMVRRIVAEKQGHAI 447 (493)
Q Consensus 372 i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~----~~~~~~~~~l~~ai~~vl~~~~~~~~ 447 (493)
||||||||++||+++|||||++|+++||+.||+++++.+++|+.+. ... +...+++++|+++|+++|.++++++|
T Consensus 368 vtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~ 446 (482)
T PLN03007 368 VTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVG-AKKLVKVKGDFISREKVEKAVREVIVGEEAEER 446 (482)
T ss_pred eecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEec-cccccccccCcccHHHHHHHHHHHhcCcHHHHH
Confidence 9999999999999999999999999999999999866666666653 100 02568999999999999998878889
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 011099 448 RNRVEELKHSAQKALINGGSSYNSLSKIAHECEN 481 (493)
Q Consensus 448 r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 481 (493)
|+||+++++.+++|+.+||+|++++++|++++++
T Consensus 447 r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 447 RLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999985
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.9e-66 Score=515.01 Aligned_cols=439 Identities=24% Similarity=0.401 Sum_probs=331.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCc---
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDA--- 81 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~--- 81 (493)
++||+++|+|++||++|++.||+.|+.| |+.|||++++.+..++.+. ..... .+++++.++.+..++. +.+.
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~-~~~~~--~~i~~~~lp~p~~dgl-p~~~~~~ 80 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLPKI-PSQLS--SSITLVSFPLPSVPGL-PSSAESS 80 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhhhc-cccCC--CCeeEEECCCCccCCC-CCCcccc
Confidence 5899999999999999999999999999 9999999999765444321 11111 2589999986554433 3221
Q ss_pred -chH----HHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhh
Q 011099 82 -SLV----TQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKV 156 (493)
Q Consensus 82 -~~~----~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 156 (493)
+.. ..+........+.+.+++++. +++|||+|.++.|+..+|+++|||++.|+++++..++.+.+.+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 111 133345555666777777776 7999999999999999999999999999999988887765432211111
Q ss_pred hhhhcccCCCcc-cCCCCCC------CCcccccccccCC--CCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHh
Q 011099 157 LQEEHVNQKKPL-KIPGCSA------VRFEDTLEAFLDP--YGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRD 227 (493)
Q Consensus 157 ~~~~~~~~~~~~-~~p~l~~------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 227 (493)
......+.. .+|++.+ +...+++..+... .......+.+......+++++++|||++||+.+++.++.
T Consensus 159 ---~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 159 ---DLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred ---cCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 011111111 2333221 3344555444221 112344445555556788999999999999999998876
Q ss_pred hhhhccCCCCCeEEeccccCC--CCCCCC----cccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCc
Q 011099 228 FNMLRRVAKAPVYPVGPLARS--VASSPV----SGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQR 301 (493)
Q Consensus 228 ~~~~~~~~~p~~~~vGp~~~~--~~~~~~----~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 301 (493)
. ..++++.|||+... ...... ...++|.+||+++++++||||||||+..++.+++.+++.+|+.++++
T Consensus 236 ~------~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~ 309 (472)
T PLN02670 236 L------YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETP 309 (472)
T ss_pred h------hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCC
Confidence 3 12479999999753 111100 01256899999998899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHH
Q 011099 302 FIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTM 381 (493)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~ 381 (493)
|||+++.....+ . + .. ..+|++|.++++++++++.+|+||.+||+|+++++|||||||||++
T Consensus 310 FlWv~r~~~~~~-----------~----~-~~--~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~ 371 (472)
T PLN02670 310 FFWVLRNEPGTT-----------Q----N-AL--EMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVV 371 (472)
T ss_pred EEEEEcCCcccc-----------c----c-hh--hcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHH
Confidence 999998532110 0 0 01 4689999999999999988999999999999999999999999999
Q ss_pred HHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 011099 382 ESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKA 461 (493)
Q Consensus 382 eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a 461 (493)
||+++|||||++|+++||+.||+++ +++|+|+.+++.+. .+.++.++|+++|+++|.+++|++||+||+++++.++.
T Consensus 372 Eai~~GVP~l~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~-~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~- 448 (472)
T PLN02670 372 EGLGFGRVLILFPVLNEQGLNTRLL-HGKKLGLEVPRDER-DGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD- 448 (472)
T ss_pred HHHHcCCCEEeCcchhccHHHHHHH-HHcCeeEEeecccc-CCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999 58999999862211 13589999999999999888788899999999999776
Q ss_pred hhcCCChHHHHHHHHHHHHhcc
Q 011099 462 LINGGSSYNSLSKIAHECENSL 483 (493)
Q Consensus 462 ~~~~g~~~~~~~~~~~~~~~~~ 483 (493)
.+.....+++|++.++...
T Consensus 449 ---~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 449 ---MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred ---cchhHHHHHHHHHHHHHhc
Confidence 4555688999999988654
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-65 Score=509.73 Aligned_cols=429 Identities=21% Similarity=0.354 Sum_probs=326.8
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTD 80 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 80 (493)
|...++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+...+.. ....+....+.+..+|.. ++. +.+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~~~~--~~~~~~~~~v~~~~~p~~--~gl-p~g 74 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQLEH--LNLFPHNIVFRSVTVPHV--DGL-PVG 74 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhcc--cccCCCCceEEEEECCCc--CCC-CCc
Confidence 77889999999999999999999999999999 999999999976544332 111110113566666632 222 333
Q ss_pred cc--------hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcch
Q 011099 81 AS--------LVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPAL 152 (493)
Q Consensus 81 ~~--------~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~ 152 (493)
.+ ....+...+....+.+.+++++. ++||||+|. +.|+..+|+++|||.+.|+++++..++.+.. +.
T Consensus 75 ~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~- 149 (453)
T PLN02764 75 TETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG- 149 (453)
T ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc-
Confidence 11 11234444455667788888776 789999995 8999999999999999999999988777642 11
Q ss_pred hhhhhhhhcccCCCcccCCCCCC----CCccccccccc-CCCC--cchHHHHHHh-hhccCccEEEEcChhhhhHHHHHH
Q 011099 153 DKKVLQEEHVNQKKPLKIPGCSA----VRFEDTLEAFL-DPYG--PMYDGFLQVG-MDMSKADGILVNTWEDLESKTLAA 224 (493)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~p~l~~----~~~~~l~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~ 224 (493)
. .. . ...|++|. +...+++.... .... .....+.... ....+++++++|||++||+.+++.
T Consensus 150 ---~---~~---~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 150 ---G---EL---G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred ---c---cC---C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 0 00 0 12356652 44444443211 1111 1122222322 456778899999999999999988
Q ss_pred HHhhhhhccCCCCCeEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 011099 225 LRDFNMLRRVAKAPVYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIW 304 (493)
Q Consensus 225 ~~~~~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 304 (493)
++.. ..++++.|||+....... ...+.+|.+|||++++++||||||||+...+.+++.+++.+|+..+.+|+|
T Consensus 219 ~~~~------~~~~v~~VGPL~~~~~~~-~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflw 291 (453)
T PLN02764 219 IEKH------CRKKVLLTGPVFPEPDKT-RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLV 291 (453)
T ss_pred HHhh------cCCcEEEeccCccCcccc-ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEE
Confidence 8663 124699999997542111 013567999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHH
Q 011099 305 VVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESI 384 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal 384 (493)
+++.+.... + .. ..+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+
T Consensus 292 v~r~~~~~~----------------~-~~--~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal 352 (453)
T PLN02764 292 AVKPPRGSS----------------T-IQ--EALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESL 352 (453)
T ss_pred EEeCCCCCc----------------c-hh--hhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHH
Confidence 998542110 0 00 5799999999999999998999999999999999999999999999999
Q ss_pred HhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHh
Q 011099 385 VNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAE--KQGHAIRNRVEELKHSAQKAL 462 (493)
Q Consensus 385 ~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~a~ 462 (493)
++|||||++|+++||+.||+++++.+|+|+.+.+-+ .+.++.++|+++|+++|.+ +.++++|++++++++.++
T Consensus 353 ~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~--~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~--- 427 (453)
T PLN02764 353 LSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE--TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA--- 427 (453)
T ss_pred HcCCCEEeCCcccchHHHHHHHHHHhceEEEecccc--CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999976799999874110 1358999999999999987 457889999999999974
Q ss_pred hcCCChHHHHHHHHHHHHhcc
Q 011099 463 INGGSSYNSLSKIAHECENSL 483 (493)
Q Consensus 463 ~~~g~~~~~~~~~~~~~~~~~ 483 (493)
++|+|.+++++|++++++..
T Consensus 428 -~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 428 -SPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred -hcCCHHHHHHHHHHHHHHhc
Confidence 48999999999999999754
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.1e-66 Score=522.98 Aligned_cols=451 Identities=33% Similarity=0.563 Sum_probs=331.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCC--ceEEEEEcCCCCchhh--hhhccCCC--CCCCeEEEEcCCCCCCCCCC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNN--HHATIFVVANDTSSEQ--LSKLVNSP--DYDILDIVLLPCIDISGIVC 78 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~G--h~Vt~~~~~~~~~~v~--~~~~~~~~--~~~~i~~~~l~~~~~~~~~~ 78 (493)
|+||+++|+|++||++|++.||+.|+.+ | ..|||++++.+..... ...+...+ ...+++++.+|...... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT--T 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc--c
Confidence 5899999999999999999999999999 8 8899999987643211 11111111 01259999988644211 1
Q ss_pred CCcchHHHHHHHHHHhhHHHHHHHHhc----C---CC-CcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhc
Q 011099 79 TDASLVTQIAVMMHESIPALRSTISAM----K---YR-PTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAP 150 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~ll~~~----~---~~-~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p 150 (493)
. .. .+...+....+.+.+.++++ . .+ .+|||+|.++.|+..+|+++|||++.|+++++..++.+.+++
T Consensus 79 -~-~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 79 -E-DP--TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred -c-ch--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 1 11 22233334444444444433 1 12 389999999999999999999999999999999999888776
Q ss_pred chhhhh-hh-hhcccCCCcccCCCCC-CCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHh
Q 011099 151 ALDKKV-LQ-EEHVNQKKPLKIPGCS-AVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRD 227 (493)
Q Consensus 151 ~~~~~~-~~-~~~~~~~~~~~~p~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 227 (493)
...... .+ .++.....++.+|+++ ++...+++..+... ..+..+.+......+++++++||+.++|......+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 543211 00 0111111234588874 67777776544321 2345555666667889999999999999999888876
Q ss_pred hhhhccCCCCCeEEeccccC-CCCCCC--CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 011099 228 FNMLRRVAKAPVYPVGPLAR-SVASSP--VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIW 304 (493)
Q Consensus 228 ~~~~~~~~~p~~~~vGp~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 304 (493)
.. + ..|+++.|||+.. ...... ...+++|.+||+++++++||||||||+...+.+++.+++.+|+.++++|||
T Consensus 233 ~~--~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 233 SS--G--DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred cc--c--CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 31 0 2467999999943 221110 114568999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHH
Q 011099 305 VVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESI 384 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal 384 (493)
+++.+.... +.....+. +... ..+|++|.++++++++++ +|+||.+||.|+++++|||||||||+.||+
T Consensus 309 ~~~~~~~~~-----~~~~~~~~---~~~~--~~lp~~~~~r~~~~g~v~-~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~ 377 (481)
T PLN02554 309 SLRRASPNI-----MKEPPGEF---TNLE--EILPEGFLDRTKDIGKVI-GWAPQVAVLAKPAIGGFVTHCGWNSILESL 377 (481)
T ss_pred EEcCCcccc-----cccccccc---cchh--hhCChHHHHHhccCceEE-eeCCHHHHhCCcccCcccccCccchHHHHH
Confidence 997532100 00000000 0000 346899999988766554 999999999999999999999999999999
Q ss_pred HhCCceeecccchhcchhhHhhhhheeeeEEeeccC------CCCCccchHHHHHHHHHHhc-ccchHHHHHHHHHHHHH
Q 011099 385 VNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP------SEKSVVERGEIEMMVRRIVA-EKQGHAIRNRVEELKHS 457 (493)
Q Consensus 385 ~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~------~~~~~~~~~~l~~ai~~vl~-~~~~~~~r~~a~~l~~~ 457 (493)
++|||||++|+++||+.||+++++++|+|+.+++.. .+...+++++|+++|+++|. ++ .||+||+++++.
T Consensus 378 ~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r~~a~~l~~~ 454 (481)
T PLN02554 378 WFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVRKRVKEMSEK 454 (481)
T ss_pred HcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHHHHHHHHHHH
Confidence 999999999999999999966458999999985200 00146899999999999996 44 499999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhc
Q 011099 458 AQKALINGGSSYNSLSKIAHECENS 482 (493)
Q Consensus 458 ~~~a~~~~g~~~~~~~~~~~~~~~~ 482 (493)
+++|+++||++++++++|+++++.+
T Consensus 455 ~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 455 CHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999853
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.1e-65 Score=512.38 Aligned_cols=434 Identities=27% Similarity=0.409 Sum_probs=326.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCC-Ccc
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVI-QNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCT-DAS 82 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~-r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~ 82 (493)
+.||+++|+|++||++|++.||+.|+. + |+.|||++++.+.. +......+...+++++.++. ..+..... ...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~-G~~vT~v~t~~~~~---~~~~~~~~~~~~i~~~~i~d-glp~g~~~~~~~ 77 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTT-GTRVTFATCLSVIH---RSMIPNHNNVENLSFLTFSD-GFDDGVISNTDD 77 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCC-CcEEEEEeccchhh---hhhhccCCCCCCEEEEEcCC-CCCCcccccccc
Confidence 369999999999999999999999995 8 99999999985321 22222111112588988873 12211001 123
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcC---CCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhh
Q 011099 83 LVTQIAVMMHESIPALRSTISAMK---YRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQE 159 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~ll~~~~---~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (493)
....+........+.+.++++++. .+++|||+|.+..|+..+|+++|||.+.|++++++.++.+.+++..
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~------- 150 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG------- 150 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc-------
Confidence 334555566667778888887751 3459999999999999999999999999999999988887654311
Q ss_pred hcccCCCcccCCCCCCCCcccccccccCC--CCcchHHHHHHhhhcc--CccEEEEcChhhhhHHHHHHHHhhhhhccCC
Q 011099 160 EHVNQKKPLKIPGCSAVRFEDTLEAFLDP--YGPMYDGFLQVGMDMS--KADGILVNTWEDLESKTLAALRDFNMLRRVA 235 (493)
Q Consensus 160 ~~~~~~~~~~~p~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 235 (493)
....+.+|+++++...+++..+... .......+.+...... .++++++|||++||+..+..++.
T Consensus 151 ----~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-------- 218 (455)
T PLN02152 151 ----NNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-------- 218 (455)
T ss_pred ----CCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc--------
Confidence 0123458888888888887765432 1222333334444333 24699999999999998887643
Q ss_pred CCCeEEeccccCCC---CCC-C-----CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 011099 236 KAPVYPVGPLARSV---ASS-P-----VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVV 306 (493)
Q Consensus 236 ~p~~~~vGp~~~~~---~~~-~-----~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 306 (493)
.+++.|||+.+.. ... . ++.+.+|.+||+++++++||||||||+..++.+++++++.+|+.++++|||++
T Consensus 219 -~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~ 297 (455)
T PLN02152 219 -IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVI 297 (455)
T ss_pred -CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 1699999997531 000 0 01234799999999889999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHh
Q 011099 307 RPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVN 386 (493)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~ 386 (493)
+.+....... +....+ . ..+|++|.++.+++++++ +|+||.+||+|++|++|||||||||++||+++
T Consensus 298 r~~~~~~~~~---~~~~~~----~-----~~~~~~f~e~~~~~g~v~-~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~ 364 (455)
T PLN02152 298 TDKLNREAKI---EGEEET----E-----IEKIAGFRHELEEVGMIV-SWCSQIEVLRHRAVGCFVTHCGWSSSLESLVL 364 (455)
T ss_pred ecCccccccc---cccccc----c-----cccchhHHHhccCCeEEE-eeCCHHHHhCCcccceEEeeCCcccHHHHHHc
Confidence 8532100000 000000 0 124789998887766554 99999999999999999999999999999999
Q ss_pred CCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCC
Q 011099 387 GVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGG 466 (493)
Q Consensus 387 GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g 466 (493)
|||||++|+++||+.||+++++.+|+|+.+. .+. .+.+++++|+++|+++|+++ +++||+||+++++.+++++.+||
T Consensus 365 GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~-~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~gg 441 (455)
T PLN02152 365 GVPVVAFPMWSDQPANAKLLEEIWKTGVRVR-ENS-EGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGG 441 (455)
T ss_pred CCCEEeccccccchHHHHHHHHHhCceEEee-cCc-CCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999976667777764 222 23569999999999999754 56799999999999999999999
Q ss_pred ChHHHHHHHHHHH
Q 011099 467 SSYNSLSKIAHEC 479 (493)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (493)
+|++++++||+++
T Consensus 442 sS~~nl~~li~~i 454 (455)
T PLN02152 442 SSDKNVEAFVKTL 454 (455)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999999986
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.3e-65 Score=516.52 Aligned_cols=448 Identities=30% Similarity=0.543 Sum_probs=329.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCc---eEEEEEcCCCCchhhhhhccC-CCCCCCeEEEEcCCCCCCCCCCC
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNH---HATIFVVANDTSSEQLSKLVN-SPDYDILDIVLLPCIDISGIVCT 79 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh---~Vt~~~~~~~~~~v~~~~~~~-~~~~~~i~~~~l~~~~~~~~~~~ 79 (493)
++.||+|+|+|++||++|++.||+.|+.+ |. .||++++........+..+.. .....+|+|+.+|....... ..
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~-~~ 79 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPP-ME 79 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcc-cc
Confidence 45799999999999999999999999999 83 567766543221101111111 10112599999986432110 01
Q ss_pred --CcchHHHHHHHHHHhhHHHHHHHHhcC-------C-CCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhh
Q 011099 80 --DASLVTQIAVMMHESIPALRSTISAMK-------Y-RPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYA 149 (493)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~l~~ll~~~~-------~-~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 149 (493)
.......+........+.+.+.++++. . +++|||+|.++.|+..+|+++|||.+.|++++++.++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 111122444455555666666665541 1 359999999999999999999999999999999988887766
Q ss_pred cchhhhhhhhhcc--cCCCcccCCCC-CCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHH
Q 011099 150 PALDKKVLQEEHV--NQKKPLKIPGC-SAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALR 226 (493)
Q Consensus 150 p~~~~~~~~~~~~--~~~~~~~~p~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 226 (493)
|...... ..++. ....++.+||+ +.+...+++..++.. ..+..+.+......+++++++|||++||+.+++.++
T Consensus 160 ~~~~~~~-~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 160 PERHRKT-ASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred HHhcccc-ccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 5422111 10110 01133557888 457777776544332 123444555556678899999999999999988875
Q ss_pred hhhhhccCCCCCeEEeccccCCCCC--CC--CcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcE
Q 011099 227 DFNMLRRVAKAPVYPVGPLARSVAS--SP--VSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRF 302 (493)
Q Consensus 227 ~~~~~~~~~~p~~~~vGp~~~~~~~--~~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 302 (493)
.. .+ .+|++++|||++..... .. ...+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.++++|
T Consensus 237 ~~--~~--~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~f 312 (475)
T PLN02167 237 RL--PE--NYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRF 312 (475)
T ss_pred hh--cc--cCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcE
Confidence 52 11 14679999999863211 01 0123579999999988999999999998899999999999999999999
Q ss_pred EEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHH
Q 011099 303 IWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTME 382 (493)
Q Consensus 303 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~e 382 (493)
||+++...... . + .. ..+|++|.++++++++++ +|+||.+||+|++|++|||||||||++|
T Consensus 313 lw~~~~~~~~~-----------~----~-~~--~~lp~~~~er~~~rg~v~-~w~PQ~~iL~h~~vg~fvtH~G~nS~~E 373 (475)
T PLN02167 313 LWSIRTNPAEY-----------A----S-PY--EPLPEGFMDRVMGRGLVC-GWAPQVEILAHKAIGGFVSHCGWNSVLE 373 (475)
T ss_pred EEEEecCcccc-----------c----c-hh--hhCChHHHHHhccCeeee-ccCCHHHHhcCcccCeEEeeCCcccHHH
Confidence 99997532100 0 0 01 468999999998877665 9999999999999999999999999999
Q ss_pred HHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC--CCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 011099 383 SIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP--SEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQK 460 (493)
Q Consensus 383 al~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~--~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 460 (493)
|+++|||||++|+++||+.||+++++++|+|+.+.... .+...+++++|+++|+++|.++ ++||++|+++++.+++
T Consensus 374 al~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 374 SLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARK 451 (475)
T ss_pred HHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 99999999999999999999987557999999985210 0013579999999999999764 2499999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHh
Q 011099 461 ALINGGSSYNSLSKIAHECEN 481 (493)
Q Consensus 461 a~~~~g~~~~~~~~~~~~~~~ 481 (493)
|+++||||++++++||++++.
T Consensus 452 av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 452 AVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHhCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999985
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9.9e-65 Score=506.56 Aligned_cols=420 Identities=25% Similarity=0.362 Sum_probs=316.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcc--
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDAS-- 82 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~-- 82 (493)
++||+++|+|++||++|++.||+.|+++ |++|||++++.+...+..... .+ .++++..++.+..++. +.+.+
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~i~~~~~--~~--~~i~~~~i~lP~~dGL-P~g~e~~ 77 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQLQPLNL--FP--DSIVFEPLTLPPVDGL-PFGAETA 77 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhccccc--CC--CceEEEEecCCCcCCC-CCccccc
Confidence 5899999999999999999999999999 999999999976554433321 11 2478866654433333 33321
Q ss_pred --h----HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhh
Q 011099 83 --L----VTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKV 156 (493)
Q Consensus 83 --~----~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 156 (493)
. ...+........+.+.++++.. ++||||+|. +.|+..+|+++|||++.|+++++..++.+.+ +. ...
T Consensus 78 ~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~--~~~ 151 (446)
T PLN00414 78 SDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR--AEL 151 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--hhc
Confidence 1 1123334445555666666654 889999996 8999999999999999999999988777654 21 000
Q ss_pred hhhhcccCCCcccCCCCCC----CCccccc--ccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhh
Q 011099 157 LQEEHVNQKKPLKIPGCSA----VRFEDTL--EAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNM 230 (493)
Q Consensus 157 ~~~~~~~~~~~~~~p~l~~----~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 230 (493)
. ..+|+++. +...+.. ..+ .. ....+.+......+++++++|||.+||+.+++.+++.
T Consensus 152 --------~--~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-- 215 (446)
T PLN00414 152 --------G--FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ-- 215 (446)
T ss_pred --------C--CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh--
Confidence 0 11244432 2222211 111 11 1233334445567789999999999999999888763
Q ss_pred hccCCCCCeEEeccccCCCCCC-CCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011099 231 LRRVAKAPVYPVGPLARSVASS-PVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPP 309 (493)
Q Consensus 231 ~~~~~~p~~~~vGp~~~~~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 309 (493)
..++++.|||+....... .....++|.+|||.+++++||||||||....+.+++.+++.+|+.++++|+|+++.+
T Consensus 216 ----~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~ 291 (446)
T PLN00414 216 ----CQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP 291 (446)
T ss_pred ----cCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 123699999997532111 101235699999999999999999999999999999999999999999999999864
Q ss_pred CCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCc
Q 011099 310 LDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVP 389 (493)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP 389 (493)
.... + .. +.+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 292 ~~~~----------------~-~~--~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP 352 (446)
T PLN00414 292 KGSS----------------T-VQ--EALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQ 352 (446)
T ss_pred CCcc----------------c-ch--hhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCC
Confidence 2110 0 00 578999999999999998899999999999999999999999999999999999
Q ss_pred eeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHhhcCCC
Q 011099 390 MIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAE--KQGHAIRNRVEELKHSAQKALINGGS 467 (493)
Q Consensus 390 ~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~a~~~~g~ 467 (493)
||++|+++||+.||+++++++|+|+.+.+- . .+.+++++|+++|+++|.+ +.++++|++|+++++.+. ++||+
T Consensus 353 ~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~-~-~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ 427 (446)
T PLN00414 353 IVFIPQLADQVLITRLLTEELEVSVKVQRE-D-SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLL 427 (446)
T ss_pred EEecCcccchHHHHHHHHHHhCeEEEeccc-c-CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCc
Confidence 999999999999999997689999998521 1 1358999999999999976 347889999999999963 46774
Q ss_pred hHHHHHHHHHHHHh
Q 011099 468 SYNSLSKIAHECEN 481 (493)
Q Consensus 468 ~~~~~~~~~~~~~~ 481 (493)
+ ..+++|++++++
T Consensus 428 s-s~l~~~v~~~~~ 440 (446)
T PLN00414 428 S-GYADKFVEALEN 440 (446)
T ss_pred H-HHHHHHHHHHHH
Confidence 4 348999999965
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.2e-64 Score=510.42 Aligned_cols=437 Identities=28% Similarity=0.425 Sum_probs=332.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCc
Q 011099 3 IRKPHVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDA 81 (493)
Q Consensus 3 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 81 (493)
+++.||+++|+|++||++|++.||++|++|+ ||+|||++++.+...+.+... . .+++|+.++....+.. ....
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--~---~gi~fv~lp~~~p~~~-~~~~ 81 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--P---DNIRFATIPNVIPSEL-VRAA 81 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--C---CCEEEEECCCCCCCcc-cccc
Confidence 3479999999999999999999999999873 699999999987766555321 1 3689998885211111 1122
Q ss_pred chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhh-hhh
Q 011099 82 SLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVL-QEE 160 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~-~~~ 160 (493)
+....+........+.+.++++++..++||||+|.++.|+..+|+++|||++.|+++++..++.+.+++.+..... +..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 82 DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 3333344444456667788887654468999999999999999999999999999999988777766554322110 000
Q ss_pred ccc-CCCcc-cCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCC
Q 011099 161 HVN-QKKPL-KIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAP 238 (493)
Q Consensus 161 ~~~-~~~~~-~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~ 238 (493)
... ..... .+|+++++...+++..+.......++.+.+......++.++++||+++||+.+++.+... ..++
T Consensus 162 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~------~~~~ 235 (459)
T PLN02448 162 LSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK------FPFP 235 (459)
T ss_pred cccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh------cCCc
Confidence 000 01111 377877777777776544433333555566665667788999999999999988888663 1236
Q ss_pred eEEeccccCCCC---CC-C--C-cccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 011099 239 VYPVGPLARSVA---SS-P--V-SGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLD 311 (493)
Q Consensus 239 ~~~vGp~~~~~~---~~-~--~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 311 (493)
++.|||+..... .. . . ..+.++.+||+.++++++|||||||+...+.+++++++++|+.++++|||+++...
T Consensus 236 ~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~- 314 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA- 314 (459)
T ss_pred eEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch-
Confidence 999999975311 00 0 0 01247889999998899999999999888899999999999999999999885321
Q ss_pred CCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCcee
Q 011099 312 HDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMI 391 (493)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l 391 (493)
.++.+++++ |.++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 315 ----------------------------~~~~~~~~~-~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l 365 (459)
T PLN02448 315 ----------------------------SRLKEICGD-MGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPML 365 (459)
T ss_pred ----------------------------hhHhHhccC-CEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEE
Confidence 133333333 455569999999999999999999999999999999999999
Q ss_pred ecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHhhcCCChH
Q 011099 392 VWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAE--KQGHAIRNRVEELKHSAQKALINGGSSY 469 (493)
Q Consensus 392 ~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~a~~~~g~~~ 469 (493)
++|+++||+.||+++++.+|+|+.+.....+...+++++|+++|+++|.+ +++++||+||++|++++++|+.+||||+
T Consensus 366 ~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~ 445 (459)
T PLN02448 366 TFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSD 445 (459)
T ss_pred eccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999975689998875210001357999999999999986 3678899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 011099 470 NSLSKIAHECEN 481 (493)
Q Consensus 470 ~~~~~~~~~~~~ 481 (493)
+++++|++++++
T Consensus 446 ~~l~~~v~~~~~ 457 (459)
T PLN02448 446 TNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHhc
Confidence 999999999984
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=6.3e-46 Score=378.13 Aligned_cols=377 Identities=17% Similarity=0.234 Sum_probs=250.4
Q ss_pred CEEEEE-cCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCC-CC-C------CC
Q 011099 6 PHVALL-ASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCI-DI-S------GI 76 (493)
Q Consensus 6 ~~vl~~-~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~-~~-~------~~ 76 (493)
.+|+.+ |.++.+|+.-+-.|+++|++| ||+||++++...... ... .. .++....++.. +. . ..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~~--~~~--~~---~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVYY--ASH--LC---GNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccccccc--ccC--CC---CCEEEEEcCCChHHHHHHHhhhhH
Confidence 457655 889999999999999999999 999999988641100 000 01 24444443210 00 0 00
Q ss_pred CCC---CcchH---HHHHH----HH--HHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHc-CCeEEEEecchHHHH
Q 011099 77 VCT---DASLV---TQIAV----MM--HESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEF-EMLKYMFIASNAWFV 143 (493)
Q Consensus 77 ~~~---~~~~~---~~~~~----~~--~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~l-gIP~v~~~~~~~~~~ 143 (493)
... ..+.. ..... .+ ....+.+.++++.-+.++|+||+|.+..|+..+|+.+ ++|+|.+++......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 000 00000 00111 11 1122345666651123799999999999998899999 999888776443211
Q ss_pred -HHHhh-hcchhhhhhhhhcccCCCcccCCCCC-----CCCccc-ccccc--------cCCCCcchHHHHHHh-h-----
Q 011099 144 -AVTIY-APALDKKVLQEEHVNQKKPLKIPGCS-----AVRFED-TLEAF--------LDPYGPMYDGFLQVG-M----- 201 (493)
Q Consensus 144 -~~~~~-~p~~~~~~~~~~~~~~~~~~~~p~l~-----~~~~~~-l~~~~--------~~~~~~~~~~~~~~~-~----- 201 (493)
..... .|. .+-++|... .+.+++ +...+ ........+.+.+.. .
T Consensus 173 ~~~~~gg~p~--------------~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~ 238 (507)
T PHA03392 173 NFETMGAVSR--------------HPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPT 238 (507)
T ss_pred HHHhhccCCC--------------CCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCC
Confidence 11111 111 111222211 111111 11100 000001111111111 0
Q ss_pred ---hccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCCeEEeccccCCC-CCCCCcccccccccccCCCCCeEEEEEc
Q 011099 202 ---DMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAPVYPVGPLARSV-ASSPVSGSHVVLDWLDKQPHESVIYVSF 277 (493)
Q Consensus 202 ---~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~~~~vGp~~~~~-~~~~~~~~~~~~~~l~~~~~~~~v~vs~ 277 (493)
.....+.+++|+.+.++.+ ||..|++++|||++.+. ...+ +++++.+|++.. ++++|||||
T Consensus 239 ~~~l~~~~~l~lvns~~~~d~~------------rp~~p~v~~vGgi~~~~~~~~~--l~~~l~~fl~~~-~~g~V~vS~ 303 (507)
T PHA03392 239 IRELRNRVQLLFVNVHPVFDNN------------RPVPPSVQYLGGLHLHKKPPQP--LDDYLEEFLNNS-TNGVVYVSF 303 (507)
T ss_pred HHHHHhCCcEEEEecCccccCC------------CCCCCCeeeecccccCCCCCCC--CCHHHHHHHhcC-CCcEEEEEC
Confidence 1134456788888877753 54445599999998743 2122 788999999876 457999999
Q ss_pred CCCC---CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeec
Q 011099 278 GSGG---TLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVP 354 (493)
Q Consensus 278 GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 354 (493)
||+. ..+.+.++.+++|+++++++|||+++..... ..+|+ |+.+.
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~-----------------------~~~p~---------Nv~i~ 351 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA-----------------------INLPA---------NVLTQ 351 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc-----------------------ccCCC---------ceEEe
Confidence 9984 3567889999999999999999999643210 13344 88888
Q ss_pred cCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHH
Q 011099 355 MWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMM 434 (493)
Q Consensus 355 ~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~a 434 (493)
+|+||.+||+|+.+++||||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++ ...+++++|.++
T Consensus 352 ~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~-----~~~~t~~~l~~a 425 (507)
T PHA03392 352 KWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALD-----TVTVSAAQLVLA 425 (507)
T ss_pred cCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEec-----cCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 6999999976 267899999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHH
Q 011099 435 VRRIVAEKQGHAIRNRVEELKHSAQK 460 (493)
Q Consensus 435 i~~vl~~~~~~~~r~~a~~l~~~~~~ 460 (493)
|+++++|++ ||+||+++++.++.
T Consensus 426 i~~vl~~~~---y~~~a~~ls~~~~~ 448 (507)
T PHA03392 426 IVDVIENPK---YRKNLKELRHLIRH 448 (507)
T ss_pred HHHHhCCHH---HHHHHHHHHHHHHh
Confidence 999999988 99999999999877
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=7e-48 Score=399.28 Aligned_cols=381 Identities=22% Similarity=0.281 Sum_probs=212.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhcc-CCCCCCCeEEEEcCCCCCCCCCCCC-cchH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLV-NSPDYDILDIVLLPCIDISGIVCTD-ASLV 84 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~-~~~~ 84 (493)
+|+++| ++.||+.++..|+++|++| ||+||++++... .... ..+ ..+++..++........... ....
T Consensus 2 kvLv~p-~~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
T PF00201_consen 2 KVLVFP-MAYSHFIFMRPLAEELAER-GHNVTVLTPSPS------SSLNPSKP--SNIRFETYPDPYPEEEFEEIFPEFI 71 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHH------HT--------S-CCEEEE-----TT------TTHH
T ss_pred EEEEeC-CCcCHHHHHHHHHHHHHhc-CCceEEEEeecc------cccccccc--cceeeEEEcCCcchHHHhhhhHHHH
Confidence 477777 4789999999999999999 999999998631 1111 111 24555555432111110111 1111
Q ss_pred HH----------HHHH-------HHHhhHHH---------HHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecc
Q 011099 85 TQ----------IAVM-------MHESIPAL---------RSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 85 ~~----------~~~~-------~~~~~~~l---------~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~ 138 (493)
.. +... .......+ .+.+++ .++|++|+|.+..|+..+|+.+|+|.+.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 72 SKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 10 0000 00011111 122232 27999999999999999999999997764322
Q ss_pred hHHHHHHHhhhcchhhhhhhhhcccCCCcccCCCCCCCCcccccc--cccCCCCcch-HHHHHHh-hhcc-C--ccEEEE
Q 011099 139 NAWFVAVTIYAPALDKKVLQEEHVNQKKPLKIPGCSAVRFEDTLE--AFLDPYGPMY-DGFLQVG-MDMS-K--ADGILV 211 (493)
Q Consensus 139 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~--~~~~~~~~~~-~~~~~~~-~~~~-~--~~~~l~ 211 (493)
... +... .........|+..+.....+.. .+..|....+ ....+.. .... . ....-.
T Consensus 150 ~~~--------~~~~--------~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~ 213 (500)
T PF00201_consen 150 TPM--------YDLS--------SFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKY 213 (500)
T ss_dssp CSC--------SCCT--------CCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEE
T ss_pred ccc--------chhh--------hhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhh
Confidence 100 0000 0000111112222211111111 1222222222 1111111 1111 0 001111
Q ss_pred cChh----hhhHHHHHHHHh-h--hhhccCCCCCeEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCC-C
Q 011099 212 NTWE----DLESKTLAALRD-F--NMLRRVAKAPVYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGT-L 283 (493)
Q Consensus 212 ~s~~----~l~~~~~~~~~~-~--~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~-~ 283 (493)
.... ++.......+.+ . .+++||..|+++++|+++..... + ++.++++|++...++++|||||||+.. .
T Consensus 214 ~~~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~-~--l~~~~~~~~~~~~~~~vv~vsfGs~~~~~ 290 (500)
T PF00201_consen 214 FGFPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAK-P--LPEELWNFLDSSGKKGVVYVSFGSIVSSM 290 (500)
T ss_dssp SS-GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S-----T--CHHHHHHHTSTTTTTEEEEEE-TSSSTT-
T ss_pred cccccccHHHHHHHHHHhhhccccCcCCcchhhcccccCcccccccc-c--cccccchhhhccCCCCEEEEecCcccchh
Confidence 1111 111111111111 1 22456556679999999765322 2 788999999985677899999999865 4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhc
Q 011099 284 SSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEIL 363 (493)
Q Consensus 284 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL 363 (493)
+.+.++++++++++++++|||++..... ..+|+ |+++.+|+||.+||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~iW~~~~~~~------------------------~~l~~---------n~~~~~W~PQ~~lL 337 (500)
T PF00201_consen 291 PEEKLKEIAEAFENLPQRFIWKYEGEPP------------------------ENLPK---------NVLIVKWLPQNDLL 337 (500)
T ss_dssp HHHHHHHHHHHHHCSTTEEEEEETCSHG------------------------CHHHT---------TEEEESS--HHHHH
T ss_pred HHHHHHHHHHHHhhCCCccccccccccc------------------------ccccc---------eEEEeccccchhhh
Confidence 4444889999999999999999954211 22333 78888999999999
Q ss_pred CCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 364 AHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 364 ~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
+|+++++||||||+||+.||+++|||||++|+++||+.||+++ ++.|+|+.++ ...+|+++|.++|+++|+|++
T Consensus 338 ~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~-----~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 338 AHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLD-----KNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp TSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEG-----GGC-SHHHHHHHHHHHHHSHH
T ss_pred hcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEE-----ecCCcHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999998 6999999987 377899999999999999988
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011099 444 GHAIRNRVEELKHSAQK 460 (493)
Q Consensus 444 ~~~~r~~a~~l~~~~~~ 460 (493)
|++||+++++.++.
T Consensus 412 ---y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 412 ---YKENAKRLSSLFRD 425 (500)
T ss_dssp ---HHHHHHHHHHTTT-
T ss_pred ---HHHHHHHHHHHHhc
Confidence 99999999988554
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=5.9e-43 Score=351.28 Aligned_cols=375 Identities=20% Similarity=0.210 Sum_probs=238.2
Q ss_pred EcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHH
Q 011099 11 LASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVM 90 (493)
Q Consensus 11 ~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (493)
+.+|++||++|++.||++|++| ||+|+|++++.+.+.+...|+.+.+.+..+..... .+.. .. .+........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~----~~~~-~~-~~~~~~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDN----PPEN-TE-EEPIDIIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccc----cccc-cC-cchHHHHHHH
Confidence 3689999999999999999999 99999999999888888876654332211111000 0000 00 1222222222
Q ss_pred HHHhh---HHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhcccCCCc
Q 011099 91 MHESI---PALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVNQKKP 167 (493)
Q Consensus 91 ~~~~~---~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 167 (493)
..... +.+.++++++ +||+||+|.+++++..+|+++|||+|.+++.+... ..++.... +
T Consensus 74 ~~~~~~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~~------------~ 135 (392)
T TIGR01426 74 LDEAEDVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMVS------------P 135 (392)
T ss_pred HHHHHHHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccccc------------c
Confidence 22222 2333334443 89999999998899999999999999886543211 00000000 0
Q ss_pred ccCCCCCCCCcccccccccCCCCcchHHHHHHhhhcc----------CccEEEEcChhhhhHHHHHHHHhhhhhccCCCC
Q 011099 168 LKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMS----------KADGILVNTWEDLESKTLAALRDFNMLRRVAKA 237 (493)
Q Consensus 168 ~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p 237 (493)
. .+.+ +.................+.+++... +. .....+..+...+++ .++.+|
T Consensus 136 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~g-l~~~~~~~~~~~~~~~~l~~~~~~l~~------------~~~~~~ 199 (392)
T TIGR01426 136 A-GEGS--AEEGAIAERGLAEYVARLSALLEEHG-ITTPPVEFLAAPRRDLNLVYTPKAFQP------------AGETFD 199 (392)
T ss_pred c-chhh--hhhhccccchhHHHHHHHHHHHHHhC-CCCCCHHHHhcCCcCcEEEeCChHhCC------------CccccC
Confidence 0 0000 00000000000000000011111100 00 000112222222221 111345
Q ss_pred C-eEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccc
Q 011099 238 P-VYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFD 316 (493)
Q Consensus 238 ~-~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 316 (493)
+ ++++||+..... +...|....+++++||||+||+.......+..++++++..+.+++|..+......
T Consensus 200 ~~~~~~Gp~~~~~~--------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~--- 268 (392)
T TIGR01426 200 DSFTFVGPCIGDRK--------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPA--- 268 (392)
T ss_pred CCeEEECCCCCCcc--------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChh---
Confidence 4 999999876421 2234766666788999999998666667888899999999999999886442100
Q ss_pred cccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccc
Q 011099 317 SYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLY 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~ 396 (493)
.+ ..++ .|+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|..
T Consensus 269 ---------------~~--~~~~---------~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~ 320 (392)
T TIGR01426 269 ---------------DL--GELP---------PNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQG 320 (392)
T ss_pred ---------------Hh--ccCC---------CCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCc
Confidence 00 1122 2788889999999999999 999999999999999999999999999
Q ss_pred hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011099 397 AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIA 476 (493)
Q Consensus 397 ~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 476 (493)
.||+.||+++ +++|+|..+. ...+++++|.++|+++|.|++ |+++++++++.+++. +|. ..+.+++
T Consensus 321 ~dq~~~a~~l-~~~g~g~~l~-----~~~~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~~---~~~--~~aa~~i 386 (392)
T TIGR01426 321 ADQPMTARRI-AELGLGRHLP-----PEEVTAEKLREAVLAVLSDPR---YAERLRKMRAEIREA---GGA--RRAADEI 386 (392)
T ss_pred ccHHHHHHHH-HHCCCEEEec-----cccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHc---CCH--HHHHHHH
Confidence 9999999999 6999999875 267899999999999999887 999999999998873 554 3444444
Q ss_pred HHH
Q 011099 477 HEC 479 (493)
Q Consensus 477 ~~~ 479 (493)
+.+
T Consensus 387 ~~~ 389 (392)
T TIGR01426 387 EGF 389 (392)
T ss_pred HHh
Confidence 443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3e-43 Score=354.99 Aligned_cols=394 Identities=15% Similarity=0.118 Sum_probs=237.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCC-CCCCcchH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGI-VCTDASLV 84 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~~~ 84 (493)
|||+|+++|+.||++|++.||++|++| ||+|+|++++.+...+...|+++.+.+..+............. ........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 789999999999999999999999999 9999999999887777776655543222111000000000000 00000111
Q ss_pred HHHHHHHHHhhHHHHHHHHhc-CCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhccc
Q 011099 85 TQIAVMMHESIPALRSTISAM-KYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVN 163 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~-~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 163 (493)
.............+.++++.. ..+||+||+|.+.+++..+|+++|||++.+++++....+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~---------------- 143 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP---------------- 143 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC----------------
Confidence 111112222222333333322 239999999998999999999999999999876532111000
Q ss_pred CCCcccCCCCCCCCccccc-ccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCC-eEE
Q 011099 164 QKKPLKIPGCSAVRFEDTL-EAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAP-VYP 241 (493)
Q Consensus 164 ~~~~~~~p~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~-~~~ 241 (493)
............... ..+............+.. .+............ ....+.+.....++.+++ ..+
T Consensus 144 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 213 (401)
T cd03784 144 ----PPLGRANLRLYALLEAELWQDLLGAWLRARRRRL-GLPPLSLLDGSDVP-----ELYGFSPAVLPPPPDWPRFDLV 213 (401)
T ss_pred ----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCCc-----EEEecCcccCCCCCCccccCcE
Confidence 000000000000000 000000000011111111 01100000000000 000001110111224554 677
Q ss_pred eccccCC-CCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCcccccc
Q 011099 242 VGPLARS-VASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSS-KQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYL 319 (493)
Q Consensus 242 vGp~~~~-~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 319 (493)
+|..... +.... .+.++..|++. .+++|||++||+..... ..+..++++++..+.++||+++......
T Consensus 214 ~g~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~------ 283 (401)
T cd03784 214 TGYGFRDVPYNGP--PPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA------ 283 (401)
T ss_pred eCCCCCCCCCCCC--CCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc------
Confidence 7643332 22111 56677888876 45699999999876444 4577889999999999999986543200
Q ss_pred ccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhc
Q 011099 320 TAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQ 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ 399 (493)
..+| .|+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|+..||
T Consensus 284 ----------------~~~~---------~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ 336 (401)
T cd03784 284 ----------------EDLP---------DNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFGDQ 336 (401)
T ss_pred ----------------cCCC---------CceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCCCc
Confidence 1222 2788889999999999999 999999999999999999999999999999
Q ss_pred chhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011099 400 KMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHE 478 (493)
Q Consensus 400 ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 478 (493)
+.||+++ +++|+|+.++ ...+++++|.++|+++++++ ++++++++++.++. .+|. ..+.++|+.
T Consensus 337 ~~~a~~~-~~~G~g~~l~-----~~~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~---~~g~--~~~~~~ie~ 400 (401)
T cd03784 337 PFWAARV-AELGAGPALD-----PRELTAERLAAALRRLLDPP----SRRRAAALLRRIRE---EDGV--PSAADVIER 400 (401)
T ss_pred HHHHHHH-HHCCCCCCCC-----cccCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh---ccCH--HHHHHHHhh
Confidence 9999999 6999999975 25589999999999999854 56667777777654 2443 455555543
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=9.5e-42 Score=353.51 Aligned_cols=408 Identities=27% Similarity=0.382 Sum_probs=242.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcch-
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASL- 83 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~- 83 (493)
+.|++++++|+.||++|+..||+.|+++ ||+||++++.......... ...... ..+.....+........+.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKS-SKSKSI-KKINPPPFEFLTIPDGLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCc-ccceee-eeeecChHHhhhhhhhhccchHHH
Confidence 5789999999999999999999999999 9999999998654432221 111000 00000111111110111222111
Q ss_pred ----HHHHHHHHHHhhHHHHHHHHhc----CCCCcEEEECCcchhHHHHHHHcC-CeEEEEecchHHHHHHHhhhcchhh
Q 011099 84 ----VTQIAVMMHESIPALRSTISAM----KYRPTALIVDLFGTEAMAVADEFE-MLKYMFIASNAWFVAVTIYAPALDK 154 (493)
Q Consensus 84 ----~~~~~~~~~~~~~~l~~ll~~~----~~~~DlVI~D~~~~~a~~~A~~lg-IP~v~~~~~~~~~~~~~~~~p~~~~ 154 (493)
..........+...+.+.+..+ ..++|++|+|.+..+...+|...+ |+...+...++.......+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~-- 159 (496)
T KOG1192|consen 82 DLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS-- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc--
Confidence 1111222333333333333222 234999999998777777776665 99888887776654443322211
Q ss_pred hhhhhhcccCC-CcccCCCCC-CCCcccccccccCCC-CcchHHHHHH-hhhc----cCccEEEEcC-hhhhhHHHHHHH
Q 011099 155 KVLQEEHVNQK-KPLKIPGCS-AVRFEDTLEAFLDPY-GPMYDGFLQV-GMDM----SKADGILVNT-WEDLESKTLAAL 225 (493)
Q Consensus 155 ~~~~~~~~~~~-~~~~~p~l~-~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~----~~~~~~l~~s-~~~l~~~~~~~~ 225 (493)
.. +....... ....+++.. .+....+........ .......... .... .....++.++ +..++......+
T Consensus 160 ~~-p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 160 YV-PSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred cc-CcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 11 00000000 000000000 000000110000000 0000011110 0000 1112333333 333433322111
Q ss_pred HhhhhhccCCCCCeEEeccccCCCCCCCCcccccccccccCCCCC--eEEEEEcCCCC---CCCHHHHHHHHHHHHhC-C
Q 011099 226 RDFNMLRRVAKAPVYPVGPLARSVASSPVSGSHVVLDWLDKQPHE--SVIYVSFGSGG---TLSSKQTMELAWGLEQS-K 299 (493)
Q Consensus 226 ~~~~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~GS~~---~~~~~~~~~~~~al~~~-~ 299 (493)
+ ++|..|++++|||+....... ....+.+|++..+.. ++|||||||+. .++.++..+++.+++.+ +
T Consensus 239 ~-----~~~~~~~v~~IG~l~~~~~~~---~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~ 310 (496)
T KOG1192|consen 239 E-----PRPLLPKVIPIGPLHVKDSKQ---KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQG 310 (496)
T ss_pred C-----CCCCCCCceEECcEEecCccc---cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCC
Confidence 1 233356799999999873221 111466777665554 89999999997 79999999999999999 8
Q ss_pred CcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhh-cCCCCcccccccCCch
Q 011099 300 QRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEI-LAHPSVGGFLTHCGWN 378 (493)
Q Consensus 300 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~l-L~~~~~~~~i~HgG~g 378 (493)
++|||+++.... ..+++++.++ ...|++..+|+||.++ |+|+++++||||||||
T Consensus 311 ~~FiW~~~~~~~------------------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~n 365 (496)
T KOG1192|consen 311 VTFLWKYRPDDS------------------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWN 365 (496)
T ss_pred ceEEEEecCCcc------------------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCccc
Confidence 889999975421 1123333332 2336777799999998 5999999999999999
Q ss_pred HHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 011099 379 STMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSA 458 (493)
Q Consensus 379 s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~ 458 (493)
||+|++++|||||++|+++||+.||+++++..++++... ...+.+++..++.+++.+++ |+++++++++..
T Consensus 366 St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~------~~~~~~~~~~~~~~il~~~~---y~~~~~~l~~~~ 436 (496)
T KOG1192|consen 366 STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDK------RDLVSEELLEAIKEILENEE---YKEAAKRLSEIL 436 (496)
T ss_pred HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEeh------hhcCcHHHHHHHHHHHcChH---HHHHHHHHHHHH
Confidence 999999999999999999999999999965555555543 55666669999999999988 999999999987
Q ss_pred HH
Q 011099 459 QK 460 (493)
Q Consensus 459 ~~ 460 (493)
+.
T Consensus 437 ~~ 438 (496)
T KOG1192|consen 437 RD 438 (496)
T ss_pred Hc
Confidence 64
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-40 Score=325.91 Aligned_cols=390 Identities=18% Similarity=0.194 Sum_probs=243.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCC-----CCCCCC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDI-----SGIVCT 79 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~-----~~~~~~ 79 (493)
+|||+++..|++||++|.++||++|.++ ||+|+|+|++.+.+.+.+.|+.+ ..++..+. ++....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~~~ve~ag~~f---------~~~~~~~~~~~~~~~~~~~ 70 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFKEFVEAAGLAF---------VAYPIRDSELATEDGKFAG 70 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHHHHHHHHHhCcce---------eeccccCChhhhhhhhhhc
Confidence 4789999999999999999999999999 99999999999999988887332 22222111 011011
Q ss_pred CcchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhh
Q 011099 80 DASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQE 159 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (493)
...+.. ...........+.+.+.+. .+|+++.|.....+ .+++..++|++............. ....
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--- 137 (406)
T COG1819 71 VKSFRR-LLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAA------GLPL--- 137 (406)
T ss_pred cchhHH-HhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccc------ccCc---
Confidence 111111 2222333333445556665 89999998866655 889999999887654432211111 0000
Q ss_pred hcccCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccC---ccEEEEcChhhhhHHHHHHHHhhhhhccCCC
Q 011099 160 EHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSK---ADGILVNTWEDLESKTLAALRDFNMLRRVAK 236 (493)
Q Consensus 160 ~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 236 (493)
...........+.. .+.............. ......+....+.. .......+-..++..+.+ ..+..++ ..
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~ 211 (406)
T COG1819 138 PPVGIAGKLPIPLY-PLPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTD---VLFPPGD-RL 211 (406)
T ss_pred cccccccccccccc-ccChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccc---cccCCCC-CC
Confidence 00000000000000 0000000000000000 00000000000000 000000000011110000 0000000 12
Q ss_pred CC-eEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcc
Q 011099 237 AP-VYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVF 315 (493)
Q Consensus 237 p~-~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 315 (493)
|. ..++||+...+ ..+...|.. .++++||+|+||.... .+.++.++++++.++.+||...+. .+..
T Consensus 212 p~~~~~~~~~~~~~-------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~~-- 278 (406)
T COG1819 212 PFIGPYIGPLLGEA-------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARDT-- 278 (406)
T ss_pred CCCcCccccccccc-------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cccc--
Confidence 33 56666666542 333444433 3567999999999766 788999999999999999999866 2210
Q ss_pred ccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeeccc
Q 011099 316 DSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~ 395 (493)
. ..+|+ |+.+.+|+||.++|++++ +||||||+|||+|||++|||+|++|.
T Consensus 279 -----------------~--~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~ 328 (406)
T COG1819 279 -----------------L--VNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPD 328 (406)
T ss_pred -----------------c--ccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecC
Confidence 0 44555 788889999999999999 99999999999999999999999999
Q ss_pred chhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 011099 396 YAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKI 475 (493)
Q Consensus 396 ~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~ 475 (493)
..||+.||.|+ |++|+|..++ ...++++.|+++|+++|+++. |+++++++++.+++. +| ...+.++
T Consensus 329 ~~DQ~~nA~rv-e~~G~G~~l~-----~~~l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~~---~g--~~~~a~~ 394 (406)
T COG1819 329 GADQPLNAERV-EELGAGIALP-----FEELTEERLRAAVNEVLADDS---YRRAAERLAEEFKEE---DG--PAKAADL 394 (406)
T ss_pred CcchhHHHHHH-HHcCCceecC-----cccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhhc---cc--HHHHHHH
Confidence 99999999998 7999999986 267999999999999999988 999999999998885 66 3567777
Q ss_pred HHHHH
Q 011099 476 AHECE 480 (493)
Q Consensus 476 ~~~~~ 480 (493)
++++.
T Consensus 395 le~~~ 399 (406)
T COG1819 395 LEEFA 399 (406)
T ss_pred HHHHH
Confidence 77754
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=1.9e-25 Score=219.10 Aligned_cols=323 Identities=16% Similarity=0.143 Sum_probs=197.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQ 86 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 86 (493)
+|++.+-++-||++|.++||++|.++ ||+|.|++...-. +...+.. .++.+..++....... . .......
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~---e~~l~~~----~g~~~~~~~~~~l~~~-~-~~~~~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGI---EKTIIEK----ENIPYYSISSGKLRRY-F-DLKNIKD 72 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcc---ccccCcc----cCCcEEEEeccCcCCC-c-hHHHHHH
Confidence 48888888889999999999999999 9999999977532 2232222 2567766663222211 0 0111111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEECCcc--hhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhcccC
Q 011099 87 IAVMMHESIPALRSTISAMKYRPTALIVDLFG--TEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHVNQ 164 (493)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~--~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 164 (493)
..... ...-....++++. +||+||+...+ .++..+|..+|+|+++.....
T Consensus 73 ~~~~~-~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------- 124 (352)
T PRK12446 73 PFLVM-KGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------- 124 (352)
T ss_pred HHHHH-HHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 11222 2233445667777 99999987533 346789999999988753321
Q ss_pred CCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCCeEEecc
Q 011099 165 KKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAPVYPVGP 244 (493)
Q Consensus 165 ~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~~~~vGp 244 (493)
.+++ .+.+. .+.++.+ ..+|++.... + +..+++++|+
T Consensus 125 -----~~g~-------------------~nr~~-----~~~a~~v-~~~f~~~~~~----------~---~~~k~~~tG~ 161 (352)
T PRK12446 125 -----TPGL-------------------ANKIA-----LRFASKI-FVTFEEAAKH----------L---PKEKVIYTGS 161 (352)
T ss_pred -----CccH-------------------HHHHH-----HHhhCEE-EEEccchhhh----------C---CCCCeEEECC
Confidence 1111 00000 0112222 2233221110 0 1124889997
Q ss_pred ccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHH-HHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCC
Q 011099 245 LARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQ-TMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGS 323 (493)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 323 (493)
..++..... ......+.+.-.+++++|+|..||.+....+. +.+++..+. .+.+++|+++...
T Consensus 162 Pvr~~~~~~--~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~------------- 225 (352)
T PRK12446 162 PVREEVLKG--NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN------------- 225 (352)
T ss_pred cCCcccccc--cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch-------------
Confidence 776532110 11111122222345679999999987644433 334444443 2477888885431
Q ss_pred CCCcccccccccCCCchhHHhhhCCCceeeccCC-C-hhhhcCCCCcccccccCCchHHHHHHHhCCceeecccc-----
Q 011099 324 GALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWA-P-QPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLY----- 396 (493)
Q Consensus 324 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~-p-q~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~----- 396 (493)
+.+ ..... .++.+.+|+ + -.+++.+++ ++|||||.+|++|++++|+|+|++|+.
T Consensus 226 --------------~~~-~~~~~--~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 226 --------------LDD-SLQNK--EGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred --------------HHH-HHhhc--CCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 001 00111 134445777 4 457899999 999999999999999999999999985
Q ss_pred hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHH
Q 011099 397 AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEE 453 (493)
Q Consensus 397 ~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 453 (493)
.||..||..+ ++.|+|..+. +..++++.|.+++.+++.|++ .|++++++
T Consensus 287 ~~Q~~Na~~l-~~~g~~~~l~-----~~~~~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 287 GDQILNAESF-ERQGYASVLY-----EEDVTVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred chHHHHHHHH-HHCCCEEEcc-----hhcCCHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 5899999999 5999999975 377899999999999997753 15444433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=1.2e-22 Score=198.38 Aligned_cols=305 Identities=19% Similarity=0.238 Sum_probs=184.3
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchH
Q 011099 6 PHVALLASP-GMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 6 ~~vl~~~~p-~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (493)
|||++...+ +.||+...++||++| | ||+|+|++.......+... +....++....... ....+..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPEFLKPR----------FPVREIPGLGPIQE-NGRLDRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHHHhccc----------cCEEEccCceEecc-CCccchH
Confidence 789999888 669999999999999 7 8999999988543222222 22333332222111 1111211
Q ss_pred HHHHH------HHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhh
Q 011099 85 TQIAV------MMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQ 158 (493)
Q Consensus 85 ~~~~~------~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (493)
..+.. ........+.+.+++. +||+||+|. .+.+..+|+..|||++.+........
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~--------------- 128 (318)
T PF13528_consen 67 KTVRNNIRWLARLARRIRREIRWLREF--RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH--------------- 128 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc---------------
Confidence 11111 1122333444555555 999999996 55567899999999998765442110
Q ss_pred hhcccCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCC
Q 011099 159 EEHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAP 238 (493)
Q Consensus 159 ~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~ 238 (493)
+.. ..... .....+...+.... ....+...+.-++. ... +....
T Consensus 129 ------------~~~-~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~--------------~~~~~ 172 (318)
T PF13528_consen 129 ------------PNF-WLPWD-------QDFGRLIERYIDRY-HFPPADRRLALSFY-PPL--------------PPFFR 172 (318)
T ss_pred ------------ccC-Ccchh-------hhHHHHHHHhhhhc-cCCcccceecCCcc-ccc--------------ccccc
Confidence 000 00000 00000001111110 12223333333322 100 01113
Q ss_pred eEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCcccc
Q 011099 239 VYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSK-QRFIWVVRPPLDHDVFDS 317 (493)
Q Consensus 239 ~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~ 317 (493)
..++||+....... .+ . .+++.|+|+||..... .++++++..+ .++++. +....
T Consensus 173 ~~~~~p~~~~~~~~---~~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~------ 227 (318)
T PF13528_consen 173 VPFVGPIIRPEIRE---LP-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA------ 227 (318)
T ss_pred ccccCchhcccccc---cC-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc------
Confidence 66788876642211 00 1 1345899999985432 6677777777 455544 33321
Q ss_pred ccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCC--ChhhhcCCCCcccccccCCchHHHHHHHhCCceeeccc
Q 011099 318 YLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWA--PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL 395 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~--pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~ 395 (493)
.. ...|+.+.+|. +..++|..++ ++|+|||.||++|++++|+|+|++|.
T Consensus 228 ------------------~~---------~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~ 278 (318)
T PF13528_consen 228 ------------------DP---------RPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPR 278 (318)
T ss_pred ------------------cc---------cCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeC
Confidence 01 12378777775 5677999999 99999999999999999999999999
Q ss_pred --chhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHH
Q 011099 396 --YAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRI 438 (493)
Q Consensus 396 --~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~v 438 (493)
..+|..||+++ +++|+|..++ ..+++++.|+++|+++
T Consensus 279 ~~~~EQ~~~a~~l-~~~G~~~~~~-----~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 279 PGQDEQEYNARKL-EELGLGIVLS-----QEDLTPERLAEFLERL 317 (318)
T ss_pred CCCchHHHHHHHH-HHCCCeEEcc-----cccCCHHHHHHHHhcC
Confidence 78999999999 7999999976 3789999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.7e-21 Score=187.48 Aligned_cols=313 Identities=17% Similarity=0.191 Sum_probs=194.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCc-eEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNH-HATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (493)
+.|+++..++-||+.|.++|+++|.++ |+ +|.++.+....+ ...... .++.++.++....... ......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e---~~l~~~----~~~~~~~I~~~~~~~~-~~~~~~- 70 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLE---AFLVKQ----YGIEFELIPSGGLRRK-GSLKLL- 70 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEecccccce---eeeccc----cCceEEEEeccccccc-CcHHHH-
Confidence 458888889999999999999999999 99 577776654222 222222 2567777765443322 111111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEEC--CcchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhcc
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVD--LFGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHV 162 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D--~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (493)
... ...-.......++++++ +||+||.. +.+.++..+|..+|||++..-..
T Consensus 71 ~~~-~~~~~~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn------------------------ 123 (357)
T COG0707 71 KAP-FKLLKGVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN------------------------ 123 (357)
T ss_pred HHH-HHHHHHHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEecC------------------------
Confidence 111 11223444668888888 99999985 44555677999999998885432
Q ss_pred cCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCC--CeE
Q 011099 163 NQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKA--PVY 240 (493)
Q Consensus 163 ~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p--~~~ 240 (493)
..+|+. ...+.+....+..++...+. ..+ +++
T Consensus 124 ------~~~G~a-------------------------nk~~~~~a~~V~~~f~~~~~---------------~~~~~~~~ 157 (357)
T COG0707 124 ------AVPGLA-------------------------NKILSKFAKKVASAFPKLEA---------------GVKPENVV 157 (357)
T ss_pred ------CCcchh-------------------------HHHhHHhhceeeeccccccc---------------cCCCCceE
Confidence 222220 00011111112223222111 122 388
Q ss_pred EeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHH-HHHHHHHHHhCCCcEEEEEcCCCCCCcccccc
Q 011099 241 PVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQ-TMELAWGLEQSKQRFIWVVRPPLDHDVFDSYL 319 (493)
Q Consensus 241 ~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 319 (493)
.+|-..+.+... .+..-..+... .++++|+|..||++...-++ +.++...+.+ +..+++..+...
T Consensus 158 ~tG~Pvr~~~~~---~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--------- 223 (357)
T COG0707 158 VTGIPVRPEFEE---LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--------- 223 (357)
T ss_pred EecCcccHHhhc---cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---------
Confidence 888544432110 01111111111 15679999999987643322 3333444443 456666664331
Q ss_pred ccCCCCCcccccccccCCCchhHHhhhCCCc-eeeccCCCh-hhhcCCCCcccccccCCchHHHHHHHhCCceeecccc-
Q 011099 320 TAGSGALNTAEGALDYHYLPEGFLIRTRDVG-LVVPMWAPQ-PEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLY- 396 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~~~~~~pq-~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~- 396 (493)
.+.........| +.+.+|.++ .+++.-++ ++||++|++|+.|++++|+|+|.+|.-
T Consensus 224 -------------------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~ 282 (357)
T COG0707 224 -------------------LEELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPP 282 (357)
T ss_pred -------------------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCC
Confidence 123333333334 667788876 45788888 999999999999999999999999973
Q ss_pred ---hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhccc
Q 011099 397 ---AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEK 442 (493)
Q Consensus 397 ---~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 442 (493)
.||..||..+ ++.|.|..++ +..+|.+++.+.|.+++.++
T Consensus 283 ~~~~~Q~~NA~~l-~~~gaa~~i~-----~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 283 GADGHQEYNAKFL-EKAGAALVIR-----QSELTPEKLAELILRLLSNP 325 (357)
T ss_pred CccchHHHHHHHH-HhCCCEEEec-----cccCCHHHHHHHHHHHhcCH
Confidence 4899999999 7999999987 47789999999999999873
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.87 E-value=1.1e-20 Score=184.30 Aligned_cols=83 Identities=24% Similarity=0.292 Sum_probs=69.3
Q ss_pred ceeeccCCC--hhhhcCCCCcccccccCCchHHHHHHHhCCceeecccch--hcchhhHhhhhheeeeEEeeccCCCCCc
Q 011099 350 GLVVPMWAP--QPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYA--EQKMNATMLTEELRVAIRSKEVPSEKSV 425 (493)
Q Consensus 350 ~~~~~~~~p--q~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~Gvg~~~~~~~~~~~~ 425 (493)
|+.+.+|.| ..++|+.++ +||||||++|++|++++|+|+|++|..+ ||..||+.+ ++.|+|+.++ ..+
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~-----~~~ 301 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALE-----YKE 301 (321)
T ss_pred CEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcC-----hhh
Confidence 677779997 466788888 9999999999999999999999999965 899999999 6999999975 133
Q ss_pred cchHHHHHHHHHHhcccc
Q 011099 426 VERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 426 ~~~~~l~~ai~~vl~~~~ 443 (493)
+ ++.+++.++++++.
T Consensus 302 ~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 302 L---RLLEAILDIRNMKR 316 (321)
T ss_pred H---HHHHHHHhcccccc
Confidence 3 66667777777765
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.80 E-value=5.3e-17 Score=161.24 Aligned_cols=341 Identities=14% Similarity=0.124 Sum_probs=194.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
|+|+|+..+..||...++.|++.|.++ ||+|++++..... ....+.. .+++++.++...... .....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~---~~~~~~~----~g~~~~~~~~~~~~~-----~~~~~ 68 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGM---EARLVPK----AGIEFHFIPSGGLRR-----KGSLA 68 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCch---hhhcccc----CCCcEEEEeccCcCC-----CChHH
Confidence 679999988889999999999999999 9999999986411 0111111 145555554322211 11111
Q ss_pred HHHH--HHHHhhHHHHHHHHhcCCCCcEEEECCc--chhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhc
Q 011099 86 QIAV--MMHESIPALRSTISAMKYRPTALIVDLF--GTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEH 161 (493)
Q Consensus 86 ~~~~--~~~~~~~~l~~ll~~~~~~~DlVI~D~~--~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (493)
.+.. ..-.....+.+++++. +||+|++... .+.+..++...++|++......
T Consensus 69 ~l~~~~~~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------------- 124 (357)
T PRK00726 69 NLKAPFKLLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA---------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC----------------------
Confidence 1111 1122333556667765 9999998852 3345567888899987632100
Q ss_pred ccCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCCeEE
Q 011099 162 VNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAPVYP 241 (493)
Q Consensus 162 ~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 241 (493)
.++ ....+ ....++.++..+...+. .. +..++++
T Consensus 125 --------~~~-------------------~~~r~-----~~~~~d~ii~~~~~~~~--------~~------~~~~i~v 158 (357)
T PRK00726 125 --------VPG-------------------LANKL-----LARFAKKVATAFPGAFP--------EF------FKPKAVV 158 (357)
T ss_pred --------Ccc-------------------HHHHH-----HHHHhchheECchhhhh--------cc------CCCCEEE
Confidence 000 00000 00112222222211110 00 1335888
Q ss_pred eccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHH-HHHHHHhCCC--cEEEEEcCCCCCCccccc
Q 011099 242 VGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTME-LAWGLEQSKQ--RFIWVVRPPLDHDVFDSY 318 (493)
Q Consensus 242 vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~~~~~~~ 318 (493)
+|+........ ....-.+ +...++.++|++..|+.. ...... +.++++++.. .++|.++...
T Consensus 159 i~n~v~~~~~~---~~~~~~~-~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~-------- 223 (357)
T PRK00726 159 TGNPVREEILA---LAAPPAR-LAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGD-------- 223 (357)
T ss_pred ECCCCChHhhc---ccchhhh-ccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCc--------
Confidence 88665432110 0010011 111123446766656532 222333 3366665544 3445554321
Q ss_pred cccCCCCCcccccccccCCCchhHHhhhC-CCceeeccCC-ChhhhcCCCCcccccccCCchHHHHHHHhCCceeeccc-
Q 011099 319 LTAGSGALNTAEGALDYHYLPEGFLIRTR-DVGLVVPMWA-PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL- 395 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~-pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~- 395 (493)
.+.+.+... +-++.+.+|+ +..++++.++ ++|+|+|.++++||+++|+|+|++|.
T Consensus 224 --------------------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~ 281 (357)
T PRK00726 224 --------------------LEEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLP 281 (357)
T ss_pred --------------------HHHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCC
Confidence 122222222 1126667888 4578999999 99999999999999999999999997
Q ss_pred ---chhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 011099 396 ---YAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSL 472 (493)
Q Consensus 396 ---~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~ 472 (493)
.+||..|+..+ .+.|.|..++ ...++++.|+++|.++++|++ +++++.+ ..++ ..+.++..+.+
T Consensus 282 ~~~~~~~~~~~~~i-~~~~~g~~~~-----~~~~~~~~l~~~i~~ll~~~~---~~~~~~~---~~~~-~~~~~~~~~~~ 348 (357)
T PRK00726 282 HAADDHQTANARAL-VDAGAALLIP-----QSDLTPEKLAEKLLELLSDPE---RLEAMAE---AARA-LGKPDAAERLA 348 (357)
T ss_pred CCCcCcHHHHHHHH-HHCCCEEEEE-----cccCCHHHHHHHHHHHHcCHH---HHHHHHH---HHHh-cCCcCHHHHHH
Confidence 46899999998 5899999976 255689999999999999865 5443333 3333 22344444444
Q ss_pred HHHHHHH
Q 011099 473 SKIAHEC 479 (493)
Q Consensus 473 ~~~~~~~ 479 (493)
+.+.+.+
T Consensus 349 ~~~~~~~ 355 (357)
T PRK00726 349 DLIEELA 355 (357)
T ss_pred HHHHHHh
Confidence 4444433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.73 E-value=1.8e-15 Score=149.78 Aligned_cols=314 Identities=14% Similarity=0.136 Sum_probs=181.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQ 86 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 86 (493)
||++...+..||+...+.|++.|.++ ||+|++++...... ...... .++++..++...... ......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~ 67 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLE---ARLVPK----AGIPLHTIPVGGLRR-----KGSLKK 67 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcch---hhcccc----cCCceEEEEecCcCC-----CChHHH
Confidence 57888888889999999999999999 99999998763211 111111 145555555322211 111111
Q ss_pred HHHH--HHHhhHHHHHHHHhcCCCCcEEEECC--cchhHHHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhcc
Q 011099 87 IAVM--MHESIPALRSTISAMKYRPTALIVDL--FGTEAMAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHV 162 (493)
Q Consensus 87 ~~~~--~~~~~~~l~~ll~~~~~~~DlVI~D~--~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (493)
+... .......+..++++. +||+|++.. ..+.+..+|...|+|++......
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~----------------------- 122 (350)
T cd03785 68 LKAPFKLLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA----------------------- 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------------
Confidence 1111 122333566777776 999999864 24445668899999987532100
Q ss_pred cCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCCeEEe
Q 011099 163 NQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAPVYPV 242 (493)
Q Consensus 163 ~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~~~~v 242 (493)
.++ ....+ ..+.++.+++.+....+. . +..+++.+
T Consensus 123 -------~~~-------------------~~~~~-----~~~~~~~vi~~s~~~~~~--------~------~~~~~~~i 157 (350)
T cd03785 123 -------VPG-------------------LANRL-----LARFADRVALSFPETAKY--------F------PKDKAVVT 157 (350)
T ss_pred -------Ccc-------------------HHHHH-----HHHhhCEEEEcchhhhhc--------C------CCCcEEEE
Confidence 000 00000 112244555544322221 0 12247778
Q ss_pred ccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCcccccccc
Q 011099 243 GPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSS-KQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTA 321 (493)
Q Consensus 243 Gp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 321 (493)
|......... .... .+.+...+++++|++..|+...... +.+.+++..+...+..+++.++...
T Consensus 158 ~n~v~~~~~~---~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~----------- 222 (350)
T cd03785 158 GNPVREEILA---LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD----------- 222 (350)
T ss_pred CCCCchHHhh---hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-----------
Confidence 8654432110 1111 1122222344566666666532111 1122333334322334555554331
Q ss_pred CCCCCcccccccccCCCchhHHhhhC--CCceeeccCC-ChhhhcCCCCcccccccCCchHHHHHHHhCCceeeccc---
Q 011099 322 GSGALNTAEGALDYHYLPEGFLIRTR--DVGLVVPMWA-PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL--- 395 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~~~~~-pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~--- 395 (493)
.+.+.+... ..++.+.+|+ +..++|+.++ ++|+|+|.+|+.||+++|+|+|++|.
T Consensus 223 -----------------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~ 283 (350)
T cd03785 223 -----------------LEEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYA 283 (350)
T ss_pred -----------------HHHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCC
Confidence 112222221 2478888988 5677999999 89999999999999999999999986
Q ss_pred -chhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 396 -YAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 396 -~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
..+|..|+..+ .+.|.|..++ ....+.+++.++|++++.+++
T Consensus 284 ~~~~~~~~~~~l-~~~g~g~~v~-----~~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 284 ADDHQTANARAL-VKAGAAVLIP-----QEELTPERLAAALLELLSDPE 326 (350)
T ss_pred CCCcHHHhHHHH-HhCCCEEEEe-----cCCCCHHHHHHHHHHHhcCHH
Confidence 35788999998 5889998875 134689999999999998754
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.70 E-value=2.1e-15 Score=150.24 Aligned_cols=352 Identities=12% Similarity=0.069 Sum_probs=192.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
++|+|..-++.||++|. +|+++|+++ |++|+|++.... .++..+++. .+++..++.... . +...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~-~~~~~~~g~gg~--~m~~~g~~~-----~~~~~~l~v~G~----~---~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEH-YPNARFIGVAGP--RMAAEGCEV-----LYSMEELSVMGL----R---EVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhc-CCCcEEEEEccH--HHHhCcCcc-----ccChHHhhhccH----H---HHHH
Confidence 57899998888999999 999999999 999999986631 334444432 233333332111 0 1112
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEE-ECCcchhHH--HHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhcc
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALI-VDLFGTEAM--AVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHV 162 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI-~D~~~~~a~--~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (493)
.+.. .......+.+++++. +||+|| .|...+... .+|+.+|||++.+. +| ..
T Consensus 70 ~~~~-~~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P-----------~~---------- 124 (385)
T TIGR00215 70 RLGR-LLKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SP-----------QV---------- 124 (385)
T ss_pred HHHH-HHHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CC-----------cH----------
Confidence 2222 222333666777776 999999 454343322 38899999988753 21 00
Q ss_pred cCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCCeEEe
Q 011099 163 NQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAPVYPV 242 (493)
Q Consensus 163 ~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~~~~v 242 (493)
+.+.+ .+ .+.+. +.++.+++.+ + .+... +.. ..-+..+|
T Consensus 125 -----waw~~--------------~~----~r~l~------~~~d~v~~~~-~-~e~~~---~~~-------~g~~~~~v 163 (385)
T TIGR00215 125 -----WAWRK--------------WR----AKKIE------KATDFLLAIL-P-FEKAF---YQK-------KNVPCRFV 163 (385)
T ss_pred -----hhcCc--------------ch----HHHHH------HHHhHhhccC-C-CcHHH---HHh-------cCCCEEEE
Confidence 00000 00 00010 1111122211 1 11111 111 11256678
Q ss_pred ccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCcccc
Q 011099 243 GPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQS-----KQRFIWVVRPPLDHDVFDS 317 (493)
Q Consensus 243 Gp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~ 317 (493)
|....+..........+..+-+.-.+++++|.+..||....-...+..++++++.+ +.++++.......
T Consensus 164 GnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~------ 237 (385)
T TIGR00215 164 GHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR------ 237 (385)
T ss_pred CCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh------
Confidence 85443321100001111111122223556888888886442122344555554443 2245444422110
Q ss_pred ccccCCCCCcccccccccCCCchhHHhhhC-CCceeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeec---
Q 011099 318 YLTAGSGALNTAEGALDYHYLPEGFLIRTR-DVGLVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVW--- 393 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~--- 393 (493)
. ..+ +.+..... +..+....+ +..+++..++ ++|+-+|..|+ |++++|+|+|++
T Consensus 238 -------~----------~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 238 -------R----------LQF-EQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRM 295 (385)
T ss_pred -------H----------HHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcC
Confidence 0 000 11111111 112222222 3456888899 99999999887 999999999999
Q ss_pred -ccch---------hcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhccc----chHHHHHHHHHHHHHHH
Q 011099 394 -PLYA---------EQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEK----QGHAIRNRVEELKHSAQ 459 (493)
Q Consensus 394 -P~~~---------DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~----~~~~~r~~a~~l~~~~~ 459 (493)
|+.. +|..|+..++ ..++...+- +..+|++.|.+.+.++|.|+ + ++++..+--+.++
T Consensus 296 ~pl~~~~~~~~~~~~~~~~~nil~-~~~~~pel~-----q~~~~~~~l~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~ 366 (385)
T TIGR00215 296 KPLTFLIARRLVKTDYISLPNILA-NRLLVPELL-----QEECTPHPLAIALLLLLENGLKAYK---EMHRERQFFEELR 366 (385)
T ss_pred CHHHHHHHHHHHcCCeeeccHHhc-CCccchhhc-----CCCCCHHHHHHHHHHHhcCCcccHH---HHHHHHHHHHHHH
Confidence 8742 2888999984 888888864 47799999999999999987 5 4444444444444
Q ss_pred HHhhcCCChHHHHHHHH
Q 011099 460 KALINGGSSYNSLSKIA 476 (493)
Q Consensus 460 ~a~~~~g~~~~~~~~~~ 476 (493)
+.+.++|++.+..+.++
T Consensus 367 ~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 367 QRIYCNADSERAAQAVL 383 (385)
T ss_pred HHhcCCCHHHHHHHHHh
Confidence 44566777766655544
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.67 E-value=4.2e-14 Score=139.89 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=66.7
Q ss_pred ChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccc---hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHH
Q 011099 358 PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLY---AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMM 434 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~a 434 (493)
+-.+++..++ ++|+++|.+++.||+++|+|+|+.|+. .+|..|+..+ ++.|.|..++ ....+.++|.++
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~-----~~~~~~~~l~~~ 314 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIR-----QKELLPEKLLEA 314 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEe-----cccCCHHHHHHH
Confidence 5678899999 999999988999999999999999873 4788898888 5889998865 245679999999
Q ss_pred HHHHhcccc
Q 011099 435 VRRIVAEKQ 443 (493)
Q Consensus 435 i~~vl~~~~ 443 (493)
+++++.|++
T Consensus 315 i~~ll~~~~ 323 (348)
T TIGR01133 315 LLKLLLDPA 323 (348)
T ss_pred HHHHHcCHH
Confidence 999998765
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.61 E-value=3.4e-13 Score=135.06 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhC
Q 011099 269 HESVIYVSFGSGGTLSSKQTMELAWGLEQS-KQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTR 347 (493)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 347 (493)
+++++++..|+.... ..+..+++++... +.+++++.+.+. .+-+.+.+...
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~--------------------------~~~~~l~~~~~ 252 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE--------------------------ALKQSLEDLQE 252 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH--------------------------HHHHHHHHHHh
Confidence 455777777886432 2356677777654 346666554221 01112222111
Q ss_pred --CCceeeccCCChh-hhcCCCCcccccccCCchHHHHHHHhCCceeec-ccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 348 --DVGLVVPMWAPQP-EILAHPSVGGFLTHCGWNSTMESIVNGVPMIVW-PLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 348 --~~~~~~~~~~pq~-~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
+.++.+.+|+++. +++..++ ++|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|....
T Consensus 253 ~~~~~v~~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~~------ 323 (380)
T PRK13609 253 TNPDALKVFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVIR------ 323 (380)
T ss_pred cCCCcEEEEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEEC------
Confidence 1368878999874 7999999 899999988999999999999985 6777788899888 6889887642
Q ss_pred CccchHHHHHHHHHHhcccc
Q 011099 424 SVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~ 443 (493)
+.+++.++|.++++|++
T Consensus 324 ---~~~~l~~~i~~ll~~~~ 340 (380)
T PRK13609 324 ---DDEEVFAKTEALLQDDM 340 (380)
T ss_pred ---CHHHHHHHHHHHHCCHH
Confidence 56899999999998764
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.60 E-value=5.5e-14 Score=133.69 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhC-
Q 011099 271 SVIYVSFGSGGTLSSKQTMELAWGLEQS--KQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTR- 347 (493)
Q Consensus 271 ~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~- 347 (493)
+.|+|+||.... ......++++++.. +.++.++++.... ..+.+.+...
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~--------------------------~~~~l~~~~~~ 222 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP--------------------------NLDELKKFAKE 222 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc--------------------------CHHHHHHHHHh
Confidence 478999986432 22445666777664 3456677754321 1223333222
Q ss_pred CCceeeccCCChh-hhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHh
Q 011099 348 DVGLVVPMWAPQP-EILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATM 405 (493)
Q Consensus 348 ~~~~~~~~~~pq~-~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 405 (493)
.+|+.+..++++. +++..++ ++||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 223 ~~~i~~~~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 223 YPNIILFIDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCCEEEEeCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 3478888999985 7999999 9999999 9999999999999999999999999975
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.53 E-value=1e-12 Score=121.73 Aligned_cols=336 Identities=17% Similarity=0.163 Sum_probs=189.9
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCC-CCCCCCC
Q 011099 5 KPHVALLASP--GMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDI-SGIVCTD 80 (493)
Q Consensus 5 ~~~vl~~~~p--~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~-~~~~~~~ 80 (493)
.+||+|++.- +-||+.....||.+|.+.. |.+|++++...- ..++.. ..+++++.+|.... ++.....
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~-----~~~F~~---~~gVd~V~LPsl~k~~~G~~~~ 80 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPP-----AGGFPG---PAGVDFVKLPSLIKGDNGEYGL 80 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCc-----cCCCCC---cccCceEecCceEecCCCceee
Confidence 4699999965 4599999999999999854 899999998753 222222 25899999985322 2110111
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHH-H----HHH--cCCeEEEEecchHHHHHHHhhhcchh
Q 011099 81 ASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMA-V----ADE--FEMLKYMFIASNAWFVAVTIYAPALD 153 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~-~----A~~--lgIP~v~~~~~~~~~~~~~~~~p~~~ 153 (493)
.+.-..+....+.-...+....+.+ +||++|+|.+=++... + ++. .+-+++.
T Consensus 81 ~d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL------------------- 139 (400)
T COG4671 81 VDLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVL------------------- 139 (400)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccchhhhhhHHHHHHhhcCCccee-------------------
Confidence 1111113334444455666777777 9999999985443110 0 000 0100000
Q ss_pred hhhhhhhcccCCCcccCCCCCCCCcccccccccCCCCc-chHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhc
Q 011099 154 KKVLQEEHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGP-MYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLR 232 (493)
Q Consensus 154 ~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 232 (493)
..+++.......... .....++..+ +-.+.+++-..+++..+ ..... +.
T Consensus 140 -----------------------~lr~i~D~p~~~~~~w~~~~~~~~I~--r~yD~V~v~GdP~f~d~----~~~~~-~~ 189 (400)
T COG4671 140 -----------------------GLRSIRDIPQELEADWRRAETVRLIN--RFYDLVLVYGDPDFYDP----LTEFP-FA 189 (400)
T ss_pred -----------------------ehHhhhhchhhhccchhhhHHHHHHH--HhheEEEEecCccccCh----hhcCC-cc
Confidence 000010000000000 0011111111 12344444443332211 00000 00
Q ss_pred cCCCCCeEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEEcCCCC
Q 011099 233 RVAKAPVYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQ-SKQRFIWVVRPPLD 311 (493)
Q Consensus 233 ~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~ 311 (493)
......+.|+|.+..+.+... .+ |... +++.-|+||-|.- ....+.+...+.|-.. .+-+-.|.+-.
T Consensus 190 ~~i~~k~~ytG~vq~~~~~~~--~p-----~~~~-pE~~~Ilvs~GGG-~dG~eLi~~~l~A~~~l~~l~~~~~ivt--- 257 (400)
T COG4671 190 PAIRAKMRYTGFVQRSLPHLP--LP-----PHEA-PEGFDILVSVGGG-ADGAELIETALAAAQLLAGLNHKWLIVT--- 257 (400)
T ss_pred HhhhhheeEeEEeeccCcCCC--CC-----CcCC-CccceEEEecCCC-hhhHHHHHHHHHHhhhCCCCCcceEEEe---
Confidence 000114899999933211110 11 1111 4555788888863 2344555555554433 22221343311
Q ss_pred CCccccccccCCCCCcccccccccCCCchhHHhhh-----CCCceeeccCCCh-hhhcCCCCcccccccCCchHHHHHHH
Q 011099 312 HDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRT-----RDVGLVVPMWAPQ-PEILAHPSVGGFLTHCGWNSTMESIV 385 (493)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~~~~~~~~pq-~~lL~~~~~~~~i~HgG~gs~~eal~ 385 (493)
| ..+|....++. +.+++.+..|-.+ .+++.-+. ++|+-||+||+||-|+
T Consensus 258 -------------G----------P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs 312 (400)
T COG4671 258 -------------G----------PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILS 312 (400)
T ss_pred -------------C----------CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHh
Confidence 2 55666544333 2467887788654 66888888 9999999999999999
Q ss_pred hCCceeecccc---hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhccc
Q 011099 386 NGVPMIVWPLY---AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEK 442 (493)
Q Consensus 386 ~GvP~l~~P~~---~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 442 (493)
+|||.+++|.. .+|-.-|.|+ +++|+.-.+- .+.++++.++++|...+..+
T Consensus 313 ~~k~aLivPr~~p~eEQliRA~Rl-~~LGL~dvL~-----pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 313 FGKPALIVPRAAPREEQLIRAQRL-EELGLVDVLL-----PENLTPQNLADALKAALARP 366 (400)
T ss_pred CCCceEEeccCCCcHHHHHHHHHH-HhcCcceeeC-----cccCChHHHHHHHHhcccCC
Confidence 99999999986 4999999999 7999988874 37789999999999998743
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.53 E-value=1.1e-12 Score=131.58 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=67.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
|+|+|..-++-||++|.+ ++++|+++ ++++.++..... ..+..++.. .+.+..++.... .+...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~-~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~l~~~g~-------~~~~~ 65 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKAR-APNLEFVGVGGP--RMQAAGCES-----LFDMEELAVMGL-------VEVLP 65 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhc-CCCcEEEEEccH--HHHhCCCcc-----ccCHHHhhhccH-------HHHHH
Confidence 679999999999999999 99999998 788888875431 233333221 222222221110 01111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEE-CCcchhH--HHHHHHcCCeEEEE
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALIV-DLFGTEA--MAVADEFEMLKYMF 135 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI~-D~~~~~a--~~~A~~lgIP~v~~ 135 (493)
.+. ........+.++++++ +||+|++ ++...+. ...|.+.|||++.+
T Consensus 66 ~~~-~~~~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 66 RLP-RLLKIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred HHH-HHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 111 1233445677788887 9999885 3322233 33577889998765
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.50 E-value=3.2e-12 Score=128.12 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=106.6
Q ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhh
Q 011099 269 HESVIYVSFGSGGTLSSKQTMELAWGLEQS--KQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRT 346 (493)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 346 (493)
++++|++..|+.+. ...+..+++++... +.+++++.+.+ ..+-+.+.+..
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~--------------------------~~l~~~l~~~~ 252 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS--------------------------KELKRSLTAKF 252 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC--------------------------HHHHHHHHHHh
Confidence 45688888898752 13455555554322 34555555322 11112222222
Q ss_pred C-CCceeeccCCChh-hhcCCCCcccccccCCchHHHHHHHhCCceeec-ccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 347 R-DVGLVVPMWAPQP-EILAHPSVGGFLTHCGWNSTMESIVNGVPMIVW-PLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 347 ~-~~~~~~~~~~pq~-~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
. ..++.+.+|+++. +++..++ ++|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|....
T Consensus 253 ~~~~~v~~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~------ 323 (391)
T PRK13608 253 KSNENVLILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD------ 323 (391)
T ss_pred ccCCCeEEEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC------
Confidence 1 2367777999764 6899999 999998889999999999999998 7777778999998 6999998742
Q ss_pred CccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011099 424 SVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECE 480 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 480 (493)
+.+++.++|.++++|++ . .+++++.+++. .+..+....++.+++.+.
T Consensus 324 ---~~~~l~~~i~~ll~~~~---~---~~~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 324 ---TPEEAIKIVASLTNGNE---Q---LTNMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred ---CHHHHHHHHHHHhcCHH---H---HHHHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 67889999999998754 2 23344444442 223444444445544443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.43 E-value=1.1e-14 Score=128.02 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=72.8
Q ss_pred CceeeccCCC-hhhhcCCCCcccccccCCchHHHHHHHhCCceeecccch----hcchhhHhhhhheeeeEEeeccCCCC
Q 011099 349 VGLVVPMWAP-QPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYA----EQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 349 ~~~~~~~~~p-q~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~----DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.++.+.+|.+ ..+++..++ ++|||||.||++|++++|+|+|++|... ||..||..+ ++.|+|..+. .
T Consensus 55 ~~v~~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~-----~ 126 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLD-----E 126 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSE-----C
T ss_pred CcEEEEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccC-----c
Confidence 3688889999 788999999 9999999999999999999999999988 999999999 5999999976 2
Q ss_pred CccchHHHHHHHHHHhcccc
Q 011099 424 SVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~ 443 (493)
...+.++|.++|.+++.++.
T Consensus 127 ~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 127 SELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp CC-SCCCHHHHHHCHCCCHH
T ss_pred ccCCHHHHHHHHHHHHcCcH
Confidence 56678999999999998754
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.41 E-value=3.8e-11 Score=120.17 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=67.4
Q ss_pred ceeeccCCCh-hhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcc-hhhHhhhhheeeeEEeeccCCCCCccc
Q 011099 350 GLVVPMWAPQ-PEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQK-MNATMLTEELRVAIRSKEVPSEKSVVE 427 (493)
Q Consensus 350 ~~~~~~~~pq-~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~-~na~~v~e~~Gvg~~~~~~~~~~~~~~ 427 (493)
++.+.+|+++ .+++..++ ++|+.+|-+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|..+ -+
T Consensus 266 ~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~---------~~ 333 (382)
T PLN02605 266 PVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS---------ES 333 (382)
T ss_pred CeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec---------CC
Confidence 5667799885 56888888 9999999999999999999999998766665 788888 588998763 27
Q ss_pred hHHHHHHHHHHhcc
Q 011099 428 RGEIEMMVRRIVAE 441 (493)
Q Consensus 428 ~~~l~~ai~~vl~~ 441 (493)
+++|.++|.+++.+
T Consensus 334 ~~~la~~i~~ll~~ 347 (382)
T PLN02605 334 PKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHHcC
Confidence 79999999999987
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.35 E-value=3.3e-10 Score=113.18 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=61.8
Q ss_pred eeeccCC-ChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhhe----eeeEEeeccCCCCCc
Q 011099 351 LVVPMWA-PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEEL----RVAIRSKEVPSEKSV 425 (493)
Q Consensus 351 ~~~~~~~-pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~----Gvg~~~~~~~~~~~~ 425 (493)
+.+..+. +-.+++..++ ++|+-+|..| .|+...|+|+|++|.-..|. |+... ++. |.+..+. .
T Consensus 281 ~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~-------~ 348 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA-------S 348 (396)
T ss_pred eEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC-------C
Confidence 3333443 4467899999 9999999766 99999999999999877786 88765 453 6666653 2
Q ss_pred cchHHHHHHHHHHhcccc
Q 011099 426 VERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 426 ~~~~~l~~ai~~vl~~~~ 443 (493)
.+.+.|.+++.+++.|++
T Consensus 349 ~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 349 KNPEQAAQVVRQLLADPE 366 (396)
T ss_pred CCHHHHHHHHHHHHcCHH
Confidence 355999999999998764
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.33 E-value=1.2e-12 Score=111.26 Aligned_cols=118 Identities=12% Similarity=0.136 Sum_probs=77.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCC-CCCCCCCCCcchHHH
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCI-DISGIVCTDASLVTQ 86 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~~~ 86 (493)
|+|++.|+.||++|+++||++|++| ||+|++++++.+.+.+... +++|..++.. .. +........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~~~----~~~~~~~~~ 66 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDFRERVEAA---------GLEFVPIPGDSRL----PRSLEPLAN 66 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGGHHHHHHT---------T-EEEESSSCGGG----GHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccceeccccc---------CceEEEecCCcCc----Ccccchhhh
Confidence 7899999999999999999999999 9999999999987777665 5666766643 11 110011111
Q ss_pred HHHHHHH--hhHHHHHHHHhc----------CCCCcEEEECCcchhHHHHHHHcCCeEEEEecch
Q 011099 87 IAVMMHE--SIPALRSTISAM----------KYRPTALIVDLFGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 87 ~~~~~~~--~~~~l~~ll~~~----------~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
+...... ....+.+.+++. ....|+++.+.....+..+||++|||++.....+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 67 LRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 1111111 122222222221 1267888888888888999999999999987665
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.18 E-value=9e-08 Score=94.60 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=62.1
Q ss_pred CceeeccCCChhh---hcCCCCcccccccCC----chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLTHCG----WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++.+.+|+++.+ ++..++ ++|+.+. .+++.||+++|+|+|+.+.. .+...+ ++.+.|...+
T Consensus 247 ~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~---- 315 (364)
T cd03814 247 PNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVE---- 315 (364)
T ss_pred CcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcC----
Confidence 3688889998765 688888 7776654 47899999999999988754 355555 5667887753
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.++|.+++.+++
T Consensus 316 ---~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 316 ---PGDAEAFAAALAALLADPE 334 (364)
T ss_pred ---CCCHHHHHHHHHHHHcCHH
Confidence 3467889999999998765
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.13 E-value=7.4e-08 Score=99.14 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCc
Q 011099 272 VIYVSFGSGGTLSSKQTMELAWGLEQSK-QRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVG 350 (493)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 350 (493)
.+++..|+... ...+..++++++... .++++ ++.+ ..-+.+.+...+.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i-vG~G---------------------------~~~~~l~~~~~~~~ 313 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAF-VGDG---------------------------PYREELEKMFAGTP 313 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-EeCC---------------------------hHHHHHHHHhccCC
Confidence 44555687643 233666777777664 44443 3321 11123333344447
Q ss_pred eeeccCCChhh---hcCCCCcccccccCC----chHHHHHHHhCCceeecccchhcchhhHhhhhh---eeeeEEeeccC
Q 011099 351 LVVPMWAPQPE---ILAHPSVGGFLTHCG----WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEE---LRVAIRSKEVP 420 (493)
Q Consensus 351 ~~~~~~~pq~~---lL~~~~~~~~i~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~---~Gvg~~~~~~~ 420 (493)
+.+.+++++.+ ++..++ +||.-.. -+++.||+++|+|+|+.... .....+ ++ -+.|...+
T Consensus 314 V~f~G~v~~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~--- 383 (465)
T PLN02871 314 TVFTGMLQGDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYT--- 383 (465)
T ss_pred eEEeccCCHHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeC---
Confidence 88889998655 677788 6664332 34789999999999987643 233333 34 56777753
Q ss_pred CCCCccchHHHHHHHHHHhcccc-hHHHHHHHHH
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ-GHAIRNRVEE 453 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 453 (493)
.-+.+++.++|.++++|+. ..++.+++++
T Consensus 384 ----~~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 384 ----PGDVDDCVEKLETLLADPELRERMGAAARE 413 (465)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 2367999999999998754 2334444443
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=1.5e-08 Score=91.60 Aligned_cols=284 Identities=17% Similarity=0.166 Sum_probs=171.4
Q ss_pred CEEEEEcCC----CccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCc
Q 011099 6 PHVALLASP----GMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDA 81 (493)
Q Consensus 6 ~~vl~~~~p----~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 81 (493)
|||+|.+-+ +.||+...+.||++|.++ |..++|++..+..+.+.+.. . ++.+. .. . +.
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e~~~~~~~--~-----~f~~~--------~~-~-~~ 62 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQDIEAIIHKVY--E-----GFKVL--------EG-R-GN 62 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccchhhhhhhhh--h-----hccce--------ee-e-cc
Confidence 688998866 459999999999999999 99999999886433222210 0 11100 00 0 00
Q ss_pred chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHH---HHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhh
Q 011099 82 SLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAM---AVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQ 158 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~---~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (493)
+ .+++. ++|++|.|.....+- .+..+.|.|.+.+..-....+.
T Consensus 63 n------------------~ik~~--k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~-------------- 108 (318)
T COG3980 63 N------------------LIKEE--KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK-------------- 108 (318)
T ss_pred c------------------ccccc--cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh--------------
Confidence 0 44444 999999999888764 4778999998887432110000
Q ss_pred hhcccCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCC
Q 011099 159 EEHVNQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAP 238 (493)
Q Consensus 159 ~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~ 238 (493)
.. ....+...+ + +..+. ..|.
T Consensus 109 -------------------d~----------d~ivN~~~~-------a-----~~~y~------------------~v~~ 129 (318)
T COG3980 109 -------------------DN----------DLIVNAILN-------A-----NDYYG------------------LVPN 129 (318)
T ss_pred -------------------hh----------Hhhhhhhhc-------c-----hhhcc------------------ccCc
Confidence 00 000000000 0 00000 1222
Q ss_pred --eEEeccccCCCCCCCCcccccccccccCCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccc
Q 011099 239 --VYPVGPLARSVASSPVSGSHVVLDWLDKQPHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFD 316 (493)
Q Consensus 239 --~~~vGp~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 316 (493)
-++.||=+..-.+.-....++ -+.. +..-|+|++|-. ......-+++..|++....+-.+++...
T Consensus 130 k~~~~lGp~y~~lr~eF~~~r~~---~~~r--~~r~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~~------ 196 (318)
T COG3980 130 KTRYYLGPGYAPLRPEFYALREE---NTER--PKRDILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSSN------ 196 (318)
T ss_pred ceEEEecCCceeccHHHHHhHHH---Hhhc--chheEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCCC------
Confidence 466776655421100001111 1212 333688999852 2234566888888888866666665221
Q ss_pred cccccCCCCCcccccccccCCCchhHHhhhC-CCceeeccCCC-hhhhcCCCCcccccccCCchHHHHHHHhCCceeecc
Q 011099 317 SYLTAGSGALNTAEGALDYHYLPEGFLIRTR-DVGLVVPMWAP-QPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWP 394 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~p-q~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P 394 (493)
.. +.....+.. .+++...-... -..|+..++ +.|+-+| .|+.|++.-|+|.+++|
T Consensus 197 -------------------p~-l~~l~k~~~~~~~i~~~~~~~dma~LMke~d--~aI~AaG-stlyEa~~lgvP~l~l~ 253 (318)
T COG3980 197 -------------------PT-LKNLRKRAEKYPNINLYIDTNDMAELMKEAD--LAISAAG-STLYEALLLGVPSLVLP 253 (318)
T ss_pred -------------------cc-hhHHHHHHhhCCCeeeEecchhHHHHHHhcc--hheeccc-hHHHHHHHhcCCceEEe
Confidence 11 223333332 33454434443 566888999 9999887 69999999999999999
Q ss_pred cchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 395 LYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 395 ~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
+...|---|... +.+|+-..++ -.++.......+.++.+|..
T Consensus 254 ~a~NQ~~~a~~f-~~lg~~~~l~------~~l~~~~~~~~~~~i~~d~~ 295 (318)
T COG3980 254 LAENQIATAKEF-EALGIIKQLG------YHLKDLAKDYEILQIQKDYA 295 (318)
T ss_pred eeccHHHHHHHH-HhcCchhhcc------CCCchHHHHHHHHHhhhCHH
Confidence 999999999999 6999888865 23666777777778888764
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.01 E-value=9e-07 Score=87.17 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=58.4
Q ss_pred CceeeccCCChhh---hcCCCCcccccc----cCCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLT----HCGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~----HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
.++.+.+|+++.+ ++..++ ++|+ ..|+ .++.||+++|+|+|+.+. ..+...+ +..+.|...+
T Consensus 243 ~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~--- 312 (359)
T cd03823 243 PRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFP--- 312 (359)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEEC---
Confidence 4788889997655 578888 5552 2333 479999999999998654 4455665 4555677653
Q ss_pred CCCCccchHHHHHHHHHHhcccc
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.+++.++++++.
T Consensus 313 ----~~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 313 ----PGDAEDLAAALERLIDDPD 331 (359)
T ss_pred ----CCCHHHHHHHHHHHHhChH
Confidence 2357999999999998754
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.00 E-value=1e-06 Score=88.63 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=59.8
Q ss_pred CceeeccCCChhh---hcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++.+.+|+|+.+ ++..++ ++++. +--.++.||+++|+|+|+-... .....+ ++.+.|...+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~---- 351 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVD---- 351 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeC----
Confidence 4788889999866 478888 66643 2236899999999999987653 344555 5666787753
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.++|.+++.+++
T Consensus 352 ---~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 352 ---PRDPEALAAALRRLLTDPA 370 (398)
T ss_pred ---CCCHHHHHHHHHHHHhCHH
Confidence 2368999999999998754
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.95 E-value=7.7e-07 Score=88.47 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCceeeccCCChhh---hcCCCCcccccccCC---------chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEE
Q 011099 348 DVGLVVPMWAPQPE---ILAHPSVGGFLTHCG---------WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIR 415 (493)
Q Consensus 348 ~~~~~~~~~~pq~~---lL~~~~~~~~i~HgG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~ 415 (493)
..++.+.+++++.+ ++..++ ++|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceE
Confidence 34788889998765 577788 5553222 234799999999999988765433 32 23356666
Q ss_pred eeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 416 SKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.+ .-+.++++++|.+++.|+.
T Consensus 347 ~~-------~~~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 347 VP-------PGDPEALAAAILELLDDPE 367 (394)
T ss_pred eC-------CCCHHHHHHHHHHHHhChH
Confidence 43 2378999999999997754
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.94 E-value=1.6e-06 Score=85.83 Aligned_cols=80 Identities=9% Similarity=0.136 Sum_probs=57.4
Q ss_pred CceeeccCCChhh---hcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++.+.+++|+.+ ++..++ ++|.. +..+++.||+++|+|+|+... ...+..+ ++.+.|...+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~---- 327 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFP---- 327 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeC----
Confidence 4788889998765 577888 55533 334789999999999998654 4455665 4656777754
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
. -+. ++.+++.+++++++
T Consensus 328 --~-~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 328 --P-GDE-ALAEALLRLLQDPE 345 (374)
T ss_pred --C-CCH-HHHHHHHHHHhChH
Confidence 1 122 89999999998764
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.86 E-value=4.8e-06 Score=82.94 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=60.1
Q ss_pred ceeeccCCCh-hhhcCCCCcccccc----cCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCC
Q 011099 350 GLVVPMWAPQ-PEILAHPSVGGFLT----HCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKS 424 (493)
Q Consensus 350 ~~~~~~~~pq-~~lL~~~~~~~~i~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~ 424 (493)
++.+.++.++ .+++..++ ++|. -|.-.++.||+++|+|+|+... ...+..+ ++-..|...+
T Consensus 254 ~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~------- 319 (371)
T cd04962 254 DVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVD------- 319 (371)
T ss_pred eEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcC-------
Confidence 5766677764 55788888 5552 2334599999999999998644 3455555 4545676643
Q ss_pred ccchHHHHHHHHHHhcccc-hHHHHHHHHHH
Q 011099 425 VVERGEIEMMVRRIVAEKQ-GHAIRNRVEEL 454 (493)
Q Consensus 425 ~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l 454 (493)
.-+.+++.+++.++++++. ..++++++++.
T Consensus 320 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 320 VGDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 2367899999999998754 23344444443
No 53
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.86 E-value=1.1e-05 Score=81.83 Aligned_cols=93 Identities=6% Similarity=0.048 Sum_probs=61.5
Q ss_pred ceeeccCCChhh---hcCCCCcccccccCCc------hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 350 GLVVPMWAPQPE---ILAHPSVGGFLTHCGW------NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 350 ~~~~~~~~pq~~---lL~~~~~~~~i~HgG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
++.+.+|+|+.+ ++..+++.++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|...+
T Consensus 285 ~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~--- 356 (412)
T PRK10307 285 NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVE--- 356 (412)
T ss_pred ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeC---
Confidence 688889998754 6888886555555432 246899999999999865431 122233 3 5677653
Q ss_pred CCCCccchHHHHHHHHHHhcccc-hHHHHHHHHHH
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ-GHAIRNRVEEL 454 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l 454 (493)
.-+.++++++|.++++++. ..++++++++.
T Consensus 357 ----~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 387 (412)
T PRK10307 357 ----PESVEALVAAIAALARQALLRPKLGTVAREY 387 (412)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 2367999999999998753 23445554443
No 54
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.84 E-value=4.6e-07 Score=90.23 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=56.8
Q ss_pred CceeeccCCCh---hhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCc
Q 011099 349 VGLVVPMWAPQ---PEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSV 425 (493)
Q Consensus 349 ~~~~~~~~~pq---~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~ 425 (493)
.++.+.+.+++ ..++..++ ++|+-.|. .+.||+++|+|+|.++-.++++. +. ..|.+..+.
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~-~~g~~~lv~-------- 318 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TV-EAGTNKLVG-------- 318 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HH-hcCceEEeC--------
Confidence 35666666654 45677888 88987764 47999999999999976555552 21 346665532
Q ss_pred cchHHHHHHHHHHhcccc
Q 011099 426 VERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 426 ~~~~~l~~ai~~vl~~~~ 443 (493)
.+.++|.+++.+++.++.
T Consensus 319 ~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 319 TDKENITKAAKRLLTDPD 336 (365)
T ss_pred CCHHHHHHHHHHHHhChH
Confidence 377999999999998765
No 55
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.84 E-value=2e-06 Score=87.50 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=54.7
Q ss_pred hhhcCCCCcccccc--c--CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHH
Q 011099 360 PEILAHPSVGGFLT--H--CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMV 435 (493)
Q Consensus 360 ~~lL~~~~~~~~i~--H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai 435 (493)
..++..+++ +|+. . +|..++.||+++|+|+|+-|..+++......+ .+.|++.... +.++|+++|
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~---------d~~~La~~l 382 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE---------DAEDLAKAV 382 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC---------CHHHHHHHH
Confidence 456777883 2442 1 33345999999999999999988888888776 4667766542 678999999
Q ss_pred HHHhcccc
Q 011099 436 RRIVAEKQ 443 (493)
Q Consensus 436 ~~vl~~~~ 443 (493)
.++++|++
T Consensus 383 ~~ll~~~~ 390 (425)
T PRK05749 383 TYLLTDPD 390 (425)
T ss_pred HHHhcCHH
Confidence 99998764
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.82 E-value=1.1e-05 Score=79.16 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=56.4
Q ss_pred CceeeccCCC-hhhhcCCCCcccccccC----CchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 349 VGLVVPMWAP-QPEILAHPSVGGFLTHC----GWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 349 ~~~~~~~~~p-q~~lL~~~~~~~~i~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.++.+.++.. -..++..++ ++|.-+ --+++.||+++|+|+|+-+.. .+...+ ++.+.|...+
T Consensus 246 ~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~g~~~~------ 312 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVNGFLVP------ 312 (359)
T ss_pred ceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcceEEEC------
Confidence 3566666643 355788888 566433 257899999999999996543 344555 4556676653
Q ss_pred CccchHHHHHHHHHHhcccc
Q 011099 424 SVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.++|.+++.+++
T Consensus 313 -~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 313 -PGDAEALADAIERLIEDPE 331 (359)
T ss_pred -CCCHHHHHHHHHHHHhCHH
Confidence 2368999999999988754
No 57
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.81 E-value=4e-07 Score=90.61 Aligned_cols=133 Identities=12% Similarity=0.042 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCCCC-CHHHHHHHHHHHHhCCCc-EEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHh--
Q 011099 269 HESVIYVSFGSGGTL-SSKQTMELAWGLEQSKQR-FIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLI-- 344 (493)
Q Consensus 269 ~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-- 344 (493)
+++.|++++|..... ..+.+..++++++.+..+ ++++..... ..-+.+.+
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~--------------------------~~~~~l~~~~ 250 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP--------------------------RTRPRIREAG 250 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC--------------------------ChHHHHHHHH
Confidence 445788888876543 355677888888776443 444432211 00112221
Q ss_pred -hhC--CCceeeccCCChh---hhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeec
Q 011099 345 -RTR--DVGLVVPMWAPQP---EILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKE 418 (493)
Q Consensus 345 -~~~--~~~~~~~~~~pq~---~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~ 418 (493)
+.. ..++.+.+..++. .++..++ +||+-.| |.+.||+++|+|+|+++.. |. +..+ .+.|++..+.
T Consensus 251 ~~~~~~~~~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~~- 321 (363)
T cd03786 251 LEFLGHHPNVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLVG- 321 (363)
T ss_pred HhhccCCCCEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEecC-
Confidence 111 2466665655543 4577788 9999999 8888999999999998632 22 3334 3667776642
Q ss_pred cCCCCCccchHHHHHHHHHHhcccc
Q 011099 419 VPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
-+.++|.++|.++++++.
T Consensus 322 -------~~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 322 -------TDPEAILAAIEKLLSDEF 339 (363)
T ss_pred -------CCHHHHHHHHHHHhcCch
Confidence 157899999999998764
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.81 E-value=1.3e-05 Score=81.12 Aligned_cols=90 Identities=11% Similarity=0.214 Sum_probs=59.0
Q ss_pred ceeec-cCCChhh---hcCCCCcccccc-c---CC---chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeec
Q 011099 350 GLVVP-MWAPQPE---ILAHPSVGGFLT-H---CG---WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKE 418 (493)
Q Consensus 350 ~~~~~-~~~pq~~---lL~~~~~~~~i~-H---gG---~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~ 418 (493)
++++. +|+|..+ +|..++ ++|. + -| -+++.||+++|+|+|+... ......+ ++.+.|...
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv-- 365 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF-- 365 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--
Confidence 45433 6887555 577888 5552 1 12 3479999999999999654 3455555 566678774
Q ss_pred cCCCCCccchHHHHHHHHHHhcc---cc-hHHHHHHHHHHH
Q 011099 419 VPSEKSVVERGEIEMMVRRIVAE---KQ-GHAIRNRVEELK 455 (493)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~vl~~---~~-~~~~r~~a~~l~ 455 (493)
. +.++++++|.++++| ++ .++|++++++..
T Consensus 366 -----~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 -----G--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -----C--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 2 679999999999988 33 334444444433
No 59
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.78 E-value=2.4e-05 Score=78.85 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=57.7
Q ss_pred CceeeccCCChhh---hcCCCCccccccc-CCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLTH-CGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~H-gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.++.+.+++|+.+ ++..+++-++.+. .|. +++.||+++|+|+|+.. .......+ +.-..|..++
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~------ 349 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVD------ 349 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcC------
Confidence 4688889999765 5677883333232 232 48999999999999864 34555555 3444566643
Q ss_pred CccchHHHHHHHHHHhcccc
Q 011099 424 SVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.++++++|.+++++++
T Consensus 350 -~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 350 -FFDPDALAAAVIELLDDPA 368 (396)
T ss_pred -CCCHHHHHHHHHHHHhCHH
Confidence 2468999999999998764
No 60
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.75 E-value=1.7e-05 Score=77.83 Aligned_cols=82 Identities=10% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCceeeccCCChhh---hcCCCCcccccc----cCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 348 DVGLVVPMWAPQPE---ILAHPSVGGFLT----HCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 348 ~~~~~~~~~~pq~~---lL~~~~~~~~i~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
..++.+.+++++.+ ++..++ ++|. -|.-+++.||+++|+|+|+.+. ......+ +..+.|...+
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~--- 324 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVP--- 324 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeC---
Confidence 34687889997544 677888 5552 2456799999999999998765 4556665 4566777753
Q ss_pred CCCCccchHHHHHHHHHHhcccc
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
..+.+++.++|.+++.++.
T Consensus 325 ----~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 325 ----PGDPEALAEAILRLLDDPE 343 (374)
T ss_pred ----CCCHHHHHHHHHHHHcChH
Confidence 2358999999999998764
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.75 E-value=7.7e-05 Score=75.35 Aligned_cols=90 Identities=7% Similarity=-0.008 Sum_probs=61.3
Q ss_pred CceeeccCCChh---hhcCCCCcccccc---cCC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAPQP---EILAHPSVGGFLT---HCG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~pq~---~lL~~~~~~~~i~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++.+.+++++. +++..++ ++|. +-| -.++.||+++|+|+|+.... .....+ ++.+.|...+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~---- 351 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVD---- 351 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECC----
Confidence 468888999865 4688888 5553 223 35899999999999986543 344454 4555676643
Q ss_pred CCCccchHHHHHHHHHHhcccc-hHHHHHHHH
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ-GHAIRNRVE 452 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~ 452 (493)
.-+.++++++|.++++++. ..+++++++
T Consensus 352 ---~~d~~~la~~i~~~l~~~~~~~~~~~~~~ 380 (405)
T TIGR03449 352 ---GHDPADWADALARLLDDPRTRIRMGAAAV 380 (405)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 2377999999999998754 233444444
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.70 E-value=1e-05 Score=79.87 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=57.9
Q ss_pred CCceeeccCCChh---hhcCCCCcccccc---cCCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 348 DVGLVVPMWAPQP---EILAHPSVGGFLT---HCGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 348 ~~~~~~~~~~pq~---~lL~~~~~~~~i~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
..|+.+.+|+|+. .++..+++.++.+ +.|. .++.||+++|+|+|+....+....... ..+.|...+
T Consensus 243 ~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~----~~~~g~~~~--- 315 (357)
T cd03795 243 LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL----HGVTGLVVP--- 315 (357)
T ss_pred cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh----CCCceEEeC---
Confidence 3478888999975 4777788433333 2343 479999999999999765444432221 135565542
Q ss_pred CCCCccchHHHHHHHHHHhcccc
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.++|.+++++++
T Consensus 316 ----~~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 316 ----PGDPAALAEAIRRLLEDPE 334 (357)
T ss_pred ----CCCHHHHHHHHHHHHHCHH
Confidence 2378999999999998864
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.67 E-value=4.5e-05 Score=75.15 Aligned_cols=83 Identities=10% Similarity=0.021 Sum_probs=58.9
Q ss_pred CceeeccCCChh---hhcCCCCcccccc--cCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 349 VGLVVPMWAPQP---EILAHPSVGGFLT--HCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 349 ~~~~~~~~~pq~---~lL~~~~~~~~i~--HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.++.+.+++++. .++..+++.++.+ -|.-+++.||+++|+|+|+-+.. .....+ +..+.|...+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~~------ 327 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLVP------ 327 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEEC------
Confidence 478888999875 4577778322222 24567899999999999986653 344555 4656666643
Q ss_pred CccchHHHHHHHHHHhcccc
Q 011099 424 SVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.+++.+++.++.
T Consensus 328 -~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 328 -PGDPEALAEAILRLLADPW 346 (377)
T ss_pred -CCCHHHHHHHHHHHhcCcH
Confidence 3478999999999998765
No 64
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.65 E-value=4.3e-05 Score=75.71 Aligned_cols=80 Identities=10% Similarity=0.104 Sum_probs=56.2
Q ss_pred ceeeccCCC-hh---hhcCCCCcccccccC----CchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 350 GLVVPMWAP-QP---EILAHPSVGGFLTHC----GWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 350 ~~~~~~~~p-q~---~lL~~~~~~~~i~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
++...+|++ +. .++..++ ++|.-. ..+++.||+++|+|+|+... ......+ +..+.|..++
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~---- 313 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAK---- 313 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeC----
Confidence 567779998 43 4688888 666643 35799999999999998654 2333344 3444566543
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
..+.+++.+++.+++.+++
T Consensus 314 ---~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 314 ---PGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred ---CCCHHHHHHHHHHHHhCHH
Confidence 2477899999999998754
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.65 E-value=6.3e-05 Score=73.33 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=54.3
Q ss_pred ceeeccCCC-hhhhcCCCCcccccccC----CchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCC
Q 011099 350 GLVVPMWAP-QPEILAHPSVGGFLTHC----GWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKS 424 (493)
Q Consensus 350 ~~~~~~~~p-q~~lL~~~~~~~~i~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~ 424 (493)
++.+.++.. -..++..++ ++|.-. .-+++.||+++|+|+|+.+..+.+. .+.+....|...+
T Consensus 236 ~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~------- 302 (348)
T cd03820 236 RVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVP------- 302 (348)
T ss_pred eEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeC-------
Confidence 566656632 356788888 566543 2478999999999999876544332 2322223666643
Q ss_pred ccchHHHHHHHHHHhcccc
Q 011099 425 VVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 425 ~~~~~~l~~ai~~vl~~~~ 443 (493)
..+.+++.++|.++++|++
T Consensus 303 ~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 303 NGDVEALAEALLRLMEDEE 321 (348)
T ss_pred CCCHHHHHHHHHHHHcCHH
Confidence 2467999999999998865
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.64 E-value=5e-05 Score=76.56 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=52.4
Q ss_pred ceeeccCCChhh---hcCCCCcccccc---cCCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCC
Q 011099 350 GLVVPMWAPQPE---ILAHPSVGGFLT---HCGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSE 422 (493)
Q Consensus 350 ~~~~~~~~pq~~---lL~~~~~~~~i~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~ 422 (493)
++.+.+|+|+.+ +++.++ ++|. +-|. .++.||+++|+|+|+-+..+ ....+ ++ |-+...
T Consensus 251 ~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~------ 316 (398)
T cd03796 251 RVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA------ 316 (398)
T ss_pred eEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec------
Confidence 577779998644 677788 5543 2244 49999999999999977643 33344 33 323222
Q ss_pred CCccchHHHHHHHHHHhccc
Q 011099 423 KSVVERGEIEMMVRRIVAEK 442 (493)
Q Consensus 423 ~~~~~~~~l~~ai~~vl~~~ 442 (493)
.. +.+++.+++.+++.+.
T Consensus 317 -~~-~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 317 -EP-DVESIVRKLEEAISIL 334 (398)
T ss_pred -CC-CHHHHHHHHHHHHhCh
Confidence 22 6799999999999763
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.63 E-value=9.3e-05 Score=73.04 Aligned_cols=81 Identities=12% Similarity=0.038 Sum_probs=56.5
Q ss_pred CceeeccCCChhh---hcCCCCccccccc--CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLTH--CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.++.+.+|+++.+ ++..+++-++-++ |--+++.||+++|+|+|+.+. ......+ .. +.|...+
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~------ 329 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVD------ 329 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeC------
Confidence 4788889999654 5778884222222 224689999999999999653 3455555 35 7777643
Q ss_pred CccchHHHHHHHHHHhcccc
Q 011099 424 SVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~ 443 (493)
. +.+++.++|.+++++++
T Consensus 330 ~--~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 330 D--DVDALAAALRRALELPQ 347 (375)
T ss_pred C--ChHHHHHHHHHHHhCHH
Confidence 2 44999999999998753
No 68
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.63 E-value=3e-05 Score=77.05 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=59.9
Q ss_pred CceeeccCCCh--hh---hcCCCCcccccc--c--CCchHHHHHHHhCCceeecc-cchhcchhhHhhhhheeeeEEeec
Q 011099 349 VGLVVPMWAPQ--PE---ILAHPSVGGFLT--H--CGWNSTMESIVNGVPMIVWP-LYAEQKMNATMLTEELRVAIRSKE 418 (493)
Q Consensus 349 ~~~~~~~~~pq--~~---lL~~~~~~~~i~--H--gG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~e~~Gvg~~~~~ 418 (493)
.++.+.+|+++ .. .+..++ ++|. + |--+++.||+++|+|+|+.- ..+ ....+ ++...|..++
T Consensus 236 ~~v~f~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~- 307 (359)
T PRK09922 236 QRIIWHGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYT- 307 (359)
T ss_pred CeEEEecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEEC-
Confidence 46888888754 22 344566 5553 2 33579999999999999875 322 22334 4545566653
Q ss_pred cCCCCCccchHHHHHHHHHHhcccc---hHHHHHHHHHHHH
Q 011099 419 VPSEKSVVERGEIEMMVRRIVAEKQ---GHAIRNRVEELKH 456 (493)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~vl~~~~---~~~~r~~a~~l~~ 456 (493)
.-+.++++++|.+++++++ ...++++++++.+
T Consensus 308 ------~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 308 ------PGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred ------CCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 2488999999999999875 2334444444443
No 69
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.63 E-value=0.00012 Score=73.55 Aligned_cols=90 Identities=8% Similarity=0.032 Sum_probs=60.1
Q ss_pred CceeeccCCChh---hhcCCCCccccccc---CC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAPQP---EILAHPSVGGFLTH---CG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~pq~---~lL~~~~~~~~i~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++.+.+++|+. .++..++ +++.. -| -.++.||+++|+|.|+.-.. .....+ ...+.|...+
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~---- 348 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE---- 348 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC----
Confidence 478888999976 4677788 55532 22 35789999999999997443 334445 3545666642
Q ss_pred CCCccchHHHHHHHHHHhcccc-hHHHHHHHHH
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ-GHAIRNRVEE 453 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 453 (493)
. +.++++++|.+++.+++ ..++++++++
T Consensus 349 ---~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 349 ---P-TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred ---C-CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2 68999999999998764 2334444433
No 70
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.58 E-value=5.2e-05 Score=73.31 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=70.4
Q ss_pred CccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHh
Q 011099 15 GMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHES 94 (493)
Q Consensus 15 ~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (493)
..-|+.-|-.+.++|.++ ||+|.+.+-... .....+... ++++..+... +.+....+.......
T Consensus 9 ~p~hvhfFk~~I~eL~~~-GheV~it~R~~~---~~~~LL~~y----g~~y~~iG~~--------g~~~~~Kl~~~~~R~ 72 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKR-GHEVLITARDKD---ETEELLDLY----GIDYIVIGKH--------GDSLYGKLLESIERQ 72 (335)
T ss_pred CchHHHHHHHHHHHHHhC-CCEEEEEEeccc---hHHHHHHHc----CCCeEEEcCC--------CCCHHHHHHHHHHHH
Confidence 345999999999999999 999999886632 123333332 5666666531 233333444433332
Q ss_pred hHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecc
Q 011099 95 IPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 95 ~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~ 138 (493)
..+.+++.+. +||++|+-. .+.+..+|.-+|+|.|.+.=+
T Consensus 73 -~~l~~~~~~~--~pDv~is~~-s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 73 -YKLLKLIKKF--KPDVAISFG-SPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred -HHHHHHHHhh--CCCEEEecC-cHHHHHHHHHhCCCeEEEecC
Confidence 3455666665 999999754 677888999999999998644
No 71
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.51 E-value=0.0001 Score=73.12 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=59.2
Q ss_pred CceeeccCCChhh---hcCCCCccccccc----------CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEE
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLTH----------CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIR 415 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~H----------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~ 415 (493)
.++.+.+++|+.+ ++..++ ++|.- |--+++.||+++|+|+|+-+.. .++..+ ++.+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeEE
Confidence 3677889998755 477888 55432 2357999999999999987663 355555 46667776
Q ss_pred eeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 416 SKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.+ .-+.+++.++|.+++.+++
T Consensus 318 ~~-------~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 318 VP-------EGDVAALAAALGRLLADPD 338 (367)
T ss_pred EC-------CCCHHHHHHHHHHHHcCHH
Confidence 53 2467999999999998764
No 72
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.49 E-value=0.00035 Score=68.91 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=52.9
Q ss_pred CceeeccCCC-hhhhcCCCCcccccc--cCC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCC
Q 011099 349 VGLVVPMWAP-QPEILAHPSVGGFLT--HCG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKS 424 (493)
Q Consensus 349 ~~~~~~~~~p-q~~lL~~~~~~~~i~--HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~ 424 (493)
.++.+.+|.+ ...++..+++.++-+ +-| -+++.||+++|+|+|+.-. ......+ .+.+.|..++
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~------- 313 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVP------- 313 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeC-------
Confidence 3677778854 355788888533333 123 3699999999999998654 3344444 3544676653
Q ss_pred ccchHHHHHHHHHHhc
Q 011099 425 VVERGEIEMMVRRIVA 440 (493)
Q Consensus 425 ~~~~~~l~~ai~~vl~ 440 (493)
.-+.+++.++|..++.
T Consensus 314 ~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 314 PGDAEALAQALDQILS 329 (355)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 2478899999976664
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.47 E-value=0.00032 Score=69.13 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred CceeeccCCChhh---hcCCCCcccccc--c--------CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEE
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLT--H--------CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIR 415 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~--H--------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~ 415 (493)
.++.+.+++|+.+ ++..++ ++|. . |.-+++.||+++|+|+|+.+.. .....+ +....|..
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~ad--i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~~ 308 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAAD--LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGLL 308 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCC--EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceEE
Confidence 4788889998654 566788 4444 2 3347899999999999987652 233344 45446776
Q ss_pred eeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 416 SKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.+ .-+.+++.++|.+++.++.
T Consensus 309 ~~-------~~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 309 VP-------PGDPEALADAIERLLDDPE 329 (355)
T ss_pred eC-------CCCHHHHHHHHHHHHhCHH
Confidence 53 2378999999999998764
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.44 E-value=0.00075 Score=68.98 Aligned_cols=82 Identities=12% Similarity=0.164 Sum_probs=55.0
Q ss_pred ceeeccCCChhhh---cCCC--CcccccccC---C-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 350 GLVVPMWAPQPEI---LAHP--SVGGFLTHC---G-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 350 ~~~~~~~~pq~~l---L~~~--~~~~~i~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
++.+.+++++.++ +..+ +..+||... | -.++.||+++|+|.|+.... .+...+ ++..-|..++
T Consensus 318 ~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~--- 389 (439)
T TIGR02472 318 KVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVD--- 389 (439)
T ss_pred eEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeC---
Confidence 5666677777664 4433 112777543 3 35999999999999987653 344444 3444566643
Q ss_pred CCCCccchHHHHHHHHHHhcccc
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.++++++|.++++|+.
T Consensus 390 ----~~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 390 ----VLDLEAIASALEDALSDSS 408 (439)
T ss_pred ----CCCHHHHHHHHHHHHhCHH
Confidence 2378899999999998764
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.42 E-value=0.00032 Score=68.54 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=53.8
Q ss_pred CceeeccCCChhh---hcCCCCcccccc--cCCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLT--HCGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSE 422 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~--HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~ 422 (493)
.++.+.+++++.+ +++.+++-++-+ +-|. .++.||+++|+|+|+... ......+ +....|...+
T Consensus 224 ~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~~----- 293 (335)
T cd03802 224 PDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLVD----- 293 (335)
T ss_pred CcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEeC-----
Confidence 4788889999854 577888433333 2343 589999999999998765 3344444 3433566643
Q ss_pred CCccchHHHHHHHHHHhcc
Q 011099 423 KSVVERGEIEMMVRRIVAE 441 (493)
Q Consensus 423 ~~~~~~~~l~~ai~~vl~~ 441 (493)
. .+++.+++.+++..
T Consensus 294 -~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 294 -S---VEELAAAVARADRL 308 (335)
T ss_pred -C---HHHHHHHHHHHhcc
Confidence 2 88999999988653
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.42 E-value=0.00049 Score=67.87 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=53.9
Q ss_pred ceeecc-CCChh---hhcCCCCccccc--cc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeecc
Q 011099 350 GLVVPM-WAPQP---EILAHPSVGGFL--TH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEV 419 (493)
Q Consensus 350 ~~~~~~-~~pq~---~lL~~~~~~~~i--~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~ 419 (493)
++.+.+ |+|+. .++..++ ++| ++ |..+++.||+++|+|+|+-+..+ ...+ ...+.|...+
T Consensus 248 ~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~-- 317 (366)
T cd03822 248 RVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP-- 317 (366)
T ss_pred cEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc--
Confidence 565554 48864 5677788 555 22 33568999999999999987644 2333 3445666643
Q ss_pred CCCCCccchHHHHHHHHHHhcccc
Q 011099 420 PSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 420 ~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.+++.+++++++
T Consensus 318 -----~~d~~~~~~~l~~l~~~~~ 336 (366)
T cd03822 318 -----PGDPAALAEAIRRLLADPE 336 (366)
T ss_pred -----CCCHHHHHHHHHHHHcChH
Confidence 2367999999999998753
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.37 E-value=0.00089 Score=65.69 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=53.0
Q ss_pred ceeeccCCC-hhhhcCCCCcccccccCC----chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCC
Q 011099 350 GLVVPMWAP-QPEILAHPSVGGFLTHCG----WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKS 424 (493)
Q Consensus 350 ~~~~~~~~p-q~~lL~~~~~~~~i~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~ 424 (493)
++.+.+... -..++..++ ++|..+. -+++.||+++|+|+|+.. ...+...+ ++ .|...+
T Consensus 252 ~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~------- 315 (365)
T cd03807 252 KVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVP------- 315 (365)
T ss_pred eEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeC-------
Confidence 455445433 356888888 6775544 379999999999999854 44555555 34 455542
Q ss_pred ccchHHHHHHHHHHhccc
Q 011099 425 VVERGEIEMMVRRIVAEK 442 (493)
Q Consensus 425 ~~~~~~l~~ai~~vl~~~ 442 (493)
.-+.+++.+++.++++++
T Consensus 316 ~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 316 PGDPEALAEAIEALLADP 333 (365)
T ss_pred CCCHHHHHHHHHHHHhCh
Confidence 236899999999999875
No 78
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.35 E-value=0.00034 Score=68.15 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=51.8
Q ss_pred CceeeccCCCh-hhhcCCCCccccccc--CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCc
Q 011099 349 VGLVVPMWAPQ-PEILAHPSVGGFLTH--CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSV 425 (493)
Q Consensus 349 ~~~~~~~~~pq-~~lL~~~~~~~~i~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~ 425 (493)
.++.+.++.+. .+++..+++-++-++ |.-+++.||+++|+|+|+... ......+ ++.+.|...+ .
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i-~~~~~g~~~~-------~ 313 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREIL-EDGENGLLVP-------V 313 (353)
T ss_pred ccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHh-cCCCceEEEC-------C
Confidence 35666677664 457888883222222 335689999999999998644 3555565 5667787753 2
Q ss_pred cchHHH---HHHHHHHhccc
Q 011099 426 VERGEI---EMMVRRIVAEK 442 (493)
Q Consensus 426 ~~~~~l---~~ai~~vl~~~ 442 (493)
-+.+.+ .+++..++.++
T Consensus 314 ~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 314 GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred CCHHHHHHHHHHHHhccCCh
Confidence 356666 44555555443
No 79
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=0.00035 Score=67.96 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=59.4
Q ss_pred ccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccc-hHHHHH
Q 011099 371 FLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQ-GHAIRN 449 (493)
Q Consensus 371 ~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~ 449 (493)
++-+||+| ..|++++|+|.|.=|+...|.+.++++ +..|.|+.++ +++.+.+++..+++|+. .++|.+
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~---------~~~~l~~~v~~l~~~~~~r~~~~~ 395 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE---------DADLLAKAVELLLADEDKREAYGR 395 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC---------CHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45689988 569999999999999999999999999 7999999975 37888899988887644 233444
Q ss_pred HHHHHHHH
Q 011099 450 RVEELKHS 457 (493)
Q Consensus 450 ~a~~l~~~ 457 (493)
++.++-+.
T Consensus 396 ~~~~~v~~ 403 (419)
T COG1519 396 AGLEFLAQ 403 (419)
T ss_pred HHHHHHHH
Confidence 44444333
No 80
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.28 E-value=0.00096 Score=65.88 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=54.9
Q ss_pred ceeeccCCCh-hhhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCC
Q 011099 350 GLVVPMWAPQ-PEILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKS 424 (493)
Q Consensus 350 ~~~~~~~~pq-~~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~ 424 (493)
++.+.++..+ .+++..++ ++|+- |--+++.||+++|+|+|+-...+ ....+ ++ +.+..+.
T Consensus 250 ~v~~~g~~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~------- 314 (358)
T cd03812 250 KVIFLGVRNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL------- 314 (358)
T ss_pred cEEEecccCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC-------
Confidence 5666676443 56788888 44432 44679999999999999865543 34444 35 5555532
Q ss_pred ccchHHHHHHHHHHhcccc
Q 011099 425 VVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 425 ~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.++++++|.++++++.
T Consensus 315 ~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 315 DESPEIWAEEILKLKSEDR 333 (358)
T ss_pred CCCHHHHHHHHHHHHhCcc
Confidence 2357999999999999876
No 81
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.26 E-value=5.3e-06 Score=67.87 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCCCCHHHH-----HHHHHHHHhCCC-cEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHh
Q 011099 271 SVIYVSFGSGGTLSSKQT-----MELAWGLEQSKQ-RFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLI 344 (493)
Q Consensus 271 ~~v~vs~GS~~~~~~~~~-----~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 344 (493)
..+||+-||... ++.+ .+....|.+.|. +.|..++.+.. ..++....
T Consensus 4 ~~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------------------------~~~d~~~~ 56 (170)
T KOG3349|consen 4 MTVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------------------------FFGDPIDL 56 (170)
T ss_pred eEEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------------------------CCCCHHHh
Confidence 379999999642 1222 234566666775 67777766532 11111111
Q ss_pred hhCCCc--eeeccCCCh-hhhcCCCCcccccccCCchHHHHHHHhCCceeeccc----chhcchhhHhhhhheeeeEE
Q 011099 345 RTRDVG--LVVPMWAPQ-PEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL----YAEQKMNATMLTEELRVAIR 415 (493)
Q Consensus 345 ~~~~~~--~~~~~~~pq-~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~e~~Gvg~~ 415 (493)
-.+..+ +...+|-|- .+....++ ++|+|+|+||++|.|..|+|.|+++- ..+|-..|..++ +.|.=..
T Consensus 57 ~~k~~gl~id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~ 131 (170)
T KOG3349|consen 57 IRKNGGLTIDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYY 131 (170)
T ss_pred hcccCCeEEEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEE
Confidence 112223 344477775 55566688 99999999999999999999999994 478999999995 6664433
No 82
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.24 E-value=0.00011 Score=72.78 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCC--C-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhh
Q 011099 270 ESVIYVSFGSGG--T-LSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRT 346 (493)
Q Consensus 270 ~~~v~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 346 (493)
++.++|++=... . ...+.+..+++++...+..+++++..... + + ..+-+.+....
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p-------------~----~-----~~i~~~i~~~~ 258 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA-------------G----S-----RIINEAIEEYV 258 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC-------------C----c-----hHHHHHHHHHh
Confidence 458778775432 2 34567889999998887666665422110 0 0 11111122212
Q ss_pred C-CCceeeccCCC---hhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCC
Q 011099 347 R-DVGLVVPMWAP---QPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSE 422 (493)
Q Consensus 347 ~-~~~~~~~~~~p---q~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~ 422 (493)
+ .+++.+.+-++ ...++.+++ ++||-++.|- .||.+.|||.|.+- +-+ .-+ +.|-.+.+
T Consensus 259 ~~~~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~--~~g~nvl~------ 321 (365)
T TIGR03568 259 NEHPNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR--LRADSVID------ 321 (365)
T ss_pred cCCCCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc---hhh--hhcCeEEE------
Confidence 1 34676665544 566888999 9999886555 99999999999773 211 111 22322221
Q ss_pred CCccchHHHHHHHHHHhc
Q 011099 423 KSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 423 ~~~~~~~~l~~ai~~vl~ 440 (493)
-..++++|.+++.+++.
T Consensus 322 -vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 322 -VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred -eCCCHHHHHHHHHHHhC
Confidence 12478999999999553
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.23 E-value=0.0022 Score=63.31 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCceeeccCCChhh---hcCCCCcccccccCCc-----hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeecc
Q 011099 348 DVGLVVPMWAPQPE---ILAHPSVGGFLTHCGW-----NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEV 419 (493)
Q Consensus 348 ~~~~~~~~~~pq~~---lL~~~~~~~~i~HgG~-----gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~ 419 (493)
..++.+.+++++.+ ++..++ +++.+.-. +++.||+++|+|+|+....+ +...+ +.. |...+
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~~--g~~~~-- 315 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GDK--AIYFK-- 315 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cCC--eeEec--
Confidence 34788889999865 455566 44443322 57999999999999876532 23333 332 32321
Q ss_pred CCCCCccchHHHHHHHHHHhcccc
Q 011099 420 PSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 420 ~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
. .+.+++++.+++++++
T Consensus 316 ----~---~~~l~~~i~~l~~~~~ 332 (363)
T cd04955 316 ----V---GDDLASLLEELEADPE 332 (363)
T ss_pred ----C---chHHHHHHHHHHhCHH
Confidence 1 1129999999998753
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.23 E-value=0.00056 Score=67.51 Aligned_cols=77 Identities=5% Similarity=0.015 Sum_probs=52.9
Q ss_pred CceeeccCCCh-hhhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 349 VGLVVPMWAPQ-PEILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 349 ~~~~~~~~~pq-~~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.++.+.++..+ .+++..++ ++|.- |.-+++.||+++|+|+|+. |...+...+ ++.|....
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad--~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~~g~~~~-------- 309 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAAD--LFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GDSGLIVP-------- 309 (360)
T ss_pred CcEEEecccccHHHHHHhhc--eEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cCCceEeC--------
Confidence 35766677654 56788888 44432 2257899999999999974 455666666 45444333
Q ss_pred CccchHHHHHHHHHHhcc
Q 011099 424 SVVERGEIEMMVRRIVAE 441 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~ 441 (493)
.-+.+++.+++.+++.+
T Consensus 310 -~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 310 -ISDPEALANKIDEILKM 326 (360)
T ss_pred -CCCHHHHHHHHHHHHhC
Confidence 24778999999999854
No 85
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.22 E-value=2.9e-05 Score=75.63 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=56.4
Q ss_pred ChhhhcCCCCcccccccCCchHHHHHHHhCCceeeccc--chhcchhhHhhhh---heeeeEEee----------ccCCC
Q 011099 358 PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL--YAEQKMNATMLTE---ELRVAIRSK----------EVPSE 422 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~--~~DQ~~na~~v~e---~~Gvg~~~~----------~~~~~ 422 (493)
.-.+++..++ ++|+-+|..|. |+..+|+|||+ ++ ..-|+.||+++ . ..|....+- ++-
T Consensus 228 ~~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEll-- 300 (347)
T PRK14089 228 DTHKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELL-- 300 (347)
T ss_pred cHHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhh--
Confidence 3456888999 99999999999 99999999999 55 35789999998 4 555444431 011
Q ss_pred CCccchHHHHHHHHH
Q 011099 423 KSVVERGEIEMMVRR 437 (493)
Q Consensus 423 ~~~~~~~~l~~ai~~ 437 (493)
++..|++.|.+++.+
T Consensus 301 Q~~~t~~~la~~i~~ 315 (347)
T PRK14089 301 QEFVTVENLLKAYKE 315 (347)
T ss_pred cccCCHHHHHHHHHH
Confidence 367899999999987
No 86
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.14 E-value=0.0073 Score=66.43 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=57.9
Q ss_pred ceeeccCCChhh---hcCCCC--ccccccc---CC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 350 GLVVPMWAPQPE---ILAHPS--VGGFLTH---CG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 350 ~~~~~~~~pq~~---lL~~~~--~~~~i~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
.+.+.+++++.+ ++..++ .++||.- =| -.++.||+++|+|+|+-...+ ....+ +.-.-|..++
T Consensus 549 ~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVd--- 620 (1050)
T TIGR02468 549 QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVD--- 620 (1050)
T ss_pred eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEEC---
Confidence 566778888765 343331 1266653 23 358999999999999986533 22333 3334466653
Q ss_pred CCCCccchHHHHHHHHHHhcccc-hHHHHHHHHH
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ-GHAIRNRVEE 453 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 453 (493)
.-+.+.|+++|.+++.++. ..++.+++.+
T Consensus 621 ----P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 621 ----PHDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred ----CCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 2478899999999998865 2334444443
No 87
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.13 E-value=0.0036 Score=63.45 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=52.1
Q ss_pred eeccCCChhhhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccc
Q 011099 352 VVPMWAPQPEILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVE 427 (493)
Q Consensus 352 ~~~~~~pq~~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~ 427 (493)
++.++.+..+++...+ +||.- +=.+++.||+++|+|.|+.-..+ + ..+ .+.+-|... -+
T Consensus 287 vf~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~---------~~ 349 (462)
T PLN02846 287 VYPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY---------DD 349 (462)
T ss_pred EECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec---------CC
Confidence 3557777777888888 88765 34578999999999999976443 2 333 343344332 25
Q ss_pred hHHHHHHHHHHhccc
Q 011099 428 RGEIEMMVRRIVAEK 442 (493)
Q Consensus 428 ~~~l~~ai~~vl~~~ 442 (493)
.+++.+++.++|.++
T Consensus 350 ~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 350 GKGFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHHHccC
Confidence 789999999999864
No 88
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.08 E-value=0.0031 Score=65.00 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=54.8
Q ss_pred hhhcCCCCcccccccCCchHHHHHHHhCCceeecc-cchhcchhhHhhhh----h-------eeeeEEeeccCCCCCccc
Q 011099 360 PEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWP-LYAEQKMNATMLTE----E-------LRVAIRSKEVPSEKSVVE 427 (493)
Q Consensus 360 ~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~e----~-------~Gvg~~~~~~~~~~~~~~ 427 (493)
.+++..++ +.+.-+|- .|.|+..+|+|||++= ...=-+..|+++.+ . +|=.+..+ +-.++...|
T Consensus 483 ~~~m~aaD--~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPE-llqgQ~~~t 558 (608)
T PRK01021 483 YELMRECD--CALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPE-FIGGKKDFQ 558 (608)
T ss_pred HHHHHhcC--eeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchh-hcCCcccCC
Confidence 57888888 77777774 5679999999999952 22222345566542 0 11111111 110015689
Q ss_pred hHHHHHHHHHHhcccc-hHHHHHHHHHHHHH
Q 011099 428 RGEIEMMVRRIVAEKQ-GHAIRNRVEELKHS 457 (493)
Q Consensus 428 ~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~ 457 (493)
+++|.+++ ++|.|++ .+++++..+++++.
T Consensus 559 pe~La~~l-~lL~d~~~r~~~~~~l~~lr~~ 588 (608)
T PRK01021 559 PEEVAAAL-DILKTSQSKEKQKDACRDLYQA 588 (608)
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH
Confidence 99999997 7887754 23344444444444
No 89
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.00 E-value=0.0014 Score=65.97 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCceeeccCCCh-hhhcCCCCccccc--cc--CCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 348 DVGLVVPMWAPQ-PEILAHPSVGGFL--TH--CGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 348 ~~~~~~~~~~pq-~~lL~~~~~~~~i--~H--gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
..++.+.+++++ ..++..++ ++| ++ .|. +.+.||+++|+|+|+.+...+. +.+..|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~ad--v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAA--VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCC--EEEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEeC----
Confidence 346877889885 45788888 554 32 354 3699999999999998764321 112335666542
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
-+.++++++|.++++|+.
T Consensus 347 ----~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 347 ----ADPADFAAAILALLANPA 364 (397)
T ss_pred ----CCHHHHHHHHHHHHcCHH
Confidence 378999999999998764
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.99 E-value=0.022 Score=56.69 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=54.3
Q ss_pred ceeeccCCC-hhhhcCCCCccccc--cc--CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCC
Q 011099 350 GLVVPMWAP-QPEILAHPSVGGFL--TH--CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKS 424 (493)
Q Consensus 350 ~~~~~~~~p-q~~lL~~~~~~~~i--~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~ 424 (493)
++.+.++.. -..++..++ ++| ++ |--+++.||+++|+|+|+-... .+...+ ++-..|..++
T Consensus 256 ~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~------- 321 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVP------- 321 (374)
T ss_pred eEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeC-------
Confidence 344445443 356788888 555 33 4456999999999999997653 344444 4545576653
Q ss_pred ccchHHHHHHHHHHhcccc
Q 011099 425 VVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 425 ~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.++++++|.+++.++.
T Consensus 322 ~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 322 PGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCCHHHHHHHHHHHHhCHH
Confidence 2467899999999998754
No 91
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.96 E-value=7.3e-05 Score=73.41 Aligned_cols=131 Identities=9% Similarity=0.051 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCCCC-H---HHHHHHHHHHHhC-CCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhH
Q 011099 268 PHESVIYVSFGSGGTLS-S---KQTMELAWGLEQS-KQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGF 342 (493)
Q Consensus 268 ~~~~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 342 (493)
.+++.++|++=...... + ..+.++++++... +.++||.+..... ....+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~--------------------------~~~~i 231 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR--------------------------GSDII 231 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH--------------------------HHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch--------------------------HHHHH
Confidence 46679999986655555 3 3455566777666 6678888843211 00112
Q ss_pred HhhhCC-CceeeccCCC---hhhhcCCCCcccccccCCchHHH-HHHHhCCceeecccchhcchhhHhhhhheeeeEEee
Q 011099 343 LIRTRD-VGLVVPMWAP---QPEILAHPSVGGFLTHCGWNSTM-ESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSK 417 (493)
Q Consensus 343 ~~~~~~-~~~~~~~~~p---q~~lL~~~~~~~~i~HgG~gs~~-eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~ 417 (493)
.+.... +++.+.+.++ ...+|.+++ ++|+-.| ++. ||.+.|||.|.+ -|+...-.-+ ..|..+.+
T Consensus 232 ~~~l~~~~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~~~nvlv- 301 (346)
T PF02350_consen 232 IEKLKKYDNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ERGSNVLV- 301 (346)
T ss_dssp HHHHTT-TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HTTSEEEE-
T ss_pred HHHhcccCCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hhcceEEe-
Confidence 222211 2676666665 456788999 9999999 555 999999999999 2222222221 22333333
Q ss_pred ccCCCCCccchHHHHHHHHHHhcc
Q 011099 418 EVPSEKSVVERGEIEMMVRRIVAE 441 (493)
Q Consensus 418 ~~~~~~~~~~~~~l~~ai~~vl~~ 441 (493)
+ .+.++|.+++++++.+
T Consensus 302 ------~-~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 302 ------G-TDPEAIIQAIEKALSD 318 (346)
T ss_dssp ------T-SSHHHHHHHHHHHHH-
T ss_pred ------C-CCHHHHHHHHHHHHhC
Confidence 2 5889999999999976
No 92
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.90 E-value=0.005 Score=60.60 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=62.2
Q ss_pred ChhhhcCCCCcccccccCCchHHHHHHHhCCceeecc-cchhcchhhHhhhhhee-eeE--Ee------eccCCCCCccc
Q 011099 358 PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWP-LYAEQKMNATMLTEELR-VAI--RS------KEVPSEKSVVE 427 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~e~~G-vg~--~~------~~~~~~~~~~~ 427 (493)
.-.+++..++ +.+.-+| -.|.|+...|+|||++= ...=.+..|++++ ... +|+ -+ +++= ++..|
T Consensus 253 ~~~~~m~~ad--~al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~isL~Niia~~~v~PEli--Q~~~~ 326 (373)
T PF02684_consen 253 ESYDAMAAAD--AALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKYISLPNIIAGREVVPELI--QEDAT 326 (373)
T ss_pred chHHHHHhCc--chhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCEeechhhhcCCCcchhhh--cccCC
Confidence 4556788888 6666566 45789999999999862 1222345566663 222 111 00 0011 36789
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCh
Q 011099 428 RGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSS 468 (493)
Q Consensus 428 ~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~ 468 (493)
++.|.+++.++|.|++ .++..+...+.+++....|.++
T Consensus 327 ~~~i~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 327 PENIAAELLELLENPE---KRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhhhhccCC
Confidence 9999999999999876 4444444455555544445544
No 93
>PLN02949 transferase, transferring glycosyl groups
Probab=97.89 E-value=0.041 Score=56.41 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=50.4
Q ss_pred CceeeccCCChhh---hcCCCCcccccc---cCCch-HHHHHHHhCCceeecccchhcchhhHhhhh-hee-eeEEeecc
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLT---HCGWN-STMESIVNGVPMIVWPLYAEQKMNATMLTE-ELR-VAIRSKEV 419 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e-~~G-vg~~~~~~ 419 (493)
.++.+.+++|+.+ +|..++ ++|+ +=|+| ++.||+++|+|.|+....+-- ...+.+ ..| .|...
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~--- 406 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA--- 406 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC---
Confidence 3677779998665 577787 5552 23333 799999999999998654310 011100 112 23221
Q ss_pred CCCCCccchHHHHHHHHHHhcc
Q 011099 420 PSEKSVVERGEIEMMVRRIVAE 441 (493)
Q Consensus 420 ~~~~~~~~~~~l~~ai~~vl~~ 441 (493)
. +.+++++++.+++++
T Consensus 407 ----~--~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 ----T--TVEEYADAILEVLRM 422 (463)
T ss_pred ----C--CHHHHHHHHHHHHhC
Confidence 2 789999999999985
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.89 E-value=0.003 Score=62.19 Aligned_cols=80 Identities=9% Similarity=0.131 Sum_probs=53.7
Q ss_pred CCceeeccCCChhh---hcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 348 DVGLVVPMWAPQPE---ILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 348 ~~~~~~~~~~pq~~---lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
..++.+.+++|+.+ ++..++ ++|.- |..+++.||+++|+|+|+-.. ......+ .+.| ..+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~-~~~~--~~~~--- 319 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGAR--AFVFPSLYEGFGLPVLEAMACGTPVIASNI----SSLPEVA-GDAA--LYFD--- 319 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhh--hhcccchhccCCCCHHHHhcCCCcEEecCC----CCcccee-cCce--eeeC---
Confidence 44788889998764 677788 44422 334589999999999998554 2233333 3333 3322
Q ss_pred CCCCccchHHHHHHHHHHhcccc
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
.-+.+++.++|.+++.|+.
T Consensus 320 ----~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 320 ----PLDPEALAAAIERLLEDPA 338 (365)
T ss_pred ----CCCHHHHHHHHHHHhcCHH
Confidence 2378999999999998765
No 95
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.87 E-value=0.062 Score=57.90 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=71.0
Q ss_pred CEEEEEcCCC-------------ccCHHHHHHHHHH--------HHhcCCc----eEEEEEcCCCCch--hhhhhccCCC
Q 011099 6 PHVALLASPG-------------MGHLIPVLELGKR--------LVIQNNH----HATIFVVANDTSS--EQLSKLVNSP 58 (493)
Q Consensus 6 ~~vl~~~~p~-------------~GHv~P~l~LA~~--------L~~r~Gh----~Vt~~~~~~~~~~--v~~~~~~~~~ 58 (493)
++|++++.=+ -|+..=.+.+|++ |+++ || +|+++|-...... ....-++...
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCCcccccccccccccc
Confidence 6787765433 4677778888887 5688 99 7779885432110 0011112222
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHHH-HHHhcCCCCcEEEECCcc--hhHHHHHHHcCCeEEEE
Q 011099 59 DYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRS-TISAMKYRPTALIVDLFG--TEAMAVADEFEMLKYMF 135 (493)
Q Consensus 59 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~~DlVI~D~~~--~~a~~~A~~lgIP~v~~ 135 (493)
...+.++..+|..+.....-..+-....++..+......+.+ +..+...+||+|++.+.. ..|..+++++|||.+..
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 223666666665332210001111223444444444444443 333334589999987643 33567999999997765
Q ss_pred e
Q 011099 136 I 136 (493)
Q Consensus 136 ~ 136 (493)
.
T Consensus 415 ~ 415 (784)
T TIGR02470 415 A 415 (784)
T ss_pred C
Confidence 3
No 96
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=0.0026 Score=61.47 Aligned_cols=318 Identities=15% Similarity=0.077 Sum_probs=168.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCC-ceEEEEEcCCCCc-hhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNN-HHATIFVVANDTS-SEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~G-h~Vt~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
-+++.+|++=.++=+-.|.+++.+. + .+..++.+..+.+ ......++.. ++.. |..+.... ..+..
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~-~~~~~~vi~TGQH~d~em~~~~le~~----~i~~---pdy~L~i~-~~~~t--- 72 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKD-PDFELIVIHTGQHRDYEMLDQVLELF----GIRK---PDYDLNIM-KPGQT--- 72 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhC-CCCceEEEEecccccHHHHHHHHHHh----CCCC---CCcchhcc-ccCCC---
Confidence 3445559999999999999999998 5 7878887777654 2333433322 1221 22222221 22222
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEE--ECCcchhH-HHHHHHcCCeEEEEecchHHHHHHHhhhcchhhhhhhhhcc
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALI--VDLFGTEA-MAVADEFEMLKYMFIASNAWFVAVTIYAPALDKKVLQEEHV 162 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI--~D~~~~~a-~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (493)
+..........+.+++++. +||+|+ .|.....| ..+|..++||+.-+..+--+
T Consensus 73 -l~~~t~~~i~~~~~vl~~~--kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt--------------------- 128 (383)
T COG0381 73 -LGEITGNIIEGLSKVLEEE--KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT--------------------- 128 (383)
T ss_pred -HHHHHHHHHHHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc---------------------
Confidence 3344555667788888887 999988 56554444 67999999997776432100
Q ss_pred cCCCcccCCCCCCCCcccccccccCCCCcchHHHHHHhhhccCccEEEEcChhhhhHHHHHHHHhhhhhccCCCCC--eE
Q 011099 163 NQKKPLKIPGCSAVRFEDTLEAFLDPYGPMYDGFLQVGMDMSKADGILVNTWEDLESKTLAALRDFNMLRRVAKAP--VY 240 (493)
Q Consensus 163 ~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~p~--~~ 240 (493)
.. ..+|. - .-+....... +.-+.+| +...-.+++.. .|+ ++
T Consensus 129 -~~--~~~PE-----------E-------~NR~l~~~~S-----~~hfapt----e~ar~nLl~EG-------~~~~~If 171 (383)
T COG0381 129 -GD--LYFPE-----------E-------INRRLTSHLS-----DLHFAPT----EIARKNLLREG-------VPEKRIF 171 (383)
T ss_pred -CC--CCCcH-----------H-------HHHHHHHHhh-----hhhcCCh----HHHHHHHHHcC-------CCccceE
Confidence 00 00000 0 0000000000 0001111 01111111211 222 67
Q ss_pred EeccccCCCCC---CCCccccccccc-ccCCCCCeEEEEEcCCCCCCCHHHHHHHHH----HHHhC-CCcEEEEEcCCCC
Q 011099 241 PVGPLARSVAS---SPVSGSHVVLDW-LDKQPHESVIYVSFGSGGTLSSKQTMELAW----GLEQS-KQRFIWVVRPPLD 311 (493)
Q Consensus 241 ~vGp~~~~~~~---~~~~~~~~~~~~-l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~----al~~~-~~~~i~~~~~~~~ 311 (493)
.+|-...+.-. .....+.....- +.. +.+..++|++=--.+.. +.+..+.. .++.. +..+|.-+....
T Consensus 172 vtGnt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~- 248 (383)
T COG0381 172 VTGNTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP- 248 (383)
T ss_pred EeCChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh-
Confidence 77755433100 000011111111 222 23348888764433333 33444444 44444 334444332211
Q ss_pred CCccccccccCCCCCcccccccccCCCchhH-HhhhCC-Cceeec---cCCChhhhcCCCCcccccccCCchHHHHHHHh
Q 011099 312 HDVFDSYLTAGSGALNTAEGALDYHYLPEGF-LIRTRD-VGLVVP---MWAPQPEILAHPSVGGFLTHCGWNSTMESIVN 386 (493)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~~-~~~~~~---~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~ 386 (493)
.+ .++ ....++ +++.+. +|.+...++.++- +++|-.| |-.-||-..
T Consensus 249 -------------------------~v-~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSG-giqEEAp~l 299 (383)
T COG0381 249 -------------------------RV-RELVLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSG-GIQEEAPSL 299 (383)
T ss_pred -------------------------hh-hHHHHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCC-chhhhHHhc
Confidence 01 011 123332 244433 5677888999998 9999998 567799999
Q ss_pred CCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 387 GVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 387 GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
|+|.+++=..-++|. ++ +.|.-+.+ ..+++.|.+++.+++++++
T Consensus 300 g~Pvl~lR~~TERPE---~v--~agt~~lv--------g~~~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 300 GKPVLVLRDTTERPE---GV--EAGTNILV--------GTDEENILDAATELLEDEE 343 (383)
T ss_pred CCcEEeeccCCCCcc---ce--ecCceEEe--------CccHHHHHHHHHHHhhChH
Confidence 999999977777776 33 44544443 3577999999999998865
No 97
>PLN00142 sucrose synthase
Probab=97.84 E-value=0.026 Score=60.72 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=62.4
Q ss_pred cCHHHHHH--------HHHHHHhcCCceEE----EEEcCCCCc--hhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcc
Q 011099 17 GHLIPVLE--------LGKRLVIQNNHHAT----IFVVANDTS--SEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDAS 82 (493)
Q Consensus 17 GHv~P~l~--------LA~~L~~r~Gh~Vt----~~~~~~~~~--~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 82 (493)
|++.=.+. |+++|+++ ||+|+ ++|--.... .....-++..+...+.++..+|..+..+..+ ..-
T Consensus 304 GQ~vYVl~~aral~~el~~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~-~~i 381 (815)
T PLN00142 304 GQVVYILDQVRALENEMLLRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILR-KWI 381 (815)
T ss_pred CceehHHHHHHHHHHHHHHHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccc-ccc
Confidence 55555554 55788899 99875 776422111 0011111222222356666666533211101 111
Q ss_pred hHHHHHHHHHHhhHHHHHHH-HhcCCCCcEEEECCcch--hHHHHHHHcCCeEEEEec
Q 011099 83 LVTQIAVMMHESIPALRSTI-SAMKYRPTALIVDLFGT--EAMAVADEFEMLKYMFIA 137 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~ll-~~~~~~~DlVI~D~~~~--~a~~~A~~lgIP~v~~~~ 137 (493)
....++..+......+.+.+ .+...+||+|.+.+... .|..+++++|||.+....
T Consensus 382 ~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 382 SRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 22344444444444444333 44444799999886444 456799999999887643
No 98
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.82 E-value=0.033 Score=55.65 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=51.8
Q ss_pred ccCCChh---hhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCcc
Q 011099 354 PMWAPQP---EILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVV 426 (493)
Q Consensus 354 ~~~~pq~---~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~ 426 (493)
.+++++. .++..++ ++|.= +...++.||+++|+|+|+... ......+ +.-+.|..++.-+. +..-
T Consensus 266 ~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~-~~~~ 337 (388)
T TIGR02149 266 NKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNS-DADG 337 (388)
T ss_pred cCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCC-cccc
Confidence 3677754 4677888 55532 223577999999999998754 3455555 45556777541000 0011
Q ss_pred chHHHHHHHHHHhcccc
Q 011099 427 ERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 427 ~~~~l~~ai~~vl~~~~ 443 (493)
..+++.++|.+++.|+.
T Consensus 338 ~~~~l~~~i~~l~~~~~ 354 (388)
T TIGR02149 338 FQAELAKAINILLADPE 354 (388)
T ss_pred hHHHHHHHHHHHHhCHH
Confidence 12789999999998754
No 99
>PLN02275 transferase, transferring glycosyl groups
Probab=97.77 E-value=0.054 Score=54.03 Aligned_cols=74 Identities=8% Similarity=0.135 Sum_probs=51.0
Q ss_pred ceeecc-CCChhhh---cCCCCcccccc-c-----CC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeec
Q 011099 350 GLVVPM-WAPQPEI---LAHPSVGGFLT-H-----CG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKE 418 (493)
Q Consensus 350 ~~~~~~-~~pq~~l---L~~~~~~~~i~-H-----gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~ 418 (493)
|+++.. |+|+.++ ++.++ ++|. + -| -+++.||+++|+|.|+... ..+...+ ++-+.|...+
T Consensus 287 ~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~- 358 (371)
T PLN02275 287 HVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS- 358 (371)
T ss_pred ceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC-
Confidence 555434 7887655 88888 5552 1 12 3579999999999999753 2355555 5666787752
Q ss_pred cCCCCCccchHHHHHHHHHHh
Q 011099 419 VPSEKSVVERGEIEMMVRRIV 439 (493)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~vl 439 (493)
+.++++++|.++|
T Consensus 359 --------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------SSSELADQLLELL 371 (371)
T ss_pred --------CHHHHHHHHHHhC
Confidence 4788999998775
No 100
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=0.0026 Score=61.35 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=63.9
Q ss_pred hcCCCCcccccccCCchHHHHHHHhCCceeeccc-chhcchhhHhhhhhee-eeE-------Ee-eccCCCCCccchHHH
Q 011099 362 ILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL-YAEQKMNATMLTEELR-VAI-------RS-KEVPSEKSVVERGEI 431 (493)
Q Consensus 362 lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~-~~DQ~~na~~v~e~~G-vg~-------~~-~~~~~~~~~~~~~~l 431 (493)
.+..++ +.+.-+|- -+.|+..+|+|||+.=- ..=-+..|+++. ... +++ .+ +++- +...+++.|
T Consensus 261 a~~~aD--~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEli--q~~~~pe~l 334 (381)
T COG0763 261 AFAAAD--AALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELI--QEDCTPENL 334 (381)
T ss_pred HHHHhh--HHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHH--hhhcCHHHH
Confidence 566777 66766774 46799999999998511 011133444443 222 111 10 0010 356889999
Q ss_pred HHHHHHHhccc-chHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011099 432 EMMVRRIVAEK-QGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHEC 479 (493)
Q Consensus 432 ~~ai~~vl~~~-~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 479 (493)
.+++.+++.|+ +.+++.+....|++. ++.+++++...+.+++.+
T Consensus 335 a~~l~~ll~~~~~~~~~~~~~~~l~~~----l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 335 ARALEELLLNGDRREALKEKFRELHQY----LREDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHhcChHhHHHHHHHHHHHHHH----HcCCcHHHHHHHHHHHHh
Confidence 99999999987 323445555555554 555667766766666654
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.73 E-value=0.033 Score=56.56 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=52.8
Q ss_pred CceeeccCCChhh---hcCCCCcccccc-----cCCchHHHHHHHhCCceeecccchhcchhhHhhhh---heeeeEEee
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLT-----HCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTE---ELRVAIRSK 417 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~-----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e---~~Gvg~~~~ 417 (493)
.++.+.+++|+.+ +|..++ ++|+ |-| .++.||+++|+|.|+.-..+. ..-+.+ .-..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp----~~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP----LLDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC----chheeeccCCCCceEEe-
Confidence 3677779998764 677788 5443 333 488999999999998654321 111212 33456552
Q ss_pred ccCCCCCccchHHHHHHHHHHhcccc
Q 011099 418 EVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 418 ~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
. +.+++++++.++++++.
T Consensus 377 ------~--d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ------S--TAEEYAEAIEKILSLSE 394 (419)
T ss_pred ------C--CHHHHHHHHHHHHhCCH
Confidence 2 78999999999998643
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.70 E-value=0.11 Score=55.63 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=54.7
Q ss_pred CceeeccCCCh-hhhcCCCCcccccc---cCC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 349 VGLVVPMWAPQ-PEILAHPSVGGFLT---HCG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 349 ~~~~~~~~~pq-~~lL~~~~~~~~i~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.++.+.+|.++ ..++..++ +||. +.| -+++.||+++|+|+|+.... .....| ++-.-|..++ .
T Consensus 574 ~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~-----~ 641 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLP-----A 641 (694)
T ss_pred CcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeC-----C
Confidence 46777788765 45777888 5553 444 46899999999999997653 344444 3544576654 2
Q ss_pred CccchHHHHHHHHHHhcc
Q 011099 424 SVVERGEIEMMVRRIVAE 441 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~ 441 (493)
+..+.+++.+++.+++.+
T Consensus 642 ~d~~~~~La~aL~~ll~~ 659 (694)
T PRK15179 642 DTVTAPDVAEALARIHDM 659 (694)
T ss_pred CCCChHHHHHHHHHHHhC
Confidence 445667888888777754
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.63 E-value=0.027 Score=58.08 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=44.4
Q ss_pred hhcCCCCcccccc---cCCch-HHHHHHHhCCceeecccch--hcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHH
Q 011099 361 EILAHPSVGGFLT---HCGWN-STMESIVNGVPMIVWPLYA--EQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMM 434 (493)
Q Consensus 361 ~lL~~~~~~~~i~---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~a 434 (493)
.++..++ +||. +-|+| +.+||+++|+|.|+.-..+ |.-.+...- ...+-|..++ .-+++++.++
T Consensus 352 ~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~-------~~d~~~la~~ 421 (466)
T PRK00654 352 RIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFD-------DFNAEDLLRA 421 (466)
T ss_pred HHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeC-------CCCHHHHHHH
Confidence 4678888 5553 33444 8889999999999865432 221111110 1225677653 2478899999
Q ss_pred HHHHhc
Q 011099 435 VRRIVA 440 (493)
Q Consensus 435 i~~vl~ 440 (493)
|.+++.
T Consensus 422 i~~~l~ 427 (466)
T PRK00654 422 LRRALE 427 (466)
T ss_pred HHHHHH
Confidence 999886
No 104
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.55 E-value=0.0017 Score=65.71 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=58.8
Q ss_pred CceeeccCCChhh---hcCCCCcccccccCC----chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLTHCG----WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+-.. ......+ ++.+.|..+.
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~---- 359 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLS---- 359 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeC----
Confidence 3577789999765 444433337765443 4689999999999998653 3455555 4555777754
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
..-+.++++++|.+++.|+.
T Consensus 360 --~~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 360 --KDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred --CCCCHHHHHHHHHHHHhCHH
Confidence 33478999999999998754
No 105
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.55 E-value=0.11 Score=51.69 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=50.8
Q ss_pred ceeeccCC--Chh---hhcCCCCcccccccC---C-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 350 GLVVPMWA--PQP---EILAHPSVGGFLTHC---G-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 350 ~~~~~~~~--pq~---~lL~~~~~~~~i~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
++.+.++. ++. .+++.++ +|+.-. | -.++.||+++|+|+|+.... .....+ +....|...+
T Consensus 253 ~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~--- 322 (372)
T cd03792 253 DIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD--- 322 (372)
T ss_pred CeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC---
Confidence 45555665 332 4677777 666433 2 45999999999999987543 233344 3545565532
Q ss_pred CCCCccchHHHHHHHHHHhcccc
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
+.++++.+|.+++.+++
T Consensus 323 ------~~~~~a~~i~~ll~~~~ 339 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPE 339 (372)
T ss_pred ------CcHHHHHHHHHHHcCHH
Confidence 34678889999998754
No 106
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00057 Score=55.13 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=42.4
Q ss_pred hhhcCCCCcccccccCCchHHHHHHHhCCceeecccc--------hhcchhhHhhhhheeeeEE
Q 011099 360 PEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLY--------AEQKMNATMLTEELRVAIR 415 (493)
Q Consensus 360 ~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~--------~DQ~~na~~v~e~~Gvg~~ 415 (493)
+.+...++ ++|+|+|.||+..++..++|.|++|-. .+|-..|..++ +.+.=..
T Consensus 60 Qsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~ 120 (161)
T COG5017 60 QSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVA 120 (161)
T ss_pred HHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEE
Confidence 44455556 999999999999999999999999953 36888888885 6665544
No 107
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.42 E-value=0.0053 Score=62.02 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=57.7
Q ss_pred CceeeccCCChhh---hcCCCCcccccc--c-------CCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEE
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFLT--H-------CGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIR 415 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i~--H-------gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~ 415 (493)
.++.+.+|+|+.+ ++..++ +||. + -|. ++++||+++|+|+|+.... .....+ ++-..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceEE
Confidence 3688889999865 677788 5553 2 344 5789999999999997543 344444 45456766
Q ss_pred eeccCCCCCccchHHHHHHHHHHhc-ccc
Q 011099 416 SKEVPSEKSVVERGEIEMMVRRIVA-EKQ 443 (493)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~ai~~vl~-~~~ 443 (493)
.+ .-+.++++++|.++++ |++
T Consensus 352 v~-------~~d~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 352 VP-------ENDAQALAQRLAAFSQLDTD 373 (406)
T ss_pred eC-------CCCHHHHHHHHHHHHhCCHH
Confidence 53 2378999999999998 654
No 108
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.36 E-value=0.0016 Score=65.38 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhh-hC
Q 011099 269 HESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIR-TR 347 (493)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~ 347 (493)
+..++|.+|.+....+++.+..-++-|++.+...+|....+... + ..+-..+... +.
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~-----------------~-----~~l~~~~~~~Gv~ 340 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG-----------------E-----ARLRRRFAAHGVD 340 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH-----------------H-----HHHHHHHHHTTS-
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH-----------------H-----HHHHHHHHHcCCC
Confidence 44599999999999999999999999999999999988644210 0 1111111100 11
Q ss_pred CCceeeccCCChhhhc---CCCCcccc---cccCCchHHHHHHHhCCceeecccchhc-chhhHhhhhheeeeEEeeccC
Q 011099 348 DVGLVVPMWAPQPEIL---AHPSVGGF---LTHCGWNSTMESIVNGVPMIVWPLYAEQ-KMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 348 ~~~~~~~~~~pq~~lL---~~~~~~~~---i~HgG~gs~~eal~~GvP~l~~P~~~DQ-~~na~~v~e~~Gvg~~~~~~~ 420 (493)
...+++.++.++.+-| ..++ ++ ...+|..|++|||+.|||+|.+|--.=. ..-+..+ ..+|+...+.
T Consensus 341 ~~Ri~f~~~~~~~ehl~~~~~~D--I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA--- 414 (468)
T PF13844_consen 341 PDRIIFSPVAPREEHLRRYQLAD--ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA--- 414 (468)
T ss_dssp GGGEEEEE---HHHHHHHGGG-S--EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB----
T ss_pred hhhEEEcCCCCHHHHHHHhhhCC--EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC---
Confidence 2246666777765544 4455 33 3457889999999999999999943211 2222333 4667665542
Q ss_pred CCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECEN 481 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 481 (493)
.+.++-.+.-.++-+|.. + -+++++.+++.+.+. .-.+...+.+.+++
T Consensus 415 -----~s~~eYv~~Av~La~D~~---~---l~~lR~~Lr~~~~~S--pLfd~~~~ar~lE~ 462 (468)
T PF13844_consen 415 -----DSEEEYVEIAVRLATDPE---R---LRALRAKLRDRRSKS--PLFDPKRFARNLEA 462 (468)
T ss_dssp -----SSHHHHHHHHHHHHH-HH---H---HHHHHHHHHHHHHHS--GGG-HHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhCCHH---H---HHHHHHHHHHHHhhC--CCCCHHHHHHHHHH
Confidence 234444444435555543 2 234444444433221 12344455555544
No 109
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.26 E-value=0.017 Score=57.73 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=57.1
Q ss_pred ceeeccCCChhh---hcCCCCccccccc----CCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 350 GLVVPMWAPQPE---ILAHPSVGGFLTH----CGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 350 ~~~~~~~~pq~~---lL~~~~~~~~i~H----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
++.+.+++|+.+ ++..++ ++|.. -|. .++.||+++|+|+|+.... .+...+ ++...|..+.
T Consensus 258 ~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~---- 326 (380)
T PRK15484 258 RCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLA---- 326 (380)
T ss_pred cEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEe----
Confidence 567779998654 588888 55542 343 5778999999999997653 344444 4545566442
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
...+.++++++|.++++|++
T Consensus 327 --~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPE 346 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHH
Confidence 33478999999999998875
No 110
>PLN02316 synthase/transferase
Probab=97.25 E-value=0.26 Score=54.78 Aligned_cols=106 Identities=7% Similarity=-0.038 Sum_probs=61.5
Q ss_pred hhcCCCCccccccc----CCchHHHHHHHhCCceeecccch--hcchhhH----h--hhhheeeeEEeeccCCCCCccch
Q 011099 361 EILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYA--EQKMNAT----M--LTEELRVAIRSKEVPSEKSVVER 428 (493)
Q Consensus 361 ~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~--DQ~~na~----~--v~e~~Gvg~~~~~~~~~~~~~~~ 428 (493)
.++..++ +|+.- +=-.+.+||+++|+|.|+-...+ |.-.... + ....-+-|...+ ..++
T Consensus 915 ~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~-------~~d~ 985 (1036)
T PLN02316 915 LIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD-------GADA 985 (1036)
T ss_pred HHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC-------CCCH
Confidence 4677777 66632 22358999999999988865432 3222110 0 000013466642 3578
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011099 429 GEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECE 480 (493)
Q Consensus 429 ~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 480 (493)
+.|..+|.+++.. |.+....+++..++++...-+-...+++.++-.+
T Consensus 986 ~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 986 AGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred HHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 8999999999964 3334444555555555555555555555554443
No 111
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.23 E-value=0.0029 Score=62.51 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=80.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceee
Q 011099 274 YVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVV 353 (493)
Q Consensus 274 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~ 353 (493)
++..|+... ......++++++.++.+++++-..+. .+.+.+ ....++.+
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~----------------------------~~~l~~-~~~~~V~~ 246 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPE----------------------------LDRLRA-KAGPNVTF 246 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChh----------------------------HHHHHh-hcCCCEEE
Confidence 445566542 23466778888888877655442111 112222 22347888
Q ss_pred ccCCChh---hhcCCCCcccccccCCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchH
Q 011099 354 PMWAPQP---EILAHPSVGGFLTHCGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERG 429 (493)
Q Consensus 354 ~~~~pq~---~lL~~~~~~~~i~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~ 429 (493)
.+++|+. .++..+++-++-+.-|. .++.||+++|+|+|+....+ ....+ ++.+.|..++ .-+.+
T Consensus 247 ~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~-------~~~~~ 314 (351)
T cd03804 247 LGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFE-------EQTVE 314 (351)
T ss_pred ecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeC-------CCCHH
Confidence 8999985 46878884333334444 45789999999999986533 34444 4545677753 23678
Q ss_pred HHHHHHHHHhccc
Q 011099 430 EIEMMVRRIVAEK 442 (493)
Q Consensus 430 ~l~~ai~~vl~~~ 442 (493)
+++++|.++++++
T Consensus 315 ~la~~i~~l~~~~ 327 (351)
T cd03804 315 SLAAAVERFEKNE 327 (351)
T ss_pred HHHHHHHHHHhCc
Confidence 8999999999886
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.15 E-value=0.28 Score=50.72 Aligned_cols=81 Identities=9% Similarity=0.107 Sum_probs=56.6
Q ss_pred CceeeccCCChhhhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhhe-----e-eeEEeec
Q 011099 349 VGLVVPMWAPQPEILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEEL-----R-VAIRSKE 418 (493)
Q Consensus 349 ~~~~~~~~~pq~~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~-----G-vg~~~~~ 418 (493)
.++.+.+...-.+++..++ ++|.- |--+++.||+++|+|+|+- |.......+ ++. | .|...+
T Consensus 354 ~~V~f~G~~~v~~~l~~aD--v~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLD--VLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP- 425 (475)
T ss_pred CeEEEcCCccHHHHHHhCC--EEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC-
Confidence 4677777666677888888 55433 3346899999999999995 334444444 342 2 566643
Q ss_pred cCCCCCccchHHHHHHHHHHhcccc
Q 011099 419 VPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
..+.++++++|.++++|+.
T Consensus 426 ------~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 426 ------PADPEALARAILRLLKDPE 444 (475)
T ss_pred ------CCCHHHHHHHHHHHhcCHH
Confidence 3478999999999998864
No 113
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.14 E-value=0.43 Score=50.43 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=51.2
Q ss_pred eeeccCCChh-hhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCc
Q 011099 351 LVVPMWAPQP-EILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSV 425 (493)
Q Consensus 351 ~~~~~~~pq~-~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~ 425 (493)
+.+.++.++. +++..++ +||.= |=.+++.||+++|+|.|+.-..+... + .. |.+..+.
T Consensus 603 V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~-------- 665 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY-------- 665 (794)
T ss_pred EEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec--------
Confidence 5555777755 4888888 66642 23568999999999999987654221 2 22 2222221
Q ss_pred cchHHHHHHHHHHhcccc
Q 011099 426 VERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 426 ~~~~~l~~ai~~vl~~~~ 443 (493)
-+.+++.++|.++|.++.
T Consensus 666 ~D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 666 KTSEDFVAKVKEALANEP 683 (794)
T ss_pred CCHHHHHHHHHHHHhCch
Confidence 267999999999998764
No 114
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.08 E-value=0.23 Score=51.26 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=43.8
Q ss_pred hhcCCCCccccccc---CCc-hHHHHHHHhCCceeecccch--hcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHH
Q 011099 361 EILAHPSVGGFLTH---CGW-NSTMESIVNGVPMIVWPLYA--EQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMM 434 (493)
Q Consensus 361 ~lL~~~~~~~~i~H---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~a 434 (493)
.++..++ +++.- -|+ .+.+||+++|+|.|+....+ |.-.+...- .+.|.|...+ .-+.+++.++
T Consensus 366 ~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~-------~~~~~~l~~~ 435 (476)
T cd03791 366 LIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFE-------GYNADALLAA 435 (476)
T ss_pred HHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeC-------CCCHHHHHHH
Confidence 3677777 55532 122 47899999999999865532 221111111 1234677753 2468999999
Q ss_pred HHHHhcc
Q 011099 435 VRRIVAE 441 (493)
Q Consensus 435 i~~vl~~ 441 (493)
+.+++..
T Consensus 436 i~~~l~~ 442 (476)
T cd03791 436 LRRALAL 442 (476)
T ss_pred HHHHHHH
Confidence 9998864
No 115
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.96 E-value=0.49 Score=47.19 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=52.3
Q ss_pred CceeeccCCChhh---hcCCCCccccc------ccCCc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeec
Q 011099 349 VGLVVPMWAPQPE---ILAHPSVGGFL------THCGW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKE 418 (493)
Q Consensus 349 ~~~~~~~~~pq~~---lL~~~~~~~~i------~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~ 418 (493)
+|+.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...+ +..+.+...
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~-- 323 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLI-- 323 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEe--
Confidence 4788889998766 56778854432 22332 468999999999998763 2222 233323332
Q ss_pred cCCCCCccchHHHHHHHHHHhcccc
Q 011099 419 VPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
. -+.+++.++|++++.++.
T Consensus 324 -----~-~d~~~~~~ai~~~l~~~~ 342 (373)
T cd04950 324 -----A-DDPEEFVAAIEKALLEDG 342 (373)
T ss_pred -----C-CCHHHHHHHHHHHHhcCC
Confidence 1 278999999999876543
No 116
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.76 E-value=0.0078 Score=59.03 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=73.5
Q ss_pred ceeeccCCChhhhcCC--CCcccccccC-------Cc------hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeE
Q 011099 350 GLVVPMWAPQPEILAH--PSVGGFLTHC-------GW------NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAI 414 (493)
Q Consensus 350 ~~~~~~~~pq~~lL~~--~~~~~~i~Hg-------G~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~ 414 (493)
|+.+.+|+|+.++..+ .+.+++...- .+ +-+.+.+++|+|+|+.+ +...+..| ++.++|.
T Consensus 208 ~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V-~~~~~G~ 282 (333)
T PRK09814 208 NISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFI-VENGLGF 282 (333)
T ss_pred CeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHH-HhCCceE
Confidence 7888899998876432 1333332211 11 22777899999999864 56777777 7889999
Q ss_pred EeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011099 415 RSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIA 476 (493)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 476 (493)
.++ +.+++.+++.++ .++...+|++|++++++.+++ |.--...+++++
T Consensus 283 ~v~---------~~~el~~~l~~~-~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~ 330 (333)
T PRK09814 283 VVD---------SLEELPEIIDNI-TEEEYQEMVENVKKISKLLRN----GYFTKKALVDAI 330 (333)
T ss_pred EeC---------CHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHH
Confidence 963 457899999885 445566799999999988665 554444444443
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.67 E-value=0.0071 Score=52.82 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=58.6
Q ss_pred CceeeccCCCh---hhhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAPQ---PEILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~pq---~~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++.+.+++++ ..++..++ ++|+. +..+++.||+++|+|+|+.- ...+...+ ...+.|...+
T Consensus 73 ~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~---- 141 (172)
T PF00534_consen 73 ENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFD---- 141 (172)
T ss_dssp TTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEES----
T ss_pred ccccccccccccccccccccce--eccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeC----
Confidence 36777788873 45777888 67766 56779999999999999854 45555665 4656788864
Q ss_pred CCCccchHHHHHHHHHHhcccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
. .+.+++.++|.+++.+++
T Consensus 142 --~-~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 142 --P-NDIEELADAIEKLLNDPE 160 (172)
T ss_dssp --T-TSHHHHHHHHHHHHHHHH
T ss_pred --C-CCHHHHHHHHHHHHCCHH
Confidence 2 388999999999998764
No 118
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.60 E-value=0.0076 Score=50.26 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=47.7
Q ss_pred ceeeccCCCh-hhhcCCCCccccccc--CC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCc
Q 011099 350 GLVVPMWAPQ-PEILAHPSVGGFLTH--CG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSV 425 (493)
Q Consensus 350 ~~~~~~~~pq-~~lL~~~~~~~~i~H--gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~ 425 (493)
++.+.+|++. .+++..+++.+..+. .| -+++.|++++|+|+|+.+. .....+ +..+.|..+.
T Consensus 54 ~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~~-------- 119 (135)
T PF13692_consen 54 NVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLVA-------- 119 (135)
T ss_dssp TEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T--------
T ss_pred CEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEEC--------
Confidence 7888899853 447888887666543 23 4899999999999999876 122233 4567776642
Q ss_pred cchHHHHHHHHHHhcc
Q 011099 426 VERGEIEMMVRRIVAE 441 (493)
Q Consensus 426 ~~~~~l~~ai~~vl~~ 441 (493)
-+.+++.++|+++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3889999999999865
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.57 E-value=0.2 Score=45.22 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=24.6
Q ss_pred CccCHHHHHHHHHHHHhcCCceEEEEE
Q 011099 15 GMGHLIPVLELGKRLVIQNNHHATIFV 41 (493)
Q Consensus 15 ~~GHv~P~l~LA~~L~~r~Gh~Vt~~~ 41 (493)
..|+-.....|++.|.++ ||+|++++
T Consensus 12 ~~G~~~~~~~l~~~L~~~-g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARR-GHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHc-CCeEEEEE
Confidence 569999999999999999 99999988
No 120
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.30 E-value=1 Score=45.37 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=37.7
Q ss_pred hhcCCCCccccccc----CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHH
Q 011099 361 EILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMV 435 (493)
Q Consensus 361 ~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai 435 (493)
+++..++ +||.- |--+++.||+++|+|.|+....+ ....+ +. +-|..++ .-+.++|++++
T Consensus 302 ~~y~~aD--vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~-------~~d~~~La~~~ 365 (405)
T PRK10125 302 SALNQMD--ALVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVS-------EEEVLQLAQLS 365 (405)
T ss_pred HHHHhCC--EEEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEEC-------CCCHHHHHhcc
Confidence 3455566 55542 33468999999999999987754 22233 23 4577654 22667777653
No 121
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.16 E-value=1.2 Score=42.01 Aligned_cols=108 Identities=14% Similarity=0.026 Sum_probs=72.2
Q ss_pred CCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHH
Q 011099 13 SPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMH 92 (493)
Q Consensus 13 ~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (493)
.+..-|+.-|-.|-+.|..+ ||+|.+-+-... . ....+... ++.+..+.... +..+...+.....
T Consensus 7 I~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~-~--v~~LLd~y----gf~~~~Igk~g-------~~tl~~Kl~~~~e 71 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKK-GHEVLITCRDFG-V--VTELLDLY----GFPYKSIGKHG-------GVTLKEKLLESAE 71 (346)
T ss_pred cCCcchhhHHHHHHHHHHhC-CeEEEEEEeecC-c--HHHHHHHh----CCCeEeecccC-------CccHHHHHHHHHH
Confidence 45567999999999999999 999988765521 1 12333332 45555554211 1233323333333
Q ss_pred HhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecch
Q 011099 93 ESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 93 ~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
..+ .+.++..+. +||+.|. -..+.+..+|--+|+|.+.+.-+.
T Consensus 72 R~~-~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 72 RVY-KLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHH-HHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 333 567788877 9999999 668889999999999999986543
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.04 E-value=0.28 Score=47.73 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=36.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTS 47 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~ 47 (493)
+|+++-....|++.-...+.++|+++. +.+|++++.+.+.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~ 42 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFAD 42 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhh
Confidence 488888899999999999999999986 89999999987533
No 123
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.00 E-value=0.072 Score=52.97 Aligned_cols=94 Identities=10% Similarity=0.096 Sum_probs=61.9
Q ss_pred ceeeccCCCh-hhhcCCCCccccccc--CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCcc
Q 011099 350 GLVVPMWAPQ-PEILAHPSVGGFLTH--CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVV 426 (493)
Q Consensus 350 ~~~~~~~~pq-~~lL~~~~~~~~i~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~ 426 (493)
++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +....|..++ .-
T Consensus 262 ~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~-------~~ 330 (372)
T cd04949 262 YVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVP-------KG 330 (372)
T ss_pred eEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeC-------CC
Confidence 5666666654 457888885445554 33568999999999999965431 133444 4555677653 24
Q ss_pred chHHHHHHHHHHhcccc-hHHHHHHHHHH
Q 011099 427 ERGEIEMMVRRIVAEKQ-GHAIRNRVEEL 454 (493)
Q Consensus 427 ~~~~l~~ai~~vl~~~~-~~~~r~~a~~l 454 (493)
+.++++++|.+++.++. ..++.+++.+.
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 359 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYEN 359 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 78999999999998863 33445555444
No 124
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.96 E-value=0.012 Score=45.87 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=45.9
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCCC---CH--HHHHHHHHHHHhCCCcEEEEEcCCC
Q 011099 256 GSHVVLDWLDKQPHESVIYVSFGSGGTL---SS--KQTMELAWGLEQSKQRFIWVVRPPL 310 (493)
Q Consensus 256 ~~~~~~~~l~~~~~~~~v~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~ 310 (493)
.+..+.+|+...+.++.|+||+||.... .. ..+..++++++.++..++..+....
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 6678899999989999999999997442 22 4688999999999999999996554
No 125
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.84 E-value=0.87 Score=44.98 Aligned_cols=111 Identities=8% Similarity=0.037 Sum_probs=69.7
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeE-EEEcCCCCCCCCCC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILD-IVLLPCIDISGIVC 78 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~ 78 (493)
|.+..++|+++-....|++.=...+.+.|+++. +.+|++++.+.+.+ .+...| .++ +..++.. .
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~-----l~~~~P---~id~vi~~~~~---~--- 66 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIP-----ILSENP---EINALYGIKNK---K--- 66 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHH-----HhccCC---CceEEEEeccc---c---
Confidence 777789999999999999999999999999986 88999999887533 333333 333 2222211 0
Q ss_pred CCcchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEE
Q 011099 79 TDASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYM 134 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~ 134 (493)
......+. ....+...+++ .++|++|.-....-...++...|.|..+
T Consensus 67 --~~~~~~~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 67 --AGASEKIK-----NFFSLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --ccHHHHHH-----HHHHHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00000110 11122233333 3999999665444455667777877655
No 126
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.70 E-value=0.43 Score=49.53 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=61.7
Q ss_pred ceeeccCCChhhhcCCCCcccccc---cCC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCC-CC
Q 011099 350 GLVVPMWAPQPEILAHPSVGGFLT---HCG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSE-KS 424 (493)
Q Consensus 350 ~~~~~~~~pq~~lL~~~~~~~~i~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~-~~ 424 (493)
++.+.++.+..+++..++ +||. .=| ..++.||+++|+|+|+.-..+ .+...+ +.-.-|..++ .+.+ ..
T Consensus 377 ~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~-~~~~~~d 449 (500)
T TIGR02918 377 YIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIP-IDEEEDD 449 (500)
T ss_pred eEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEe-CCccccc
Confidence 577778888889999998 5664 234 468999999999999975421 233343 3433455543 1100 00
Q ss_pred ccc-hHHHHHHHHHHhcccchHHHHHHHHHHH
Q 011099 425 VVE-RGEIEMMVRRIVAEKQGHAIRNRVEELK 455 (493)
Q Consensus 425 ~~~-~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 455 (493)
.-+ .++++++|.+++.++...++.+++.+.+
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQIA 481 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 112 6889999999996544444555555433
No 127
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.3 Score=49.74 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=87.4
Q ss_pred CCCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhh-
Q 011099 268 PHESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRT- 346 (493)
Q Consensus 268 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~- 346 (493)
++.-+||+||+......++.+..=+.-|...+..++|....+.. ....+.+.+..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~------------------------~~~~~~l~~la~ 482 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD------------------------AEINARLRDLAE 482 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc------------------------HHHHHHHHHHHH
Confidence 45569999999999999999988888899999999998866421 11112222111
Q ss_pred ----CCCceeeccCCChh---hhcCCCCcccccc---cCCchHHHHHHHhCCceeecccchhcch--hhHhhhhheeeeE
Q 011099 347 ----RDVGLVVPMWAPQP---EILAHPSVGGFLT---HCGWNSTMESIVNGVPMIVWPLYAEQKM--NATMLTEELRVAI 414 (493)
Q Consensus 347 ----~~~~~~~~~~~pq~---~lL~~~~~~~~i~---HgG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~v~e~~Gvg~ 414 (493)
+...+++.+-.|.. +=+..++ +|.. -||+-|+.|+|..|||+|.++ ++|+. |+.-++..+|+-.
T Consensus 483 ~~Gv~~eRL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e 558 (620)
T COG3914 483 REGVDSERLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPE 558 (620)
T ss_pred HcCCChhheeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCch
Confidence 12234444555543 3333455 5553 489999999999999999997 77763 3333335666655
Q ss_pred EeeccCCCCCccchHHHHHHHH
Q 011099 415 RSKEVPSEKSVVERGEIEMMVR 436 (493)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~ai~ 436 (493)
.+- .-.++-++.+|+
T Consensus 559 ~vA-------~s~~dYV~~av~ 573 (620)
T COG3914 559 LVA-------DSRADYVEKAVA 573 (620)
T ss_pred hhc-------CCHHHHHHHHHH
Confidence 542 224566777774
No 128
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.17 E-value=4.8 Score=41.91 Aligned_cols=62 Identities=19% Similarity=0.080 Sum_probs=42.7
Q ss_pred CceeeccCCCh-hhhcCCCCcccccc---cCC-chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEee
Q 011099 349 VGLVVPMWAPQ-PEILAHPSVGGFLT---HCG-WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSK 417 (493)
Q Consensus 349 ~~~~~~~~~pq-~~lL~~~~~~~~i~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~ 417 (493)
.++.+.+|..+ ..+|..++ +||. .-| -+++.||+++|+|+|+... ..+...+ ++-..|..++
T Consensus 455 d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp 521 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILD 521 (578)
T ss_pred CcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEEC
Confidence 46777787643 45688888 7764 334 5699999999999998765 3455555 4555677654
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.12 E-value=0.25 Score=41.22 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=62.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHH
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQI 87 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 87 (493)
|++++.....| ...+++.|.++ ||+|++++......... . ..++.+..++.. . ......
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~~~~-----~---~~~i~~~~~~~~----~----k~~~~~- 60 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYEKYE-----I---IEGIKVIRLPSP----R----KSPLNY- 60 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCchhhh-----H---hCCeEEEEecCC----C----CccHHH-
Confidence 67777665555 55779999999 99999999964321111 1 136676666421 1 111111
Q ss_pred HHHHHHhhHHHHHHHHhcCCCCcEEEECCcch---hHHHHHHHcC-CeEEEEe
Q 011099 88 AVMMHESIPALRSTISAMKYRPTALIVDLFGT---EAMAVADEFE-MLKYMFI 136 (493)
Q Consensus 88 ~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~---~a~~~A~~lg-IP~v~~~ 136 (493)
.. .. .+..++++. +||+|.+..... .+..++...| +|++...
T Consensus 61 ---~~-~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 61 ---IK-YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred ---HH-HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 11 22 667778776 999998776543 2445678888 8988654
No 130
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.56 E-value=0.078 Score=45.06 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHHH
Q 011099 21 PVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRS 100 (493)
Q Consensus 21 P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (493)
-+..|+++|.++ ||+|+++++...... .. ... .++.+..++....... ..... ....+..
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~ 65 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPED--DE-EEE----DGVRVHRLPLPRRPWP-LRLLR-----------FLRRLRR 65 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG---S-EEE----TTEEEEEE--S-SSSG-GGHCC-----------HHHHHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCcc--cc-ccc----CCceEEeccCCccchh-hhhHH-----------HHHHHHH
Confidence 467899999999 999999998754331 11 111 2567766664332211 00001 1123344
Q ss_pred HHHhcCCCCcEEEECCcch-hHHHHHH-HcCCeEEEEe
Q 011099 101 TISAMKYRPTALIVDLFGT-EAMAVAD-EFEMLKYMFI 136 (493)
Q Consensus 101 ll~~~~~~~DlVI~D~~~~-~a~~~A~-~lgIP~v~~~ 136 (493)
++.....+||+|.+..... ....++. ..++|++...
T Consensus 66 ~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 66 LLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 4411134999999776332 2233445 8899988854
No 131
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.31 E-value=0.38 Score=36.95 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=50.1
Q ss_pred cCCchHHHHHHHhCCceeecccchhcchhhHhhhhhee-eeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHH
Q 011099 374 HCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELR-VAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVE 452 (493)
Q Consensus 374 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~G-vg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~ 452 (493)
+|-..-+.|++++|+|+|+-.- ......+ ..| -++.. . +.+++.++|..+++|+. .+++-++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~--~~~~~~~~~-------~--~~~el~~~i~~ll~~~~--~~~~ia~ 71 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF--EDGEHIITY-------N--DPEELAEKIEYLLENPE--ERRRIAK 71 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc--CCCCeEEEE-------C--CHHHHHHHHHHHHCCHH--HHHHHHH
Confidence 4556689999999999999765 3333333 223 23331 2 88999999999999864 1333333
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHH
Q 011099 453 ELKHSAQKALINGGSSYNSLSKIA 476 (493)
Q Consensus 453 ~l~~~~~~a~~~~g~~~~~~~~~~ 476 (493)
+-.+.++ +.-+....++.|+
T Consensus 72 ~a~~~v~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 72 NARERVL----KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHH----HhCCHHHHHHHHH
Confidence 3334433 3454455555554
No 132
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.20 E-value=1 Score=46.42 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=49.0
Q ss_pred ceeeccCCChh---hhcCCCCccccccc---CCch-HHHHHHHhCCceeecccchhcchhhHhhhhhe------eeeEEe
Q 011099 350 GLVVPMWAPQP---EILAHPSVGGFLTH---CGWN-STMESIVNGVPMIVWPLYAEQKMNATMLTEEL------RVAIRS 416 (493)
Q Consensus 350 ~~~~~~~~pq~---~lL~~~~~~~~i~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~------Gvg~~~ 416 (493)
++.+....+.. .++..++ +++.- -|.| +.+||+++|+|.|+-...+ ....+ ++. +.|...
T Consensus 347 ~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~ 419 (473)
T TIGR02095 347 NVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLF 419 (473)
T ss_pred cEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEe
Confidence 44443444543 4677788 55532 2444 7889999999999865532 22222 222 667765
Q ss_pred eccCCCCCccchHHHHHHHHHHhc
Q 011099 417 KEVPSEKSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 417 ~~~~~~~~~~~~~~l~~ai~~vl~ 440 (493)
+ .-+++++.++|.+++.
T Consensus 420 ~-------~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 420 E-------EYDPGALLAALSRALR 436 (473)
T ss_pred C-------CCCHHHHHHHHHHHHH
Confidence 3 2478899999999886
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=0.46 Score=48.76 Aligned_cols=121 Identities=20% Similarity=0.240 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhh--
Q 011099 269 HESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRT-- 346 (493)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-- 346 (493)
+..+||.+|--.-..+++.++.-++-|++.+..++|..+.+... | ..|....
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g-----------------e---------~rf~ty~~~ 810 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG-----------------E---------QRFRTYAEQ 810 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc-----------------h---------HHHHHHHHH
Confidence 44599999988888999999999999999999999999776431 0 1121111
Q ss_pred ---CCCceeeccCCChhh-----hcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEe
Q 011099 347 ---RDVGLVVPMWAPQPE-----ILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRS 416 (493)
Q Consensus 347 ---~~~~~~~~~~~pq~~-----lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~ 416 (493)
....+++.+-+.-.+ .|......-+.+ -|.-|.++.|++|||||.+|.-.--...|.-+.-..|+|..+
T Consensus 811 ~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli 887 (966)
T KOG4626|consen 811 LGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI 887 (966)
T ss_pred hCCCccceeeccccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH
Confidence 111233333333222 222222222333 477899999999999999997543222332222477888754
No 134
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=93.89 E-value=1.6 Score=44.11 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=63.4
Q ss_pred hhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhc
Q 011099 361 EILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 361 ~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~ 440 (493)
.++++++ ++|..==+ +..-|+..|||.+.+++ |..... .+ +.+|.....- + -..++.++|.+.+.++++
T Consensus 323 ~iIs~~d--l~ig~RlH-a~I~a~~~gvP~i~i~Y--~~K~~~-~~-~~lg~~~~~~--~--~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 323 KILGACE--LTVGTRLH-SAIISMNFGTPAIAINY--EHKSAG-IM-QQLGLPEMAI--D--IRHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHhhCC--EEEEecch-HHHHHHHcCCCEEEeee--hHHHHH-HH-HHcCCccEEe--c--hhhCCHHHHHHHHHHHHh
Confidence 7888888 88853322 45668899999999987 544444 33 6888776631 1 166888999999999998
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011099 441 EKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECE 480 (493)
Q Consensus 441 ~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 480 (493)
+.+ ++++..++--+.+++ .+.+.+.++++.+.
T Consensus 392 ~r~--~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 392 QLP--ALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred CHH--HHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 742 244433333222222 11235556666554
No 135
>PRK14098 glycogen synthase; Provisional
Probab=93.46 E-value=2.2 Score=44.24 Aligned_cols=81 Identities=9% Similarity=-0.071 Sum_probs=50.8
Q ss_pred ceeeccCCChh---hhcCCCCcccccccC---Cc-hHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCC
Q 011099 350 GLVVPMWAPQP---EILAHPSVGGFLTHC---GW-NSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSE 422 (493)
Q Consensus 350 ~~~~~~~~pq~---~lL~~~~~~~~i~Hg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~ 422 (493)
++.+..+.+.. .+++.++ +|+.-. |. .+.+||+++|+|.|+....+-........ ++-+-|...+
T Consensus 363 ~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~----- 434 (489)
T PRK14098 363 QVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFH----- 434 (489)
T ss_pred CEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeC-----
Confidence 56666777764 5778888 565422 22 37789999999988876543211111111 2235666653
Q ss_pred CCccchHHHHHHHHHHhc
Q 011099 423 KSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 423 ~~~~~~~~l~~ai~~vl~ 440 (493)
.-+.+++.++|.+++.
T Consensus 435 --~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 435 --DYTPEALVAKLGEALA 450 (489)
T ss_pred --CCCHHHHHHHHHHHHH
Confidence 3478999999998763
No 136
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.22 E-value=7.7 Score=36.72 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTS 47 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~ 47 (493)
+|+++-..+.|++.-+..+.++|+++. +-+|++++.+.+.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~ 42 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAP 42 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHH
Confidence 488899999999999999999999984 57999999986533
No 137
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.02 E-value=0.44 Score=42.54 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=29.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCc
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTS 47 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 47 (493)
|+|++..=-+. +---+..|+++|.+. ||+|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCCCCc
Confidence 67777765544 444578899999888 89999999997544
No 138
>PHA01633 putative glycosyl transferase group 1
Probab=92.83 E-value=2 Score=41.89 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=51.9
Q ss_pred ceeec---cCCChh---hhcCCCCccccccc---CC-chHHHHHHHhCCceeeccc------chhc------chhhHhhh
Q 011099 350 GLVVP---MWAPQP---EILAHPSVGGFLTH---CG-WNSTMESIVNGVPMIVWPL------YAEQ------KMNATMLT 407 (493)
Q Consensus 350 ~~~~~---~~~pq~---~lL~~~~~~~~i~H---gG-~gs~~eal~~GvP~l~~P~------~~DQ------~~na~~v~ 407 (493)
++.+. +++++. +++..++ +||.- =| -+++.||+++|+|.|+--+ .+|+ ..+....+
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 45554 455554 5677788 66653 24 4578899999999998633 2343 22332221
Q ss_pred h-heeeeEEeeccCCCCCccchHHHHHHHHHHhcc
Q 011099 408 E-ELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAE 441 (493)
Q Consensus 408 e-~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 441 (493)
. ..|.|... ...++++++++|.+++..
T Consensus 280 ~~~~g~g~~~-------~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 280 DKEHGQKWKI-------HKFQIEDMANAIILAFEL 307 (335)
T ss_pred CcccCceeee-------cCCCHHHHHHHHHHHHhc
Confidence 1 23555554 346899999999999654
No 139
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.47 E-value=1.6 Score=38.01 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=62.7
Q ss_pred EcCCCccCHHHHHHHHHHH-HhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHH
Q 011099 11 LASPGMGHLIPVLELGKRL-VIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAV 89 (493)
Q Consensus 11 ~~~p~~GHv~P~l~LA~~L-~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (493)
+..++-||..=|+.|.+.+ .++..++..+++..+......-.-++.... ....+..++.... -+.........
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~-~~~~~~~~~r~r~-----v~q~~~~~~~~ 76 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS-KRHKILEIPRARE-----VGQSYLTSIFT 76 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc-ccceeeccceEEE-----echhhHhhHHH
Confidence 4457779999999999999 333145555555444322211111111100 0112333332111 11122223344
Q ss_pred HHHHhhHHHHHHHHhcCCCCcEEEECCcc--hhHHHHHHHc------CCeEEEEecc
Q 011099 90 MMHESIPALRSTISAMKYRPTALIVDLFG--TEAMAVADEF------EMLKYMFIAS 138 (493)
Q Consensus 90 ~~~~~~~~l~~ll~~~~~~~DlVI~D~~~--~~a~~~A~~l------gIP~v~~~~~ 138 (493)
........+.-+.++ +||+||+..-. .+...+|..+ |.+.|.+-+.
T Consensus 77 ~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 77 TLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 444444444444444 89999988544 4456688888 9999887543
No 140
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=92.30 E-value=6.1 Score=38.37 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=36.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVAND 45 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~ 45 (493)
|||+++-..+.|++.=...+.+.|+++. +.+||+++.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~ 41 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGF 41 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHH
Confidence 5899999999999999999999999976 899999998754
No 141
>PHA01630 putative group 1 glycosyl transferase
Probab=92.09 E-value=4.4 Score=39.57 Aligned_cols=110 Identities=10% Similarity=-0.009 Sum_probs=58.5
Q ss_pred cCCChhh---hcCCCCccccc--cc-CC-chHHHHHHHhCCceeecccch--hcch---hhHhhhhh-----------ee
Q 011099 355 MWAPQPE---ILAHPSVGGFL--TH-CG-WNSTMESIVNGVPMIVWPLYA--EQKM---NATMLTEE-----------LR 411 (493)
Q Consensus 355 ~~~pq~~---lL~~~~~~~~i--~H-gG-~gs~~eal~~GvP~l~~P~~~--DQ~~---na~~v~e~-----------~G 411 (493)
.++|+.+ ++..++ +|| ++ .| -.++.||+++|+|.|+.-..+ |.-. |+-.+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3466544 577788 444 23 22 568999999999999976543 3211 11111 00 13
Q ss_pred eeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011099 412 VAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHEC 479 (493)
Q Consensus 412 vg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 479 (493)
+|..++ .+.+++.+++.+++.+++-++++++.++-+... .+.-+-...++++.+-+
T Consensus 273 ~G~~v~--------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~----~~~fs~~~ia~k~~~l~ 328 (331)
T PHA01630 273 VGYFLD--------PDIEDAYQKLLEALANWTPEKKKENLEGRAILY----RENYSYNAIAKMWEKIL 328 (331)
T ss_pred cccccC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHH
Confidence 454432 256788888888888642122443333333222 22444444555555444
No 142
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.03 E-value=16 Score=35.57 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=64.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeEE-EEcCCCCCCCCCCCCcchH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILDI-VLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~ 84 (493)
||+++-..+-|++.=...+.+.|++.. +.+|++++.+.+ ...+...| .++- ..++. ..+..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~-----~~l~~~~p---~id~v~~~~~-------~~~~~-- 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWC-----RPLLERMP---EIRQAIDMPL-------GHGAL-- 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhh-----HHHHhcCc---hhceeeecCC-------cccch--
Confidence 588999999999999999999999976 889999998754 33344433 2321 11111 00000
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEE
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYM 134 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~ 134 (493)
.+. ....+...+++. ++|++|.-....-...++...|+|.-.
T Consensus 64 -~~~-----~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 64 -ELT-----ERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -hhh-----HHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 000 111223334443 999999776555566677777887543
No 143
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=90.93 E-value=17 Score=35.63 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=65.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeE-EEEcCCCCCCCCCCCCcchH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILD-IVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~ 84 (493)
||+++-..+.|++.=...+.+.|+++. +.+|++++.+.+. ..+...| .++ +..++.... . ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~-----~l~~~~p---~vd~vi~~~~~~~----~--~~~- 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETI-----PILSENP---DINALYGLDRKKA----K--AGE- 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChH-----HHHhcCC---CccEEEEeChhhh----c--chH-
Confidence 588888899999999999999999976 7899999998653 3333333 332 222221000 0 000
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEE
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYM 134 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~ 134 (493)
..+.. .. .+...+++ .++|++|.-........++...|.|.-+
T Consensus 66 ~~~~~----~~-~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 RKLAN----QF-HLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHHH----HH-HHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 00111 11 12233343 3999999665555567788888998655
No 144
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.68 E-value=2.5 Score=36.07 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCC---
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIV--- 77 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~--- 77 (493)
|.+..|+|.+...|+-|--.-.+.|++.|.+. |+.|-=+-+++-++--.+. +|+.+++.......+.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~gGkR~---------GF~Ivdl~tg~~~~la~~~ 70 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREGGKRI---------GFKIVDLATGEEGILARVG 70 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecCCeEe---------eeEEEEccCCceEEEEEcC
Confidence 56677999999999999999999999999999 9999877666543322222 5666665421111000
Q ss_pred ---CCCcchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 78 ---CTDASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
+.-..+.-....+-+...+.++.+++ ..|+||.|-..+
T Consensus 71 ~~~~rvGkY~V~v~~le~i~~~al~rA~~----~aDvIIIDEIGp 111 (179)
T COG1618 71 FSRPRVGKYGVNVEGLEEIAIPALRRALE----EADVIIIDEIGP 111 (179)
T ss_pred CCCcccceEEeeHHHHHHHhHHHHHHHhh----cCCEEEEecccc
Confidence 10011111112222345556666665 389999997554
No 145
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=89.06 E-value=2.6 Score=36.12 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhh
Q 011099 16 MGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESI 95 (493)
Q Consensus 16 ~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (493)
.|=-.-+..|+++|+++ ||+|+++++......... . ......... .........+ ...
T Consensus 12 GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~~~~~~-----~----~~~~~~~~~-------~~~~~~~~~~-----~~~ 69 (177)
T PF13439_consen 12 GGAERVVLNLARALAKR-GHEVTVVSPGVKDPIEEE-----L----VKIFVKIPY-------PIRKRFLRSF-----FFM 69 (177)
T ss_dssp SHHHHHHHHHHHHHHHT-T-EEEEEESS-TTS-SST-----E----EEE---TT--------SSTSS--HHH-----HHH
T ss_pred ChHHHHHHHHHHHHHHC-CCEEEEEEcCCCccchhh-----c----cceeeeeec-------ccccccchhH-----HHH
Confidence 36667789999999999 999999987743221111 0 011111110 0011111111 123
Q ss_pred HHHHHHHHhcCCCCcEEEECC-cchhHHHHHHHcCCeEEEEecch
Q 011099 96 PALRSTISAMKYRPTALIVDL-FGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 96 ~~l~~ll~~~~~~~DlVI~D~-~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
..+..++++. ++|+|-+.. ...+....+-. ++|.+...-..
T Consensus 70 ~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 70 RRLRRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp HHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred HHHHHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 4567777776 999995443 22223333333 99988876443
No 146
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=88.49 E-value=4.9 Score=34.91 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=51.2
Q ss_pred hcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCC--CCCCCCcchHHHHHHHHHHhhHHHHHHHHhcCCC
Q 011099 31 IQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDIS--GIVCTDASLVTQIAVMMHESIPALRSTISAMKYR 108 (493)
Q Consensus 31 ~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 108 (493)
++ ||+|++++....... . .+++...+...... ...+-..++...+ ..-......+.++-++ .-.
T Consensus 1 q~-gh~v~fl~~~~~~~~------~-----~GV~~~~y~~~~~~~~~~~~~~~~~e~~~-~rg~av~~a~~~L~~~-Gf~ 66 (171)
T PF12000_consen 1 QR-GHEVVFLTERKRPPI------P-----PGVRVVRYRPPRGPTPGTHPYVRDFEAAV-LRGQAVARAARQLRAQ-GFV 66 (171)
T ss_pred CC-CCEEEEEecCCCCCC------C-----CCcEEEEeCCCCCCCCCCCcccccHHHHH-HHHHHHHHHHHHHHHc-CCC
Confidence 46 999999995543221 1 15555555442221 1101111222221 1122233344444433 458
Q ss_pred CcEEEECCcchhHHHHHHHc-CCeEEEEec
Q 011099 109 PTALIVDLFGTEAMAVADEF-EMLKYMFIA 137 (493)
Q Consensus 109 ~DlVI~D~~~~~a~~~A~~l-gIP~v~~~~ 137 (493)
||+||...-.-.++.+-+.+ ++|.+.++-
T Consensus 67 PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 67 PDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 99999999666677799999 999998753
No 147
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=87.83 E-value=8.4 Score=37.23 Aligned_cols=57 Identities=23% Similarity=0.165 Sum_probs=42.1
Q ss_pred ChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcch----hhHhhhhheeeeEEee
Q 011099 358 PQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKM----NATMLTEELRVAIRSK 417 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~----na~~v~e~~Gvg~~~~ 417 (493)
|+..+|..++. +|||=--.+-+.||+..|+|..++|.-. +.. ..+.+ ++.|+-....
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 67888988885 7788778888999999999999999876 322 22233 3557666543
No 148
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=87.10 E-value=9.8 Score=35.45 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCc
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTS 47 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 47 (493)
++|||++..=-+. |---+.+|+++|.+. | +|+++.|...+.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKI-G-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhC-C-CEEEEcCCCCCC
Confidence 3688888764322 113377899999988 7 799999887543
No 149
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.08 E-value=21 Score=34.94 Aligned_cols=105 Identities=16% Similarity=0.069 Sum_probs=67.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (493)
|+|+++-...-||+.=.+.+-..|+++. +.++++++++.+.+ ++...| .++-...-. .....
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~-----i~~~~p---~I~~vi~~~-------~~~~~-- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAP-----ILKLNP---EIDKVIIID-------KKKKG-- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHH-----HHhcCh---Hhhhhcccc-------ccccc--
Confidence 6799999999999999999999999986 79999999997533 333332 222111100 00111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEE
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYM 134 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~ 134 (493)
........+...+++. ++|+||.=.-.+=...++...++|.-.
T Consensus 65 -----~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 -----LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -----cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0011112344444443 899999777666677777788888555
No 150
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.05 E-value=15 Score=29.58 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
+|++.+.++..|.....-++..|++. |++|.++...-..+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~~~~~~l~~~ 45 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVDVPPEEIVEA 45 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 48999999999999999999999999 9999887755433333333
No 151
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=85.03 E-value=12 Score=35.36 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCC-CCC--CCCCCCCc
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC-IDI--SGIVCTDA 81 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~-~~~--~~~~~~~~ 81 (493)
..+|.+.-.|+.|--.-.=.|.+.|.++ ||+|.++.-.+...+.-.+.+. +.++...+.. +.. ... +...
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLG-----DRiRM~~~~~~~~vFiRs~-~srG 123 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILG-----DRIRMQRLAVDPGVFIRSS-PSRG 123 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccc-----cHhhHHhhccCCCeEEeec-CCCc
Confidence 3688999999999999999999999999 9999999877643332222221 2333322221 000 000 1111
Q ss_pred chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhH--HHHHHHcCCeEEE
Q 011099 82 SLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEA--MAVADEFEMLKYM 134 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a--~~~A~~lgIP~v~ 134 (493)
. ..-........-.+++.. ++|+||++.....= ..+++...+=.++
T Consensus 124 ~-----lGGlS~at~~~i~~ldAa--G~DvIIVETVGvGQsev~I~~~aDt~~~v 171 (323)
T COG1703 124 T-----LGGLSRATREAIKLLDAA--GYDVIIVETVGVGQSEVDIANMADTFLVV 171 (323)
T ss_pred c-----chhhhHHHHHHHHHHHhc--CCCEEEEEecCCCcchhHHhhhcceEEEE
Confidence 1 111233344555666666 99999999876643 3455555554444
No 152
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=43 Score=32.49 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcch
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASL 83 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 83 (493)
++.|++++..|--||--.|--=|..|+.. |.+|.++.--+... ...+-..| +|+++.++..+.-+. +...
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p---~e~l~~hp---rI~ih~m~~l~~~~~---~p~~ 80 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIP---LEELLNHP---RIRIHGMPNLPFLQG---GPRV 80 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCC---hHHHhcCC---ceEEEeCCCCcccCC---Cchh
Confidence 36899999999999999999999999999 99999998554333 22233355 899999987554332 1111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEEC-CcchhHHHH----HHHcCCeEEEEecchHH
Q 011099 84 VTQIAVMMHESIPALRSTISAMKYRPTALIVD-LFGTEAMAV----ADEFEMLKYMFIASNAW 141 (493)
Q Consensus 84 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D-~~~~~a~~~----A~~lgIP~v~~~~~~~~ 141 (493)
........-...--+-.++. -.++|.++.- +-+.+...+ ..-.|..+++=|.....
T Consensus 81 ~~l~lKvf~Qfl~Ll~aL~~--~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 81 LFLPLKVFWQFLSLLWALFV--LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHh--ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 11111111111111222222 2478877754 333333333 34457788877765543
No 153
>PLN02939 transferase, transferring glycosyl groups
Probab=83.62 E-value=33 Score=38.26 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=50.9
Q ss_pred ceeeccCCChh---hhcCCCCccccccc----CCchHHHHHHHhCCceeecccch--hcchh--hHhhhhheeeeEEeec
Q 011099 350 GLVVPMWAPQP---EILAHPSVGGFLTH----CGWNSTMESIVNGVPMIVWPLYA--EQKMN--ATMLTEELRVAIRSKE 418 (493)
Q Consensus 350 ~~~~~~~~pq~---~lL~~~~~~~~i~H----gG~gs~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~e~~Gvg~~~~~ 418 (493)
++.+..+.+.. .+++.++ +||.- +--.+.+||+++|+|.|+....+ |...+ ...+.+.-+-|...+
T Consensus 838 rV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~- 914 (977)
T PLN02939 838 NIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL- 914 (977)
T ss_pred eEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec-
Confidence 56666777764 4788888 77743 22358999999999999876544 22211 111111224455542
Q ss_pred cCCCCCccchHHHHHHHHHHhc
Q 011099 419 VPSEKSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 419 ~~~~~~~~~~~~l~~ai~~vl~ 440 (493)
.-+.+++.++|.+++.
T Consensus 915 ------~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 ------TPDEQGLNSALERAFN 930 (977)
T ss_pred ------CCCHHHHHHHHHHHHH
Confidence 2477889999988875
No 154
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.02 E-value=22 Score=34.50 Aligned_cols=82 Identities=10% Similarity=0.158 Sum_probs=61.2
Q ss_pred Cce-eeccCCC---hhhhcCCCCccccccc--CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCC
Q 011099 349 VGL-VVPMWAP---QPEILAHPSVGGFLTH--CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSE 422 (493)
Q Consensus 349 ~~~-~~~~~~p---q~~lL~~~~~~~~i~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~ 422 (493)
.++ .+.+++| +..+|..|+++.|.|. =|.|+++-.|+.|||.+.- -+=+.|-.. .+.|+=+.-.
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l--~~~~ipVlf~----- 314 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDL--KEQGIPVLFY----- 314 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHH--HhCCCeEEec-----
Confidence 355 3457887 5668999998888775 6999999999999999875 455566554 3557766543
Q ss_pred CCccchHHHHHHHHHHhc
Q 011099 423 KSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 423 ~~~~~~~~l~~ai~~vl~ 440 (493)
.+.++...|+++=+++..
T Consensus 315 ~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 315 GDELDEALVREAQRQLAN 332 (360)
T ss_pred cccCCHHHHHHHHHHHhh
Confidence 377899999998887764
No 155
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.30 E-value=3 Score=34.89 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=42.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccC
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
++++|++.+.++.+|-.-..-++..|+++ |++|+++...-..+.+.+...+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~vp~e~i~~~a~~~ 53 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMTSQEEFIDAAIET 53 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHHc
Confidence 46789999999999999999999999999 99999999876555544444433
No 156
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=82.23 E-value=16 Score=37.63 Aligned_cols=38 Identities=26% Similarity=0.208 Sum_probs=27.6
Q ss_pred CEEEEEcCC---C--ccCH-HHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 6 PHVALLASP---G--MGHL-IPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 6 ~~vl~~~~p---~--~GHv-~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
|||+++++- . .|-+ .-+-.|+++|+++ ||+|+++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~-G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAAL-GHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 578887733 1 2222 3357899999999 99999999764
No 157
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.41 E-value=37 Score=29.17 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=58.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC-chhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT-SSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
-|.+++.++.|-....+.+|-+.+.+ |++|.|+-.-... ..-+...+...+ ++.+.......... . .+. .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~---~v~~~~~g~~~~~~---~-~~~-~ 74 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERLP---NIEIHRMGRGFFWT---T-END-E 74 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhCC---CcEEEECCCCCccC---C-CCh-H
Confidence 36788888999999999999999999 9999995433221 111222333333 56666554321111 1 111 1
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
.-............+.+.. ..+|+||.|-+..
T Consensus 75 ~~~~~a~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 75 EDIAAAAEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 1122223344444555554 3899999998655
No 158
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=80.25 E-value=12 Score=34.53 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=57.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCC--CCCCCCCCCCcch
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC--IDISGIVCTDASL 83 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~ 83 (493)
|||++..=-+ =|--=+.+|+++|+ . +++|+++.|...+.-.-.+.--.. -++...+.. ..+. + ..
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~-~~dV~VVAP~~~qSg~s~slTl~~----Plr~~~~~~~~~av~-----G-TP 67 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-E-GADVTVVAPDREQSGASHSLTLHE----PLRVRQVDNGAYAVN-----G-TP 67 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-h-CCCEEEEccCCCCccccccccccc----CceeeEeccceEEec-----C-Ch
Confidence 4555554221 12233667888888 7 899999999975433222111111 122222211 1111 1 11
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECC----------c---chhHHHHHHHcCCeEEEEecc
Q 011099 84 VTQIAVMMHESIPALRSTISAMKYRPTALIVDL----------F---GTEAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 84 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~----------~---~~~a~~~A~~lgIP~v~~~~~ 138 (493)
.....-.+..++++. .||+||+-. . +.+|+.=|..+|||.|.++..
T Consensus 68 -------aDCV~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 68 -------ADCVILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred -------HHHHHHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 011222455566553 699998642 1 233445567889999998754
No 159
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=80.12 E-value=43 Score=30.05 Aligned_cols=101 Identities=8% Similarity=-0.008 Sum_probs=53.8
Q ss_pred eeeccCCChhhhcCCCCcccccccCCchHHHHHHH----hCCceeecccchhcchhh-----HhhhhheeeeEEeeccCC
Q 011099 351 LVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIV----NGVPMIVWPLYAEQKMNA-----TMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 351 ~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~----~GvP~l~~P~~~DQ~~na-----~~v~e~~Gvg~~~~~~~~ 421 (493)
+.......+..-+..++ ++|.--+.-.+.+.++ .|++.-+ .|.+..+ +.+ +.-++-+.+.+-.
T Consensus 56 i~~~~~~~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G- 127 (202)
T PRK06718 56 IRWKQKEFEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDG- 127 (202)
T ss_pred EEEEecCCChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCC-
Confidence 33333333445567777 8888777776666655 4554333 3443332 222 2323333332110
Q ss_pred CCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKA 461 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a 461 (493)
....-+..|++.|.+++ .+...++-+.+.++++.+++.
T Consensus 128 -~sP~la~~lr~~ie~~~-~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 128 -ASPKLAKKIRDELEALY-DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred -CChHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHHHHh
Confidence 12233566777777776 334455777778888887764
No 160
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=80.08 E-value=16 Score=35.90 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=66.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeEEE-EcCCCCCCCCCCCCcch
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILDIV-LLPCIDISGIVCTDASL 83 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~-~l~~~~~~~~~~~~~~~ 83 (493)
|+|+++-..+.||+.=...+.+.|+++. +.+|++++.+.+ ...++..| .++.. .++. .....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~-----~~l~~~~P---~vd~vi~~~~-------~~~~~- 64 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWC-----RPLLSRMP---EVNEAIPMPL-------GHGAL- 64 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhh-----HHHHhcCC---ccCEEEeccc-------ccchh-
Confidence 5799999999999999999999999976 899999998764 33344443 33321 1211 00000
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEE
Q 011099 84 VTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYM 134 (493)
Q Consensus 84 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~ 134 (493)
.+. ....+...+++ .++|++|.-....-...++...|+|.-.
T Consensus 65 --~~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 65 --EIG-----ERRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --hhH-----HHHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 01122233443 3899999766555566777888888554
No 161
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=80.02 E-value=39 Score=29.98 Aligned_cols=103 Identities=8% Similarity=0.014 Sum_probs=62.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC-chhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT-SSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (493)
=.|.+++..+.|-....+.+|-+...+ |++|.++-.-... ..-+...+...+ ++.+......-... . .+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~~--~--~~~- 93 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTWE--T--QDR- 93 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCccc--C--CCc-
Confidence 468899999999999999999999999 9999998754322 112223333332 56666555321111 1 111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
..-............+.+.. ..+|+||.|-+..
T Consensus 94 ~e~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 94 ERDIAAAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11122233344444555543 4899999998654
No 162
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=79.85 E-value=36 Score=32.61 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=56.0
Q ss_pred eeccCCC---hhhhcCCCCccccccc--CCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCcc
Q 011099 352 VVPMWAP---QPEILAHPSVGGFLTH--CGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVV 426 (493)
Q Consensus 352 ~~~~~~p---q~~lL~~~~~~~~i~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~ 426 (493)
++..++| +..+|+.++++.|+|+ =|.||++-.++.|||.++- -+=+.|... . +.|+-+-.+ .+.+
T Consensus 210 ~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl-~-e~gv~Vlf~-----~d~L 279 (322)
T PRK02797 210 ILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDL-T-EQGLPVLFT-----GDDL 279 (322)
T ss_pred ehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHH-H-hCCCeEEec-----CCcc
Confidence 4557776 5679999999888886 5899999999999999986 344566654 2 557666433 2567
Q ss_pred chHHHHHHHHHHh
Q 011099 427 ERGEIEMMVRRIV 439 (493)
Q Consensus 427 ~~~~l~~ai~~vl 439 (493)
+...+.++=+++.
T Consensus 280 ~~~~v~e~~rql~ 292 (322)
T PRK02797 280 DEDIVREAQRQLA 292 (322)
T ss_pred cHHHHHHHHHHHH
Confidence 7777776644443
No 163
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=79.70 E-value=30 Score=32.28 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCc
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTS 47 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 47 (493)
|||++.-=-+. |---+..|+++|++ +|+|+++.|...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~--~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK--YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh--CCcEEEEccCCCCc
Confidence 56666653322 11227788888864 57999999987544
No 164
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=79.35 E-value=38 Score=34.55 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=55.9
Q ss_pred eeeccCCC--hhhhcCCCCcccccccCC--chHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCcc
Q 011099 351 LVVPMWAP--QPEILAHPSVGGFLTHCG--WNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVV 426 (493)
Q Consensus 351 ~~~~~~~p--q~~lL~~~~~~~~i~HgG--~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~ 426 (493)
++..++.+ -.+++..|++-+-|+||. .+++.||+.+|+|++..=.... +...+ .. |.... .-
T Consensus 331 vly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~-------~~ 396 (438)
T TIGR02919 331 KLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFE-------HN 396 (438)
T ss_pred EEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---Cceec-------CC
Confidence 44556566 367999999888899976 6799999999999998743322 22333 23 44432 23
Q ss_pred chHHHHHHHHHHhcccc
Q 011099 427 ERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 427 ~~~~l~~ai~~vl~~~~ 443 (493)
+.+++.++|.++|.+++
T Consensus 397 ~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 397 EVDQLISKLKDLLNDPN 413 (438)
T ss_pred CHHHHHHHHHHHhcCHH
Confidence 67999999999998864
No 165
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=79.18 E-value=27 Score=32.53 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCc
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTS 47 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 47 (493)
|||++..=-+. |---+.+|+++|++ +|+|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~--~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE--KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh--CCcEEEEccCCCCc
Confidence 46666653333 22336788888864 57999999987543
No 166
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=77.43 E-value=4.2 Score=42.41 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=53.8
Q ss_pred ceeeccCCCh---hhhcCCCCcccccccC---CchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 350 GLVVPMWAPQ---PEILAHPSVGGFLTHC---GWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 350 ~~~~~~~~pq---~~lL~~~~~~~~i~Hg---G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
.+.+.++.+. ...+.++. ++|.=+ |.++..||+.+|+|+| .......| +...=|..++
T Consensus 410 ~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li~------ 473 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYIID------ 473 (519)
T ss_pred EEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEeC------
Confidence 4666676662 44677777 777655 7889999999999999 33444455 4544565543
Q ss_pred CccchHHHHHHHHHHhcccc
Q 011099 424 SVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~ 443 (493)
+..+|.++|..+|.+.+
T Consensus 474 ---d~~~l~~al~~~L~~~~ 490 (519)
T TIGR03713 474 ---DISELLKALDYYLDNLK 490 (519)
T ss_pred ---CHHHHHHHHHHHHhCHH
Confidence 56899999999998863
No 167
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.49 E-value=47 Score=31.09 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=53.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
|+|+++. ++|. -..|++.|.++ ||+|+..+...+.... +... ...... . +. +
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~-g~~v~~s~~t~~~~~~----~~~~---g~~~v~-~------g~------l-- 52 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQ-GIEILVTVTTSEGKHL----YPIH---QALTVH-T------GA------L-- 52 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhC-CCeEEEEEccCCcccc----cccc---CCceEE-E------CC------C--
Confidence 4566654 4443 67899999999 9999988877542211 1100 001110 0 00 0
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchh------HHHHHHHcCCeEEEEe
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALIVDLFGTE------AMAVADEFEMLKYMFI 136 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~------a~~~A~~lgIP~v~~~ 136 (493)
....+.+++.+. ++|+||--..-++ +..+++++|||++.|-
T Consensus 53 --------~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 --------DPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred --------CHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 112355666665 8998774332222 4468999999999974
No 168
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=76.04 E-value=40 Score=31.62 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=26.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCc
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTS 47 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 47 (493)
|||++..=-+. |---+.+|+++|... | +|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~-g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPL-G-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhC-C-cEEEEccCCCCc
Confidence 45666553333 234478899999988 7 799999887543
No 169
>PRK05973 replicative DNA helicase; Provisional
Probab=75.60 E-value=21 Score=32.90 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=38.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSK 53 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~ 53 (493)
--+++...|+.|=-.-.+.++...+.+ |..|.|++.+.....+....
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHH
Confidence 346788889999999999999999989 99999999998765544443
No 170
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=75.04 E-value=26 Score=32.44 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccCHHH-HHHHHHHHHhcCCceEEEEEcCCCCch
Q 011099 6 PHVALLASPGMGHLIP-VLELGKRLVIQNNHHATIFVVANDTSS 48 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P-~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 48 (493)
|||++.-=- |--.| +.+|+++|++. | +|+++.|...+..
T Consensus 1 M~ILltNDD--Gi~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 1 MKILLTNDD--GIHSPGIRALYQALKEL-G-EVTVVAPARQRSG 40 (244)
T ss_pred CeEEEECCC--CCCCHhHHHHHHHHHhC-C-CEEEEeCCCCccc
Confidence 456655432 33333 67899999998 8 8999999875443
No 171
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=74.79 E-value=14 Score=38.00 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=63.8
Q ss_pred cCCChhhh---cCCCCcccccc---cCCch-HHHHHHHhCCc----eeecccchhcchhhHhhhhheeeeEEeeccCCCC
Q 011099 355 MWAPQPEI---LAHPSVGGFLT---HCGWN-STMESIVNGVP----MIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 355 ~~~pq~~l---L~~~~~~~~i~---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
+.+++.++ +..++ +|+. +=|+| +..||+++|+| +|+--+.+ .+..+ +-|..++
T Consensus 342 ~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVn------ 405 (456)
T TIGR02400 342 RSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVN------ 405 (456)
T ss_pred CCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEEC------
Confidence 45666554 56677 5554 44654 77899999999 65554432 22223 2355542
Q ss_pred CccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011099 424 SVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECE 480 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 480 (493)
..+.++++++|.++|+.+. ++.+++.+++++.+.+ -+...-+++|++++.
T Consensus 406 -P~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 406 -PYDIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred -CCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 3578999999999998653 2255566666665433 344556677776653
No 172
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=74.25 E-value=9.7 Score=39.14 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=58.5
Q ss_pred eccCCChhhh---cCCCCcccccc---cCCch-HHHHHHHhCCc----eeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 353 VPMWAPQPEI---LAHPSVGGFLT---HCGWN-STMESIVNGVP----MIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 353 ~~~~~pq~~l---L~~~~~~~~i~---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
+.+++++.++ +..++ +||. +-|+| ++.||+++|+| +|+--..+ .+. ...-|..+
T Consensus 345 ~~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~----~~~~g~lv----- 409 (460)
T cd03788 345 LYRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAE----ELSGALLV----- 409 (460)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEecccc----chh----hcCCCEEE-----
Confidence 3467777654 77788 5552 44655 67899999999 44432221 111 11124443
Q ss_pred CCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011099 422 EKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHEC 479 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 479 (493)
...+.++++++|.++++++. ++.+.+.++.++.+++ -+...-+++++.++
T Consensus 410 --~p~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 410 --NPYDIDEVADAIHRALTMPL-EERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred --CCCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 23478999999999998653 1133333444433322 34445556666554
No 173
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=73.91 E-value=15 Score=32.55 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=47.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcC-CceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHH
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQN-NHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQ 86 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 86 (493)
++-+=..+.|-++-...|+++|.++. |++|.+-++...........+.. .+...-+|. +
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-----~v~~~~~P~---D------------ 82 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-----RVDVQYLPL---D------------ 82 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-----G-SEEE------S------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-----CeEEEEeCc---c------------
Confidence 33333467799999999999999875 78888777654322222222111 111111221 0
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEE-ECCcchhHH-HHHHHcCCeEEEEec
Q 011099 87 IAVMMHESIPALRSTISAMKYRPTALI-VDLFGTEAM-AVADEFEMLKYMFIA 137 (493)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~~DlVI-~D~~~~~a~-~~A~~lgIP~v~~~~ 137 (493)
....+...++.+ +||++| ++.-.++.. ..|++.|||.+.+..
T Consensus 83 -------~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -------FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 111346677788 899988 555444454 488999999998764
No 174
>PRK06321 replicative DNA helicase; Provisional
Probab=73.14 E-value=14 Score=37.92 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=38.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
-+++..-|+.|=-.-.+.+|...+ +. |..|.|++.+.....+....+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~-g~~v~~fSLEMs~~ql~~Rlla 276 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQN-RLPVGIFSLEMTVDQLIHRIIC 276 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHH
Confidence 467788899999999999999887 46 8999999999766655554443
No 175
>PRK14099 glycogen synthase; Provisional
Probab=72.49 E-value=57 Score=33.82 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCCEEEEEcC--------CCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 4 RKPHVALLAS--------PGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 4 ~~~~vl~~~~--------p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
++|+|++++. |+.|++ +-+|.++|+++ ||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~-g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAH-GVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHC-CCcEEEEeCCC
Confidence 5699999873 333444 56788999999 99999999864
No 176
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.45 E-value=6 Score=32.08 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=27.2
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhcCCceEEEEEcCCC
Q 011099 6 PHVALLASPGMG---HLIPVLELGKRLVIQNNHHATIFVVAND 45 (493)
Q Consensus 6 ~~vl~~~~p~~G---Hv~P~l~LA~~L~~r~Gh~Vt~~~~~~~ 45 (493)
|+|+|+.-|-.+ .-.-.++|+.+-++| ||+|.++.+.+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCcE
Confidence 567888777554 345678999999999 999999998864
No 177
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.04 E-value=32 Score=32.37 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=34.2
Q ss_pred eeeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeeccc
Q 011099 351 LVVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPL 395 (493)
Q Consensus 351 ~~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~ 395 (493)
+++..-++-.+|+.+++ .+||-.+ ..-.||+.+|+|.+++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 44456778889999999 8888766 477899999999999753
No 178
>PRK05595 replicative DNA helicase; Provisional
Probab=71.77 E-value=9.5 Score=39.01 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=38.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhccC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
-+++...|+.|=-.-.+.+|..++ +. |+.|.|++.+.....+....+..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~-g~~vl~fSlEms~~~l~~R~~a~ 252 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALRE-GKSVAIFSLEMSKEQLAYKLLCS 252 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHH
Confidence 356788899999999999998775 67 89999999997666555554443
No 179
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.22 E-value=78 Score=28.44 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=51.7
Q ss_pred hhhcCCCCcccccccCCchHHHH-----HHHhCCceee--cccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHH
Q 011099 360 PEILAHPSVGGFLTHCGWNSTME-----SIVNGVPMIV--WPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIE 432 (493)
Q Consensus 360 ~~lL~~~~~~~~i~HgG~gs~~e-----al~~GvP~l~--~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~ 432 (493)
...|..+. ++|..-|...+.+ |-..|+|.-+ -|-..| +..-+.+ +.-++-+.+.+-. ....-+..|+
T Consensus 64 ~~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G--~sP~la~~lr 137 (205)
T TIGR01470 64 ADILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGG--AAPVLARLLR 137 (205)
T ss_pred HHHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCC--CCcHHHHHHH
Confidence 34466677 8888888764444 3456788743 333333 2222233 2323333332111 1233456788
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 011099 433 MMVRRIVAEKQGHAIRNRVEELKHSAQKA 461 (493)
Q Consensus 433 ~ai~~vl~~~~~~~~r~~a~~l~~~~~~a 461 (493)
+.|++.+.. +...+-+.+.++++.+++.
T Consensus 138 ~~ie~~l~~-~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 138 ERIETLLPP-SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHhcch-hHHHHHHHHHHHHHHHHhh
Confidence 888888753 3344677777777777664
No 180
>PRK12342 hypothetical protein; Provisional
Probab=70.99 E-value=54 Score=30.62 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ch-hhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHH
Q 011099 22 VLELGKRLVIQNNHHATIFVVANDT--SS-EQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPAL 98 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~~~--~~-v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (493)
.+..|-+|++. |.+||+++-.... .. +.+..+..-. ...+. +....+ .+.+. ......+
T Consensus 40 AlE~AlrLk~~-g~~Vtvls~Gp~~a~~~~l~r~alamGa-D~avl---i~d~~~-----~g~D~--------~ata~~L 101 (254)
T PRK12342 40 AIEAASQLATD-GDEIAALTVGGSLLQNSKVRKDVLSRGP-HSLYL---VQDAQL-----EHALP--------LDTAKAL 101 (254)
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCChHhHHHHHHHHHHcCC-CEEEE---EecCcc-----CCCCH--------HHHHHHH
Confidence 46777788877 8999999866543 22 2232222210 01222 211111 11222 1122345
Q ss_pred HHHHHhcCCCCcEEEECCcchh------HHHHHHHcCCeEEEEec
Q 011099 99 RSTISAMKYRPTALIVDLFGTE------AMAVADEFEMLKYMFIA 137 (493)
Q Consensus 99 ~~ll~~~~~~~DlVI~D~~~~~------a~~~A~~lgIP~v~~~~ 137 (493)
...+++. +||+|++-..+.. +..+|+.||+|++.+..
T Consensus 102 a~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 102 AAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 5566665 7999997643332 56799999999998754
No 181
>PRK08506 replicative DNA helicase; Provisional
Probab=70.93 E-value=15 Score=37.91 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=39.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
-+++...|+.|=-.-.+.+|...... |+.|.|++.+.....+....+.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql~~Rlla 241 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQLMLRMLS 241 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHHHHHHHH
Confidence 46778889999999999999999888 9999999999876665555444
No 182
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=70.33 E-value=74 Score=29.61 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCc
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTS 47 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 47 (493)
|||++.-=-+. |---+.+|+++|++. |+|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~--~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL--ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC--CCEEEEeCCCCCc
Confidence 46666653322 223377899999887 5899999987543
No 183
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=68.75 E-value=8 Score=34.40 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
|..+.++|++-..|+-|=+.-...+.+.|+++ ||+|+++.++.
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 55566788888777655555479999999999 99999999885
No 184
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=68.44 E-value=67 Score=30.04 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCcEEEECCcch------hHHHHHHHcCCeEEEEecc
Q 011099 97 ALRSTISAMKYRPTALIVDLFGT------EAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~------~a~~~A~~lgIP~v~~~~~ 138 (493)
.+...+++. +||+|++-..+. -+..+|+.||+|++.+...
T Consensus 103 ~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 455566665 799999764332 3567999999999987543
No 185
>PRK05636 replicative DNA helicase; Provisional
Probab=67.46 E-value=9.8 Score=39.47 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=38.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhccC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
-|++...|+.|--.-.+.+|...+ +. |..|.|++.+.....+....+..
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~-g~~v~~fSlEMs~~ql~~R~ls~ 316 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKH-NKASVIFSLEMSKSEIVMRLLSA 316 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEeeCCHHHHHHHHHHH
Confidence 467788899999999999998876 56 78999999988766655554443
No 186
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=67.34 E-value=8.7 Score=38.12 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=57.2
Q ss_pred cee-eccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcchhhHhhh---hheeeeEEeeccCCCCCc
Q 011099 350 GLV-VPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLT---EELRVAIRSKEVPSEKSV 425 (493)
Q Consensus 350 ~~~-~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~---e~~Gvg~~~~~~~~~~~~ 425 (493)
+++ +....+-.++|..++ +.||--. ..+.|.+..++|+|......|.+...+-+. +....|.. .
T Consensus 253 ~i~~~~~~~~~~~ll~~aD--iLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~---------~ 320 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAAD--ILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPI---------V 320 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-E---------E
T ss_pred cEEECCCCCCHHHHHHhcC--EEEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCce---------e
Confidence 443 345567889999999 9999885 588999999999998876666553221110 11122222 2
Q ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 011099 426 VERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQK 460 (493)
Q Consensus 426 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 460 (493)
-+.++|.++|+.++.++. .++++-++..+..-.
T Consensus 321 ~~~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 321 YNFEELIEAIENIIENPD--EYKEKREKFRDKFFK 353 (369)
T ss_dssp SSHHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC
Confidence 467999999999887643 245555555555433
No 187
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=66.68 E-value=21 Score=36.12 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=38.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
-+++...|+.|=-.-.+.+|..++ +. |+.|.|++.+.....+....+.
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlEm~~~~l~~Rl~~ 244 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLEMSAEQLGERLLA 244 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHH
Confidence 467788899999999999998887 67 8999999988766655554443
No 188
>PRK08760 replicative DNA helicase; Provisional
Probab=65.34 E-value=21 Score=36.77 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=38.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
-+++...|+.|=-.-.+.+|...+ +. |+.|.|++.+.....+....+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~-g~~V~~fSlEMs~~ql~~Rl~a 279 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKS-KKGVAVFSMEMSASQLAMRLIS 279 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhc-CCceEEEeccCCHHHHHHHHHH
Confidence 467788899999999999999886 56 8999999998876655555443
No 189
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.38 E-value=13 Score=35.21 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=49.6
Q ss_pred eeccCCChhhhcCCCCcccccccCCchHHHHHHHhCCceeecccchhcch--hhHhhhhheeeeEEeeccCCCCCccchH
Q 011099 352 VVPMWAPQPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVWPLYAEQKM--NATMLTEELRVAIRSKEVPSEKSVVERG 429 (493)
Q Consensus 352 ~~~~~~pq~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~v~e~~Gvg~~~~~~~~~~~~~~~~ 429 (493)
++..|-...++|.+++ +.|--.|- .+-.++--|||.|.+|-.+-|+. .|.+=..-+|+.+.+- .-.+.
T Consensus 298 l~lsqqsfadiLH~ad--aalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv-------~~~aq 367 (412)
T COG4370 298 LWLSQQSFADILHAAD--AALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV-------RPEAQ 367 (412)
T ss_pred EEEeHHHHHHHHHHHH--HHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec-------CCchh
Confidence 3336666677777777 55544331 23346778999999999998864 4444323457776653 11333
Q ss_pred HHHHHHHHHhcccc
Q 011099 430 EIEMMVRRIVAEKQ 443 (493)
Q Consensus 430 ~l~~ai~~vl~~~~ 443 (493)
.-..+.+++|.|+.
T Consensus 368 ~a~~~~q~ll~dp~ 381 (412)
T COG4370 368 AAAQAVQELLGDPQ 381 (412)
T ss_pred hHHHHHHHHhcChH
Confidence 33444555999876
No 190
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=64.14 E-value=74 Score=32.44 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+.+++. +||++|.... ...+|+++|||++.+.
T Consensus 368 e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 456666666 8999999874 5678999999988753
No 191
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=64.13 E-value=29 Score=36.42 Aligned_cols=80 Identities=13% Similarity=0.010 Sum_probs=45.6
Q ss_pred ChhhhcCCCCcccccc---cCCch-HHHHHHHhCCceeecccch-hcchhhHhhhhhe-eeeEEeeccCCCCCccchHHH
Q 011099 358 PQPEILAHPSVGGFLT---HCGWN-STMESIVNGVPMIVWPLYA-EQKMNATMLTEEL-RVAIRSKEVPSEKSVVERGEI 431 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~---HgG~g-s~~eal~~GvP~l~~P~~~-DQ~~na~~v~e~~-Gvg~~~~~~~~~~~~~~~~~l 431 (493)
+..+++.-++ +||. +=|+| +..||+++|+|.|+-...+ ... +..+...- ..|+.+...+.+.-.-+.++|
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 4667777788 4544 34544 8999999999999986532 111 12221111 245555311000112346788
Q ss_pred HHHHHHHhcc
Q 011099 432 EMMVRRIVAE 441 (493)
Q Consensus 432 ~~ai~~vl~~ 441 (493)
++++.+++..
T Consensus 543 a~~m~~~~~~ 552 (590)
T cd03793 543 TQYMYEFCQL 552 (590)
T ss_pred HHHHHHHhCC
Confidence 8888888754
No 192
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=63.38 E-value=58 Score=33.02 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=52.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCC----CchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAND----TSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDAS 82 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~----~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 82 (493)
++.++..+.. .+.+++.|.+- |-+|..+++... .+..... .... . . .. ..+.+
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~el-Gmevv~~~t~~~~~~~~~~~~~~-~~~~-----------~---~-~v-~~~~d 343 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLES-GADVPYVGTAIPRTAWGAEDKRW-LEML-----------G---V-EV-KYRAS 343 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHC-CCEEEEEecCCCCccccHHHHHH-HHhc-----------C---C-Cc-eeccC
Confidence 5666666644 88889999998 999998866631 1111111 1000 0 0 00 11111
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 83 LVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
+.. .+ +.+++. +||++|.... +..+|+++|||++.+.
T Consensus 344 l~~-----------~~-~~l~~~--~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 344 LED-----------DM-EAVLEF--EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred HHH-----------HH-HHHhhC--CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 111 11 344555 9999998853 5568999999998853
No 193
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=63.35 E-value=10 Score=31.18 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=34.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
+||++...|+.+=+. ...+.++|+++ |++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCcHHHHhhhh
Confidence 578888888877777 99999999999 9999999988644444443
No 194
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=61.04 E-value=17 Score=29.21 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=33.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
.++++.+.+..-|-.-+..|+..|+++ ||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCC
Confidence 378999999999999999999999999 9999998554
No 195
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=60.97 E-value=91 Score=27.30 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=54.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCce--EEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcch
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHH--ATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASL 83 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~--Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 83 (493)
|||+|+..++. ..+..+.++|.++ +|+ +..+.+..........-... ++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~~~~~~~~~~~~~~-----~~~~~~~~~~~----------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITNPDKPRGRSRAIKN-----GIPAQVADEKN----------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEESSTTTHHHHHHHHT-----THHEEEHHGGG-----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEeccccccccccccccC-----CCCEEeccccC-----------
Confidence 68888866554 5567778899999 887 55555443333211111111 11211111100
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcc-hhHHHHHHHcCCeEEEEecc
Q 011099 84 VTQIAVMMHESIPALRSTISAMKYRPTALIVDLFG-TEAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 84 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~-~~a~~~A~~lgIP~v~~~~~ 138 (493)
........+.+.+.++++ +||++|+-.+. .-...+-+.....++-++++
T Consensus 61 ----~~~~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 ----FQPRSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ----SSSHHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ----CCchHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000112334567778887 99999876543 22334456666677777654
No 196
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=60.82 E-value=28 Score=30.11 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHhcCCCCcEEEECCcchhHH-H--H--HHHc-CCeEEEEec
Q 011099 91 MHESIPALRSTISAMKYRPTALIVDLFGTEAM-A--V--ADEF-EMLKYMFIA 137 (493)
Q Consensus 91 ~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~-~--~--A~~l-gIP~v~~~~ 137 (493)
.....+.+.+++++. +||+||+...+...+ . + ...+ ++|++.+.+
T Consensus 74 ~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 74 SRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 344555778888887 999999998765444 2 1 2223 477766543
No 197
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=60.79 E-value=83 Score=32.53 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=66.8
Q ss_pred eeeccCCChhhh---cCCCCcccccc--cCCchHHH-HHHHhCC----ceeecccchhcchhhHhhhhheeeeEEeeccC
Q 011099 351 LVVPMWAPQPEI---LAHPSVGGFLT--HCGWNSTM-ESIVNGV----PMIVWPLYAEQKMNATMLTEELRVAIRSKEVP 420 (493)
Q Consensus 351 ~~~~~~~pq~~l---L~~~~~~~~i~--HgG~gs~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~ 420 (493)
..+.+.+|+.++ +.-+++ ++|| .-|+|-+. |.++++. |+|.==+. -|+ +.+.-++.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa---~~l~~AllV---- 430 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA---VELKGALLT---- 430 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch---hhcCCCEEE----
Confidence 455577887764 445664 4444 45888655 9999987 44443221 111 233335554
Q ss_pred CCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 011099 421 SEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECEN 481 (493)
Q Consensus 421 ~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 481 (493)
+..+.++++++|.++|+.+.. +-++|.+++.+.++. -.+..=.++|++++..
T Consensus 431 ---NP~d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 431 ---NPYDPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred ---CCCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 346889999999999987642 245566666655444 2334567778777764
No 198
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.65 E-value=1.5e+02 Score=27.80 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=50.8
Q ss_pred CceeeccCCC---hhhhcCCCCccccccc---CCchH-HHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCC
Q 011099 349 VGLVVPMWAP---QPEILAHPSVGGFLTH---CGWNS-TMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPS 421 (493)
Q Consensus 349 ~~~~~~~~~p---q~~lL~~~~~~~~i~H---gG~gs-~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~ 421 (493)
.++...++++ ...++..++ +++.- .|.|. +.||+++|+|.|.... ......+ ...+.|. +.
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~---- 324 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LV---- 324 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ec----
Confidence 4566678888 344566676 55544 35544 5999999999976543 3333333 2332355 32
Q ss_pred CCCccchHHHHHHHHHHhccc
Q 011099 422 EKSVVERGEIEMMVRRIVAEK 442 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~vl~~~ 442 (493)
...+.+++..++..++++.
T Consensus 325 --~~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 325 --PPGDVEELADALEQLLEDP 343 (381)
T ss_pred --CCCCHHHHHHHHHHHhcCH
Confidence 2226799999999998775
No 199
>PRK05748 replicative DNA helicase; Provisional
Probab=59.05 E-value=37 Score=34.74 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=38.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKL 54 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~ 54 (493)
-+++...|+.|=-.-.+.+|...+ +. |+.|.|++.+.....+....+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~-g~~v~~fSlEms~~~l~~R~l 252 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKT-DKNVAIFSLEMGAESLVMRML 252 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhC-CCeEEEEeCCCCHHHHHHHHH
Confidence 467888899999999999999876 57 899999999987666555544
No 200
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=58.66 E-value=1.1e+02 Score=30.95 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 100 STISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 100 ~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
+.+++. +||++|.... +..+|+++|||++.+.
T Consensus 344 ~~~~~~--~pDl~Ig~s~---~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEY--RPDLAIGTTP---LVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhc--CCCEEEeCCh---hhHHHHHhCCCEEEec
Confidence 344455 9999998843 6678999999998853
No 201
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=58.14 E-value=37 Score=34.56 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=38.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEEEcCCCCchhhhhhcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVI-QNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~-r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
-+++...|+.|=-.-.+.+|..++. . |+.|.|++.+.....+......
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~-g~~vl~~SlEm~~~~i~~R~~~ 245 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKE-GKPVAFFSLEMSAEQLAMRMLS 245 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCeEEEEeCcCCHHHHHHHHHH
Confidence 4677888999999999999998774 6 8999999999876665555443
No 202
>PRK08006 replicative DNA helicase; Provisional
Probab=57.72 E-value=53 Score=33.86 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=39.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhccC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
-|++..-|+.|=-.-.+.+|...+ +. |+.|.|++.+.....+....+..
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~fSlEM~~~ql~~Rlla~ 275 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIFSLEMPGEQIMMRMLAS 275 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHHH
Confidence 467788899999999999999886 56 89999999997766655555544
No 203
>PHA02542 41 41 helicase; Provisional
Probab=57.64 E-value=39 Score=34.80 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=37.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhh
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSK 53 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~ 53 (493)
-+++..-|+.|=-.-.+.+|...++. |+.|.|++-+.....+....
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHH
Confidence 36777889999999999999999888 99999999887655544433
No 204
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=56.59 E-value=53 Score=30.58 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=53.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
|||+++.--+.| ..|++.|.++ |+ |.+-+..++......... + ...... + ..+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~-g~-v~~sv~t~~g~~~~~~~~---~---~~~v~~-------G--~lg----- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEA-GY-VIVSVATSYGGELLKPEL---P---GLEVRV-------G--RLG----- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhc-CC-EEEEEEhhhhHhhhcccc---C---CceEEE-------C--CCC-----
Confidence 577777644444 4789999999 88 666555544322111100 0 111100 0 000
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEE--ECCcchh----HHHHHHHcCCeEEEEe
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALI--VDLFGTE----AMAVADEFEMLKYMFI 136 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI--~D~~~~~----a~~~A~~lgIP~v~~~ 136 (493)
..+.+.+++++- ++++|| +.+|..- +..+|+++|||++.|.
T Consensus 54 --------~~~~l~~~l~~~--~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 --------DEEGLAEFLREN--GIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred --------CHHHHHHHHHhC--CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 223556666665 899888 3343322 4569999999999975
No 205
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.46 E-value=15 Score=35.44 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
|.+++|+|+++-.|+.| ..+|..|++. ||+|+++....
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHHC-CCeEEEEEeCC
Confidence 77788999999888877 4577889999 99999998764
No 206
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=56.15 E-value=55 Score=29.64 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=26.8
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhcCCceEEEEEc
Q 011099 8 VALLAS-PGMGHLIPVLELGKRLVIQNNHHATIFVV 42 (493)
Q Consensus 8 vl~~~~-p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~ 42 (493)
|.+.+. ...|--.-.+.|++.|+++ |++|.++=|
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~-g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREA-GYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHc-CCceEEEee
Confidence 344433 4459999999999999999 999988764
No 207
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=55.66 E-value=1.2e+02 Score=28.39 Aligned_cols=99 Identities=9% Similarity=-0.010 Sum_probs=48.6
Q ss_pred HHHHHHHHHhc-C-CceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHH
Q 011099 22 VLELGKRLVIQ-N-NHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALR 99 (493)
Q Consensus 22 ~l~LA~~L~~r-~-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 99 (493)
+.+|+++|... . |++|+++.|...+.-.-.+ +... ..++...+.. .. ..-.+... . . ..-.+.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~gha-iT~~---~pl~~~~~~~-~~--yav~GTPa--D---C---V~lal~ 80 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHC-ISYT---HPMMIAELGP-RR--FAAEGSPA--D---C---VLAALY 80 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCccc-ccCC---CCeEEEEeCC-Ce--EEEcCchH--H---H---HHHHHH
Confidence 45666777652 1 4899999998754332222 1111 2345444431 10 00011111 0 0 111223
Q ss_pred HHHHhcCCCCcEEEEC----------Ccc---hhHHHHHHHcCCeEEEEec
Q 011099 100 STISAMKYRPTALIVD----------LFG---TEAMAVADEFEMLKYMFIA 137 (493)
Q Consensus 100 ~ll~~~~~~~DlVI~D----------~~~---~~a~~~A~~lgIP~v~~~~ 137 (493)
.++.. .+||+||+- .++ .+|+.-|..+|||.+.++.
T Consensus 81 ~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 81 DVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 33421 379999963 222 2344567788999999875
No 208
>PRK06749 replicative DNA helicase; Provisional
Probab=55.35 E-value=39 Score=34.31 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=40.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
-|++..-|+.|=-.-.+.+|...+.. |+.|.|++.+.....+....+..
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs~~ql~~R~ls~ 236 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMSSKQLLKRMASC 236 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCCHHHHHHHHHHh
Confidence 46778889999999999999999988 99999999997766655555544
No 209
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=55.17 E-value=53 Score=29.38 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhc
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKL 54 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~ 54 (493)
+++|.+-..|+-|-.+-|+.=|..|+++ |.+|.+..-+.....-....+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vethgR~et~~l~ 53 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETHGRPETEALL 53 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---TT-HHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCCCcHHHHHHH
Confidence 5789999999999999999999999999 999999887755433333333
No 210
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=54.53 E-value=1.5e+02 Score=30.79 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=70.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCC-C-----CCCCeEEEEcCCCCCCCCCCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNS-P-----DYDILDIVLLPCIDISGIVCT 79 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~-~-----~~~~i~~~~l~~~~~~~~~~~ 79 (493)
--+++...|+.|--.-.+.++...+++ |..|.+++.++..+.+.+..-..- + ....+.+..... .
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p--------~ 334 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYP--------E 334 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccc--------c
Confidence 457888899999999999999999999 999999999987666544422110 0 000133322211 1
Q ss_pred CcchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhH---------------HHHHHHcCCeEEEEecc
Q 011099 80 DASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEA---------------MAVADEFEMLKYMFIAS 138 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a---------------~~~A~~lgIP~v~~~~~ 138 (493)
.... ......+.+.+++. ++++||.|.+...- ...++..|+..+....+
T Consensus 335 ~~~~--------~~~~~~i~~~i~~~--~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~~ 398 (484)
T TIGR02655 335 SAGL--------EDHLQIIKSEIADF--KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTS 398 (484)
T ss_pred cCCh--------HHHHHHHHHHHHHc--CCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeecc
Confidence 0111 22333445556665 89999999866321 12456777887776543
No 211
>PRK11519 tyrosine kinase; Provisional
Probab=54.32 E-value=1.5e+02 Score=32.51 Aligned_cols=118 Identities=10% Similarity=0.034 Sum_probs=65.5
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh-hccCCC------C-------------CCC
Q 011099 5 KPHVALLA--SPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS-KLVNSP------D-------------YDI 62 (493)
Q Consensus 5 ~~~vl~~~--~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~-~~~~~~------~-------------~~~ 62 (493)
+.++++++ .|+.|--.-...||..|+.. |++|.++-..-....+... +....+ . ..+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 44555555 46779999999999999999 9999998655332222211 111100 0 011
Q ss_pred eEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCc--c--hhHHHHHHHcCCeEEEEec
Q 011099 63 LDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLF--G--TEAMAVADEFEMLKYMFIA 137 (493)
Q Consensus 63 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~--~--~~a~~~A~~lgIP~v~~~~ 137 (493)
+.+.... ....+..+.+ ....+.++++.+..++|.||+|.- . ..+..+|...+..++++..
T Consensus 604 l~~lp~g--------~~~~~~~ell------~s~~~~~ll~~l~~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~ 668 (719)
T PRK11519 604 FDLIPRG--------QVPPNPSELL------MSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARY 668 (719)
T ss_pred EEEEeCC--------CCCCCHHHHh------hHHHHHHHHHHHHhcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeC
Confidence 1111110 0001221111 233566666666568999999942 2 2356688888877666543
No 212
>PRK08840 replicative DNA helicase; Provisional
Probab=53.91 E-value=64 Score=33.20 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=39.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhccC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
-+++..-|+.|--.-.+.+|...+ +. |+.|.|++.+.....+....+..
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~-~~~v~~fSlEMs~~ql~~Rlla~ 268 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIFSLEMPAEQLMMRMLAS 268 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhC-CCeEEEEeccCCHHHHHHHHHHh
Confidence 467788899999999999999986 56 89999999998766665555544
No 213
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=53.78 E-value=25 Score=31.49 Aligned_cols=47 Identities=13% Similarity=-0.102 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
+.+|++.+.++..|-....-++..|++. |++|+++...-..+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 5789999999999999999999999999 9999988755433333333
No 214
>PRK07773 replicative DNA helicase; Validated
Probab=53.20 E-value=41 Score=37.82 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=38.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
-+++..-|+.|=-.-.+.+|...+.+.|..|.|++-+.....+....+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~ 268 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSA 268 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHH
Confidence 36778889999999999999988643278999999988766655555543
No 215
>PRK09165 replicative DNA helicase; Provisional
Probab=53.15 E-value=59 Score=33.80 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=37.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh---------------cCCceEEEEEcCCCCchhhhhhcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVI---------------QNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~---------------r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
-+++...|+.|=-.-.+.+|...+. . |..|.|++.+.....+....+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~-g~~vl~fSlEMs~~ql~~R~la 281 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVN-GGVVGFFSLEMSAEQLATRILS 281 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccC-CCeEEEEeCcCCHHHHHHHHHH
Confidence 3677888999999999999888864 3 6889999999876665555444
No 216
>PRK06904 replicative DNA helicase; Validated
Probab=53.09 E-value=53 Score=33.85 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=39.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhccC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLVN 56 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~~ 56 (493)
-|++..-|+.|=-.-.+.+|...+ +. |+.|.|++.+.....+....+..
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~-g~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMAS-EKPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHHh
Confidence 467788899999999999999876 46 89999999998766665555544
No 217
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=52.73 E-value=2e+02 Score=26.92 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=28.7
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 5 KPHVALLA--SPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 5 ~~~vl~~~--~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
+.+++.++ -|+.|=-.-...||..|++. |++|.++=..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~-g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQL-GEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 44554444 35668888899999999999 9999988543
No 218
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=51.99 E-value=82 Score=32.28 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=60.3
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 7 HVALLASPG-MGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 7 ~vl~~~~p~-~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
++++....+ -|=-.-...|++.|+++ |++|..+-+... .+......... +. +....+. ..
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~Gpd--~~d~~~~~~~~---g~-----~~~~ld~-----~~--- 65 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKVGPD--YIDPAYHTAAT---GR-----PSRNLDS-----WM--- 65 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeecCCC--cccHHHHHHHh---CC-----CcccCCc-----ee---
Confidence 466654444 48888899999999999 999998865321 01111000000 00 0000000 00
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEECCc------------chhHHHHHHHcCCeEEEEecc
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALIVDLF------------GTEAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~------------~~~a~~~A~~lgIP~v~~~~~ 138 (493)
...+.+.+.+..+..+.|++|++.. ......+|+.++.|++.+...
T Consensus 66 -------~~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~ 123 (451)
T PRK01077 66 -------MGEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDA 123 (451)
T ss_pred -------CCHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECC
Confidence 0123455555555557899997533 122568999999999998754
No 219
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=51.93 E-value=29 Score=31.02 Aligned_cols=50 Identities=10% Similarity=-0.190 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhcc
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
+.+|++.+.++..|-....-++..|.++ |++|+++...-..+.+......
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~vp~e~~v~~~~~ 133 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDVPIDTVVEKVKK 133 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999999999999 9999999877654444444333
No 220
>PRK07004 replicative DNA helicase; Provisional
Probab=51.63 E-value=54 Score=33.70 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=38.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhhhhcc
Q 011099 7 HVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
-+++..-|+.|--.-.+.+|..++ +. |+.|.|++.+.....+..+.+.
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~-~~~v~~fSlEM~~~ql~~R~la 263 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEY-GLPVAVFSMEMPGTQLAMRMLG 263 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHH
Confidence 367788899999999999998876 46 8999999999876665555544
No 221
>PRK04328 hypothetical protein; Provisional
Probab=51.26 E-value=2e+02 Score=26.58 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=34.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQL 51 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~ 51 (493)
--+++...|+.|--.-.+.++..-.++ |+.+.+++.+...+.+.+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRR 68 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHH
Confidence 446778888899988888877776678 999999999876555433
No 222
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=51.01 E-value=45 Score=36.95 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=63.8
Q ss_pred cCCChh---hhcCCCCcccccc---cCCch-HHHHHHHhCCc---eeecccchhcchhhHhhhhhee-eeEEeeccCCCC
Q 011099 355 MWAPQP---EILAHPSVGGFLT---HCGWN-STMESIVNGVP---MIVWPLYAEQKMNATMLTEELR-VAIRSKEVPSEK 423 (493)
Q Consensus 355 ~~~pq~---~lL~~~~~~~~i~---HgG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~e~~G-vg~~~~~~~~~~ 423 (493)
+++|+. .++..++ +|+. .-|+| +..|++++|+| .+++.- --..+. .+| -|+.+
T Consensus 362 ~~v~~~el~aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe---~~G~~~----~l~~~allV------- 425 (797)
T PLN03063 362 CSVDFNYLCALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSE---FAGAGQ----SLGAGALLV------- 425 (797)
T ss_pred CCCCHHHHHHHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeC---CcCchh----hhcCCeEEE-------
Confidence 345543 4566777 5553 44777 66799999999 444432 222222 223 35554
Q ss_pred CccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcch
Q 011099 424 SVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECENSLQ 484 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 484 (493)
+..+.++++++|.++|+.+. ++.+++.+++.+.+.+ -....-.++|++++.+...
T Consensus 426 nP~D~~~lA~AI~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 426 NPWNITEVSSAIKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDIIV 480 (797)
T ss_pred CCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHhh
Confidence 33588999999999998432 1244555555555443 2344667777777766553
No 223
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=50.49 E-value=2e+02 Score=28.55 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCch
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSS 48 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 48 (493)
-+++...|+.|=-.-++.++..+... |..|.+++.++..+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~q 124 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQ 124 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHH
Confidence 35777788999999999999999998 899999998865444
No 224
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.20 E-value=27 Score=28.37 Aligned_cols=45 Identities=7% Similarity=-0.081 Sum_probs=37.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
||++.+.++..|-.-..-++..|+.. |++|.+..+....+.+...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~vp~e~~~~~ 45 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQTPEEIVEA 45 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 58999999999999999999999999 9999999877544443333
No 225
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=49.45 E-value=46 Score=24.61 Aligned_cols=35 Identities=14% Similarity=-0.041 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEE
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFV 41 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~ 41 (493)
.-++++..+...|..-+-.+|+.|.++ |..|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 678999999999999999999999999 89887543
No 226
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=48.92 E-value=1.5e+02 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecch
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
++++.++. +.+.+|+-.+...-...+++.|+|++.-..++
T Consensus 72 ~a~~a~~a---GA~FivsP~~~~~v~~~~~~~~i~~iPG~~Tp 111 (204)
T TIGR01182 72 QLRQAVDA---GAQFIVSPGLTPELAKHAQDHGIPIIPGVATP 111 (204)
T ss_pred HHHHHHHc---CCCEEECCCCCHHHHHHHHHcCCcEECCCCCH
Confidence 44555543 88999888877777788999999977744443
No 227
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=48.85 E-value=43 Score=30.64 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=35.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSE 49 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v 49 (493)
--+++...++.|--.-...++.....+ |..|.|++.++..+.+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSKSY 68 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHH
Confidence 446777888999999999998887778 9999999998654443
No 228
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=48.78 E-value=77 Score=27.09 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCchhhh--hhccCCCCCCCe-EEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHH
Q 011099 22 VLELGKRLVIQNNHHATIFVVANDTSSEQL--SKLVNSPDYDIL-DIVLLPCIDISGIVCTDASLVTQIAVMMHESIPAL 98 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~--~~~~~~~~~~~i-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (493)
++..|++|++..|.+|+.++.......... ..+... +. +...+....... .+ .......+
T Consensus 20 ~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~----G~d~v~~~~~~~~~~-----~~--------~~~~a~~l 82 (164)
T PF01012_consen 20 ALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY----GADKVYHIDDPALAE-----YD--------PEAYADAL 82 (164)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST----TESEEEEEE-GGGTT-----C---------HHHHHHHH
T ss_pred HHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc----CCcEEEEecCccccc-----cC--------HHHHHHHH
Confidence 688999998754778888776531222111 112211 11 222232211111 11 12234456
Q ss_pred HHHHHhcCCCCcEEEECCcchh---HHHHHHHcCCeEEEEec
Q 011099 99 RSTISAMKYRPTALIVDLFGTE---AMAVADEFEMLKYMFIA 137 (493)
Q Consensus 99 ~~ll~~~~~~~DlVI~D~~~~~---a~~~A~~lgIP~v~~~~ 137 (493)
.+++++. +||+|+.-..... +..+|.+||.|++.-..
T Consensus 83 ~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 83 AELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 6667666 8999997764443 45699999999888543
No 229
>PLN02470 acetolactate synthase
Probab=47.76 E-value=64 Score=34.36 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCcccccccCCch------HHHHHHHhCCceeecc
Q 011099 366 PSVGGFLTHCGWN------STMESIVNGVPMIVWP 394 (493)
Q Consensus 366 ~~~~~~i~HgG~g------s~~eal~~GvP~l~~P 394 (493)
...+++++|.|-| .+++|.+.++|||++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 3455888888854 7889999999999995
No 230
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=47.49 E-value=87 Score=26.72 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=24.3
Q ss_pred cCCCccCHHHHHHHHHHHHhcCCceEEEE
Q 011099 12 ASPGMGHLIPVLELGKRLVIQNNHHATIF 40 (493)
Q Consensus 12 ~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~ 40 (493)
+-++.|--.-.+.|++.|+++ |.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHC-CCcEEEE
Confidence 345668888999999999999 9999997
No 231
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=47.33 E-value=43 Score=30.83 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCC---CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhh
Q 011099 269 HESVIYVSFGSGG---TLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIR 345 (493)
Q Consensus 269 ~~~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~ 345 (493)
+++.|.+..|+.. ..+.+.+.++++.|.+.+.+++...+..... ...-+.+...
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~-----------------------~~~~~~~~~~ 160 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE-----------------------KEIADQIAAG 160 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH-----------------------HHHHHHHHTT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH-----------------------HHHHHHHHHh
Confidence 4457777777753 3677889999999988886665443221100 0000111111
Q ss_pred hCCCceeeccCCC---hhhhcCCCCcccccccCCchHHHHHHHhCCceeec
Q 011099 346 TRDVGLVVPMWAP---QPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVW 393 (493)
Q Consensus 346 ~~~~~~~~~~~~p---q~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~ 393 (493)
...+.+.+.+-.+ ...++.+++ +||+.-. |.++=|.+.|+|+|++
T Consensus 161 ~~~~~~~~~~~~~l~e~~ali~~a~--~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 161 LQNPVINLAGKTSLRELAALISRAD--LVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HTTTTEEETTTS-HHHHHHHHHTSS--EEEEESS-HHHHHHHHTT--EEEE
T ss_pred cccceEeecCCCCHHHHHHHHhcCC--EEEecCC-hHHHHHHHHhCCEEEE
Confidence 1111222222222 356888999 9998655 8899999999999998
No 232
>PRK10637 cysG siroheme synthase; Provisional
Probab=46.89 E-value=2.8e+02 Score=28.42 Aligned_cols=92 Identities=5% Similarity=0.035 Sum_probs=49.1
Q ss_pred hhhcCCCCcccccccCCchHHHHHHH-----hCCceeecccchhcchh-----hHhhhhheeeeEEeeccCCCCCccchH
Q 011099 360 PEILAHPSVGGFLTHCGWNSTMESIV-----NGVPMIVWPLYAEQKMN-----ATMLTEELRVAIRSKEVPSEKSVVERG 429 (493)
Q Consensus 360 ~~lL~~~~~~~~i~HgG~gs~~eal~-----~GvP~l~~P~~~DQ~~n-----a~~v~e~~Gvg~~~~~~~~~~~~~~~~ 429 (493)
...|..+. ++|.--+--.+.+.++ .|++.-+ .|++.. -+.+ +.-++-+.+.+-. ....-+.
T Consensus 67 ~~dl~~~~--lv~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~-~~g~l~iaisT~G--~sP~~a~ 137 (457)
T PRK10637 67 ESLLDTCW--LAIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSII-DRSPLMVAVSSGG--TSPVLAR 137 (457)
T ss_pred hHHhCCCE--EEEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEE-ecCCEEEEEECCC--CCcHHHH
Confidence 34456666 7777666666666554 4555433 344433 2222 2333444433111 1233456
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 011099 430 EIEMMVRRIVAEKQGHAIRNRVEELKHSAQKA 461 (493)
Q Consensus 430 ~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a 461 (493)
.|++.|++.+. +...++-+.+.++++.+++.
T Consensus 138 ~lr~~ie~~~~-~~~~~~~~~~~~~R~~~k~~ 168 (457)
T PRK10637 138 LLREKLESLLP-QHLGQVAKYAGQLRGRVKQQ 168 (457)
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHh
Confidence 78888887773 34444666777777776664
No 233
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=46.54 E-value=42 Score=28.80 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=27.4
Q ss_pred ChhhhcCCCCcccccccCCchHHHH---HHHhCCceeeccc
Q 011099 358 PQPEILAHPSVGGFLTHCGWNSTME---SIVNGVPMIVWPL 395 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~HgG~gs~~e---al~~GvP~l~~P~ 395 (493)
+-..++...+...++--||.||..| ++.+++|+++++.
T Consensus 83 ~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 83 ARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred hHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3455555555557777789998654 6889999999985
No 234
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=46.23 E-value=43 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 011099 272 VIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIW 304 (493)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 304 (493)
.+|+|+||........++..+++|.+.+.--++
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~ 35 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVV 35 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 699999998776667788888899888763333
No 235
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=45.95 E-value=1.8e+02 Score=29.36 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+.+.+++. +||++|.... ...+|+++|||++..
T Consensus 347 e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 455667766 8999999854 357899999998753
No 236
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=45.89 E-value=34 Score=37.56 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=66.6
Q ss_pred eccCCChhh---hcCCCCccccccc---CCch-HHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCc
Q 011099 353 VPMWAPQPE---ILAHPSVGGFLTH---CGWN-STMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSV 425 (493)
Q Consensus 353 ~~~~~pq~~---lL~~~~~~~~i~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~ 425 (493)
+.+++++.+ ++..++ +|+.- -|+| ++.|++++|+|-..+|+..+--.-+..+. + |+.++ .
T Consensus 346 ~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~---~-~llv~-------P 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA---E-ALLVN-------P 412 (726)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC---c-CeEEC-------C
Confidence 446777765 555677 44432 3544 77899999876333333332222222221 2 55543 3
Q ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcchh
Q 011099 426 VERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECENSLQF 485 (493)
Q Consensus 426 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 485 (493)
.+.++++++|.++|+.+.. +.+++.+++.+.+++ -+...-++.|++.+...+..
T Consensus 413 ~d~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELREAAEK 466 (726)
T ss_pred CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhh
Confidence 5789999999999986431 244445555444332 34567778888888776543
No 237
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=45.82 E-value=43 Score=32.54 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=30.7
Q ss_pred HHhhHHHHHHHHhcCCCCcEEEECCcchh----------HHHHHHHcCCeEEEEe
Q 011099 92 HESIPALRSTISAMKYRPTALIVDLFGTE----------AMAVADEFEMLKYMFI 136 (493)
Q Consensus 92 ~~~~~~l~~ll~~~~~~~DlVI~D~~~~~----------a~~~A~~lgIP~v~~~ 136 (493)
......+.+.++++ +||++|+-+.+.. +..+.++++||.+.-.
T Consensus 66 eea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 66 EEALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 44555677777877 9999999875543 2236679999988743
No 238
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=45.26 E-value=24 Score=27.11 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHHHH
Q 011099 22 VLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRST 101 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 101 (493)
++.+|+.|.+. |++ +++++.....+...|+ ....+-....... ..+... .+.++
T Consensus 2 ~~~~a~~l~~l-G~~--i~AT~gTa~~L~~~Gi---------~~~~v~~~~~~~~-~~~g~~-------------~i~~~ 55 (95)
T PF02142_consen 2 IVPLAKRLAEL-GFE--IYATEGTAKFLKEHGI---------EVTEVVNKIGEGE-SPDGRV-------------QIMDL 55 (95)
T ss_dssp HHHHHHHHHHT-TSE--EEEEHHHHHHHHHTT-----------EEECCEEHSTG--GGTHCH-------------HHHHH
T ss_pred HHHHHHHHHHC-CCE--EEEChHHHHHHHHcCC---------CceeeeeecccCc-cCCchh-------------HHHHH
Confidence 57899999999 855 4556655555555544 3222211000000 000011 55666
Q ss_pred HHhcCCCCcEEEECCcchh------H---HHHHHHcCCeEE
Q 011099 102 ISAMKYRPTALIVDLFGTE------A---MAVADEFEMLKY 133 (493)
Q Consensus 102 l~~~~~~~DlVI~D~~~~~------a---~~~A~~lgIP~v 133 (493)
+++- +.|+||....-.. + ..+|...+||++
T Consensus 56 i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 56 IKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 6664 9999996643221 1 348889999975
No 239
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.16 E-value=34 Score=28.62 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCch
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSS 48 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 48 (493)
.+++|++.+.+.-||=.-.--++++|+.. |.+|.........+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~~~tp~e 54 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGLFQTPEE 54 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC-CceEEecCCcCCHHH
Confidence 47899999999999999999999999999 999998776554333
No 240
>PTZ00445 p36-lilke protein; Provisional
Probab=45.15 E-value=79 Score=28.54 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=28.4
Q ss_pred HHHHHHHhcC-CCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMK-YRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~-~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
+++.++++.. ..-+++..|- ...-+..|+++|+-.+.+.
T Consensus 166 Hle~ll~~~gl~peE~LFIDD-~~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 166 HLKQVCSDFNVNPDEILFIDD-DMNNCKNALKEGYIALHVT 205 (219)
T ss_pred HHHHHHHHcCCCHHHeEeecC-CHHHHHHHHHCCCEEEEcC
Confidence 3466676662 2446788887 5667889999999988864
No 241
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=45.14 E-value=2.2e+02 Score=25.07 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCceeecccc----hhc---chhhHhhhhheeeeEEeeccCC--------CCCccchHHHHHHHHHHhc
Q 011099 387 GVPMIVWPLY----AEQ---KMNATMLTEELRVAIRSKEVPS--------EKSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 387 GvP~l~~P~~----~DQ---~~na~~v~e~~Gvg~~~~~~~~--------~~~~~~~~~l~~ai~~vl~ 440 (493)
++|++++|-. ... ..|..++ ++.|+=+.... +. +.+-.+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~vi~p~-~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTL-KEDGVQEIEPK-EGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHH-HHCCCEEECCC-CCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 333 4566677 57776655431 10 0223456777777776654
No 242
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=44.46 E-value=1.2e+02 Score=22.89 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 22 VLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
++.+++.|.+. |+++ ++++.........
T Consensus 2 ~~~~~~~l~~l-G~~i--~AT~gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAEL-GFEL--VATGGTAKFLREA 29 (90)
T ss_pred HHHHHHHHHHC-CCEE--EEccHHHHHHHHC
Confidence 46899999999 9988 3444444444443
No 243
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=44.41 E-value=2.2e+02 Score=29.17 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+.+.+++. +||++|... ....+|.++|||++.+
T Consensus 386 e~~~~i~~~--~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 386 ELLKLLLEY--KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHhhc--CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 556677776 899999863 2466788999998875
No 244
>PRK10490 sensor protein KdpD; Provisional
Probab=44.39 E-value=1e+02 Score=34.87 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCch
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSS 48 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 48 (493)
+++|.+=..|+-|--+-|+.-|.+|+++ |++|.+---+.+...
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~-g~dvv~g~~e~h~r~ 66 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQ-GLDVLVGVVETHGRK 66 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhC-CCcEEEEEeeCCCCH
Confidence 6899999999999999999999999999 999998877765433
No 245
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=44.16 E-value=37 Score=30.50 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhcCCCCcEEEECCcchh-------HHHHHHHcCCeEEEEe
Q 011099 94 SIPALRSTISAMKYRPTALIVDLFGTE-------AMAVADEFEMLKYMFI 136 (493)
Q Consensus 94 ~~~~l~~ll~~~~~~~DlVI~D~~~~~-------a~~~A~~lgIP~v~~~ 136 (493)
-.+.+.++++++..++|+|++|..... |..++-.+++|+|.+.
T Consensus 75 E~P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 75 ELPCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp THHHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred hHHHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 345677778887778999999965543 5567888999999975
No 246
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=43.96 E-value=2.4e+02 Score=25.20 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEecch
Q 011099 96 PALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 96 ~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
+++++.++. +.+.+|+-.+...-...|++.|+|++.-..++
T Consensus 71 e~a~~a~~a---GA~FivSP~~~~~v~~~~~~~~i~~iPG~~Tp 111 (196)
T PF01081_consen 71 EQAEAAIAA---GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTP 111 (196)
T ss_dssp HHHHHHHHH---T-SEEEESS--HHHHHHHHHHTSEEEEEESSH
T ss_pred HHHHHHHHc---CCCEEECCCCCHHHHHHHHHcCCcccCCcCCH
Confidence 344555554 89999999888888889999999988866665
No 247
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=43.91 E-value=61 Score=27.83 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=20.5
Q ss_pred cccccccCCc------hHHHHHHHhCCceeecc
Q 011099 368 VGGFLTHCGW------NSTMESIVNGVPMIVWP 394 (493)
Q Consensus 368 ~~~~i~HgG~------gs~~eal~~GvP~l~~P 394 (493)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 3366666664 46788999999999996
No 248
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=43.81 E-value=2.2e+02 Score=27.07 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcc
Q 011099 290 ELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVG 369 (493)
Q Consensus 290 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~ 369 (493)
.+++.++..+..+++..+.. .-+|+.|.+..+.+.+=+ ||+
T Consensus 156 ~~~~~l~~~~~Dlivlagy~--------------------------~il~~~~l~~~~~~iiNi-----------HpS-- 196 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYM--------------------------QVLSPELCRKLAGRAINI-----------HHS-- 196 (286)
T ss_pred HHHHHHHHhCcCEEEEeChh--------------------------hhCCHHHHhhccCCeEEe-----------ccc--
Confidence 45666777777777777443 446676665554432223 666
Q ss_pred cccccCCchHHHHHHHhCCceeecccc--hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHh
Q 011099 370 GFLTHCGWNSTMESIVNGVPMIVWPLY--AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIV 439 (493)
Q Consensus 370 ~~i~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl 439 (493)
+.=.+.|.+.+..|+.+|+...++=++ .+..+-+.-+. +.- +.+. ..-|.++|.+.+.++-
T Consensus 197 LLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~-Q~~--v~I~------~~dt~~~L~~r~~~~E 259 (286)
T PRK13011 197 FLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIE-QDV--ERVD------HAYSPEDLVAKGRDVE 259 (286)
T ss_pred cCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEE-EEE--EEcC------CCCCHHHHHHHHHHHH
Confidence 677778999999999999999888764 23334444332 222 2322 3348899998887753
No 249
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=43.71 E-value=89 Score=28.58 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhh
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSK 53 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~ 53 (493)
-+++...|+.|=-.-.+.++..++...|+.|.|++.+.....+....
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 35677788889999999988877653279999999998665554443
No 250
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=43.39 E-value=56 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.5
Q ss_pred cccccCCch------HHHHHHHhCCceeecc
Q 011099 370 GFLTHCGWN------STMESIVNGVPMIVWP 394 (493)
Q Consensus 370 ~~i~HgG~g------s~~eal~~GvP~l~~P 394 (493)
++++|+|-| .+.||...++|||++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 677777744 6789999999999994
No 251
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=43.18 E-value=3e+02 Score=26.28 Aligned_cols=102 Identities=11% Similarity=0.068 Sum_probs=65.5
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCcc
Q 011099 290 ELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSVG 369 (493)
Q Consensus 290 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~ 369 (493)
++++.++..+..+++..+.. .-+++.|....+.+.+=+ ||+
T Consensus 160 ~~~~~l~~~~~Dlivlagym--------------------------~il~~~~l~~~~~~iiNi-----------HpS-- 200 (289)
T PRK13010 160 QILDLIETSGAELVVLARYM--------------------------QVLSDDLSRKLSGRAINI-----------HHS-- 200 (289)
T ss_pred HHHHHHHHhCCCEEEEehhh--------------------------hhCCHHHHhhccCCceee-----------Ccc--
Confidence 56677777777777777443 346666665554432323 566
Q ss_pred cccccCCchHHHHHHHhCCceeecccc--hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHh
Q 011099 370 GFLTHCGWNSTMESIVNGVPMIVWPLY--AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIV 439 (493)
Q Consensus 370 ~~i~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl 439 (493)
+.=...|.+....|+.+|+...++=++ .+..+.+.-+. +.-+-+. ..-|.++|.+.+.++-
T Consensus 201 lLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~-Q~~v~V~--------~~dt~e~L~~r~~~~E 263 (289)
T PRK13010 201 FLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIE-QDVERVD--------HSYSPEDLVAKGRDVE 263 (289)
T ss_pred cCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceE-EEEEEcC--------CCCCHHHHHHHHHHHH
Confidence 555667999999999999999888764 24445555442 3333332 3347788888887754
No 252
>PRK07206 hypothetical protein; Provisional
Probab=43.16 E-value=1.1e+02 Score=30.76 Aligned_cols=32 Identities=6% Similarity=-0.064 Sum_probs=23.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
+|+++-..+. ...++++++++ |+++.+++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~-G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKR-GIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHc-CCeEEEEEcCC
Confidence 3777764322 35689999999 99998888664
No 253
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=42.96 E-value=85 Score=30.43 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchH
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (493)
+--|+|+..-+.|--.-.-.||..|.+. |+.|.++...-|++-...+.-.-.. -.+..++.-. .+.+..
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRAaAiEQL~~w~e-r~gv~vI~~~---------~G~DpA 207 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRAAAIEQLEVWGE-RLGVPVISGK---------EGADPA 207 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHHHHHHHHHHHHH-HhCCeEEccC---------CCCCcH
Confidence 4556788888999999999999999999 9999999999886553332111000 0133333221 223332
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcc
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVDLFG 118 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~ 118 (493)
. ..++.++....+ ++|+|++|...
T Consensus 208 a-------VafDAi~~Akar---~~DvvliDTAG 231 (340)
T COG0552 208 A-------VAFDAIQAAKAR---GIDVVLIDTAG 231 (340)
T ss_pred H-------HHHHHHHHHHHc---CCCEEEEeCcc
Confidence 1 234444555544 89999999843
No 254
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=42.94 E-value=29 Score=31.31 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCCCCcEEEECCcchh-------HHHHHHHcCCeEEEEe
Q 011099 95 IPALRSTISAMKYRPTALIVDLFGTE-------AMAVADEFEMLKYMFI 136 (493)
Q Consensus 95 ~~~l~~ll~~~~~~~DlVI~D~~~~~-------a~~~A~~lgIP~v~~~ 136 (493)
.+.+.++++++...||+|++|..... |..+...+++|+|.+.
T Consensus 80 ~p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 80 GPPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 34466666666557999999976665 4456677788998875
No 255
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=42.91 E-value=1.8e+02 Score=31.74 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=59.0
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 7 HVALLASPG-MGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 7 ~vl~~~~p~-~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
.|.+.+..+ .|=-.-.+.|++.|+++ |.+|.++=|-... | .+. .....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~-G~~Vg~fKPi~~~-----------p--------------~~~-----~~~~~ 52 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK-GVKVGFFKPIAQP-----------P--------------LTM-----SEVEA 52 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEeCCcccC-----------C--------------CCH-----HHHHH
Confidence 366665554 58888899999999999 9999998654210 0 000 00000
Q ss_pred HHHH-HHHHhhHHHHHHHHhcCCCCcEEEECCcch---------hHHHHHHHcCCeEEEEecc
Q 011099 86 QIAV-MMHESIPALRSTISAMKYRPTALIVDLFGT---------EAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 86 ~~~~-~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~---------~a~~~A~~lgIP~v~~~~~ 138 (493)
.+.. ......+.+.+.++++..++|+||+|.... ....+|+.++.|++.+...
T Consensus 53 ~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~ 115 (684)
T PRK05632 53 LLASGQLDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSG 115 (684)
T ss_pred HHhccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECC
Confidence 0000 000111223333333345899999875432 2356899999999988754
No 256
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=42.90 E-value=2.1e+02 Score=29.64 Aligned_cols=92 Identities=11% Similarity=-0.010 Sum_probs=51.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
.+++++.-+ .-.+.+++.|.+. |-+|..+..........+..-.... ....+. ..
T Consensus 325 k~vaI~~~~-----~~~~~la~~l~El-Gm~v~~~~~~~~~~~~~~~l~~~~~--~~~~v~------------~d----- 379 (475)
T PRK14478 325 KRVLLYTGG-----VKSWSVVKALQEL-GMEVVGTSVKKSTDEDKERIKELMG--PDAHMI------------DD----- 379 (475)
T ss_pred CEEEEEcCC-----chHHHHHHHHHHC-CCEEEEEEEECCCHHHHHHHHHHcC--CCcEEE------------eC-----
Confidence 567665433 3345788888888 9999888766432211111100000 000000 00
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEE
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYM 134 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~ 134 (493)
.....+.+.+++. +||++|... ....+|+++|||++.
T Consensus 380 -------~~~~e~~~~i~~~--~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 380 -------ANPRELYKMLKEA--KADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred -------CCHHHHHHHHhhc--CCCEEEecC---chhhhhhhcCCCEEE
Confidence 0112345556665 899999973 456789999999874
No 257
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=42.84 E-value=1.3e+02 Score=26.78 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=63.3
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCc
Q 011099 289 MELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSV 368 (493)
Q Consensus 289 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 368 (493)
.++++.++..+..++...+.= .-|.+.|.++..++-+=+ ||+
T Consensus 69 ~~l~~~l~~~~~dlvvLAGyM--------------------------rIL~~~fl~~~~grIlNI-----------HPS- 110 (200)
T COG0299 69 RALVEALDEYGPDLVVLAGYM--------------------------RILGPEFLSRFEGRILNI-----------HPS- 110 (200)
T ss_pred HHHHHHHHhcCCCEEEEcchH--------------------------HHcCHHHHHHhhcceEec-----------Ccc-
Confidence 467788888777766554321 235566766665433333 888
Q ss_pred ccccccCCchHHHHHHHhCCceeecccch--hcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHH
Q 011099 369 GGFLTHCGWNSTMESIVNGVPMIVWPLYA--EQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRI 438 (493)
Q Consensus 369 ~~~i~HgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~v 438 (493)
+.=.++|..+..+|+.+|+..-++-+.+ +.-+-+--++ +. .+-+. ..-|.+.|.+.|.+.
T Consensus 111 -LLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~-Q~--~Vpv~------~~Dt~etl~~RV~~~ 172 (200)
T COG0299 111 -LLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA-QA--AVPVL------PGDTAETLEARVLEQ 172 (200)
T ss_pred -cccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE-EE--eeeec------CCCCHHHHHHHHHHH
Confidence 8889999999999999999987766432 2233332221 22 22221 222788888888664
No 258
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=42.81 E-value=47 Score=33.36 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=58.8
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhcCCceEEEE-EcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchH
Q 011099 7 HVALLASP-GMGHLIPVLELGKRLVIQNNHHATIF-VVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 7 ~vl~~~~p-~~GHv~P~l~LA~~L~~r~Gh~Vt~~-~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (493)
+|++.... +.|-..-.+.|.++|++| |++|.=+ +.++|.+-...+...-.+ ..++ +.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~r-g~~VqpfKvGPDYIDP~~H~~atG~~--------------srNL-----D~- 60 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRR-GLKVQPFKVGPDYIDPGYHTAATGRP--------------SRNL-----DS- 60 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhc-CCcccccccCCCccCchhhhHhhCCc--------------cCCC-----ch-
Confidence 35554443 448999999999999999 9999754 344443321111111100 0011 00
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEEC-------C-----cchhHHHHHHHcCCeEEEEecchH
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVD-------L-----FGTEAMAVADEFEMLKYMFIASNA 140 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D-------~-----~~~~a~~~A~~lgIP~v~~~~~~~ 140 (493)
+.+ ..+.+..++.+.....|+.|++ . -...++.+|+.+|+|+|.+.-...
T Consensus 61 ---~mm---~~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~ 122 (451)
T COG1797 61 ---WMM---GEEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASG 122 (451)
T ss_pred ---hhc---CHHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcc
Confidence 011 1134444544444456665543 1 124467899999999998765543
No 259
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=42.48 E-value=2.2e+02 Score=24.77 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=46.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCC-CchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAND-TSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
.|-+++-.+.|-....+.+|-+-.-+ |.+|.++-.-.. ...-+...+...+ ++.+..... ... .. .+...
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~-G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~-~f~---~~-~~~~~ 75 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH-GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGK-GFV---WR-MNEEE 75 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT-T--EEEEESS--SS--HHHHHHGGGT-----EEEE--T-T--------GGGHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC-CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCC-ccc---cc-CCCcH
Confidence 46778888888888776666666666 788888875543 2222333344443 466655543 111 11 11111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
.-............+.+. +..+|+||.|-+..
T Consensus 76 ~~~~~~~~~~~~a~~~i~--~~~~dlvILDEi~~ 107 (172)
T PF02572_consen 76 EDRAAAREGLEEAKEAIS--SGEYDLVILDEINY 107 (172)
T ss_dssp HHHHHHHHHHHHHHHHTT---TT-SEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCEEEEcchHH
Confidence 112222223333333333 45899999998654
No 260
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=42.43 E-value=2e+02 Score=29.24 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 363 e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 567777776 8999999985 467899999999875
No 261
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=42.12 E-value=69 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.0
Q ss_pred cccccccCCch------HHHHHHHhCCceeecc
Q 011099 368 VGGFLTHCGWN------STMESIVNGVPMIVWP 394 (493)
Q Consensus 368 ~~~~i~HgG~g------s~~eal~~GvP~l~~P 394 (493)
.+++++|+|-| .+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33778887754 7889999999999996
No 262
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=41.77 E-value=1.4e+02 Score=27.71 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCC
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAND 45 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~ 45 (493)
+++..-|+.|.-.-..++|..+++. |++|-++.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCCc
Confidence 4555678889999999999999999 999999987753
No 263
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=41.76 E-value=2.8e+02 Score=25.36 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=48.9
Q ss_pred hhcCCCCcccccccCCchHHHHHHHh-----CCceeecccchhcchhh-----HhhhhheeeeEEeeccCCCCCccchHH
Q 011099 361 EILAHPSVGGFLTHCGWNSTMESIVN-----GVPMIVWPLYAEQKMNA-----TMLTEELRVAIRSKEVPSEKSVVERGE 430 (493)
Q Consensus 361 ~lL~~~~~~~~i~HgG~gs~~eal~~-----GvP~l~~P~~~DQ~~na-----~~v~e~~Gvg~~~~~~~~~~~~~~~~~ 430 (493)
.-|..+. ++|.--+--.+.+.++. |++..++ |++..+ +.+ +.-++-+.+.+-. ....-+..
T Consensus 81 ~dl~g~~--LViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv-~rg~l~IaIST~G--~sP~lar~ 151 (223)
T PRK05562 81 EFIKDKH--LIVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQR-STKNFVFALNTKG--GSPKTSVF 151 (223)
T ss_pred HHhCCCc--EEEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEE-ecCCEEEEEECCC--cCcHHHHH
Confidence 3355666 88888887777776544 5555443 443332 223 2323333332111 12334567
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 011099 431 IEMMVRRIVAEKQGHAIRNRVEELKHSAQK 460 (493)
Q Consensus 431 l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 460 (493)
|++.|++++. +...+-+.+.++++.++.
T Consensus 152 lR~~ie~~l~--~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 152 IGEKVKNFLK--KYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 8888888883 334466677777776555
No 264
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.71 E-value=70 Score=27.21 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=31.0
Q ss_pred hHHHHHHHHhc-----CCCCcEEEECCcc----------hhHHHHHHHcCCeEEEEecch
Q 011099 95 IPALRSTISAM-----KYRPTALIVDLFG----------TEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 95 ~~~l~~ll~~~-----~~~~DlVI~D~~~----------~~a~~~A~~lgIP~v~~~~~~ 139 (493)
.-.+++++..+ ++.||+|++..-. --+..+|+++|+|++-.+.+.
T Consensus 106 FLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 106 FLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 33456666665 7899999976422 125679999999987765543
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=41.70 E-value=3e+02 Score=28.20 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchh
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSE 49 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v 49 (493)
-+++...|+.|=-.-++.++..+.++ |.+|.+++.++..+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHH
Confidence 46777888999999999999999988 8999999998765543
No 266
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=41.64 E-value=1.8e+02 Score=26.06 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCC--ceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcch
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNN--HHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASL 83 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~G--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 83 (493)
|+|+++..+.-+-+. +|.+++.+. + ++|.++.+......+...-.+. ++.+..++.......
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~-~~~~~I~~vvs~~~~~~~~~~a~~~-----gIp~~~~~~~~~~~~------- 65 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAG-QLPAEIVAVISDRPDAYGLERAEAA-----GIPTFVLDHKDFPSR------- 65 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcC-CCCcEEEEEEecCccchHHHHHHHc-----CCCEEEECccccCch-------
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEE
Q 011099 84 VTQIAVMMHESIPALRSTISAMKYRPTALIV 114 (493)
Q Consensus 84 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~ 114 (493)
....+.+.+.++++ ++|++|+
T Consensus 66 --------~~~~~~~~~~l~~~--~~D~iv~ 86 (200)
T PRK05647 66 --------EAFDAALVEALDAY--QPDLVVL 86 (200)
T ss_pred --------hHhHHHHHHHHHHh--CcCEEEh
No 267
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=41.51 E-value=91 Score=28.23 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
-+++...|+.|=-.-.+.++....++ |+.|.+++.+...+.+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHH
Confidence 45667778889888888888888788 9999999998765554443
No 268
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.32 E-value=2.4e+02 Score=24.57 Aligned_cols=101 Identities=4% Similarity=0.025 Sum_probs=55.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC-chhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT-SSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVT 85 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (493)
-|.+++..+.|-..-.+.+|-+...+ |++|.++-.-... ..-+...++.. ++.+......-... . .+..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~~~--~--~~~~- 76 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFTWE--T--QNRE- 76 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCeec--C--CCcH-
Confidence 46778889999999999999999999 9999666322111 00011111211 45555544311100 0 1111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 86 QIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 86 ~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
.-............+.+.. ..+|+||.|-+..
T Consensus 77 ~~~~~~~~~~~~a~~~l~~--~~~DlvVLDEi~~ 108 (173)
T TIGR00708 77 ADTAIAKAAWQHAKEMLAD--PELDLVLLDELTY 108 (173)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCCEEEehhhHH
Confidence 1112233344444455543 4899999998654
No 269
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=41.06 E-value=26 Score=32.72 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT 46 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 46 (493)
..-++|+..|+.|=-.=..+||.+|.++ |+.|+|++.+++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~ 145 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLL 145 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHH
Confidence 3468999999999988999999999988 9999999988643
No 270
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=40.85 E-value=1.7e+02 Score=29.59 Aligned_cols=32 Identities=3% Similarity=0.082 Sum_probs=24.3
Q ss_pred HHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 99 RSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 99 ~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+.+++. +||+||.....- .+|+++|||++.+
T Consensus 351 ~~~~~~~--~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 351 FEILEML--KPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHhc--CCCEEEecCccc---hhhhhcCCCEEec
Confidence 3345555 899999887543 5899999999875
No 271
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=40.51 E-value=1.5e+02 Score=30.44 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=61.0
Q ss_pred EEEEcCCC-ccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHH
Q 011099 8 VALLASPG-MGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQ 86 (493)
Q Consensus 8 vl~~~~p~-~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 86 (493)
|++....+ -|--.-...|++.|+++ |++|..+=+... .+......... + .+ ..+. . .+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~g~d--~~D~~~~~~~~---g-----~~---~~~l-d---~~--- 60 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKVGPD--YIDPMFHTQAT---G-----RP---SRNL-D---SF--- 60 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEccCCC--CCCHHHHHHHh---C-----Cc---hhhC-C---cc---
Confidence 45554444 48888899999999999 999999865311 00000000000 0 00 0000 0 00
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEECCc--c----------hhHHHHHHHcCCeEEEEecch
Q 011099 87 IAVMMHESIPALRSTISAMKYRPTALIVDLF--G----------TEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~--~----------~~a~~~A~~lgIP~v~~~~~~ 139 (493)
+ ...+.+.+.+.++..+.|++|++-. . ....++|+.++.|++.+....
T Consensus 61 ~-----~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 61 F-----MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred c-----CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 0 1234455556555557899997743 1 125689999999999987654
No 272
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=39.64 E-value=58 Score=29.49 Aligned_cols=49 Identities=16% Similarity=-0.041 Sum_probs=40.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhc
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKL 54 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~ 54 (493)
+.+|++.+.++..|-....-++-.|..+ |++|+++...-..+.+.....
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~vp~e~~v~~~~ 136 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMVPIEKILEAAK 136 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999999999999 999999987654444444433
No 273
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=39.53 E-value=2e+02 Score=26.32 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQL 51 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~ 51 (493)
--+++...|+.|--.-.+.++..-.++ |..+.|++.+...+.+.+
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRR 66 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHH
Confidence 447788889999998888887776688 999999999876655444
No 274
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=39.52 E-value=56 Score=29.08 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=24.6
Q ss_pred CCCCcEEE-ECC-cchhHHHHHHHcCCeEEEEecch
Q 011099 106 KYRPTALI-VDL-FGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 106 ~~~~DlVI-~D~-~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
...||+|| .|+ ....+..=|.++|||++.+.-+.
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 45899988 443 23345667899999999987554
No 275
>PRK00784 cobyric acid synthase; Provisional
Probab=39.49 E-value=3.4e+02 Score=28.16 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=27.7
Q ss_pred EEEEcCCC-ccCHHHHHHHHHHHHhcCCceEEEEEc
Q 011099 8 VALLASPG-MGHLIPVLELGKRLVIQNNHHATIFVV 42 (493)
Q Consensus 8 vl~~~~p~-~GHv~P~l~LA~~L~~r~Gh~Vt~~~~ 42 (493)
+.+....+ -|=-.-...|++.|+++ |++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 66665544 59999999999999999 999988755
No 276
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=39.36 E-value=1.3e+02 Score=30.68 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
|.+ .|+|+++-.+++-| +|++.|++- ++-..+++.+
T Consensus 1 ~~~-~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~p 36 (426)
T PRK13789 1 MQV-KLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFP 36 (426)
T ss_pred CCC-CcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEEC
Confidence 553 49999999998887 689999988 7655555544
No 277
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.50 E-value=46 Score=33.19 Aligned_cols=102 Identities=14% Similarity=0.231 Sum_probs=65.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHH
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQ 86 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 86 (493)
-|++---|+-|--.=+++++..|+++ | .|.+++.++-..++.-..- .+ ++. . + .
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~QiklRA~-RL----~~~-----~---~-----------~ 148 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQQIKLRAD-RL----GLP-----T---N-----------N 148 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHHHHHHHHH-Hh----CCC-----c---c-----------c
Confidence 46777789999999999999999999 8 9999999976544322211 00 000 0 0 1
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch---h------------------HHHHHHHcCCeEEEEe
Q 011099 87 IAVMMHESIPALRSTISAMKYRPTALIVDLFGT---E------------------AMAVADEFEMLKYMFI 136 (493)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~---~------------------a~~~A~~lgIP~v~~~ 136 (493)
+..+.+...+.+.+.+++. +||++|+|..-. . -..+|+..||+.+.+.
T Consensus 149 l~l~aEt~~e~I~~~l~~~--~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 149 LYLLAETNLEDIIAELEQE--KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred eEEehhcCHHHHHHHHHhc--CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 1112233444556666655 999999995321 1 1247888899977763
No 278
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=38.11 E-value=2.9e+02 Score=24.53 Aligned_cols=102 Identities=9% Similarity=0.010 Sum_probs=55.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC-chhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHH
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT-SSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQ 86 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 86 (493)
|.+++-.+.|-....+.+|-+-.-+ |.+|-++..-.-. ..-+...+...+ ..+.|...+..-.+.. .+....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~----~~~~~d 103 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWET----QDREAD 103 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCC----cCcHHH
Confidence 6677778889888877777666666 7888777533211 111122222221 3577776663222111 111111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 87 IAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
. .......+...+.+.+ .++|+||.|-+.+
T Consensus 104 ~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 104 I-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred H-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 1 3333344444555544 4999999998765
No 279
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.02 E-value=2.9e+02 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=20.9
Q ss_pred CCcEEEECCcchhHHHHHHHcCCeEEEEecc
Q 011099 108 RPTALIVDLFGTEAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 108 ~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~ 138 (493)
+.+.+|+-.+...-...+++.|+|++.-..+
T Consensus 91 GA~FiVsP~~~~~v~~~~~~~~i~~iPG~~T 121 (222)
T PRK07114 91 GANFIVTPLFNPDIAKVCNRRKVPYSPGCGS 121 (222)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEeCCCCC
Confidence 6777777776666666777777776654333
No 280
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=37.58 E-value=1.8e+02 Score=27.55 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCc
Q 011099 289 MELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSV 368 (493)
Q Consensus 289 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 368 (493)
.++++.++..+..+|...+.. .-+++.|.+..+.+-+=+ ||+
T Consensus 150 ~~~~~~l~~~~~Dlivlagym--------------------------~il~~~~l~~~~~~iINi-----------HpS- 191 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAKYM--------------------------QILSPDFVKRYPNKIINI-----------HHS- 191 (280)
T ss_pred HHHHHHHHHhCCCEEEEeCch--------------------------hhCCHHHHhhccCCEEEe-----------cCC-
Confidence 456777888888888877543 446777766555432323 666
Q ss_pred ccccccCCchHHHHHHHhCCceeecccc--hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHH
Q 011099 369 GGFLTHCGWNSTMESIVNGVPMIVWPLY--AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRI 438 (493)
Q Consensus 369 ~~~i~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~v 438 (493)
+.=...|.+.+..|+.+|+...++=++ .+..+-+.-+. +.-+-+. ..-|.++|.+.+.++
T Consensus 192 -LLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~-Q~~v~I~--------~~dt~~~L~~ri~~~ 253 (280)
T TIGR00655 192 -FLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIE-QDVVRVD--------HTDNVEDLIRAGRDI 253 (280)
T ss_pred -cCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEE-EEEEEcC--------CCCCHHHHHHHHHHH
Confidence 666678999999999999999887764 24445554442 3333322 345888888888765
No 281
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=37.22 E-value=75 Score=30.53 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT 46 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 46 (493)
|+|+|+..|.. ....-++|.+. ||+|.-+.+...+
T Consensus 2 mkivF~GTp~f-----a~~~L~~L~~~-~~eivaV~Tqpdk 36 (307)
T COG0223 2 MRIVFFGTPEF-----AVPSLEALIEA-GHEIVAVVTQPDK 36 (307)
T ss_pred cEEEEEcCchh-----hHHHHHHHHhC-CCceEEEEeCCCC
Confidence 67888887743 34556777778 8988777666543
No 282
>PRK14099 glycogen synthase; Provisional
Probab=37.16 E-value=52 Score=34.06 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=43.6
Q ss_pred eeccCCChhh-hc-CCCCcccccc---cCCc-hHHHHHHHhCCceeecccch--hcchhhHhhhhh--eeeeEEeeccCC
Q 011099 352 VVPMWAPQPE-IL-AHPSVGGFLT---HCGW-NSTMESIVNGVPMIVWPLYA--EQKMNATMLTEE--LRVAIRSKEVPS 421 (493)
Q Consensus 352 ~~~~~~pq~~-lL-~~~~~~~~i~---HgG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~e~--~Gvg~~~~~~~~ 421 (493)
.+.+|-.... ++ +.++ +|+. +=|. .+.+||+++|+|.|+.-..+ |.-.......+. .+.|...+
T Consensus 354 ~~~G~~~~l~~~~~a~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~---- 427 (485)
T PRK14099 354 VVIGYDEALAHLIQAGAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS---- 427 (485)
T ss_pred EEeCCCHHHHHHHHhcCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC----
Confidence 3446633222 23 3456 6663 3444 46789999998766654322 322111110011 14576653
Q ss_pred CCCccchHHHHHHHHH---Hhccc
Q 011099 422 EKSVVERGEIEMMVRR---IVAEK 442 (493)
Q Consensus 422 ~~~~~~~~~l~~ai~~---vl~~~ 442 (493)
.-+.++|.++|.+ ++.|+
T Consensus 428 ---~~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 428 ---PVTADALAAALRKTAALFADP 448 (485)
T ss_pred ---CCCHHHHHHHHHHHHHHhcCH
Confidence 2478999999987 45554
No 283
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=37.01 E-value=1.4e+02 Score=31.68 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=21.9
Q ss_pred cccccccCCch------HHHHHHHhCCceeecc
Q 011099 368 VGGFLTHCGWN------STMESIVNGVPMIVWP 394 (493)
Q Consensus 368 ~~~~i~HgG~g------s~~eal~~GvP~l~~P 394 (493)
.+++++|.|-| ++++|...++|+|++-
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34778777744 7899999999999984
No 284
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=36.99 E-value=2.4e+02 Score=26.40 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCC-CCC--CCCCCCCc
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPC-IDI--SGIVCTDA 81 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~-~~~--~~~~~~~~ 81 (493)
..+|.+.-.|+.|--.-.-.|++.|.++ ||+|-+++..+...+--.+. .++.++...+.. +.+ ... +...
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGGAl-----LGDRiRM~~~~~d~~vfIRS~-atRG 101 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFTGGAL-----LGDRIRMQELSRDPGVFIRSM-ATRG 101 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC---S-----S--GGGCHHHHTSTTEEEEEE----S
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCCcc-----cccHHHhcCcCCCCCEEEeec-CcCC
Confidence 3678999999999999999999999999 99999998765322111111 112333322211 000 000 0011
Q ss_pred chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchh--HHHHHHHcCCeEEEEe
Q 011099 82 SLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGTE--AMAVADEFEMLKYMFI 136 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~--a~~~A~~lgIP~v~~~ 136 (493)
.. .-+.......-.+++.. ++|+||++..... -..+++.-..=++++.
T Consensus 102 ~l-----GGls~~t~~~v~ll~aa--G~D~IiiETVGvGQsE~~I~~~aD~~v~v~~ 151 (266)
T PF03308_consen 102 SL-----GGLSRATRDAVRLLDAA--GFDVIIIETVGVGQSEVDIADMADTVVLVLV 151 (266)
T ss_dssp SH-----HHHHHHHHHHHHHHHHT--T-SEEEEEEESSSTHHHHHHTTSSEEEEEEE
T ss_pred CC-----CCccHhHHHHHHHHHHc--CCCEEEEeCCCCCccHHHHHHhcCeEEEEec
Confidence 11 12233444556677776 9999999976654 3457777676666654
No 285
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=36.96 E-value=2.7e+02 Score=31.56 Aligned_cols=35 Identities=9% Similarity=-0.077 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+++++. +||++|.... ...+|+++|||++...
T Consensus 380 el~~~i~~~--~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMREK--MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHhc--CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 455677776 9999998654 4568999999999654
No 286
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=36.94 E-value=71 Score=31.99 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=30.5
Q ss_pred HHhhHHHHHHHHhcCCCCcEEEECCcchh----------HHHHHHHcCCeEEEEe
Q 011099 92 HESIPALRSTISAMKYRPTALIVDLFGTE----------AMAVADEFEMLKYMFI 136 (493)
Q Consensus 92 ~~~~~~l~~ll~~~~~~~DlVI~D~~~~~----------a~~~A~~lgIP~v~~~ 136 (493)
......+.+.++++ +||++|+-+.+.. +..+.+++|||.+.-.
T Consensus 62 eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 62 EEAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44555677777777 9999998865543 1235678999988854
No 287
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=36.92 E-value=1.2e+02 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=21.9
Q ss_pred cccccccCCc------hHHHHHHHhCCceeecc
Q 011099 368 VGGFLTHCGW------NSTMESIVNGVPMIVWP 394 (493)
Q Consensus 368 ~~~~i~HgG~------gs~~eal~~GvP~l~~P 394 (493)
.+++++|.|- +.+.+|.+.++|||++-
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3477878774 47799999999999985
No 288
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=36.91 E-value=71 Score=31.99 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=31.0
Q ss_pred HHHhhHHHHHHHHhcCCCCcEEEECCcchh----------HHHHHHHcCCeEEEEe
Q 011099 91 MHESIPALRSTISAMKYRPTALIVDLFGTE----------AMAVADEFEMLKYMFI 136 (493)
Q Consensus 91 ~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~----------a~~~A~~lgIP~v~~~ 136 (493)
.......+.+.++++ +||++|+-+.+.. +..+.+++|||.+.-.
T Consensus 61 ~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 344556677777777 9999998865543 1235678999988854
No 289
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=36.79 E-value=2.3e+02 Score=29.14 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+.+.+++. +||++|.... ...+|+++|||++.+
T Consensus 386 e~~~~i~~~--~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEKY--KPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHhc--CCCEEEecCC---cchhhhhcCCCEEEc
Confidence 445666666 9999998874 456899999999885
No 290
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.24 E-value=49 Score=28.87 Aligned_cols=43 Identities=5% Similarity=0.030 Sum_probs=28.8
Q ss_pred HHHHHHHHhc-CCCCcEEEECCcchhHHHHHHHcCCeEEEEecchHH
Q 011099 96 PALRSTISAM-KYRPTALIVDLFGTEAMAVADEFEMLKYMFIASNAW 141 (493)
Q Consensus 96 ~~l~~ll~~~-~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~~~~ 141 (493)
..+...++++ ..++|+||.+.. +..+|+++|+|++.+.++.-+
T Consensus 112 ~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 3555666555 458999999984 468899999999998775433
No 291
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=36.22 E-value=3e+02 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+++++.+. +||++|.+.. +..+|+++|||++.+
T Consensus 428 ~l~~~l~~~--~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTE--PVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhc--CCCEEEECch---HHHHHHHcCCCEEEe
Confidence 456666655 9999998874 567899999999875
No 292
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=35.93 E-value=45 Score=30.59 Aligned_cols=37 Identities=5% Similarity=0.076 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhcCCceEEEEEcC
Q 011099 6 PHVALLASPGMGHLIP------------VLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P------------~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
|+|++..-|++=.+.| -.+||++|.++ ||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~-G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAA-GHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhC-CCEEEEEECc
Confidence 3555555554444433 36789999999 9999998744
No 293
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=35.93 E-value=56 Score=21.21 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHH
Q 011099 427 ERGEIEMMVRRIVAEKQGHAIRNRVEELK 455 (493)
Q Consensus 427 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 455 (493)
++++|..||..+..+. +.+++.|+.+.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5789999999988663 23777776643
No 294
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=35.64 E-value=39 Score=29.86 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCC
Q 011099 22 VLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
-..||+++..| |++||+++.+.
T Consensus 32 G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHT-T-EEEEEE-TT
T ss_pred HHHHHHHHHHC-CCEEEEEecCc
Confidence 46899999999 99999999883
No 295
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=35.59 E-value=3.2e+02 Score=24.37 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=32.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
-+.+...|+.|=-.-.+.+|..+..+ |..|.+++++.
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~ 57 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEG 57 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCC
Confidence 35677888999999999999999998 89999998764
No 296
>PRK06849 hypothetical protein; Provisional
Probab=35.39 E-value=75 Score=31.72 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
++++|+++. |.....+.+++.|.++ ||+|.++....
T Consensus 3 ~~~~VLI~G----~~~~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITG----ARAPAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeC----CCcHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 458888885 3334689999999999 99999997764
No 297
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=35.34 E-value=3.3e+02 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
.+++..+..|--.-++.-++....+ |-+|.++++.-
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 3555666779999999999999999 99999999884
No 298
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=34.94 E-value=2.5e+02 Score=29.43 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCcEEE----ECCcchhHHHHHHHcCCeEEEEecch
Q 011099 97 ALRSTISAMKYRPTALI----VDLFGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI----~D~~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
.++..++. ..+|.+| ||-..+..+.+|.+++||.|++.-.+
T Consensus 100 ~iE~~~~a--~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGp 144 (552)
T PRK00911 100 SIETVVNA--HWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGP 144 (552)
T ss_pred HHHHHhhC--CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 34444443 4899888 88888888889999999999987765
No 299
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=34.78 E-value=1.7e+02 Score=29.98 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=34.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCch
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSS 48 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 48 (493)
-+++..-|+.|=-.-++.++..+.++ |+.|.|++.++....
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~q 136 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQ 136 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHH
Confidence 46777888999999999999999999 899999998875444
No 300
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=34.71 E-value=71 Score=29.79 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=64.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCC------CCeEEEEcCCCCCCCCCCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDY------DILDIVLLPCIDISGIVCT 79 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~------~~i~~~~l~~~~~~~~~~~ 79 (493)
.-++++-.|+.|.-.-.++++...+++ |..|.+++.....+.+.+....+.... ..+.+...-....... .
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~~-~- 100 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLV-S- 100 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccccccccc-c-
Confidence 567889999999999999999999999 999999999987666555543322100 0111111111111000 0
Q ss_pred CcchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 80 DASLVTQIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
...............+.+++++. +++.+|.|....
T Consensus 101 ---~~~~~~~~~~~l~~~I~~~~~~~--~~~~~ViDsi~~ 135 (260)
T COG0467 101 ---IVVGDPLDLEELLDRIREIVEKE--GADRVVIDSITE 135 (260)
T ss_pred ---ccccCCccHHHHHHHHHHHHHHh--CCCEEEEeCCch
Confidence 00000112233445667777776 799999998764
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=34.54 E-value=98 Score=26.83 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=36.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhh
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQL 51 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~ 51 (493)
+++...|+.|=-.-.+.++....+. |..|.|++.+...+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHH
Confidence 5778889999999999999999888 999999999876655443
No 302
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=34.35 E-value=54 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=31.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
||++--.|+.|=+.-.+.+.++|.+. |++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchh
Confidence 67777778777777777999999999 99999998875
No 303
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=34.33 E-value=82 Score=30.56 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=29.5
Q ss_pred EcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 11 LASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 11 ~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
++.|+.|-.--.+.||++|++| |..+.+++-..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~r-G~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQAR-GVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhc-CCeeEEEecCc
Confidence 5678999999999999999999 99999998663
No 304
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=34.04 E-value=2.9e+02 Score=28.87 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCcEEE----ECCcchhHHHHHHHcCCeEEEEecch
Q 011099 98 LRSTISAMKYRPTALI----VDLFGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 98 l~~ll~~~~~~~DlVI----~D~~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
++..++. ..+|.+| ||-..+..+.+|.+++||.+++...+
T Consensus 81 iE~~~~~--~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 81 VETMVNA--HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHhc--CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 3334443 4899887 88888888889999999999987765
No 305
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=33.71 E-value=1.1e+02 Score=24.46 Aligned_cols=43 Identities=14% Similarity=-0.158 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhh
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQL 51 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~ 51 (493)
++..+.++..|-.....++..|.++ |++|.++......+.+..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~-G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDN-GFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHC-CCEEEEcCCCCCHHHHHH
Confidence 6777888999999999999999999 999999976544333333
No 306
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=33.56 E-value=2.2e+02 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCc-eEEEEEcC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNH-HATIFVVA 43 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh-~Vt~~~~~ 43 (493)
..+|+++-.++.| -.+|+.|++. |+ +++++-..
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~a-Gvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRA-GIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHc-CCCEEEEEcCC
Confidence 4689999988877 6789999999 98 67766444
No 307
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=33.47 E-value=2.1e+02 Score=29.78 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=36.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQL 51 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~ 51 (493)
-.+++...|+.|--.-...++...... |.+|.+++.+...+.+.+
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~~~~i~~ 318 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEESRAQLIR 318 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHH
Confidence 456777888899999999999998888 999999998876555433
No 308
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=33.26 E-value=58 Score=31.51 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
|+|+|+..+..+ +...++|.++ ||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~-~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELRED-NFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCcEEEEEcC
Confidence 578888766433 6667888888 8998766654
No 309
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.21 E-value=6.9e+02 Score=27.47 Aligned_cols=39 Identities=8% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 5 KPHVALLA--SPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 5 ~~~vl~~~--~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
+.++++++ .|+.|--.-.+.||..|+.. |++|.++-...
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~-G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 44555555 34668889999999999999 99999886554
No 310
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.18 E-value=3.5e+02 Score=25.74 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCc
Q 011099 289 MELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSV 368 (493)
Q Consensus 289 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 368 (493)
.++.+.++..+..+|...+.. .-+|+.|.+..+.+-+ --||+
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~--------------------------~il~~~~l~~~~~~ii-----------NiHpS- 196 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARYM--------------------------QILSPDFVARFPGRII-----------NIHHS- 196 (286)
T ss_pred HHHHHHHHHhCCCEEEEecch--------------------------hhcCHHHHhhccCCce-----------ecCcc-
Confidence 356677777888888877543 4466666655443222 23666
Q ss_pred ccccccCCchHHHHHHHhCCceeecccc--hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHh
Q 011099 369 GGFLTHCGWNSTMESIVNGVPMIVWPLY--AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIV 439 (493)
Q Consensus 369 ~~~i~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl 439 (493)
+.=...|.+.+..|+.+|+...++=++ .+..+.+.-+. +.-+-+. ..-|.++|.+.+.++-
T Consensus 197 -LLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~-Q~~v~i~--------~~dt~~~L~~ri~~~E 259 (286)
T PRK06027 197 -FLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIE-QDVIRVD--------HRDTAEDLVRAGRDVE 259 (286)
T ss_pred -cCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEE-EEEEEcC--------CCCCHHHHHHHHHHHH
Confidence 566667999999999999998887764 34445555442 3333332 3357888888886553
No 311
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=33.17 E-value=2.8e+02 Score=29.11 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHhc-CCCCcEEEECCcchhHHHHHHHcCCeEEEEecc
Q 011099 96 PALRSTISAM-KYRPTALIVDLFGTEAMAVADEFEMLKYMFIAS 138 (493)
Q Consensus 96 ~~l~~ll~~~-~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~~ 138 (493)
......++++ ..++++||+|.. +..+|+++|++.+.+.+.
T Consensus 132 ~e~~~~~~~l~~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 3455556555 569999999984 568899999999998764
No 312
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=32.72 E-value=3e+02 Score=24.26 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.7
Q ss_pred EEcCCCccCHHHHHHHHHHHHhc
Q 011099 10 LLASPGMGHLIPVLELGKRLVIQ 32 (493)
Q Consensus 10 ~~~~p~~GHv~P~l~LA~~L~~r 32 (493)
++..|+-||.-=|+.|-+.|.++
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhh
Confidence 34458889999999999999887
No 313
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=32.65 E-value=3.5e+02 Score=23.91 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCc--eEEEEEcCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNH--HATIFVVAN 44 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh--~Vt~~~~~~ 44 (493)
+||+++..+..+-+ ..|.+.+.+. ++ +|.++.+..
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~-~l~~~I~~vi~~~ 37 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEG-KIPASVVLVISNK 37 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcC-CCCceEEEEEECC
Confidence 46888887655544 4566677766 44 677655553
No 314
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.52 E-value=2.2e+02 Score=28.82 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
+..|+++..=+.|-..-.-.||+.|+.+ |+.|-+++..-|++....+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHH
Confidence 3456777777889999999999999999 9999999999887765444
No 315
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=32.44 E-value=39 Score=31.32 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCceEEEEEcCC
Q 011099 22 VLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
.-.|+++|+++ ||+|++++|..
T Consensus 22 ~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHhc-CCeEEEEEccc
Confidence 56799999999 99999999875
No 316
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=32.40 E-value=47 Score=30.54 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=24.7
Q ss_pred CCCCcEEE-ECCcc-hhHHHHHHHcCCeEEEEecchH
Q 011099 106 KYRPTALI-VDLFG-TEAMAVADEFEMLKYMFIASNA 140 (493)
Q Consensus 106 ~~~~DlVI-~D~~~-~~a~~~A~~lgIP~v~~~~~~~ 140 (493)
..-||+++ .|+.. --|+.=|.++|||+|.+.=+.+
T Consensus 154 ~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred cCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 34599977 66532 2356678999999999876553
No 317
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=32.27 E-value=58 Score=33.46 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCccCHHHH------------HHHHHHHHhcCCceEEEEEcCC
Q 011099 5 KPHVALLASPGMGHLIPV------------LELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~------------l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
.++|++..-|++=.+.|+ .+||+++..+ |++||+++.+-
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 368888888888777775 6899999999 99999999763
No 318
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.24 E-value=1.6e+02 Score=26.23 Aligned_cols=37 Identities=8% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHhhcCC
Q 011099 430 EIEMMVRRIVAE-KQGHAIRNRVEELKHSAQKALINGG 466 (493)
Q Consensus 430 ~l~~ai~~vl~~-~~~~~~r~~a~~l~~~~~~a~~~~g 466 (493)
-....+++.+.| ++-+++++.+++++++.++|-++|-
T Consensus 59 l~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d 96 (201)
T COG1422 59 LYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355667777777 5567799999999999999755433
No 319
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=31.46 E-value=1.6e+02 Score=19.64 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcchh
Q 011099 447 IRNRVEELKHSAQKALINGGSSYNSLSKIAHECENSLQF 485 (493)
Q Consensus 447 ~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 485 (493)
=.+.++++.+.+. .|=|+-.+|..+.+++|+.++.
T Consensus 13 QQ~AvE~Iq~LMa----qGmSsgEAI~~VA~~iRe~~~~ 47 (51)
T PF03701_consen 13 QQQAVERIQELMA----QGMSSGEAIAIVAQEIREEHQG 47 (51)
T ss_pred HHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHHh
Confidence 4555666666633 3667767777788888765543
No 320
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=31.07 E-value=1.2e+02 Score=29.49 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=25.2
Q ss_pred CCCCcEEE-ECC-cchhHHHHHHHcCCeEEEEecchH
Q 011099 106 KYRPTALI-VDL-FGTEAMAVADEFEMLKYMFIASNA 140 (493)
Q Consensus 106 ~~~~DlVI-~D~-~~~~a~~~A~~lgIP~v~~~~~~~ 140 (493)
...||+|| .|. ....|+.=|.++|||+|.+.=+.+
T Consensus 150 ~~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 150 GGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 34799988 554 333466689999999999875543
No 321
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=31.00 E-value=4.4e+02 Score=24.53 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=34.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT 46 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 46 (493)
.-+++...|+.|=-.-.+.++...+.+ |..|.|++.+...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPA 76 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCc
Confidence 446778889999999999999998888 9999999988644
No 322
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.95 E-value=92 Score=30.86 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCceeecccchhcchhhHhhhhheeeeEEeec-cCCCCCccchHHHHHHHHHHh
Q 011099 387 GVPMIVWPLYAEQKMNATMLTEELRVAIRSKE-VPSEKSVVERGEIEMMVRRIV 439 (493)
Q Consensus 387 GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~-~~~~~~~~~~~~l~~ai~~vl 439 (493)
|||+|-+-|-.|-...-.--+++.|-|..-+- +.-+++++++++|.+.|++.-
T Consensus 500 GvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAe 553 (663)
T KOG0100|consen 500 GVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAE 553 (663)
T ss_pred CCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHH
Confidence 89999998877755544333566676653220 111248899999999998764
No 323
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=30.83 E-value=63 Score=28.48 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
|+|.++.- .|++ --.|+++...| ||+||-++-..
T Consensus 1 mKIaiIgA--sG~~--Gs~i~~EA~~R-GHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGA--SGKA--GSRILKEALKR-GHEVTAIVRNA 34 (211)
T ss_pred CeEEEEec--Cchh--HHHHHHHHHhC-CCeeEEEEeCh
Confidence 44655543 3433 23678999999 99999988663
No 324
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=30.78 E-value=4.8e+02 Score=24.90 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAND 45 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~ 45 (493)
...|+++..++.|--.-+..|+..|.++ |+.|.++.....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 3567777788999999999999999999 999999887754
No 325
>PRK14098 glycogen synthase; Provisional
Probab=30.63 E-value=84 Score=32.59 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=30.3
Q ss_pred CCCCCCEEEEEcC--------CCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 1 MEIRKPHVALLAS--------PGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 1 m~~~~~~vl~~~~--------p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
|..+-|+|++++. |+.|++ +-+|.++|+++ ||+|.++.|..
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~-g~~v~v~~P~y 49 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEE-GFEARIMMPKY 49 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHC-CCeEEEEcCCC
Confidence 3444588998873 333444 56789999999 99999999863
No 326
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=30.53 E-value=1.2e+02 Score=26.91 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=30.3
Q ss_pred hHHHHHHHHhcCCCCcEEEECC-cchhHHHHHHHcCCeEEEEecch
Q 011099 95 IPALRSTISAMKYRPTALIVDL-FGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 95 ~~~l~~ll~~~~~~~DlVI~D~-~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
...+.+++++......++|... -.+.|..+|+++|+|.|.+.++.
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3455677777622234677554 45567779999999999987654
No 327
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=30.48 E-value=5.2e+02 Score=25.23 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT 46 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 46 (493)
...|.+...|+.|--.-.-.|+..|.++ |++|.+++.....
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeCCCc
Confidence 4678899999999999999999999999 9999999987643
No 328
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.26 E-value=65 Score=29.00 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
-|++..+|+.|--.-.-.||++|+++ +|+|..++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhccccchh
Confidence 47788899999999999999999999 9999877654
No 329
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=29.97 E-value=2.5e+02 Score=22.19 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHH
Q 011099 18 HLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPA 97 (493)
Q Consensus 18 Hv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (493)
+=.-++.+|+.|.+. |+++ ++++.........| +....+... ..+ ..+.
T Consensus 10 ~K~~~~~~a~~l~~~-G~~i--~AT~gTa~~L~~~G---------i~~~~v~~~------~~~-------------g~~~ 58 (112)
T cd00532 10 VKAMLVDLAPKLSSD-GFPL--FATGGTSRVLADAG---------IPVRAVSKR------HED-------------GEPT 58 (112)
T ss_pred cHHHHHHHHHHHHHC-CCEE--EECcHHHHHHHHcC---------CceEEEEec------CCC-------------CCcH
Confidence 455688999999999 8887 34554444444433 333222211 010 1234
Q ss_pred HHHHHHh-cCCCCcEEEECC--cc--------hhHHHHHHHcCCeEEE
Q 011099 98 LRSTISA-MKYRPTALIVDL--FG--------TEAMAVADEFEMLKYM 134 (493)
Q Consensus 98 l~~ll~~-~~~~~DlVI~D~--~~--------~~a~~~A~~lgIP~v~ 134 (493)
+.+++++ - ++|+||.-. .. +.-..+|-..+||++.
T Consensus 59 i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 59 VDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 5556654 4 899999632 21 1122479999999776
No 330
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=29.63 E-value=39 Score=28.81 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
|.++..|..|+ ++|..|.++ ||+|++.+...
T Consensus 2 I~ViGaG~~G~-----AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGT-----ALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHH-----HHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHH-----HHHHHHHHc-CCEEEEEeccH
Confidence 56666665554 799999999 99999999874
No 331
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=29.46 E-value=2.7e+02 Score=27.16 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCC----CCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHh
Q 011099 269 HESVIYVSFGSG----GTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLI 344 (493)
Q Consensus 269 ~~~~v~vs~GS~----~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 344 (493)
+++.|.+..|+. -..+.+.+.++++.|...+.++++.- .+.. ...-+.+..
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~G-g~~e------------------------~~~~~~i~~ 233 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFG-SAKD------------------------HEAGNEILA 233 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEe-CHHh------------------------HHHHHHHHH
Confidence 456788888773 23667888999988876677766543 2211 111111211
Q ss_pred hhCCC---c-eeeccCC--C-hhhhcCCCCcccccccCCchHHHHHHHhCCceeec
Q 011099 345 RTRDV---G-LVVPMWA--P-QPEILAHPSVGGFLTHCGWNSTMESIVNGVPMIVW 393 (493)
Q Consensus 345 ~~~~~---~-~~~~~~~--p-q~~lL~~~~~~~~i~HgG~gs~~eal~~GvP~l~~ 393 (493)
..... + +.+.+-. . -..++.+++ +||+.- -|-++=|.+.|+|.|++
T Consensus 234 ~~~~~~~~~~~~l~g~~sL~el~ali~~a~--l~I~nD-TGp~HlAaA~g~P~val 286 (348)
T PRK10916 234 ALNTEQQAWCRNLAGETQLEQAVILIAACK--AIVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_pred hcccccccceeeccCCCCHHHHHHHHHhCC--EEEecC-ChHHHHHHHhCCCEEEE
Confidence 11110 1 1122222 2 355888999 999854 47889999999999986
No 332
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=29.37 E-value=71 Score=28.12 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=32.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQ 50 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~ 50 (493)
+||++...++-|=+. ...+.+.|+++ |++|.++.++.-...+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChhHHHHcC
Confidence 357777777666555 89999999999 99999999886444333
No 333
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=29.17 E-value=4.7e+02 Score=24.56 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCcEEEECC------cchhHHHHHHHcCCeEEEEec
Q 011099 96 PALRSTISAMKYRPTALIVDL------FGTEAMAVADEFEMLKYMFIA 137 (493)
Q Consensus 96 ~~l~~ll~~~~~~~DlVI~D~------~~~~a~~~A~~lgIP~v~~~~ 137 (493)
..+.+.+++. ++|+|++-- ...-+..+|+.||+|.+.+..
T Consensus 101 ~~Laa~~~~~--~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 101 KALAAAVKKI--GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHhc--CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 3556667766 999999542 233467899999999988653
No 334
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=29.11 E-value=1.4e+02 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=20.6
Q ss_pred cccccCCc------hHHHHHHHhCCceeeccc
Q 011099 370 GFLTHCGW------NSTMESIVNGVPMIVWPL 395 (493)
Q Consensus 370 ~~i~HgG~------gs~~eal~~GvP~l~~P~ 395 (493)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 77777653 478889999999999853
No 335
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.94 E-value=66 Score=32.61 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+++++. +||++|.... ...+|+++|||+..+.
T Consensus 360 e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 456677766 9999999885 5668999999997754
No 336
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=28.80 E-value=2.9e+02 Score=21.65 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhH
Q 011099 17 GHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIP 96 (493)
Q Consensus 17 GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (493)
++-.-++.+++.|.+. |+++ + +++......... ++....+.... ...+
T Consensus 10 ~~k~~~~~~~~~l~~~-G~~l-~-aT~gT~~~l~~~---------gi~~~~v~~~~--------------------~~~~ 57 (110)
T cd01424 10 RDKPEAVEIAKRLAEL-GFKL-V-ATEGTAKYLQEA---------GIPVEVVNKVS--------------------EGRP 57 (110)
T ss_pred CcHhHHHHHHHHHHHC-CCEE-E-EchHHHHHHHHc---------CCeEEEEeecC--------------------CCch
Confidence 4566788999999999 9988 3 444443333333 33332221110 0223
Q ss_pred HHHHHHHhcCCCCcEEEECCc-------chhHHHHHHHcCCeEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLF-------GTEAMAVADEFEMLKYM 134 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~-------~~~a~~~A~~lgIP~v~ 134 (493)
.+.+.+++- ++|+||...- .+.-...|-.+|||++.
T Consensus 58 ~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 58 NIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 456666654 9999997432 23344589999999875
No 337
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.72 E-value=2.9e+02 Score=29.43 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=22.9
Q ss_pred CcccccccCCch------HHHHHHHhCCceeecc
Q 011099 367 SVGGFLTHCGWN------STMESIVNGVPMIVWP 394 (493)
Q Consensus 367 ~~~~~i~HgG~g------s~~eal~~GvP~l~~P 394 (493)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 344888998844 7788999999999995
No 338
>PRK09620 hypothetical protein; Provisional
Probab=28.55 E-value=82 Score=28.90 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=27.0
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhcCCceEEEEEcC
Q 011099 6 PHVALLASPGMGHLIP------------VLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P------------~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
++|+++.-|+.=.+.| -..||++|.++ |++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 5677776654444333 36799999999 9999999765
No 339
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=28.45 E-value=1.1e+02 Score=27.93 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=31.8
Q ss_pred CCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchh
Q 011099 13 SPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSE 49 (493)
Q Consensus 13 ~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v 49 (493)
=|+.|--.-.+.||.+|+++ |-.|+++=..++....
T Consensus 10 KGGaGKTT~~~~LAs~la~~-G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAAR-GARVALIDADPNQPLA 45 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHC-CCeEEEEeCCCCCcHH
Confidence 46789999999999999999 9999999988876653
No 340
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.35 E-value=87 Score=32.73 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+++++. +||+||.+.. ...+|+++|||++.++
T Consensus 365 ei~~~I~~~--~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV--EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc--CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 445666665 8999999883 4456899999997764
No 341
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=28.12 E-value=1.1e+02 Score=30.42 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.1
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEc
Q 011099 2 EIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVV 42 (493)
Q Consensus 2 ~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~ 42 (493)
..++|+|+++ |+.|.+ -..|++.|.++ ||+|+.+.-
T Consensus 18 ~~~~~~IlVt--GgtGfI--G~~l~~~L~~~-G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICIT--GAGGFI--ASHIARRLKAE-GHYIIASDW 53 (370)
T ss_pred CCCCCEEEEE--CCccHH--HHHHHHHHHhC-CCEEEEEEe
Confidence 3457888877 455543 46789999999 999998874
No 342
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.09 E-value=1.2e+02 Score=25.25 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=39.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhc
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKL 54 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~ 54 (493)
.+|++.+..+-+|-.=---++..|.+. |++|..+......+.+.+.-.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~-GfeVi~LG~~v~~e~~v~aa~ 49 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVVNLGVLSPQEEFIKAAI 49 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999999999 999999987765444444433
No 343
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=27.96 E-value=91 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 011099 270 ESVIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVR 307 (493)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 307 (493)
..+|++++||......+.++++++.+. .+.+++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 348999999987777888999988885 3577777653
No 344
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=27.88 E-value=1.4e+02 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=28.9
Q ss_pred EEEEcCC--CccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 8 VALLASP--GMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 8 vl~~~~p--~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
|++++.+ +-|-..-.-+|+-+|+.+ |+.|.++-..
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~D 40 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFD 40 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecC
Confidence 5555554 668999999999999999 9999998655
No 345
>PLN02939 transferase, transferring glycosyl groups
Probab=27.78 E-value=60 Score=36.32 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCEEEEEcC-----CCccCHHH-HHHHHHHHHhcCCceEEEEEcCC
Q 011099 5 KPHVALLAS-----PGMGHLIP-VLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 5 ~~~vl~~~~-----p~~GHv~P-~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
+|||++++. --.|-+-- .-+|.++|++. ||+|.+++|..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 599999873 22344443 56899999999 99999999974
No 346
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.59 E-value=90 Score=27.16 Aligned_cols=38 Identities=5% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCcEEEECCcchh--HHHHHHHcCCeEEEEe
Q 011099 96 PALRSTISAMKYRPTALIVDLFGTE--AMAVADEFEMLKYMFI 136 (493)
Q Consensus 96 ~~l~~ll~~~~~~~DlVI~D~~~~~--a~~~A~~lgIP~v~~~ 136 (493)
+.++.++. + +||+||....... ...--++.|||++.+.
T Consensus 60 ~n~E~ll~-l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA-L--KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc-c--CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 34555554 3 9999998653332 3345578999988864
No 347
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.47 E-value=95 Score=32.51 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+.+++. +||+||.+.. ...+|+++|||++.+.
T Consensus 353 el~~~i~~~--~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 445566655 8999998873 5568999999988764
No 348
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=27.35 E-value=1.2e+02 Score=28.43 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=34.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEEEcCCCCchhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLV-IQNNHHATIFVVANDTSSEQL 51 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~v~~ 51 (493)
--+++...++.|=-.-.+.++..++ +. |+.|.|++.+.....+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~~~~~~~~ 76 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEEPVVRTAR 76 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEcccCHHHHHH
Confidence 3467777889999999999998875 45 899999999875544433
No 349
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=27.28 E-value=3.1e+02 Score=23.29 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=28.3
Q ss_pred EEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 10 LLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 10 ~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
..+-|+.|--.-...||..|+++ |++|.++-...
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~-g~~vllvD~D~ 38 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKL-GYKVGLLDADI 38 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHc-CCcEEEEeCCC
Confidence 34457789999999999999999 99999986553
No 350
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=27.25 E-value=1.8e+02 Score=27.14 Aligned_cols=104 Identities=13% Similarity=-0.060 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHHH
Q 011099 22 VLELGKRLVIQNN-HHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRS 100 (493)
Q Consensus 22 ~l~LA~~L~~r~G-h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (493)
+-..++.|.+. + .+|-+.++...-+.+.. ... .+..+-+..+|.+..... ....+.+...-..+.+.=..
T Consensus 118 ~~eA~~~l~~~-~~~~iflttGsk~L~~f~~--~~~--~~~r~~~RvLp~~~~~~g----~~~~~iia~~GPfs~e~n~a 188 (249)
T PF02571_consen 118 YEEAAELLKEL-GGGRIFLTTGSKNLPPFVP--APL--PGERLFARVLPTPESALG----FPPKNIIAMQGPFSKELNRA 188 (249)
T ss_pred HHHHHHHHhhc-CCCCEEEeCchhhHHHHhh--ccc--CCCEEEEEECCCccccCC----CChhhEEEEeCCCCHHHHHH
Confidence 44566677666 6 56655555543332222 010 112444556665444211 11111111111113334467
Q ss_pred HHHhcCCCCcEEEECCcc---hhH-HHHHHHcCCeEEEEe
Q 011099 101 TISAMKYRPTALIVDLFG---TEA-MAVADEFEMLKYMFI 136 (493)
Q Consensus 101 ll~~~~~~~DlVI~D~~~---~~a-~~~A~~lgIP~v~~~ 136 (493)
+++++ +.|+||+=... ... ..+|..+|||++++.
T Consensus 189 l~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 189 LFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 78888 99999965332 223 359999999999974
No 351
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.23 E-value=1e+02 Score=31.40 Aligned_cols=35 Identities=6% Similarity=0.140 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+++++. +||++|.+.. ...+|+++|+|++.+.
T Consensus 361 e~~~~i~~~--~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 361 EVGDMIART--EPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHhh--CCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 345555555 8999999883 4456899999998864
No 352
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.20 E-value=58 Score=31.08 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
|+|+++-.|..| ..+|..|.+. ||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCeEEEEECC
Confidence 568888877666 5678889999 9999999863
No 353
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=27.02 E-value=2.3e+02 Score=27.91 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHHHHH
Q 011099 23 LELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRSTI 102 (493)
Q Consensus 23 l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 102 (493)
-.|.+.|.+. ||.|.++++..- + +.|+.... .++....+|.....+. ..+ .......+.++..+
T Consensus 22 y~lSq~li~l-ghkVvvithayg-~---r~girylt--~glkVyylp~~v~~n~----tT~-----ptv~~~~Pllr~i~ 85 (426)
T KOG1111|consen 22 YALSQCLIRL-GHKVVVITHAYG-N---RVGIRYLT--NGLKVYYLPAVVGYNQ----TTF-----PTVFSDFPLLRPIL 85 (426)
T ss_pred HHhhcchhhc-CCeEEEEecccc-C---ccceeeec--CCceEEEEeeeeeecc----cch-----hhhhccCcccchhh
Confidence 4689999999 999999998842 2 34555443 2355544543222211 111 11122355566655
Q ss_pred HhcCCCCcEEEECC-cchh---HHHHHHHcCCeEEEEe
Q 011099 103 SAMKYRPTALIVDL-FGTE---AMAVADEFEMLKYMFI 136 (493)
Q Consensus 103 ~~~~~~~DlVI~D~-~~~~---a~~~A~~lgIP~v~~~ 136 (493)
.+- +..+|.... |... +...|+.+|...+...
T Consensus 86 lrE--~I~ivhghs~fS~lahe~l~hartMGlktVfTd 121 (426)
T KOG1111|consen 86 LRE--RIEIVHGHSPFSYLAHEALMHARTMGLKTVFTD 121 (426)
T ss_pred hhh--ceEEEecCChHHHHHHHHHHHHHhcCceEEEec
Confidence 432 666666443 2222 4568999998877643
No 354
>PLN02929 NADH kinase
Probab=26.92 E-value=1.1e+02 Score=29.38 Aligned_cols=66 Identities=5% Similarity=0.027 Sum_probs=42.5
Q ss_pred CCCcccccccCCchHHHHHHH---hCCceeecccchh------cchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHH
Q 011099 365 HPSVGGFLTHCGWNSTMESIV---NGVPMIVWPLYAE------QKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMV 435 (493)
Q Consensus 365 ~~~~~~~i~HgG~gs~~eal~---~GvP~l~~P~~~D------Q~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai 435 (493)
.++ ++|+-||-||+..|.. .++|++++=..-. ++.+.-. +..-+|-- -.++.+++.++|
T Consensus 64 ~~D--lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL--------~~~~~~~~~~~L 131 (301)
T PLN02929 64 DVD--LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHL--------CAATAEDFEQVL 131 (301)
T ss_pred CCC--EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCcccc--------ccCCHHHHHHHH
Confidence 456 9999999999999855 4688888754311 1222211 11123433 235678999999
Q ss_pred HHHhccc
Q 011099 436 RRIVAEK 442 (493)
Q Consensus 436 ~~vl~~~ 442 (493)
+++++++
T Consensus 132 ~~il~g~ 138 (301)
T PLN02929 132 DDVLFGR 138 (301)
T ss_pred HHHHcCC
Confidence 9999764
No 355
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=26.84 E-value=62 Score=33.27 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=38.8
Q ss_pred ccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccc
Q 011099 373 THCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQ 443 (493)
Q Consensus 373 ~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 443 (493)
-|=| -++.||+++|+|++..= +-.=+.-| +..--|...+ ...-....+++++.++..|++
T Consensus 376 E~FG-iv~IEAMa~glPvvAt~----~GGP~EiV-~~~~tG~l~d-----p~~e~~~~~a~~~~kl~~~p~ 435 (495)
T KOG0853|consen 376 EHFG-IVPIEAMACGLPVVATN----NGGPAEIV-VHGVTGLLID-----PGQEAVAELADALLKLRRDPE 435 (495)
T ss_pred CCcc-ceeHHHHhcCCCEEEec----CCCceEEE-EcCCcceeeC-----CchHHHHHHHHHHHHHhcCHH
Confidence 4555 47899999999999863 33334443 3444465544 111122379999999999987
No 356
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=26.50 E-value=58 Score=26.16 Aligned_cols=29 Identities=7% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCCCCch
Q 011099 19 LIPVLELGKRLVIQNNHHATIFVVANDTSS 48 (493)
Q Consensus 19 v~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 48 (493)
+.|++.|.-.+.-| ||.+|++.|.-|.+.
T Consensus 9 Vk~L~eIll~Filr-GHKT~vyLP~yY~~~ 37 (122)
T PF14626_consen 9 VKALVEILLHFILR-GHKTVVYLPKYYKNY 37 (122)
T ss_pred HHHHHHHHHHHHhc-cCeeEEEChHHHhcc
Confidence 56788888888889 999999999976544
No 357
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.46 E-value=4.5e+02 Score=23.18 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=23.2
Q ss_pred ccCHHH-HHHHHHHHHhcCCceEEEEEcCCCC
Q 011099 16 MGHLIP-VLELGKRLVIQNNHHATIFVVANDT 46 (493)
Q Consensus 16 ~GHv~P-~l~LA~~L~~r~Gh~Vt~~~~~~~~ 46 (493)
+|-+-- .-.|+..|+++ ||+||+.+.....
T Consensus 16 YGGfET~ve~L~~~l~~~-g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSK-GIDVTVYCRSDYY 46 (185)
T ss_pred cCcHHHHHHHHHHHHhcC-CceEEEEEccCCC
Confidence 466655 44689999999 9999999987543
No 358
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.38 E-value=1.3e+02 Score=28.70 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=40.1
Q ss_pred hhcCCCCcccccccCCchHHHHHHHh----CCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHH
Q 011099 361 EILAHPSVGGFLTHCGWNSTMESIVN----GVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVR 436 (493)
Q Consensus 361 ~lL~~~~~~~~i~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~ 436 (493)
++...++ ++|+=||=||+..+.+. ++|++++-. -+ +|-- -.++.+++.++++
T Consensus 60 ~~~~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFL--------t~~~~~~~~~~l~ 115 (292)
T PRK01911 60 ELDGSAD--MVISIGGDGTFLRTATYVGNSNIPILGINT--------GR------LGFL--------ATVSKEEIEETID 115 (292)
T ss_pred hcccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEec--------CC------CCcc--------cccCHHHHHHHHH
Confidence 3334566 99999999999999873 677777632 11 1211 2356788889998
Q ss_pred HHhccc
Q 011099 437 RIVAEK 442 (493)
Q Consensus 437 ~vl~~~ 442 (493)
++++++
T Consensus 116 ~i~~g~ 121 (292)
T PRK01911 116 ELLNGD 121 (292)
T ss_pred HHHcCC
Confidence 888764
No 359
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.29 E-value=1.6e+02 Score=28.28 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=40.3
Q ss_pred hhcCCCCcccccccCCchHHHHHHH----hCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHH
Q 011099 361 EILAHPSVGGFLTHCGWNSTMESIV----NGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVR 436 (493)
Q Consensus 361 ~lL~~~~~~~~i~HgG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~ 436 (493)
++...++ ++|+=||=||+..|.+ .++|++++-. -+ +|-- -.++.+++.++++
T Consensus 64 ~~~~~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFL--------~~~~~~~~~~~l~ 119 (296)
T PRK04539 64 ELGQYCD--LVAVLGGDGTFLSVAREIAPRAVPIIGINQ--------GH------LGFL--------TQIPREYMTDKLL 119 (296)
T ss_pred hcCcCCC--EEEEECCcHHHHHHHHHhcccCCCEEEEec--------CC------CeEe--------eccCHHHHHHHHH
Confidence 3333566 9999999999999975 3678777632 12 2322 2356788999999
Q ss_pred HHhccc
Q 011099 437 RIVAEK 442 (493)
Q Consensus 437 ~vl~~~ 442 (493)
++++++
T Consensus 120 ~i~~g~ 125 (296)
T PRK04539 120 PVLEGK 125 (296)
T ss_pred HHHcCC
Confidence 998764
No 360
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.24 E-value=1.4e+02 Score=28.86 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=39.7
Q ss_pred cCCCCcccccccCCchHHHHHHHh----CCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHH
Q 011099 363 LAHPSVGGFLTHCGWNSTMESIVN----GVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRI 438 (493)
Q Consensus 363 L~~~~~~~~i~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~v 438 (493)
...++ ++|+=||-||+..|.+. ++|++++.. -+ +|-- -.+..+++.++++++
T Consensus 70 ~~~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G~------lGFL--------~~~~~~~~~~~l~~i 125 (306)
T PRK03372 70 ADGCE--LVLVLGGDGTILRAAELARAADVPVLGVNL--------GH------VGFL--------AEAEAEDLDEAVERV 125 (306)
T ss_pred ccCCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEec--------CC------Ccee--------ccCCHHHHHHHHHHH
Confidence 33456 99999999999998764 778887753 11 2322 235678888899888
Q ss_pred hccc
Q 011099 439 VAEK 442 (493)
Q Consensus 439 l~~~ 442 (493)
++++
T Consensus 126 ~~g~ 129 (306)
T PRK03372 126 VDRD 129 (306)
T ss_pred HcCC
Confidence 8764
No 361
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=26.23 E-value=99 Score=32.30 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+.+++. +||+||.+.. ...+|+++|||++.+.
T Consensus 355 ei~~~i~~~--~pdliiG~~~---er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQM---ERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHHHhc--CCCEEEEChH---HHHHHHHcCCCEEEec
Confidence 344455554 8999999883 5567999999988764
No 362
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=25.83 E-value=1.1e+02 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=28.4
Q ss_pred EEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 10 LLASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 10 ~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
++..+..--++|..-++...++. |++|+++.+.
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~-G~EV~VF~Tf 40 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAM-GYEVTVFFTF 40 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeH
Confidence 34457778899999999999999 9999999986
No 363
>PRK04940 hypothetical protein; Provisional
Probab=25.80 E-value=1.4e+02 Score=26.23 Aligned_cols=32 Identities=13% Similarity=-0.068 Sum_probs=25.3
Q ss_pred CCcEEEEC-CcchhHHHHHHHcCCeEEEEecch
Q 011099 108 RPTALIVD-LFGTEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 108 ~~DlVI~D-~~~~~a~~~A~~lgIP~v~~~~~~ 139 (493)
+++++|.. .-.++|.-+|+++|+|.|.+.++.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 46788855 456778889999999999987653
No 364
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=25.73 E-value=1e+02 Score=30.58 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=29.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
|..-..--+|++=-.-.||+.|+++.|++|++.+...
T Consensus 3 IFC~VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDdl 39 (374)
T PF10093_consen 3 IFCRVIDNFGDIGVCWRLARQLAAEHGQQVRLWVDDL 39 (374)
T ss_pred eeEEeccCCcchHHHHHHHHHHHHHhCCeEEEEECCH
Confidence 3444556789999999999999875489999999763
No 365
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=25.55 E-value=1.7e+02 Score=25.66 Aligned_cols=29 Identities=17% Similarity=-0.176 Sum_probs=22.7
Q ss_pred CCcEEEEC--CcchhHHHHHHHcCCeEEEEe
Q 011099 108 RPTALIVD--LFGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 108 ~~DlVI~D--~~~~~a~~~A~~lgIP~v~~~ 136 (493)
++|.|++= .-...|..+|.++|+|++..-
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 79999943 334567889999999999863
No 366
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=25.48 E-value=1.5e+02 Score=26.02 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=25.1
Q ss_pred hhhcCCCCcccccccCCchHHHHHHH---------hCCceeecc
Q 011099 360 PEILAHPSVGGFLTHCGWNSTMESIV---------NGVPMIVWP 394 (493)
Q Consensus 360 ~~lL~~~~~~~~i~HgG~gs~~eal~---------~GvP~l~~P 394 (493)
..+|-..+..+++--||.||.-|.+. +.+|++++=
T Consensus 90 k~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 90 KAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 44555555557777899999988743 489998874
No 367
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=25.48 E-value=4.6e+02 Score=22.97 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=56.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCC-chhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchH
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDT-SSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLV 84 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (493)
=-|-+++-.+.|-....+.+|-+-+-+ |.+|.++-.-... ..-+...+...+ ++.+.......... . .+..
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~-G~rV~iiQFlKg~~~~GE~~~l~~~~---~v~~~~~g~~~~~~--~--~~~~ 93 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQ-GTPVLIVQFLKGGIQQGPDRPIQLGQ---NLDWVRCDLPRCLD--T--PHLD 93 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcC-CCEEEEEEEecCCCcchHHHHHHhCC---CcEEEECCCCCeee--C--CCcC
Confidence 346778888899888877777666666 8888888644322 111222233332 56665544311100 0 1111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEECCcch
Q 011099 85 TQIAVMMHESIPALRSTISAMKYRPTALIVDLFGT 119 (493)
Q Consensus 85 ~~~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~ 119 (493)
..-............+.+.+ ..+|+||.|-...
T Consensus 94 ~~~~~~~~~~~~~a~~~l~~--~~~dlvVLDEi~~ 126 (178)
T PRK07414 94 ESEKKALQELWQYTQAVVDE--GRYSLVVLDELSL 126 (178)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCEEEEehhHH
Confidence 01112333344444555544 4899999998654
No 368
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=25.35 E-value=4.3e+02 Score=25.72 Aligned_cols=38 Identities=8% Similarity=0.175 Sum_probs=30.3
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 6 PHVALLA-SPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 6 ~~vl~~~-~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
+||+|++ =|+-|--.-..++|-.|++. |.+|.++++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCC
Confidence 4666665 45669988899999999999 98888887775
No 369
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.22 E-value=1.1e+02 Score=27.75 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHhcCCCCcEEEECCcc--hhHHHHHHHcCCeEEEEecch
Q 011099 102 ISAMKYRPTALIVDLFG--TEAMAVADEFEMLKYMFIASN 139 (493)
Q Consensus 102 l~~~~~~~DlVI~D~~~--~~a~~~A~~lgIP~v~~~~~~ 139 (493)
+..+ +||+||..... .....-....|+|++.+....
T Consensus 56 i~~l--~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 56 ILAL--KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHT----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHhC--CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 4445 99999987766 455567778899999987654
No 370
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.05 E-value=5.8e+02 Score=28.13 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=29.7
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 6 PHVALLA--SPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 6 ~~vl~~~--~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
.+++.++ -|+.|--.-...||..|+.. |++|.++-...
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~-g~rvLlID~D~ 585 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASG-GKRALLIDADG 585 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 4454444 56779999999999999999 99988886553
No 371
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.74 E-value=1.5e+02 Score=28.36 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=38.3
Q ss_pred CCCcccccccCCchHHHHHHHh----CCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhc
Q 011099 365 HPSVGGFLTHCGWNSTMESIVN----GVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 365 ~~~~~~~i~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~ 440 (493)
.++ ++|+=||-||+.+++.. ++|++.+... + +|-. ..++.+++.++|++++.
T Consensus 62 ~~d--~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------~------lGFl--------~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCD--LVIVVGGDGSLLGAARALARHNVPVLGINRG--------R------LGFL--------TDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCC--EEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------c------cccc--------ccCCHHHHHHHHHHHHc
Confidence 456 99999999999999753 5677766531 1 1211 23567899999999987
Q ss_pred cc
Q 011099 441 EK 442 (493)
Q Consensus 441 ~~ 442 (493)
++
T Consensus 118 g~ 119 (295)
T PRK01231 118 GH 119 (295)
T ss_pred CC
Confidence 54
No 372
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=24.66 E-value=4.6e+02 Score=22.80 Aligned_cols=104 Identities=18% Similarity=0.088 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCC
Q 011099 287 QTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHP 366 (493)
Q Consensus 287 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~ 366 (493)
.-.++.+.++..+..++.+.+.. .-+|+.+.+..+...+-+ |+
T Consensus 67 ~~~~~~~~l~~~~~Dl~v~~~~~--------------------------~il~~~~l~~~~~~~iNi-----------Hp 109 (181)
T PF00551_consen 67 NDEELLELLESLNPDLIVVAGYG--------------------------RILPKEFLSIPPYGIINI-----------HP 109 (181)
T ss_dssp HHHHHHHHHHHTT-SEEEESS-S--------------------------S---HHHHHHSTTSEEEE-----------ES
T ss_pred hhhHHHHHHHhhccceeehhhhH--------------------------HHhhhhhhhcccccEEEE-----------ee
Confidence 34567888888888888777543 456777766554322323 33
Q ss_pred CcccccccCCchHHHHHHHhCCceeecccc--hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHH
Q 011099 367 SVGGFLTHCGWNSTMESIVNGVPMIVWPLY--AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRI 438 (493)
Q Consensus 367 ~~~~~i~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~v 438 (493)
+ +.=..=|+..+..++..|....++=++ .+..+-+.-+. +.-+-+. ..-|.++|.+.+.++
T Consensus 110 s--lLP~yrG~~p~~~ai~~g~~~~G~Tvh~~~~~~D~G~Ii~-q~~~~i~--------~~dt~~~l~~r~~~~ 172 (181)
T PF00551_consen 110 S--LLPKYRGASPIQWAILNGEKETGVTVHFMDEGLDAGPIIA-QKKFPIE--------PDDTAESLYERLAEA 172 (181)
T ss_dssp S--STTTTBSSTHHHHHHHHTSSEEEEEEEEE-SSTTTSEEEE-EEEEE----------TT--HHHHHHHHHHH
T ss_pred c--CCccCCCcchhhhhhcCCcceeeeEEEEecccCcCCCeEE-EEEEEcC--------CCCCHHHHHHHHHHH
Confidence 3 333345899999999999999887764 35555555542 3222222 334666776666543
No 373
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.55 E-value=1.3e+02 Score=28.69 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=39.2
Q ss_pred hhcCCCCcccccccCCchHHHHHHHh----CCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHH
Q 011099 361 EILAHPSVGGFLTHCGWNSTMESIVN----GVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVR 436 (493)
Q Consensus 361 ~lL~~~~~~~~i~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~ 436 (493)
++...++ ++|+=||=||+..+... ++|++.+-. - .+|.- ..++.+++.++++
T Consensus 59 ~~~~~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G----~lGFl----------~~~~~~~~~~~l~ 114 (292)
T PRK03378 59 EIGQQAD--LAIVVGGDGNMLGAARVLARYDIKVIGINR--------G----NLGFL----------TDLDPDNALQQLS 114 (292)
T ss_pred hcCCCCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C----CCCcc----------cccCHHHHHHHHH
Confidence 3334566 99999999999999753 567666532 1 12321 2345788999999
Q ss_pred HHhccc
Q 011099 437 RIVAEK 442 (493)
Q Consensus 437 ~vl~~~ 442 (493)
+++++.
T Consensus 115 ~i~~g~ 120 (292)
T PRK03378 115 DVLEGH 120 (292)
T ss_pred HHHcCC
Confidence 998764
No 374
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=24.49 E-value=1.6e+02 Score=26.11 Aligned_cols=38 Identities=8% Similarity=-0.063 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCcEEEE-CC-cchhHHHHHHHcCCeEEEEe
Q 011099 97 ALRSTISAMKYRPTALIV-DL-FGTEAMAVADEFEMLKYMFI 136 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~-D~-~~~~a~~~A~~lgIP~v~~~ 136 (493)
.+.+.+... ++|+|++ +. -.+.|..+|..+|+|++...
T Consensus 41 ~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 41 EFARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 334444433 8999994 33 34456779999999998875
No 375
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.35 E-value=1.1e+02 Score=30.94 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+.+++++. +||+||.+... ..+|+++|+|++.+
T Consensus 362 el~~~i~~~--~pdliig~~~~---~~~a~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEE--PVDLLIGNSHG---RYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHhhcc--CCCEEEECchh---HHHHHhcCCCEEEe
Confidence 445556655 89999999853 57899999999865
No 376
>PLN02240 UDP-glucose 4-epimerase
Probab=24.24 E-value=1.2e+02 Score=29.46 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=26.7
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEc
Q 011099 1 MEIRKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVV 42 (493)
Q Consensus 1 m~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~ 42 (493)
|+...++|+++ |+.|.+ -..|++.|.++ ||+|+.+..
T Consensus 1 ~~~~~~~vlIt--GatG~i--G~~l~~~L~~~-g~~V~~~~~ 37 (352)
T PLN02240 1 MSLMGRTILVT--GGAGYI--GSHTVLQLLLA-GYKVVVIDN 37 (352)
T ss_pred CCCCCCEEEEE--CCCChH--HHHHHHHHHHC-CCEEEEEeC
Confidence 55555666664 566766 45678999999 999998863
No 377
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=24.12 E-value=2.7e+02 Score=19.88 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcchhhhhhhc
Q 011099 429 GEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECENSLQFTQEKAE 491 (493)
Q Consensus 429 ~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (493)
....+.|...+.+. .-...-+...++.+...+..+...++.+++.+.+++-.|-|+|+
T Consensus 15 ~~e~~~l~~~~~~~-----~~~~~~v~~ai~~~~~~~~~~~~Yi~~Il~~W~~~gi~t~e~~~ 72 (77)
T PF07261_consen 15 PSEIEKLEKWIDDY-----GFSPEVVNEAIEYALENNKRSFNYIEKILNNWKQKGIKTVEDAE 72 (77)
T ss_dssp HHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHCT--SHHHHHHHHHHHHHCT--SCCCCT
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 33455666676542 22344555556666666777889999999999998877766654
No 378
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=24.08 E-value=1.4e+02 Score=30.84 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=54.0
Q ss_pred ccCHHHHHHHHHHHHhcC-------Cc----eEEEEEcC--CCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcc
Q 011099 16 MGHLIPVLELGKRLVIQN-------NH----HATIFVVA--NDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDAS 82 (493)
Q Consensus 16 ~GHv~P~l~LA~~L~~r~-------Gh----~Vt~~~~~--~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 82 (493)
-|.+-=.+.+|++|.+.. |. +|.++|-- +........-++......+..+..+|.....+... .+-
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~-kwi 374 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILR-KWI 374 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE--S--
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhh-hcc
Confidence 377888899999996530 33 35555421 11000111112111111345556666533221101 110
Q ss_pred hHHHHHHHHHHhhHH-HHHHHHhcCCCCcEEEECCc--chhHHHHHHHcCCeEEEEec
Q 011099 83 LVTQIAVMMHESIPA-LRSTISAMKYRPTALIVDLF--GTEAMAVADEFEMLKYMFIA 137 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~-l~~ll~~~~~~~DlVI~D~~--~~~a~~~A~~lgIP~v~~~~ 137 (493)
....++..+....+. ...+.+++..+||+|+..+. ...|..+++++|||.+....
T Consensus 375 srf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 375 SRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp -GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-S
T ss_pred chhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhh
Confidence 011223333333332 23444555568999996642 34477899999999887643
No 379
>PRK13768 GTPase; Provisional
Probab=24.01 E-value=3.4e+02 Score=25.21 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
+++...++.|--.-...++..|+++ |++|.++....
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D~ 40 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLDP 40 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECCC
Confidence 7777888889999999999999999 99999987654
No 380
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.95 E-value=1e+02 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 4 RKPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 4 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
++|+|.|+-.|..| ..+|+.|.+. ||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~-G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASAN-GHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHC-CCEEEEEeCC
Confidence 46899999888766 5789999999 9999988755
No 381
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.94 E-value=1.8e+02 Score=26.47 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=51.6
Q ss_pred CCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhc-cCCC-----CCCCeEEEEcCCCCCCCCCCCCcchHHH
Q 011099 13 SPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKL-VNSP-----DYDILDIVLLPCIDISGIVCTDASLVTQ 86 (493)
Q Consensus 13 ~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~-~~~~-----~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 86 (493)
--+.|--.=...++.-+-.. ||+|++++++.......++.- -.++ ....+.|.++...+.. .
T Consensus 36 d~~tGKSvLsqr~~YG~L~~-g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~-----------~ 103 (235)
T COG2874 36 DNGTGKSVLSQRFAYGFLMN-GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN-----------W 103 (235)
T ss_pred CCCccHHHHHHHHHHHHHhC-CceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc-----------c
Confidence 33556666777888888888 999999999975322111110 0110 0123344443322111 1
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEECCcchhHH
Q 011099 87 IAVMMHESIPALRSTISAMKYRPTALIVDLFGTEAM 122 (493)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~a~ 122 (493)
-....+...+.+-+..+.+ +-|+||.|.+...+.
T Consensus 104 ~~~~~~~~L~~l~~~~k~~--~~dViIIDSls~~~~ 137 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRW--EKDVIIIDSLSAFAT 137 (235)
T ss_pred ChHHHHHHHHHHHhhHHhh--cCCEEEEecccHHhh
Confidence 1112223333444455555 899999999876543
No 382
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.89 E-value=1.2e+02 Score=28.04 Aligned_cols=81 Identities=12% Similarity=0.016 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHHHHHH
Q 011099 22 VLELGKRLVIQNNHHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPALRST 101 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 101 (493)
...|++.|... ++.+++.+...+.... ... +.. ..... ....+.+.++
T Consensus 14 ar~la~~L~~~-~~~~~~ss~t~~g~~l----~~~-----------~~~-~~~~G---------------~l~~e~l~~~ 61 (257)
T COG2099 14 ARALAKKLAAA-PVDIILSSLTGYGAKL----AEQ-----------IGP-VRVGG---------------FLGAEGLAAF 61 (257)
T ss_pred HHHHHHHhhcc-CccEEEEEcccccccc----hhc-----------cCC-eeecC---------------cCCHHHHHHH
Confidence 46899999999 8888887766432210 000 000 00000 1134467788
Q ss_pred HHhcCCCCcEEE--ECCcchh----HHHHHHHcCCeEEEEe
Q 011099 102 ISAMKYRPTALI--VDLFGTE----AMAVADEFEMLKYMFI 136 (493)
Q Consensus 102 l~~~~~~~DlVI--~D~~~~~----a~~~A~~lgIP~v~~~ 136 (493)
+++. +.|+|| +.++..- +..+|+..|||++.|-
T Consensus 62 l~e~--~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 62 LREE--GIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHc--CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 8876 899888 2232221 4569999999999974
No 383
>PRK11617 endonuclease V; Provisional
Probab=23.69 E-value=63 Score=29.44 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcCCCCcEEEECCcchhH-------HHHHHHcCCeEEEEe
Q 011099 95 IPALRSTISAMKYRPTALIVDLFGTEA-------MAVADEFEMLKYMFI 136 (493)
Q Consensus 95 ~~~l~~ll~~~~~~~DlVI~D~~~~~a-------~~~A~~lgIP~v~~~ 136 (493)
.+.+.++++++...||+|++|...... ..+.-.+++|+|.+.
T Consensus 84 ~P~~l~al~~l~~~PdlllvDG~G~~HPR~~GlA~HlGv~~~~PtIGVA 132 (224)
T PRK11617 84 YPALLAAWEQLSQKPDLVFVDGHGIAHPRRLGVASHFGLLVDVPTIGVA 132 (224)
T ss_pred HHHHHHHHHhcCcCCCEEEEcCceeECCCCcceeeEEEeecCCCEEEEE
Confidence 455566677776689999999776652 223445567777764
No 384
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.65 E-value=4.6e+02 Score=22.27 Aligned_cols=139 Identities=13% Similarity=0.159 Sum_probs=67.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCce
Q 011099 272 VIYVSFGSGGTLSSKQTMELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGL 351 (493)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 351 (493)
.|-|-.||. .+....+++...|+..+..+-..+-.. ...|+.+.+
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~sa--------------------------HR~p~~l~~------- 46 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASA--------------------------HRTPERLLE------- 46 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--T--------------------------TTSHHHHHH-------
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEec--------------------------cCCHHHHHH-------
Confidence 344555663 245668889999999997664444211 233443322
Q ss_pred eeccCCChhhhcCCCCcccccccCCch----HHHHHHHhCCceeecccchhcch----hhHhhhhheeeeEEeeccCCCC
Q 011099 352 VVPMWAPQPEILAHPSVGGFLTHCGWN----STMESIVNGVPMIVWPLYAEQKM----NATMLTEELRVAIRSKEVPSEK 423 (493)
Q Consensus 352 ~~~~~~pq~~lL~~~~~~~~i~HgG~g----s~~eal~~GvP~l~~P~~~DQ~~----na~~v~e~~Gvg~~~~~~~~~~ 423 (493)
++... .+..+++||.=.|.. ++..++. -+|.|.+|....+.. ....+.--.|+++..- .. +
T Consensus 47 ----~~~~~---~~~~~~viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv--~i-~ 115 (150)
T PF00731_consen 47 ----FVKEY---EARGADVIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATV--GI-N 115 (150)
T ss_dssp ----HHHHT---TTTTESEEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE---SS-T
T ss_pred ----HHHHh---ccCCCEEEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEE--Ec-c
Confidence 11111 111122677666643 4444444 799999998766432 2223311235655432 11 1
Q ss_pred CccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 011099 424 SVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQK 460 (493)
Q Consensus 424 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 460 (493)
+..++.-++-.|-.+ .|++ ++++.+..++..++
T Consensus 116 ~~~nAA~~A~~ILa~-~d~~---l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 116 NGFNAALLAARILAL-KDPE---LREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHT-T-HH---HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc-CCHH---HHHHHHHHHHHHHc
Confidence 334455555444332 3444 78888887777654
No 385
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.62 E-value=1.8e+02 Score=27.52 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 011099 282 TLSSKQTMELAWGLEQSKQRFIWVVRPPL 310 (493)
Q Consensus 282 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 310 (493)
..+.+..+++.+|+.....+.||..+...
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 34567788999999999999999997653
No 386
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=23.58 E-value=81 Score=32.38 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=27.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAND 45 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~ 45 (493)
|||+++.-|.. -|+-|.+|+++ ||+||++=....
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~-g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADA-GYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhC-CCceEEEeccCc
Confidence 57888876644 48899999999 999999876653
No 387
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=23.57 E-value=5.2e+02 Score=22.85 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCccccccccCCCCCcccccccccCCCchhHHhhhCCCceeeccCCChhhhcCCCCc
Q 011099 289 MELAWGLEQSKQRFIWVVRPPLDHDVFDSYLTAGSGALNTAEGALDYHYLPEGFLIRTRDVGLVVPMWAPQPEILAHPSV 368 (493)
Q Consensus 289 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 368 (493)
.++.+.++.....++++.+.. ..+|+.+....+.+.+=+ |++
T Consensus 69 ~~~~~~l~~~~~D~iv~~~~~--------------------------~il~~~~l~~~~~~~iNi-----------Hps- 110 (190)
T TIGR00639 69 QAIIEELRAHEVDLVVLAGFM--------------------------RILGPTFLSRFAGRILNI-----------HPS- 110 (190)
T ss_pred HHHHHHHHhcCCCEEEEeCcc--------------------------hhCCHHHHhhccCCEEEE-----------eCC-
Confidence 356777777788888777543 445666655443321222 444
Q ss_pred ccccccCCchHHHHHHHhCCceeecccc--hhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHH
Q 011099 369 GGFLTHCGWNSTMESIVNGVPMIVWPLY--AEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRI 438 (493)
Q Consensus 369 ~~~i~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~v 438 (493)
+.=-..|.+.+..|+..|....++=++ .+..+-+.-+. +.-+-+. ..-|.++|.+.+.++
T Consensus 111 -lLP~yrG~~p~~~ai~~g~~~tGvTih~v~~~~D~G~Ii~-q~~~~i~--------~~dt~~~L~~k~~~~ 172 (190)
T TIGR00639 111 -LLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIA-QAKVPIL--------PEDTEETLEQRIHKQ 172 (190)
T ss_pred -cccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCCEEE-EEEEEcC--------CCCCHHHHHHHHHHH
Confidence 444467899999999999998887754 24444444432 2222221 344777777776554
No 388
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=23.33 E-value=3.4e+02 Score=29.90 Aligned_cols=50 Identities=28% Similarity=0.338 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhhhcc
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLSKLV 55 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~~~~ 55 (493)
|++|.|=..|+-|-.+-|+.=|+++.+. |.+|.+-.-+.+...-..+.++
T Consensus 22 klkIf~G~apGVGKTyaML~~a~~~~~~-G~DvviG~vEtHgR~ET~al~e 71 (890)
T COG2205 22 KLKIFLGAAPGVGKTYAMLSEAQRLLAE-GVDVVIGVVETHGRRETAALLE 71 (890)
T ss_pred ceEEEeecCCCccHHHHHHHHHHHHHHc-CCcEEEEEecCCCchHHHHHHc
Confidence 5889999999999999999999999999 9999999877665543444443
No 389
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=23.29 E-value=97 Score=22.02 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCceEEEEEcCC
Q 011099 22 VLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 22 ~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
-+..|..|+++ |++|+++=..+
T Consensus 8 Gl~aA~~L~~~-g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKA-GYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHHC-CCcEEEEecCc
Confidence 36789999999 99999986554
No 390
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=23.24 E-value=2.4e+02 Score=18.93 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Q 011099 427 ERGEIEMMVRRIVAEKQGHAIRNRVEELKHSAQKAL 462 (493)
Q Consensus 427 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~ 462 (493)
|.++|+.+|+++|.+.+.... -.+.+++.+++.+
T Consensus 1 td~~i~~~i~~iL~~~dl~~v--T~k~vr~~Le~~~ 34 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTV--TKKQVREQLEERF 34 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG----HHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhCCHhHh--hHHHHHHHHHHHH
Confidence 457899999999986543222 2455555555543
No 391
>PRK13604 luxD acyl transferase; Provisional
Probab=23.20 E-value=1.6e+02 Score=28.29 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEE
Q 011099 5 KPHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFV 41 (493)
Q Consensus 5 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~ 41 (493)
+..++++..+..++-.-+..+|+.|.++ |..|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~-G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSN-GFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHC-CCEEEEec
Confidence 3467888888888887799999999999 99987754
No 392
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=23.05 E-value=2.8e+02 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
-+.++..|+.|=-.-.+.++...... |..|.|++++.
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 46777888999999999999999999 99999999986
No 393
>PLN02470 acetolactate synthase
Probab=22.93 E-value=5.5e+02 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=22.7
Q ss_pred EcCCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 11 LASPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 11 ~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
+...+-|-.|-+-.|+.+..++ --|.+++..
T Consensus 81 ~~t~GPG~~N~l~gia~A~~~~--~Pvl~I~G~ 111 (585)
T PLN02470 81 IATSGPGATNLVTGLADALLDS--VPLVAITGQ 111 (585)
T ss_pred EECCCccHHHHHHHHHHHHhcC--CcEEEEecC
Confidence 3445668888888999998875 677777654
No 394
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.75 E-value=1.5e+02 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCCCHHHHHHHHHHHHhC--CCcEEEEE
Q 011099 271 SVIYVSFGSGGTLSSKQTMELAWGLEQS--KQRFIWVV 306 (493)
Q Consensus 271 ~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~ 306 (493)
.+++|+|||......+.+..+.+.+++. +..|-|.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4899999997664455677888877532 34666766
No 395
>PRK06270 homoserine dehydrogenase; Provisional
Probab=22.68 E-value=4.4e+02 Score=25.75 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=35.9
Q ss_pred ChhhhcCCCCcccccc------cCC---chHHHHHHHhCCceee---cccchhcchhhHhhhhheeeeEEe
Q 011099 358 PQPEILAHPSVGGFLT------HCG---WNSTMESIVNGVPMIV---WPLYAEQKMNATMLTEELRVAIRS 416 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~------HgG---~gs~~eal~~GvP~l~---~P~~~DQ~~na~~v~e~~Gvg~~~ 416 (493)
+..++|..+++.+||- |+| .--+.+||.+|++.|+ -|+...-....+. +++.|+....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~-A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKEL-AKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHH-HHHcCCEEEE
Confidence 5567776555546655 443 4566899999999999 5875432223322 3566766653
No 396
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=22.66 E-value=71 Score=30.49 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEc
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVV 42 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~ 42 (493)
|+|+++..|+.| ..+|..|++. ||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHC-CCceEEEec
Confidence 578888777666 4678889999 999999986
No 397
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.41 E-value=6.1e+02 Score=26.84 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=25.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
+=+++++ .+-|-.|-+-.|+.+..++ --|.+++...
T Consensus 68 ~gv~~~t-~GpG~~n~l~gia~A~~~~--~Pvl~i~G~~ 103 (572)
T PRK08979 68 VGVVLVT-SGPGATNTITGIATAYMDS--IPMVVLSGQV 103 (572)
T ss_pred CeEEEEC-CCchHhHHHHHHHHHhhcC--CCEEEEecCC
Confidence 3445554 4568888899999999886 6777776543
No 398
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=22.40 E-value=2.8e+02 Score=30.89 Aligned_cols=57 Identities=9% Similarity=0.183 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 011099 426 VERGEIEMMVRRIV------AEKQGHAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECENSL 483 (493)
Q Consensus 426 ~~~~~l~~ai~~vl------~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 483 (493)
.|.+.+.+.+..+. ++.+...-.++.++-++.+++|+++| .+...|++|++++++.-
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~g-AsdeEI~~Lm~eLR~Am 536 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALERG-ASDEEIKQLTDKLRAAM 536 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 35555555555442 34443446677777777888887765 55689999999999876
No 399
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.23 E-value=1.5e+02 Score=26.29 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=26.1
Q ss_pred CCcEEEECCcchhHHHHHHHcCCeEEEEec
Q 011099 108 RPTALIVDLFGTEAMAVADEFEMLKYMFIA 137 (493)
Q Consensus 108 ~~DlVI~D~~~~~a~~~A~~lgIP~v~~~~ 137 (493)
...+||+|.-...+...|++.|||+..+..
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 688999999888899999999999988653
No 400
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.16 E-value=1.4e+02 Score=30.31 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCcEEEECCcchhHHHHHHHcCCeEEEE
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTEAMAVADEFEMLKYMF 135 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~a~~~A~~lgIP~v~~ 135 (493)
.+.+++++. ++|++|.... ...+|+++|||++.+
T Consensus 364 ~l~~~i~~~--~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACAA--GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhhc--CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 445666665 8999998874 467899999999875
No 401
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=22.14 E-value=1.4e+02 Score=30.46 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.1
Q ss_pred cccccccCCch------HHHHHHHhCCceeec
Q 011099 368 VGGFLTHCGWN------STMESIVNGVPMIVW 393 (493)
Q Consensus 368 ~~~~i~HgG~g------s~~eal~~GvP~l~~ 393 (493)
.+++++|+|-| .+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 33777777744 778999999999999
No 402
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.07 E-value=3.7e+02 Score=26.91 Aligned_cols=46 Identities=7% Similarity=0.036 Sum_probs=37.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchhhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSEQLS 52 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v~~~ 52 (493)
--|+|+..-+.|-..-.-.+|..++++ |+.+-+++..-|++-...+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTFRagAfDQ 147 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTFRAGAFDQ 147 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeecccccchHHH
Confidence 445666677889999999999999999 9999999999887654333
No 403
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=21.61 E-value=2.6e+02 Score=24.11 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHhhHHHHHHHHhcCCCCcEEEECCcchh-------------H--HHHHHHcCCeEEEEecc
Q 011099 91 MHESIPALRSTISAMKYRPTALIVDLFGTE-------------A--MAVADEFEMLKYMFIAS 138 (493)
Q Consensus 91 ~~~~~~~l~~ll~~~~~~~DlVI~D~~~~~-------------a--~~~A~~lgIP~v~~~~~ 138 (493)
+....+.+.+++++. +||.++.+..++. + ..++.+.|||..-+.++
T Consensus 46 l~~I~~~l~~~i~~~--~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 46 LKQIYDGLSELIDEY--QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 445557888889887 9999987743332 1 23778889998877544
No 404
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.55 E-value=1.3e+02 Score=21.95 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 20 IPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 20 ~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
.--+.+|..|+++ |.+||++...+
T Consensus 9 ~ig~E~A~~l~~~-g~~vtli~~~~ 32 (80)
T PF00070_consen 9 FIGIELAEALAEL-GKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHHHHh-CcEEEEEeccc
Confidence 3458899999999 99999998775
No 405
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=21.53 E-value=2.5e+02 Score=24.85 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=33.8
Q ss_pred ecccchhcchhhHhhhhheeeeEEeeccCC-------CCCccchHHHH----HHHHHHhcccc
Q 011099 392 VWPLYAEQKMNATMLTEELRVAIRSKEVPS-------EKSVVERGEIE----MMVRRIVAEKQ 443 (493)
Q Consensus 392 ~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~-------~~~~~~~~~l~----~ai~~vl~~~~ 443 (493)
++|...||...-..+-|-..+|+....+-+ --..++.+.++ +.|+++|.|+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~ 84 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAG 84 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch
Confidence 467788888888777677888887533110 00235566665 67888888875
No 406
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.35 E-value=2.5e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhcCCCCcEEEECCcch-----hHHHHHHHcCCeEEEEe
Q 011099 94 SIPALRSTISAMKYRPTALIVDLFGT-----EAMAVADEFEMLKYMFI 136 (493)
Q Consensus 94 ~~~~l~~ll~~~~~~~DlVI~D~~~~-----~a~~~A~~lgIP~v~~~ 136 (493)
..+.=..+++++ +.|+||+-...- .=..+|+.+|||+|.+.
T Consensus 184 s~~~n~all~q~--~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 184 SEEDNKALLEQY--RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred ChHHHHHHHHHh--CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 344446778888 999999654322 22469999999999974
No 407
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=21.32 E-value=3.4e+02 Score=28.60 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred cccccccCCch------HHHHHHHhCCceeecc
Q 011099 368 VGGFLTHCGWN------STMESIVNGVPMIVWP 394 (493)
Q Consensus 368 ~~~~i~HgG~g------s~~eal~~GvP~l~~P 394 (493)
.+++++|.|-| .+++|.+.++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44888888844 7889999999999983
No 408
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=21.26 E-value=1.8e+02 Score=30.87 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=46.7
Q ss_pred ChhhhcCCCCcccccccC-Cch-HHHHHHHhCCceeecccch-----hcchhhHhhhhheeeeEEeeccCCCCCccchHH
Q 011099 358 PQPEILAHPSVGGFLTHC-GWN-STMESIVNGVPMIVWPLYA-----EQKMNATMLTEELRVAIRSKEVPSEKSVVERGE 430 (493)
Q Consensus 358 pq~~lL~~~~~~~~i~Hg-G~g-s~~eal~~GvP~l~~P~~~-----DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~ 430 (493)
++.+++.-++.++|-+== =|| |=+||++.|||.|.-=+.+ .+... .. +..||-+.-. ..-+.++
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~--~~~GV~VvdR------~~~n~~e 532 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DP--EEYGVYVVDR------RDKNYDE 532 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HH--GGGTEEEE-S------SSS-HHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cC--cCCcEEEEeC------CCCCHHH
Confidence 455555555544444311 033 8899999999999866532 22222 22 2456665533 3445666
Q ss_pred HHHHHHHHhcc------cchHHHHHHHHHHHHH
Q 011099 431 IEMMVRRIVAE------KQGHAIRNRVEELKHS 457 (493)
Q Consensus 431 l~~ai~~vl~~------~~~~~~r~~a~~l~~~ 457 (493)
..+.|.+.|.+ .+....|+++++|++.
T Consensus 533 ~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 533 SVNQLADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 66666666532 1234577777777765
No 409
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.26 E-value=3.1e+02 Score=23.56 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=38.9
Q ss_pred cchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 011099 399 QKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVAEKQGHAIRNRVEELKHS 457 (493)
Q Consensus 399 Q~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~ 457 (493)
+..|+++. +..|.=-.+- . +..|.++|.++.++=|.|....+++....++.+.
T Consensus 110 ~~LN~aY~-~rFgfPfI~a-V----kg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rI 162 (176)
T COG3195 110 TELNAAYV-ERFGFPFIIA-V----KGNTKDTILAAFERRLDNDREQEFATALAEIERI 162 (176)
T ss_pred HHHHHHHH-HhcCCceEEe-e----cCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 46899998 7999766554 2 4568999999999999987755566665555544
No 410
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.05 E-value=79 Score=29.74 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCCcccccccCCchHHHHHHH------hCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHH
Q 011099 365 HPSVGGFLTHCGWNSTMESIV------NGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRI 438 (493)
Q Consensus 365 ~~~~~~~i~HgG~gs~~eal~------~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~v 438 (493)
.++ ++|+-||-||+..|++ .++|++++-. -+ +| -- ..++.+++.+++.++
T Consensus 35 ~~D--lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G~----lG--FL--------~~~~~~~~~~~l~~i 90 (265)
T PRK04885 35 NPD--IVISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------GH----LG--FY--------TDWRPFEVDKLVIAL 90 (265)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------CC----ce--ec--------ccCCHHHHHHHHHHH
Confidence 355 9999999999999986 4788887742 11 12 11 224567777788777
Q ss_pred hccc
Q 011099 439 VAEK 442 (493)
Q Consensus 439 l~~~ 442 (493)
++++
T Consensus 91 ~~g~ 94 (265)
T PRK04885 91 AKDP 94 (265)
T ss_pred HcCC
Confidence 7653
No 411
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=20.91 E-value=85 Score=26.01 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 19 LIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 19 v~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
+.-.+-++..|+++ ||+|++++++.
T Consensus 13 ~p~alYl~~~Lk~~-G~~v~Va~npA 37 (139)
T PF09001_consen 13 TPSALYLSYKLKKK-GFEVVVAGNPA 37 (139)
T ss_dssp HHHHHHHHHHHHCT-TEEEEEEE-HH
T ss_pred hHHHHHHHHHHHhc-CCeEEEecCHH
Confidence 34478899999999 99999999884
No 412
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.77 E-value=1.7e+02 Score=21.82 Aligned_cols=35 Identities=9% Similarity=-0.158 Sum_probs=27.4
Q ss_pred CEEEEEcCCCc--cCHHHHHHHHHHHHhcCCceEEEEE
Q 011099 6 PHVALLASPGM--GHLIPVLELGKRLVIQNNHHATIFV 41 (493)
Q Consensus 6 ~~vl~~~~p~~--GHv~P~l~LA~~L~~r~Gh~Vt~~~ 41 (493)
-.|+++|.... .+..-...++..|++. |..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~-g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAA-GVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHC-CCEEEEEC
Confidence 46888886643 4667789999999999 99998743
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=20.76 E-value=4.6e+02 Score=26.74 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSE 49 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v 49 (493)
.-|+|+..++.|--.-...||..|+.+.|+.|.+++...++...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 45677778888999999999999987537999999998877654
No 414
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.71 E-value=1.5e+02 Score=27.45 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCcEEEECCcchh--HHH-HHHHcCCeEEEEec
Q 011099 97 ALRSTISAMKYRPTALIVDLFGTE--AMA-VADEFEMLKYMFIA 137 (493)
Q Consensus 97 ~l~~ll~~~~~~~DlVI~D~~~~~--a~~-~A~~lgIP~v~~~~ 137 (493)
.++.++. + +||+||....... ... +-+.+|+|++.+..
T Consensus 66 n~E~i~~-l--~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 66 NYEKIAA-L--KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CHHHHHh-c--CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4455553 3 9999998754433 122 44559999888764
No 415
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.66 E-value=7.9e+02 Score=24.38 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.5
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhcCCceEEEEEcC
Q 011099 6 PHVALLA-SPGMGHLIPVLELGKRLVIQNNHHATIFVVA 43 (493)
Q Consensus 6 ~~vl~~~-~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 43 (493)
++|+++. .|..|. .+|+.|+++ ||+|+++...
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~-G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLS-GYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHC-CCeEEEeCCC
Confidence 6788887 777775 689999999 9999998854
No 416
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.59 E-value=5.6e+02 Score=22.12 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCcEEEECCcchh---HHHHHHHcCCeEEEEe
Q 011099 96 PALRSTISAMKYRPTALIVDLFGTE---AMAVADEFEMLKYMFI 136 (493)
Q Consensus 96 ~~l~~ll~~~~~~~DlVI~D~~~~~---a~~~A~~lgIP~v~~~ 136 (493)
+.+.+++++. +||+|++-..... +..+|.+||.|++.-.
T Consensus 81 ~~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 81 KALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred HHHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 3455566655 7999997654443 5679999999988744
No 417
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=20.58 E-value=1.8e+02 Score=31.06 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=21.4
Q ss_pred ccccccCC------chHHHHHHHhCCceeecc
Q 011099 369 GGFLTHCG------WNSTMESIVNGVPMIVWP 394 (493)
Q Consensus 369 ~~~i~HgG------~gs~~eal~~GvP~l~~P 394 (493)
+++++|.| .+.+.+|.+.++|+|++-
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 37777776 458899999999999984
No 418
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=20.54 E-value=7.4e+02 Score=23.56 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCceEEEEEcCC
Q 011099 23 LELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 23 l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
-+|..+|.+. ||+||+++-..
T Consensus 12 ~~L~~~L~~~-gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKG-GHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhC-CCeEEEEEcCC
Confidence 4678888888 99999999654
No 419
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=20.54 E-value=1.1e+02 Score=26.89 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=28.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCc
Q 011099 8 VALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTS 47 (493)
Q Consensus 8 vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 47 (493)
|++-..|+-|-+.- ..|.+.|+++ |++|.++.++.-..
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~-g~~V~vv~T~~A~~ 39 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEA-GVEVHLVISDWAKE 39 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHC-CCEEEEEECccHHH
Confidence 45555555555554 8899999999 99999999986433
No 420
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=20.54 E-value=2.3e+02 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHhCC
Q 011099 269 HESVIYVSFGSGGTLSSKQTMELAWGLEQSK 299 (493)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~ 299 (493)
.+..+|+++||......+.++..++.|....
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 3347999999976545555666667776643
No 421
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.47 E-value=6.2e+02 Score=25.34 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=35.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh----cCCceEEEEEcCCCCchhhh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVI----QNNHHATIFVVANDTSSEQL 51 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~----r~Gh~Vt~~~~~~~~~~v~~ 51 (493)
..|+|+...+.|--.-...||..+.. + |+.|.+++...++.....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-g~~V~lit~Dt~R~aa~e 223 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-SLNIKIITIDNYRIGAKK 223 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-CCeEEEEeccCccHHHHH
Confidence 45677777788999999999998873 5 799999999987654333
No 422
>PLN02742 Probable galacturonosyltransferase
Probab=20.44 E-value=82 Score=32.59 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=61.2
Q ss_pred cccccCCchHHHHHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHH---Hh----ccc
Q 011099 370 GFLTHCGWNSTMESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRR---IV----AEK 442 (493)
Q Consensus 370 ~~i~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~---vl----~~~ 442 (493)
-.+.|.|.|.+-|.+... -.+=...||-..|+- +..++..-. ...++ .+|...|++ +| .+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~---~~~~~l~dql~~Ak~---y~~ia~~~~-----~~~l~-~el~~~i~e~~~~l~~a~~d~ 123 (534)
T PLN02742 56 EEVNHEGLNFTEEMLSAT---SFSRQLADQITLAKA---YVVIAKEHN-----NLQLA-WELSAQIRNCQLLLSKAATRG 123 (534)
T ss_pred cccccccccchhhhcChH---HHHHHHHHHHHHHHH---HHHHhccCC-----cHHHH-HHHHHHHHHHHHHHHHhhccc
Confidence 677899999999987532 123345799999963 556665532 12232 334444432 33 322
Q ss_pred ch---HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcchhhhhhhc
Q 011099 443 QG---HAIRNRVEELKHSAQKALINGGSSYNSLSKIAHECENSLQFTQEKAE 491 (493)
Q Consensus 443 ~~---~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (493)
+. ....++.+.+.+.+.+|-+ ..-....++..+++-.+.++|++.
T Consensus 124 ~~~~~~~~~~~~~~m~~~i~~ak~----~~~d~~~~~~klr~~l~~~e~~~~ 171 (534)
T PLN02742 124 EPITVEEAEPIIRDLAALIYQAQD----LHYDSATTIMTLKAHIQALEERAN 171 (534)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHH
Confidence 21 3366777777777766522 123455666677766667776654
No 423
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=20.42 E-value=1.8e+02 Score=30.14 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=38.2
Q ss_pred CCCCcccccccCCchHHHHHHHh----CCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHh
Q 011099 364 AHPSVGGFLTHCGWNSTMESIVN----GVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIV 439 (493)
Q Consensus 364 ~~~~~~~~i~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl 439 (493)
..++ ++|+=||-||+..|... ++|++.+ |.- .+|. . -.++.+++.++|.+++
T Consensus 261 ~~~D--lVIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G----~LGF--L--------t~i~~~e~~~~Le~il 316 (508)
T PLN02935 261 TKVD--LVITLGGDGTVLWAASMFKGPVPPVVPF--------SMG----SLGF--M--------TPFHSEQYRDCLDAIL 316 (508)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhccCCCcEEEE--------eCC----Ccce--e--------cccCHHHHHHHHHHHH
Confidence 3456 99999999999999774 4566554 221 2232 2 2357788999999998
Q ss_pred ccc
Q 011099 440 AEK 442 (493)
Q Consensus 440 ~~~ 442 (493)
.++
T Consensus 317 ~G~ 319 (508)
T PLN02935 317 KGP 319 (508)
T ss_pred cCC
Confidence 764
No 424
>PRK05920 aromatic acid decarboxylase; Validated
Probab=20.16 E-value=1.5e+02 Score=26.64 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=32.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCCCCchh
Q 011099 6 PHVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVANDTSSE 49 (493)
Q Consensus 6 ~~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~v 49 (493)
+||++-..|+-+= +=.+.+.+.|.+. ||+|+++.++.-...+
T Consensus 4 krIllgITGsiaa-~ka~~lvr~L~~~-g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAITGASGA-IYGVRLLECLLAA-DYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEEeCHHHH-HHHHHHHHHHHHC-CCEEEEEEChhHHHHH
Confidence 5677776665544 6889999999999 9999999988644433
No 425
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=20.13 E-value=2.3e+02 Score=22.63 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEEcCC
Q 011099 7 HVALLASPGMGHLIPVLELGKRLVIQNNHHATIFVVAN 44 (493)
Q Consensus 7 ~vl~~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 44 (493)
||++..-++.|=-.....|++.|+++ |.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 48888999999999999999999999 99999888765
No 426
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=20.10 E-value=4.7e+02 Score=24.13 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCC-ceEEEEEcCCCCchhhhhhccCCCCCCCeEEEEcCCCCCCCCCCCCcchHHHHHHHHHHhhHH
Q 011099 19 LIPVLELGKRLVIQNN-HHATIFVVANDTSSEQLSKLVNSPDYDILDIVLLPCIDISGIVCTDASLVTQIAVMMHESIPA 97 (493)
Q Consensus 19 v~P~l~LA~~L~~r~G-h~Vt~~~~~~~~~~v~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (493)
++|..++.++|++. | .+|.++||.. +.+......+.. ..||+............ ... .+...+.
T Consensus 105 tt~~~A~~~AL~al-g~~RIalvTPY~--~~v~~~~~~~l~-~~G~eV~~~~~~~~~~~----~~i-------a~i~p~~ 169 (239)
T TIGR02990 105 VTPSSAAVDGLAAL-GVRRISLLTPYT--PETSRPMAQYFA-VRGFEIVNFTCLGLTDD----REM-------ARISPDC 169 (239)
T ss_pred eCHHHHHHHHHHHc-CCCEEEEECCCc--HHHHHHHHHHHH-hCCcEEeeeeccCCCCC----cee-------eecCHHH
Confidence 46778888888887 5 4788877743 333333333221 12566554432111111 111 0112223
Q ss_pred HHHHHHhc-CCCCcEEEECCcchhHHH----HHHHcCCeEEEEe
Q 011099 98 LRSTISAM-KYRPTALIVDLFGTEAMA----VADEFEMLKYMFI 136 (493)
Q Consensus 98 l~~ll~~~-~~~~DlVI~D~~~~~a~~----~A~~lgIP~v~~~ 136 (493)
+.+.+.+. ...+|.|+.......+.. +=+.+|+|++...
T Consensus 170 i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSN 213 (239)
T TIGR02990 170 IVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSN 213 (239)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHH
Confidence 34444433 347899886544443333 4567799976643
No 427
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=20.04 E-value=7.4e+02 Score=26.31 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=35.5
Q ss_pred cccccCCchHHH-HHHHhCCceeecccchhcchhhHhhhhheeeeEEeeccCCCCCccchHHHHHHHHHHhc
Q 011099 370 GFLTHCGWNSTM-ESIVNGVPMIVWPLYAEQKMNATMLTEELRVAIRSKEVPSEKSVVERGEIEMMVRRIVA 440 (493)
Q Consensus 370 ~~i~HgG~gs~~-eal~~GvP~l~~P~~~DQ~~na~~v~e~~Gvg~~~~~~~~~~~~~~~~~l~~ai~~vl~ 440 (493)
+++..+|+|.+. +....|.+-..+ ....++.++.. +.+|+--. ..-+.++|.+++++.++
T Consensus 458 vV~NN~~~g~i~~~q~~~~~~~~~~--~~~~~df~~lA-~a~G~~~~--------~v~~~~el~~al~~a~~ 518 (578)
T PRK06546 458 VVFNNSTLGMVKLEMLVDGLPDFGT--DHPPVDYAAIA-AALGIHAV--------RVEDPKDVRGALREAFA 518 (578)
T ss_pred EEEECCccccHHHHHHhcCCCcccc--cCCCCCHHHHH-HHCCCeeE--------EeCCHHHHHHHHHHHHh
Confidence 788899998764 222233332111 12345666654 67776322 22378999999999863
No 428
>PRK05114 hypothetical protein; Provisional
Probab=20.02 E-value=3.1e+02 Score=18.92 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcchh
Q 011099 447 IRNRVEELKHSAQKALINGGSSYNSLSKIAHECENSLQF 485 (493)
Q Consensus 447 ~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 485 (493)
=.+.++++.+. +.+|=|+-.+|.-+.+++|+.++.
T Consensus 13 QQ~AVErIq~L----MaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 13 QQKAVERIQEL----MAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred HHHHHHHHHHH----HHccccHHHHHHHHHHHHHHHHhc
Confidence 45555666665 334666667777777777776543
Done!