BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011100
(493 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359494643|ref|XP_002263207.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Vitis
vinifera]
gi|297736137|emb|CBI24175.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/487 (80%), Positives = 430/487 (88%), Gaps = 21/487 (4%)
Query: 1 MDEQILLDRNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDST- 59
MDE+ L+D NFPLF+K KP P+P SKN+ TT NP+P T +T
Sbjct: 1 MDEETLVDENFPLFSK------RKPTPKP-----SKNSTTTA----QNPNPEQPLTRTTN 45
Query: 60 -----VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
TFA LGLAEWAVQ CKELGMRRPTPVQ HCIP+IL G DVLGLAQTGSGKTAAF
Sbjct: 46 PTSPSSTFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAF 105
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPILHRLAEDP+GV ALV+TPTRELAYQLAEQF+ALGS LHLRC VVVGGMD++ QA++
Sbjct: 106 ALPILHRLAEDPFGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQT 165
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
LM RPHVVIATPGR+KVLLE++PDIP VF+RTKFLVLDEADRVLDVGFEEELRVVFQCLP
Sbjct: 166 LMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLP 225
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
KNRQTLLFSATMTSDLQTLLELS+NKAYFYEAYEGFKTVE+LKQQYIF+PKNVKDVYL+H
Sbjct: 226 KNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLH 285
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+LSKME+MGIRSAIIFVSTCRSCHLLSLLLEELD E ALHSFKSQS RL+A+HRFKSGQ
Sbjct: 286 ILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQ 345
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
ILLATDVASRGLDIPTVDLV+NYDIPRYPRDYVHRVGRTARAGRGGL++S VTQNDVD
Sbjct: 346 VPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVD 405
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
LIHEIEAV+GKQL++F+CKE+EVL +IT+VYKARRVATMK+MDDGFEEKAK RK QKLK
Sbjct: 406 LIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKLKT 465
Query: 475 LAEKGSL 481
LAEKG L
Sbjct: 466 LAEKGLL 472
>gi|147772471|emb|CAN65105.1| hypothetical protein VITISV_021046 [Vitis vinifera]
Length = 592
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/487 (80%), Positives = 430/487 (88%), Gaps = 21/487 (4%)
Query: 1 MDEQILLDRNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDP------NST 54
MDE+ L+D NFPLF+K KP P+P SKN+ TT NP+P +
Sbjct: 104 MDEETLVDENFPLFSK------RKPTPKP-----SKNSTTTA----QNPNPEQPLTRTTN 148
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T + TFA LGLAEWAVQ CKELGMRRPTPVQ HCIP+IL G DVLGLAQTGSGKTAAF
Sbjct: 149 PTSPSSTFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAF 208
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPILHRLAEDP+GV ALV+TPTRELAYQLAEQF+ALGS LHLRC VVVGGMD++ QA++
Sbjct: 209 ALPILHRLAEDPFGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQT 268
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
LM RPHVVIATPGR+KVLLE++PDIP VF+RTKFLVLDEADRVLDVGFEEELRVVFQCLP
Sbjct: 269 LMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLP 328
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
KNRQTLLFSATMTSDLQTLLELS+NKAYFYEAYEGFKTVE+LKQQYIF+PKNVKDVYL+H
Sbjct: 329 KNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLH 388
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+LSKME+MGIRSAIIFVSTCRSCHLLSLLLEELD E ALHSFKSQS RL+A+HRFKSGQ
Sbjct: 389 ILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQ 448
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
ILLATDVASRGLDIPTVDLV+NYDIPRYPRDYVHRVGRTARAGRGGL++S VTQNDVD
Sbjct: 449 VPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVD 508
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
LIHEIEAV+GKQL++F+CKE+EVL +IT+VYKARRVATMK+MDDGFEEKAK RK QKLK
Sbjct: 509 LIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKLKT 568
Query: 475 LAEKGSL 481
LAEKG L
Sbjct: 569 LAEKGLL 575
>gi|449444278|ref|XP_004139902.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Cucumis
sativus]
gi|449475871|ref|XP_004154575.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Cucumis
sativus]
Length = 491
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/481 (75%), Positives = 417/481 (86%), Gaps = 4/481 (0%)
Query: 1 MDEQILLDRNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTV 60
MD+++++DRNFPLF+KP K + KP P P K+ Q+EK T ST + +
Sbjct: 1 MDQEVIVDRNFPLFSKPHRK-KHKPSENPTAVPNVAPKKSLQIEKSTELTTKST---NNI 56
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LGL+EW +QTCKEL M++PT VQTHCIPKIL G DVLG+AQTGSGKTAAFALPIL
Sbjct: 57 TFADLGLSEWIIQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQ 116
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL+E P+GV ALV+TPTRELAYQLAEQF+ALGS L+LRC VVVGGMD+L Q +SL+ RPH
Sbjct: 117 RLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPH 176
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+VIATPGRIKVLLE++PDIP VFS+TKFLVLDEADRVLDVGFEEEL+V+FQCLP+NRQTL
Sbjct: 177 IVIATPGRIKVLLEDNPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPRNRQTL 236
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT DL+TL +LSANKAYFYEAYEGFKTV+ LKQQY+FIPK+VKD+YL+H+LSKME
Sbjct: 237 LFSATMTKDLETLHKLSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHLLSKME 296
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
DMGIRSAIIFV TC+SCHLL LLLE LDQE ALHS KSQS+RL+AL+RFKSG+ +LLA
Sbjct: 297 DMGIRSAIIFVQTCKSCHLLGLLLEALDQEVAALHSVKSQSERLAALYRFKSGRVPVLLA 356
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIPTVDLV+NYDIPR+PRDYVHRVGRTARAGRGGLAVSF+TQNDV LIHEIE
Sbjct: 357 TDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQNDVHLIHEIE 416
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGS 480
A +GKQLE FECKE EVL +IT+VYKAR VA MK++D GFEEK KERKKQK K LAEKG
Sbjct: 417 ANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDGGFEEKVKERKKQKRKTLAEKGL 476
Query: 481 L 481
L
Sbjct: 477 L 477
>gi|255544594|ref|XP_002513358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547266|gb|EEF48761.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 502
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/502 (77%), Positives = 439/502 (87%), Gaps = 14/502 (2%)
Query: 3 EQILLDRNFPLFAKPKSKTRS-----KPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTD 57
E+I +++NFPLF KP SKT KP P+ + + +T ++EK NS T D
Sbjct: 4 EEIQVEKNFPLFFKP-SKTHKPLQTIKPPKAPKTQNRKNDLETPKIEK--EKSTNSITMD 60
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
T F+ LGLAEWAV+TCKELGM+RPTPVQ HCIPKILEGKDVLGLAQTGSGKTA FALP
Sbjct: 61 ETSLFSNLGLAEWAVRTCKELGMKRPTPVQAHCIPKILEGKDVLGLAQTGSGKTATFALP 120
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
ILHRLAEDPYG+ ALVITPTRELAYQLAEQF+ALGS L+LRC VVVGGMD LTQAK+LM
Sbjct: 121 ILHRLAEDPYGIFALVITPTRELAYQLAEQFRALGSCLNLRCAVVVGGMDKLTQAKTLMA 180
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPHVVIATPGR+KVLLE++PDIP VFS+TKFLVLDEADRVLDVGFE+ELRVVFQCLPKNR
Sbjct: 181 RPHVVIATPGRVKVLLEDNPDIPSVFSKTKFLVLDEADRVLDVGFEDELRVVFQCLPKNR 240
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSATMTS+L++LLE+SANKAYFYEAYEGFKTV+TLKQQY+ +PKNVKDVYL+++LS
Sbjct: 241 QTLLFSATMTSNLESLLEVSANKAYFYEAYEGFKTVDTLKQQYVLVPKNVKDVYLVYILS 300
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
KMEDMGIRSAIIFVSTCR+C+LLSLLLEEL++E ALHSFKSQS RLSAL RFKSGQA+I
Sbjct: 301 KMEDMGIRSAIIFVSTCRTCYLLSLLLEELEKEPAALHSFKSQSLRLSALRRFKSGQASI 360
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTVDLV+NYD+PRYPRDYVHRVGRTARAGRGGLA+SF++QND LI
Sbjct: 361 LIATDVASRGLDIPTVDLVVNYDLPRYPRDYVHRVGRTARAGRGGLAMSFISQNDFVLIR 420
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
EIEAV+GKQL EFECKE EVLSDIT+++KAR VATMK++DDGFEEK KERKKQKLK +AE
Sbjct: 421 EIEAVLGKQLGEFECKENEVLSDITKIFKARHVATMKMLDDGFEEKEKERKKQKLKTMAE 480
Query: 478 KGSLKK------RSEKRKKSGE 493
KG LKK R KR+KS E
Sbjct: 481 KGLLKKKKMFNNRKRKRQKSAE 502
>gi|224098856|ref|XP_002311293.1| predicted protein [Populus trichocarpa]
gi|222851113|gb|EEE88660.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/477 (74%), Positives = 402/477 (84%), Gaps = 6/477 (1%)
Query: 6 LLDRNFPLFAKPKSKTRSKPEPQPEPEP-ESKNAKTTQLEKFTNPDPNSTTTDSTVTFAG 64
++D NFPLF SKT +P+ Q P ES + E +NP + T F+
Sbjct: 11 VVDSNFPLF----SKTPKRPKLQKTQNPDESPEIPKLEKEASSNPSNPDSAAAKTTLFSD 66
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LGL+EWA+QTCKELGM+ PT VQ+HCIPKIL G+DVLGLAQTGSGKTAAFALPILHRLAE
Sbjct: 67 LGLSEWALQTCKELGMKNPTQVQSHCIPKILSGRDVLGLAQTGSGKTAAFALPILHRLAE 126
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
DP+GV ALVITPTRELAYQLAEQF+A GS LHLRC VVVGGMDLLTQAK+LM RPHVVIA
Sbjct: 127 DPFGVFALVITPTRELAYQLAEQFRAFGSCLHLRCAVVVGGMDLLTQAKTLMGRPHVVIA 186
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGRIKVLLE +PDI PVFSRTKFLVLDEADR++DVGF+EELRVVF+CLPK+RQTLLFSA
Sbjct: 187 TPGRIKVLLE-NPDISPVFSRTKFLVLDEADRLIDVGFQEELRVVFKCLPKSRQTLLFSA 245
Query: 245 TMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI 304
TMTS+LQTLLELS NKAYFYE YEGFKTV+TL QQYI +PKNVK+VYL+++LSKME+MGI
Sbjct: 246 TMTSELQTLLELSENKAYFYEEYEGFKTVDTLNQQYIQMPKNVKEVYLVYILSKMEEMGI 305
Query: 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364
RSAIIFVS C +C LLS LL+ELD E L+S +SQS RL++LHRFKSGQA+IL+ATD+A
Sbjct: 306 RSAIIFVSACSTCRLLSSLLKELDHEPATLYSLESQSARLASLHRFKSGQASILIATDLA 365
Query: 365 SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424
SRGLDIPTVDLV+NYD+PR P DYVHRVGRTARAGR GLAVS V Q+D L+ IEA VG
Sbjct: 366 SRGLDIPTVDLVINYDLPRDPTDYVHRVGRTARAGREGLAVSLVAQHDGKLMKAIEAEVG 425
Query: 425 KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSL 481
KQ E+FECKE EVLSDIT+VYKARRVA MK+MDDGF+E KERKKQK K LAEKG L
Sbjct: 426 KQFEKFECKENEVLSDITKVYKARRVAKMKMMDDGFDELVKERKKQKQKSLAEKGLL 482
>gi|15219185|ref|NP_173078.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
gi|75336890|sp|Q9SA27.1|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36
gi|4966350|gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family [Arabidopsis thaliana]
gi|332191310|gb|AEE29431.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
Length = 491
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/480 (71%), Positives = 408/480 (85%), Gaps = 10/480 (2%)
Query: 19 SKTRSKPEP--QPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCK 76
SK+R P+ + + + T Q EKFTNP+P+S TT +T F GLGLAEWAV+TCK
Sbjct: 16 SKSRKNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSAT-NFEGLGLAEWAVETCK 74
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
ELGMR+PTPVQTHC+PKIL G+DVLGLAQTGSGKTAAFALPILHRLAEDPYGV ALV+TP
Sbjct: 75 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTP 134
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA+QLAEQFKALGS L+LRC V+VGGMD+LTQ SL++RPH+VI TPGRIKVLLE +
Sbjct: 135 TRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENN 194
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
PD+PPVFSRTKFLVLDEADRVLDVGF++ELR +FQCLPK+RQTLLFSATMTS+LQ LLE
Sbjct: 195 PDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEH 254
Query: 257 SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
S+NKAYFYEAYEG KTV+TL QQ+IF K+ K++YL+H+LS+MED GIRSA+IFVSTCR+
Sbjct: 255 SSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRT 314
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
C LSL+L+EL+ E +A+HS SQS RLSAL +FKSG+ ILLATDVASRGLDIPTVDLV
Sbjct: 315 CQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLV 374
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
+NYDIPR PRDYVHRVGRTARAGRGGLAVS +T+ DV LIH+IE VGK++E + ++
Sbjct: 375 INYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPY---NKK 431
Query: 437 VLSD---ITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSGE 493
V++D +T+V KA+RVA MK++D+GFE+K K+R+K K K LA+KG LKKR KR+KS E
Sbjct: 432 VITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLKKRG-KRQKSTE 490
>gi|297850038|ref|XP_002892900.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
lyrata]
gi|297338742|gb|EFH69159.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
lyrata]
Length = 487
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/477 (70%), Positives = 402/477 (84%), Gaps = 8/477 (1%)
Query: 19 SKTRSKPEP--QPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCK 76
+K+R P+ Q + + + Q EKFTNP+P+ F GLGLAEWAV+TCK
Sbjct: 16 AKSRKNPKTVVQIQSQKLDSDQNAPQFEKFTNPNPSPV-----ANFEGLGLAEWAVETCK 70
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
ELGMR+PTPVQTHC+PKIL G+DVLGLAQTGSGKTAAFALPILHRLAEDPYGV ALV+TP
Sbjct: 71 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTP 130
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA+QLAEQFKALGS L+LRC V+VGGMD+LTQ +SL++RPH+VI TPGRIKVLLE +
Sbjct: 131 TRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTRSLVSRPHIVITTPGRIKVLLENN 190
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
PD+PPVFSRTKFLVLDEADRVLDVGF++ELR +FQCLPK+RQTLLFSATMTS+LQTLLE
Sbjct: 191 PDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQTLLEH 250
Query: 257 SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
S+NKAYFYEAYEG KTV+TL QQ+IF K+ K++YL+H+LS+MED GIRSA+IFVSTCR+
Sbjct: 251 SSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRT 310
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
C LSL+L+EL+ E VA+HS SQS RLSAL +FKSG+ ILLATDVASRGLDIPTVDLV
Sbjct: 311 CQRLSLMLDELEVENVAMHSLNSQSMRLSALSKFKSGKIPILLATDVASRGLDIPTVDLV 370
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
+NYDIPR PRDYVHRVGRTARAGRGGLAVS +T+ DV LIH+IE VGK++E + K
Sbjct: 371 INYDIPRNPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNNKIIT 430
Query: 437 VLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSGE 493
++T+V KA+RVA M+++D+GFE+K K+R+K K K LA+KG LKKRS KR+KS E
Sbjct: 431 DSLEVTKVSKAKRVAMMRMLDNGFEDKVKDRRKLKRKTLADKGLLKKRS-KRQKSTE 486
>gi|356555223|ref|XP_003545934.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine
max]
Length = 591
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/491 (70%), Positives = 396/491 (80%), Gaps = 11/491 (2%)
Query: 1 MDE-QILLDRNFPLFAKPKSKTRSKPE---PQPEPEPESKNAKTTQLEKFTN-PDPNSTT 55
MD+ Q+L D NFPLF P+ KT S P P + T+ E+ + PD +T
Sbjct: 1 MDQSQLLHDPNFPLFKTPR-KTPSSPAVTTTATSKPPSTAANPTSDGERIEDHPDETATV 59
Query: 56 TDSTV-----TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
D+ TF LGLAEWAV+TC+ELGMRRP VQ CIP++LEG+ VLG+ +TGSGK
Sbjct: 60 ADTDTDADAETFGDLGLAEWAVKTCRELGMRRPRGVQRRCIPRVLEGRHVLGVDETGSGK 119
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
TAAFALPILHRLAE P+GV ALV+TPTRELA+QLAEQF+ALGS +HLR VVVGGMD+L
Sbjct: 120 TAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLR 179
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
QAK L RPH+VIATPGRI LL +PDIPPVFSRTKFLVLDEADRVLDVGF+EELR +F
Sbjct: 180 QAKELAARPHLVIATPGRIHALLRNNPDIPPVFSRTKFLVLDEADRVLDVGFQEELRFIF 239
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
QCLP+NRQ L FSAT TS+LQ L +K Y YEAYEGFKTVETLKQQ IFIPK VKDV
Sbjct: 240 QCLPENRQNLFFSATTTSNLQKLRGRYQDKMYVYEAYEGFKTVETLKQQAIFIPKKVKDV 299
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YLMH+L KMEDMGIRSAI+F+STCR CH LSL+LE LDQEA AL+SFKSQ+QRL ALH+F
Sbjct: 300 YLMHILDKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALHQF 359
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG+ +ILLATDVASRGLDIPTVDLV+NYD+PR+PRDY+HRVGRTARAGRGGLA+S VTQ
Sbjct: 360 KSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQ 419
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
NDVDLIHEIEA++ KQLE E KE + LS + +V+ A+ VA MK++DDGFEEKAKERKKQ
Sbjct: 420 NDVDLIHEIEALIEKQLEMIEYKENDALSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQ 479
Query: 471 KLKMLAEKGSL 481
KLKML EKG L
Sbjct: 480 KLKMLEEKGLL 490
>gi|356528665|ref|XP_003532920.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine
max]
Length = 587
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/486 (69%), Positives = 388/486 (79%), Gaps = 15/486 (3%)
Query: 4 QILLDRNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTT------- 56
Q+L D NFPLF P S P K TT + +N + +
Sbjct: 5 QLLHDPNFPLFKTPSS-------PAVTTTATHKPLSTTPITTTSNGERREDHSVETAATV 57
Query: 57 -DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
F LGLAEWAV+TC+ELGMRRP PVQ CIP++LEG+ VLG+ +TGSGKTAAFA
Sbjct: 58 AADAEAFGDLGLAEWAVKTCRELGMRRPRPVQRRCIPRVLEGRHVLGIDETGSGKTAAFA 117
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPILHRLAE P+GV ALV+TPTRELA+QLAEQF+ALGS +HLR VVVGGMD+L Q K L
Sbjct: 118 LPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLRQTKEL 177
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPH+VIATPGRI LL +PDIPPVFSRTKFLVLDEADRVLDVGF+EELR +FQCLP+
Sbjct: 178 AARPHLVIATPGRIHALLRNNPDIPPVFSRTKFLVLDEADRVLDVGFQEELRFIFQCLPE 237
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
NRQ L FSAT TS+LQ L E +K Y YEAYEGFKTVETLKQQ IFIPK VKDVYLMH+
Sbjct: 238 NRQNLFFSATTTSNLQKLRERYQDKMYVYEAYEGFKTVETLKQQAIFIPKKVKDVYLMHI 297
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+KMEDMGIRSAI+F+STCR CH LSL+LE LDQEA AL+SFKSQ+QRL ALH+FKSG+
Sbjct: 298 LAKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALHQFKSGKV 357
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+ILLATDVASRGLDIPTVDLV+NYD+PR+PRDY+HRVGRTARAGRGGLA+S VTQNDVDL
Sbjct: 358 SILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDL 417
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKML 475
IHEIEA++ KQLE E KE EVLS + +V+ A+ VA MK++DDGFEEKAKERKKQKLKML
Sbjct: 418 IHEIEALIEKQLEMIEYKENEVLSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLKML 477
Query: 476 AEKGSL 481
A+KG L
Sbjct: 478 ADKGLL 483
>gi|357451623|ref|XP_003596088.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355485136|gb|AES66339.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 513
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/490 (68%), Positives = 398/490 (81%), Gaps = 10/490 (2%)
Query: 4 QILLDRNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFA 63
Q L+D+NFPLF KP +P P + Q + T+ NS ++T TF+
Sbjct: 5 QPLVDQNFPLF---------KPSRKPSINPTLPISNKPQNDVVTHETLNSNPENTTATFS 55
Query: 64 GLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA 123
LGL+EWAV+TCKELGM+ P VQ HCIP+IL G+ V+G+ QTGSGKTAAFALPIL RLA
Sbjct: 56 DLGLSEWAVKTCKELGMKTPRRVQQHCIPQILAGRHVIGIDQTGSGKTAAFALPILQRLA 115
Query: 124 EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVI 183
E +GV ALV+TPTRELA+QLAEQF+ALGS L LR VVVGGMD+L Q K L+ RPH+VI
Sbjct: 116 EHTFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIAVVVGGMDMLRQTKELVARPHLVI 175
Query: 184 ATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243
ATPGRIKVLL+++P+I PVF+RTKFLVLDEADRVLDVGF++EL+ +FQCLP+NRQ L FS
Sbjct: 176 ATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQDELKFIFQCLPENRQNLFFS 235
Query: 244 ATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMG 303
AT TS+LQ L E +K Y +EAYEGFKTVE LKQQ +FIPKNVKDVYL+H+LSKMEDMG
Sbjct: 236 ATTTSNLQKLRERYQDKLYAFEAYEGFKTVENLKQQVVFIPKNVKDVYLLHILSKMEDMG 295
Query: 304 IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363
IRSAI+FVSTCR CH L+L+LE LDQEA AL+SF+SQ+QRL ALH FKSG+ +LLATDV
Sbjct: 296 IRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHDFKSGKVPVLLATDV 355
Query: 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVV 423
A RGLDIPTVDLV+NYD+PR+PRDY+HRVGRTARAGRGGLA+S VTQNDVDLI EIE ++
Sbjct: 356 AGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIETLI 415
Query: 424 GKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKK 483
+QLE E KE EVLS + +V+ A+ VA MK+MDDGFEEKAKERKKQKLKML EKG LK+
Sbjct: 416 ERQLEMIEYKENEVLSLMKKVFSAKNVAKMKMMDDGFEEKAKERKKQKLKMLEEKGLLKQ 475
Query: 484 RSEKRKKSGE 493
RS KRK++ E
Sbjct: 476 RS-KRKRNKE 484
>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/470 (62%), Positives = 367/470 (78%), Gaps = 12/470 (2%)
Query: 12 PLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWA 71
PLF+K KP+ K A L D ++ TF GLGL +W
Sbjct: 8 PLFSK------RKPKAAVAAASNKKTAAPALL------DEDAKAAKEITTFEGLGLTDWL 55
Query: 72 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA 131
V+ CKELGM+RPT VQ C+P+IL GKDV GLAQTGSGKTAAFALPIL +LAE+PYGV A
Sbjct: 56 VRACKELGMKRPTLVQQGCVPQILAGKDVFGLAQTGSGKTAAFALPILQKLAENPYGVFA 115
Query: 132 LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKV 191
LV+TPTRELA+Q+++QFKALGS ++LR VVVGGMD+ TQAK+LM RPH+VIATPGR++
Sbjct: 116 LVLTPTRELAFQISDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQRPHIVIATPGRLRD 175
Query: 192 LLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQ 251
DP IP VF++ K+LVLDEADR++DVGFE ELR VF+ +P NRQTLLFSATMTS+L+
Sbjct: 176 HFMNDPGIPDVFAKAKYLVLDEADRLMDVGFESELRSVFETMPSNRQTLLFSATMTSNLK 235
Query: 252 TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFV 311
L +LS +KA+FY+ YEGFKTVE L+QQYI P NVKDVYLMH++S +E+ IRS IIF
Sbjct: 236 ALHDLSLDKAFFYQQYEGFKTVEALQQQYILTPANVKDVYLMHIMSTLEERKIRSVIIFA 295
Query: 312 STCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP 371
S+CR+CHLLSL++ EL+ + ALHS K+Q QRL++L RFKSGQ +IL+ATDVASRGLDIP
Sbjct: 296 SSCRTCHLLSLMMSELEVDTTALHSMKTQQQRLASLSRFKSGQVSILIATDVASRGLDIP 355
Query: 372 TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431
TVDLV+NYDIPR+ RDYVHRVGRTARAGRGG AVS +TQ DV L+ +IE ++GK+LEE+E
Sbjct: 356 TVDLVINYDIPRFTRDYVHRVGRTARAGRGGSAVSLITQYDVQLVQDIEELLGKKLEEYE 415
Query: 432 CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSL 481
E +VL IT+VYKA+RVA +K++D GFE+K K RK+QK+K L +KG L
Sbjct: 416 LDEDKVLKSITKVYKAKRVAMLKIVDSGFEDKVKTRKEQKVKTLVDKGLL 465
>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
Length = 469
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 293/465 (63%), Positives = 367/465 (78%), Gaps = 6/465 (1%)
Query: 12 PLFAKPKSKTRSKPEPQPEP---EPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLA 68
PLF++ K + + P P P+ NA++T++ K ++ S F LG+A
Sbjct: 5 PLFSRAALKKKKRKRGDPVPAAERPDDGNARSTEICKESDAPEGGGGGGS---FEELGVA 61
Query: 69 EWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG 128
EW V CKELGMR PTPVQ C+P+IL+GKDVLG+AQTGSGKTAAFALPIL RL E+PYG
Sbjct: 62 EWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQRLGENPYG 121
Query: 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGR 188
+ ALV+TPTRELA+Q+++QFKALG+G+HLRC VVVGGMD+ TQA+ LM RPHVVIATPGR
Sbjct: 122 IFALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILMERPHVVIATPGR 181
Query: 189 IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTS 248
IK + DPDI FS+TKFLVLDEAD +LD GF++EL+ +F + K RQTLLFSATMT
Sbjct: 182 IKAHIGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQRQTLLFSATMTG 241
Query: 249 DLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
DLQ L +L ++A+FY+AYEG KTVE+L Q+YIF+P VK+VYL ++L +E IRS I
Sbjct: 242 DLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTYLLENLELEDIRSVI 301
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IFVS CR+CHLLSL+L+EL AVALHS K+Q QRL+AL++FKSGQATIL+ATDVASRGL
Sbjct: 302 IFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILIATDVASRGL 361
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIPTVDLV+NYDIPR+ +DYVHRVGRTARAGRGG A+S VT+ DV+L+HE+E+ +GK+LE
Sbjct: 362 DIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVHEVESFLGKKLE 421
Query: 429 EFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
E+E E +VL +IT+VYKA+RVA MK+ D G +EK RKK K+K
Sbjct: 422 EYEVSEADVLKNITKVYKAKRVAIMKMEDSGIQEKMDARKKMKVK 466
>gi|302804021|ref|XP_002983763.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
gi|300148600|gb|EFJ15259.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
Length = 418
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/409 (68%), Positives = 342/409 (83%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LG+AEW V CKELGMR PTPVQ C+P+IL+GKDVLG+AQTGSGKTAAFALPIL RL E
Sbjct: 7 LGVAEWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQRLGE 66
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
+PYG+ ALV+TPTRELA+Q+++QFKALG+G+HLRC VVVGGMD+ TQA+ L RPHVVIA
Sbjct: 67 NPYGIFALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILTERPHVVIA 126
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGRIK L DPDI FS+TKFLVLDEAD +LD GF++EL+ +F + K RQTLLFSA
Sbjct: 127 TPGRIKAHLGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQRQTLLFSA 186
Query: 245 TMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI 304
TMT DLQ L +L ++A+FY+AYEG KTVE+L Q+YIF+P VK+VYL ++L +E I
Sbjct: 187 TMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTYLLENLELGDI 246
Query: 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364
RS IIFVS CR+CHLLSL+L+EL AVALHS K+Q QRL+AL++FKSGQATIL+ATDVA
Sbjct: 247 RSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILIATDVA 306
Query: 365 SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424
SRGLDIPTVDLV+NYDIPR+ +DYVHRVGRTARAGRGG A+S VT+ DV+L+HE+E+ +G
Sbjct: 307 SRGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVHEVESFLG 366
Query: 425 KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
K+LEE+E E +VL +IT+VYKA+RVA MK+ D G +EK RKK K+K
Sbjct: 367 KKLEEYEVSESDVLKNITKVYKAKRVAIMKMEDSGIQEKMDARKKMKVK 415
>gi|357121829|ref|XP_003562620.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like
[Brachypodium distachyon]
Length = 500
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/503 (58%), Positives = 372/503 (73%), Gaps = 29/503 (5%)
Query: 9 RNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFT-----------------NPDP 51
R F +F+KPKS R++P+ Q + +P+ N +P
Sbjct: 8 RPFLVFSKPKSNRRAEPQAQVQAQPKPARPDPAPAPAAETDSSSGSDSDSEPTPTENGEP 67
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+ +FA LGL+EW V C LGMRRPT VQ CIP+ L G++VLG+A+TGSGKT
Sbjct: 68 CQADAAAPASFADLGLSEWLVDVCSSLGMRRPTDVQRRCIPRALAGENVLGIAETGSGKT 127
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AAFALPILHRL EDP+GV ALV+TPTRELA QLAEQF+ALGS L LRC +GG D L Q
Sbjct: 128 AAFALPILHRLGEDPFGVAALVVTPTRELAAQLAEQFRALGSPLGLRCLAAIGGFDSLAQ 187
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
AK L RPHVV+ATPGRI L+ DPD+ VF+RTKFLVLDEADRV+D FEE+L+V+F
Sbjct: 188 AKGLSRRPHVVVATPGRIATLINNDPDLAKVFARTKFLVLDEADRVIDSNFEEDLKVIFD 247
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
CLPK RQT LFSATM+ +L++LLELS + +YF+EAYEGFKTVETLKQ+YI IP + K+++
Sbjct: 248 CLPKKRQTFLFSATMSENLRSLLELSGDNSYFFEAYEGFKTVETLKQKYIHIPPDGKELH 307
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
LM++LSKM++ IRSAI+FVSTCR+C L LLEEL + AV+LHS K+QS+RLSALHRFK
Sbjct: 308 LMYLLSKMKEDNIRSAIVFVSTCRTCQYLDFLLEELGRSAVSLHSHKAQSRRLSALHRFK 367
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT-Q 410
SGQ +L+ATDVASRGLDI TVDLV+NYDIPR+PRDY+HRVGRTARA RGGL++SF++ Q
Sbjct: 368 SGQVPVLIATDVASRGLDIQTVDLVINYDIPRFPRDYIHRVGRTARATRGGLSISFMSLQ 427
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
D+ L+HE+E VGK+ + +EC ++EV DIT+V+KARR+A M++ D+G E+K ++RK Q
Sbjct: 428 RDICLLHEVEDDVGKRFDAYECDDKEVTKDITKVFKARRLANMRMADEGHEDKVQDRKDQ 487
Query: 471 KLKMLAEKGSLKKRSEKRKKSGE 493
KKR + RK+ E
Sbjct: 488 -----------KKRDQARKRKHE 499
>gi|242050992|ref|XP_002463240.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
gi|241926617|gb|EER99761.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
Length = 502
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/424 (66%), Positives = 338/424 (79%), Gaps = 3/424 (0%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
D + + + TFA LGL++W V C LGMRRPT VQ CIP+ L G+DVLG+A+TGSG
Sbjct: 66 DVEAASGAAPATFADLGLSQWLVDACDALGMRRPTAVQRRCIPRALAGEDVLGIAETGSG 125
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFALPILHRL EDPYGV AL + PTRELA QLAEQF+ALG+ L LRC +GG D L
Sbjct: 126 KTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSL 185
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QAK L RPHVV+ATPGRI L+++DPD+ VF+RTKFLVLDEADRVLDV FEEELRV+
Sbjct: 186 AQAKGLSRRPHVVVATPGRIATLVKDDPDLAKVFARTKFLVLDEADRVLDVNFEEELRVI 245
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
F CLPK RQT LFSATM+ +L++LLELS NK+YF+EAYEGFKTVETLKQQYI +P K+
Sbjct: 246 FGCLPKKRQTFLFSATMSDNLRSLLELSGNKSYFFEAYEGFKTVETLKQQYIHVPPQGKE 305
Query: 290 VYLMHVLSKMEDMG---IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
++L ++LS M++ IRSAI+FVS C C L LLLEEL AVAL+S KSQ+QRL A
Sbjct: 306 LHLWYLLSIMKEKKEDPIRSAIVFVSKCNVCQYLDLLLEELGYPAVALNSHKSQAQRLLA 365
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L+RFKSGQ IL++TDV SRGLDI TVDLV+NYD+P PRDY+HRVGRTARA RGGLA+S
Sbjct: 366 LNRFKSGQVPILISTDVGSRGLDIQTVDLVINYDMPMSPRDYIHRVGRTARASRGGLAIS 425
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
FVTQ D+ L+HEIE VVGKQLE +EC ++EV DIT+V+KARR+A M+ D+G +EK +
Sbjct: 426 FVTQKDICLLHEIEDVVGKQLEAYECNDKEVTKDITKVFKARRLAKMRSRDEGHDEKVEA 485
Query: 467 RKKQ 470
RK+Q
Sbjct: 486 RKEQ 489
>gi|125559280|gb|EAZ04816.1| hypothetical protein OsI_26993 [Oryza sativa Indica Group]
Length = 501
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/431 (63%), Positives = 340/431 (78%), Gaps = 12/431 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LGL++W V C LGMR PT VQ CIP+ LEG+DVLG+A+TGSGKTAAFALPILH
Sbjct: 78 TFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILH 137
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL EDPYGV AL + PTRELA QLAEQF+ALG+ L LRC +GG D L QAK L RPH
Sbjct: 138 RLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPH 197
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VV+ATPGRI L+ +DPD+ VF+RTKFLVLDEADRVLD+ FEE+LRV+F LPK RQT
Sbjct: 198 VVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTF 257
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSAT++ +L++LLELS N +YF+EAYEGFKTV+TLKQ YI +P + K++YL ++LSKM
Sbjct: 258 LFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLFYLLSKMN 317
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ IRS I+FVSTCR+C L LLEEL AV+LHS K QS+RL+ALH FKS + +LLA
Sbjct: 318 EDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLA 377
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV-TQNDVDLIHEI 419
TDVASRGLDI TVDLV+NYD+PRYPRDY+HRVGRTARA RGGL++SF+ TQ D+ L+HEI
Sbjct: 378 TDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEI 437
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKG 479
E VVGKQL ++ + ++V D T+V+KARR+A MK+ D+G E+K + RK+Q
Sbjct: 438 EDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQ--------- 488
Query: 480 SLKKRSEKRKK 490
KKR+++RK+
Sbjct: 489 --KKRAQERKR 497
>gi|115473551|ref|NP_001060374.1| Os07g0633500 [Oryza sativa Japonica Group]
gi|75329662|sp|Q8L4E9.1|RH36_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 36
gi|22093824|dbj|BAC07111.1| DEAD box protein-like [Oryza sativa Japonica Group]
gi|22296386|dbj|BAC10155.1| DEAD box protein-like [Oryza sativa Japonica Group]
gi|113611910|dbj|BAF22288.1| Os07g0633500 [Oryza sativa Japonica Group]
gi|125601204|gb|EAZ40780.1| hypothetical protein OsJ_25257 [Oryza sativa Japonica Group]
Length = 501
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/431 (63%), Positives = 340/431 (78%), Gaps = 12/431 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LGL++W V C LGMR PT VQ CIP+ LEG+DVLG+A+TGSGKTAAFALPILH
Sbjct: 78 TFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILH 137
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL EDPYGV AL + PTRELA QLAEQF+ALG+ L LRC +GG D L QAK L RPH
Sbjct: 138 RLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPH 197
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VV+ATPGRI L+ +DPD+ VF+RTKFLVLDEADRVLD+ FEE+LRV+F LPK RQT
Sbjct: 198 VVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTF 257
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSAT++ +L++LLELS N +YF+EAYEGFKTV+TLKQ YI +P + K++YL ++LSKM
Sbjct: 258 LFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLFYLLSKMN 317
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ IRS I+FVSTCR+C L LLEEL AV+LHS K QS+RL+ALH FKS + +LLA
Sbjct: 318 EDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLA 377
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV-TQNDVDLIHEI 419
TDVASRGLDI TVDLV+NYD+PRYPRDY+HRVGRTARA RGGL++SF+ TQ D+ L+HEI
Sbjct: 378 TDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEI 437
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKG 479
E VVGKQL ++ + ++V D T+V+KARR+A MK+ D+G E+K + RK+Q
Sbjct: 438 EDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQ--------- 488
Query: 480 SLKKRSEKRKK 490
KKR+++RK+
Sbjct: 489 --KKRAQERKR 497
>gi|384246378|gb|EIE19868.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 508
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 270/498 (54%), Positives = 345/498 (69%), Gaps = 28/498 (5%)
Query: 13 LFAKPKSKTRSKPE--------PQPEPEPESKN---------AKTTQLEKFT-NPDPNST 54
LFAK K R K + P PE E +SK+ A+T ++ T +P ST
Sbjct: 14 LFAKQTKKRRRKEKETGDAAQKPPPETENDSKSVEQNTAALGAETAANDEATERQEPAST 73
Query: 55 T-TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
+ ++ VTF LG++EW + CK LGM RPT VQ CIP IL G+DVLG A TGSGKTAA
Sbjct: 74 SGQEAPVTFRSLGISEWLDRVCKSLGMVRPTQVQRGCIPAILGGRDVLGTAHTGSGKTAA 133
Query: 114 FALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
FALPIL RLA +PYG+ ALV+TPTRELA QLA+QF+ALGSG+ L VV+GG+D+ +QAK
Sbjct: 134 FALPILQRLAREPYGIFALVLTPTRELAMQLADQFRALGSGMSLTDAVVIGGLDMQSQAK 193
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
+L RPH+++ATPGR++ LL D+ F+R FLVLDEADR+L+ FE ELRV+ L
Sbjct: 194 ALAQRPHIIVATPGRLRDLLSAHADLAEGFNRVAFLVLDEADRLLEPTFESELRVIASHL 253
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEA--YEGFKTVETLKQQYIFIPKNVKDVY 291
P RQTLLFSAT+T L TL + A+ ++A YEG +T L++ Y+FIP V+++Y
Sbjct: 254 PAQRQTLLFSATLTRSLATLQASALRDAFLFQADAYEGLETAVNLREDYLFIPAKVRELY 313
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+HVL +E+ IRSAI+F STCR CHLLSLLL EL +VALHS +Q +RL+ALHRFK
Sbjct: 314 LVHVLESLEEFSIRSAIVFCSTCRGCHLLSLLLAELGVASVALHSHLTQGRRLAALHRFK 373
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG ILLATDVASRGLDIPTVDLV+NY++P PRDYVHRVGRTARAGRGG A+S VTQ
Sbjct: 374 SGGVPILLATDVASRGLDIPTVDLVVNYELPSLPRDYVHRVGRTARAGRGGWALSLVTQY 433
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
DV+L+ IE+++G QL EF E +VL ITRVY A+R +K ++D E + K
Sbjct: 434 DVELVQHIESLIGHQLREFTLDEAQVLKGITRVYSAKRSVAVKALED-------ESRDDK 486
Query: 472 LKMLAEKGSLKKRSEKRK 489
+ L + S K+++K K
Sbjct: 487 HRQLIRRKSGPKKAKKVK 504
>gi|302835956|ref|XP_002949539.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
nagariensis]
gi|300265366|gb|EFJ49558.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
nagariensis]
Length = 423
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/384 (61%), Positives = 292/384 (76%), Gaps = 1/384 (0%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+EW CK LGM PT VQ CIP IL+G+DV+GLAQTGSGKTAAFALPIL
Sbjct: 40 FKSLGLSEWLCGVCKSLGMNTPTEVQRGCIPAILQGRDVIGLAQTGSGKTAAFALPILQV 99
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
LA+DPYGV ALV+TPTRELA Q+ EQF+ALG+G+ L+ V++GG+D+ QA+ L RPHV
Sbjct: 100 LAKDPYGVFALVLTPTRELAAQICEQFRALGAGMRLKELVIIGGVDMQHQARELARRPHV 159
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ATPGR++ LL+ D + SRT+FLVLDEADRVLD FE++LR V CL ++RQTLL
Sbjct: 160 VVATPGRLRGLLDADGGLSAGLSRTRFLVLDEADRVLDPTFEDDLRYVRFCLRQDRQTLL 219
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS-KME 300
FSATMT L L + S A+ ++AYEG +T + L+++Y+F+P VK+VYL ++L+ +
Sbjct: 220 FSATMTRSLIALQKASLQDAHVFQAYEGLRTADRLREEYLFLPAKVKEVYLHYLLTVVVP 279
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+RSAIIF STCR CHLLS+LLEEL A ALHS KSQ RLSAL RFKS Q +LLA
Sbjct: 280 ARKVRSAIIFCSTCRGCHLLSVLLEELGLPAAALHSGKSQKARLSALARFKSEQVPLLLA 339
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIPTVDLV+NYD+P RDYVHRVGRTARAGR G ++S VTQ DV L+H IE
Sbjct: 340 TDVASRGLDIPTVDLVVNYDLPVLARDYVHRVGRTARAGRSGWSLSLVTQYDVQLVHAIE 399
Query: 421 AVVGKQLEEFECKEQEVLSDITRV 444
++G +L+E + E EVL IT+V
Sbjct: 400 ELIGHKLDEHKLDEDEVLKGITKV 423
>gi|414887756|tpg|DAA63770.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 417
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/324 (69%), Positives = 262/324 (80%), Gaps = 3/324 (0%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL++W V C+ LGMRRPT VQ CIP+ L G DVLG+A+TGSGKTAAFALPILHR
Sbjct: 72 FADLGLSQWLVDACEALGMRRPTAVQRRCIPRALAGADVLGIAETGSGKTAAFALPILHR 131
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L EDPYGV AL + PTRELA QLAEQF+ALG+ L LRC +GG D L QAK L RPHV
Sbjct: 132 LGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLAQAKGLSRRPHV 191
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ATPGRI L++ DPD+ VFSRTKFLVLDEADR+LDV FEEELRV+F CLPK RQT L
Sbjct: 192 VVATPGRIATLVKNDPDLAKVFSRTKFLVLDEADRILDVNFEEELRVIFGCLPKKRQTFL 251
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATM+ +L++LLELS NK+YF+EAYEGFKTVETLKQQYI +P K+++L H+LS M+
Sbjct: 252 FSATMSDNLRSLLELSGNKSYFFEAYEGFKTVETLKQQYIHVPPQGKELHLWHLLSVMKG 311
Query: 302 MG---IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
IRSAI+FVSTC+ C L LLLEEL AVAL+S KSQ+QRLSAL+RFKSGQ +L
Sbjct: 312 KTEDPIRSAIVFVSTCKDCQYLDLLLEELRYPAVALNSHKSQAQRLSALNRFKSGQVPVL 371
Query: 359 LATDVASRGLDIPTVDLVLNYDIP 382
LATDV SRGLDI TVDLV+NYD+P
Sbjct: 372 LATDVGSRGLDIQTVDLVINYDMP 395
>gi|307110624|gb|EFN58860.1| hypothetical protein CHLNCDRAFT_48551 [Chlorella variabilis]
Length = 407
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/382 (61%), Positives = 297/382 (77%), Gaps = 6/382 (1%)
Query: 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139
MR PT VQ IP +L G++V+G+A TGSGKTAAFALPIL +LA++P+GV ALV+TPTRE
Sbjct: 1 MREPTQVQRGTIPAVLAGRNVIGVAHTGSGKTAAFALPILQKLAKNPFGVFALVLTPTRE 60
Query: 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI 199
LA+QLA+QF+ALG+G+ L+ VVVGG+D+ QAK L RPHVVIATPGR++ LL+ D ++
Sbjct: 61 LAFQLADQFRALGTGMSLKDCVVVGGLDMTAQAKELARRPHVVIATPGRLRGLLQLDGEL 120
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSAN 259
VF R +FLVLDEADR+L+ FE EL VV LP+ RQTLLFSATMT QTL+EL
Sbjct: 121 ARVFGRARFLVLDEADRLLEPSFESELAVVLGALPERRQTLLFSATMT---QTLVELQKQ 177
Query: 260 ---KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
AY ++AYEG +T L+Q+Y+F+P VK+VYL+H+L ++E++ RSAIIF TC+
Sbjct: 178 LLRDAYHFQAYEGLQTAAKLRQEYLFLPAKVKEVYLVHLLGQLEELQCRSAIIFAGTCKG 237
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
CHLLSLLLEEL A ALHS K Q RL ALHRFKSG ILLATDVASRGLDIP+VDLV
Sbjct: 238 CHLLSLLLEELGIAAAALHSHKPQRARLEALHRFKSGSVPILLATDVASRGLDIPSVDLV 297
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
+NYD+P+ RDYVHRVGRTARAGR G ++SFVTQ D+DL+ +IE +VG+QL +FE +E E
Sbjct: 298 VNYDLPQMARDYVHRVGRTARAGRRGWSLSFVTQYDIDLVQQIEVLVGQQLGKFELEEAE 357
Query: 437 VLSDITRVYKARRVATMKLMDD 458
L IT+VY A+R A +++ ++
Sbjct: 358 ALKGITKVYSAKRAAALRVAEE 379
>gi|159467789|ref|XP_001692074.1| hypothetical protein CHLREDRAFT_128577 [Chlamydomonas reinhardtii]
gi|158278801|gb|EDP04564.1| predicted protein [Chlamydomonas reinhardtii]
Length = 488
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/448 (53%), Positives = 305/448 (68%), Gaps = 17/448 (3%)
Query: 12 PLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEK--------------FTNPDPNSTTTD 57
P+ A + R+ +P + +P N + + + ++ +D
Sbjct: 43 PIAAGAEGDKRASAKPSRQQQPTGANGASDAGGEGEGAGAGAAERSGGVASTSGHTDLSD 102
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
F GLGL+EW CK LGM +PT VQ CIP IL+G+DV+GLAQTGSGKTAAFALP
Sbjct: 103 VPTDFKGLGLSEWLCGVCKSLGMSQPTDVQRGCIPAILKGRDVIGLAQTGSGKTAAFALP 162
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL LA+DPYGV ALV+TPTRELA Q++EQF+ALG+G+ L+ VV+GG+D+ QA+ L
Sbjct: 163 ILQALAKDPYGVFALVLTPTRELAVQISEQFRALGAGMRLKELVVIGGVDMQQQARELAK 222
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPHVV+ATPGR+ + + +R +FLVLDEADRVLD FE++LR + + LP R
Sbjct: 223 RPHVVVATPGRLADWVMS--GLAAGMARCRFLVLDEADRVLDSTFEDDLRRILKALPAAR 280
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSATMT L L S A+ ++AYEG +T + LK++Y+F+P VK+VYL H+L+
Sbjct: 281 QTLLFSATMTKSLIALQRQSLADAHVFQAYEGLRTADKLKEEYLFLPAKVKEVYLHHLLT 340
Query: 298 -KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ +RSAIIF TCR CHLLSLLLEEL AVALHS KSQ RL+AL RFKS Q
Sbjct: 341 VVLPARKVRSAIIFAGTCRGCHLLSLLLEELGLPAVALHSGKSQKGRLAALARFKSEQVP 400
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+LLATDVASRGLDIP+VD V+N+D+P RDYVHRVGRTARAGR G +VS VTQ DV L+
Sbjct: 401 LLLATDVASRGLDIPSVDAVINFDLPMLARDYVHRVGRTARAGRSGWSVSLVTQYDVGLV 460
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRV 444
IE ++G LE+ +EQEVL IT+V
Sbjct: 461 GAIEELIGHTLEQHVLEEQEVLKGITKV 488
>gi|301122021|ref|XP_002908737.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262099499|gb|EEY57551.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 518
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/497 (47%), Positives = 319/497 (64%), Gaps = 49/497 (9%)
Query: 20 KTRSKPEPQ---PEPEPESKNAKTTQLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQT 74
K R P P+ E P + + +E D S + +F LG+ W V+
Sbjct: 7 KRRRAPAPKLLNEESTPAVSSDSDSSIETIAKSDKVQVENASNILISFLNLGVDPWLVKR 66
Query: 75 CKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134
C+ LG+R PTPVQ HCIP IL G+DV+G AQTGSGKTAAFALPILH L++DPYG ALV+
Sbjct: 67 CELLGIRHPTPVQAHCIPPILAGRDVIGCAQTGSGKTAAFALPILHTLSKDPYGPYALVL 126
Query: 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLL 193
TPTRELA+Q+A+QF A GS + +RC V+VGG+D+L Q+ +L RPH+++ATPGR + LL
Sbjct: 127 TPTRELAFQIADQFNAFGSSMAVRCAVIVGGVDMLKQSLTLQQRPHIIVATPGRFRDHLL 186
Query: 194 EEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL 253
D PP S K++VLDEADR+LDV F ++L +F LP RQTLLFSATMT++L L
Sbjct: 187 RAD---PPNISLVKYVVLDEADRLLDVSFAKDLSFIFDKLPTKRQTLLFSATMTANLDRL 243
Query: 254 LELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMG--------- 303
+ + ++ A+ ++A KTV TLKQ Y+FIP VK YLM+++ KM D
Sbjct: 244 EQTALSDDAFRFDATPSVKTVATLKQFYLFIPAQVKMTYLMYLM-KMLDPNEEEEEESNR 302
Query: 304 ---------------------------IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHS 336
+RS +IFV+TC+ C L+ + EL + V LHS
Sbjct: 303 KVTKSRKGKKDQELEKLLEAATSSKRQLRSMMIFVATCKMCELVGEIGNELGTKCVTLHS 362
Query: 337 FKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTA 396
SQ++RL+AL +FKSG + IL++TDVASRGLDIP VD+VLN+D+PR DY+HRVGRTA
Sbjct: 363 MLSQNRRLAALGKFKSGLSHILISTDVASRGLDIPEVDVVLNFDLPRDADDYIHRVGRTA 422
Query: 397 RAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK--EQEVLSDITRVYKARRVATMK 454
RAGR G A+S VTQ+D++L+ IE VGK+++++E E++VL + V A R+A MK
Sbjct: 423 RAGRSGQAISLVTQHDIELLQNIEDKVGKKMDDYETDAPEKKVLKLLNDVTTATRIAKMK 482
Query: 455 LMDDGFEEKAKERKKQK 471
L + GF++K RK ++
Sbjct: 483 LTERGFDDKVHARKTKR 499
>gi|348676065|gb|EGZ15883.1| hypothetical protein PHYSODRAFT_504921 [Phytophthora sojae]
Length = 445
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/420 (52%), Positives = 303/420 (72%), Gaps = 11/420 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+ W V+ C+ LG+R PTPVQ HCIP IL G+DV+G AQTGSGKTAAFALPIL
Sbjct: 3 ISFLNLGVDPWLVKRCELLGIRHPTPVQVHCIPPILSGRDVIGCAQTGSGKTAAFALPIL 62
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
H L++DPYG ALV+TPTRELA+Q+A+QF A GS + +RC V+VGG+D+L Q+ +L RP
Sbjct: 63 HTLSKDPYGPYALVLTPTRELAFQIADQFNAFGSSMAVRCAVIVGGVDMLKQSLTLQQRP 122
Query: 180 HVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
H+++ATPGR + LL + PP S K++VLDEADR+LDV F ++L +F LP RQ
Sbjct: 123 HIIVATPGRFRDHLLRVE---PPNISLVKYVVLDEADRLLDVSFAKDLSFIFDKLPAKRQ 179
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIP---KNVKDV-YLM 293
TLLFSATMT++L L + + ++ A+ ++ KTV TLKQ Y+FIP K +D+ L+
Sbjct: 180 TLLFSATMTANLDRLEQTALSDDAFRFDTTPSVKTVATLKQFYLFIPAQGKKDQDLEQLL 239
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
+ +RS +IFVSTC+ C L+ + EL + V LHS SQ++RL+AL +FKSG
Sbjct: 240 EAATSSSKRQLRSMMIFVSTCKMCELVGEIGNELGTKCVTLHSMMSQNRRLAALGKFKSG 299
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ IL++TDVASRGLDIP VD+VLN+D+PR DY+HRVGRTARAGR G A+S VTQ+D+
Sbjct: 300 LSHILISTDVASRGLDIPEVDVVLNFDLPRDADDYIHRVGRTARAGRSGQAISLVTQHDI 359
Query: 414 DLIHEIEAVVGKQLEEFECK--EQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
+L+ IEA VGK+++++E + E++VL + V A RVA MKL + GF++K RK ++
Sbjct: 360 ELLQNIEAKVGKKMDDYEAEAPEKKVLELLNDVTTATRVAKMKLTERGFDDKVHARKAKR 419
>gi|443682977|gb|ELT87384.1| hypothetical protein CAPTEDRAFT_162583 [Capitella teleta]
Length = 460
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/441 (49%), Positives = 306/441 (69%), Gaps = 7/441 (1%)
Query: 53 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
T+ +ST +F LGL +W V+ C+ +GM RPTP+Q +C+PKIL G D +G A+TGSGK
Sbjct: 7 GTSGESTFLKSFVDLGLNDWLVKQCEAVGMTRPTPIQLNCVPKILSGHDCIGCAKTGSGK 66
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
TAAFALPIL +L EDPYG+ ALV+TPTRELAYQ+ EQF LG + L+ ++ GG D++
Sbjct: 67 TAAFALPILQKLCEDPYGIFALVLTPTRELAYQIGEQFSVLGKPIGLKEAIITGGRDMID 126
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L +PHVV++TPGR+ L + D+ + FLV+DEADR+L+ F E+L+ +F
Sbjct: 127 QGLLLAQKPHVVVSTPGRLADHLRTNADVS--LKKIAFLVMDEADRLLEDNFGEQLQTIF 184
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK RQTLLFSATMT L+ L +++ NK +F+++ + TV++L QQY+ +P +VKD
Sbjct: 185 AALPKKRQTLLFSATMTDTLKELEDVALNKPFFWQSKDKVATVDSLTQQYVLMPADVKDA 244
Query: 291 YLMHVLSKM-EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YLMH+L K E+ S +IF +TC+ C +L L+ +E+ E V+LHS+ Q RLS+L +
Sbjct: 245 YLMHILRKFTEENPSSSVMIFTNTCKYCQILGLVAKEVGLECVSLHSYLMQKIRLSSLAK 304
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FKS Q I+ ATDVASRGLDIPTVDLV+N++IP P++YVHRVGRTARAGR G A++ VT
Sbjct: 305 FKSHQVKIMFATDVASRGLDIPTVDLVINHNIPNKPKNYVHRVGRTARAGRLGDAITMVT 364
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
Q DV+L+H IE + +L E + + EV +T V ARR A +KL + F EK ++ K
Sbjct: 365 QFDVNLVHAIEDHINAKLVEHKVDDDEVAKIVTEVSVARREAQIKLDEQDFGEKKEQNK- 423
Query: 470 QKLKMLAEKGSLKKRSEKRKK 490
+++M+ E + + K++K
Sbjct: 424 -RMQMVLEGKDPDEVARKKRK 443
>gi|405961989|gb|EKC27711.1| Putative ATP-dependent RNA helicase DDX49 [Crassostrea gigas]
gi|405977898|gb|EKC42325.1| Putative ATP-dependent RNA helicase DDX49 [Crassostrea gigas]
Length = 464
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/414 (50%), Positives = 291/414 (70%), Gaps = 3/414 (0%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL EW C +G+R+PTP+Q +CIP ILEGKD +G A+TGSGKTAAFALPIL +
Sbjct: 18 FEKLGLNEWLWTQCHNMGLRQPTPIQVNCIPPILEGKDCIGCAKTGSGKTAAFALPILQK 77
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDP+G+ ALV+TPTRELA+Q+AEQF LG +++R V+ GG+D++ Q L +PH+
Sbjct: 78 LSEDPFGIFALVLTPTRELAFQIAEQFNVLGKPINVRVTVITGGLDMMQQGIDLQVKPHI 137
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
VI+TPGR+ L+ + KFLVLDEADR+++ F E+L +F+ LPK RQTLL
Sbjct: 138 VISTPGRLADHLQSCDTFS--LRKIKFLVLDEADRLIEDDFGEQLETIFKVLPKKRQTLL 195
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATMT L+ L +++ NK +F++ TVE LKQ Y+ +P ++KD YLM +L K +
Sbjct: 196 FSATMTKHLKDLQDVAMNKPFFWQQKSEVATVEGLKQYYVLMPADIKDAYLMQILDKYTE 255
Query: 302 MGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ +S+I IF +TC+ +L ++ +L V LHS Q +RL+AL +FKS Q IL+A
Sbjct: 256 INKKSSIMIFTNTCKYTQILGMVCTQLGLPCVVLHSMIRQKERLAALAKFKSNQINILIA 315
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIPTVDL++N+++P P+DYVHRVGRTARAGR G A++ VTQ DV L+H IE
Sbjct: 316 TDVASRGLDIPTVDLIINHNVPNKPKDYVHRVGRTARAGRCGTAITLVTQFDVRLVHAIE 375
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
V ++EE++ KE++V+ + V A+R A ++L + F + + K++KL M
Sbjct: 376 EFVNSKMEEYDTKEKDVMKILVEVATAKREAEIRLDERDFGVQKEINKRKKLLM 429
>gi|412990251|emb|CCO19569.1| ATP-dependent RNA helicase DBP8 [Bathycoccus prasinos]
Length = 420
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 198/410 (48%), Positives = 289/410 (70%), Gaps = 1/410 (0%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S TF LG+ +W + +LG+ T VQ CIP IL+G DV+G +QTGSGKTA FALP
Sbjct: 7 SIRTFCSLGIKKWLAENAFKLGLCEATTVQKACIPPILKGLDVIGTSQTGSGKTATFALP 66
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
ILH L++D YG+ AL +TPTRELA Q++EQF AL +GL LRC+V+ GG ++ Q +S++
Sbjct: 67 ILHILSQDSYGIFALCMTPTRELAVQISEQFSALSAGLTLRCQVITGGEEIQAQTRSILR 126
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPH+++ATPGR+ P + F +FLVLDEADR+L+ FE ELR++F+ +P R
Sbjct: 127 RPHIIVATPGRLMDHFLNSPQVIGCFQNLRFLVLDEADRLLEPSFESELRILFENIPSKR 186
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSA++T ++ L ++ N A+ +EA+EG K V + +Q+Y F+P+ ++D YL+H+L
Sbjct: 187 QTLLFSASITRNIAALQHITMNDAFHFEAFEGLKAVSSCRQEYCFLPRVMRDAYLLHILQ 246
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ E+ IRS+IIF ST RSC +LS +L++L V+LHS K Q +R + RFKSG+ +I
Sbjct: 247 QRENWDIRSSIIFTSTVRSCMILSGILDKLGIVTVSLHSMKKQKERKDSFARFKSGEVSI 306
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
LLATD+ASRGLDIPTVD+V+NY++P +DY+HR+GRTARAGR G +++ VTQ+DV ++
Sbjct: 307 LLATDIASRGLDIPTVDMVINYEVPIASKDYIHRIGRTARAGRSGRSITLVTQHDVKIVQ 366
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD-DGFEEKAKE 466
+IE + ++ E+E++ ++ V ARR + L++ GF EK +
Sbjct: 367 KIEDAIDSKMRCLSLPEEEIVKNMNSVGSARRSVKISLLERTGFGEKVNK 416
>gi|395513190|ref|XP_003760812.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Sarcophilus
harrisii]
Length = 509
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/417 (50%), Positives = 293/417 (70%), Gaps = 6/417 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V+FA LGLA W V CK+LG++ PTPVQ +C+P ILEG+D +G A+TGSGKTAAF LPIL
Sbjct: 2 VSFAELGLASWLVAQCKQLGLKHPTPVQQNCVPAILEGRDCMGCAKTGSGKTAAFVLPIL 61
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +P
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKECIIVGGMDMVAQALELSRKP 121
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKN 236
HVVIATPGR+ L + +FLV+DEADR+L+ G F ++L V+F P
Sbjct: 122 HVVIATPGRLADHLRSSSTFN--IKKIRFLVMDEADRLLEQGCTDFTKDLEVIFDAAPTQ 179
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTLLFSAT+T L+ L ++AN+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 180 RQTLLFSATLTDTLKVLQGIAANRPFFWEAQAEVRTVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 297 SKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
D S IIF STC++C +L+++L + + +VALHS Q R +AL +FKS
Sbjct: 240 QTFHDEHADWSIIIFTSTCKTCQILNMMLRKFNFPSVALHSMMKQKARFAALAKFKSSVY 299
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G+A++ VTQ D+ L
Sbjct: 300 RILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRHGIAITLVTQYDIHL 359
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+H IE + K+L++F +E +VL +T+V RR +KL F+EK + K+++L
Sbjct: 360 LHAIEEEIKKKLDDFSVEEAKVLKILTQVNVVRRECEIKLEATDFDEKKEINKRKQL 416
>gi|45361669|ref|NP_989409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
tropicalis]
gi|40787696|gb|AAH64887.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
tropicalis]
Length = 479
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/415 (50%), Positives = 293/415 (70%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL+ W + C +LG+ +P+PVQ +CIP ILEG+D +G A+TGSGKTAAF LPIL +
Sbjct: 4 FSRLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDP+G+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ + + +FLVLDEADR+L+ G F ++L+V+ + +P RQ
Sbjct: 124 VIATPGRLADHIRSSNTFS--IKKIRFLVLDEADRLLEQGCTDFTQDLQVILEAVPAQRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T LQ L ++ NK +F+E+ +TVE L Q+YI +P+ VKD YL+H++ K
Sbjct: 182 TLLFSATLTDTLQELKTIAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVHLIQK 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S +IF +TC++C +L+++L E +VALHS Q QR +AL +FKS I
Sbjct: 242 FQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G+A++ VTQ D+ L+H
Sbjct: 302 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +LEEF+ KE EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQINMKLEEFKVKESEVLKILTQVNVTRRECEIKLECTDFDEKKEINKRKQL 416
>gi|29612573|gb|AAH49396.1| Ddx49-A-prov protein, partial [Xenopus laevis]
Length = 482
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/415 (49%), Positives = 294/415 (70%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL+ W + C +LG+ +P+PVQ +CIP ILEG+D +G A+TGSGKTAAF LPIL +
Sbjct: 7 FSSLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQK 66
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDP+G+ LV+TPTRELAYQ+AEQF+ LG L L+ +++GGMD++ QA L +PH+
Sbjct: 67 LSEDPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPHI 126
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ + + +FLV+DEADR+L+ G F ++L+V+ + +P RQ
Sbjct: 127 VIATPGRLADHIRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQRQ 184
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T LQ L ++ NK +F+E+ +TVE L Q+YI +P+ VKD YL++++ K
Sbjct: 185 TLLFSATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQK 244
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S +IF +TC++C +L+++L E +VALHS Q QR +AL +FKS I
Sbjct: 245 FQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKI 304
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G+A++ VTQ D+ L+H
Sbjct: 305 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLVH 364
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +LEEF+ KE EVL +T+V ARR +KL F+EK + K+++L
Sbjct: 365 AIEGQINMKLEEFKVKENEVLKILTQVNVARRECEIKLECTDFDEKKEINKRKQL 419
>gi|321466431|gb|EFX77426.1| hypothetical protein DAPPUDRAFT_213372 [Daphnia pulex]
Length = 478
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 298/427 (69%), Gaps = 6/427 (1%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
TTT + TF L + EW ++ K LG+ +PTPVQ +CIP IL+G+D +G +TGSGKT A
Sbjct: 3 TTTKAVSTFNSLKIDEWLIKQIKNLGVDKPTPVQINCIPAILDGRDCIGCDRTGSGKTFA 62
Query: 114 FALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
FALPI+ L++DPYG+ ALV+TPTRELAYQ+A+QF+ +G ++LR V+VGGM ++ Q
Sbjct: 63 FALPIVQTLSKDPYGIYALVLTPTRELAYQIADQFQIIGKPINLRMSVIVGGMGMMDQGI 122
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L N PH+VIATPGR+ LE F K+LV+DEADR+L+ F+E+L+++FQ L
Sbjct: 123 ELSNHPHIVIATPGRLADHLESCKTFS--FKTIKYLVMDEADRLLEGNFDEQLQIIFQAL 180
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P+ RQTLLFSAT+T L L E++ NK + + A TVE L Q+YI +P + KD YL+
Sbjct: 181 PEKRQTLLFSATITDTLNKLREVALNKPFMWSAPVETATVEELDQRYILVPADFKDGYLV 240
Query: 294 HVLSKM-EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
HV+ E+ S I+F TCRSC +LS+ L EL +++ LHS SQ +R++ L +F+S
Sbjct: 241 HVVQNFREEKPKGSIIVFTDTCRSCQILSMTLLELGFQSLCLHSMMSQRERIATLTKFRS 300
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
IL+ATDVASRGLDIPTV L++N+++P P++YVHRVGRTARAGRGG +++ +T ND
Sbjct: 301 NTVKILVATDVASRGLDIPTVQLIVNHNVPSNPKEYVHRVGRTARAGRGGFSLTLITPND 360
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+ L+H IE + K+L+EF+ KE+EV+ +T+V +R + L + F EK + K++K
Sbjct: 361 IKLLHAIEGRICKELKEFKIKEKEVVKILTQVAVTKREQEINLDEQDFGEKKRINKRKK- 419
Query: 473 KMLAEKG 479
L EKG
Sbjct: 420 --LIEKG 424
>gi|344283067|ref|XP_003413294.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Loxodonta
africana]
Length = 481
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/415 (51%), Positives = 291/415 (70%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLVLDEADR+L+ G F +L V+ +P RQ
Sbjct: 124 VIATPGRLADHLRSSSTFS--IKKIRFLVLDEADRLLEQGCTDFTTDLEVILGAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQG 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L +L VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKLSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G+A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGMAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+L+EF +E EVL +T+V RR +KL F+E+ + K+++L
Sbjct: 362 AIEEQIKKKLDEFSVEEAEVLRILTQVNVVRRECEIKLEATNFDERKEINKRKQL 416
>gi|444726610|gb|ELW67134.1| putative ATP-dependent RNA helicase DDX49 [Tupaia chinensis]
Length = 479
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/415 (51%), Positives = 289/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L R +FLV+DEADR+L+ G F +L V+ +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKRIRFLVMDEADRLLEQGCTDFTADLEVILAAVPTRRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPERVKDAYLVHLVQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAANFDEKKEVNKRKQL 416
>gi|291231214|ref|XP_002735561.1| PREDICTED: Ddx49-A-prov protein-like [Saccoglossus kowalevskii]
Length = 445
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/417 (51%), Positives = 293/417 (70%), Gaps = 13/417 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL +W V+ CK +G+ +PTP+Q +CIP+ILEG D LG A+TGSGKTAAFALPIL +
Sbjct: 14 FSSLGLNDWLVKQCKAVGITKPTPIQYYCIPQILEGVDCLGCAKTGSGKTAAFALPILQK 73
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L EDPYG+ ALV+TPTRELA+Q+AEQF+ LG + L+ V++GG D++ Q L ++PHV
Sbjct: 74 LCEDPYGIYALVLTPTRELAFQIAEQFRILGKPIGLKDAVIIGGRDVMRQGMDLADKPHV 133
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
VIATPGR L + + FS + KFLVLDEADR+L+ F E+L+V+F LP+ RQT
Sbjct: 134 VIATPGR----LADHINSSNTFSLKKIKFLVLDEADRLLEDTFAEDLQVIFDALPEKRQT 189
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSAT+T L+ L L+ NK +F+++ TVE L Q+Y+ IP V+D YL+H+L K+
Sbjct: 190 LLFSATLTDKLEKLQTLALNKPFFWQSKAEIATVEQLDQKYVLIPAKVRDAYLVHILQKI 249
Query: 300 ----EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
ED S IIF +TC++C L L+L+ L+ LHS Q R+++L +FKSG+
Sbjct: 250 CSETEDY---SMIIFSNTCKNCQSLYLMLKALEFPCTPLHSMIPQRDRIASLAQFKSGRV 306
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
ILLATDVASRGLDIP V LV+N+++P P DYVHRVGRTARAGRGG+A++ +TQ DV L
Sbjct: 307 RILLATDVASRGLDIPIVQLVVNHNVPWSPIDYVHRVGRTARAGRGGMALTLMTQYDVKL 366
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
I IE + +L E+ ++EVL+ + V A+R A M+L + F E+ K++KL
Sbjct: 367 IEAIEKQINTKLTEYPVDDKEVLTILNEVSVAKREAEMRLEEQDFGERKTINKRKKL 423
>gi|348523239|ref|XP_003449131.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Oreochromis
niloticus]
Length = 480
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/415 (49%), Positives = 292/415 (70%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL++W V+ CK+LG+ +PTPVQ +C+P IL+G+D +G A+TGSGKTAAF LP+L +
Sbjct: 4 FSSLGLSDWLVKQCKQLGINKPTPVQENCMPAILQGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQA L N+PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSNQPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
V+ATPGR+ + R +FL+LDEADR+L+ G F ++L V+ + LP RQ
Sbjct: 124 VVATPGRLADHIRSSNTFS--MKRIQFLILDEADRLLEQGCTDFTKDLEVILEILPAKRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T LQ L ++ NK +F+E+ +TVE L Q+YI P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLQELKSIAMNKPFFWESKSETRTVEELDQRYILTPEKVKDAYLVHLIQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
D S IIF +TC+SC +L+++L E + ++LHS Q QR + L +FK+ I
Sbjct: 242 FTDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQKQRFANLAKFKASVYKI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ LIH
Sbjct: 302 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLIH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +L+E+ E+EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 SIEEQIQTKLKEYPVVEKEVLKILTQVNVTRRECEIKLESTDFDEKREINKRKQL 416
>gi|431922034|gb|ELK19207.1| Putative ATP-dependent RNA helicase DDX49 [Pteropus alecto]
Length = 483
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/415 (50%), Positives = 288/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L V+ +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTMDLEVILAAVPAQRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIP V LV+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPAVQLVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQL 416
>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
Length = 456
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/415 (48%), Positives = 293/415 (70%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL++W V+ CK+LG+ +PTPVQ +C+P IL+G+D +G A+TGSGKTAAF LP+L +
Sbjct: 4 FSSLGLSDWLVKQCKQLGIHKPTPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L LR +VVGGMD+++QA L N+PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSNQPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
V+ATPGR+ + S+ +FL++DEADR+L+ G F ++L + LP RQ
Sbjct: 124 VVATPGRLADHIRSSSTFS--MSKIQFLIMDEADRLLEQGCTDFTKDLETIMPALPAKRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T LQ L ++ NK +F+E+ +TV+ L Q+YI P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLQELKNIAMNKPFFWESKSETRTVDELDQRYILTPEKVKDAYLVHLIQT 241
Query: 299 MEDM-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
D S IIF +TC++C +L+++L++ + ++LHS Q QR + L +FK+ I
Sbjct: 242 FTDQHDDWSIIIFTNTCKNCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKFKASVYKI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ L+H
Sbjct: 302 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +L+EF +E+EVL +T+V RR ++L F+EK + K+++L
Sbjct: 362 SIEEQIQTKLKEFPVEEKEVLKILTQVNVTRRECEIRLESTDFDEKKEINKRKQL 416
>gi|410950898|ref|XP_003982139.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Felis catus]
Length = 483
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 288/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FASLGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTADLETILAAVPTRRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E +VL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAKVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQL 416
>gi|311249349|ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Sus scrofa]
Length = 483
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 288/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K++++
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQM 416
>gi|149757285|ref|XP_001503455.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 isoform 1
[Equus caballus]
Length = 483
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/415 (51%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLVLDEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSSTFS--IKKIRFLVLDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + AVALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHQDWSIIIFTNTCKTCQILCMMLRKFGFPAVALHSTMRQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF KE +VL +T+V RR +KL F EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVKEADVLQILTQVNVVRRECEIKLEAANFGEKKEINKRKQL 416
>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein, partial [Xenopus laevis]
Length = 429
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/409 (49%), Positives = 291/409 (71%), Gaps = 6/409 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
GL+ W + C +LG+ +P+PVQ +CIP ILEG+D +G A+TGSGKTAAF LPIL +L+ED
Sbjct: 14 GLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSED 73
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P+G+ LV+TPTRELAYQ+AEQF+ LG L L+ +++GGMD++ QA L +PH+VIAT
Sbjct: 74 PFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPHIVIAT 133
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQTLLF 242
PGR+ + + +FLV+DEADR+L+ G F ++L+V+ + +P RQTLLF
Sbjct: 134 PGRLADHIRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQRQTLLF 191
Query: 243 SATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED- 301
SAT+T LQ L ++ NK +F+E+ +TVE L Q+YI +P+ VKD YL++++ K +D
Sbjct: 192 SATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQKFQDE 251
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
S +IF +TC++C +L+++L E +VALHS Q QR +AL +FKS IL+AT
Sbjct: 252 HEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKILIAT 311
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G+A++ VTQ D+ L+H IE
Sbjct: 312 DVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLVHAIEG 371
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
+ +LEEF+ KE EVL +T+V ARR +KL F+EK ++++++
Sbjct: 372 QINMKLEEFKVKENEVLKILTQVNVARRECEIKLECTDFDEKKRDKQEE 420
>gi|38198641|ref|NP_938179.1| probable ATP-dependent RNA helicase DDX49 [Danio rerio]
gi|28839770|gb|AAH47834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
Length = 468
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/437 (48%), Positives = 298/437 (68%), Gaps = 9/437 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+EW +Q CK++G+ RPT VQ CIP IL+G+D +G A+TGSGKTAAF LP+L
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L+EDPYGV LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQ L +PH
Sbjct: 63 KLSEDPYGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPH 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNR 237
VV+ATPGR+ + I +R +FL++DEADR+L+ G F ++L V+ +P R
Sbjct: 123 VVVATPGRLADHIRSSDTIN--LNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKR 180
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSAT+T LQ L ++ N+ +F+E +TVE L Q++I P+ VKD YL+H++
Sbjct: 181 QTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLIQ 240
Query: 298 KMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+D S IIF +TC+SC +L+++L E + ++LHS Q QR + L +FKS
Sbjct: 241 TFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVFK 300
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ LI
Sbjct: 301 ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLI 360
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
+ IE +L+EF +E+EVL +T+V RR +KL F+EK K K++++ +
Sbjct: 361 NAIEEQNQTKLKEFPIEEKEVLKILTQVNVTRRQCEIKLESTDFDEKKKINKRKQMILDG 420
Query: 477 EKGSLKKRSEKRKKSGE 493
+ L+ EKRK E
Sbjct: 421 KDPDLE---EKRKNELE 434
>gi|449667317|ref|XP_002168355.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Hydra
magnipapillata]
Length = 429
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/427 (48%), Positives = 290/427 (67%), Gaps = 7/427 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL EW + C E+G+ +PT +Q CIP+IL G+D +G A+TGSGKTAAFALPI+ +
Sbjct: 5 FTDLGLHEWLNKQCLEMGISKPTEIQVSCIPEILSGRDCIGSAKTGSGKTAAFALPIIQK 64
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ AL++TPTRELA Q+A+QFKALG + L V++GG+D++ Q L N+PHV
Sbjct: 65 LSEDPYGIFALILTPTRELAIQIADQFKALGKSIGLNDAVIIGGLDMVKQGMELSNQPHV 124
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
VIATPGR+ + ++ KFLVLDEADR+L+ FE +L V+F + K RQTLL
Sbjct: 125 VIATPGRLASHITSGTKFS--LNKIKFLVLDEADRLLEKSFENDLEVIFDNIAKKRQTLL 182
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSAT+T + L E++ N + YE F TV L Q+Y+ IP VKD YL+H+L +
Sbjct: 183 FSATITDAINHLKEVAHN-PFCYEVKSDFATVTELDQRYLLIPSQVKDCYLVHLLQNFSE 241
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+S IIF TCRSC ++S +L +++ + LHS SQ +RLS+L RF+SG IL+AT
Sbjct: 242 ---KSVIIFTQTCRSCQVISFMLRKVEFKCAGLHSVMSQRERLSSLGRFRSGHVKILVAT 298
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLDIP V LV+NY++P P+DYVHRVGRTARAGRGG++++ +TQ D+D + IE
Sbjct: 299 DVASRGLDIPLVQLVINYNVPASPKDYVHRVGRTARAGRGGMSLTLLTQFDIDRLKAIET 358
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSL 481
+G +++EFE E + + + + RR ++L D F EK K+ K+KL +L
Sbjct: 359 FIGLKMKEFETNEDDAVKLLKPISIIRREVEIRLNDANFGEK-KKNNKRKLGLLNSNSKP 417
Query: 482 KKRSEKR 488
K ++K+
Sbjct: 418 KLFNKKK 424
>gi|395847961|ref|XP_003796632.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Otolemur
garnettii]
Length = 483
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGHDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKECIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L V+ +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEVILSAVPTRRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHKDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVDEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|426228752|ref|XP_004008460.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 isoform 1
[Ovis aries]
Length = 483
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 288/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C+++G+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQMGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ +VVGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIVVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L V+ +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--MKKIRFLVMDEADRLLEQGCTDFTVDLEVILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E +VL +T+V RR +KL F+EK + K++++
Sbjct: 362 AIEEQIKKKLEEFPVEEAQVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQM 416
>gi|348558702|ref|XP_003465155.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Cavia
porcellus]
Length = 477
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/431 (49%), Positives = 294/431 (68%), Gaps = 8/431 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFH--IKKIRFLVMDEADRLLEQGCTDFTADLETILAAVPAQRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLVQS 241
Query: 299 MEDMG-IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R SAL +FKS I
Sbjct: 242 FQDKHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFSALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IE + KQLEE +E EVL +T+V RR +KL F+EK + K+++L +
Sbjct: 362 AIEEQIKKQLEELPVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGR 421
Query: 478 KGSL--KKRSE 486
L K+R+E
Sbjct: 422 DPDLEAKRRAE 432
>gi|297704172|ref|XP_002828993.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Pongo abelii]
Length = 483
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 288/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P +RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAHRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|31542656|ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens]
gi|350538363|ref|NP_001233517.1| probable ATP-dependent RNA helicase DDX49 [Pan troglodytes]
gi|397493813|ref|XP_003817790.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Pan paniscus]
gi|74753527|sp|Q9Y6V7.1|DDX49_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
Full=DEAD box protein 49
gi|2443870|gb|AAB81544.1| R27090_2 [Homo sapiens]
gi|12803677|gb|AAH02674.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo sapiens]
gi|119605165|gb|EAW84759.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, isoform CRA_b [Homo
sapiens]
gi|312152524|gb|ADQ32774.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [synthetic construct]
gi|343960719|dbj|BAK61949.1| probable ATP-dependent RNA helicase DDX49 [Pan troglodytes]
gi|410219928|gb|JAA07183.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Pan troglodytes]
gi|410255310|gb|JAA15622.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Pan troglodytes]
gi|410295734|gb|JAA26467.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Pan troglodytes]
gi|410333447|gb|JAA35670.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Pan troglodytes]
Length = 483
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|49903707|gb|AAH75762.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
Length = 468
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/437 (48%), Positives = 298/437 (68%), Gaps = 9/437 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+EW +Q CK++G+ RPT VQ CIP IL+G+D +G A+TGSGKTAAF LP+L
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L+EDPYGV LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQ L +PH
Sbjct: 63 KLSEDPYGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPH 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNR 237
VV+ATPGR+ + I +R +FL++DEADR+L+ G F ++L V+ +P R
Sbjct: 123 VVVATPGRLADHIRSSDTIN--LNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKR 180
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSAT+T LQ L ++ N+ +F+E +TVE L Q++I P+ VKD YL+H++
Sbjct: 181 QTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLIQ 240
Query: 298 KMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+D S IIF +TC+SC +L+++L E + ++LHS Q QR + L +FKS
Sbjct: 241 TFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLVKFKSNVFK 300
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ LI
Sbjct: 301 ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLI 360
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
+ IE +L+EF +E+EVL +T+V RR +KL F+EK K K++++ +
Sbjct: 361 NAIEEQNQTKLKEFPIEEKEVLKILTQVNVTRRQCEIKLESTDFDEKKKINKRKQMILDG 420
Query: 477 EKGSLKKRSEKRKKSGE 493
+ L+ EKRK E
Sbjct: 421 KDPDLE---EKRKNELE 434
>gi|126323567|ref|XP_001370574.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Monodelphis
domestica]
Length = 491
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/415 (49%), Positives = 288/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGLA W V C++LG++ PTPVQ +C+P ILEG+D +G A+TGSGKTAAF LPIL +
Sbjct: 4 FAKLGLASWLVAQCRQLGLKHPTPVQQNCVPAILEGRDCMGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDP+G+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F ++L V+F P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFN--IKKIRFLVMDEADRLLEQGCTDFTKDLEVIFDAAPAQRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L ++ NK +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKVLQGIATNKPFFWEAPAEVRTVEQLDQRYLLVPEKVKDAYLVHLIQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF STC++C +L+++L + +VALHS Q R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTSTCKTCQVLNMMLRRFNFPSVALHSMMKQKARFAALAKFKSSVYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G+A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRDGIAITLVTQYDIHLLH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +L++F +E VL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEEIKMKLKDFSVEEATVLKILTQVNVVRRECEIKLEATDFDEKKEINKRKQL 416
>gi|156389591|ref|XP_001635074.1| predicted protein [Nematostella vectensis]
gi|156222164|gb|EDO43011.1| predicted protein [Nematostella vectensis]
Length = 436
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/405 (49%), Positives = 288/405 (71%), Gaps = 4/405 (0%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
+T +FAGLGL +W V C +G+++PT +Q +C+P IL+G+D +G A+TGSGKTAAFALP
Sbjct: 5 TTCSFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALP 64
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL +L +DPYG+ A+V+TPTRELA+Q+A+QFK LG + L+ V+VGG+D++ QA SL N
Sbjct: 65 ILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLAN 124
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+PHVVIATPGR+ ++ + + +FLVLDEADR+LD F ++L+V+F +P+ R
Sbjct: 125 KPHVVIATPGRLADHIKSTDTLN--LKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKR 182
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSAT+T + L ++S ++ + YE TV L Q+Y+ P +V+D YL+H+L
Sbjct: 183 QTLLFSATLTDTMGELQKMSGSQPFSYEVQSDIATVAELDQRYLLTPAHVRDCYLVHLLR 242
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +D +S I+F TC++C +L + +L V LHS SQ +RL+AL RFKSG I
Sbjct: 243 ENDDN--QSVIVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKI 300
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIP V+LV+N +IP P+DY+HRVGRTARAGRGG+A+S VTQ D+D +
Sbjct: 301 LVATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVK 360
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
+IE + +L E+ E+EVL+ + V ARR A +++ D E
Sbjct: 361 KIEEKINTKLTEYTTSEKEVLTLLKAVLVARREAELRVRDSDILE 405
>gi|440904005|gb|ELR54578.1| Putative ATP-dependent RNA helicase DDX49, partial [Bos grunniens
mutus]
Length = 486
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/415 (49%), Positives = 289/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C+++G+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 7 FAELGLSSWLVEQCRQMGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 66
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 67 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 126
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L V+ +P RQ
Sbjct: 127 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEVILAAVPARRQ 184
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 185 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 244
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + +ALHS Q +R +AL +FKS I
Sbjct: 245 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTMALHSMMKQKERFAALAKFKSSIYRI 304
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 305 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 364
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E +VL +T+V RR +KL F+EK + K++++
Sbjct: 365 AIEEQIKKKLEEFPVEEAQVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQM 419
>gi|57101724|ref|XP_541930.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 isoform 1
[Canis lupus familiaris]
Length = 488
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + KQLEE +E +VL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKQLEELSVEEAKVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQL 416
>gi|62898149|dbj|BAD97014.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 variant [Homo sapiens]
Length = 483
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPVILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|403303461|ref|XP_003942345.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Saimiri
boliviensis boliviensis]
Length = 483
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAQLGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGG+D++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGLDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLETILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSVIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|355703340|gb|EHH29831.1| Putative ATP-dependent RNA helicase DDX49 [Macaca mulatta]
Length = 483
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSVYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 TIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|380786067|gb|AFE64909.1| putative ATP-dependent RNA helicase DDX49 [Macaca mulatta]
Length = 483
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSVYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|355755632|gb|EHH59379.1| Putative ATP-dependent RNA helicase DDX49 [Macaca fascicularis]
Length = 483
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|402904855|ref|XP_003915254.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Papio anubis]
Length = 483
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVAQCQQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|281343550|gb|EFB19134.1| hypothetical protein PANDA_000569 [Ailuropoda melanoleuca]
Length = 457
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/415 (50%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEE +E +VL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEELSVEEAKVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQL 416
>gi|301753949|ref|XP_002912858.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Ailuropoda melanoleuca]
Length = 477
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/415 (50%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEE +E +VL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEELSVEEAKVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQL 416
>gi|156549811|ref|XP_001606554.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Nasonia
vitripennis]
Length = 456
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/414 (48%), Positives = 291/414 (70%), Gaps = 5/414 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L ++ W + K +G+++PTP+Q +CIP IL GKD +G A+TGSGKT AFALPIL +
Sbjct: 4 FTDLNISSWIIDQLKLIGVKKPTPIQQNCIPAILSGKDCIGCAKTGSGKTLAFALPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ ALV+TPTRELA+Q+ +QF A+G ++L+ +VGGMD++ Q + L PH+
Sbjct: 64 LSEDPYGIFALVLTPTRELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQGQELARHPHI 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ATPGR+ LE +R KFLVLDEADR+L F+E+L V+F+ LPKNRQ+LL
Sbjct: 124 VVATPGRLADHLESCNTFS--LARIKFLVLDEADRLLGGHFDEQLSVIFKALPKNRQSLL 181
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
FSAT+T L + ++S + + +E+ + G TV+ L Q+Y+ PK+V+D +L+ V+
Sbjct: 182 FSATITDALDKVKQVSTKEWFIWESTDDSGVATVKELDQRYVLCPKDVRDAFLVEVIRTF 241
Query: 300 E-DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
D S +IF TC++C LLS+ L E+ + VALH+ Q +RLSAL +FKS IL
Sbjct: 242 RADNENGSIMIFTDTCKNCQLLSMTLNEVGFDNVALHAMIKQKERLSALSKFKSNHTKIL 301
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP V LV+N++IP P++Y+HRVGRTARAGRGG+AVS VT D++L+H
Sbjct: 302 IATDVAARGLDIPIVALVINHNIPNIPKEYIHRVGRTARAGRGGMAVSLVTPYDINLLHA 361
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE +G +L EF+ +++E+++ T++ +R A +KL + F EK K++KL
Sbjct: 362 IEETIGTKLTEFKVEDKEIVNIFTQISVTKREAEIKLDETDFYEKKMINKRKKL 415
>gi|149036001|gb|EDL90667.1| rCG38846 [Rattus norvegicus]
Length = 497
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/446 (47%), Positives = 299/446 (67%), Gaps = 17/446 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA L L+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLVLDEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFN--MKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D + S IIF +TC++C +L ++L + + VALHS Q +R +AL RFKS I
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL----- 472
IE + +QL E +E +VL +T+V RR +KL F+EK + K++++
Sbjct: 362 AIEEEIKQQLAELAVEEAQVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQMILEGK 421
Query: 473 ------KMLAEKGSLKKRSEKRKKSG 492
K AE +K+++ + K+ G
Sbjct: 422 DPDLEAKRKAELAKIKQQNRRFKEKG 447
>gi|109124055|ref|XP_001115617.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Macaca
mulatta]
Length = 527
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|148696858|gb|EDL28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
Length = 545
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/450 (47%), Positives = 300/450 (66%), Gaps = 17/450 (3%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S FA +GL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LP
Sbjct: 4 SMAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLP 63
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL +L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L
Sbjct: 64 ILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSR 123
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLP 234
+PHVVIATPGR+ L + +FLV+DEADR+L+ G F +L + +P
Sbjct: 124 KPHVVIATPGRLADHLRSSNTFN--MKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVP 181
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H
Sbjct: 182 ARRQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVH 241
Query: 295 VLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
++ +D + S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS
Sbjct: 242 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 301
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
IL+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+
Sbjct: 302 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 361
Query: 414 DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL- 472
L+H IE + +QL E +E EVL +T+V RR +KL F+EK + K++++
Sbjct: 362 HLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQMI 421
Query: 473 ----------KMLAEKGSLKKRSEKRKKSG 492
K AE +K+++ + K+ G
Sbjct: 422 LEGKDPDLEAKRKAELAKIKQQNRRFKEKG 451
>gi|158257264|dbj|BAF84605.1| unnamed protein product [Homo sapiens]
Length = 483
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++V GMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVDGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|410921858|ref|XP_003974400.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Takifugu
rubripes]
Length = 477
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/415 (47%), Positives = 291/415 (70%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL++W ++ CK+LG+++ TPVQ +C+P IL+G+D +G A+TGSGKTAAF LP+L +
Sbjct: 4 FSSLGLSDWLIKQCKQLGIQKATPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQA L N+PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSNQPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
V+ATPGR+ + ++ +FL++DEADR+L+ G F ++L + +P RQ
Sbjct: 124 VVATPGRLADHIRSSSTFS--LAKIQFLIMDEADRLLEQGCTDFTKDLETILTAVPAKRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T LQ L ++ NK +F+E+ +TVE L Q+YI P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLQELKHIAMNKPFFWESKSETRTVEELDQRYILTPEKVKDAYLVHLIQT 241
Query: 299 MEDM-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
D S IIF STC+ C +L+++L++ ++LHS Q QR + L +FK+ I
Sbjct: 242 FTDQHDDWSIIIFTSTCKDCQILTMMLQKFHFPTISLHSMMKQKQRFANLAKFKASVYKI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ L+H
Sbjct: 302 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +L+EF +E+EVL +T+V RR ++L F+EK + K+++L
Sbjct: 362 SIEEQIQTKLKEFPVEEKEVLKILTQVNVTRRECEIRLESTDFDEKKEINKRKQL 416
>gi|332253514|ref|XP_003275885.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Nomascus
leucogenys]
Length = 483
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQC 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E +VL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAKVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>gi|169234830|ref|NP_001108495.1| probable ATP-dependent RNA helicase DDX49 [Rattus norvegicus]
gi|165971701|gb|AAI58856.1| Ddx49 protein [Rattus norvegicus]
Length = 480
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/415 (49%), Positives = 286/415 (68%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA L L+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLVLDEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFN--MKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA + VE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEAQATVRMVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D + S IIF +TC++C +L ++L + + VALHS Q +R +AL RFKS I
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +QL E +E +VL +T+V RR +KL F+EK + K++++
Sbjct: 362 AIEEEIKQQLAELAVEEAQVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQM 416
>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
Length = 611
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/415 (49%), Positives = 285/415 (68%), Gaps = 7/415 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LGL +W V+ C+ +G++ PT +Q + I +L G++V+G A+TGSGKTAAFALPILH
Sbjct: 179 TFAALGLKQWLVKQCEAMGLKHPTDIQVNTIKHVLAGRNVIGCAKTGSGKTAAFALPILH 238
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL++DPYG A+V+TPTRELA+Q+AEQF+ALG G++LR VVVGG+D++ Q+ L RPH
Sbjct: 239 RLSDDPYGPFAVVLTPTRELAFQIAEQFRALGKGINLREAVVVGGVDMMQQSLVLAKRPH 298
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL-RVVFQCLPKNRQT 239
V+IATPGR+ L + + +R +FLVLDEADR+L+ GF +L R++ RQT
Sbjct: 299 VIIATPGRLADHLNSNSQLS--LARARFLVLDEADRLLEEGFSPDLNRILAAASNPQRQT 356
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSAT+T ++ L +S + YE TV TL Q+++ P VKD YL ++L +
Sbjct: 357 LLFSATITKNIANLESMSMSNVVHYETKSSVATVTTLDQRFVITPAKVKDCYLSYLLGQH 416
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
ED +S I+F S+CR+C ++ +++ L VALHS SQS RL +L +FKS IL+
Sbjct: 417 ED---KSIIVFTSSCRNCETITRMIKALGFRCVALHSEMSQSMRLGSLAKFKSSIVNILI 473
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIPTV LV+N D+PR DYVHRVGRTARAGRGG+AV+FVTQ D++LI I
Sbjct: 474 ATDVASRGLDIPTVKLVINNDVPRTSTDYVHRVGRTARAGRGGMAVTFVTQYDIELIQHI 533
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
E+ + +L E L ++ V A+R A M++ ++ F E+ + R +K M
Sbjct: 534 ESKIKVKLSALTMDEDAALVNLNDVTTAKRTAIMEMAEENFGER-RRRNLEKQDM 587
>gi|67972435|ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus]
gi|76364172|sp|Q4FZF3.1|DDX49_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
Full=DEAD box protein 49
gi|71051022|gb|AAH99554.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
Length = 480
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/415 (49%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA +GL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFN--MKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D + S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +QL E +E EVL +T+V RR +KL F+EK + K++++
Sbjct: 362 AIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQM 416
>gi|270005640|gb|EFA02088.1| hypothetical protein TcasGA2_TC007723 [Tribolium castaneum]
Length = 447
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/414 (48%), Positives = 281/414 (67%), Gaps = 2/414 (0%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L W ++ C +G+R PTP+QT+CIP IL G+D +G A+TGSGKT AFALPIL
Sbjct: 5 SFDKLQLNPWIIRQCATIGVRSPTPIQTNCIPPILAGRDCIGAAKTGSGKTLAFALPILQ 64
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L EDPYG+ AL++TPTRELA+Q+A+QF +G ++LR V+VGGMD++ Q K L +PH
Sbjct: 65 KLCEDPYGIFALILTPTRELAFQIADQFAVIGKVMNLRHCVIVGGMDMVVQGKDLARKPH 124
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ATPGR+ LE F++ +FLVLDEADR+L F+E+++ +FQ LPK RQ L
Sbjct: 125 IVVATPGRLADHLESCNTFN--FNKLRFLVLDEADRLLGGHFDEQIKTIFQALPKERQNL 182
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
FSAT+T L+ L +++ +FYEA TVE L+Q Y+ PK+VKD YL+ +
Sbjct: 183 FFSATITDTLEKLKDVTGKDVFFYEAPAEVATVEQLEQNYVLCPKDVKDAYLVETIRTYR 242
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ +IF +TC++C +LS+ L E+ E VALH+ Q QRL+AL +FKS ILLA
Sbjct: 243 ATNDGNILIFTNTCKNCQVLSMTLNEVGFENVALHAMMKQQQRLAALAKFKSNTIKILLA 302
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIPTV LV+N++IP+ P++Y+HRVGRTARAGR G A+S VT D+ L+ IE
Sbjct: 303 TDVASRGLDIPTVQLVINHNIPKIPKEYIHRVGRTARAGRNGKAISLVTPYDIKLLQAIE 362
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
+ +L EF+ + EV T++ + A +KL + F EK K++K M
Sbjct: 363 QHINTKLTEFKLDDSEVGKIFTQISVTKSEAYIKLDEQDFYEKKMINKRKKWMM 416
>gi|255070425|ref|XP_002507294.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
gi|226522569|gb|ACO68552.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
Length = 484
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/448 (45%), Positives = 293/448 (65%), Gaps = 6/448 (1%)
Query: 32 EPESKNAKTTQLEK---FTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
+P +K +T+++ + F + + S F LGL W + +G+ TPVQ
Sbjct: 37 QPRTKTFETSKIGEVVGFPSQEIVSHEVVEQTGFRSLGLNSWLCENITSMGIATATPVQR 96
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
CIP IL G+DV+G+AQTG+GKTAAFALPIL L +PYG+ L +TPTRELA Q++EQF
Sbjct: 97 GCIPAILAGRDVIGVAQTGTGKTAAFALPILQILGREPYGIFCLCLTPTRELASQISEQF 156
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
A +G+ LRCE V GG ++ TQAK+LM RPH+ +ATPGR+ + F +
Sbjct: 157 IAFSAGMTLRCETVFGGENIRTQAKALMLRPHIAVATPGRLMDHFLHCSAVAKCFENVRC 216
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLPK-NRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267
LVLDEADR+LD GFE EL+ + LP NRQTL+FSAT+T + + EL+ KA +EA
Sbjct: 217 LVLDEADRLLDPGFEAELQAIMHNLPSANRQTLMFSATITKSISAVQELALGKALLFEAL 276
Query: 268 EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL 327
+ + K++Y FI VK+VYL+H+L + G RS I+F T R C +L +L L
Sbjct: 277 KDTQLAGRCKEEYCFIAPRVKEVYLVHILKRAPTWGTRSMIVFAGTVRKCQMLKEILSVL 336
Query: 328 DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387
VALH+ K Q++R ++L RFKSG+ I++ATD+ASRGLDIPTVD+V+NYD+P PRD
Sbjct: 337 GINCVALHAAKKQARRHASLSRFKSGEIQIMIATDIASRGLDIPTVDMVVNYDVPLIPRD 396
Query: 388 YVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYK 446
Y+HR+GRTARAGR G A++ VTQ+D+ L+H+IE + ++L E + E+ +L D+ +V+
Sbjct: 397 YIHRIGRTARAGRVGRAITLVTQHDISLVHQIEQLTCRKLVELSKLSEEAILKDMAQVFA 456
Query: 447 ARRVATMKL-MDDGFEEKAKERKKQKLK 473
ARR+A + + GF E ++++ + K
Sbjct: 457 ARRIANLNMGAAGGFNEILRQKRSKCTK 484
>gi|328789449|ref|XP_003251275.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Apis
mellifera]
Length = 452
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/416 (47%), Positives = 290/416 (69%), Gaps = 5/416 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA L L+ W VQ C +G++ PTP+Q +CIP+IL G D +G A+TGSGKT AFALPIL
Sbjct: 1 MTFAELNLSSWLVQQCTFMGLKYPTPIQQNCIPRILAGTDCIGCAKTGSGKTLAFALPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+EDPYG+ ALV+TPTRELA+Q+A+QF A+G + L+ ++VGGMD++ Q L P
Sbjct: 61 QKLSEDPYGIFALVLTPTRELAFQIADQFSAIGKSIGLKKCIIVGGMDMVVQGLELSKHP 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+V+ATPGR+ LE + KFLVLDEADR+L+ F+++L+ +F+ LPK +Q
Sbjct: 121 HIVVATPGRLADHLESCNTFS--LKQIKFLVLDEADRLLEGYFDDQLKTIFEALPKQKQI 178
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSATMT L + + +NKA+ +E+ + G TV+ L Q Y+ P++++D +L+ V+
Sbjct: 179 LLFSATMTDTLHKVKHIVSNKAFIWESKDESGIATVKELNQHYVLCPRDIRDSFLVEVIR 238
Query: 298 KMEDMGIR-SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
S IIF TC+ C +LS+ L ++ + VALHS Q RL+AL +FKS
Sbjct: 239 TFRANNKNGSIIIFTDTCKHCQILSMTLNDVGFKNVALHSMVKQKDRLAALVQFKSNHIK 298
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV+L++N+ IP P++Y+HRVGRTARAG+ G+A++ +T +D+ L+
Sbjct: 299 ILIATDVAARGLDIPTVELIINHIIPNVPKEYIHRVGRTARAGKSGMAITLITPHDIKLL 358
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
H IE +G +L E++ ++E+++ +T++ A+R A MKL + F EK K++KL
Sbjct: 359 HAIENTIGTKLTEYKINDKEIITILTQISVAKREAEMKLDETNFYEKKIINKRKKL 414
>gi|432854582|ref|XP_004067972.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Oryzias
latipes]
Length = 469
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/417 (49%), Positives = 288/417 (69%), Gaps = 10/417 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W V+ CK+LG+ +PTPVQ +C+P ILEG+D LG A+TGSGKTAAF LP+L +
Sbjct: 4 FHSLGLSDWLVKQCKQLGIDKPTPVQENCVPAILEGRDCLGCAKTGSGKTAAFVLPVLQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ +VVGGMD++TQA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIVVGGMDMVTQALELSKQPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVG---FEEELRVVFQCLPKN 236
V+ATPGR L + FS + KFL+LDEADR+L+ G F ++L + LP
Sbjct: 124 VVATPGR----LADHVRSSNTFSMRKIKFLILDEADRLLEQGCTDFTKDLEEILGTLPAK 179
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTLLFSAT+T LQ L ++ NK +F+E+ +TVE L Q+YI P+ VKD YL+H++
Sbjct: 180 RQTLLFSATLTDTLQELKSIAMNKPFFWESTSETRTVEELDQRYILTPEKVKDAYLVHLI 239
Query: 297 SKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
D S IIF +TC++C +L+++L E + ++LHS Q QR + L +FK+
Sbjct: 240 QTFTDKHDDWSIIIFTNTCKNCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKASVY 299
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ L
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+H IE +L E+ +E+EV +T+V RR ++L F+EK + K+++L
Sbjct: 360 VHSIEEQTKTKLTEYPVEEKEVHKILTQVNVTRRECEIRLESTDFDEKKEINKRKQL 416
>gi|340376506|ref|XP_003386773.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Amphimedon queenslandica]
Length = 441
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/423 (48%), Positives = 292/423 (69%), Gaps = 2/423 (0%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
+ TF+ LGL+ W V+ C+ LG + TPVQ +CIP I+EG+D +G A+TGSGKTAAFALPI
Sbjct: 4 SCTFSSLGLSSWLVRQCEGLGFKEATPVQKNCIPPIMEGRDCIGSAKTGSGKTAAFALPI 63
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
LH L+ DPYG+ ALV+TPTRELAYQ+++QF LG + ++ EV+VGG+D++ QA +L R
Sbjct: 64 LHSLSRDPYGIYALVLTPTRELAYQISDQFCVLGKHIGVKSEVIVGGVDMMVQALALSRR 123
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ L+ + + K+LVLDEADR+L+ FE++L V+F+ LP+ RQ
Sbjct: 124 PHIVVATPGRLADHLQSTDTV--FMEKIKYLVLDEADRLLEKCFEDDLSVIFERLPEKRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L L ELS + +EA + TV++L Q Y+ IP VKD YL+ +L +
Sbjct: 182 TLLFSATLTDSLNRLKELSTTPPFCWEAPKEISTVDSLDQHYVLIPAQVKDCYLITLLDQ 241
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
D+ ++ I+F TCR+C + LLL++L+ V LHS +Q +RLS+L FKS Q IL
Sbjct: 242 FHDVDKKTIILFTDTCRNCEIYGLLLKQLEFPNVTLHSLMTQRRRLSSLAMFKSRQVRIL 301
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP V +V+N +IP +DY+HRVGRTARAG GG A+S +TQ DV +
Sbjct: 302 VATDVASRGLDIPLVGVVINLNIPASSKDYIHRVGRTARAGHGGQAISLMTQYDVTRVKN 361
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEK 478
IE + +L E+ +E L +++ V A+R +KL + F +K + ++ ++L +
Sbjct: 362 IENDIKTELVEYPIEEDIALKNLSVVTMAKREVDIKLSETDFGKKRRTNILKRKQLLMKV 421
Query: 479 GSL 481
G+L
Sbjct: 422 GAL 424
>gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
[Ciona intestinalis]
Length = 452
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/438 (45%), Positives = 291/438 (66%), Gaps = 10/438 (2%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+S FA LGL EW +Q LG +PTP+Q +CIP IL+GKD G ++TGSGKTAAFAL
Sbjct: 2 ESEGNFADLGLNEWIIQHLGNLGFNKPTPIQYNCIPPILQGKDCFGCSKTGSGKTAAFAL 61
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
P+L +L+EDPYG+ LV+TPTRELAYQ++EQF +G +++R V+VGGMD++ QA L
Sbjct: 62 PVLQKLSEDPYGIFCLVLTPTRELAYQISEQFTLIGKPINIRTSVIVGGMDIIQQAYELQ 121
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV---GFEEELRVVFQCL 233
+PH+VIATPGR+ LL + + KFLVLDEADR+LD F +L ++F L
Sbjct: 122 KKPHIVIATPGRLADLLRSNEN------NVKFLVLDEADRLLDKLDGDFTNDLNLIFSSL 175
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
PK RQTLLFSAT+T L + ELS +F+++ TV+ L Q+YI +P++++D YL+
Sbjct: 176 PKERQTLLFSATLTDTLNEVKELSTKSPFFWQSDNKVSTVDNLDQRYILLPEHIRDGYLV 235
Query: 294 HVLSK-MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
++ +E RS +IF TC++C +L +LL++ + V LHS Q +RL+AL RFKS
Sbjct: 236 YICKDLLEKQPTRSIMIFTKTCKNCQVLGMLLQKAGFQCVVLHSLMKQRERLTALSRFKS 295
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
+L+ATDVA+RGLDIP V +V+N+++P ++Y+HRVGRTARAGR G++++ VTQ D
Sbjct: 296 SNTRLLVATDVAARGLDIPVVQVVINHNVPGLAKNYIHRVGRTARAGRSGISITLVTQFD 355
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+ + IE + +L+E+E E+EVL +T+V +R L + F EK K K + L
Sbjct: 356 IHRVQSIEEHINTKLKEYEVDEREVLKILTKVNVMKRETEWVLEEQKFGEKKKTNKDKAL 415
Query: 473 KMLAEKGSLKKRSEKRKK 490
+ + + + KR+K
Sbjct: 416 ILQGKDPITEAKKRKREK 433
>gi|383851888|ref|XP_003701463.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Megachile rotundata]
Length = 449
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/416 (46%), Positives = 287/416 (68%), Gaps = 5/416 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L W V C +G++ PTP+Q +CIP+IL G+D +G A+TGSGKT AFALPIL
Sbjct: 1 MTFTTLNLNSWLVDQCNFMGLKNPTPIQQNCIPRILAGEDCIGCAKTGSGKTLAFALPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+EDPYG+ AL++TPTRELA+Q+A+QF A+G + L+ V+VGGMD++ Q L P
Sbjct: 61 QKLSEDPYGIFALILTPTRELAFQIADQFSAIGKSIGLKKCVIVGGMDMVIQGLELSKHP 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+V+ATPGR+ L + KFLVLDEADR+L+ F+++L+V+F LPK +Q
Sbjct: 121 HIVVATPGRLADHLTSCNTFS--LKKIKFLVLDEADRLLEGHFDDQLKVIFDALPKQKQM 178
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSATMT L + ++ + KA+ +E+ E G TV L Q+Y+ P +V+D +L+ V+
Sbjct: 179 LLFSATMTDALSKVKDIVSKKAFIWESTEDSGVATVRQLDQRYVLCPSDVRDSFLVEVIR 238
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+I IF TC++C +LS++L ++ + VALH+ Q RL+AL +FKS
Sbjct: 239 TFRTTNENGSIMIFTDTCKNCQVLSMMLSDVGFKNVALHAMIKQKDRLAALSQFKSNHIQ 298
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV+LV+N+ +P P++Y+HRVGRTARAG+GG+A++ + ND+ L+
Sbjct: 299 ILIATDVAARGLDIPTVELVVNHIVPNVPKEYIHRVGRTARAGKGGMAITLIAPNDIKLL 358
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
H +E +G +L E++ + E++ +T++ A+R A MKL + F EK + K++KL
Sbjct: 359 HAVEEAIGTKLTEYKVNDTEIIKILTQISVAKREAEMKLDETDFYEKKRINKRKKL 414
>gi|390332079|ref|XP_781784.3| PREDICTED: probable ATP-dependent RNA helicase DDX49
[Strongylocentrotus purpuratus]
Length = 478
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/414 (47%), Positives = 284/414 (68%), Gaps = 3/414 (0%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+GLGL +W V+ C+ +G+++PTP+Q +CIP IL+G D +G A+TGSGKTAAFALPIL
Sbjct: 12 LSFSGLGLHDWLVRQCEAVGIKQPTPIQHNCIPPILKGSDCIGCAKTGSGKTAAFALPIL 71
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+EDPYGV LV+TPTREL Q+AEQF+ LG + LR VV+GG+D++ Q + L +P
Sbjct: 72 QKLSEDPYGVFGLVVTPTRELGIQIAEQFRVLGKPIGLRVTVVIGGIDMVEQGRELSKKP 131
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+VIATPGR+ ++ KFLVLDEADR+L+ F +L V+F LP RQT
Sbjct: 132 HIVIATPGRLADHIKSTSTFD--LHAIKFLVLDEADRLLEGNFGPDLEVIFDFLPAKRQT 189
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSAT+T ++ L ++S +K + + + TVE L Q+Y+ +P VKD YLM+++S+
Sbjct: 190 LLFSATITDTMKELQKMSMDKPFSWHSKAPVATVEQLDQRYVLMPAQVKDAYLMYIISEF 249
Query: 300 -EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E S IIF STC+ CH+LS++L L + LHS Q R+++L FKS IL
Sbjct: 250 TEKNRDHSLIIFTSTCKYCHVLSIMLRNLGMQCATLHSLVKQKTRIASLAMFKSNHVRIL 309
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATD+ASRGLDIP V +++N+++P P+DY+HRVGRTARAGRGG++++ VTQ DV L+
Sbjct: 310 VATDLASRGLDIPMVQMIINHNVPTSPKDYIHRVGRTARAGRGGMSITMVTQFDVKLVQA 369
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + ++ E++ E+ VL + V A+ A MKL + F E+ K+++L
Sbjct: 370 IEKTINTKMTEYKVPEKNVLPILNEVALAKSKAEMKLEELDFGERRAIHKRKQL 423
>gi|428181028|gb|EKX49893.1| hypothetical protein GUITHDRAFT_159399 [Guillardia theta CCMP2712]
Length = 413
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/408 (50%), Positives = 285/408 (69%), Gaps = 4/408 (0%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LG+ W V C +G++RPT VQ +CIP L G+++L A+TGSGKTAAFALPI+ +
Sbjct: 9 FSSLGIENWLVAACNAVGLKRPTDVQWNCIPPALAGRNILASAETGSGKTAAFALPIIQQ 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L++DPYGV A+V+TPTRELA+Q+ +QF ALGS + LR VVVGG+D++ QA L RPHV
Sbjct: 69 LSKDPYGVFAVVLTPTRELAFQIQDQFVALGSRIQLRNCVVVGGLDMMKQAVELCKRPHV 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
VIATPGR+ + + +RT+ +VLDEADR+L+ FE EL + LPKNR T L
Sbjct: 129 VIATPGRLSDHINSSSGVKEALARTRVVVLDEADRLLEDCFETELANILDALPKNRSTYL 188
Query: 242 FSATMTSDLQTLLELSANKAYF-YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
FSAT+T+ ++ L L A K F YEA TV T+++ Y+ +PK VKDVYL+H++ E
Sbjct: 189 FSATITASIEELKHLGAMKNCFEYEADNPKTTVRTVREMYLHMPKMVKDVYLVHLVRNSE 248
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
++ IIFV +C + LLLE++ + + Q++RL+AL RFK G+ IL+A
Sbjct: 249 ---AKAMIIFVGRKTTCVFVQLLLEDIPCSCLVVLLNSRQNRRLAALDRFKGGRCRILVA 305
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VDLV+NYDIP +DY+HRVGRTARAGR G AVS VTQ DV+L+H IE
Sbjct: 306 TDVASRGLDIPKVDLVINYDIPNDAKDYIHRVGRTARAGRTGTAVSLVTQYDVELVHNIE 365
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
A K+LE+F KE+EVL ++ V KA+R+A +++++ E + +R+
Sbjct: 366 AETEKKLEDFGLKEEEVLESMSEVMKAKRLARVQMLELDSEGQDDKRR 413
>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
dendrobatidis JAM81]
Length = 460
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/425 (47%), Positives = 285/425 (67%), Gaps = 8/425 (1%)
Query: 29 PEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
PE E ++ K TQ + TF +GL W + + K + +R P+ +Q
Sbjct: 7 PENELNAQVEKQTQQSTL-----KQAQVSESATFESIGLRPWLIGSLKSISIRHPSEIQQ 61
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
CIP IL G+D++G A+TGSGKTAAFALPIL +L+EDPYGV ALV+TP RELA+Q+AEQF
Sbjct: 62 ACIPHILNGRDIIGGAKTGSGKTAAFALPILQKLSEDPYGVFALVLTPARELAFQIAEQF 121
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+ LG+G++L+ VVVGGMD+++QA L +PHV+IATPGR+ + + F R +F
Sbjct: 122 RVLGTGINLKLSVVVGGMDMMSQALELSQKPHVIIATPGRLVDHIRSSSNAIH-FKRIRF 180
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE 268
LV+DEADR+LD F ++L + LP+ RQTLLF+ATMT +++ L S + YE E
Sbjct: 181 LVMDEADRLLDDTFSDDLEGILSQLPQKRQTLLFTATMTDEIKELQMSSKTLPFVYECAE 240
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
+ TVE L QQYI + NV+D YL H++ E + ++ IIF S CR+C L ++L+EL
Sbjct: 241 RYSTVEKLDQQYILVSSNVRDAYLAHIVR--ESLSGKTMIIFASKCRTCETLRIMLKELG 298
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
++ ALH+ Q+ RL +L +FKSG IL+ATDV SRGLDIPTV +V+NY++P DY
Sbjct: 299 LKSTALHAQMPQNDRLGSLAKFKSGIVPILIATDVGSRGLDIPTVKVVINYELPADATDY 358
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+HRVGRTARAG+GG+++SFV++ DVD+IH IE K++ E+ E +VL + V A+
Sbjct: 359 IHRVGRTARAGQGGMSLSFVSERDVDIIHNIEKKTKKKMTEYTVPENDVLEILDEVNLAK 418
Query: 449 RVATM 453
R+A M
Sbjct: 419 RIAKM 423
>gi|242005222|ref|XP_002423470.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212506558|gb|EEB10732.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 422
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/420 (48%), Positives = 284/420 (67%), Gaps = 11/420 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L L +W V+ C G+ +PTP+Q HCIPKILEG D +G A+TGSGKT AFALPIL +
Sbjct: 5 FEDLNLNKWIVRQCDSFGLTKPTPIQAHCIPKILEGNDCIGCAKTGSGKTLAFALPILQK 64
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P+G+ ALV+TPTRELA+Q+ EQF A G ++L+ V+ GGMD++TQ + L RPH+
Sbjct: 65 LSEEPFGIFALVLTPTRELAFQIGEQFLAYGKVINLKLCVISGGMDMVTQGQELSKRPHI 124
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V++TPGR L + D FS + +FLVLDEADR+L F++++ +F+ LP +Q
Sbjct: 125 VVSTPGR----LADHLDSCNTFSLKKIRFLVLDEADRLLSGQFDDQISTIFKSLPLKKQI 180
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS-- 297
LLFSAT+ L+ EL + + + TV+ L+Q Y+ P +VKD YL+ V+
Sbjct: 181 LLFSATINDTLKQAEELLSKNVFSFIDKSDVATVDNLQQFYVLCPDHVKDAYLVEVIQLY 240
Query: 298 -KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K + G + IIF TCR+C LLS+ L E+ E VA+HS Q +RL+AL RFKS
Sbjct: 241 RKNNENG--NIIIFTDTCRNCQLLSMTLNEVGFENVAIHSMMKQKERLAALSRFKSNIVK 298
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+ATD+ASRGLDIPTV+LV+N+ IP P+DY+HRVGRTARAGR G++VS VT D+ LI
Sbjct: 299 TLIATDIASRGLDIPTVELVINHSIPNVPKDYIHRVGRTARAGRAGMSVSLVTPVDIKLI 358
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
H IE+++ +L+E+ ++EV+ +T+V +R A +KL + F EK K++KL M A
Sbjct: 359 HAIESIINTKLKEYSINDKEVIKILTQVKVTKREAEIKLDETDFYEKKMINKRKKLMMEA 418
>gi|115532548|ref|NP_001040789.1| Protein H20J04.4, isoform b [Caenorhabditis elegans]
gi|351065690|emb|CCD61680.1| Protein H20J04.4, isoform b [Caenorhabditis elegans]
Length = 561
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/432 (46%), Positives = 295/432 (68%), Gaps = 6/432 (1%)
Query: 49 PDPNSTTTDSTVT--FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
P P + D+ T F+ LG+ W Q + + ++ TPVQ CIPKILEG D+LG A+T
Sbjct: 76 PKPIQISEDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCART 135
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
G+GKT AFA+PIL +L+ DPYG+ AL++TPTRELA+Q+AEQF ALG + L+C V+VGG
Sbjct: 136 GTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGR 195
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD-IPPVFSRTKFLVLDEADRVLDVGFEEE 225
L+ QA+ L RPHVV+ATPGR+ L+E DPD I VF + +F VLDEADR+L+ + ++
Sbjct: 196 SLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQ 255
Query: 226 LRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYE--AYEGFKTVETLKQQYIFI 283
L+ +F+ + + RQTLL SAT+T+++ L +S K YF+E + TV+ L+Q+Y+
Sbjct: 256 LKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVC 315
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQ 342
P VKD YL++V+ + +S++ IF TCR C L+ + E L +LHS Q Q
Sbjct: 316 PVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQ 375
Query: 343 RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402
RL+AL F+S +++ TDVASRGLDIP VDLV+N+++P+ P+ Y+HRVGR+ARAGR G
Sbjct: 376 RLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFG 435
Query: 403 LAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
A+SFVTQ DV+L+ +E V+GK+L+E + + V +T+V A++ A +KL + F E
Sbjct: 436 SALSFVTQYDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQVLVAKKEAELKLENQKFGE 495
Query: 463 KAKERKKQKLKM 474
K + ++++L M
Sbjct: 496 KKEINRRKELLM 507
>gi|417401748|gb|JAA47742.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 483
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/415 (50%), Positives = 288/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++TQA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIHFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQVLCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQINKKLEEFVVEEAEVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQL 416
>gi|380026593|ref|XP_003697032.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Apis
florea]
Length = 452
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/416 (46%), Positives = 288/416 (69%), Gaps = 5/416 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA L L+ W VQ C +G++ PT +Q +CIP+IL G D +G A+TGSGKT AFALPIL
Sbjct: 1 MTFADLNLSLWLVQQCTFMGLKYPTSIQQNCIPRILAGDDCIGCAKTGSGKTLAFALPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+EDPYG+ ALV+TPTRELA+Q+A+QF A+G + L+ V+VGGMD++ Q L P
Sbjct: 61 QKLSEDPYGIFALVLTPTRELAFQIADQFSAIGKSIGLKKCVIVGGMDMVIQGLELSKHP 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+V+ATPGR+ LE + KFLVLDEADR+L+ F+++L+ +F+ LPK +Q
Sbjct: 121 HIVVATPGRLADHLESCNTFS--LKQIKFLVLDEADRLLEGYFDDQLKTIFEALPKQKQM 178
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSATMT L + + ++K + +E+ + G TV+ L Q Y+ P +++D +L+ V+
Sbjct: 179 LLFSATMTDTLHKVKHIVSSKTFIWESKDESGIATVKELNQHYVLCPSDIRDSFLVEVIR 238
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+I IF TC+ C +LS+ L ++ + VALHS Q RL+AL +FKS
Sbjct: 239 TFRANNKNGSIMIFTDTCKHCQILSMTLNDVGFKNVALHSMVKQKDRLAALVQFKSNHIK 298
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV+LV+N+ IP P++Y+HRVGRTARAG+ G+A++ +T +D+ L+
Sbjct: 299 ILIATDVAARGLDIPTVELVINHIIPNVPKEYIHRVGRTARAGKSGMAITLITPHDIKLL 358
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
H +E ++G +L E++ ++E+++ +T++ A+R A MKL + F EK K++KL
Sbjct: 359 HAVENIIGTKLTEYKVNDKEIITILTQISVAKREAEMKLDETNFYEKKIINKRKKL 414
>gi|346466157|gb|AEO32923.1| hypothetical protein [Amblyomma maculatum]
Length = 487
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/435 (49%), Positives = 290/435 (66%), Gaps = 5/435 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
TVTF L L +W + LG++ P+P+Q +CIP IL GKD +G A+TGSGKT AFALPI
Sbjct: 29 TVTFKDLKLNKWMIDQLDTLGIKNPSPIQENCIPAILNGKDCIGCAKTGSGKTLAFALPI 88
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L +L EDPYG+ AL++TPTRELA+Q++EQFK +G LR V+VGGMD++TQ + L
Sbjct: 89 LQKLFEDPYGIFALILTPTRELAFQISEQFKVVGKAAGLRDCVIVGGMDMVTQGQILAES 148
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHVV+ATPGR+ LE R +FLVLDEADR+L+ F E+L+ +F LPK RQ
Sbjct: 149 PHVVVATPGRLADHLESCNTF--TLKRIRFLVLDEADRLLEGHFNEQLKTIFAALPKKRQ 206
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T+ L+ L ++ +FY A TVE L Q+Y+ P +V++ YL+H+L K
Sbjct: 207 TLLFSATITATLEELRNIAMTDPFFYTAPSDVVTVEELDQRYVLTPVSVREAYLVHILHK 266
Query: 299 -MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ M S IIF TC+ C +LS+ L+ L LHS Q RL++L FKS +
Sbjct: 267 FLDSMPKGSVIIFTGTCKGCQVLSIALKSLGFPNAPLHSQMPQRVRLASLSTFKSNTTRV 326
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIP+V+LVLN+++P P+DYVHRVGRTARAGRGG A++ VTQ+DV L+
Sbjct: 327 LVATDVASRGLDIPSVELVLNHNVPSAPKDYVHRVGRTARAGRGGKAITLVTQHDVHLVT 386
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK--AKERKKQKLKML 475
IE ++ +L KE EVL +T+V A R A ++L + FEE+ RKK L+ L
Sbjct: 387 AIEELIKTKLVLQPTKEPEVLKILTQVSVALREAEIRLDEQDFEERKLINWRKKLLLQGL 446
Query: 476 AEKGSLKKRSEKRKK 490
KR +K+++
Sbjct: 447 DPDEVEAKRRKKQQQ 461
>gi|355683302|gb|AER97082.1| DEAD box polypeptide 49 [Mustela putorius furo]
Length = 469
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/405 (49%), Positives = 280/405 (69%), Gaps = 6/405 (1%)
Query: 72 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA 131
V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG+
Sbjct: 2 VEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFC 61
Query: 132 LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKV 191
LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHVVIATPGR+
Sbjct: 62 LVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLAD 121
Query: 192 LLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQTLLFSATMTS 248
L + +FLV+DEADR+++ G F +L + +P RQTLLFSAT+T
Sbjct: 122 HLRSSNTFS--IKKIRFLVMDEADRLVEQGCTDFTVDLEAILAAVPARRQTLLFSATLTD 179
Query: 249 DLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED-MGIRSA 307
L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++ +D S
Sbjct: 180 TLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSI 239
Query: 308 IIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367
IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS IL+ATDVASRG
Sbjct: 240 IIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRG 299
Query: 368 LDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQL 427
LDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H IE + K+L
Sbjct: 300 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKL 359
Query: 428 EEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
EEF +E VL +T+V RR +KL F+EK + K+++L
Sbjct: 360 EEFSVEEASVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQL 404
>gi|341902886|gb|EGT58821.1| hypothetical protein CAEBREN_15104 [Caenorhabditis brenneri]
Length = 554
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/433 (45%), Positives = 295/433 (68%), Gaps = 6/433 (1%)
Query: 48 NPDPNSTTTDSTVT--FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
P P + ++ T F LG+A W Q + + ++ TPVQ CIPKIL+G D+LG A+
Sbjct: 68 TPQPVQISEENMTTKKFQQLGVASWITQQLQTMHIKTATPVQAACIPKILDGSDILGCAR 127
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TG+GKT AFA+PIL +L+ DPYG+ AL++TPTRELA+Q+A+QF A+G + L+C V+VGG
Sbjct: 128 TGTGKTLAFAIPILQKLSVDPYGIFALILTPTRELAFQIADQFVAVGKPITLKCSVIVGG 187
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD-IPPVFSRTKFLVLDEADRVLDVGFEE 224
L+ QA+ L RPH+V+ATPGR+ L+E D D I VF + +F VLDEADR+L+ + +
Sbjct: 188 RSLIQQARELSERPHIVVATPGRLADLIESDQDVIAKVFKKIQFFVLDEADRMLEGQYND 247
Query: 225 ELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGF--KTVETLKQQYIF 282
+L+ +F+ +P+ RQTLL SAT+T+++ L ++S K YF+E TV+ L+Q+++
Sbjct: 248 QLKPIFESIPQKRQTLLLSATITNNINMLHKVSTRKPYFFEDKTNADETTVDRLEQKFVV 307
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341
P VKD YL++V+ + +S++ IF TCR C L+ + E L +LHS +Q
Sbjct: 308 CPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIAQK 367
Query: 342 QRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG 401
QRL+AL F+S +++ TDVASRGLDIP VDLV+N+++P+ P+ YVHRVGR+ARAGR
Sbjct: 368 QRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYVHRVGRSARAGRF 427
Query: 402 GLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFE 461
G A+SFVTQ DV+L+ +E +GK+LEE + + V +T+V A+R A +KL + F
Sbjct: 428 GSALSFVTQYDVELLQAVEQTIGKKLEELKVNAKHVTKYVTQVLVAKREAELKLDNQKFG 487
Query: 462 EKAKERKKQKLKM 474
EK + ++++L M
Sbjct: 488 EKKEINRRKELLM 500
>gi|326934515|ref|XP_003213334.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Meleagris gallopavo]
Length = 482
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/441 (47%), Positives = 291/441 (65%), Gaps = 17/441 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA W V+ +++G+ RPTPVQ CIP IL+G+D LG A+TGSGKTAAF LP+L
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ VVVGG+D++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + KFLVLDEADR+L+ G F +L V+ + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--LKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L L L+ N+ +F+EA +TV+ L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF TC+ C +L+++L + +VALHS Q QR +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ L+H
Sbjct: 302 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL----- 472
IE + +L+EF +E+ VL + V RR ++L F+EK + K++++
Sbjct: 362 AIEEEIKLKLQEFSVEEKLVLDILNHVNVTRRECEIELEYMDFDEKKEINKRKQMILEGK 421
Query: 473 ------KMLAEKGSLKKRSEK 487
K AE +KK++ K
Sbjct: 422 DPDLEEKRKAELAKIKKKNNK 442
>gi|393910350|gb|EFO27145.2| Ddx49-A-prov protein [Loa loa]
Length = 509
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/441 (47%), Positives = 294/441 (66%), Gaps = 9/441 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF+ LGL++W + L M PTPVQ +CIP IL G DVLG A+TG+GKT AF LPILH
Sbjct: 44 TFSELGLSKWLCNQVRHLAMNTPTPVQVNCIPHILAGSDVLGCAKTGTGKTLAFGLPILH 103
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
LA DPYG+ ALV+TPTRELA Q+ +QF ALG+ + L+ +VVGG D + Q L RPH
Sbjct: 104 ELAIDPYGICALVLTPTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLARRPH 163
Query: 181 VVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
+V+ATPGR+ LE D + +F + +FLVLDEADR+LD + EL+ + LPK RQT
Sbjct: 164 IVVATPGRLADHLESDSENTGKLFKKLRFLVLDEADRLLDGQYSIELKTILNFLPKQRQT 223
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSAT+TS L L ++S K YF+E TV+ L+Q+Y+ P VKD YL++V+
Sbjct: 224 LLFSATITSALSQLHQVSVKKPYFFEDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNF 283
Query: 300 EDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ S I IF TCR C L+++ L + +LHS SQ +R S+L +F+SG+ IL
Sbjct: 284 HEKHPDSLILIFSHTCRECQALAIMFHGLGFQVGSLHSQISQQERTSSLTKFRSGRIKIL 343
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ TDVASRGLDIP VDLV+N+++P+ P+ Y+HRVGR+ARAGR G A+ FVTQ D+ L+ E
Sbjct: 344 ICTDVASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYDIFLVQE 403
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA-- 476
IE V+GK+L++ +++V +T+V +R A +KL F E+ K++++ +
Sbjct: 404 IEKVIGKKLDKLIVNDKKVTQYVTQVLVTKREAEIKLDQQNFGERKIINKRKEMLIAGLD 463
Query: 477 ----EKGSLKKRSEKRKKSGE 493
EK +LK + E+RK++G+
Sbjct: 464 PDEVEK-TLKMQREQRKQTGK 483
>gi|341882300|gb|EGT38235.1| hypothetical protein CAEBREN_08382 [Caenorhabditis brenneri]
Length = 554
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/433 (45%), Positives = 295/433 (68%), Gaps = 6/433 (1%)
Query: 48 NPDPNSTTTDSTVT--FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
P P + ++ T F LG+A W Q + + ++ TPVQ CIPKIL+G D+LG A+
Sbjct: 66 TPQPVQISEENMTTKKFQQLGVASWITQQLQTMHIKTATPVQAACIPKILDGSDILGCAR 125
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TG+GKT AFA+PIL +L+ DPYG+ AL++TPTRELA+Q+A+QF A+G + L+C V+VGG
Sbjct: 126 TGTGKTLAFAIPILQKLSVDPYGIFALILTPTRELAFQIADQFVAVGKPITLKCSVIVGG 185
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD-IPPVFSRTKFLVLDEADRVLDVGFEE 224
L+ QA+ L RPH+V+ATPGR+ L+E D D I VF + +F VLDEADR+L+ + +
Sbjct: 186 RSLIQQARELSERPHIVVATPGRLADLIESDQDVIAKVFKKIQFFVLDEADRMLEGQYND 245
Query: 225 ELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGF--KTVETLKQQYIF 282
+L+ +F+ +P+ RQTLL SAT+T+++ L ++S K YF+E TV+ L+Q+++
Sbjct: 246 QLKPIFESIPQKRQTLLLSATITNNINMLHKVSTRKPYFFEDKTNADETTVDRLEQKFVV 305
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341
P VKD YL++V+ + +S++ IF TCR C L+ + E L +LHS +Q
Sbjct: 306 CPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIAQK 365
Query: 342 QRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG 401
QRL+AL F+S +++ TDVASRGLDIP VDLV+N+++P+ P+ YVHRVGR+ARAGR
Sbjct: 366 QRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYVHRVGRSARAGRF 425
Query: 402 GLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFE 461
G A+SFVTQ DV+L+ +E +GK+LEE + + V +T+V A+R A +KL + F
Sbjct: 426 GSALSFVTQYDVELLQAVEQTIGKKLEELKVNAKHVTKYVTQVLVAKREAELKLDNQKFG 485
Query: 462 EKAKERKKQKLKM 474
EK + ++++L M
Sbjct: 486 EKKEINRRKELLM 498
>gi|340728741|ref|XP_003402675.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Bombus
terrestris]
Length = 452
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/416 (46%), Positives = 289/416 (69%), Gaps = 5/416 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA L L+ W VQ C +G++ PTP+Q +CIPKIL G D +G A+TGSGKT AFALPIL
Sbjct: 1 MSFAALNLSSWLVQQCNFMGLKCPTPIQKNCIPKILAGDDCIGCAKTGSGKTLAFALPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+EDPYG+ AL++TPTRELA+Q+A+QF A+G + L+ V+VGGMD++ Q L P
Sbjct: 61 QKLSEDPYGIFALILTPTRELAFQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHP 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+V+ATPGR+ LE + KFLVLDEADR+L+ F+++L+ +F+ LPK +Q
Sbjct: 121 HIVVATPGRLADHLESCNTFS--LKQIKFLVLDEADRLLEGHFDDQLKTIFEALPKRKQM 178
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSATMT L + ++++KA+ +E+ + G TV+ L Q+YI P +V+D +L+ +
Sbjct: 179 LLFSATMTDTLDKVKHIASSKAFIWESKDESGVATVKELDQRYILCPSDVRDSFLVEAIR 238
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+I IF TC+ C +LS+ L ++ + VALH+ Q RL+AL +FKS A
Sbjct: 239 TFRGSNKDGSIMIFTDTCKHCQVLSMTLNDVGFKNVALHAMIKQKDRLAALTQFKSNHAK 298
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV+LV+N+ IP ++Y+HRVGRTARAG+ G+A++ +T +D+ L+
Sbjct: 299 ILIATDVAARGLDIPTVELVINHIIPNVTKEYIHRVGRTARAGKNGMAITLITPHDIKLL 358
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
H IE +G +L E++ ++E+++ +T++ A+R A MKL + F K K++KL
Sbjct: 359 HAIENAIGTKLTEYKVNDKEIVTILTQISVAKREAEMKLDEMDFYGKKMINKRKKL 414
>gi|354473856|ref|XP_003499148.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Cricetulus
griseus]
gi|344241323|gb|EGV97426.1| putative ATP-dependent RNA helicase DDX49 [Cricetulus griseus]
Length = 480
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/418 (50%), Positives = 292/418 (69%), Gaps = 12/418 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP IL+G+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILQGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTLN--MKKIRFLVMDEADRLLEQGCTDFTADLETILAAIPVRRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL-- 296
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 297 --SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+++ED I IIF +TC++C +L ++L +L VALHS Q +R +AL +FKS
Sbjct: 242 FQNQLEDCSI---IIFTNTCKTCQVLCMMLRKLSFPTVALHSMMKQKERFAALAKFKSSV 298
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
L+H +E + KQLEE +E EVL+ +T+V RR +KL F+EK + K+++L
Sbjct: 359 LLHAVEEQIKKQLEELVVEEAEVLNILTQVNVVRRECEIKLEASHFDEKKEINKRKQL 416
>gi|350415766|ref|XP_003490744.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Bombus
impatiens]
Length = 452
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/416 (46%), Positives = 288/416 (69%), Gaps = 5/416 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA L L+ W VQ C +G++ PTP+Q +CIPKIL G D +G A+TGSGKT AFALPIL
Sbjct: 1 MSFAALNLSSWLVQQCNFMGLKCPTPIQKNCIPKILAGDDCIGCAKTGSGKTLAFALPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+EDPYG+ ALV+TPTRELA+Q+A+QF A+G + L+ V+VGGMD++ Q L P
Sbjct: 61 QKLSEDPYGIFALVLTPTRELAFQIADQFSAIGKSIGLKKCVIVGGMDMVVQGLELSKHP 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+V+ATPGR+ LE + KFLVLDEADR+L+ F+++L+ +F+ LPK +Q
Sbjct: 121 HIVVATPGRLADHLESCNTFS--LKQIKFLVLDEADRLLEGHFDDQLKTIFEALPKRKQM 178
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSATMT L + ++++KA+ +E+ + G TV+ L Q+Y+ P +V+D +L+ +
Sbjct: 179 LLFSATMTDTLDKVKHIASSKAFIWESKDEFGVATVKELDQRYVLCPSDVRDSFLVEAIR 238
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+I IF TC+ C +LS+ L ++ VALH+ Q RL+AL +FKS A
Sbjct: 239 TFRASNKDGSIMIFTDTCKHCQVLSMTLNDVGFNNVALHAMIKQKDRLAALTQFKSNHAK 298
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV+LV+N+ IP ++Y+HRVGRTARAG+ G+A++ +T +D+ L+
Sbjct: 299 ILIATDVAARGLDIPTVELVINHIIPNVTKEYIHRVGRTARAGKNGMAITLITPHDIKLL 358
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
H IE +G +L E++ ++E+++ +T++ A+R A MKL + F K K++KL
Sbjct: 359 HAIENAIGTKLTEYKVNDKEIVTILTQISVAKREAEMKLDEMDFYGKKMINKRKKL 414
>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
Length = 461
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 290/424 (68%), Gaps = 9/424 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ L L W + C+ +G+++PTP+Q +CIP+IL G+D +G A+TGSGKT AF LPIL +
Sbjct: 13 FSDLKLNSWLLAQCESMGLKKPTPIQQNCIPRILMGEDCIGCAKTGSGKTLAFVLPILQK 72
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L EDPYG+ ALV+TPTRELA+Q+A+QF A+G ++L+ V+VGGMD++ Q L RPH+
Sbjct: 73 LCEDPYGIFALVLTPTRELAFQIADQFTAIGKAINLKKCVIVGGMDMMVQGLELSKRPHI 132
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V+ATPGR L + D FS + KFLVLDEADR+L F+ +L+ +F LPK +Q
Sbjct: 133 VVATPGR----LADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDGQLKTIFAALPKQKQV 188
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
L FSATMT L + ++++ + + ++ + G TV+ L Q+Y+ PK+V D YL+ V+
Sbjct: 189 LFFSATMTDTLDKVKQIASAEVFTWQEEDDFGIATVKELDQRYVLCPKDVLDSYLVEVIK 248
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+I IF TC+ C LLS++L + VALH+ Q +RL+AL++FKS
Sbjct: 249 TFRTTNENGSIMIFTDTCKYCQLLSMMLNNVGFTNVALHAMIKQKERLAALNKFKSNHVQ 308
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV L++N+ IP P++Y+HRVGRTARAG+ G+++S +T ND+ L+
Sbjct: 309 ILIATDVAARGLDIPTVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPNDIKLL 368
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
H IE V+G +L E++ ++++++ +T+V A+R A +KL + F EK K++KL +
Sbjct: 369 HAIENVIGIKLTEYKIDDKKIITILTQVSVAKRTAEIKLDETDFYEKKMINKQKKLILEE 428
Query: 477 EKGS 480
GS
Sbjct: 429 LDGS 432
>gi|427783023|gb|JAA56963.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]
Length = 467
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/415 (49%), Positives = 286/415 (68%), Gaps = 4/415 (0%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
TV FA L L +W + + LG+ +P+P+Q +CIP IL GKD +G A+TGSGKT AFALPI
Sbjct: 9 TVNFADLKLNKWIIDQLETLGISKPSPIQENCIPAILSGKDCIGCAKTGSGKTLAFALPI 68
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L +L EDPYG+ AL++TPTRELA+Q+ +QFK +G + L+ V+VGGMD++TQ + L
Sbjct: 69 LQKLFEDPYGIFALILTPTRELAFQICDQFKVVGKAVGLKECVIVGGMDMVTQGQVLAES 128
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHVV+ATPGR+ LE R +FLVLDEADR+L+ F E+L+ +F LPK RQ
Sbjct: 129 PHVVVATPGRLADHLESCNTF--TLKRIRFLVLDEADRLLEGHFNEQLKTIFAALPK-RQ 185
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T+ L+ L ++ +FY A TVE L Q+Y+ +P +V++ YL+H+L +
Sbjct: 186 TLLFSATITATLEELRNVAMTDPFFYTAPADVVTVEELDQRYVLMPVSVREAYLVHILKR 245
Query: 299 -MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ M S IIF TC+ C +LS+ L+ L LHS Q +RL++L+ FKS +
Sbjct: 246 FLDSMPKGSVIIFTGTCKGCQVLSIALKSLGFLNAPLHSQMPQRERLASLNLFKSNTTRV 305
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIP+V+LVLN+++P P+DYVHRVGRTARAGRGG A++ VTQ+DV L+
Sbjct: 306 LVATDVASRGLDIPSVELVLNHNVPSAPKDYVHRVGRTARAGRGGKAITLVTQHDVHLVE 365
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IEA++ +L KE EVL +T+V A R A ++L + FEE+ ++KL
Sbjct: 366 AIEALIKTKLVLQPTKESEVLKILTQVSVALREAEIRLDEQDFEERKLINWRKKL 420
>gi|384487839|gb|EIE80019.1| hypothetical protein RO3G_04724 [Rhizopus delemar RA 99-880]
Length = 425
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/423 (48%), Positives = 282/423 (66%), Gaps = 6/423 (1%)
Query: 33 PESKN-AKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCI 91
PES+ ++ ++ T ST + F +G+ EW +T K + ++ PT +Q CI
Sbjct: 2 PESRTLSRVAASKQKTQEKKQSTIPPAGSRFEDVGVEEWMCETLKSMAIKEPTEIQRACI 61
Query: 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151
I++GKDV+G A+TGSGKTAAFA+PIL +L++DPYGV ALV+TPTRELAYQ+AEQF+ L
Sbjct: 62 QPIMDGKDVIGGAKTGSGKTAAFAIPILQKLSQDPYGVFALVLTPTRELAYQIAEQFRVL 121
Query: 152 GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211
G G+ ++ VVVGGMD++TQA L RPH++IATPGR++ ++ SR KFLV+
Sbjct: 122 GKGIGVKECVVVGGMDMMTQALELAKRPHIIIATPGRLRDHIQSSSGAVN-LSRCKFLVM 180
Query: 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL---ELSANKAYFYEAYE 268
DEADR+L F EL + LPKNRQTLLF+ATMT + L E A + + +
Sbjct: 181 DEADRMLSSTFVPELETILPLLPKNRQTLLFTATMTESILALKDAEEDPAKRPFVHVCDM 240
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
TV TL Q Y+F+P VK VYL H+L + +D+ RS IIF C + L++++L+EL
Sbjct: 241 SISTVNTLDQFYVFVPSQVKVVYLAHLL-RTDDLKERSVIIFCGRCSTAELITVMLKELG 299
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
ALHS SQ QRL +L +F++ IL++TDV SRGLDIP+V+ VLN+DIPR P DY
Sbjct: 300 IRCTALHSEMSQQQRLDSLGKFRAEVVKILISTDVGSRGLDIPSVECVLNFDIPRDPTDY 359
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+HRVGRTARAGRGG A+S V + D+ LI IE KQ+E++E E EVL ++ V A+
Sbjct: 360 IHRVGRTARAGRGGKAISIVAEKDIQLIQNIEERTNKQMEKYEVDENEVLDILSDVTAAK 419
Query: 449 RVA 451
R+A
Sbjct: 420 RIA 422
>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
Length = 457
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 287/416 (68%), Gaps = 9/416 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ L L W + C +G++ PT +Q +CIP+IL G+D +G A+TGSGKT AFALPIL +
Sbjct: 7 FSDLKLNSWLLAQCDTMGLKNPTLIQQNCIPRILAGEDCIGCAKTGSGKTLAFALPILQK 66
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L EDPYG+ ALV+TPTRELA+Q+A+QF A+G ++L+ VVVGGMD++ Q L RPH+
Sbjct: 67 LCEDPYGIFALVLTPTRELAFQIADQFAAIGKAINLKKCVVVGGMDMMVQGLELSKRPHI 126
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V+ATPGR L + D FS + KFLVLDEADR+L F+++L+ +F +PK +Q
Sbjct: 127 VVATPGR----LADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAAVPKQKQV 182
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSATMT L + +++++K + +E + G TV L Q+Y+ PK+V D +L+ V+
Sbjct: 183 LLFSATMTDALDKVKQIASSKVFIWEEEDDAGIATVRELDQRYVLCPKDVLDSFLVEVIR 242
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+I IF TC+ C LLS++L ++ +ALH+ Q +RL+AL +FKS
Sbjct: 243 TFRATNKNGSIMIFTDTCKHCQLLSMMLNDVGFTNMALHAMIKQKERLAALSKFKSNHVQ 302
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIPTV+LV+N+ IP P++Y+HRVGRTARAGR G+A+S +T ND+ L+
Sbjct: 303 ILIATDVAARGLDIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPNDIKLL 362
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
H IE +G +L E++ ++E+++ +T++ A+R A ++L + F EK K++KL
Sbjct: 363 HMIEDTIGTKLTEYKVDDKEIVTILTQISVAKREAEIRLDETDFYEKKMINKRKKL 418
>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
gi|74897375|sp|Q55BR9.1|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
Full=DEAD box protein 49
gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
Length = 508
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/413 (48%), Positives = 282/413 (68%), Gaps = 7/413 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL W V CK+LG + P+ +Q + IP+IL+G+D++ A+TGSGKTA+FA+PIL+
Sbjct: 5 TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN 64
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L+EDPYGV A+++TPTRELA Q+ EQF A+G+ +++ C VV+GG+D +TQA L RPH
Sbjct: 65 QLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPH 124
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKNRQ 238
+++ATPGR+ L I F KFLVLDEADR+L FE E+ + + L P+ RQ
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFC--KFLVLDEADRLLGEDFELEIASILEHLPPPEKRQ 182
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSATMT +L L ++ NK + +E + TV+TLKQ+YI++P KD YL+++L K
Sbjct: 183 TLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKK 242
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E SAI+FV+ C + + +L +LD +V+LHSF Q RL+AL FKSG+ +L
Sbjct: 243 HEG---SSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVL 299
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP V +V+NY + +DY+HRVGRTAR GR G A+SF+T +DV LI
Sbjct: 300 VATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKG 359
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
IE ++ KQLE ++ + EV + AR++ + L + F K KER+ ++
Sbjct: 360 IEEIIKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTER 412
>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
Length = 565
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/435 (44%), Positives = 298/435 (68%), Gaps = 7/435 (1%)
Query: 45 KFTNPDPNSTTTDSTVT--FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLG 102
K +P P + D+ T F+ LG++ W Q + + ++ TPVQ CIP+IL+G D+LG
Sbjct: 76 KTNDPQPFQISEDNMTTRKFSELGVSSWITQQLQTMHIKTATPVQAACIPRILDGSDILG 135
Query: 103 LAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
A+TG+GKT AFA+PIL +L+ DPYG+ AL++TPTRELA+Q+A+QF A+G + L+C V+
Sbjct: 136 CARTGTGKTLAFAIPILQKLSIDPYGIYALILTPTRELAFQIADQFTAVGKPITLKCSVI 195
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
VGG L+ QA+ L RPH+V+ATPGR+ L+E DP++ + + +F VLDEADR+L+ +
Sbjct: 196 VGGRSLIHQARELSERPHIVVATPGRLTDLIESDPEV--IAKKIQFFVLDEADRMLEGQY 253
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYE--AYEGFKTVETLKQQY 280
++L+ +FQ +P+ RQTLL SAT+T ++ TL ++S K YF+E + TV+ L+Q++
Sbjct: 254 NDQLKPIFQSIPEKRQTLLLSATITQNINTLHKVSTRKPYFFEDKGKDDETTVDRLEQKF 313
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
+ P VKD YL++V+ + +S++ IF TCR C L+ + E L +LHS
Sbjct: 314 VVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIP 373
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
Q QRL+AL F+S +++ TDVASRGLDIP VDLV+N+++P+ P+ Y+HRVGR+ARAG
Sbjct: 374 QKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAG 433
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDG 459
R G A+SFVTQ DV+L+ +E +GK+L+E + + V +T+V A++ A +KL +
Sbjct: 434 RFGSALSFVTQYDVELLQAVEKTIGKKLDELKVSAKHVTKYVTQVLVAKKEAELKLENQK 493
Query: 460 FEEKAKERKKQKLKM 474
F E+ + +++++ M
Sbjct: 494 FGERKEINRRKEMLM 508
>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
Length = 478
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/414 (48%), Positives = 279/414 (67%), Gaps = 2/414 (0%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF+ LGL++W + L M PTPVQ +CIP IL G DVLG A+TG+GKT AF LPILH
Sbjct: 44 TFSELGLSKWLCNQVRHLAMNTPTPVQVNCIPHILAGSDVLGCAKTGTGKTLAFGLPILH 103
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
LA DPYG+ ALV+TPTRELA Q+ +QF ALG+ + L+ +VVGG D + Q L RPH
Sbjct: 104 ELAIDPYGICALVLTPTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLARRPH 163
Query: 181 VVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
+V+ATPGR+ LE D + +F + +FLVLDEADR+LD + EL+ + LPK RQT
Sbjct: 164 IVVATPGRLADHLESDSENTGKLFKKLRFLVLDEADRLLDGQYSIELKTILNFLPKQRQT 223
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSAT+TS L L ++S K YF+E TV+ L+Q+Y+ P VKD YL++V+
Sbjct: 224 LLFSATITSALSQLHQVSVKKPYFFEDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNF 283
Query: 300 EDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ S I IF TCR C L+++ L + +LHS SQ +R S+L +F+SG+ IL
Sbjct: 284 HEKHPDSLILIFSHTCRECQALAIMFHGLGFQVGSLHSQISQQERTSSLTKFRSGRIKIL 343
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ TDVASRGLDIP VDLV+N+++P+ P+ Y+HRVGR+ARAGR G A+ FVTQ D+ L+ E
Sbjct: 344 ICTDVASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYDIFLVQE 403
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE V+GK+L++ +++V +T+V +R A +KL F E+ K++++
Sbjct: 404 IEKVIGKKLDKLIVNDKKVTQYVTQVLVTKREAEIKLDQQNFGERKIINKRKEM 457
>gi|332374708|gb|AEE62495.1| unknown [Dendroctonus ponderosae]
Length = 470
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/416 (50%), Positives = 282/416 (67%), Gaps = 10/416 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
F+ L L W V+ C +G++RPTP+Q +CIPKILEGK +G A+TGSGKT AFALPI+
Sbjct: 7 NFSQLKLQNWIVKQCHSIGVKRPTPIQANCIPKILEGKTCIGAAKTGSGKTLAFALPIVQ 66
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L EDPYG+ ALV+TP RELA+Q+A+QF LG +++R VVVGGMD++ Q + L PH
Sbjct: 67 KLYEDPYGIYALVLTPIRELAFQIADQFAILGKPMNMRTCVVVGGMDMVEQGRQLSKVPH 126
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VV+ATPGR+ LE SR KFLV+DEADR+L F+++++ +F LPK RQ++
Sbjct: 127 VVVATPGRLVDHLEGCDTF--TLSRIKFLVIDEADRLLGGLFDDQIKRIFSVLPKTRQSI 184
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFK--TVETLKQQYIFIPKNVKDVYLMHVLSK 298
FSATMT LQTL +L A A+FYE + TV L QQY+ P VKD YL+ +L
Sbjct: 185 YFSATMTDTLQTLKKLVAEDAFFYEDIGPSEAVTVAGLTQQYMLCPAYVKDAYLVELLRI 244
Query: 299 M---EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
D G + +IF +TC++C LLS+ L E+ + VALH+ Q+QRL+AL+RFKS +
Sbjct: 245 FISENDQG--TVMIFTNTCKNCQLLSITLNEVGMDNVALHAMIPQAQRLAALNRFKSNRV 302
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVASRGLDIP V L++N+++PR P++YVHRVGRTARAGR G AV+ VT D+ L
Sbjct: 303 KILIATDVASRGLDIPNVQLIINHNVPRIPKEYVHRVGRTARAGRQGRAVTLVTPYDLKL 362
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL-MDDGFEEKAKERKKQ 470
+ IE ++ +L E + ++EV T V + A MKL D FE+K KK+
Sbjct: 363 LLAIEELIKTKLTECKVNDKEVAEIFTEVSVTKSEAYMKLDATDFFEKKMINLKKK 418
>gi|322796322|gb|EFZ18887.1| hypothetical protein SINV_00745 [Solenopsis invicta]
Length = 420
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 284/416 (68%), Gaps = 9/416 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L L W + CK +G+++PTP+Q +CIP+IL G+D +G A+TGSGKT AFALPIL +
Sbjct: 8 FLHLKLNSWLLAQCKSMGLKKPTPIQENCIPRILMGEDCIGCAKTGSGKTLAFALPILQK 67
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L EDPYG+ ALV+TPTRELA+Q+A+QF A+G ++L+ V+VGGMD++ Q L RPH+
Sbjct: 68 LCEDPYGIFALVLTPTRELAFQIADQFAAIGKVINLKKCVIVGGMDMMIQGLELSKRPHI 127
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V+ATPGR L + D FS + KFLVLDEADR+L F+++L+ +F LPK +Q
Sbjct: 128 VVATPGR----LADHLDSCNTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAVLPKQKQI 183
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
L FSATMT L + +++ NK + ++ + G TV+ L Q+Y+ PK+V D YL+ V+
Sbjct: 184 LFFSATMTDTLDKVKKMACNKVFTWQEKDDAGIATVKELDQRYVLCPKDVLDSYLVEVIR 243
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
I IF TC++C LLS+ L ++ VALH+ Q +RL AL++FKS
Sbjct: 244 TFRTTNKNGCIMIFTDTCKNCQLLSMTLNDVGFTNVALHAMLKQKERLVALNKFKSNHIQ 303
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+AT+VA+RGLDIP V LV+N+ IP P++Y+HRVGRTARAG G+A+S +T +D+ L+
Sbjct: 304 ILIATNVAARGLDIPAVQLVVNHVIPNVPKEYIHRVGRTARAGENGMAISLITPHDIKLL 363
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
H IE +G +L E++ ++E+++ +T++ A+R A +KL + F EK K++KL
Sbjct: 364 HAIEDAIGTKLTEYKVDDKEIVTILTQISVAKREAEIKLDETDFYEKKMINKQKKL 419
>gi|115532546|ref|NP_001040788.1| Protein H20J04.4, isoform a [Caenorhabditis elegans]
gi|351065689|emb|CCD61679.1| Protein H20J04.4, isoform a [Caenorhabditis elegans]
Length = 488
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/409 (47%), Positives = 280/409 (68%), Gaps = 6/409 (1%)
Query: 48 NPDPNSTTTDSTVT--FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
P P + D+ T F+ LG+ W Q + + ++ TPVQ CIPKILEG D+LG A+
Sbjct: 75 TPKPIQISEDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCAR 134
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TG+GKT AFA+PIL +L+ DPYG+ AL++TPTRELA+Q+AEQF ALG + L+C V+VGG
Sbjct: 135 TGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGG 194
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD-IPPVFSRTKFLVLDEADRVLDVGFEE 224
L+ QA+ L RPHVV+ATPGR+ L+E DPD I VF + +F VLDEADR+L+ + +
Sbjct: 195 RSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYND 254
Query: 225 ELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYE--AYEGFKTVETLKQQYIF 282
+L+ +F+ + + RQTLL SAT+T+++ L +S K YF+E + TV+ L+Q+Y+
Sbjct: 255 QLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVV 314
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341
P VKD YL++V+ + +S++ IF TCR C L+ + E L +LHS Q
Sbjct: 315 CPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQK 374
Query: 342 QRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG 401
QRL+AL F+S +++ TDVASRGLDIP VDLV+N+++P+ P+ Y+HRVGR+ARAGR
Sbjct: 375 QRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRF 434
Query: 402 GLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRV 450
G A+SFVTQ DV+L+ +E V+GK+L+E + K Q +I + K+ R+
Sbjct: 435 GSALSFVTQYDVELLQAVEQVIGKKLDELKVKIQTFRKNIWKTQKSTRI 483
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/429 (47%), Positives = 287/429 (66%), Gaps = 6/429 (1%)
Query: 30 EPEPESKNAKTTQLEKFTNPD-PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
+ E E++ A+ + + D + T D +T+ LGL E Q C EL R P+ +Q
Sbjct: 37 DNEEENEVAQNGEYDPSKGSDREDDTAEDQKLTWKDLGLNETLCQACDELKWRSPSKIQR 96
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
IP L+GKDV+GLA+TGSGKT AFALPILH L E+P ALV+TPTRELA+Q+ EQF
Sbjct: 97 EAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQF 156
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+ALGSG+ ++C VVVGGMD++ Q L +PH++IATPGR+ LE K+
Sbjct: 157 EALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKY 214
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE 268
LV+DEADR+L++ FE EL + + LP+ R+T LFSATMT ++ L S E
Sbjct: 215 LVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN 274
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
++TVE L+Q Y+FIP KDVYL+H+L+ D+ S +IF STC + +L+L L
Sbjct: 275 KYQTVEQLQQSYLFIPVKYKDVYLVHILN---DLAGNSFMIFCSTCNNTVKTALMLRALG 331
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
A+ LH SQ++RL+AL++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY
Sbjct: 332 LAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDY 391
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+HRVGRTARAGR G A++ VTQ D++L IE ++GKQL ++C+E EV++ RV +A+
Sbjct: 392 IHRVGRTARAGRSGKAITLVTQYDIELYQRIEHLLGKQLPLYKCEEDEVMALQERVAEAQ 451
Query: 449 RVATMKLMD 457
R A ++L D
Sbjct: 452 RTAKLELKD 460
>gi|71896415|ref|NP_001026109.1| probable ATP-dependent RNA helicase DDX49 [Gallus gallus]
gi|53130312|emb|CAG31485.1| hypothetical protein RCJMB04_6o15 [Gallus gallus]
Length = 402
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/392 (50%), Positives = 270/392 (68%), Gaps = 6/392 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA W V+ +++G+ RPTPVQ CIP IL+G+D LG A+TGSGKTAAF LP+L
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ VVVGG+D++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + KFLVLDEADR+L+ G F +L V+ + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--LKKLKFLVLDEADRLLEQGCADFIADLEVILEAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L L L+ N+ +F+EA +TV+ L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF TC+ C +L+++L + +VALHS Q QR +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G++++ VTQ D+ L+H
Sbjct: 302 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARR 449
IE + +L+EF +E+ VL +T V RR
Sbjct: 362 AIEEEIKLKLQEFSVEEKLVLDILTHVNVTRR 393
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/406 (48%), Positives = 277/406 (68%), Gaps = 5/406 (1%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+ T D +T+ LGL E Q C EL + P+ +Q IP L+GKDV+GLA+TGSGKT
Sbjct: 61 DDTADDQKLTWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKT 120
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AFALPILH L E+P ALV+TPTRELA+Q+ EQF+ALGSG+ ++C VVVGGMD++ Q
Sbjct: 121 GAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQ 180
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L +PH++IATPGR+ LE K+LV+DEADR+L++ FE EL + +
Sbjct: 181 GLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVELDKILK 238
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP+ R+T LFSATMT ++ L S E ++TVE L+Q Y+FIP KDVY
Sbjct: 239 VLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 298
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+H+L+++ S +IF STC + +L+L L A+ LH SQ++RL+AL++FK
Sbjct: 299 LVHILNELSG---NSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFK 355
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++ V+Q
Sbjct: 356 AKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQY 415
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
D++L IE ++GKQL ++C+E EV++ RV +A+R A ++L D
Sbjct: 416 DIELYQRIEHLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKD 461
>gi|325193328|emb|CCA27668.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325193516|emb|CCA27823.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 502
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/461 (44%), Positives = 292/461 (63%), Gaps = 40/461 (8%)
Query: 48 NPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
+ D + TTT +F LG+ W V+ C ++GM PT VQ HCIP IL+G++VLG+AQTG
Sbjct: 32 HKDESRTTTSIAESFESLGINSWLVKKCSQIGMTTPTTVQQHCIPAILDGRNVLGVAQTG 91
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
SGKTAAFALPILH L+ DPYG A+++TPTRELA+Q+A+Q G+ +RC V+VGGMD
Sbjct: 92 SGKTAAFALPILHSLSMDPYGPFAVILTPTRELAFQIADQMNIFGTFTGVRCAVIVGGMD 151
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
+L Q L +PH++IATPGR+ L PD P + S KFLVLDEADR+L+ F+ +L
Sbjct: 152 MLEQKMKLQQQPHIIIATPGRLHDHLMH-PDAPNL-SLVKFLVLDEADRLLEQSFKSDLT 209
Query: 228 VVFQCLP--KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285
V LP +NRQTL F+AT+T +L +++ + ++ ++ KT + L+Q Y+F P+
Sbjct: 210 FVLGKLPPAENRQTLYFTATLTEELN---QVAGSDSFRFDGTALIKTRDALEQYYLFFPQ 266
Query: 286 NVKDVYLMHVLSKM-------------------------------EDMGIRSAIIFVSTC 314
+K YLM++L + +S I+FVS C
Sbjct: 267 QIKMTYLMYLLLSLTPQVEETNRQKQRYSKHSAKSLEKTLKSLEATAQAAKSVIVFVSKC 326
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
++C L+ + EL V LHS SQS+RL+AL +F SG A IL++TDVASRGLDIPTVD
Sbjct: 327 QTCELIGEVTRELGLNCVTLHSIMSQSRRLAALGKFTSGLAPILISTDVASRGLDIPTVD 386
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE--C 432
+V+ +D+PR Y+HRVGR R G G ++S VTQ+D+ L+ +EA VGK+++ +E
Sbjct: 387 VVIQFDLPRVASTYIHRVGRACRTGGRGRSISLVTQHDIALLQHLEAHVGKKMDNYEVFA 446
Query: 433 KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
KE++VL + V A R A +KL + GFE+K +ERK ++ K
Sbjct: 447 KEEQVLKLLNDVSVATRCAKLKLYERGFEDKVRERKARRSK 487
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/428 (46%), Positives = 287/428 (67%), Gaps = 6/428 (1%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTH 89
E + E+ + +L + P+ ++ + +T+ LGL E Q C EL + P+ +Q
Sbjct: 36 EEDNEAAQSGEDKLSNGSEPEDDAAE-EQKLTWKDLGLNEALCQACDELKWKAPSKIQRE 94
Query: 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149
IP L+GKDV+GLA+TGSGKT AFALPILH L E+P ALV+TPTRELA+Q+ EQF+
Sbjct: 95 AIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFE 154
Query: 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209
ALGSG+ ++C VVVGGMD++ Q L +PH++IATPGR+ LE K+L
Sbjct: 155 ALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYL 212
Query: 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG 269
V+DEADR+L++ FE EL + + LP+ R+T LFSATMT ++ L S E
Sbjct: 213 VMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKIEVSNK 272
Query: 270 FKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ 329
++TVE L+Q Y+FIP KDVYL+H+L+ ++ S +IF STC + +L+L L
Sbjct: 273 YQTVEQLQQSYLFIPVKYKDVYLVHILN---ELAGNSFMIFCSTCNNTVKTALMLRALGL 329
Query: 330 EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYV 389
A+ LH SQ++RL+AL++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+
Sbjct: 330 AAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYI 389
Query: 390 HRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR 449
HRVGRTARAGR G A++ V+Q D++L IE ++GKQL ++C+E EV++ RV +A+R
Sbjct: 390 HRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQR 449
Query: 450 VATMKLMD 457
A ++L D
Sbjct: 450 TAKLELKD 457
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/428 (46%), Positives = 287/428 (67%), Gaps = 6/428 (1%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTH 89
E + E+ + +L + P+ ++ + +T+ LGL E Q C EL + P+ +Q
Sbjct: 36 EEDNEAAQSGEDKLSNGSEPEDDAAE-EQKLTWKDLGLNEALCQACDELKWKAPSKIQRE 94
Query: 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149
IP L+GKDV+GLA+TGSGKT AFALPILH L E+P ALV+TPTRELA+Q+ EQF+
Sbjct: 95 AIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFE 154
Query: 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209
ALGSG+ ++C VVVGGMD++ Q L +PH++IATPGR+ LE K+L
Sbjct: 155 ALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYL 212
Query: 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG 269
V+DEADR+L++ FE EL + + LP+ R+T LFSATMT ++ L S E
Sbjct: 213 VMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNK 272
Query: 270 FKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ 329
++TVE L+Q Y+FIP KDVYL+H+L+ ++ S +IF STC + +L+L L
Sbjct: 273 YQTVEQLQQSYLFIPVKYKDVYLVHILN---ELAGNSFMIFCSTCNNTVKTALMLRALGL 329
Query: 330 EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYV 389
A+ LH SQ++RL+AL++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+
Sbjct: 330 AAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYI 389
Query: 390 HRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR 449
HRVGRTARAGR G A++ V+Q D++L IE ++GKQL ++C+E EV++ RV +A+R
Sbjct: 390 HRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQR 449
Query: 450 VATMKLMD 457
A ++L D
Sbjct: 450 TAKLELKD 457
>gi|339243587|ref|XP_003377719.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
gi|316973448|gb|EFV57036.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
Length = 563
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/429 (46%), Positives = 290/429 (67%), Gaps = 7/429 (1%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LGL+ W V+ C +G+ P+PVQ +CIP+IL GKD +G ++TG+GKT AFA+PI+ RL+E
Sbjct: 110 LGLSSWLVEQCAVMGIVEPSPVQLNCIPEILIGKDAIGCSKTGTGKTLAFAIPIIQRLSE 169
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
DPYG+ ALV+TP+RELA+Q+ EQF+ LG L LR +VVGG D++ QA + N+PH++IA
Sbjct: 170 DPYGIYALVLTPSRELAFQIGEQFQVLGKPLGLRTSIVVGGRDMIEQANEIANQPHILIA 229
Query: 185 TPGRI--KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLF 242
TPGR+ +L D + F + KF VLDEADR+LD ++ +L + + LPK RQTLLF
Sbjct: 230 TPGRLADHILSRSDENW---FHKIKFFVLDEADRLLDGQYDLQLETIIEKLPKERQTLLF 286
Query: 243 SATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDM 302
SAT+T L L ELS K +F++ TV+TL+Q+Y+ PK+VKD Y+ +V+ D
Sbjct: 287 SATITDALCRLQELSVKKPFFWQEQSCTVTVDTLEQRYVLCPKSVKDAYVTYVVKLFTDK 346
Query: 303 GIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+S++ IF +C C L+L+ +L + ALHS SQ +RLS+ + FKS Q IL+ T
Sbjct: 347 NPQSSVLIFSHSCYECQALTLMFADLGFKVGALHSMISQRERLSSFNLFKSNQLKILICT 406
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLD+P VDLV+N++IP + Y+HRVGR+ARAGR G AV+F+TQ D+ L+ IE
Sbjct: 407 DVASRGLDLPFVDLVINHNIPAVAKTYIHRVGRSARAGRSGRAVTFITQYDIALLQAIEK 466
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGF-EEKAKERKKQKLKMLAEKGS 480
+ Q+ E + +++V + +T V A+R A +K+ + F E +A R+K+ + +
Sbjct: 467 AINCQMNELKVNDKKVSNYVTEVLVAKREAILKMDEQHFGERRAINRRKEMILSGLDPED 526
Query: 481 LKKRSEKRK 489
+ + E+RK
Sbjct: 527 VDRFLERRK 535
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/411 (48%), Positives = 278/411 (67%), Gaps = 5/411 (1%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
+ D + T D +T+ LGL + Q C EL + P+ +Q IP L+GKDV+GLA+T
Sbjct: 56 SESDTAAPTEDQKLTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAET 115
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKT AFALPILH L E P ALV+TPTRELA+Q+ EQF+ALGSG+ ++C VVVGGM
Sbjct: 116 GSGKTGAFALPILHALLESPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGM 175
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D++ Q L +PH++IATPGR+ LE K+LV+DEADR+L++ FE EL
Sbjct: 176 DMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVEL 233
Query: 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + LP+ R+T LFSATMT ++ L S E ++TVE L+Q Y+FIP
Sbjct: 234 DKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVK 293
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KDVYL+H+L+ ++ S +IF STC + +L+L L A+ LH SQ++RL+A
Sbjct: 294 YKDVYLVHILN---ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAA 350
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++
Sbjct: 351 LNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 410
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
V+Q D++L IE ++GKQL ++C+E EV++ RV +A+R A ++L D
Sbjct: 411 IVSQYDIELYQRIEHLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKD 461
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/411 (48%), Positives = 278/411 (67%), Gaps = 5/411 (1%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
+ D + T D +T+ LGL + Q C EL + P+ +Q IP L+GKDV+GLA+T
Sbjct: 56 SESDTAAPTEDQKLTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAET 115
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKT AFALPILH L E P ALV+TPTRELA+Q+ EQF+ALGSG+ ++C VVVGGM
Sbjct: 116 GSGKTGAFALPILHALLESPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGM 175
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D++ Q L +PH++IATPGR+ LE K+LV+DEADR+L++ FE EL
Sbjct: 176 DMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVEL 233
Query: 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + LP+ R+T LFSATMT ++ L S E ++TVE L+Q Y+FIP
Sbjct: 234 DKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVK 293
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KDVYL+H+L+ ++ S +IF STC + +L+L L A+ LH SQ++RL+A
Sbjct: 294 YKDVYLVHILN---ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAA 350
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++
Sbjct: 351 LNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 410
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
V+Q D++L IE ++GKQL ++C+E EV++ RV +A+R A ++L D
Sbjct: 411 IVSQYDIELYQRIEHLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKD 461
>gi|145342427|ref|XP_001416184.1| Ddx49-related DEAD box helicase superfamily II protein
[Ostreococcus lucimarinus CCE9901]
gi|144576409|gb|ABO94477.1| Ddx49-related DEAD box helicase superfamily II protein
[Ostreococcus lucimarinus CCE9901]
Length = 417
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/412 (48%), Positives = 270/412 (65%), Gaps = 1/412 (0%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL+ ++ ++LG P+ VQ CIP IL+G+DV+G+A TGSGKTAAFALP++H
Sbjct: 3 SFDKLGLSGVLLRNIRQLGFTEPSSVQKSCIPPILQGRDVIGIANTGSGKTAAFALPVVH 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ DP+GV AL ++PTRELAYQ+AEQF G+ LRCEVV+GG DLL QA SL RPH
Sbjct: 63 VLSVDPHGVFALCLSPTRELAYQIAEQFAVFSVGMSLRCEVVIGGEDLLRQASSLSKRPH 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ATPGR+ D F R KFL+LDEADR+LD FE ELR + LP+ RQTL
Sbjct: 123 IVVATPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTNLPQKRQTL 182
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
+FSAT+T + L L +A++YE T Q Y F+P+ VKD YL+HVL ++
Sbjct: 183 MFSATITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQYYCFMPEKVKDTYLVHVLRELV 242
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
A+IF T + C ++S +L L A +LH+ K Q R S L+ FKS IL+A
Sbjct: 243 SSKSTRAMIFCPTVQKCEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKSTMVKILVA 302
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLD+P V+LV+NYDIP PR Y+HR+GRTAR G A+S VTQ DV I +IE
Sbjct: 303 TDVAARGLDLPDVELVVNYDIPSDPRQYIHRIGRTARFHATGQAISLVTQYDVGKIKKIE 362
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD-DGFEEKAKERKKQK 471
+G +LEEF +E +V + V+ +R++A + + GF+E+ +KK++
Sbjct: 363 KHLGHELEEFHVQEADVNKLVGEVFASRKMAKLHMASPGGFDEQLSAKKKRQ 414
>gi|281202503|gb|EFA76705.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1173
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/429 (45%), Positives = 284/429 (66%), Gaps = 5/429 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA W + CK+LG + P+ +Q + IP IL G+D+L A+TG GKTAAFALPIL
Sbjct: 662 FEDLGLAPWLLACCKQLGFKAPSNIQYNTIPAILSGRDILASAKTGQGKTAAFALPILSA 721
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ A+V+TPTRELA Q+ EQF+ALGS +++ C VV+GG+D + Q+ L RPH+
Sbjct: 722 LSEDPYGIFAVVLTPTRELAVQIGEQFRALGSAINVNCCVVIGGIDNVQQSLILDKRPHI 781
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ATPGR+ L + F R FLVLDEADR+L FE E++ + + LP QTLL
Sbjct: 782 IVATPGRLAAHLNNGMKLALQFCR--FLVLDEADRMLGPDFELEVQKIVEHLPPKIQTLL 839
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
+SATMT+ + L + Y +E + TVETL Q Y+F+P KD +L+++L K +
Sbjct: 840 YSATMTNSNKKLESIPIKNPYIFEDNNKYDTVETLSQYYVFMPAQAKDCHLVYLLKKHDS 899
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
S I+F++ CR+ + +L +LD ++V+LHSF SQ RL+AL +FKSG+ +L+AT
Sbjct: 900 ---SSVIVFINNCRTVEAVKGMLNKLDIKSVSLHSFLSQKDRLNALKQFKSGKIRVLIAT 956
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLDIP V +V+NY + +DY+HRVGRTAR GR G A+SFVT +DV+L+ +EA
Sbjct: 957 DVASRGLDIPDVQMVINYKLSNSSKDYIHRVGRTARFGRSGRAISFVTPHDVELVKNVEA 1016
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSL 481
+GKQLE + +++ V + AR++ + L + F K KER+ ++ ++ +
Sbjct: 1017 AIGKQLELYTTEDEAVYRHLGEASTARKLVEIYLDEIEFGVKEKERRDERNELTRQMLDE 1076
Query: 482 KKRSEKRKK 490
K+R+ K
Sbjct: 1077 KERNTNNNK 1085
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/412 (47%), Positives = 283/412 (68%), Gaps = 5/412 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LG+ + + C++L + PT +Q IP LEGKD++GLA+TGSGKTAAFALPIL
Sbjct: 18 ITWKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPIL 77
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E+P AL++TPTRELA+Q++EQF+ALGS + ++C V+VGGMD+++QA L +P
Sbjct: 78 QALLENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKP 137
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P+ R+T
Sbjct: 138 HILIATPGRLVDHLENTKGFS--LRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKT 195
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN-- 253
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ S +IF +TC + +LLL L AV LH SQ++R++AL +FK+ +IL+
Sbjct: 254 -ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILI 312
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L I
Sbjct: 313 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI 372
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
E ++ KQL + +E+EV+ RV +ARR+ M++ D +K +RKK++
Sbjct: 373 EQLISKQLPLYATQEEEVMVLEERVAEARRIVKMEMKDIEDSKKVGKRKKRQ 424
>gi|308484167|ref|XP_003104284.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
gi|308258253|gb|EFP02206.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
Length = 572
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/452 (43%), Positives = 298/452 (65%), Gaps = 14/452 (3%)
Query: 21 TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGM 80
TR P P+ S+N +T + + N TT F+ LG++ W +Q + + +
Sbjct: 8 TRKSPNFSPK---TSENFQTNAPQPVQISEENMTTKK----FSELGVSSWIIQQLQTMHI 60
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
TPVQ CIPKIL G D+LG A+TG+GKT AFA+PIL +L+ DPYG+ AL++TPTREL
Sbjct: 61 STATPVQAACIPKILSGSDILGCARTGTGKTLAFAIPILQKLSIDPYGIYALILTPTREL 120
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD-I 199
A+Q+A+QF A+G + L+C V+VGG L+ QA+ L +RPH+V+ATPGR+ L+ D + I
Sbjct: 121 AFQIADQFSAVGKPITLKCSVIVGGRSLIHQARELSDRPHIVVATPGRLADLINSDAEII 180
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSAN 259
VF + +F VLDEADR+L+ + ++L+ +F+ +P RQTLL SAT+T+++ L ++S
Sbjct: 181 AKVFKKIQFFVLDEADRMLEGQYNDQLKPIFEAIPAKRQTLLLSATITNNINMLHKVSTR 240
Query: 260 KAYFYE--AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRS 316
K YF+E + + TV+ L+Q+++ P VKD YL++V+ + +S++ IF TCR
Sbjct: 241 KPYFFEDKSKDAESTVDRLEQKFVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRE 300
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
C L+ + E L +LHS Q QRL+AL F+S +++ TDVASRGLDIP VDLV
Sbjct: 301 CQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLNVIICTDVASRGLDIPHVDLV 360
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
+N+++P+ + Y+HRVGR+ARAGR G A+SFVTQ DV+L+ +E +GK+LEE + + E
Sbjct: 361 VNHNVPQCAKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQTIGKKLEELKIQNSE 420
Query: 437 VLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
++ KAR++ T K+ + ++ +K R+
Sbjct: 421 KFD--SKASKARQI-TRKIWKNSIQKASKARQ 449
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/426 (47%), Positives = 286/426 (67%), Gaps = 8/426 (1%)
Query: 32 EPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCI 91
E +S+ A + + +K + D + +T+ LGL E Q C EL + P+ +Q I
Sbjct: 36 EGDSEAALSGEDDKGSEDD---AAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAI 92
Query: 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151
P L+GKDV+GLA+TGSGKT AFALPILH L E+P ALV+TPTRELA+Q+ EQF+AL
Sbjct: 93 PVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEAL 152
Query: 152 GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211
GSG+ ++C VVVGGMD++ Q L +PH++IATPGR+ LE K+LV+
Sbjct: 153 GSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYLVM 210
Query: 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK 271
DEADR+L++ FE EL + + LP+ R+T LFSATMT ++ L S E ++
Sbjct: 211 DEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQ 270
Query: 272 TVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEA 331
TVE L+Q Y+FIP KDVYL+H+L+ ++ S +IF STC + +L+L L A
Sbjct: 271 TVEQLQQSYLFIPVKYKDVYLVHILN---ELAGNSFMIFCSTCNNTVKTALMLRALGLAA 327
Query: 332 VALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHR 391
+ LH SQ++RL+AL++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HR
Sbjct: 328 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 387
Query: 392 VGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
VGRTARAGR G A++ V+Q D++L IE ++GKQL ++C+E EV++ RV +A+R A
Sbjct: 388 VGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQRTA 447
Query: 452 TMKLMD 457
++L D
Sbjct: 448 KLELKD 453
>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
Length = 501
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/425 (46%), Positives = 287/425 (67%), Gaps = 14/425 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA W +++CK+L + P+ +Q + IP+I+ G+D++ A+TGSGKTA+FA+PIL+
Sbjct: 7 FESLGLAPWLIRSCKQLNFKNPSNIQYNTIPEIINGRDIIASAKTGSGKTASFAIPILNL 66
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYGV A+V+TPTRELA Q+AEQF A+G+ ++++ V+GG+D + QA L RPH+
Sbjct: 67 LSEDPYGVFAVVLTPTRELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQALILDKRPHI 126
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKNRQT 239
++ATPGR+ L I F KFLVLDEADR+L FE E+ + + L P RQT
Sbjct: 127 IVATPGRLASHLTNGLKIALKF--CKFLVLDEADRLLGEDFELEIASILEYLPPPTQRQT 184
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT++L+ L +S N + +E + TV+TLKQ+YI++P KD YL+++L K
Sbjct: 185 LLFSATMTNNLKKLESISLNSPFIFEDNSKYDTVDTLKQEYIYMPAQAKDCYLVYLLKK- 243
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+G +S I+F++ C S + +L +LD AV+LHSF Q RLSAL FKSG+ +L+
Sbjct: 244 -HIG-QSVIVFINNCYSVEAVKGMLNKLDIPAVSLHSFLDQKARLSALKVFKSGKVKVLI 301
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP V++V+NY + +DY+HRVGRTAR G+ G A+SF+T +DV LI I
Sbjct: 302 ATDVASRGLDIPDVEMVINYKLSNSSKDYIHRVGRTARFGKSGRAISFITPHDVQLIKNI 361
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKG 479
E V+ K+LE ++ + EV + AR++ + L + F K KER+ AE+
Sbjct: 362 ELVIKKELELYKTDDDEVFRHLKESSTARKIVEVHLDEIEFGVKQKERR-------AERN 414
Query: 480 SLKKR 484
L+K+
Sbjct: 415 ELQKQ 419
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/426 (47%), Positives = 286/426 (67%), Gaps = 8/426 (1%)
Query: 32 EPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCI 91
E +S+ A + + +K + D + +T+ LGL E Q C EL + P+ +Q I
Sbjct: 36 EGDSEAALSGEDDKGSEDD---AAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAI 92
Query: 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151
P L+GKDV+GLA+TGSGKT AFALPILH L E+P ALV+TPTRELA+Q+ EQF+AL
Sbjct: 93 PVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEAL 152
Query: 152 GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211
GSG+ ++C VVVGGMD++ Q L +PH++IATPGR+ LE K+LV+
Sbjct: 153 GSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYLVM 210
Query: 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK 271
DEADR+L++ FE EL + + LP+ R+T LFSATMT ++ L S E ++
Sbjct: 211 DEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQ 270
Query: 272 TVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEA 331
TVE L+Q Y+FIP KDVYL+H+L+ ++ S +IF STC + +L+L L A
Sbjct: 271 TVEQLQQSYLFIPVKYKDVYLVHILN---ELAGNSFMIFCSTCNNTVKTALMLRALGLAA 327
Query: 332 VALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHR 391
+ LH SQ++RL+AL++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HR
Sbjct: 328 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 387
Query: 392 VGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
VGRTARAGR G A++ V+Q D++L IE ++GKQL ++C+E EV++ RV +A+R A
Sbjct: 388 VGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQRTA 447
Query: 452 TMKLMD 457
++L D
Sbjct: 448 KLELKD 453
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/415 (47%), Positives = 281/415 (67%), Gaps = 9/415 (2%)
Query: 47 TNPDPNSTT----TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLG 102
++PD + T + T+ LGL E + C+EL + P+ +Q IP L+GKD++G
Sbjct: 42 SDPDESEETEAPKCEQLQTWKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIG 101
Query: 103 LAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
LA+TGSGKT AFALPILH L E+P ALV+TPTRELA+Q+ EQF+ALGSG+ ++C VV
Sbjct: 102 LAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVV 161
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
VGGMD++ Q L +PH++IATPGR+ LE K+LV+DEADR+L++ F
Sbjct: 162 VGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDF 219
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF 282
E EL + + LP+ R+T LFSATMT ++ L S E ++TV+ L+Q YIF
Sbjct: 220 EVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIF 279
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQ 342
IP KDVYL+H+L+ ++ S +IF STC + +L+L L A+ LH SQ++
Sbjct: 280 IPVKYKDVYLVHILN---ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNK 336
Query: 343 RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402
RL+AL++FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G
Sbjct: 337 RLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG 396
Query: 403 LAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
A++ VTQ D++L IE ++GKQL ++C+E EV++ RV +A+R A ++L D
Sbjct: 397 QAITMVTQYDIELYQRIEQLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKD 451
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 283/418 (67%), Gaps = 9/418 (2%)
Query: 44 EKFTNPDPNSTTTDS----TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKD 99
EK + T D +T+ LG+ + Q C++L + PT +Q IP ++GKD
Sbjct: 4 EKIAEVSGDETAADEKNTENLTWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQGKD 63
Query: 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159
V+GLA+TGSGKTAAFALPIL L E+P AL++TPTRELA+Q++EQF+ALG+ + ++C
Sbjct: 64 VIGLAETGSGKTAAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKC 123
Query: 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD 219
V+VGGMD++TQ+ L +PH++IATPGR+ LE KFLV+DEADR+L+
Sbjct: 124 VVIVGGMDMMTQSLMLAKKPHIIIATPGRLVDHLENTKGFN--LRSLKFLVMDEADRILN 181
Query: 220 VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQ 279
+ FE E+ + + +P+ R+TLLFSATMT +Q L S E ++TVE L+Q
Sbjct: 182 MDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQY 241
Query: 280 YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
Y+FIP KDVYL+H+L+++ S +IF STC + +LLL L AV LH S
Sbjct: 242 YVFIPVKFKDVYLVHILNELSG---NSFMIFCSTCNNTMRTALLLRSLGFMAVPLHGQMS 298
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
Q++R++AL +FK+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAG
Sbjct: 299 QNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAG 358
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
R G++V+FVTQ DV+L IE ++GKQL ++ +EQEV+ RV +A+R+ M++ D
Sbjct: 359 RSGISVTFVTQYDVELYQRIEQLIGKQLPIYKTEEQEVMVLQERVAEAQRMVKMEMKD 416
>gi|307195490|gb|EFN77376.1| Probable ATP-dependent RNA helicase DDX49 [Harpegnathos saltator]
Length = 444
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/403 (47%), Positives = 282/403 (69%), Gaps = 9/403 (2%)
Query: 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139
+++PT +Q +CIP+IL G+D +G A+TGSGKT AFALPIL +L EDPYG+ ALV+TPTRE
Sbjct: 1 LKQPTAIQQNCIPRILGGEDCIGCAKTGSGKTLAFALPILQKLCEDPYGIFALVLTPTRE 60
Query: 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI 199
LA+Q+A+QF A+G ++L+ V+VGGMD++ Q L RPH+V+ATPGR L + D
Sbjct: 61 LAFQIADQFAAIGKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATPGR----LADHLDS 116
Query: 200 PPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS 257
FS R KFLVLDEADR+L F+++L+ +F LP+ +Q LLFSATMT+DL + ++
Sbjct: 117 CNTFSLKRIKFLVLDEADRLLGGHFDKQLKTIFATLPEQKQVLLFSATMTNDLDNVKSVA 176
Query: 258 ANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTC 314
+NK + +E + G TV+ L Q+Y+ PK+V D YL+ V+ +I +F TC
Sbjct: 177 SNKVFIWEEKDDAGIATVKELDQRYVLCPKDVLDSYLVEVIRTFCATNKNGSIMVFTDTC 236
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
++C LLS+ L ++ VALH+ Q +RL+AL++FKS IL+ATDVA+RGLDI V+
Sbjct: 237 KNCQLLSMALNDVGFTNVALHAMIKQKERLAALNKFKSNHVQILIATDVAARGLDIHEVE 296
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
LV+N+ IP P++Y+HRVGRTARAGR G+AVS +T +DV L+H IE +G +L E++ +
Sbjct: 297 LVVNHVIPNVPKEYIHRVGRTARAGRNGMAVSLITPHDVKLLHAIEDAIGTKLTEYKVDD 356
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
+E+++ +T++ A+R A +KL + F EK K++KL + E
Sbjct: 357 KEIVTILTQISVAKREAEIKLDETDFFEKKMINKRKKLILEGE 399
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/401 (48%), Positives = 276/401 (68%), Gaps = 5/401 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D +T+ LGL + + C+EL + P+ +Q IP L+GKDV+GLA+TGSGKT AFAL
Sbjct: 61 DQPLTWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFAL 120
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PILH L E+P ALV+TPTRELA+Q+ EQF+ALGSG+ ++C VVVGGMD++ Q L
Sbjct: 121 PILHALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 180
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE EL + + LP+
Sbjct: 181 KKPHIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE 238
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT ++ L S E ++TV+ L+Q YIFIP KDVYL+H+L
Sbjct: 239 RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHIL 298
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ ++ S +IF STC + +L+L L A+ LH SQ++RL+AL++FK+ +
Sbjct: 299 N---ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRS 355
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++ VTQ D++L
Sbjct: 356 ILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELY 415
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE ++GKQL ++C+E EV++ RV +A+R A ++L D
Sbjct: 416 QRIEQLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKD 456
>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
30864]
Length = 594
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 276/422 (65%), Gaps = 9/422 (2%)
Query: 46 FTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
T P ++ TF LG+ V+ C +G + PTP+Q IP L G+D++GLA+
Sbjct: 132 ITAPAGEEQAEEAPTTFQALGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGRDIIGLAE 191
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TGSGKTA+FALP+L +L E P + AL++TPTRELAYQ++EQF+ALGS + ++C V+VGG
Sbjct: 192 TGSGKTASFALPVLQKLLEKPQPLFALILTPTRELAYQISEQFEALGSTIGVKCCVIVGG 251
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225
MD+ TQA +L +PH++IATPGRI LE KFL++DEADR+L++ FEEE
Sbjct: 252 MDMTTQAIALSKKPHILIATPGRIVDHLEN------TKGYLKFLIMDEADRILNMDFEEE 305
Query: 226 LRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285
+ + + +PK R T L+SATMTS + L S E ++TV TL QQY+FIP
Sbjct: 306 VDKILKAIPKERNTYLYSATMTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYLFIPA 365
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
KD YL + L+++ S IIF TC + ++L+L L A+ LH +Q +RL
Sbjct: 366 RFKDCYLTYALNQLAG---NSTIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLG 422
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
AL++FK +IL+ATDVASRGLDIP VDLV+NYDIP + +DY+HRVGRTARAGR G ++
Sbjct: 423 ALNKFKEQSRSILVATDVASRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSI 482
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
+ VTQ DV+L IE ++ K++E +E +E++VL + R +A+R+A ++ D+ K
Sbjct: 483 TMVTQYDVELFQRIEQLINKKMELYESEEEQVLMLLERTSEAQRMAITQMRDENDPRNGK 542
Query: 466 ER 467
R
Sbjct: 543 RR 544
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/412 (47%), Positives = 283/412 (68%), Gaps = 5/412 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LG+ + + C++L + PT +Q IP LEGKD++GLA+TGSGKTAAFALPIL
Sbjct: 18 ITWKDLGIVDILHKACEDLKWKSPTKIQCEAIPLALEGKDIIGLAETGSGKTAAFALPIL 77
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E+P AL++TPTRELA+Q++EQF+ALGS + ++C V+VGGMD+++QA L +P
Sbjct: 78 QALLENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKP 137
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P+ R+T
Sbjct: 138 HILIATPGRLVDHLENTKGFS--LRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKT 195
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN-- 253
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ S +IF +TC + +LLL L AV LH SQ++R++AL +FK+ +IL+
Sbjct: 254 -ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILI 312
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L I
Sbjct: 313 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI 372
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
E ++ KQL + +E+EV+ RV +ARR+ M++ D +K +RKK++
Sbjct: 373 EQLISKQLPLYPTQEEEVMVLEERVAEARRIVKMEMKDIEDSKKIGKRKKRQ 424
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/411 (47%), Positives = 279/411 (67%), Gaps = 5/411 (1%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
N + N+ + + ++ +GL + + C+ L + P+ +Q IP L+GKDV+GLA+T
Sbjct: 44 NNKNGNADSEEKQASWEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLAET 103
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKT AFALPIL L E+P A+++TPTRELAYQ++EQF+ALG+ + ++C V+VGGM
Sbjct: 104 GSGKTGAFALPILQALLENPQRYFAVILTPTRELAYQISEQFEALGASIGIKCCVIVGGM 163
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D+++QA L +PH++IATPGR+ LE K+LV+DEADR+L++ FE EL
Sbjct: 164 DMVSQALHLARKPHIIIATPGRLVDHLENTKGFN--LKAVKYLVMDEADRILNLDFEVEL 221
Query: 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + +P+ R+T LFSATMT ++ L S E ++TVE L Q YIFIP
Sbjct: 222 EKILKVIPRERRTFLFSATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYIFIPAK 281
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KDVYL+H+L+++ S +IF STC + +L+L L AV LH SQ++RL+A
Sbjct: 282 YKDVYLVHILNELAG---NSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAA 338
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++FK IL++TDVASRGLDIP VD+VLN+DIP + +DY+HRVGRTARAGR G AV+
Sbjct: 339 LNKFKGKNRQILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVT 398
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
FVTQ DV+L IE ++GK+L +F+C+E EV++ RV +A+R A ++L D
Sbjct: 399 FVTQYDVELYQRIEHLLGKKLPQFKCEEDEVMALQERVGEAQRTARLELKD 449
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/410 (49%), Positives = 283/410 (69%), Gaps = 7/410 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+ T TF LGL+E V+ C++LG + P +QT IP LEGKDV+GLAQTGSGKT AFA
Sbjct: 5 NEETKTFKDLGLSESLVEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFA 64
Query: 116 LPILHRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
LPILH L E P A V++PTRELA Q+AEQF+ALGS + ++C V+VGG+D++ Q+
Sbjct: 65 LPILHALLEAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSI 124
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
+ +PH+++ TPGR+ L+ SR K+LVLDEADR+L+ FEE L + Q +
Sbjct: 125 KIAKQPHIIVGTPGRVIDHLKHTKGFS--LSRLKYLVLDEADRLLNEDFEESLNEILQMI 182
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P+ R+T LFSATMT +Q L + EA + TV+TLKQQY F+P KD YL+
Sbjct: 183 PRERRTFLFSATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQYRFLPAKHKDCYLV 242
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
++L++M ++++F TC + LL+L+L L +A+ ++ SQS+RL AL++FKSG
Sbjct: 243 YILTEMAG---STSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSG 299
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ ILL TDVASRGLDIPTVD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q ++
Sbjct: 300 ECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEL 359
Query: 414 DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
+ +IE ++GK+L E+ +E+EVL RV +A+R+A MK+ + G ++K
Sbjct: 360 EWYIQIEKLIGKKLPEYPAQEEEVLLLEERVGEAKRLAVMKMKETGGKKK 409
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/402 (48%), Positives = 276/402 (68%), Gaps = 5/402 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
++ +T+ LGL E Q C+EL + P+ +Q IP L+GKDV+GLA+TGSGKT AFA
Sbjct: 51 SEQKLTWKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFA 110
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL L E+P ALV+TPTRELA+Q+ EQF+ALGSG+ ++C VVVGGMD++ Q L
Sbjct: 111 LPILQALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQL 170
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+PH++IATPGR+ LE K+LV+DEADR+L++ FE EL + + LP+
Sbjct: 171 AKKPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPR 228
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R+T LFSATMT ++ L S E ++TVE L+Q Y+FIP KDVYL+H+
Sbjct: 229 ERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHI 288
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+++ S +IF STC + +L+L L A+ LH SQ++RL+AL++FK+
Sbjct: 289 LNELAG---NSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNR 345
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++ V+Q D++L
Sbjct: 346 SILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIEL 405
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE ++GKQL ++C+E EV++ RV +A+R A ++L D
Sbjct: 406 YQRIEHLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKD 447
>gi|298709765|emb|CBJ31567.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 614
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/476 (46%), Positives = 296/476 (62%), Gaps = 46/476 (9%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
TF LGL +W + CK +G RRPTPVQ HCIP +LEGKDVLG A+TGSGKTAAFALPIL
Sbjct: 110 ATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKDVLGCAETGSGKTAAFALPIL 169
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
H L++DPYGV A+V+TPTRELA Q++EQF ALG+ + LR VV+GG+ +L Q+ +L RP
Sbjct: 170 HELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRP 229
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HVV+ATPGR++ L+ P ++ ++LVLDEADR+L FE EL + + LP +RQT
Sbjct: 230 HVVVATPGRLRDHLQG--PAAPALAKCRYLVLDEADRLLAPTFEGELPCIPKTLPNSRQT 287
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMTS+L+ L L+ Y+ + +TL QQY+F+P+ +K +++ L+ +
Sbjct: 288 LLFSATMTSNLEALEALALTNPVKYDLTKKATVPKTLTQQYLFMPRQMKTCFVVQTLNML 347
Query: 300 E---------------------------------------DMGIRSAIIFVSTCRSCHLL 320
D RS +IFVS CR C L
Sbjct: 348 ASDNLWSDPADRKTRKSRGGAGGLHDNPEADEGQEGTGDGDGRARSVMIFVSKCRKCQEL 407
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
S L EL + LHS Q +R +AL +FKS Q +L++TDVASRGLDIP VDLV+N+D
Sbjct: 408 SETLVELGVDCTPLHSLLGQRRRTAALGKFKSQQTKVLISTDVASRGLDIPAVDLVINFD 467
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLS 439
+PR DYVHRVGRTARAGR G AVS V+Q D++L+H IE G L E +E +VL
Sbjct: 468 VPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTPLGLCPEVEEDDVLK 527
Query: 440 DITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEK----RKKS 491
+ +V KA RVA M+LM+ GF+E+ K++ + KG + S RKK+
Sbjct: 528 LLNQVAKASRVARMRLMEQGFDERETSIKERNSRQRESKGEGRTHSSSNGGGRKKA 583
>gi|442762935|gb|JAA73626.1| Putative atp-dependent rna helicase, partial [Ixodes ricinus]
Length = 429
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/426 (47%), Positives = 285/426 (66%), Gaps = 16/426 (3%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTH 89
EPE +S++AK L+ + VTF LG+ + + C++L + PT +Q
Sbjct: 6 EPE-KSEDAKIVDLDD----------QEEEVTFKSLGIVDVLCEACEQLKWKSPTKIQKE 54
Query: 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149
IP L+GKDV+GLA+TGSGKT +FALPIL L E P + ALV+TPTRELA+Q++EQF+
Sbjct: 55 SIPLALQGKDVIGLAETGSGKTGSFALPILQALLETPQRLFALVLTPTRELAFQISEQFE 114
Query: 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209
ALG+G+ ++C VVVGG+D++TQA +L +PHVVIATPGR+ LE K+L
Sbjct: 115 ALGAGIGVKCAVVVGGIDMMTQALTLAKKPHVVIATPGRLVDHLENTKGFS--LKALKYL 172
Query: 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG 269
V+DEADR+L++ FEEE+ + + +P+ R T L+SATMT +Q L S E
Sbjct: 173 VMDEADRILNMDFEEEVDKILRVIPRERHTYLYSATMTKKVQKLQRASLKDPVKVEVSSK 232
Query: 270 FKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ 329
++TVE L Q Y+FIP KDVYL+H+L+++ S ++F STC + +LLL L
Sbjct: 233 YQTVEKLMQYYLFIPAKFKDVYLVHLLNELAG---NSFMVFCSTCSNTQRTALLLRNLGF 289
Query: 330 EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYV 389
A+ LH Q++RL AL++FKS +IL+ATDVASRGLDIP VD V+N+DIP + +DY+
Sbjct: 290 TAIPLHGQMGQAKRLGALNKFKSKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYI 349
Query: 390 HRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR 449
HRVGRTARAGR G A++FVTQ DV+L IE ++GK+L ++ E+EV+ + RV +A+R
Sbjct: 350 HRVGRTARAGRSGKAITFVTQYDVELYQRIEHLIGKKLPLYQTSEEEVMVLMERVTEAQR 409
Query: 450 VATMKL 455
A M+L
Sbjct: 410 FAKMEL 415
>gi|350398997|ref|XP_003485378.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
impatiens]
Length = 453
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/412 (47%), Positives = 284/412 (68%), Gaps = 5/412 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LG+ + +TC++L + PT +Q IP LEGKDV+GLA+TGSGKTAAFA+PIL
Sbjct: 18 LTWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDVIGLAETGSGKTAAFAIPIL 77
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E+P AL++TPTRELA+Q++EQF+ALGS + ++C V+VGGMD+++QA L +P
Sbjct: 78 QALLENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKP 137
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P+ R+T
Sbjct: 138 HILIATPGRLVDHLENTKGFN--LRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 195
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN-- 253
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ S +IF +TC + +LLL L AV LH SQ++R++AL +FK+ +IL+
Sbjct: 254 -ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILI 312
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L I
Sbjct: 313 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI 372
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
E ++ KQL + +E+EV+ RV +A+R+ M++ D +K +RKK++
Sbjct: 373 EQLISKQLPLYPTEEEEVMVLQERVAEAQRIVKMEMKDIEDSKKLGKRKKRQ 424
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 278/406 (68%), Gaps = 7/406 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + CK+L PT VQ IP L+G+DV+GLA+TGSGKTAAFALPIL L E
Sbjct: 68 GVVPVLCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEH 127
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALV+TPTRELAYQ+AEQF+ALG+ + ++ V+VGG+D++TQA L +PHV++AT
Sbjct: 128 PQRLFALVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIVAT 187
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+LV+DEADR+LD+ FE E+ + Q +P+ R+T LFSAT
Sbjct: 188 PGRLVDHLENTKGFS--LRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSAT 245
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT + L S E ++TV+ L+Q YIFIP+ KD YL+++L++M +
Sbjct: 246 MTKKVTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAG---K 302
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S I+F STC + +LLL L AV LH SQ++RL AL++FK+ +IL+ATDVAS
Sbjct: 303 SCIVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVAS 362
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VDLV+N+DIP + +DY+HRVGRTARAGR G++++FVTQ DV+L IE ++GK
Sbjct: 363 RGLDIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLGK 422
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
QL F+ +E EVLS + RV +A R+A M++ + E+K + KK+
Sbjct: 423 QLPLFKTEEPEVLSLLERVTEANRIAKMQVKE--LEDKKRTNKKRN 466
>gi|340719056|ref|XP_003397973.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
terrestris]
Length = 458
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/412 (47%), Positives = 284/412 (68%), Gaps = 5/412 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LG+ + +TC++L + PT +Q IP LEGKD++GLA+TGSGKTAAFA+PIL
Sbjct: 23 LTWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDIIGLAETGSGKTAAFAIPIL 82
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E+P AL++TPTRELA+Q++EQF+ALGS + ++C V+VGGMD+++QA L +P
Sbjct: 83 QALLENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAKKP 142
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P+ R+T
Sbjct: 143 HILIATPGRLVDHLENTKGFN--LRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 200
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT +Q L S E ++TVE L+Q Y+FIP KDVYL+H+L+
Sbjct: 201 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILN-- 258
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ S +IF +TC + +LLL L AV LH SQ++R++AL +FK+ +IL+
Sbjct: 259 -ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILI 317
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L I
Sbjct: 318 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI 377
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
E ++ KQL + +E+EV+ RV +A+R+ M++ D +K +RKK++
Sbjct: 378 EQLISKQLPLYPTEEEEVMVLQERVAEAQRIVKMEMKDIEDSKKLGKRKKRQ 429
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/412 (47%), Positives = 283/412 (68%), Gaps = 5/412 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LG+ + + C++L + PT +Q IP L+GKD++GLA+TGSGKTAAFALPIL
Sbjct: 18 MTWKDLGIVDVLCKACEDLKWKSPTKIQRESIPLTLQGKDIIGLAETGSGKTAAFALPIL 77
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E+P AL++TPTRELA+Q++EQF+ALGS + ++C V+VGGMD+++QA L +P
Sbjct: 78 QALLENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKP 137
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P+ R+T
Sbjct: 138 HILIATPGRLIDHLENTKGFN--LRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 195
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN-- 253
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ S +IF +TC + +LLL L AV LH SQ++R++AL +FK+ +IL+
Sbjct: 254 -ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILI 312
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L I
Sbjct: 313 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI 372
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
E ++ KQL + +E+EV+ RV +A+R+ M+L D +K+ +RKK +
Sbjct: 373 EQLISKQLPLYPTQEEEVMVLQERVAEAQRIVKMELKDIEENKKSGKRKKHQ 424
>gi|13161879|emb|CAC33024.1| hypothetical protein [Takifugu rubripes]
Length = 476
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/433 (45%), Positives = 291/433 (67%), Gaps = 12/433 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL++W ++ CK+LG+++ TPVQ +C+P IL+G D +G A+TGSGKTAAF LP+L +
Sbjct: 4 FSSLGLSDWLIKQCKQLGIQKATPVQENCVPAILQGSDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTR LAYQ+AEQF+ LG L L+ ++VGGM ++TQA L N+PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRSLAYQIAEQFRVLGKPLGLKDCIIVGGMGMVTQALELSNQPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
V+ATPGR+ + ++ +FLV+DEADR+L+ G F ++L + +P RQ
Sbjct: 124 VVATPGRLADHIRSSSTFS--LAKIQFLVMDEADRLLEQGCTDFTKDLETILTAVPAKRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T LQ L ++ NK +F+E+ +TVE L Q+YI P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLQELKHIAMNKPFFWESKSECRTVEELDQRYILTPEKVKDAYLVHLIQT 241
Query: 299 MEDM-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
D S IIF STC+ C +L+++L++ ++LHS Q QR + L +FK+ I
Sbjct: 242 FTDQHDDWSIIIFTSTCKYCQILTMMLQKFHFPTISLHSMMKQVQRFANLAKFKASVYKI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+R LDIPTV +V+ + P P+ Y+HRVGRTARAG G++++ VTQ D+ L+H
Sbjct: 302 LIATDVAARCLDIPTVQVVITNNTPGLPKIYIHRVGRTARAG-NGVSITLVTQYDIHLVH 360
Query: 418 EIEAVVGK-QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
IE + + +L+EF +E+EVL +T+V RR + L F+EK + K+++L +
Sbjct: 361 SIEEQIRETKLKEFPVEEKEVLKILTQVNVTRRECEI-LESTDFDEKKEINKRKQLIL-- 417
Query: 477 EKGSLKKRSEKRK 489
+G + KRK
Sbjct: 418 -EGKVPDLEAKRK 429
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/398 (48%), Positives = 274/398 (68%), Gaps = 5/398 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LGL+E + C EL + P+ +Q IP L+GKDV+GLA+TGSGKT AFALPIL
Sbjct: 57 LTWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 116
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
H L E+P ALV+TPTRELA+Q+ EQF+ALGSG+ ++C V+VGGMD++ Q L +P
Sbjct: 117 HALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKP 176
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE K+LV+DEADR+L++ FE EL + + LP+ R+T
Sbjct: 177 HIIIATPGRLVDHLENLKGFN--LKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 234
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT ++ L S E ++TV+ L+Q Y+FIP KDVYL+H+L+
Sbjct: 235 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKYKDVYLVHILN-- 292
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ S +IF STC + +L+L L A+ LH SQ++RL+AL++FK+ +IL+
Sbjct: 293 -ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILI 351
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++ V+Q D++L I
Sbjct: 352 STDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQRI 411
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
E ++GKQL ++C+E EV++ RV +A+R A ++ D
Sbjct: 412 EQLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLEFKD 449
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/398 (48%), Positives = 273/398 (68%), Gaps = 5/398 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LGL + Q C EL + P+ +Q IP L+GKDV+GLA+TGSGKT AFALPIL
Sbjct: 71 LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 130
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
H L E+P ALV+TPTRELA+Q+ EQF+ALGS + ++C VVVGGMD++ Q L +P
Sbjct: 131 HALLENPQRFFALVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKP 190
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE K+LV+DEADR+L++ FE EL + + LP+ R+T
Sbjct: 191 HIIIATPGRLVDHLENMKGFN--LKSIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 248
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT ++ L S E ++TVE L+Q Y+FIP KDVYL+H+L+
Sbjct: 249 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKYKDVYLVHILN-- 306
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ S +IF STC + +L+L L A+ LH SQ++RL+AL++FK+ +IL+
Sbjct: 307 -ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSILI 365
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+VLN+DIP + +DY+HRVGRTARAGR G A++ V+Q D++L I
Sbjct: 366 STDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 425
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
E ++GKQL ++C+E EV++ RV +A+R A ++L D
Sbjct: 426 EHLLGKQLPLYKCEEDEVMALQERVAEAQRTAKLELKD 463
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/407 (47%), Positives = 275/407 (67%), Gaps = 5/407 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D+ TF LG+ E + C +LG + PT +Q +P L+GKDV+GLA+TGSGKT AFAL
Sbjct: 35 DTPKTFKDLGVTEVLCEACDQLGWKSPTKIQIEAVPVALQGKDVIGLAETGSGKTGAFAL 94
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL L P + LV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D+++Q+ L
Sbjct: 95 PILQSLLASPQRLHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLA 154
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P+
Sbjct: 155 KKPHIVIATPGRLIDHLENTKGF--TLRALKFLVMDEADRILNMDFETEVDKILKVIPRE 212
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + + TV+ L+Q YIFIP KD YL+ +L
Sbjct: 213 RRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYLVSIL 272
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ D+ S IIF STC + ++LLL L A++LH SQ++RL AL++FKS +
Sbjct: 273 N---DLAGNSFIIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALNKFKSKSRS 329
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+LLATDVASRGLDIP VD V+NYDIP + +DY+HRVGRTARAGR G +++FVTQ DV+L
Sbjct: 330 VLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELF 389
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE+++GK+L F +E+EV+ + RV +A+R A +++ + G + K
Sbjct: 390 QRIESLIGKKLPAFPTQEEEVMMLVERVSEAQRFARLEMKEQGEKRK 436
>gi|328720638|ref|XP_001950474.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Acyrthosiphon pisum]
Length = 470
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/414 (47%), Positives = 279/414 (67%), Gaps = 3/414 (0%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+ F L L+++ K +G+ PT +Q +CIPKIL+G D +G A+TGSGKT AFALPIL
Sbjct: 1 MNFENLNLSKYLCDQLKAVGVNSPTEIQKNCIPKILDGIDCIGCAKTGSGKTLAFALPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L E+PYG+ AL++TPTRELAYQ+A+QF +G +LR VV GGM+++ QA+ L N+P
Sbjct: 61 QKLWEEPYGIFALILTPTRELAYQIADQFAVIGKPKNLRHCVVTGGMEMIVQARELSNKP 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+V++TPGR+ LE R +FLVLDEADR+L F++++ +F+ LPK RQT
Sbjct: 121 HIVVSTPGRLADHLESCDTFS--LKRIQFLVLDEADRLLGGKFDKQIATIFKALPKERQT 178
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT L+ + ++ + YE+ KTV+ L+Q Y+ P NVKD YL+ ++ +
Sbjct: 179 LLFSATMTDTLEKVKMITKKNTFVYESTAEVKTVDELEQFYVLCPYNVKDGYLVEIVRQF 238
Query: 300 EDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ + I IF TC++C LL + L E+ + V+LH+ SQ QRL+ L +FKS + IL
Sbjct: 239 REKDEKGLIMIFTDTCKNCQLLHMTLNEVGFDTVSLHAMISQRQRLAGLAKFKSHVSKIL 298
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP V LV+N+ IP DYVHRVGRTARAGR G AVS VTQ+D+ L+
Sbjct: 299 IATDVASRGLDIPAVSLVINHIIPNNATDYVHRVGRTARAGRQGRAVSIVTQHDIKLVKA 358
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IEA + +L+E++ V +T+V+ +R A +KL + F+E+ K++KL
Sbjct: 359 IEAKINIRLKEYDVSGLHVAKILTQVHVTKREAQIKLDETDFDERRLINKRKKL 412
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/403 (47%), Positives = 277/403 (68%), Gaps = 5/403 (1%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
S D TF LG+ + + CK+LG + P+ +Q IP L+GKDV+GLA+TGSGKT
Sbjct: 7 SAIEDDKTTFKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTG 66
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AFALPIL L ++P + AL++TPTRELA+Q++EQ +ALGSG+ ++C V+VGG+D+++QA
Sbjct: 67 AFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQA 126
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
L +PH++IATPGR+ LE K+LV+DEADR+L++ FE+E+ + +
Sbjct: 127 LMLAKKPHIIIATPGRLIDHLENTKGFS--LRTLKYLVMDEADRILNMDFEKEVDKLLKV 184
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
+PK R+T LFSATMT +Q L S E ++TVE L+Q Y+FIP KD YL
Sbjct: 185 IPKERRTFLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKFKDCYL 244
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
++VL+++ S ++F TC + ++L+L L +AV LH SQS+RL AL++FKS
Sbjct: 245 VYVLNELAG---NSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKS 301
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
+IL+ATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +V+FVTQ D
Sbjct: 302 KSRSILVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYD 361
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
V+L IE ++ K+L ++ E+EV+ + RV +A+R A M+L
Sbjct: 362 VELYQRIEHLIAKKLPQYPTVEEEVMLLMERVTEAQRYARMEL 404
>gi|427789491|gb|JAA60197.1| Putative atp-dependent rna helicase ddx47 [Rhipicephalus
pulchellus]
Length = 465
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/404 (48%), Positives = 276/404 (68%), Gaps = 5/404 (1%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
N ++ VTF LG+ + + C++L + PT +Q +P L+G+DV+GLA+TGSGKT
Sbjct: 17 NEEKSEENVTFKSLGVVDVLCEACEQLKWKAPTKIQREALPVALQGRDVIGLAETGSGKT 76
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
A+FALPIL L E P + ALV+TPTRELA+Q++EQF+ALG+ + ++ V+VGG+D++TQ
Sbjct: 77 ASFALPILQALLETPQRLFALVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQ 136
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
A +L +PHV+IATPGR+ LE K+LV+DEADR+L++ FEEE+ + +
Sbjct: 137 ALTLAKKPHVIIATPGRLVDHLENTKGFN--LKSLKYLVMDEADRILNMDFEEEVDKILR 194
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
+P+ R+T L+SATMT +Q L S E ++TVE L Q Y+FIP KDVY
Sbjct: 195 VIPRERRTYLYSATMTKKVQKLQRASLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVY 254
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+H+L+ ++ S ++F STC + +LLL L A+ LH Q++RL AL +FK
Sbjct: 255 LVHLLN---ELAGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALTKFK 311
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
S +IL+ATDVASRGLDIP VD V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ
Sbjct: 312 SKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 371
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
DV+L IE ++GK+L +E E+EV+S + RV +A+R A M+L
Sbjct: 372 DVELYQRIEQLIGKKLPLYETVEEEVMSLVERVTEAQRFAKMEL 415
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/428 (47%), Positives = 283/428 (66%), Gaps = 11/428 (2%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + ++C LG PT +Q IP LEGKD++GLA+TGSGKT AFALP+L L ++
Sbjct: 1 GVTDVLCESCLRLGWTHPTKIQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQTLLDN 60
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALVITPTRELA+Q++EQF+ALGS + ++C V+VGG+DL+TQ+ +L +PH+VIAT
Sbjct: 61 PQRLYALVITPTRELAFQISEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPHIVIAT 120
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+L++DEADR+L++ FEEE+ + + +PK R T LFSAT
Sbjct: 121 PGRLVDHLENTKGFS--LRSLKYLIMDEADRILNMDFEEEVNKILKVIPKERSTYLFSAT 178
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT + L S E F+TVE L+Q YIFIP KD YL+ +L+ D+
Sbjct: 179 MTKKVAKLQRASLKNPVKVEVSTKFQTVEKLQQSYIFIPNKFKDCYLVSILN---DLAGN 235
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S IIF TC + + LLL L AV LH +Q++RL AL+++KS TIL+ATDVAS
Sbjct: 236 SFIIFCGTCNNVQRVCLLLRHLGFHAVPLHGQMTQAKRLGALNKYKSKSRTILIATDVAS 295
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L IE ++GK
Sbjct: 296 RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIGK 355
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRS 485
+L E+EV+ + RV +A+R A M+L ++ E K++ + + E+ S +K S
Sbjct: 356 KLPLHPMVEEEVMLLVERVTEAQRYAKMEL------KQVHETKRKTIDIDDEENSTEKIS 409
Query: 486 EKRKKSGE 493
+K K E
Sbjct: 410 KKMKMDHE 417
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/419 (47%), Positives = 281/419 (67%), Gaps = 6/419 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
D TT TF LGL + +TC++L + PT +Q IP LEGKDV+GLA+TGSG
Sbjct: 13 DQKETTAQEPATFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSG 72
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KT AFALPIL L E P + AL++TPTRELA+Q++EQF+ALGS + ++C VVVGG+D++
Sbjct: 73 KTGAFALPILQDLLEHPQRLFALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMM 132
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
+QA L +PHVV+ATPGR+ LE K+LV+DEADR+L++ FE EL +
Sbjct: 133 SQALQLAKKPHVVVATPGRLVDHLENTKGFN--LRSVKYLVMDEADRILNMDFEIELDKI 190
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ +P+ R+T L+SATMT + L S E ++TVE L Q Y+FIP KD
Sbjct: 191 LKVIPRERRTYLYSATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKYKD 250
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
VYL+++L+++ S ++F STC + ++L+L L AV LH SQ++RL L++
Sbjct: 251 VYLVYILNELAG---NSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNK 307
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK +IL+ATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAG+ G A++FVT
Sbjct: 308 FKGKDRSILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVT 367
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
Q DV+L IE ++ KQL + +E++V+ + RV +A+R A M++ D+ ++K K R+
Sbjct: 368 QYDVELYQRIEQLISKQLPLYPSEEEDVMMLVERVTEAQRYARMEMTDND-DKKRKGRR 425
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/419 (46%), Positives = 284/419 (67%), Gaps = 6/419 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+P T + T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSG
Sbjct: 13 EPQPTVEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPMALQGRDIIGLAETGSG 72
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KT AFALPIL+ L + P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D +
Sbjct: 73 KTGAFALPILNALLDTPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSM 132
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
+Q+ +L +PHVVIATPGR+ LE K+LV+DEADR+L++ FE E+ +
Sbjct: 133 SQSLALAKKPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKI 190
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ +P++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD
Sbjct: 191 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKD 250
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL+++L+++ S +IF STC + +LLL L A+ LH SQS+RL +L++
Sbjct: 251 TYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNK 307
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVT
Sbjct: 308 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 367
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
Q DV+L IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 368 QYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRSRE 425
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/420 (47%), Positives = 284/420 (67%), Gaps = 7/420 (1%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P++ D T++ LGL + + C++L +P+ +Q IP L+GKDV+GLA+TGSGK
Sbjct: 10 PDAPEEDKPATWSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGK 69
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
TAAFALPIL L E+P AL++TPTRELA+Q++EQ +ALG+ + ++C V+VGGMD+++
Sbjct: 70 TAAFALPILQSLLENPQRYFALILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMS 129
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
QA L +PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ +
Sbjct: 130 QALILAKKPHILIATPGRLLDHLENTKGFN--LKALKYLVMDEADRILNMDFEVEVDKIL 187
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
+ +P+ R T LFSATMT ++ L E ++TVE L+Q YIFIP KDV
Sbjct: 188 KVIPRERHTFLFSATMTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDV 247
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL+H+L++M S +IF STC + +LLL L AV LH SQ++RL+AL +F
Sbjct: 248 YLVHILNEMAG---NSFMIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKF 304
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+ +IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ
Sbjct: 305 KAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 364
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
DV+L IE ++GKQL ++ +E EV+ RV +++R+A M++ D G +K +RKK
Sbjct: 365 YDVELYQRIEQLIGKQLPLYKTEEDEVMVLQERVAESQRLAKMEMKDLG--DKKGKRKKN 422
>gi|449456355|ref|XP_004145915.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Cucumis
sativus]
Length = 449
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/396 (48%), Positives = 272/396 (68%), Gaps = 7/396 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ E V+ C LG + P+ +Q IP LEGKD++GLAQTGSGKT AFALPIL
Sbjct: 10 TFQSLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 69
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P A V++PTRELA Q+AEQF+ALGSG+ ++C V+VGG+D++ QA +L RPH
Sbjct: 70 ALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPH 129
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
VV+ TPGR L++ + RT K+LVLDEADR+L+ FE+ + + +P+ R+T
Sbjct: 130 VVVGTPGR---LVDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEIPRERRT 186
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT ++ L EA + TV+TLKQQY FIP K+ YL+++L++M
Sbjct: 187 YLFSATMTKKVRKLQRACLRNPVKIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEM 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++++F TC + LLSL+L L A+ + +Q++RL AL++FK+G+ IL+
Sbjct: 247 SG---STSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNILI 303
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q +++ +I
Sbjct: 304 CTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQI 363
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
E ++GK+L +F +E+EVL + RV +A+R++ MK+
Sbjct: 364 EKLIGKKLPQFSAQEEEVLMLLERVAEAKRISLMKI 399
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/439 (46%), Positives = 288/439 (65%), Gaps = 9/439 (2%)
Query: 19 SKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKEL 78
S PE E E E K T+ E PDP ++ VT++ LGL + + C++L
Sbjct: 2 SSDNENPENSAESEGEDAEVKNTE-ETEQTPDP---IEEAPVTWSDLGLVDVLCKACEQL 57
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138
+ P+ +Q IP L+GKD++GLA+TGSGKTAAFALPIL L E+P AL++TPTR
Sbjct: 58 KWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQALLENPQRHFALILTPTR 117
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA+Q++EQF+ALGSG+ ++ V+VGG+D+ +QA L +PH++IATPGR+ L
Sbjct: 118 ELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHIIIATPGRLVDHLSNTKG 177
Query: 199 IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSA 258
KFLV+DEADR+L++ FE E+ + + +P+ R+T LFSATMT + L
Sbjct: 178 FN--LRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRTFLFSATMTKKVNKLQRACL 235
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
E ++TVE L Q Y+FIP KDVYL+H+L+ E+ G S ++F STC +
Sbjct: 236 QDPVRVEVSTKYQTVEKLLQYYVFIPAKFKDVYLVHILN--ENAG-NSFMVFCSTCNNTI 292
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
+LLL L AV LH SQ++RL+AL +FK+ +IL++TDVASRGLDIP VD+V+N
Sbjct: 293 RTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRGLDIPHVDIVIN 352
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE ++GKQL ++ +E+EV+
Sbjct: 353 FDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLIGKQLPLYKTEEEEVM 412
Query: 439 SDITRVYKARRVATMKLMD 457
RV +++R+A +L D
Sbjct: 413 GLQERVEESQRIAKTELRD 431
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/413 (47%), Positives = 276/413 (66%), Gaps = 6/413 (1%)
Query: 56 TDSTV-TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
D TV +F LG+ E + C +LG + PT +Q IP L+GKDV+GLA+TGSGKT AF
Sbjct: 32 NDETVKSFKDLGVTEVLCEACDQLGWKSPTKIQIEAIPVALQGKDVIGLAETGSGKTGAF 91
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPIL L P + LV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D+++Q+
Sbjct: 92 ALPILQSLLASPQRLHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLV 151
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +PHVVIATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P
Sbjct: 152 LAKKPHVVIATPGRLIDHLENTKGFS--LRALKFLVMDEADRILNMDFETEVDKILKVIP 209
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ R+T LFSATMT +Q L + + TV+ L+Q YIFIP KD YL+
Sbjct: 210 RERRTFLFSATMTKKVQKLERAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYLVS 269
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L+++ S IIF STC + ++LLL L A+ LH SQ++RL AL++FKS
Sbjct: 270 ILNELAG---NSFIIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKS 326
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
++LLATDVASRGLDIP VD V+NYDIP + +DY+HRVGRTARAGR G +++FVTQ DV+
Sbjct: 327 RSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVE 386
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
L IE ++GK+L F +E+EV+ + RV +A+R A +++ + G + K +R
Sbjct: 387 LFQRIETLIGKKLPAFPTQEEEVMMLVERVSEAQRFAKIEMKEQGDKRKRPKR 439
>gi|390478768|ref|XP_003735574.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX49 [Callithrix jacchus]
Length = 480
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/417 (48%), Positives = 275/417 (65%), Gaps = 14/417 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAQLGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGG+D++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGLDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVG---FEEELRVVFQCLPKN 236
VIATPGR+ L +FS + +FLV+DEADR+L+ G F +L + +P
Sbjct: 124 VIATPGRLADHLRSS----TLFSIKKIRFLVMDEADRLLEQGCTDFTVDLETILAAVPAR 179
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 180 RQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLI 239
Query: 297 SKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ +D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS
Sbjct: 240 QRFQDEHEDWSVIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIY 299
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVASR L P PR RVGRTARAGR G A++ VTQ D+ L
Sbjct: 300 RILIATDVASRX----AAPLSPAQGTPSLPRSTSRRVGRTARAGRQGQAITLVTQYDIHL 355
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+H IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 356 VHAIEEQIQKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 412
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/456 (43%), Positives = 297/456 (65%), Gaps = 8/456 (1%)
Query: 36 KNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKIL 95
+N +T + E P+ + + +F LG+ + + C +LG + PT +Q IP L
Sbjct: 5 ENGQTAEPEAAVEPE---AAGEESRSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVAL 61
Query: 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL 155
+G+D++GLA+TGSGKT AFALPIL L E P + ALV+TPTRELA+Q++EQF+ALGS +
Sbjct: 62 QGRDIIGLAETGSGKTGAFALPILQALLETPQRLFALVLTPTRELAFQISEQFEALGSSI 121
Query: 156 HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215
+ V+VGG+D ++Q+ +L +PHV+IATPGR+ LE K+LV+DEAD
Sbjct: 122 GVHTTVIVGGIDAMSQSLALAKKPHVIIATPGRLVDHLENTKGFN--LRALKYLVMDEAD 179
Query: 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVET 275
R+L++ FE E+ + + +P++R+T LFSATMT +Q L + ++TVE
Sbjct: 180 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEK 239
Query: 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALH 335
L+Q YIFIP KD YL+H+L+++ S +IF STC + +LLL L A+ LH
Sbjct: 240 LQQYYIFIPSKFKDSYLVHILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLH 296
Query: 336 SFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRT 395
SQ++RL AL++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRT
Sbjct: 297 GQMSQNKRLGALNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRT 356
Query: 396 ARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
ARAGR G +++FVTQ DV+L IE ++GK+L F +E+EV+ RV +A+R+A M+L
Sbjct: 357 ARAGRSGKSITFVTQYDVELFQRIEHLIGKKLPAFPMQEEEVMMLTERVAEAQRLARMEL 416
Query: 456 MDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKS 491
+ G +++++ + + + + +KR+K+
Sbjct: 417 REQGEKKRSRNDDDDTEEAIGVRNKVAGGKKKRRKA 452
>gi|346472553|gb|AEO36121.1| hypothetical protein [Amblyomma maculatum]
Length = 473
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/400 (48%), Positives = 275/400 (68%), Gaps = 5/400 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
++ VTF LG+ + + C++L + PT +Q IP L+G+DV+GLA+TGSGKTA+FA
Sbjct: 28 SEENVTFKSLGVVDVLCEACEQLKWKSPTKIQKEAIPVALQGRDVIGLAETGSGKTASFA 87
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL L E+P + ALV+TPTRELA+Q++EQF+ALG+ + ++ V+VGG+D++TQA L
Sbjct: 88 LPILQALLENPQRLFALVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALLL 147
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+PHV+IATPGR+ LE K+LV+DEADR+L++ FEEE+ + + +P+
Sbjct: 148 AKKPHVIIATPGRLVDHLENTKGFS--LKSLKYLVMDEADRILNMDFEEEVDKILRVIPR 205
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R+T L+SATMT +Q L S E ++TVE L Q Y+FIP KDVYL+H+
Sbjct: 206 ERRTYLYSATMTKKVQKLQRASLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVHL 265
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+++ S ++F STC + +LLL L A+ LH Q++RL +L +FKS
Sbjct: 266 LNELAG---NSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGSLTKFKSKNR 322
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+IL+ATDVASRGLDIP VD V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 323 SILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 382
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE ++GK+L +E E+EV++ + RV +A+R A M+L
Sbjct: 383 YQRIEHLIGKKLPLYETVEEEVMALVERVTEAQRFAKMEL 422
>gi|328874156|gb|EGG22522.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 576
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/397 (48%), Positives = 268/397 (67%), Gaps = 7/397 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L W V +CK LG ++P+ +Q + IPK+LEG+D+L A+TGSGKTAAFA+PIL
Sbjct: 94 SFGDLKLQPWLVNSCKILGFKQPSNIQYNTIPKVLEGRDILASAKTGSGKTAAFAIPILS 153
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+EDPYGV A+V+TPTRELA Q+ EQFKA+GS +++ C VV+GG+D + Q+ L RPH
Sbjct: 154 LLSEDPYGVFAVVLTPTRELAVQIGEQFKAIGSAMNVNCAVVIGGIDSVAQSLVLDKRPH 213
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+++ATPGR+ L I F KFLVLDEADR+L FE E+ + + LP +NRQ
Sbjct: 214 IIVATPGRLASHLSNGLKIALKF--CKFLVLDEADRILCEDFELEIEKIVEHLPPIENRQ 271
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLL+SATMT++L+ L + + +E + TV+TLKQ YI++P KD +L+++L
Sbjct: 272 TLLYSATMTNNLKKLQLVPMKDPFVFEDNSKYDTVDTLKQHYIYMPALAKDCHLVYLLKS 331
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
S IIFV+ CR+ + +L +LD + V+LHSF Q RL AL +FKSG +L
Sbjct: 332 FPQ---SSCIIFVNNCRTVEAVKGMLNKLDIKTVSLHSFLDQKGRLRALKQFKSGFVKVL 388
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP V +V+NY + +DY+HRVGRTAR GR G A+SFVT +DVDL+
Sbjct: 389 IATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRTGKAISFVTPHDVDLVKN 448
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+E +GKQLE + ++ EV + AR++ + L
Sbjct: 449 VETAIGKQLELYPTEDDEVYRHLNEASTARKMVEIYL 485
>gi|196002119|ref|XP_002110927.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
gi|190586878|gb|EDV26931.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
Length = 435
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/429 (45%), Positives = 288/429 (67%), Gaps = 15/429 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LGL W V+ C+ +G+ + T VQ CIP IL+G++ +G A+TGSGKTAAFALPIL
Sbjct: 6 SFADLGLNTWLVKQCRAIGLAKATAVQEKCIPPILQGQNCIGCAKTGSGKTAAFALPILQ 65
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
LA++P+G+ AL++TPTRELA+QLA+QF+A G + +R +V+GG+D+++Q+ +L +PH
Sbjct: 66 NLAKEPFGIYALILTPTRELAFQLADQFRAFGKPIGMRDAIVIGGLDIISQSIALSKKPH 125
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+VIATPGR+ L++ D + FS+ KFLVLDEADR+L+ F +L +F+ LP++RQTL
Sbjct: 126 IVIATPGRLADLIDNDSKVH--FSKIKFLVLDEADRLLEASFGPDLGKIFEILPEDRQTL 183
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFK---TVETLKQQYIFIPKNVKDVYLMHVLS 297
LFSATMT+ + E++A+K F K TVE L Q Y+ +P VKD Y ++++
Sbjct: 184 LFSATMTNAMARAQEVAASKKPFIYEDTDMKISATVEQLDQHYLLMPAVVKDCYFVYLIK 243
Query: 298 KME---------DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
++ +M I ++ S RSC +L+++L L+ ALHS Q QRL +L
Sbjct: 244 QLSLELEKNPRWNMMIFTSTYNFSNRRSCQILAIMLSRLEFSCAALHSLMPQRQRLGSLA 303
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RFK+G IL+ATDVASRGLDIPTV+ V+NY++P DY+HRVGRTARAG+ G+AV+ +
Sbjct: 304 RFKNGLLKILVATDVASRGLDIPTVEAVVNYNVPLSADDYIHRVGRTARAGKKGMAVTLM 363
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV+ IH IE +L ++E E +VL + V R+ ++L + F + +E
Sbjct: 364 TQYDVNRIHNIETTTNVKLLKYEVDEHDVLKLLNIVTMLRKEIDVRLEESNF-GRNRELN 422
Query: 469 KQKLKMLAE 477
K+K+ L++
Sbjct: 423 KRKMTFLSK 431
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 283/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F +++EV+ RV +A+R A M+L + G E+K ++R+
Sbjct: 376 QRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHG-EKKKRKRE 426
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/454 (44%), Positives = 290/454 (63%), Gaps = 16/454 (3%)
Query: 48 NPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
+ +P T TF LG+ E C +LG + PT +Q IP LEG+D++GLA+TG
Sbjct: 13 SSEPKEAEVQETKTFKDLGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGRDIIGLAETG 72
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
SGKT AFALPIL+ L E P ALV+TPTRELA+Q++EQF+ALGS + + C V+VGG+D
Sbjct: 73 SGKTGAFALPILNALLETPQRFFALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGID 132
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
++Q+ +L +PHV+IATPGR+ LE K+LV+DEADR+L++ FE E+
Sbjct: 133 SMSQSLALAKKPHVIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVD 190
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287
+ + +P++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP
Sbjct: 191 KILKLIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKF 250
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
KD YL+++L+++ S ++F STC + +LLL L A+ LH SQ++RL +L
Sbjct: 251 KDSYLVYILNELAG---NSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSL 307
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++F
Sbjct: 308 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITF 367
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
VTQ DV+L IE ++GK+L F +E+EV+ RV +A+R A M++ + G E++ + R
Sbjct: 368 VTQYDVELYQRIEHLIGKKLPAFPTQEEEVMLLTERVAEAQRFARMEMREQG-EKRKRPR 426
Query: 468 KKQKLKMLAEK----------GSLKKRSEKRKKS 491
+ E G +KKR +R S
Sbjct: 427 DDKDDNDDTENAMGVRNKVTGGKMKKRKGQRPHS 460
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 283/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F +++EV+ RV +A+R A M+L + G E+K ++R+
Sbjct: 376 QRIEHLIGKKLPVFPTQDEEVMMLTERVSEAQRFARMELREHG-EKKKRKRE 426
>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 438
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/405 (48%), Positives = 277/405 (68%), Gaps = 7/405 (1%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
+GL + + CK L + P+ +Q IP L+GKDV+GLA+TGSGKT AFALPIL L E
Sbjct: 1 MGLIDTLCEACKALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLE 60
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
+P A+++TPTRELAYQ++EQF+ALG+ + ++C V+VGGMD+++QA L +PH++IA
Sbjct: 61 NPQRYFAVILTPTRELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHIIIA 120
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGR+ LE K+LV+DEADR+L++ FE EL + + LP+ R+T LFSA
Sbjct: 121 TPGRLVDHLENTKGFN--LKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFSA 178
Query: 245 TMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI 304
TMT ++ L S E ++TVE L Q Y+FIP KDVYL+H+L+++
Sbjct: 179 TMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAG--- 235
Query: 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364
S +IF STC + +L+L L AV LH SQ++RL++L++FK IL++TDVA
Sbjct: 236 NSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTDVA 295
Query: 365 SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424
SRGLDIP VD+VLN+DIP + +DY+HRVGRTARAGR G AV+FVTQ DV+L IE ++G
Sbjct: 296 SRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLLG 355
Query: 425 KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
K+L EF+C+E EV++ RV +A+R A ++L D EE+ ++K
Sbjct: 356 KKLPEFKCEEDEVMALQERVGEAQRTARLELKD--IEERKGMKRK 398
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 281/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 83 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 142
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 143 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 200
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 201 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 260
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 261 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 317
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 318 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 377
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 378 QRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRSRE 428
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 281/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 83 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 142
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 143 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 200
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 201 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 260
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 261 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 317
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 318 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 377
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 378 QRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRSRE 428
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/410 (47%), Positives = 279/410 (68%), Gaps = 6/410 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPI
Sbjct: 23 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 82
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L+ L E P + ALV+TPTRELA+Q++EQF+ALGS + + C V+VGG+D ++Q+ +L +
Sbjct: 83 LNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKK 142
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+
Sbjct: 143 PHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK 200
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L++
Sbjct: 201 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNE 260
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +IL
Sbjct: 261 LAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
LATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 378 IEHLIGKKLPVFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRARE 426
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/412 (47%), Positives = 281/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 83 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 142
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PHVVIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 143 KKPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 200
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 201 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 260
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 261 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 317
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 318 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 377
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 378 QRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRSRE 428
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 281/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 20 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFAL 79
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 80 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 139
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 140 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 197
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 198 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 257
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 258 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 314
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 315 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 374
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 375 QRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRSRE 425
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/408 (47%), Positives = 281/408 (68%), Gaps = 6/408 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L +PH
Sbjct: 85 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPH 144
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+T
Sbjct: 145 IVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 202
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L+++
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELA 262
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +ILLA
Sbjct: 263 G---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE
Sbjct: 320 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
++GK+L F +++EV+ RV +A+R A M+L + G E+K ++R+
Sbjct: 380 HLIGKKLPVFPTQDEEVMMLTERVSEAQRFARMELREHG-EKKKRKRE 426
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 282/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +++
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/422 (45%), Positives = 281/422 (66%), Gaps = 7/422 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
DP T T TF LG+ + C +LG + PT +Q IP L+G+D++GLA+TGSG
Sbjct: 15 DPQETEVPETKTFKDLGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSG 74
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KT AFALPIL+ L + P ALV+TPTRELA+Q++EQF+ALGS + + C V+VGG+D +
Sbjct: 75 KTGAFALPILNALLDTPQRFFALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSM 134
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
+Q+ +L +PHV+IATPGR+ LE K+LV+DEADR+L++ FE E+ +
Sbjct: 135 SQSLALAKKPHVIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKI 192
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ +P++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD
Sbjct: 193 LKLIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKD 252
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL+++L+++ S ++F STC + +LLL L A+ LH SQ++RL +L++
Sbjct: 253 SYLVYILNELAG---NSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNK 309
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVT
Sbjct: 310 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 369
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
Q DV+L IE ++GK+L F +E+EV+ RV +A+R A M++ + G EK K ++
Sbjct: 370 QYDVELYQRIEHLIGKKLPAFPTQEEEVMLLTERVAEAQRFARMEMREQG--EKRKRFRE 427
Query: 470 QK 471
K
Sbjct: 428 DK 429
>gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 452
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/406 (47%), Positives = 275/406 (67%), Gaps = 7/406 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ E + C LG + PT +Q +P L+G D++GLAQTGSGKTA FALPIL
Sbjct: 20 TFRSLGVCEQLAEACDALGWKAPTQIQVDAVPVALKGHDIIGLAQTGSGKTATFALPILQ 79
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E+P + A V++PTRELA Q+AEQF+ALGSG+ L+C V+VGG+D++ Q+ +L RPH
Sbjct: 80 ALLENPQPLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVALAKRPH 139
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
VV+ TPGR L++ + RT K+LVLDEADR+L++ FE+E+ + + +PK R+T
Sbjct: 140 VVVGTPGR---LVDHLTNTKGFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVIPKERRT 196
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT+ + L E + TV++LKQ+Y+FIP KD YL+++L+++
Sbjct: 197 YLFSATMTTKVAKLQRACLKNPVKVEVSAKYSTVDSLKQEYLFIPAKYKDCYLVYILNEL 256
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+A++F TC + LSL+L L A+ + SQ +RL AL +FK+G IL+
Sbjct: 257 AG---NTAMVFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAGDCNILI 313
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDVASRGLDIP+V+LV+NYDIP +DY+HRVGRTARAGR G A+S V Q DV+L +I
Sbjct: 314 CTDVASRGLDIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQYDVELYQKI 373
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
E ++GK+L EF +++EVL + RV +A+R+ATM + + +K K
Sbjct: 374 EELIGKKLPEFSHQQEEVLLMLERVSEAQRLATMHMREKDGAKKGK 419
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/440 (45%), Positives = 289/440 (65%), Gaps = 6/440 (1%)
Query: 29 PEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
P PE K A + + + T + T TF LG+ + + C +LG +PT +Q
Sbjct: 85 PLPETSGKMAASEEHDCPTETSQPVVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQI 144
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
IP L+G+D++GLA+TGSGKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF
Sbjct: 145 EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQF 204
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+ALGS + ++ V+VGG+D ++Q+ +L +PH++IATPGR+ LE K+
Sbjct: 205 EALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFN--LRALKY 262
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE 268
LV+DEADR+L++ FE E+ + + +P++R+T LFSATMT +Q L +
Sbjct: 263 LVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 322
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
++TVE L+Q YIFIP KD YL+++L+++ S +IF STC + +LLL L
Sbjct: 323 KYQTVEKLQQYYIFIPSKFKDTYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLG 379
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
A+ LH SQS+RL +L++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY
Sbjct: 380 FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDY 439
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+HRVGRTARAGR G A++FVTQ DV+L IE ++GK+L F ++ EV+ RV +A+
Sbjct: 440 IHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVAEAQ 499
Query: 449 RVATMKLMDDGFEEKAKERK 468
R A M+L + G E+K + R+
Sbjct: 500 RFARMELREHG-EKKKRPRE 518
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 20 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 79
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 80 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 139
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PHV+IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 140 KKPHVIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 197
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 198 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 257
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S IIF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 258 NELAG---NSFIIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 314
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 315 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 374
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 375 QRIEHLIGKKLPVFPTQDDEVMMLTERVNEAQRFARMELREHG-EKKKRSRE 425
>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
Length = 455
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/417 (49%), Positives = 276/417 (66%), Gaps = 15/417 (3%)
Query: 49 PDPNSTTTDSTV------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLG 102
P P +T S TF LGL + ++ +++G + PT +Q+ +P LEG+D++G
Sbjct: 2 PSPEDASTSSATPEAQKHTFKSLGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIG 61
Query: 103 LAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
+A+TGSGKTAAFALPIL +L E+P G+ A V+ PTRELAYQ+++QF+ALG+ + RC V+
Sbjct: 62 VAETGSGKTAAFALPILQKLWEEPKGLFACVLAPTRELAYQISQQFEALGAAMGARCAVI 121
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDV 220
VGGMDL TQA +L RPHVV+ATPGR+ LEE FS RT KFLVLDEADR+LD+
Sbjct: 122 VGGMDLPTQAIALAKRPHVVVATPGRLLQHLEETKG----FSLRTLKFLVLDEADRLLDM 177
Query: 221 GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQY 280
F + + + +PK R T LFSATMTS + L S E ++TV TL Q Y
Sbjct: 178 DFGPAIDKILKLIPKERTTYLFSATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHY 237
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
+ +P K V L+++ + + S IIF T R LLS++L L AV LH SQ
Sbjct: 238 LLVPLKDKVVMLIYLANSLAQ---NSIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQ 294
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
SQRL AL +FKSG IL+ATDVASRGLDIP+VD+V+NYDIP + +DY+HRVGRTARAGR
Sbjct: 295 SQRLGALGKFKSGGRKILVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGR 354
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
G A++ VTQ DV+L+ IE V+GK+++ + ++EVL RV +A R+A ++ D
Sbjct: 355 AGKAITLVTQYDVELLQRIEKVIGKKMDAWPTDDEEVLLLKERVSEAERLAVNEIKD 411
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/442 (45%), Positives = 293/442 (66%), Gaps = 14/442 (3%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D +TF LG+ + + C L ++PT VQ +P + +D++GLA+TGSGKTAAFA+
Sbjct: 21 DDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAI 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL L E P + ALV+TPTRELA+Q+ EQF+ALG+ + + V+VGG+D +TQ+ +L
Sbjct: 81 PILQALLETPQKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
RPHV++ATPGR+ LE K+LV+DEADR+L++ FE EL + + +PK
Sbjct: 141 KRPHVIVATPGRLVDHLENTKGFN--LRALKYLVMDEADRILNMDFEVELEKILKVIPKE 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T L+SATMT + L S N E ++TV+ LKQ YIFIP K+ YL+++L
Sbjct: 199 RRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLIYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ +M ++AI+F STC S +L+L +L AV LH SQ++RL +L++FKS +T
Sbjct: 259 N---EMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKAST 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ TDVASRGLDIP VD+VLNYD+P +DYVHRVGRTARAGR G+A++FVTQ DV++
Sbjct: 316 VLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIY 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKML- 475
+IE ++GK+L FE E +V+ + RV +A+++A ++ + EEK K RK+++
Sbjct: 376 QKIERLIGKKLPLFETVENDVMLLVERVEEAQKLAKQEMKE--MEEK-KGRKRRQFDDDD 432
Query: 476 -----AEKGSLKKRSEKRKKSG 492
AE+ S ++ KRK+ G
Sbjct: 433 DEVNDAEESSAFRKKLKRKQKG 454
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PHV+IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHVIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEYLIGKKLPVFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPVFPTQDDEVMMLAERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/432 (45%), Positives = 273/432 (63%), Gaps = 16/432 (3%)
Query: 25 PEPQPE-PEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRP 83
P+P P P +A E F+ + +FA LG+ + + +G P
Sbjct: 2 PKPAPSAPSQAPADANNETAEGFSG----------SASFAELGVDSAICEAIEAVGWSAP 51
Query: 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143
+ +Q IP L GKD++GLA+TGSGKT AF +PIL L +P + ALV+ PTRELAYQ
Sbjct: 52 SKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLHNPQRLYALVLAPTRELAYQ 111
Query: 144 LAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVF 203
+ EQF+ALG+ + L+C VVGG+D++ Q +L +PHVVIATPGR+ LE
Sbjct: 112 IGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFS--L 169
Query: 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYF 263
KFLVLDEADR+L + FEEE+ + Q +P +R T LFSATMTS ++ L S
Sbjct: 170 RTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATMTSKVRKLQRASLKDPVK 229
Query: 264 YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLL 323
E F T ETLKQ Y+FIP KD YL +VL+++ +S +IF STC ++L+
Sbjct: 230 VEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAG---QSVLIFASTCNGTQKVTLM 286
Query: 324 LEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR 383
L L +A+ LH Q RL AL++FK+ +L+ TDVASRGLDIP+VD+V+NYDIP
Sbjct: 287 LRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPT 346
Query: 384 YPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR 443
+ +DY+HRVGRTARAGR G+A+SFVTQ DV+L IE ++G +L+ + C+E+ VL R
Sbjct: 347 HGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYSCEEETVLVITER 406
Query: 444 VYKARRVATMKL 455
V +A+R+AT+++
Sbjct: 407 VNEAQRIATIEM 418
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/420 (46%), Positives = 283/420 (67%), Gaps = 7/420 (1%)
Query: 49 PDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
P P + + T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGS
Sbjct: 14 PQP-AVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGS 72
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D
Sbjct: 73 GKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 132
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
++Q+ +L +PH++IATPGR+ LE K+LV+DEADR+L++ FE E+
Sbjct: 133 MSQSLALAKKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDK 190
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP K
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFK 250
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++L+++ S +IF STC + +LLL L A+ LH SQS+RL +L+
Sbjct: 251 DTYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FV
Sbjct: 308 KFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV+L IE ++GK+L F +E EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 368 TQYDVELFQRIEHLIGKKLPVFPTQEDEVMMLTERVTEAQRFARMELREHG-EKKKRTRE 426
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 16 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 75
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 76 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 135
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 136 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 193
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 194 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 253
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 254 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 310
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 311 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 370
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 371 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 421
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPVFPTQDDEVMMLAERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/399 (47%), Positives = 277/399 (69%), Gaps = 5/399 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + +TC++LG ++PT +Q IP L+G+D++GLA+TGSGKT AFALPIL
Sbjct: 20 TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D+++Q+ +L +PH
Sbjct: 80 TLLESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPH 139
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VVIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+T
Sbjct: 140 VVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 197
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L+++
Sbjct: 198 LFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELA 257
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + ++LLL L A+ LH SQ++RL +L++FK+ +ILLA
Sbjct: 258 G---NSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLA 314
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FV+Q DV+L IE
Sbjct: 315 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIE 374
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDG 459
++GK+L F +E+EV+ RV +A+R A ++L + G
Sbjct: 375 HLIGKKLPAFPTQEEEVMMLNERVSEAQRFARIELREHG 413
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/410 (47%), Positives = 279/410 (68%), Gaps = 6/410 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPI
Sbjct: 23 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 82
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L +
Sbjct: 83 LNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKK 142
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+
Sbjct: 143 PHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK 200
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L++
Sbjct: 201 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNE 260
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +IL
Sbjct: 261 LAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
LATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 378 IEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRSRE 426
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/403 (46%), Positives = 272/403 (67%), Gaps = 5/403 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C +LG + PT +Q IP L+GKDV+GLA+TGSGKT AFALPIL
Sbjct: 40 TFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQ 99
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L P + LV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D+++Q+ L +PH
Sbjct: 100 SLLASPQRLHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPH 159
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+VIATPGR+ +E KFLV+DEADR+L++ FE E+ + + +P+ R+T
Sbjct: 160 IVIATPGRLIDHMENTKGFS--LRALKFLVMDEADRILNMDFETEVDKILKVIPRERRTF 217
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT +Q L + + TV+ L+Q Y+FIP KD YL+ +L+++
Sbjct: 218 LFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYVFIPAKYKDCYLVSILNELA 277
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + ++L+L L A+ LH SQ++RL AL++FKS ++LLA
Sbjct: 278 G---NSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLA 334
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD V+NYDIP + +DY+HRVGRTARAGR G +++FVTQ DV+L IE
Sbjct: 335 TDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIE 394
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
+++GK+L F +E+EV+ + RV +A+R A +++ + G + K
Sbjct: 395 SLIGKKLPAFPTQEEEVMMLVERVSEAQRFARVEMKEQGEKRK 437
>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/402 (47%), Positives = 274/402 (68%), Gaps = 5/402 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD + ++ LGL + C+ L + P+ +Q IP L+GKD++GLA+TGSGKT AFA
Sbjct: 52 TDVSKSWEDLGLIDTLCTACRGLKWKAPSKIQREAIPLALQGKDIIGLAETGSGKTGAFA 111
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL L ++P A+V+TPTRELAYQ++EQF+ALG+ + ++C V+VGGMDL+TQA L
Sbjct: 112 LPILQALLDNPQRYFAVVLTPTRELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAIQL 171
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+PH++IATPGR+ LE ++LV+DEADR+L++ FEEE+ + + +P+
Sbjct: 172 ARKPHIIIATPGRLVDHLENTKGFS--LKAIRYLVMDEADRILNMDFEEEVNKILKVMPR 229
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R+T LFSATMT ++ L S E ++TVE L Q Y+FIP K+VYL+HV
Sbjct: 230 ERRTFLFSATMTKKVKKLERASLRDPVKVEVSSKYQTVEKLLQYYLFIPARYKNVYLVHV 289
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+++ S +IF STC + +L+L L AV LH +Q++RL+AL++FKS
Sbjct: 290 LNELAG---NSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQAR 346
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL++TDVASRGLDIP VD+VLN DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 347 QILISTDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVEL 406
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE ++GK+L E++C++ EV++ RV +A R A ++ D
Sbjct: 407 YQRIEHLLGKKLPEYKCEQDEVMALQERVAEAHRTARIEQRD 448
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q +P L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/408 (47%), Positives = 277/408 (67%), Gaps = 7/408 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ + + C +LG + PT +Q IP L+G+DV+GLA+TGSGKT AFALPIL
Sbjct: 25 SFKDLGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQ 84
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L +PH
Sbjct: 85 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQTTVIVGGIDTMSQSLALAKKPH 144
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
V+IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P++R+T
Sbjct: 145 VIIATPGRLVDHLENTKGFN--LRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTF 202
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L+++
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELA 262
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + +LLL L A+ LH SQ++RL +L++FK+ +ILLA
Sbjct: 263 G---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLA 319
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L IE
Sbjct: 320 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIE 379
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
++GK+L F +E+EV+ RV +A+R+A M+L + G EK + R
Sbjct: 380 HLIGKKLPAFPMQEEEVMMLTERVAEAQRLARMELREQG--EKKRSRN 425
>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
Length = 435
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/408 (46%), Positives = 274/408 (67%), Gaps = 5/408 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
+ LGL + TC +L PT +Q IP +LEGKDV+GLA+TGSGKTAAFALPIL
Sbjct: 4 WKALGLVDTLCTTCIQLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQA 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L E+P AL++TPTRELA+Q++EQF+ALGS + ++C V+VGGMD+ Q L +PH+
Sbjct: 64 LLENPQRYFALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHI 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
+IATPGR+ LE + KFL++DEADR+L++ FE E+ + + +P+ R+TLL
Sbjct: 124 IIATPGRLVDHLENTKGFN--LRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRTLL 181
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+++
Sbjct: 182 FSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAG 241
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+ +IF TC + +LLL L AV LH SQ++R++AL +F++ +IL++T
Sbjct: 242 ---NNFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILIST 298
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++F+TQ DV+L IE
Sbjct: 299 DVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRIEQ 358
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
++ KQL + +E+EV+ RV +A+R+ M + + +K +RK+
Sbjct: 359 LISKQLPLYPTEEEEVMLLQERVSEAQRIVKMDMKNIEENKKLGKRKR 406
>gi|391344138|ref|XP_003746360.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Metaseiulus occidentalis]
Length = 461
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/436 (46%), Positives = 288/436 (66%), Gaps = 18/436 (4%)
Query: 21 TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGM 80
T S+ E + E EP KTTQ +PD T TF LG+ + + C+ L
Sbjct: 3 TSSEDEDRLENEP-----KTTQ---GNDPDDGEDKT----TFKELGVVDVLCEACEALKW 50
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
R P+ +Q IP L+G+D++GLA+TGSGKTAAFALPIL L E+P + AL++TPTREL
Sbjct: 51 RTPSKIQKEAIPVALQGRDIIGLAETGSGKTAAFALPILQALLENPARLFALILTPTREL 110
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP 200
A+Q++EQF+ALGS + ++ V+VGG+D++TQA L +PHVVIATPGR+ LE
Sbjct: 111 AFQISEQFEALGSTIGIKSAVIVGGIDMMTQAMMLAKKPHVVIATPGRLIDHLENTKGF- 169
Query: 201 PVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQTLLFSATMTSDLQTLLELSAN 259
++LV+DEADR+L++ FEEE+ + + +P+ NR+T L+SATMT + L S
Sbjct: 170 -TLKNLRYLVMDEADRILNMDFEEEVDKILKVIPRENRRTYLYSATMTKKVAKLQRASLT 228
Query: 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319
E ++TV+ L+Q Y+FIP K+V+L+H+L +D+ +S I+F +TC
Sbjct: 229 DPVRVEVSTKYQTVDKLQQYYLFIPAKYKEVHLVHLL---QDLAGQSFIVFCATCNGTQK 285
Query: 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
L+L+L L A+ LH SQ++RL AL +FK+ ILLATDVA+RGLDIP VD+V+NY
Sbjct: 286 LALMLRNLGFTAIPLHGQMSQAKRLGALQKFKAQARNILLATDVAARGLDIPHVDVVINY 345
Query: 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLS 439
DIP + +DY+HRVGRTARAGR G AV+FV+Q DV+L IE ++GKQL +++ E+EVL
Sbjct: 346 DIPTHSKDYIHRVGRTARAGRSGKAVTFVSQYDVELYQRIEHLIGKQLPKYDVLEREVLV 405
Query: 440 DITRVYKARRVATMKL 455
RV +A+R A ++
Sbjct: 406 LEERVQEAQRFARQEM 421
>gi|391330997|ref|XP_003739937.1| PREDICTED: ATP-dependent RNA helicase DRS1-like [Metaseiulus
occidentalis]
Length = 972
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/432 (43%), Positives = 295/432 (68%), Gaps = 3/432 (0%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L++W ++ K + ++ P+PVQ +C+P+IL+G+D L A+TGSGKT AFALP+L
Sbjct: 19 TFKELKLSDWLLERLKIISIQSPSPVQRNCVPEILKGRDCLACAKTGSGKTLAFALPVLE 78
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L +PYG+ AL+++PTRELA Q+AEQF+ LG ++L+ +VVGG D++ Q + L RPH
Sbjct: 79 KLFREPYGIFALILSPTRELAIQIAEQFRILGKKVNLKDCLVVGGTDIVDQGRELAQRPH 138
Query: 181 VVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
+V+ATPGR+ L+ D+ P+FS+ + L+LDEAD++L + ++L+++F LPK RQT
Sbjct: 139 IVVATPGRLADHLDFAAEDMKPLFSKIQMLILDEADQLLSGKYNDQLKMIFSALPKKRQT 198
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSAT+T +Q L L+ +FY A TV++L Q+ + P + +D YL+ V+ +
Sbjct: 199 LLFSATLTRTIQELQMLAMTDPFFYMAPSSIATVDSLVQRVVLTPDHARDTYLIQVVKQF 258
Query: 300 EDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
++ + IIFV+T + C LSL ++ L V+LH+ ++Q +R++AL FKS IL
Sbjct: 259 QEKNSKGLIIIFVATRKKCQALSLGMDSLGFRNVSLHAQRTQRERVAALATFKSSATKIL 318
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP V+LV+N+++P P+ YVHRVGRTARAG GGL+V+ T D+ L+HE
Sbjct: 319 VATDVAARGLDIPRVELVVNHNVPNDPKLYVHRVGRTARAGAGGLSVTLATPQDIHLLHE 378
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEK 478
IE VG + + + ++E++ + +V A R A +++ + FEE+ K+++L +L +
Sbjct: 379 IEKHVGVTMTKMKIDDREIVKIMAQVNVAVREAEIRMDETDFEERQLIYKRKRL-LLKSQ 437
Query: 479 GSLKKRSEKRKK 490
+ KRS+ KK
Sbjct: 438 DLMGKRSDASKK 449
>gi|402591826|gb|EJW85755.1| Ddx49 protein [Wuchereria bancrofti]
Length = 461
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/415 (46%), Positives = 269/415 (64%), Gaps = 20/415 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTFA LGL++W + L + PTPVQ +CIP IL G DVLG A+TG+GKT AF LPIL
Sbjct: 44 VTFAELGLSKWLCDQLRHLAINTPTPVQVNCIPHILAGSDVLGCAKTGTGKTLAFGLPIL 103
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
H LA DPYG+ AL++TPTRELA Q+ +QF ALG+ + L+ ++VGG D + Q+ L RP
Sbjct: 104 HELALDPYGICALILTPTRELAMQIGDQFAALGTSIGLKIGIIVGGKDRVAQSSDLARRP 163
Query: 180 HVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
H+++ATPGR+ LE D + +F + +FLVLDEADR+LD + EL+ + LPK RQ
Sbjct: 164 HIIVATPGRLADHLESDSENTGKLFEKLRFLVLDEADRLLDGQYSVELKTILTFLPKQRQ 223
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+TS L L ++S K YF+E TV+ L+Q+Y+ P VKD YL++V+
Sbjct: 224 TLLFSATITSALSQLHQVSVKKPYFFEDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKN 283
Query: 299 MEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ S I IF TCR C L+++ L + +LHS SQ +R S+L +F+SG+ I
Sbjct: 284 FHEKHPESLILIFSHTCRECQALAIMFHGLGFKVGSLHSQISQQERTSSLTKFRSGRIKI 343
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVASRGLDIP VDLV+N+++P+ P+ Y+HRVGR+ARAGR G A+ FVTQ D+ L+
Sbjct: 344 LICTDVASRGLDIPHVDLVVNHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYDIYLL- 402
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
QEV +T+V +R A +KL F E+ K++++
Sbjct: 403 -----------------QEVTQYVTQVLVTKREAEIKLDQQNFGERKMINKRKEM 440
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 284/427 (66%), Gaps = 14/427 (3%)
Query: 50 DPNSTTT--------DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVL 101
DP S T + T TF LG+ + + C +LG +PT +Q IP L+G+D++
Sbjct: 6 DPGSPTEAPQPAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDII 65
Query: 102 GLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEV 161
GLA+TGSGKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V
Sbjct: 66 GLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQTAV 125
Query: 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG 221
+VGG+D ++Q+ +L +PHVVIATPGR+ LE K+LV+DEADR+L++
Sbjct: 126 IVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMD 183
Query: 222 FEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYI 281
FE E+ + + +P++R+T LFSATMT +Q L + ++TVE L+Q YI
Sbjct: 184 FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYI 243
Query: 282 FIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341
FIP KD YL+++L+++ S +IF STC + +LLL L A+ LH SQS
Sbjct: 244 FIPSKFKDTYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQS 300
Query: 342 QRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG 401
+RL +L++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR
Sbjct: 301 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 360
Query: 402 GLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFE 461
G +++FVTQ DV+L IE ++GK+L F ++ EV+ RV +A+R A M+L + G E
Sbjct: 361 GKSITFVTQYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-E 419
Query: 462 EKAKERK 468
+K + R+
Sbjct: 420 KKKRTRE 426
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/415 (46%), Positives = 280/415 (67%), Gaps = 6/415 (1%)
Query: 49 PDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
P P + + T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGS
Sbjct: 14 PQP-AVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGS 72
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D
Sbjct: 73 GKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 132
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
++Q+ +L +PHV+IATPGR+ LE K+LV+DEADR+L++ FE E+
Sbjct: 133 MSQSLALAKKPHVIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDK 190
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP K
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYVFIPSKFK 250
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++L+++ S +IF STC + +LLL L A+ LH SQS+RL +L+
Sbjct: 251 DTYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FV
Sbjct: 308 KFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
TQ DV+L IE ++GK+L F ++ EV+ RV +A+R A M+L + G ++K
Sbjct: 368 TQYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKK 422
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/420 (46%), Positives = 283/420 (67%), Gaps = 7/420 (1%)
Query: 49 PDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
P P + + T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGS
Sbjct: 14 PQP-AVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGS 72
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D
Sbjct: 73 GKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 132
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
++Q+ +L +PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+
Sbjct: 133 MSQSLALAKKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDK 190
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP K
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFK 250
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++L+++ S +IF STC + +LLL L A+ LH SQS+RL +L+
Sbjct: 251 DTYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FV
Sbjct: 308 KFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV+L IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 368 TQYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRTRE 426
>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Acyrthosiphon pisum]
Length = 450
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/400 (46%), Positives = 274/400 (68%), Gaps = 5/400 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTF LG+ + +TC+ L + PT +Q IP L+GKD++GLA+TGSGKT AFA+PIL
Sbjct: 19 VTFKDLGVTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPIL 78
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E+P AL++TPTRELA+Q++EQ +ALGS + ++C V+VGGMD++ Q+ L +P
Sbjct: 79 QALLENPQRYFALILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAKKP 138
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE K LV+DEADR+L++ FEEE+ + + +P+ R+T
Sbjct: 139 HIIIATPGRLVDHLENTKGFS--LRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERRT 196
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT +Q L S E F+TVE L+Q YIFIP KDVYL+H+L++M
Sbjct: 197 FLFSATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHILNEM 256
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
S ++F++TC ++LLL L +A+ LH +Q++RL++L++FKS +IL+
Sbjct: 257 AG---NSFMVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILI 313
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDV+SRGLDIP VD+V+N+D+P + +DY+HRVGRTARAGR G A++ VTQ D++L I
Sbjct: 314 STDVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRI 373
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDG 459
E ++ K+L ++ ++ EV+ RV +A+R+A M + D G
Sbjct: 374 EQLISKKLPLYQVEDDEVMCLQERVSEAQRLAKMNMKDMG 413
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/420 (46%), Positives = 283/420 (67%), Gaps = 7/420 (1%)
Query: 49 PDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
P P + + T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGS
Sbjct: 14 PQP-AVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGS 72
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKT AFALPIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D
Sbjct: 73 GKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 132
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
++Q+ +L +PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+
Sbjct: 133 MSQSLALAKKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDK 190
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP K
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFK 250
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++L+++ S +IF STC + +LLL L A+ LH SQS+RL +L+
Sbjct: 251 DTYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FV
Sbjct: 308 KFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV+L IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 368 TQYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRTRE 426
>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 458
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/399 (47%), Positives = 274/399 (68%), Gaps = 5/399 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D VTF LG+ + QTC+ L + PT +Q IP L+G+DV+GLA+TGSGKT AFAL
Sbjct: 19 DKVVTFKDLGIVDVLCQTCESLKWKAPTKIQKEAIPLTLQGRDVIGLAETGSGKTGAFAL 78
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL L ++P AL++TPTRELA+Q++EQF+ALGS + ++ V+VGGMD+++QA L
Sbjct: 79 PILQALLQNPQRYFALILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLA 138
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PHV+IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P+
Sbjct: 139 KKPHVIIATPGRLVDHLENTKGFN--LKALKFLVMDEADRILNMDFEVEVDKILKVIPRE 196
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+TLLFSATMT +Q L S + E ++TV+ L+Q Y+FIP KDVYL+ ++
Sbjct: 197 RRTLLFSATMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSII 256
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
++M + +IF TC + +LLL +L A+ LH SQ++RL AL +F++ +
Sbjct: 257 NEMAG---NTFMIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRS 313
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 314 ILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELY 373
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE ++GK+L F+ +E EV++ RV +A+R + M++
Sbjct: 374 QRIEQLIGKKLPLFKIEEDEVMTLQERVAEAQRNSKMEM 412
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 279/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 14 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 73
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 74 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 133
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + P++
Sbjct: 134 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVNPRD 191
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 192 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 251
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 252 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 308
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 309 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 368
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 369 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 419
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/408 (47%), Positives = 278/408 (68%), Gaps = 6/408 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L +PH
Sbjct: 85 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+T
Sbjct: 145 IVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 202
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L+++
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELA 262
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + +LLL L A+ LH +QS+RL +L++FK+ +ILLA
Sbjct: 263 G---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQSKRLGSLNKFKAKARSILLA 319
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE
Sbjct: 320 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 380 HLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRTRE 426
>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
Length = 490
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/435 (47%), Positives = 284/435 (65%), Gaps = 12/435 (2%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LGL + Q C+ L + P+ +Q IP L GKD++GLA+TGSGKTAAFALPIL L +
Sbjct: 53 LGLVDTLCQACRALKWKVPSKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLD 112
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
+P A+V+TPTRELAYQ++EQF+ALG+ + ++C VVVGGMDL+ QA L +PH++IA
Sbjct: 113 NPQRYFAVVLTPTRELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHIIIA 172
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGR+ LE K+LV+DEADR+L++ FE E+ + + +P+ R+T LFSA
Sbjct: 173 TPGRLVDHLENTKGFG--LKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFSA 230
Query: 245 TMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI 304
TMT ++ L S E ++TV+ L Q YIFIP KDVYL+H+L+++
Sbjct: 231 TMTKKVKKLERASLRDPVKVEVSSKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAG--- 287
Query: 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364
S +IF STC + +L+L L AV LH +Q++RL+AL++FKS IL++TDVA
Sbjct: 288 NSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTDVA 347
Query: 365 SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424
SRGLDIP VD+VLN DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE ++
Sbjct: 348 SRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLLS 407
Query: 425 KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKR 484
K+L E++C+E EV++ RV +A+R A M+ D E KA + K K GS
Sbjct: 408 KKLPEYKCEEDEVMALQERVAEAQRTARME-QKDIEERKASKGAKGKRGAATAAGSDDDD 466
Query: 485 SE------KRKKSGE 493
+E KR K+G+
Sbjct: 467 TEQFNGARKRLKTGK 481
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/412 (46%), Positives = 279/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TG GKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/412 (45%), Positives = 277/412 (67%), Gaps = 5/412 (1%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
++ +F LG+ E + C +LG + PT +Q IP L+G+D++GLA+TGSGKT AF
Sbjct: 11 NAEAAKSFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAF 70
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPIL L E P ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D++ Q+ +
Sbjct: 71 ALPILQALLETPQRFFALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLA 130
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +PHV+IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P
Sbjct: 131 LAKKPHVIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIP 188
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL++
Sbjct: 189 RDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVY 248
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L+++ S +IF STC + +LLL L A+ LH +Q++RL +L++FK+
Sbjct: 249 ILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKA 305
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
++LLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+
Sbjct: 306 RSVLLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVE 365
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
L IE ++GK+L F +E EV+ RV +A+R A M+L G +++++E
Sbjct: 366 LFQRIEHLIGKKLPAFPTQEDEVMMLTERVAEAQRFARMELQQKGDKKRSRE 417
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/400 (45%), Positives = 275/400 (68%), Gaps = 5/400 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
++ +V+F LG+ + + C+ L + P+ +Q IP L+G D++GLA+TGSGKT AFA
Sbjct: 18 SEESVSFKSLGVVDVLCEACERLKWKSPSKIQREAIPVALQGSDIIGLAETGSGKTGAFA 77
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL +L + P + AL++TPTRELA+Q++EQF+ALGS + ++C VVVGG+D+++Q+ L
Sbjct: 78 IPILQKLLDSPQRLYALILTPTRELAFQISEQFEALGSAIGVKCAVVVGGIDMMSQSLML 137
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+PH++IATPGR+ LE KFLV+DEADR+L++ FE+E+ + + +P+
Sbjct: 138 AKKPHIIIATPGRLIDHLENTKGFN--LRALKFLVMDEADRILNMDFEQEVDKILKVIPR 195
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R T L+SATMT + L S E ++TV+ L+Q Y+F+P KDVYL+ V
Sbjct: 196 ERSTYLYSATMTKKVAKLQRASLQNPVKVEVSSKYQTVDKLQQYYLFVPAKFKDVYLVSV 255
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+++ S ++F STC + +L+L L A+ LH SQS+RL +L++FKS
Sbjct: 256 LNELAG---NSFMVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSR 312
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+IL+ATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FV+Q DV+L
Sbjct: 313 SILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVEL 372
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE ++GK+L ++ +EQEV+ + RV +A+R A M++
Sbjct: 373 YQRIEHLIGKKLPLYKTEEQEVMQLMERVTEAQRYAKMEM 412
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/412 (46%), Positives = 281/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 27 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 86
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 87 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 146
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 147 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 204
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 205 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 264
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S ++F STC + +LLL L A+ LH SQ++RL +L++FK+ +
Sbjct: 265 NELAG---NSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQTKRLGSLNKFKAKARS 321
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L
Sbjct: 322 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELF 381
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F +++EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 382 QRIEHLIGKKLPVFPTQDEEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 432
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/403 (47%), Positives = 278/403 (68%), Gaps = 6/403 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E
Sbjct: 161 GVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET 220
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L +PH+VIAT
Sbjct: 221 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIAT 280
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+T LFSAT
Sbjct: 281 PGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 338
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT +Q L + ++TVE L+Q Y+FIP KD YL+++L+++
Sbjct: 339 MTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG---N 395
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +ILLATDVAS
Sbjct: 396 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 455
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE ++GK
Sbjct: 456 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGK 515
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+L F +++EV+ RV +A+R A M+L + G E+K ++R+
Sbjct: 516 KLPVFPTQDEEVMMLTERVSEAQRFARMELREHG-EKKKRKRE 557
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/412 (46%), Positives = 279/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT + IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPVFPTQDDEVMMLAERVAEAQRFARMELREHG-EKKKRSRE 426
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/407 (46%), Positives = 279/407 (68%), Gaps = 6/407 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C++LG ++PT +Q IP L+G+D++GLA+TGSGKT AFALPIL
Sbjct: 20 TFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D+++Q+ +L +PH
Sbjct: 80 TLLESPQRLYALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPH 139
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+T
Sbjct: 140 IVIATPGRLIDHLENTKGFN--LRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 197
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L + ++TVE L+Q Y+FIP KD YL+++L+++
Sbjct: 198 LFSATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELA 257
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + ++LLL L A+ LH Q++RL AL++FK+ +ILLA
Sbjct: 258 G---NSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLA 314
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FV+Q DV+L IE
Sbjct: 315 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIE 374
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
++GK+L F +E+EV+ RV +A+R A ++L + G E+K + R
Sbjct: 375 HLIGKKLPAFPTQEEEVMMLNERVSEAQRFARIELREHG-EKKKRPR 420
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/413 (47%), Positives = 271/413 (65%), Gaps = 7/413 (1%)
Query: 49 PDPNSTTTDST--VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
P+ ST+T VTF LGL + ++ +++G + PT +Q +P LEG+D++G+A T
Sbjct: 4 PEDASTSTSPAPPVTFKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVAST 63
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKTAAFALPIL +L EDP G+ A V+ PTRELAYQ+++QF++LGS + RC V+VGGM
Sbjct: 64 GSGKTAAFALPILQKLWEDPKGLFACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGM 123
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D+ QA +L RPH+V+ATPGR+ LEE KFLVLDEADR+LD+ F +
Sbjct: 124 DMPAQAIALAKRPHIVVATPGRLMQHLEETKGFS--LRSIKFLVLDEADRLLDLDFGASI 181
Query: 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + +PK R T LFSATMT+ + L S + E ++TV TL Q Y+ +P
Sbjct: 182 DKILKVIPKERTTYLFSATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYLLMPLK 241
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KD YL+++++ + S I+F T LS++L L AV LH SQSQRL A
Sbjct: 242 DKDAYLIYLINSLAQ---NSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGA 298
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L +FKSG +L+ATDVASRGLDIP+VD+V+N+DIP + +DY+HRVGRTARAGR G +++
Sbjct: 299 LGKFKSGGRRVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSIT 358
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDG 459
VTQ DV+L+ IE VVGK++E + +E+ RV +A R+A +L + G
Sbjct: 359 LVTQYDVELVQRIEQVVGKKMELWPTDPEEIALLKERVSEAARLAATELREQG 411
>gi|405964769|gb|EKC30218.1| Putative ATP-dependent RNA helicase DDX47 [Crassostrea gigas]
Length = 1146
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/406 (46%), Positives = 278/406 (68%), Gaps = 10/406 (2%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + + C++L + PT +Q IP L+G DV+GLA+TGSGKT AFALPIL L +
Sbjct: 45 GIVDVLCEACEQLKWKTPTKIQKEAIPVALQGSDVIGLAETGSGKTGAFALPILQTLLDK 104
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALV+TPTRELA+Q++EQF+ALG+ + ++C V+VGG+D++TQ+ L +PH+VIAT
Sbjct: 105 PQRLYALVLTPTRELAFQISEQFEALGASIGIKCAVIVGGIDMMTQSLMLAKKPHIVIAT 164
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+LV+DEADR+L++ FE+E+ + + +P+ R TLLFSAT
Sbjct: 165 PGRLVDHLENTKGFN--LRSLKYLVMDEADRILNMDFEQEVDKILKAIPRERNTLLFSAT 222
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT + L S E ++TV+ L+Q Y+FIP KDVYL+++L+++
Sbjct: 223 MTKKVAKLQRASLQNPVRVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVYILNELAG---N 279
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S ++F STC + ++L+L L A+ LH SQS+RL AL++FKS +IL+ATDVAS
Sbjct: 280 SFMVFCSTCANTQRVALMLRNLGLTAIPLHGQMSQSKRLGALNKFKSKNRSILIATDVAS 339
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+VLN DIP + +DY+HRVGRTARAGR G+A++FV+Q DV+L IE ++GK
Sbjct: 340 RGLDIPHVDVVLNLDIPTHSKDYIHRVGRTARAGRSGVAITFVSQYDVELYQRIEHLIGK 399
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
+L ++ +E+EV+ + RV +A+R A M++ E + RKK++
Sbjct: 400 KLPLYKTEEEEVMQLMERVTEAQRYAKMEM-----NESERGRKKRR 440
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Amphimedon queenslandica]
Length = 451
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/399 (47%), Positives = 271/399 (67%), Gaps = 5/399 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF+ +G+ Q+C+E+G PT +Q IP LEG+DV+GLA+TGSGKT AF+LPIL
Sbjct: 26 LTFSDIGITSVLCQSCEEMGWTTPTDIQREAIPVALEGRDVIGLAETGSGKTGAFSLPIL 85
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L + P + ALV+TPTRELA+Q++EQF+ALG + ++C VVVGG+D++TQA +L +P
Sbjct: 86 QSLLDTPTRLFALVLTPTRELAFQISEQFEALGGRIGVKCAVVVGGVDMMTQALALAKKP 145
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HVVIATPGR+ LE K+LV+DEADR+L++ F EE+ + + L + R+T
Sbjct: 146 HVVIATPGRLVDHLENTKGFS--LRSVKYLVMDEADRILNMDFGEEVDKILKVLSRERRT 203
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
L+SATMT +Q L S + E ++TV+ L+Q YIFIP KD YL+ +L++
Sbjct: 204 YLYSATMTKKVQKLQRASLHNPIKVEVSTKYQTVDKLQQSYIFIPSKYKDCYLVSILNEF 263
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
S ++F STC + +++L L A+ L+ +Q +RL AL +FKS +IL+
Sbjct: 264 AG---NSFMVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGALSKFKSKSRSILI 320
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L I
Sbjct: 321 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITFVTQYDVELYQRI 380
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDD 458
E+++GK+L F E+EVLS RV +A+R A M++ +
Sbjct: 381 ESLIGKKLPLFPTVEEEVLSLAERVAEAQRYARMEMQSE 419
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/408 (46%), Positives = 275/408 (67%), Gaps = 7/408 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ + + C +LG + PT +Q IP L+G+D++GLA+TGSGKT AFALPIL
Sbjct: 26 SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + ALV+TPTRELA+Q++EQF+ALGS + + V+VGG+D ++Q+ +L +PH
Sbjct: 86 ALLDAPQRLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 145
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
++IATPGR+ LE KFLV+DEADR+L++ FE E+ + + +P++R+T
Sbjct: 146 IIIATPGRLVDHLENTKGFN--LRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTF 203
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L+++
Sbjct: 204 LFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELA 263
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + +LLL L A+ LH SQ++RL +L++FK+ +ILLA
Sbjct: 264 G---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLA 320
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L IE
Sbjct: 321 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIE 380
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
++GK+L F +E+EV+ RV +A+R A M+L + G EK + R
Sbjct: 381 HLIGKKLPAFPMQEEEVMMLTERVAEAQRFARMELREQG--EKKRSRN 426
>gi|167533121|ref|XP_001748241.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773361|gb|EDQ87002.1| predicted protein [Monosiga brevicollis MX1]
Length = 473
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 276/423 (65%), Gaps = 20/423 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L L+ W ++ C+ L RPT VQ C+P IL +DV A+TGSGKTAAFALPIL
Sbjct: 1 MSFEDLKLSSWLIRQCRNLNFTRPTAVQQACVPAILNDEDVYAAAKTGSGKTAAFALPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L+ DPYGV A+V+TPTRELA+Q+++QF++LG + +R +VGG+D + QA L RP
Sbjct: 61 EQLSHDPYGVYAVVLTPTRELAFQISDQFQSLGKPIGVRVATIVGGIDSIKQAVELSRRP 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCLPKNRQ 238
H+++ATPGR+ V LVLDEADR++ + + L V+ LP+ RQ
Sbjct: 121 HIIVATPGRLAV---------------HTLVLDEADRLMTNETLQGHLDVILDALPEERQ 165
Query: 239 TLLFSATMTSDLQTLLELSANKAYF-YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSAT+ + + ++ F Y + TV TL+Q+Y+F+P +++ YL+H+L
Sbjct: 166 NLLFSATLLEEPSGKISQQLHRDLFRYSEIKEEATVTTLRQRYVFLPAHMRFPYLIHILR 225
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFK--SQSQRLSALHRFKSGQA 355
++ D S ++FV TCR C L+L L ELD ALHS SQ RL ALH+FKS
Sbjct: 226 QLHDDKNNSIVLFVPTCRLCEELALTLRELDLRCTALHSQARMSQKARLDALHKFKSSFI 285
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
ILLATDVASRGLDIPTV V+NY++PR P DYVHRVGRTARAGRGG+A++ + + D++L
Sbjct: 286 HILLATDVASRGLDIPTVTYVINYNVPRAPEDYVHRVGRTARAGRGGMAITLMDERDIEL 345
Query: 416 IHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
+ IE + +L + + K++E++ + ++ ARR A ++L++ GF+E+ + RK + M
Sbjct: 346 LQAIEEHINVKLTAYDDIKDEEIVQSMNKINIARRAAELQLLESGFDERLQARKAKLKLM 405
Query: 475 LAE 477
LA
Sbjct: 406 LAN 408
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/442 (45%), Positives = 292/442 (66%), Gaps = 14/442 (3%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ +TF LG+ + + C L ++PT VQ +P + +D++GLA+TGSGKTAAFA+
Sbjct: 21 NDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAI 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL L E P + ALV+TPTRELA+Q+ EQF+ALG+ + + V+VGG+D +TQ+ +L
Sbjct: 81 PILQALLETPQKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGIDTVTQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
RPHV++ATPGR+ LE K+LV+DEADR+L++ FE EL + + +PK
Sbjct: 141 KRPHVIVATPGRLVDHLENTKGFN--LRALKYLVMDEADRILNMDFEVELEKILKVIPKE 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T L+SATMT + L S E ++TV+ LKQ YIFIP K+ YL+++L
Sbjct: 199 RRTYLYSATMTKKVAKLERASLVDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLIYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ +M ++AI+F STC S +L+L +L AV LH SQ++RL +L++FKS +T
Sbjct: 259 N---EMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKAST 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ TDVASRGLDIP VD+VLNYD+P +DYVHRVGRTARAGR G+AV+FVTQ DV++
Sbjct: 316 VLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIY 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKML- 475
+IE ++GK+L FE E +V+ + RV +A+++A ++ + EEK K RK+++
Sbjct: 376 QKIERLIGKKLPLFETVENDVMLLVERVEEAQKLAKQEMKE--MEEK-KGRKRRQFDDDD 432
Query: 476 -----AEKGSLKKRSEKRKKSG 492
AE+ S ++ KRK+ G
Sbjct: 433 DEVNDAEESSAFRKKLKRKQKG 454
>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
Length = 463
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/450 (44%), Positives = 291/450 (64%), Gaps = 13/450 (2%)
Query: 49 PDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
P + + +TF LG+ + + C L ++PT VQ +P + +D++GLA+TGS
Sbjct: 13 PTQSVEEQNDDITFQQLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGS 72
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKTAAFA+PIL L E P + ALV+TPTRELA+Q+ EQF+ALG+ + + V+VGG+D
Sbjct: 73 GKTAAFAIPILQALLETPQKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDT 132
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+TQ+ +L RPHV++ATPGR+ LE K+LV+DEADR+L++ FE E+
Sbjct: 133 VTQSLALAKRPHVIVATPGRLVDHLENTKGFN--LRALKYLVMDEADRILNMDFEVEVEK 190
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +PK R+T L+SATMT + L S N E ++TV+ LKQ YIFIP K
Sbjct: 191 ILKVIPKERRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYK 250
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ +M ++AI+F STC S +L+L +L AV LH SQ++RL +L+
Sbjct: 251 EAYLVYILN---EMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLN 307
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FKS +T L+ TDVASRGLDIP VDLVLNYD+P +DYVHRVGRTARAGR G+AV+FV
Sbjct: 308 KFKSKTSTTLICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFV 367
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV++ IE ++GK+L FE E +V+ + RV +A+++A ++ + EEK ++
Sbjct: 368 TQYDVEIYQRIERLIGKKLPLFETVENDVMLLMERVEEAQKLAKREMKE--MEEKKGRKR 425
Query: 469 KQKLKML------AEKGSLKKRSEKRKKSG 492
KQ AE+ + ++ KRK+ G
Sbjct: 426 KQFDDDDDDEVNDAEESNAFRKKLKRKQKG 455
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/402 (48%), Positives = 271/402 (67%), Gaps = 7/402 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+T+ LGL + +TC +L + PT +Q IP L+GKDV+GLA+TGSGKTAAFALPIL
Sbjct: 18 ITWKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPIL 77
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E+P AL++TPTRELA+Q++EQF ALGS + ++ V+VGGMD+ Q L +P
Sbjct: 78 QALLENPQRYFALILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKP 137
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++IATPGR+ LE + KFLV+DEADR+L++ FE E+ + + +P+ R+T
Sbjct: 138 HIIIATPGRLVDHLENTKGFN--LRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 195
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+++
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEL 255
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
S +IF TC + +LLL L AV LH +Q++R++AL +FK+ +IL+
Sbjct: 256 AG---NSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILI 312
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L I
Sbjct: 313 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI 372
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL--MDDG 459
E ++ KQL F +E+EV+ RV +A+R+ M + M+D
Sbjct: 373 EQLISKQLPLFPTEEEEVMLLQERVSEAQRIVKMDMKNMEDN 414
>gi|358060304|dbj|GAA94058.1| hypothetical protein E5Q_00705 [Mixia osmundae IAM 14324]
Length = 447
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/411 (46%), Positives = 272/411 (66%), Gaps = 6/411 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T F+ LGL E + C++LG ++P+ +Q IP L+G+D++ LAQTGSGKTAAFALPI
Sbjct: 11 TADFSSLGLIEPLCKVCEQLGYKKPSEIQAQSIPFALQGRDLVALAQTGSGKTAAFALPI 70
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L +P A V+ PTRELAYQ++EQF+ALGS + +RC V+VGGMD++TQ+ +L R
Sbjct: 71 LQALWNEPSPFFACVLAPTRELAYQISEQFQALGSTIGVRCAVIVGGMDMMTQSIALSKR 130
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR++ LE K+LV+DEADR+LD+ F + + + +P+ R
Sbjct: 131 PHIIVATPGRLQDHLENTKGFS--LKAIKYLVMDEADRLLDMDFGPVIDTILKIIPRERN 188
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ + L S + E + TV+TL Q+Y F P K+ YL+++ ++
Sbjct: 189 TFLFSATMTTKVAKLQRASLSNPVKVEVSTKYSTVDTLVQEYCFFPFKHKETYLVYLCNE 248
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ +S I+FV T LSL+L L AV LH +QS RL AL++FKSG IL
Sbjct: 249 LAG---KSIIVFVRTVHDAQRLSLILRTLGFPAVPLHGQLTQSNRLGALNKFKSGGRQIL 305
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP VD V+NYDIP + +DY+HRVGRTARAGR G +++ VTQ DV+L+
Sbjct: 306 VATDVASRGLDIPMVDYVVNYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQR 365
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGF-EEKAKERK 468
IE VVGK++ EF ++ VL RV +A R A ++ + GF EK ++++
Sbjct: 366 IEGVVGKKMSEFAHDKEAVLVLSERVTEAAREAAREIREKGFGGEKGRDKR 416
>gi|19113586|ref|NP_596794.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654494|sp|Q9HGM5.1|DBP8_SCHPO RecName: Full=ATP-dependent RNA helicase dbp8
gi|9929273|emb|CAC05248.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
pombe]
Length = 453
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/438 (44%), Positives = 290/438 (66%), Gaps = 10/438 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LG++ W + T K L + PT +Q I +ILEG++ +G A+TGSGKTAAFALPI+
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ ++DP G+ AL++TPTRELA Q+ EQF ALG+ L+L+ ++VGGMD++ Q+ L RPH
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 181 VVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNR 237
VV+ATPGR+ L+ + + R KFLV+DEADR+L F ++L F LP ++R
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 238 QTLLFSATMTSDLQTL-LELSANKA---YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYL 292
QTLLF+AT+T ++ L + N + YE + TL+Q YIF+ V++ YL
Sbjct: 188 QTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYL 247
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+H+L+ E+ +SAIIFV+ R+ L+ +L L+ LHS Q +R+++L RF++
Sbjct: 248 VHLLTIPENAK-KSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRA 306
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIP+V LV+N+D+PR P DY+HRVGRTARAGR G ++S VT+ D
Sbjct: 307 EAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
Query: 413 VDLIHEIEAVVGKQLEEFE-CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
VDL+H IE VG +L E+E E ++L I V A+R A+++++D GF E+ ++R +++
Sbjct: 367 VDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKR 426
Query: 472 LKMLAEKGSLKKRSEKRK 489
L LK K+K
Sbjct: 427 LMANGISNKLKNSGRKKK 444
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 274/399 (68%), Gaps = 5/399 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ TVTF LG+ + + C+ LG + P+ +Q IP L+G DV+GLA+TGSGKT +FAL
Sbjct: 24 EETVTFKSLGVTDVLCEACEILGWKAPSKIQKESIPVALQGSDVIGLAETGSGKTGSFAL 83
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
P+L L ++P + LV+TPTRELA+Q++EQF+ALG+ + ++C V+VGGMD++TQ+ L
Sbjct: 84 PVLQTLLDNPQRMYCLVLTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMMTQSMVLA 143
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE+E+ + + +PK
Sbjct: 144 KKPHIIIATPGRLVDHLENTKGFN--LRALKYLVMDEADRILNMDFEQEVNKILKVIPKE 201
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T L+SATMTS + L E ++TV+ L+Q Y FIP KDVYL+++L
Sbjct: 202 RKTYLYSATMTSKVAKLQRACLKNPVKVEVSTKYQTVDKLQQSYCFIPAKFKDVYLVYIL 261
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S I+F STC + ++L+L L A+ LH +Q++RL AL++FKS +
Sbjct: 262 NELAG---NSFIVFCSTCANTQRVALMLRNLGMTAIPLHGQMNQTKRLGALNKFKSKSRS 318
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVASRGLDIP V++V+N+DIP + +DY+HRVGRTARAG+ G A++ VTQ DV+L
Sbjct: 319 ILIATDVASRGLDIPHVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITLVTQYDVELY 378
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE ++GK+L ++ +++EV+ RV +A+R A M++
Sbjct: 379 QRIEQLIGKKLPLYKTEQEEVMMMTERVTEAQRYAKMEM 417
>gi|351713807|gb|EHB16726.1| Putative ATP-dependent RNA helicase DDX49 [Heterocephalus glaber]
Length = 453
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/393 (49%), Positives = 263/393 (66%), Gaps = 6/393 (1%)
Query: 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL 155
EG+D LG A+TGSGKTAAF LPIL +L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L
Sbjct: 18 EGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL 77
Query: 156 HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215
L+ ++VGGMD++ QA L +PHVVIATPGR+ L + FLV+DEAD
Sbjct: 78 GLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFH--IKKIHFLVMDEAD 135
Query: 216 RVLDVG---FEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKT 272
R+L+ G F +L + +P +RQTLLFSAT+T L+ L L+ N+ +F+ A T
Sbjct: 136 RLLEQGCTDFTADLETILAAVPAHRQTLLFSATLTDTLRELQGLATNQPFFWAAQAPVST 195
Query: 273 VETLKQQYIFIPKNVKDVYLMHVLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEA 331
VE L Q+Y+ +P+ VKD YL+H++ +D S IIF +TC++C +L ++L +
Sbjct: 196 VEQLDQRYLLVPEKVKDAYLVHLVQSFQDEHEDWSIIIFTNTCKTCQILCMMLRRFNFPT 255
Query: 332 VALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHR 391
VALHS Q +R +AL +FKS IL+ATDVASRGLDIPTV +V+N++ P P+ Y+HR
Sbjct: 256 VALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHR 315
Query: 392 VGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
VGRTARAGR G A++ VTQ D+ L+H IE + KQLEEF KE EVL +T+V RR
Sbjct: 316 VGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKQLEEFSVKEAEVLQILTQVNVVRREC 375
Query: 452 TMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKR 484
+KL F+EK + K+++L + + L+ R
Sbjct: 376 EIKLEAAHFDEKKEINKRKQLILEGKDPDLQAR 408
>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 443
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/409 (45%), Positives = 275/409 (67%), Gaps = 5/409 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D+ VTF LG+ V+ CK+LG + PT +Q IP+ L GKD++GLAQTGSGKTAAF++
Sbjct: 10 DTVVTFEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSI 69
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
P+L L P G+ LV+ PTRELA Q+++Q +ALG+ + ++C V+VGG+D ++Q+ +L
Sbjct: 70 PMLQALLAKPSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALA 129
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+++ TPGR+ LE K+ V+DEADR+L + FEEE+ + + +PK+
Sbjct: 130 KKPHIIVGTPGRVVYHLENTKGFN--LKTLKYFVMDEADRLLGMDFEEEINTILKVIPKD 187
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R T LFSATMTS + L S N + + TV+TL+Q+YIFIP K+ YL ++L
Sbjct: 188 RNTFLFSATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYIFIPYKHKECYLTYIL 247
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S IIF STC + L+++L L +A+ ++ QS+RLS+L++FK+
Sbjct: 248 NELAG---NSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMD 304
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIP+VDLV+NYD+P ++Y+HRVGRTARAGR G AV+ VTQ DV++
Sbjct: 305 ILVATDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIY 364
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
IE + ++LEEF +++ VL RV +A RVAT ++ + G EK K
Sbjct: 365 LRIEHALEQKLEEFPTEQESVLVFSERVNEAIRVATNEIKEAGLSEKEK 413
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/403 (47%), Positives = 276/403 (68%), Gaps = 6/403 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E
Sbjct: 47 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET 106
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L +PH+VIAT
Sbjct: 107 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIAT 166
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+TLLFSAT
Sbjct: 167 PGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTLLFSAT 224
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT +Q L + ++TVE L+Q Y+FIP KD YL+++L+++
Sbjct: 225 MTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG---N 281
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +ILLATDVAS
Sbjct: 282 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 341
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE ++GK
Sbjct: 342 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGK 401
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 402 KLPVFPTEDDEVMMLTERVTEAQRFARMELREHG-EKKKRTRE 443
>gi|225710224|gb|ACO10958.1| Probable ATP-dependent RNA helicase DDX49 [Caligus rogercresseyi]
Length = 454
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/403 (46%), Positives = 270/403 (66%), Gaps = 6/403 (1%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LGL W + C+ +G++ P+PVQ +PKIL+G++ +G+A+TGSGKTAAFALPIL L+E
Sbjct: 4 LGLKPWLSKQCEAIGLKSPSPVQRETVPKILDGQNGIGIAKTGSGKTAAFALPILDALSE 63
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
DPYG+ ALV+TPTRELAYQ+A+ FK LG L+++ +++GG D++ Q L + PH+VIA
Sbjct: 64 DPYGIYALVLTPTRELAYQIADTFKILGKPLNVKVSIIIGGRDMVLQGSELASSPHIVIA 123
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGR+ L P+ + KFLV+DEADR+L+ GF+E + +F +P++RQTLLF+A
Sbjct: 124 TPGRLADHLNTHSQSSPL-KKIKFLVIDEADRLLEGGFDEAIGRIFASIPRSRQTLLFTA 182
Query: 245 TMTSDLQTLLELSANKAYFY----EAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
T + L+ L+ ++ K +FY E TV TL Q Y+ P + +D YL+ VL K++
Sbjct: 183 THSESLKELIVANSEKEHFYYREGEDDASGLTVNTLDQHYVLTPADFRDAYLIGVLMKIQ 242
Query: 301 DMGIRSA-IIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ IIF TC+ +LSL L +L VALHS K Q +RL AL RF+S A IL+
Sbjct: 243 KESPNASFIIFARTCKIAQILSLTLGKLGFSNVALHSMKPQRERLEALSRFRSHLAKILI 302
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP V+ V+N++IP +YVHRVGRTARAGR G A+S +T +DV L+ I
Sbjct: 303 ATDVASRGLDIPHVEYVINHNIPTEATEYVHRVGRTARAGRRGTAISLLTPHDVLLLESI 362
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
E ++G +L E+ + + + +V RR ++L + F+E
Sbjct: 363 EELIGSKLSEYSVDTKNIFEIVVQVNVTRRETDIRLTEVDFDE 405
>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
Length = 486
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/411 (46%), Positives = 273/411 (66%), Gaps = 7/411 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+++ C LG +P+ +Q +P LEGKDV+GLA+TGSGKT AFA+P+L
Sbjct: 45 TFAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P LV+TPTRELA+Q+ +QF+ALGSG+ L V+VGG+D+ QA +L RPH
Sbjct: 105 SLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPH 164
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE KFL++DEADR+L++ FE EL + + +PK R+T
Sbjct: 165 IIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTY 222
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L S +KTV+ LKQ YIFIP K+ YL+++L+ E
Sbjct: 223 LFSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKYKETYLVYLLN--E 280
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
G SAI+F +TC + ++++L +L +AV LH SQ +RL +L++FKS IL+
Sbjct: 281 HAG-NSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVC 339
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP VD+V+NYD+P +DYVHRVGRTARAGR GLA++ VTQ DV+ +IE
Sbjct: 340 TDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKIE 399
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
A +GK+L+E++C E EV+ + R +A A +++ + +EK K KK++
Sbjct: 400 ANLGKKLDEYKCVENEVMVLVERTQEAMENAKVEMKE--MDEKRKSGKKRR 448
>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
Length = 451
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/409 (45%), Positives = 277/409 (67%), Gaps = 6/409 (1%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S+VTF LG+ E C++LG + PTP+Q +P L+ KD++GLA+TGSGKT AF LP
Sbjct: 10 SSVTFKELGVCEELSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGKTLAFGLP 69
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL L +P AL+++PTREL Q+ E F+A+G+ + L+ V++GGMD L QAK+L
Sbjct: 70 ILQHLLANPQPYYALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQ 129
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+PH++I TPG+I LE + KFLVLDEAD++L++ FE E+ + +PK R
Sbjct: 130 KPHIIIGTPGKILYHLENTKGFN--LKQLKFLVLDEADKLLNMDFEREINAILDIIPKER 187
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATMT+ + L S E ++TV TL+Q Y+F+P K+ YL+++L+
Sbjct: 188 NTYLFSATMTNKVSKLQRASLKDPVKIEVSSKYQTVSTLQQNYLFVPDKYKETYLVYLLN 247
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ + ++I+FV+TC+ ++LLL L +A+A+H SQ++RLS+ ++FKS ++ +
Sbjct: 248 ELAGL---TSIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNL 304
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIP VDLVLN+DIP+ ++YVHRVGRTARAG+ G A+S VTQ DV++
Sbjct: 305 LIATDVASRGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQ 364
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
+IE ++ K+L ++ +E +V+ RV +A R+AT +L D E+K K+
Sbjct: 365 KIEQLIEKELSQYPLEESDVMVFYERVQEANRIATQEL-KDLLEKKVKK 412
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/440 (44%), Positives = 287/440 (65%), Gaps = 8/440 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T+ VTF LGL + + C++LG + P+ +Q +P + +D++GLA+TGSGKT AFA
Sbjct: 6 TEQAVTFKSLGLNDALCEACEKLGWKNPSKIQCEALPIAFQKRDIIGLAETGSGKTGAFA 65
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL L P + ALV+TPTRELAYQ++EQF+ALGS + ++C V+VGGMD+++Q+ +L
Sbjct: 66 LPILQALLATPQRLFALVLTPTRELAYQISEQFEALGSSIGVKCAVIVGGMDMMSQSIAL 125
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP- 234
+PH+VIATPGR+ LE ++LV+DEADR+L++ FE +L + + LP
Sbjct: 126 AKKPHIVIATPGRLVDHLENTKGFS--LRSIQYLVMDEADRILNMDFEVDLDKILKILPP 183
Query: 235 -KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
R T L+SATMT + L S E + + TV+ L+Q Y+FIP KDVYL+
Sbjct: 184 SSTRSTYLYSATMTKKVAKLQRASLRDPIKIEVSDKYATVDKLQQTYLFIPSKFKDVYLV 243
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
+L+ DM +S I+F STC + L+LL L V LH SQ++RL AL++FK
Sbjct: 244 SILN---DMSGKSIIVFASTCTTTLRLALLTRNLGFTTVPLHGQMSQTKRLGALNKFKGK 300
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+IL+ATDVASRGLDIP VD+V+NYDIP + +DY+HRVGRTARAGR G +++FVTQ D+
Sbjct: 301 ARSILIATDVASRGLDIPHVDVVINYDIPNHSKDYIHRVGRTARAGRSGKSITFVTQYDI 360
Query: 414 DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
+L IE ++GKQL ++ +E EV++ + RV +A R A ++ M + +E+ R+K+K K
Sbjct: 361 ELYQRIEFLIGKQLPQYVTQEDEVMTLLERVNEADRQARIQ-MKEIEDERKDHRQKRKKK 419
Query: 474 MLAEKGSLKKRSEKRKKSGE 493
++ K+K+ E
Sbjct: 420 EQNNHDDIQVEQPKKKRKKE 439
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/395 (47%), Positives = 261/395 (66%), Gaps = 5/395 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ + + +G +P+ +Q IP L GKD++GLA+TGSGKT AF +PIL
Sbjct: 32 SFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQ 91
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L +P + ALV+ PTRELAYQ+ EQF+ALG+ + L+C VVGG+D++ Q +L +PH
Sbjct: 92 SLLRNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPH 151
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VVIATPGR+ LE KFLVLDEADR+L + FEEE+ + Q +P R T
Sbjct: 152 VVIATPGRLVDHLENTKGFS--LRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAERNTY 209
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMTS ++ L S E F T ETLKQ Y+FIP KD YL +VL+++
Sbjct: 210 LFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVA 269
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+S +IF STC ++L+L L +A+ LH Q RL AL++FK+ +L+
Sbjct: 270 G---QSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVC 326
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP+VD+V+NYDIP + +DY+HRVGRTARAGR G+A+SFVTQ DV+L IE
Sbjct: 327 TDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIE 386
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
++G +L+ + C+E+ VL RV +A+R+AT+++
Sbjct: 387 HLLGTKLDAYPCEEETVLVMSERVNEAQRIATIEM 421
>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 463
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/428 (46%), Positives = 269/428 (62%), Gaps = 11/428 (2%)
Query: 44 EKFTNPD-PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLG 102
E NP N TF LG+ + LG +P+ +Q IP L G+D++G
Sbjct: 12 ESIINPSGDNCDGFSGDQTFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIG 71
Query: 103 LAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
LA+TGSGKT AF +PIL L P + ALV+ PTRELAYQ++EQF+ALG+ + L+C V
Sbjct: 72 LAETGSGKTGAFVIPILQSLLRSPQRLYALVLAPTRELAYQISEQFEALGASIGLKCACV 131
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
VGG+D++ Q +L +PH++IATPGR+ LE KFLVLDEADR+L + F
Sbjct: 132 VGGIDMMNQQIALARKPHIIIATPGRLVDHLENTKGFS--LRTIKFLVLDEADRMLSMDF 189
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF 282
EEE+ + Q +P R T LFSATMTS + L S E F T E L+Q Y+F
Sbjct: 190 EEEINQIVQLMPSERNTYLFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLF 249
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQ 342
IP KD YL ++L+++ +S +IF STC ++L+L L +A+ LH SQ
Sbjct: 250 IPAKFKDCYLSYILNEVAG---QSILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPN 306
Query: 343 RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402
RL AL++FK+ IL+ TDVASRGLDIP+VD+V+NYDIP + +DY+HRVGRTARAGR G
Sbjct: 307 RLGALNKFKAKTRKILVCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAG 366
Query: 403 LAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
+AVSFVTQ DV+L IE ++GK+L+ + C EQ VL RV +A+R+AT ++ +E
Sbjct: 367 IAVSFVTQYDVELYQRIEFLLGKKLDAYPCDEQTVLIMQERVGEAQRIATNEM-----KE 421
Query: 463 KAKERKKQ 470
A +R K+
Sbjct: 422 LASKRGKR 429
>gi|389748758|gb|EIM89935.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 452
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/410 (45%), Positives = 272/410 (66%), Gaps = 5/410 (1%)
Query: 48 NPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
+P+ ST+ + +F +GL + ++ ++LG + PT +Q +P LEG+D++G+A TG
Sbjct: 3 SPEEASTSAANPPSFKSIGLIDPLLEAVEQLGYKTPTDIQAEALPHALEGRDIIGVASTG 62
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
SGKTAAFALPI+ L DP G+ A VI PTRELAYQ+++QF+ALGSG+ +RC V++GGMD
Sbjct: 63 SGKTAAFALPIIQALWNDPKGLFACVIAPTRELAYQISQQFEALGSGIGVRCAVIIGGMD 122
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
+++Q+ +L +PH+++ATPGR+ LE KF VLDEADR+LD+ F ++
Sbjct: 123 VVSQSIALAKKPHIIVATPGRLNYHLENTKGFS--LRGLKFFVLDEADRLLDMDFGPDID 180
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287
+ + +PK R T LFSATMT+ + L S E + TV TL Q Y+F+P +
Sbjct: 181 KILKVIPKERTTYLFSATMTTKVAKLQRASLQNPVRVEVSSKYSTVSTLLQYYLFMPLSH 240
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
K+V+L+++ + + S +IF T LS++L L AV LH SQSQRL AL
Sbjct: 241 KEVHLVNLANTLAQ---NSMMIFTRTVHDAQKLSIILRTLGFPAVPLHGQLSQSQRLGAL 297
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
+FKSG +IL+ATDVASRGLDIP+VD+V+N+DIP + +DY+HRVGRTARAGR G +++
Sbjct: 298 SKFKSGGRSILVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITL 357
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
VTQ D++LIH IE V GK+++ + + E+ RV +A R+A ++ D
Sbjct: 358 VTQYDIELIHRIEKVTGKKMDLWPTDKDEIALLRERVEEASRLAVNEMKD 407
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 274/425 (64%), Gaps = 12/425 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL E + C+ L + PTP+QT IP L+ KD++GLAQTGSGKTAAFALP+L
Sbjct: 59 ITFASLGLIEPLCKACESLNFKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVL 118
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L + P A V+ PTRELAYQ+++QF ALGS + ++ V+VGGMD+++QA +L RP
Sbjct: 119 QSLWDSPSAFFACVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRP 178
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HV++ATPGR+ LE +FL++DEADR+LD+ F + + + +PK R+T
Sbjct: 179 HVIVATPGRLHDHLEHTKGFS--LRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERKT 236
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT+ + L S N E + TV L Q Y+F+P KD YL+++ +++
Sbjct: 237 YLFSATMTTKVAKLQRASLNNPVKVEVSAKYDTVSALVQTYLFLPFKHKDTYLVYLANEL 296
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+S I+F T LSL+L L AV LH SQS RL AL++FKSG ++L+
Sbjct: 297 SG---KSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLLV 353
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP VD V+N+D+P +DY+HRVGRTARAGR G +++ VTQ DV+L+ I
Sbjct: 354 ATDVASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRI 413
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD-----DGFEEKAK--ERKKQKL 472
E V+GK++ EFE ++++V+ RV +A R ++ + + F K K E K K+
Sbjct: 414 EGVIGKKMNEFEHQKEQVMVLGERVGEAAREVAREMREIERNGNKFNRKRKSGEMKPSKI 473
Query: 473 KMLAE 477
KM+ E
Sbjct: 474 KMVIE 478
>gi|225710312|gb|ACO11002.1| Probable ATP-dependent RNA helicase DDX49 [Caligus rogercresseyi]
Length = 454
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/403 (46%), Positives = 269/403 (66%), Gaps = 6/403 (1%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LGL W + C+ +G++ P PVQ +PKIL+G++ +G+A+TGSGKTAAFALPIL L+E
Sbjct: 4 LGLKPWLSKQCEAIGLKSPAPVQRETVPKILDGQNGIGIAKTGSGKTAAFALPILDALSE 63
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
DPYG+ ALV+TPTRELAYQ+A+ FK LG L+++ +++GG D++ Q L + PH+VIA
Sbjct: 64 DPYGIYALVLTPTRELAYQIADTFKILGKPLNVKVSIIIGGRDMVLQGSELASSPHIVIA 123
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGR+ L P+ + KFLV+DEADR+L+ GF+E + +F +P++RQTLLF+A
Sbjct: 124 TPGRLADHLNTHSQSSPL-KKIKFLVIDEADRLLEGGFDEAIGRIFASIPRSRQTLLFTA 182
Query: 245 TMTSDLQTLLELSANKAYFY----EAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
T + L+ L+ ++ K +FY E TV TL Q Y+ P + +D YL+ VL K++
Sbjct: 183 THSESLKELIVANSEKEHFYYREGEDDASGLTVNTLDQHYVLTPADFRDAYLIGVLMKIQ 242
Query: 301 DMGIRSA-IIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ IIF TC+ +LSL L +L VALHS K Q +RL AL RF+S A IL+
Sbjct: 243 KESPNASFIIFARTCKIAQILSLTLGKLGFSNVALHSMKPQRERLEALSRFRSHLAKILI 302
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP V+ V+N++IP +YVHRVGRTARAGR G A+S +T +DV L+ I
Sbjct: 303 ATDVASRGLDIPHVEYVINHNIPTEATEYVHRVGRTARAGRRGTAISLLTPHDVLLLESI 362
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
E ++G +L E+ + + + +V RR ++L + F+E
Sbjct: 363 EELIGSKLSEYSVDTKNISEIVVQVNVTRRETDIRLAEADFDE 405
>gi|17555296|ref|NP_499069.1| Protein T26G10.1 [Caenorhabditis elegans]
gi|465975|sp|P34580.1|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
gi|3880293|emb|CAA82362.1| Protein T26G10.1 [Caenorhabditis elegans]
Length = 489
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/411 (45%), Positives = 274/411 (66%), Gaps = 7/411 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LG+++ C+ LG +P+ +Q +P L+GKDV+GLA+TGSGKT AFA+P+L
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P LV+TPTRELA+Q+ +QF+ALGSG+ L V+VGG+D+ QA +L RPH
Sbjct: 105 SLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE KFL++DEADR+L++ FE EL + + +P+ R+T
Sbjct: 165 IIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTY 222
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L S +KTV+ LKQ YIF+P K+ YL+++L+ E
Sbjct: 223 LFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLN--E 280
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
G SAI+F +TC + ++++L +L +AV LH SQ +RL +L++FKS IL+
Sbjct: 281 HAG-NSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVC 339
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP VD+V+NYD+P +DYVHRVGRTARAGR G+A++ VTQ DV+ +IE
Sbjct: 340 TDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIE 399
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
A +GK+L+E++C E EV+ + R +A A +++ + +EK K KK++
Sbjct: 400 ANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKE--MDEKKKSGKKRR 448
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/403 (45%), Positives = 272/403 (67%), Gaps = 6/403 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D TF LG+ ++ C +G ++PT +Q IP + G+D++GLAQTGSGKTAAFA+
Sbjct: 79 DENTTFDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAI 138
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL +L + P + AL+++PTRELA+Q+++QF+ALG+ + ++C V+VGGMD++ QA L
Sbjct: 139 PILQQLLQSPQPLFALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLA 198
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+++ TPGR+ LE KFLV+DEADR+L + FEEE+ + + +PKN
Sbjct: 199 RKPHIIVGTPGRVMYHLENTKGFH--LKALKFLVMDEADRLLSMDFEEEINKILKVIPKN 256
Query: 237 RQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R T LFSATMTS + L + S N A + TV+TL QQY FIP KD YL ++
Sbjct: 257 RNTYLFSATMTSKVAKLQKASLVNPIKVQVASTKYSTVDTLVQQYCFIPYQHKDCYLTYI 316
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+++ SAI+FV+TC + + LS++L L A+ ++ Q++RL++L++FKS
Sbjct: 317 LNELSG---NSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVK 373
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP+V LV+NYDIP ++YVHRVGRTARAG+ G A++ VTQ DV++
Sbjct: 374 NILVATDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEV 433
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDD 458
IE + K+LEEF + VL + V +A R+A++++ +D
Sbjct: 434 YQRIEFALSKKLEEFPSESSSVLVFLEAVNEAARLASLEVKED 476
>gi|402218296|gb|EJT98373.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 476
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 269/418 (64%), Gaps = 8/418 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D VTF+ LGL E V CK+L +RPTP+Q IP LEGKD++GLA+TGSGKTAAFAL
Sbjct: 36 DPNVTFSSLGLIEPLVDACKQLNFKRPTPIQAAAIPPALEGKDIIGLAETGSGKTAAFAL 95
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL +L DP +V+ PTRELAYQ+++QF+ALGS + +RC V++GG+ ++ QA +L
Sbjct: 96 PILQKLWHDPKPFFCVVLAPTRELAYQISQQFEALGSTIGVRCAVLIGGVKMVPQAVALS 155
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
RPH+V+ATPGR++ LE K+LV+DEADR+LD+ F + + + +P+
Sbjct: 156 KRPHIVVATPGRLQDHLENTKGFS--LRGLKYLVMDEADRLLDLDFGPIIDTLLKAIPRQ 213
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R T+LFSATMT+ + L S E ++TV TL Q Y+ P VK+ L+H+L
Sbjct: 214 RNTMLFSATMTTKVAKLQRTSLRNPVKVEVSSKYQTVSTLLQTYVLTPAAVKEPQLVHLL 273
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ + + S I+FV T L+L L L A+ LH SQ +RL A+ RFK+
Sbjct: 274 TTVSGL---STIVFVRTIHDATKLTLALRNLGFPAIPLHGDISQDKRLGAISRFKAEPGA 330
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVASRGLD+P VD V+NYD+P +DY+HRVGRTARAGR G A+S VTQ DV+L+
Sbjct: 331 ILVATDVASRGLDMPKVDAVINYDLPTNSKDYIHRVGRTARAGRAGKAISIVTQYDVELL 390
Query: 417 HEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVAT--MKLMDDGFEEKAKERKKQK 471
IE V+GK+LE + E +EV RV +A R AT MK + + + RK+Q+
Sbjct: 391 QRIEHVIGKKLEAYGETTREEVEMLRERVGEAVRAATIQMKEQEGKRTQGGRGRKRQR 448
>gi|357627854|gb|EHJ77400.1| hypothetical protein KGM_01171 [Danaus plexippus]
Length = 473
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/415 (46%), Positives = 278/415 (66%), Gaps = 7/415 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C EL + P+ +Q IP L+GKD++GLA+TGSGKT AFAL
Sbjct: 34 EDTGTFQELGVVDVLCEACAELKWKHPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFAL 93
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL L E+P AL++TPTRELA+Q++EQF+ALG+ + ++C V+VGGMD++ QA L
Sbjct: 94 PILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALILS 153
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P+
Sbjct: 154 KKPHIIIATPGRLVDHLENTKGFN--LKALKYLVMDEADRILNMDFEVEVDKILRVIPRE 211
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L
Sbjct: 212 RRTYLFSATMTKKVQKLQRASLQDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHIL 271
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ ++ S I+FVSTC ++LLL L AV LH SQ +RL+AL++FKS +
Sbjct: 272 N---ELAGNSFIVFVSTCAGALRVALLLRALGVGAVPLHGQMSQQKRLAALNKFKSKARS 328
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ TDVASRGLDIP VD+V+N DIP + +DY+HRVGRTARAGR G A++FV+Q DV+L
Sbjct: 329 VLICTDVASRGLDIPHVDVVVNLDIPLHSKDYIHRVGRTARAGRAGKAITFVSQYDVELY 388
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
IE ++GKQL ++ E EV+ RV +A+R+ +++ + E+K R K++
Sbjct: 389 QRIEQLIGKQLPLYKTDENEVMVLQERVAEAQRLTKIEMKE--LEDKKGSRGKKR 441
>gi|213403328|ref|XP_002172436.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
yFS275]
gi|212000483|gb|EEB06143.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
yFS275]
Length = 456
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/442 (43%), Positives = 293/442 (66%), Gaps = 10/442 (2%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T + TF LG++ W V+T + + ++ PTP+Q I K+LEG D +G A+TGSGKT AF
Sbjct: 2 TNERKETFGSLGISPWLVETLQAVAIQEPTPIQKGVIKKVLEGADCIGGAKTGSGKTIAF 61
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPIL + A DP+G A+++TPTRELA Q+ EQF ALG+ ++L+ +VVGGMD++ QA +
Sbjct: 62 ALPILEKWARDPFGTFAVILTPTRELAIQIDEQFAALGAPMNLKHILVVGGMDMVAQAIA 121
Query: 175 LMNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L RPH+V+ATPGR+ L+ + + RT+F+V DEADR+L F ++L + L
Sbjct: 122 LSKRPHIVVATPGRLADLIRSNGEETYASLHRTQFVVFDEADRLLSPTFADDLDDCLEVL 181
Query: 234 --PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQYIFIPKN 286
P+ RQTLLF+ATMT ++ L + + + YE EG E+L+Q Y+ + +
Sbjct: 182 PPPEKRQTLLFTATMTDAIRALKDREPHPGKPPLWLYEVDTEGVSIPESLEQHYLLVASH 241
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
V+D YL+ +LS E+ +S I+F + + LL +L LD LHS +Q +R+++
Sbjct: 242 VRDAYLVQLLSSPENED-KSVIVFANRTYTVELLYRMLRLLDFRVTCLHSEMAQRERVNS 300
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L RF++ A +L+ATDVASRGLDIP+V +V+NYDIPR P DYVHRVGR AR GR G +VS
Sbjct: 301 LGRFRAEAARVLIATDVASRGLDIPSVKMVVNYDIPRDPDDYVHRVGRAARVGRFGESVS 360
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFEC-KEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
FVT++DVDLIH IE VGKQ+ +E E ++L + ++ +A+R +++L+D+ F + K
Sbjct: 361 FVTEHDVDLIHAIEDRVGKQMTAYESFSENKMLEKLKQINEAKRKVSLELVDEDFGSRRK 420
Query: 466 ERKKQKLKMLAEKGSLKKRSEK 487
+ K++++ M ++ + +K S +
Sbjct: 421 KLKEKRMMMASKVQTTRKHSAR 442
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 281/439 (64%), Gaps = 9/439 (2%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
TT + +F LG+ E + C +LG ++PT +Q IP L+G+DV+GLA+TGSGKT A
Sbjct: 73 TTGEIHTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGA 132
Query: 114 FALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
FA+P+L L + LV+TPTRELA+Q+AEQF ALGS + ++ V+VGG+D+++QA
Sbjct: 133 FAVPVLQSLLACAQRLHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQAL 192
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L +PHVVIATPGR+ +E K+LV+DEADR+L++ FE E+ + + +
Sbjct: 193 VLAKKPHVVIATPGRLIDHMENTKGFN--LRALKYLVMDEADRILNMDFESEVDKILKVI 250
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P++R+T LFSATMT +Q L + + TV+ L+Q YIFIP KD YL+
Sbjct: 251 PRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLV 310
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
+L+++ S ++F TC + ++LLL L A+ LH SQ++RL AL++FKS
Sbjct: 311 SILNELAG---NSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSK 367
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
++LLATDVASRGLDIP VD V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV
Sbjct: 368 SRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDV 427
Query: 414 DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
+L IEA++GK+L F +E+EV+ + RV +A+R A +++ E K ++ +
Sbjct: 428 ELFQRIEALIGKKLPAFPTQEEEVMMLVERVSEAQRFARIEMK----ESSEKRKRPSAAQ 483
Query: 474 MLAEKGSLKKRSEKRKKSG 492
+ E G K+ K G
Sbjct: 484 EVDEDGEQSSGVRKKVKGG 502
>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/402 (47%), Positives = 270/402 (67%), Gaps = 15/402 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ + V+ C LG + PT +Q +P LEGKD++GLAQTGSGKT AFALPIL
Sbjct: 27 SFKDLGICDQLVEACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTGAFALPILQ 86
Query: 121 RLAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
L E P+ A V++PTRELA Q+AEQF+ALGSG+ LRC V+VGG+D++ Q
Sbjct: 87 ALLESSQKSVQPF--FACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQTLI 144
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCL 233
L RPH+V+ATPGR LL+ + RT K+LVLDEADR+L+ FE+ L + +
Sbjct: 145 LAKRPHIVVATPGR---LLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNVI 201
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P++R+T LFSATMT ++ L EA + TV+TLKQQY F+P KD YL+
Sbjct: 202 PRDRKTYLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVPSKHKDCYLV 261
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
++L++M + +A++F TC + L+L+L L A+ ++ SQ +RL AL++FK+
Sbjct: 262 YILTEMSN---STAMVFTRTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNKFKAR 318
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ +L+ TDVASRGLDIP+VD+V+NYD+P +DY+HRVGRTARAGR G+A+S V Q ++
Sbjct: 319 ECNVLICTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYEL 378
Query: 414 DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+ +IE ++GK+L EF +E+EVL + RV A+R++ KL
Sbjct: 379 EWYLQIENLIGKKLPEFPAQEEEVLMLLDRVIDAKRISHTKL 420
>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 1 [Ciona intestinalis]
Length = 449
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/418 (45%), Positives = 275/418 (65%), Gaps = 5/418 (1%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
++ D +T++ VTF LG+ + +TC +LG ++P+ +Q IP L+G DV+GLA+T
Sbjct: 7 SSDDVTKASTEAVVTFQSLGVVDVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAET 66
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKT AF +P+L L E+P + ALV+TPTRELA+Q+ EQFKALGS + ++ VVVGG+
Sbjct: 67 GSGKTGAFCIPVLQALLENPQRLFALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGV 126
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D++ Q L +PHVV+ATPGR+ LE+ KFLVLDEADR+L++ FE EL
Sbjct: 127 DMMGQQIILAKKPHVVVATPGRLVDHLEKTKGF--TLRSIKFLVLDEADRILNMDFESEL 184
Query: 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + +P+ R+T LFSATMT ++ L + K + TV+ L Q Y+F+P
Sbjct: 185 DTILKVIPRERRTFLFSATMTGKVKKLQRAALTKPVKCAVNNKYHTVDKLFQYYLFLPSK 244
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KD YL V++++ + IIF TC + +L+L L AV LH SQ++RL A
Sbjct: 245 DKDCYLAAVVNELAG---NAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGA 301
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++FKS +IL+ATDVASRGLDIP VD+V+N D+P +DY+HRVGRTARAGR G +V+
Sbjct: 302 LNKFKSATKSILVATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVT 361
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
FVTQ DV+L IE ++GK+L E+E + EV RV +A+R+A +++ + G +++
Sbjct: 362 FVTQYDVELYQRIEELIGKKLPEYEMEHNEVKVLQERVAEAQRLARLEMKERGSKKRG 419
>gi|308800454|ref|XP_003075008.1| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
[Ostreococcus tauri]
gi|119358858|emb|CAL52279.2| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
[Ostreococcus tauri]
Length = 419
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/411 (45%), Positives = 267/411 (64%), Gaps = 1/411 (0%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL ++ K + R P+ VQ+ CIP+IL GKDV+G+A TGSGKTAAFALPI+
Sbjct: 3 TFDELGLCNVVLKILKRVHFRSPSDVQSTCIPQILAGKDVIGIANTGSGKTAAFALPIVD 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ DPYG+ AL ++PTRELA Q+A+QF G+G L C V+ GG DL+ QA +L RP+
Sbjct: 63 MLSRDPYGIFALCLSPTRELANQIADQFTVFGAGTGLNCMVITGGEDLIQQATALSRRPN 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ATPGR+ + FS+ K L+LDEADR+LD F EL+ + LP+ RQTL
Sbjct: 123 IVVATPGRLFEHFMHSSNTVQYFSKLKCLILDEADRLLDSSFAAELKYLMSNLPQQRQTL 182
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
+FSAT+T + L + + ++YE KT Q Y F+P+ +KDV L+ ++ ++
Sbjct: 183 MFSATITKSVTALQSMLGDAVFYYEDKSVKKTAVRCSQSYCFMPERIKDVNLVKLVRELA 242
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ + IIF +T + C LLS +L L + +LH+ K Q +RL++L FK+G IL+A
Sbjct: 243 LVEAKRTIIFTATIQKCELLSQMLTTLGIPSSSLHAAKKQKERLNSLGVFKNGTVQILVA 302
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLD+P+VD++LNYD+P R Y+HR+GRTAR G AV+FVTQ D+ + IE
Sbjct: 303 TDVAARGLDLPSVDMILNYDVPTDVRQYIHRIGRTARFEASGKAVTFVTQFDILKLKHIE 362
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD-DGFEEKAKERKKQ 470
+G+QL+ +E + + V+ ARRVA M++ GF+EK + +KK+
Sbjct: 363 KTIGQQLDSYELEGSSGAELVGEVFAARRVAKMRMASPGGFDEKLRAKKKR 413
>gi|409045997|gb|EKM55477.1| hypothetical protein PHACADRAFT_184272 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/473 (43%), Positives = 285/473 (60%), Gaps = 32/473 (6%)
Query: 44 EKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGL 103
E+ + P+S +F LGL + ++ ++L PT +QT +P LEG+D++G+
Sbjct: 5 EEASTSRPSSPAPQEKPSFKALGLIDPLLEALQQLSFTSPTDIQTAALPHALEGRDIIGV 64
Query: 104 AQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVV 163
A TGSGKTAAFALPIL +L +DP G+ A VI PTRELAYQ+ E F+ALGS + +RC VV
Sbjct: 65 ASTGSGKTAAFALPILQKLWDDPRGLFACVIAPTRELAYQITEHFEALGSAMGVRCATVV 124
Query: 164 GGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223
GG+D ++QA +L +PHVV+ATPGR++ LE KFLVLDEADR+LD+ F
Sbjct: 125 GGIDEMSQAVALAKKPHVVVATPGRLQYHLENTKGFS--LRSLKFLVLDEADRLLDMDFG 182
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGF------------- 270
L + + +P+ R T LFSATMT+ + L S + E E +
Sbjct: 183 PILDKILKVIPQERTTYLFSATMTTKVAKLQRASLSNPVRVEVSEKYAPLLLIRLLMRLR 242
Query: 271 -----KTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE 325
TV TL Q Y+FIP KDV LM++ + + I IIF T C L++++
Sbjct: 243 VSRRYSTVSTLLQYYLFIPLVQKDVNLMYLANSLASNSI---IIFTRTVHDCQRLAIMMR 299
Query: 326 ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP 385
L AV LH SQS RL AL +FKSG +L+ATDVASRGLDIP VD V+NYDIP +
Sbjct: 300 TLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPHVDAVINYDIPTHS 359
Query: 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVY 445
+DY+HRVGRTARAGR G +++FVTQ DV+L+ IE+V GK+LE + ++E+ RV
Sbjct: 360 KDYIHRVGRTARAGRSGKSITFVTQYDVELVQRIESVTGKKLELWPTDKEEIALLRERVD 419
Query: 446 KARRVATMKLMDDGFEEKAKERK---------KQKLKMLAEKGSLKKRSEKRK 489
+A R AT +L D E + ++R+ + + + E G K+S+KRK
Sbjct: 420 EAGRAATNELKDQAKEGRGRKRRWDVGSGRDDRDRDDDVVEAGMPSKKSKKRK 472
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/404 (45%), Positives = 274/404 (67%), Gaps = 5/404 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LG+++ + C+++ + PT +Q IP +EG+D++GLAQTGSGKTAAFA+PI+ R
Sbjct: 25 FSDLGVSKELCEACEKMNFKHPTEIQKESIPWAIEGRDIIGLAQTGSGKTAAFAIPIIQR 84
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L ++P A V+ PTRELAYQ+AE F++LGS + +RC V+VGGMD++TQ+ +L RPH+
Sbjct: 85 LWQNPQAFFACVLAPTRELAYQIAETFESLGSVIGVRCAVIVGGMDMMTQSIALAKRPHI 144
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR++ LE K+LV+DEADR+LD+ F ++ + + +P+ R T L
Sbjct: 145 IVCTPGRLQDHLENTKGFN--LKHLKYLVMDEADRLLDLDFGPKIDQILKVIPRERNTFL 202
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATMT+ + L S +K E + TV+TL Q Y+F P KD Y++++L+++
Sbjct: 203 FSATMTTKVAKLQRASLHKPVKVEVATKYSTVKTLLQYYLFFPLKHKDCYMVYLLNELAG 262
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
S IIF TC ++++L L A+ LH Q++RL AL++FK+G IL+AT
Sbjct: 263 ---NSTIIFTRTCSDTQKIAIMLRNLGFGAIPLHGQLPQAKRLGALNKFKAGARNILVAT 319
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLDIP VD+V+NYD+P+ +DY+HRVGRTARAGR G +V+FVTQ DV+LI IE
Sbjct: 320 DVASRGLDIPLVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSVTFVTQYDVELIQRIEK 379
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
+ ++L+ F ++ EV+ RV +A+R+AT++L + +K+K
Sbjct: 380 DLERKLDAFPVEKDEVMMLQERVDEAQRIATLELRETANGKKSK 423
>gi|341877652|gb|EGT33587.1| hypothetical protein CAEBREN_24452 [Caenorhabditis brenneri]
Length = 491
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/411 (45%), Positives = 273/411 (66%), Gaps = 7/411 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+++ C LG +P+ +Q +P L+GKDV+GLA+TGSGKT AFA+P+L
Sbjct: 45 TFAELGVSQPLCDACHRLGWVKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P LV+TPTRELA+Q+ +QF+ALGSG+ L V+VGG+D+ QA +L RPH
Sbjct: 105 SLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPH 164
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE KFL++DEADR+L++ FE EL + + +P+ R+T
Sbjct: 165 IIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTY 222
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L S +KTV+ LKQ YIF+P K+ YL+++L+ E
Sbjct: 223 LFSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFVPNKYKETYLVYLLN--E 280
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
G SAI+F +TC + ++++L +L +AV LH SQ +RL +L++FKS IL+
Sbjct: 281 HAG-NSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVC 339
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP VD+V+NYD+P +DYVHRVGRTARAGR GLA++ VTQ DV+ +IE
Sbjct: 340 TDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKIE 399
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
A +GK+L+E++C E EV+ + R +A A +++ + +EK K KK++
Sbjct: 400 ANLGKKLDEYKCVENEVMVLVERTQEAMENAKIEMKE--MDEKRKSGKKRR 448
>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567, partial [Trichoplax
adhaerens]
Length = 424
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/432 (45%), Positives = 279/432 (64%), Gaps = 19/432 (4%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
GL E Q C L ++PT +Q IP L GKD++GLA+TGSGKTAAF LPIL L +
Sbjct: 1 GLMEPLCQACDRLQWKQPTKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDK 60
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + AL++TPTRELA+Q++EQ +ALGS + ++C V++GG+D++TQ+ L +PH++I T
Sbjct: 61 PQRLFALILTPTRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGT 120
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ L K+LV+DEADR+L++ FE E+ + LPK R+T LFSAT
Sbjct: 121 PGRLADHLANTKGFS--LRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSAT 178
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT ++ L S E + TVE L+Q YIF+P KD YL+ +L+++
Sbjct: 179 MTKKVKKLQRASVQDPVKIEVSTKYTTVEKLQQTYIFVPAKYKDCYLVSILNELAG---N 235
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S ++F +TC + + L+L L A+ LH SQS+RL ALH+FKS +++IL+ATDVAS
Sbjct: 236 SFMVFCATCINTQRIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVAS 295
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+N+D P + +DY+HRVGRTARAGR G ++ FVTQ DV+L IE ++ K
Sbjct: 296 RGLDIPHVDIVINFDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIAK 355
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKL----------MDDGFEEKAKERKKQKLKML 475
+L E+ E+EV+ + RV +A+R A M+L +DD E A + +K+K+
Sbjct: 356 KLPEYPTVEEEVMLLMERVAEAQRYAKMELQETMNKKRRPLDDEEEGAATYQLAKKVKL- 414
Query: 476 AEKGS-LKKRSE 486
KG+ KKRS+
Sbjct: 415 --KGARFKKRSK 424
>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 191/437 (43%), Positives = 290/437 (66%), Gaps = 12/437 (2%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T + + LG+ + QTC +L +PTP+Q IP +EGKDV+GLA+TGSGKTAAF
Sbjct: 19 TLEGLEAWQSLGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEGKDVIGLAETGSGKTAAF 78
Query: 115 ALPILHRLAEDPYG--VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
A+P+L L + P G + LV+TPTRELA+Q+ EQF+ALGS + L C +VGG+++++Q
Sbjct: 79 AIPVLQTLLKTPGGGRLSCLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQ 138
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
+L +PHV++ATPGR+ LE+ KFL++DEADR+L++ FE E+ + +
Sbjct: 139 LALAKKPHVIVATPGRLVDHLEKTRGFN--LKALKFLIMDEADRILNLDFEAEVDKILRA 196
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
+P+ RQT+LFSATMT+ ++ L + +KTV+ Q+Y+FIP+ K+ YL
Sbjct: 197 IPRERQTMLFSATMTAKVKKLQRAALKNPVKISINSKYKTVDKNIQKYMFIPEAHKECYL 256
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+ +L++++ S +IF STC L++ L++ L ++V LH SQ +RL AL RFK
Sbjct: 257 VSLLNELQG---SSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARFKG 313
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
+IL+ TDVASRGLD+P VD V+NYD+P +DY+HRVGRTARAGR G +V+FV+Q D
Sbjct: 314 KSRSILVCTDVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYD 373
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
V+L +IEA +GK+L+++ C++ EV++ RV +A+R+A ++ +E+ +RK +K
Sbjct: 374 VELYQKIEAHIGKKLDQWPCEKDEVMALKERVDEAKRIAVQEI-----KEEEGKRKSKKK 428
Query: 473 KMLAEKGSLKKRSEKRK 489
+ E+ S+K R K K
Sbjct: 429 RQFDEEQSIKDRIGKVK 445
>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Meleagris gallopavo]
Length = 447
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/403 (46%), Positives = 272/403 (67%), Gaps = 7/403 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + + C +LG + PT +Q IP L+G+D++GLA+TGSGKT AFALPIL L +
Sbjct: 25 GVTDVLCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDA 84
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALV+TPTRELA+Q++EQF+ALGS + + V+VGG+D ++Q+ +L +PH++IAT
Sbjct: 85 PQRLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIAT 144
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE KFLV+DEADR+L++ FE E+ + + +P++R+T LFSAT
Sbjct: 145 PGRLVDHLENTKGFN--LRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 202
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT +Q L + ++TVE L+Q YIFIP KD YL+++L+++
Sbjct: 203 MTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAG---N 259
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S ++F STC + +LLL L A+ LH SQ++RL +L++FK+ +ILLATDVAS
Sbjct: 260 SFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVAS 319
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L IE ++GK
Sbjct: 320 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGK 379
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+L F +E+EV+ RV +A+R A M+L + G EK + R
Sbjct: 380 KLPAFPMQEEEVMMLQERVAEAQRFARMELREQG--EKKRSRN 420
>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
Length = 474
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 200/442 (45%), Positives = 281/442 (63%), Gaps = 15/442 (3%)
Query: 19 SKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCK 76
S T SKP P + ++LE+ + + T D+ V TF LG+ + C
Sbjct: 13 SHTSSKPAPD-------DASSGSELEQEALEEGSDETADTKVPKTFKDLGIIDSLCDACT 65
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P LV+ P
Sbjct: 66 SLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPYFGLVLAP 125
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA Q++E F+ALGS + +RC V+VGGMD+++Q+ SL +PH+++ATPGR+ LE
Sbjct: 126 TRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLENT 185
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
K+LV+DEADR+LD+ F L + + LP+ R+T LFSAT++S +++L
Sbjct: 186 KGFS--LRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRA 243
Query: 257 S-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
S +N + ++TV TL Q YIFIP KD+YL+H+L++ ++ IIF T
Sbjct: 244 SLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG---QTTIIFTRTVN 300
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
LS+LL L A+ LH SQS RL AL +F+SG IL+ATDVA+RGLDIP VDL
Sbjct: 301 ETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDL 360
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435
VLN+D+P + Y+HRVGRTARAG+ G A+S VTQ +V++ IEA +GKQL E + +++
Sbjct: 361 VLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKE 420
Query: 436 EVLSDITRVYKARRVATMKLMD 457
EV+ RV A+R+A ++ D
Sbjct: 421 EVMVLSDRVGDAQRLAVTEMKD 442
>gi|403164869|ref|XP_003324940.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165434|gb|EFP80521.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 518
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 198/450 (44%), Positives = 288/450 (64%), Gaps = 9/450 (2%)
Query: 24 KPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRP 83
KPE + E EP +++A T + +K D + + TF LGL + C+ L +RP
Sbjct: 37 KPEEKSENEP-TQSALTIRDKKDHQEDQAEQAEEVSKTFEELGLIPELCEACRTLNYKRP 95
Query: 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143
TP+Q IP LE +D++GLAQTGSGKTAAFALP+L L DP V+ PTRELAYQ
Sbjct: 96 TPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPVLQSLWNDPKPFFCCVLAPTRELAYQ 155
Query: 144 LAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVF 203
+++QF ALGS + ++ V+VGG+D+++QA +L RPH+++ATPGR+ LE
Sbjct: 156 ISQQFDALGSTIGVKTAVIVGGIDMMSQAIALSKRPHIIVATPGRLHDHLENTKGFS--L 213
Query: 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYF 263
K+L++DEADR+LD+ F + + + +P+ R+T LFSATMT+ + L S
Sbjct: 214 RNLKYLIMDEADRLLDMDFGPVIDKILKVIPRERRTYLFSATMTTKVAKLQRASLVSPVK 273
Query: 264 YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLL 323
+ + TV+ L Q Y+F P KD YL+++++++ +S IIF T + LS++
Sbjct: 274 VQMSTKYDTVDGLVQLYMFFPFKNKDAYLVYLVNELSG---KSMIIFTRTVYDANRLSII 330
Query: 324 LEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR 383
L L ++ LH SQS RLS+L++FKSG +IL+ATDVASRGLDIPTVD V+N+D+P
Sbjct: 331 LRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSILVATDVASRGLDIPTVDCVINFDLPT 390
Query: 384 YPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR 443
+DY+HRVGRTARAGR G AV+ VTQ DV+L+ IE V+GK++EEF +++V R
Sbjct: 391 NSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQRIEGVIGKKMEEFPHDKEQVFLLSER 450
Query: 444 VYKARRVATMKLMD---DGFEEKAKERKKQ 470
V +A R AT ++ D +G ++ K R+K+
Sbjct: 451 VGEASREATREIRDNERNGGKKSGKFRRKR 480
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 198/434 (45%), Positives = 284/434 (65%), Gaps = 9/434 (2%)
Query: 23 SKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRR 82
SKP P E PE +T E N D S FA LG+ E V+ + LG +
Sbjct: 27 SKPAPTKEQSPEPAPPASTTDEAAANQDDAPVAKKS---FADLGVVESLVEATEALGYKH 83
Query: 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142
PTP+Q IP L G+DV+GLA+TGSGKTAAFALP+L L E P G+ A+V+ PTRELA
Sbjct: 84 PTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQALLEKPSGLFAVVMAPTRELAA 143
Query: 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPV 202
Q+A+ F+ALGS ++LRC V+VGG+D++ QA +L +PHVV+ATPGR+ LE+
Sbjct: 144 QIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFS-- 201
Query: 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-ANKA 261
K+LVLDEADR+LD+ F + + + +P+ R T LFSATM+S +++L S + A
Sbjct: 202 LRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLFSATMSSKVESLQRASLKDPA 261
Query: 262 YFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLS 321
G++ V TL Q ++FIP +KDVY +H+++ +G ++ I+F+ T L+
Sbjct: 262 RVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINSF--IG-QTTIVFLRTVHDTQRLA 318
Query: 322 LLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI 381
+LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP VD+V+NYD+
Sbjct: 319 ILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDVVINYDL 378
Query: 382 PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDI 441
P+ + Y+HRVGRTARAG+ G A+S VTQ D+++ IEA +GK+L+EF +++EV+
Sbjct: 379 PQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEASMGKKLDEFPTEKEEVMVFQ 438
Query: 442 TRVYKARRVATMKL 455
RV +A+R A +++
Sbjct: 439 ARVEEAQRHARIEM 452
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 193/403 (47%), Positives = 263/403 (65%), Gaps = 13/403 (3%)
Query: 44 EKFTNPD------PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG 97
EK T+PD P D TF LG+ + + C +G +PT +Q IP L+G
Sbjct: 12 EKNTHPDVDLDSDPAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQG 71
Query: 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157
+DV+GLA+TGSGKT AFALP+L L P + A+V+ PTRELA+Q+ E F+ALG+ + L
Sbjct: 72 RDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGL 131
Query: 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217
+ VVGG+D++TQA +L +PHVV+ATPGR+ LE +FLVLDEADR+
Sbjct: 132 KSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFH--IREARFLVLDEADRM 189
Query: 218 LDVGFEEELRVVFQCLP--KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVET 275
L + FEEE+ + +P K+R+TLLFSATMTS + L S EA + F T T
Sbjct: 190 LSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRT 249
Query: 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALH 335
L QQY+FIP KD YL + L++ I ++FV+TC + L+LLL L A+ LH
Sbjct: 250 LVQQYLFIPAKYKDCYLAYALNEAAGQTI---LVFVATCNNAQRLALLLRNLGFGAICLH 306
Query: 336 SFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRT 395
+Q +RL ALH+FKSGQ +IL+ATDVASRGLDIP VDLV+N+DIP + +DY+HRVGRT
Sbjct: 307 GQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRT 366
Query: 396 ARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
ARAGR G +++ VTQ DV++ +EA++G +L E++ E+ VL
Sbjct: 367 ARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVL 409
>gi|356520446|ref|XP_003528873.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
10-like [Glycine max]
Length = 438
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 191/407 (46%), Positives = 272/407 (66%), Gaps = 7/407 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG +E V+ C++LG + P + T IP LEGKDV GLAQTG GKT AFALPILH
Sbjct: 10 TFRDLGFSESLVEACEKLGWKSPLKIXTEAIPIALEGKDVTGLAQTGYGKTGAFALPILH 69
Query: 121 RLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L E P V++PTRELA Q+AEQF+ALGS + ++C V+VGG+D++ Q+ + +
Sbjct: 70 ALLEAPRPKHFFDCVLSPTRELAIQIAEQFEALGSXIGVKCAVLVGGIDMVQQSIKIAKQ 129
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ TP R+ L+ R K+LVLDEADR+L+ FEE L + Q +P+ R+
Sbjct: 130 PHIIVGTPRRVLDHLKHTKGFS--LGRLKYLVLDEADRLLNEDFEESLNEILQMIPRERK 187
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT +Q L + EA + TV+TLKQQY+F+P KD Y +++L++
Sbjct: 188 TFLFSATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQYLFLPAKHKDCYFVYILTE 247
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
M ++++F TC + LL+L+L L +A+ ++ SQS+RL A ++FKSG+ IL
Sbjct: 248 MSG---STSMVFTCTCDATRLLALILRNLGLKAIPINGHMSQSKRLGASNKFKSGECNIL 304
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
L TDVASRGLDIPTVD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q ++ +
Sbjct: 305 LCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRFGVAISLVNQYELGWYIQ 364
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
IE ++G +L E+ +E+EVL RV +A+R+A MK+ + G ++K +
Sbjct: 365 IEKLIGNKLPEYPAQEEEVLLLEERVSEAKRLAVMKMKETGGKKKRR 411
>gi|357505249|ref|XP_003622913.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
gi|355497928|gb|AES79131.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
Length = 1155
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/408 (46%), Positives = 273/408 (66%), Gaps = 7/408 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL E V+ C+++G + P +Q IP LEGKD++GLA+TGSGKT AFALPILH
Sbjct: 727 SFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILH 786
Query: 121 RLAEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L E P A V++PTRELA Q++EQF+ALGS + ++C V+VGG+D++ Q+ +
Sbjct: 787 ALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKL 846
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ TPGR+ L+ +R K+LVLDEADR+L+ FEE L + +P+ R+
Sbjct: 847 PHIIVGTPGRVLDHLKNTKGFS--LARLKYLVLDEADRLLNEDFEESLNEILGMIPRERR 904
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ ++ L + E + TV+TLKQQY F+P KD YL+++LS+
Sbjct: 905 TFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILSE 964
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
M ++++F TC S LL+L+L L +A+ ++ SQ +RL AL++FKSG IL
Sbjct: 965 MAG---STSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 1021
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
L TDVASRGLDIP VD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q +++ +
Sbjct: 1022 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQ 1081
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
IE ++GK+L E+ E+EVL RV +A+R+A K+ + G +++ E
Sbjct: 1082 IEKLIGKKLPEYPANEEEVLLLEERVGEAKRLAATKMKESGGKKRRGE 1129
>gi|336373626|gb|EGO01964.1| hypothetical protein SERLA73DRAFT_49383 [Serpula lacrymans var.
lacrymans S7.3]
Length = 474
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 194/448 (43%), Positives = 277/448 (61%), Gaps = 15/448 (3%)
Query: 38 AKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG 97
++ T + N PN+ T + +F L ++ + + +R PT +Q CIP +L G
Sbjct: 19 SRATAGSRAPNTKPNTPTLHQSFSFDDLNISSPLLAALSRMSIRTPTEIQVACIPPLLSG 78
Query: 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157
+D +G A+TGSGKT AFALPIL +L+EDPYG+ ALV+TPTRELA+Q+++QF LG+GL +
Sbjct: 79 RDCIGNAKTGSGKTIAFALPILQKLSEDPYGIFALVLTPTRELAFQISDQFAVLGAGLSI 138
Query: 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217
R V+VGGMD++TQA L NRPHVV+ATPGRI L SR KFLVLDEADR+
Sbjct: 139 RTAVIVGGMDMMTQALELDNRPHVVVATPGRIVDHLRSSSG-EWSLSRIKFLVLDEADRL 197
Query: 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL----SANKAYFYEAYEGFKTV 273
L F EL +F LPK RQT LF+AT+T + L E+ K + + +TV
Sbjct: 198 LTPTFSPELSYLFDVLPKERQTCLFTATLTPSIDKLAEVPPRPGKQKPFIHRMNANIETV 257
Query: 274 ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR--------SAIIFVSTCRSCHLLSLLLE 325
TL Q ++ +P +V++ YL H+L ++ IIF + R+ L+ LL+
Sbjct: 258 VTLNQNFVLVPSHVRETYLYHLLCNPPELAASLRQLVQPPPTIIFCTKPRTAAYLTSLLK 317
Query: 326 ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP 385
L + ALHS +Q +RL++L F+S +L++TDV +RGLDI V +V+N+D+P P
Sbjct: 318 TLSIRSTALHSRLTQRERLTSLSLFRSSVIPVLVSTDVGARGLDIEDVAMVINWDLPNEP 377
Query: 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVY 445
+Y HRVGRTARAG+ G+A+SFVT+ D + + +IE+ +G +L E E +VL +T V
Sbjct: 378 EEYTHRVGRTARAGKAGIAISFVTEKDEERVLKIESRIGTKLAEMILPEGKVLEKLTSVS 437
Query: 446 KARRVATMKLMDDGF--EEKAKERKKQK 471
A+R+A M+L D F E+ KKQK
Sbjct: 438 TAKRLANMELHDSDFGKREEIHNIKKQK 465
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 184/388 (47%), Positives = 265/388 (68%), Gaps = 5/388 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E
Sbjct: 1 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET 60
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L +PH++IAT
Sbjct: 61 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIAT 120
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+T LFSAT
Sbjct: 121 PGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 178
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT +Q L + ++TVE L+Q Y+FIP KD YL+++L+++
Sbjct: 179 MTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAG---N 235
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +ILLATDVAS
Sbjct: 236 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 295
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE ++GK
Sbjct: 296 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGK 355
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATM 453
+L F +E EV+ RV +A+R A M
Sbjct: 356 KLPVFPTQEDEVMMLTERVTEAQRFARM 383
>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 193/439 (43%), Positives = 279/439 (63%), Gaps = 20/439 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E V+ C+ LG + P+ +Q +P LEGKDV+GLAQTGSGKT AFA+PIL
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 121 RLAEDPY------------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
L E Y A V++PTRELA Q+AEQF+ALG+ + LRC V+VGG+D
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ Q +L RPHV++ATPGR+ + + K+LVLDEADR+L+ FE+ L
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFS--LKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P+ R+T LFSATMT ++ L EA + TV+TLKQQY F+ K
Sbjct: 188 ILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++LS+M + +++IF TC L+L+L L A+ + +QS+RL AL+
Sbjct: 248 DCYLVYILSEMPE---STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 304
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+G+ IL+ TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+ +S V
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 364
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
Q +++ +IE ++GK+L E+ +E EVLS + RV +A++++ M + + G ++ E
Sbjct: 365 NQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDD 424
Query: 469 KQKLKMLAEKGSLKKRSEK 487
++ + L G K R K
Sbjct: 425 EESERFL---GGNKDRGNK 440
>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
Length = 440
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 190/405 (46%), Positives = 271/405 (66%), Gaps = 7/405 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL E V+ C LG + P +Q IP L+GKDV+GLAQTGSGKT AFALPILH
Sbjct: 10 SFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPILH 69
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A P A V++PTRELA Q++EQF+ALGSG+ ++ V+VGG+D++ Q+ +
Sbjct: 70 ALLQAPRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSIKIAKH 129
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ TPGR+ L+ S+ K+LVLDEADR+L+ FEE L + +P+ R+
Sbjct: 130 PHIIVGTPGRVLDHLKNTKGFS--LSKLKYLVLDEADRLLNEDFEESLNEILGMIPRERR 187
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT ++ L + EA + TV+TLKQQY F+P KD YL+++L++
Sbjct: 188 TFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAKRKDCYLVYILTE 247
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
M ++++F TC + LL+L+L L +A+ ++ SQ +RL AL++FKSG IL
Sbjct: 248 MAG---STSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 304
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
L TDVASRGLDIP VD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q +++ +
Sbjct: 305 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQ 364
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++GK+L E+ +E+EVL RV +A+R+A K+ + G ++K
Sbjct: 365 IEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAATKMKESGGKKK 409
>gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 533
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/404 (45%), Positives = 265/404 (65%), Gaps = 5/404 (1%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+ T VTF LG+ E V+ C L +PT +Q + L+ +D++ LA+TGSGKT
Sbjct: 88 DETEEKEDVTFQSLGVCEELVEACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKT 147
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AFALP++ L + P ALV++PTREL Q+AE F+ALG G+ L+ V+VGG+D + Q
Sbjct: 148 LAFALPVIQNLLDAPQPFYALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQ 207
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
A +L +PH++I TPGRI ++ F KFLVLDEAD++L++ FE+++ +
Sbjct: 208 AIALSKKPHIIIGTPGRILYHMQNTKGFN--FKALKFLVLDEADKLLNMDFEKDINQILD 265
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
+PK R T LFSATMT+ + L S E ++ V TL QY FIP KD Y
Sbjct: 266 IIPKKRNTFLFSATMTNKVHKLQRASLKDPVKIEVSSKYQMVSTLVAQYAFIPAKYKDCY 325
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L++ L+ + ++IIFV TC + L+L+L L AV +H SQ +RL A+++FK
Sbjct: 326 LVYSLN---EFAGNTSIIFVQTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFK 382
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG+ IL+ATDVASRGLDIP+VDLV+NYDIP ++YVHRVGRTARAGR G A+SFVTQ
Sbjct: 383 SGEKKILVATDVASRGLDIPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQY 442
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
DV++ +IEA++GK+L++++C+E +VL RV +A+R+A ++
Sbjct: 443 DVEMYLKIEALIGKKLDQYKCEEYQVLVFNERVQEAQRIAAQEI 486
>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
112818]
gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
Length = 474
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 198/440 (45%), Positives = 276/440 (62%), Gaps = 11/440 (2%)
Query: 19 SKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKEL 78
S T SKP P+ + +T + D T + TF LG+ + C L
Sbjct: 13 SHTSSKPAPEDVSSGSERERETPE-----ESDEEPADTKAPKTFKDLGIIDSLCDACTSL 67
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138
G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P LV+ PTR
Sbjct: 68 GYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPYFGLVLAPTR 127
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA Q+ E F+ALGS + +RC V+VGGMD+++Q+ SL +PH+++ATPGR+ LE
Sbjct: 128 ELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLENTKG 187
Query: 199 IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS- 257
K+LV+DEADR+LD+ F L + + LP+ R+T LFSAT++S +++L S
Sbjct: 188 FS--LRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASL 245
Query: 258 ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSC 317
+N + ++TV TL Q YIFIP KD+YL+H+L++ ++ IIF T
Sbjct: 246 SNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG---QTTIIFTRTVNET 302
Query: 318 HLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377
LS+LL L A+ LH SQS RL AL +F+SG IL+ATDVA+RGLDIP VDLVL
Sbjct: 303 QRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLVL 362
Query: 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437
N+D+P + Y+HRVGRTARAG+ G A+S VTQ +V++ IEA +GKQL E + +++EV
Sbjct: 363 NFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKEEV 422
Query: 438 LSDITRVYKARRVATMKLMD 457
+ RV A+R+A ++ D
Sbjct: 423 MVLSDRVGDAQRLAVTEMKD 442
>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
Length = 474
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 198/441 (44%), Positives = 278/441 (63%), Gaps = 7/441 (1%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKE 77
K + S P +P P+ S ++ Q E T + TF LG+ + C
Sbjct: 8 KRRKLSHPSSKPAPDDVSSGSEREQ-EAPEESGEEPADTKAPKTFKDLGIIDSLCDACTS 66
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P LV+ PT
Sbjct: 67 LGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPYFGLVLAPT 126
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDP 197
RELA Q++E F+ALGS + +RC V+VGGMD+++Q+ SL +PH+++ATPGR+ LE
Sbjct: 127 RELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLENTK 186
Query: 198 DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS 257
K+LV+DEADR+LD+ F L + + LP+ R+T LFSAT++S +++L S
Sbjct: 187 GFS--LRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRAS 244
Query: 258 -ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
+N + ++TV TL Q YIFIP KD+YL+H+L++ ++ IIF T
Sbjct: 245 LSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPG---QTTIIFTRTVNE 301
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
LS+LL L A+ LH SQS RL AL +F+SG IL+ATDVA+RGLDIP VDLV
Sbjct: 302 TQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLV 361
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
LN+D+P + Y+HRVGRTARAG+ G A+S VTQ +V++ IEA +GKQL E + +++E
Sbjct: 362 LNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQLPEHKTEKEE 421
Query: 437 VLSDITRVYKARRVATMKLMD 457
V+ RV A+R+A ++ D
Sbjct: 422 VMVLSDRVGDAQRLAVTEMKD 442
>gi|357500169|ref|XP_003620373.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495388|gb|AES76591.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 502
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 187/405 (46%), Positives = 271/405 (66%), Gaps = 7/405 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL E V+ C+++G + P +Q IP LEGKD++GLA+TGSGKT AFALPILH
Sbjct: 74 SFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAETGSGKTGAFALPILH 133
Query: 121 RLAE--DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L E P A V++PTRELA Q++EQF+ALGS + ++C V+VGG+D++ Q+ +
Sbjct: 134 ALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKL 193
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ TPGR+ L+ +R K+LVLDEADR+L+ FEE L + +P+ R+
Sbjct: 194 PHIIVGTPGRVLDHLKNTKGFS--LARLKYLVLDEADRLLNEDFEESLNEILGMIPRERR 251
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT ++ L + E + TV+TLKQQY F+P KD YL+++L+
Sbjct: 252 TFLFSATMTKKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILT- 310
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+M ++++F TC S LL+L+L L +A+ ++ SQ +RL AL++FKSG IL
Sbjct: 311 --EMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 368
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
L TDVASRGLDIP VD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q +++ +
Sbjct: 369 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQ 428
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++GK+L E+ E+EVL RV +A+R+A K+ + G +++
Sbjct: 429 IEKLIGKKLPEYPANEEEVLLLEERVGEAKRLAATKMKESGGKKR 473
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 185/399 (46%), Positives = 268/399 (67%), Gaps = 6/399 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ + + C LG +PT +Q IP LEGKD++GLA+TGSGKTAAFALPIL
Sbjct: 37 TFADLGVVDSLCEACTALGFTKPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPILQ 96
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + LV+ PTRELAYQ+++QF+ALGS + +RC V+VGGMD++ QA +L +PH
Sbjct: 97 ELLDKPQPMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVPQAIALAKKPH 156
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ATPGR+ LE + K+LV+DEADR+LD+ F L +FQ LP+ R+T+
Sbjct: 157 IVVATPGRLLDHLENTKGFS--LRQLKYLVMDEADRLLDLDFGPILDKIFQVLPRERRTM 214
Query: 241 LFSATMTSDLQTLLELSANKAYFYE-AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM++ L L + + + ++TV+ L Q+YIFIP KD+YL+++L++
Sbjct: 215 LFSATMSTKLNNLTRAALQQPVKVSISSSSYQTVKNLMQRYIFIPHKFKDIYLVYLLNEF 274
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ I+F T ++ LL L + A+ LH +QS RL AL++F+ G IL+
Sbjct: 275 AG---QTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGHRDILV 331
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VDLVLN+D+P + YVHRVGRTARAG+ G+A+S VTQ D+++ I
Sbjct: 332 ATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRI 391
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDD 458
E +GK+LEE + EV+ RV +A+R+A ++ ++
Sbjct: 392 EKALGKKLEEHPTERDEVMVFAPRVGEAQRIAVTEMKNE 430
>gi|336373869|gb|EGO02207.1| hypothetical protein SERLA73DRAFT_178026 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386778|gb|EGO27924.1| hypothetical protein SERLADRAFT_462194 [Serpula lacrymans var.
lacrymans S7.9]
Length = 449
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 190/395 (48%), Positives = 266/395 (67%), Gaps = 5/395 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL + +Q +++ + PT +QT IP LEGKD++G+A TGSGKTAAFALPIL
Sbjct: 16 TFKSLGLIDSLLQALEQVNHKVPTDIQTEVIPHALEGKDIIGVASTGSGKTAAFALPILQ 75
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L E+P G+ A V+ PTRELAYQ+++QF++LGS + +RC V+VGG+ + QA +L +PH
Sbjct: 76 KLWEEPKGLFACVLAPTRELAYQISQQFESLGSDMGVRCAVIVGGVPTVPQAVALAKKPH 135
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VV+ATPGR+ L+E + KFLVLDEADR+LD+ F + + + + +PK R T
Sbjct: 136 VVVATPGRLLWHLQETKGFG--LANLKFLVLDEADRLLDMDFGQVIDDILKVIPKQRTTY 193
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMTS + L S E ++TV TL Q Y+FIP KDV L+++++ +
Sbjct: 194 LFSATMTSKVAKLQRASLKNPVRVEVAGKYQTVSTLLQYYLFIPLKDKDVNLVYLVNALA 253
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S IIF T L+++L L AV LH SQSQRL AL +FKSG IL+A
Sbjct: 254 Q---NSIIIFTRTVHDAARLTIVLRTLGFSAVPLHGQLSQSQRLGALAKFKSGGRKILVA 310
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP+VD+V+N+DIP + +DY+HRVGRTARAGR G +++ VTQ DV+L+ IE
Sbjct: 311 TDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELVQRIE 370
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+V+ K++E + +++E+ RV +A R+A +L
Sbjct: 371 SVIEKKMELWPTEKEEIALLTERVNEAGRIAANEL 405
>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
Length = 456
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 279/441 (63%), Gaps = 20/441 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E V+ C+ LG + P+ +Q +P LEGKDV+GLAQTGSGKT AFA+PIL
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 121 RLAEDPY------------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
L E Y A V++PTRELA Q+AEQF+ALG+ + LRC V+ GG+D
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDR 129
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ Q +L RPHV++ATPGR+ + + K+LVLDEADR+L+ FE+ L
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFS--LKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P+ R+T LFSATMT ++ L EA + TV+TLKQQY F+ K
Sbjct: 188 ILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++LS+M + +++IF TC L+L+L L A+ + +QS+RL AL+
Sbjct: 248 DCYLVYILSEMPE---STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 304
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+G+ IL+ TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+ +S V
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 364
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
Q +++ +IE ++GK+L E+ +E EVLS + RV +A++++ M + + G ++ E
Sbjct: 365 NQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDD 424
Query: 469 KQKLKMLAEKGSLKKRSEKRK 489
++ + L G K R K +
Sbjct: 425 EESERFL---GGNKDRGNKER 442
>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
Length = 456
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/441 (43%), Positives = 279/441 (63%), Gaps = 20/441 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E V+ C+ LG + P+ +Q +P LEGKDV+GLAQTGSGKT AFA+PIL
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 121 RLAEDPY------------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
L E Y A V++PTRELA Q+AEQF+ALG+ + LRC V+VGG+D
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ Q +L RPHV++ATPGR+ + + K+LVLDEADR+L+ FE+ L
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFS--LKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P R+T LFSATMT ++ L EA + TV+TLKQQY F+ K
Sbjct: 188 ILEEIPLERETFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++LS+M + +++IF TC L+L+L L A+ + +QS+RL AL+
Sbjct: 248 DCYLVYILSEMPE---STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 304
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+G+ IL+ TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+ +S V
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 364
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
Q +++ +IE ++GK+L E+ +E EVLS + RV +A++++ M + + G ++ E
Sbjct: 365 NQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDD 424
Query: 469 KQKLKMLAEKGSLKKRSEKRK 489
++ + L G K R K +
Sbjct: 425 EESERFL---GGNKDRGNKER 442
>gi|18424420|ref|NP_568931.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
gi|108861883|sp|Q8GY84.2|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
Length = 456
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/441 (43%), Positives = 279/441 (63%), Gaps = 20/441 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E V+ C+ LG + P+ +Q +P LEGKDV+GLAQTGSGKT AFA+PIL
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 121 RLAEDPY------------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
L E Y A V++PTRELA Q+AEQF+ALG+ + LRC V+VGG+D
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ Q +L RPHV++ATPGR+ + + K+LVLDEADR+L+ FE+ L
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFS--LKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P R+T LFSATMT ++ L EA + TV+TLKQQY F+ K
Sbjct: 188 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++LS+M + +++IF TC L+L+L L A+ + +QS+RL AL+
Sbjct: 248 DCYLVYILSEMPE---STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 304
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+G+ IL+ TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+ +S V
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 364
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
Q +++ +IE ++GK+L E+ +E EVLS + RV +A++++ M + + G ++ E
Sbjct: 365 NQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDD 424
Query: 469 KQKLKMLAEKGSLKKRSEKRK 489
++ + L G K R K +
Sbjct: 425 EESERFL---GGNKDRGNKER 442
>gi|390351278|ref|XP_786173.3| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Strongylocentrotus purpuratus]
Length = 428
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 196/427 (45%), Positives = 280/427 (65%), Gaps = 5/427 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + + C +L + P+ +QT +P L+GKDV+GLA+TGSGKT AFALPIL L E
Sbjct: 5 GVVDVLCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLET 64
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + ALV+TPTRELAYQ+AEQF+ALGS + + C V+VGG+D++TQA L +PHV+IAT
Sbjct: 65 PQRLFALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVMIAT 124
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+LV+DEADR+L++ FE E+ + + +PK R+T L+SAT
Sbjct: 125 PGRLVDHLENTKGFN--LRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTYLYSAT 182
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT + L S E ++TV L+Q YIFIP KD YL+ +L++
Sbjct: 183 MTKKVAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIPAKYKDCYLVSILNEFAG---N 239
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S ++F STC + ++LLL L A+ LH SQS+RL L++FKS +IL+ATDVAS
Sbjct: 240 SFMVFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVAS 299
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE ++ K
Sbjct: 300 RGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIDK 359
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRS 485
+L F+ +E+EV+ + RV +A+R A M++ D ++K + + K +E+ + ++
Sbjct: 360 KLPLFKTEEEEVMMLMERVTEAQRYAKMEMRDSDEKKKGGRSRGRDSKEDSEEFTGVRKR 419
Query: 486 EKRKKSG 492
K K+ G
Sbjct: 420 MKVKQQG 426
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 199/452 (44%), Positives = 289/452 (63%), Gaps = 11/452 (2%)
Query: 17 PKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCK 76
PK + P E E ES + Q + +P T + T G+ + + C+
Sbjct: 15 PKPVEPEQSAPSSESEDESATVEAAQADDKEEAEPPKTFKELANTPHHQGIVDALCEACE 74
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
LG + PT +Q IP L+G+DV+GLA+TGSGKTAAFALP+L L + P + LV+ P
Sbjct: 75 TLGYKTPTGIQAQSIPVALQGRDVIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAP 134
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA Q+ + F+ALG+ + LRC V+VGG+D++ QA +L +PHV++ATPGR+ LE+
Sbjct: 135 TRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAVALGKKPHVIVATPGRLVDHLEKT 194
Query: 197 PDIPPVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254
FS RT K+LVLDEADR+LD+ F E + + + +P+ R+T LFSATM+S +++L
Sbjct: 195 KG----FSLRTLKYLVLDEADRLLDMDFGESIEKLLKFIPRERRTYLFSATMSSSVESLQ 250
Query: 255 ELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVST 313
S + + ++TV TLKQ Y+FIP KD YL+H++++ +S I+F T
Sbjct: 251 RASLRDPVRVSVSASKYQTVSTLKQHYVFIPHKRKDTYLIHIINEFAG---KSCIVFTRT 307
Query: 314 CRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTV 373
++LL L A+ LH SQS RL AL++F+ G IL+ATDVA+RGLDIP V
Sbjct: 308 VYETQRCAVLLRTLGFGAIPLHGQLSQSARLGALNKFRGGTREILVATDVAARGLDIPKV 367
Query: 374 DLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK 433
D++LNYDIP + Y+HRVGRTARAG+ G+A+S VTQ D++L IEA +GK+L+EF+ K
Sbjct: 368 DVILNYDIPSDSKTYIHRVGRTARAGKSGVAISIVTQFDIELFTRIEAALGKKLDEFDTK 427
Query: 434 EQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
E+EV++ +RV +A+R A + M++ E + K
Sbjct: 428 EEEVMTFQSRVQEAQRHARNE-MNNIMESRNK 458
>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
Length = 449
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/405 (46%), Positives = 266/405 (65%), Gaps = 5/405 (1%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
++T+ + TF LGL + ++ ++ + PT +Q +P LEG+D++G+A TGSGKTA
Sbjct: 7 ASTSAAAPTFKSLGLIDPLLEALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTA 66
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AFALPIL +L +DP G+ A V+ PTRELAYQ+++QF+ALGS + +RC V+VGG D++ Q
Sbjct: 67 AFALPILQKLWDDPKGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQK 126
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
+L RPH+V+ATPGR+ LE+ KFLVLDEADR+LD+ F + + +
Sbjct: 127 VALAKRPHIVVATPGRLDDHLEKTKGFN--LRGIKFLVLDEADRLLDMDFGPVIDKILKV 184
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
+PK R T LFSATMT+ + L S + E ++TV++L Q Y+ +P KD L
Sbjct: 185 IPKERTTYLFSATMTTKVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYLLMPLKEKDTLL 244
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+++ + + S IIF T LS++L L AV LH SQSQRL AL +FKS
Sbjct: 245 VYLANTLAQ---NSIIIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKS 301
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G +L+ATDVASRGLDIP+VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ D
Sbjct: 302 GGRKVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYD 361
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
V+ I IE V+GK++E + E+EV RV +A RVA ++ D
Sbjct: 362 VEFIMRIEKVIGKKMELWPTDEEEVSLLRERVGEAARVAAAEMRD 406
>gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1]
Length = 504
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/405 (47%), Positives = 268/405 (66%), Gaps = 9/405 (2%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
TFA LGLAE + C L +PT +Q IP L+GKDV+GLA+TGSGKTAAFALP+
Sbjct: 80 NATFADLGLAEVLCEACATLKFTKPTEIQRRSIPLALQGKDVIGLAETGSGKTAAFALPV 139
Query: 119 LHRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
LH L + ALV+ PTRELA+Q+ + F ALGS + L+ V+VGG+D+ TQA +L
Sbjct: 140 LHDLLATKGKKEFFALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALA 199
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PHV+IATPGR+ LE ++L++DEADR+L++ +E+EL + +P+
Sbjct: 200 KKPHVLIATPGRLVDHLENTKGFH--LKALRYLIMDEADRMLNMDYEKELDKILAVIPRE 257
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMTS + L S E +KTV+TL Q+Y+F+P+ KD YL++++
Sbjct: 258 RRTFLFSATMTSKVGKLQRASLRDPVKVEVNSKYKTVDTLIQRYMFVPQKFKDCYLIYLM 317
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S IIF STC + +L+L +L +AV LH SQ +RL AL +F S T
Sbjct: 318 NQLRG---NSFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTSQSHT 374
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVASRGLDIP VD+V+NYDIP + +DY+HRVGRTARAGR G A++ TQ DV+L
Sbjct: 375 ILVATDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYDVELF 434
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVAT--MKLMDDG 459
IEA++GK++EE+ + +VL + RV A+R A MK ++D
Sbjct: 435 QRIEALIGKKMEEYPTESSQVLQLLERVSDAQRNAINEMKELNDN 479
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 198/436 (45%), Positives = 287/436 (65%), Gaps = 13/436 (2%)
Query: 23 SKPEPQPE--PEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGM 80
SKP P+ E PEP + T + + P + + FA LG+ E V+ + LG
Sbjct: 27 SKPAPRKEQSPEPAPPASTTDEAAADQDDAPVAKKS-----FADLGVVESLVEATEALGY 81
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
+ PTP+Q IP LEG+DV+GLA+TGSGKTAAFALP+L L E P G+ A+V+ PTREL
Sbjct: 82 KHPTPIQEKSIPLALEGRDVIGLAETGSGKTAAFALPVLQALLEKPSGLFAVVMAPTREL 141
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP 200
A Q+A+ F+ALGS ++LRC V+VGG+D++ QA +L +PHVV+ATPGR+ LE+
Sbjct: 142 AAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFS 201
Query: 201 PVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-AN 259
K+LVLDEADR+LD+ F + + + +P+ R T LFSATM+S +++L S +
Sbjct: 202 --LRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLFSATMSSKVESLQRASLKD 259
Query: 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319
A G++ V TL Q Y+FIP +KDVY +H+++ +G ++ I+F+ T
Sbjct: 260 PARVSVQSNGYQVVSTLLQNYLFIPHALKDVYCVHLINSF--IG-QTTIVFLRTVHDTQR 316
Query: 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
L++LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP VD+V+NY
Sbjct: 317 LAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDVVINY 376
Query: 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLS 439
D+P+ + Y+HRVGRTARAG+ G A+S VTQ D+++ IEA +GK+L+EF ++ EV+
Sbjct: 377 DLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEASMGKKLDEFPTEKDEVMV 436
Query: 440 DITRVYKARRVATMKL 455
RV +A+R A +++
Sbjct: 437 FQARVEEAQRHARIEM 452
>gi|146161285|ref|XP_977099.2| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|146146797|gb|EAR86377.2| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 440
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/429 (44%), Positives = 276/429 (64%), Gaps = 10/429 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL W +TC ++G + PT +Q IP +L + V+ A+TGSGKTA FA PIL
Sbjct: 4 FAKLGLDSWIQKTCDKVGYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQD 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
LA+DP+GV A+V+T RELA Q++EQF GS L+LR +VGG+D Q L PH+
Sbjct: 64 LAKDPFGVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQLSELERIPHI 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ TPGR ++++ P + K+LVLDEADR+ + E+++ + + +P+ +Q +L
Sbjct: 124 VVGTPGRTLDMIDKSPVLKEYIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQIIL 183
Query: 242 FSATMTSDL--QTLLELSANKAYF--YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+AT+ D + L E+ F + + K V+TLKQ+++ +P+ VKD +++L+
Sbjct: 184 ATATINDDFNDKKLNEILKTNVKFERFCVNQQKKVVQTLKQKFVLVPEMVKDQNFINLLN 243
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
K + GI S IIFV+ CR+CH ++ LL +L+ + +LHS Q QR+S L FKS A I
Sbjct: 244 KFK--GI-SMIIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISHLKTFKSQAANI 300
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTVDLV+NYDIP+ DY+HRVGRTAR G+ GLA+S +TQ DV LI
Sbjct: 301 LVATDVASRGLDIPTVDLVINYDIPKNSDDYIHRVGRTARKGKRGLAISIMTQYDVQLIL 360
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE---KAKERKKQKLKM 474
IE +G++LEE + E+E L +V KA++ +K+ +DG E K ++ KK +
Sbjct: 361 NIEKNIGEKLEELKVDEEEALEIAPKVNKAKKFVKIKMSEDGSSENFDKQEQDKKSYKEF 420
Query: 475 LAEKGSLKK 483
+ E+ LKK
Sbjct: 421 IREQKKLKK 429
>gi|403360910|gb|EJY80150.1| hypothetical protein OXYTRI_22568 [Oxytricha trifallax]
Length = 488
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 197/466 (42%), Positives = 288/466 (61%), Gaps = 38/466 (8%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L W ++ +E+G++ PT +Q +P IL+GK+++G AQTGSGKTA FALP+L
Sbjct: 9 TFKSLNLDNWIIKNLEEIGIKAPTQIQIDSLPHILKGKNIIGCAQTGSGKTACFALPMLQ 68
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKA-LGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+LA DPYGV L++ P+REL Q+ + ++ +G +++R V+VGG+D + Q K L P
Sbjct: 69 KLAADPYGVFGLILAPSRELCMQIKQSIESFVGQNMNIRVCVLVGGVDYMKQIKELQEIP 128
Query: 180 HVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCLPKNR 237
H++IA PGR+ L+ D + +FLV DEADR+L + + +L + + LP R
Sbjct: 129 HIIIACPGRMVHYLDNDHYGLKDYLQNLQFLVFDEADRMLTEDTMKSDLVKILEILPNER 188
Query: 238 QTLLFSATMTSDL-----QTLLELSANKAYFY------EAYEGF-KTVETLKQQYIFIPK 285
QTLLFSATM + + L+ NK A E F KTV+ L Q+ +FIP+
Sbjct: 189 QTLLFSATMVQNYDRNISKNLIFGEDNKREMVGIGNTEAANEEFQKTVQNLDQKIVFIPE 248
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
NVK+ YL+++L + + IIF STC++CH L++LL+EL+ +A +HS +Q +RL+
Sbjct: 249 NVKEAYLIYLLKNQKLKKQQQCIIFTSTCKNCHFLAMLLQELEFDATFIHSQLNQRKRLN 308
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
L RFKS I++ATDVASRGLD+P V V+N+DIP+ P+DYVHRVGRTARAGRGG +V
Sbjct: 309 NLARFKSNYTKIIVATDVASRGLDMPLVQTVINFDIPKNPKDYVHRVGRTARAGRGGNSV 368
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
S VTQ D+DLI E VG ++++ E E+EVL DI + K +V +K+ + G + +
Sbjct: 369 SLVTQYDIDLILACEKYVGIKIDKLELNEKEVLDDINHIMKVMQVVRIKMAEQGINDMFE 428
Query: 466 ERKKQKL-----------------------KMLAEKGSLKKRSEKR 488
E K++K ++LAEK +KR EK+
Sbjct: 429 EFKEKKSLIRDQRKGPSGAQQFGLSTVKSKEILAEKSKSRKRDEKQ 474
>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
Length = 506
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 272/426 (63%), Gaps = 19/426 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+++ C+ LG +P+ +Q +P L+GKDV+GLA+TGSGKT AFA+P+L
Sbjct: 55 TFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 114
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P LV+TPTRELA+Q+ +QF+ALGSG+ L V+VGG+D+ QA +L RPH
Sbjct: 115 SLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 174
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE KFL++DEADR+L++ FE EL + + +PK R+T
Sbjct: 175 IIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTY 232
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L S +KTV+ LKQ YIFIP K+ YL+++L+ E
Sbjct: 233 LFSATMTKKVSKLERASLRDPARVSVSTRYKTVDNLKQHYIFIPNKYKETYLVYLLN--E 290
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ------------SQRLSALH 348
G SAI+F +TC + ++++L +L +AV LH SQ +RL +L+
Sbjct: 291 HAG-NSAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGSLN 349
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FKS IL+ TDVA+RGLDIP VD+V+NYD+P +DYVHRVGRTARAGR GLA++ V
Sbjct: 350 KFKSKARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVV 409
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVAT--MKLMDDGFEEKAKE 466
TQ DV+ +IEA +GK+L+E++C E EV+ + R +A A MK MD+ + K
Sbjct: 410 TQYDVEGYQKIEANLGKKLDEYKCVENEVMVLVERTQEALENAKVEMKEMDEKRKSGKKR 469
Query: 467 RKKQKL 472
R+ L
Sbjct: 470 RQNDDL 475
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 21/455 (4%)
Query: 25 PEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVT--------FAGLGLAEWAVQTCK 76
PE + E S + Q + DP T ++T T F LG+ + + C+
Sbjct: 14 PEHGSDTESTSSHKSVAQQD-----DPLETQDEATATESRPAPKSFKDLGIIDQLCEACE 68
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
+G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E+P L++ P
Sbjct: 69 TMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAP 128
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA+Q+++ F++LGS +++RC V+VGGMD+++Q+ +L +PH+++ATPGR+ LE
Sbjct: 129 TRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENT 188
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L
Sbjct: 189 KGFS--LRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRA 246
Query: 257 S-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
S +N + ++TV TL Q Y+F+P KD+YL+++L+ E +G +S IIF T
Sbjct: 247 SLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLN--EFVG-QSTIIFTRTVH 303
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
+S LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD+
Sbjct: 304 ETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDV 363
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435
VLN+D+P + YVHRVGRTARAG+ G+A+SFVTQ DV++ IE +GK+L+E+E ++
Sbjct: 364 VLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKD 423
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
EV+ RV +A+R A M++ + F+EK + K+
Sbjct: 424 EVMVLAERVGEAQRQAIMEMKN--FDEKRGTKAKK 456
>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
gi|74660195|sp|Q6CH58.1|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica CLIB122]
Length = 480
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 204/454 (44%), Positives = 291/454 (64%), Gaps = 20/454 (4%)
Query: 21 TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGM 80
T+S E + EP+ SKN + ++++ + + T TF LG+ + +TC+EL
Sbjct: 35 TKSDNEEE-EPKKSSKNYTSVEVDE---------SEEQTKTFKDLGVIDSICETCEELKF 84
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
+PTP+Q IP LEG+D++GLAQTGSGKTAAFA+P+L L E+P + +V+ PTREL
Sbjct: 85 TKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTREL 144
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP 200
AYQ++E F+ALGS + LR VVVGGM+++TQA +L +PHV++ATPGR+ LE
Sbjct: 145 AYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKG-- 202
Query: 201 PVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSA 258
FS RT KFLV+DEADR+LD+ F L + + +P+ R T LFSATMTS ++ L S
Sbjct: 203 --FSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLFSATMTSKVEKLQRASL 260
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
++T + L Q +F P KD +L++++S E+ G S IIF T
Sbjct: 261 VDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVS--ENAG-NSMIIFARTKSDTQ 317
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
+SLLL L A+ LH SQ+ RL AL++FKSG IL+ATDVASRGLDIP VDLV+N
Sbjct: 318 RISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVIN 377
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
YDIP + Y+HRVGRTARAGR G +V+ V+Q D++L IE +GK+L+ + + + V+
Sbjct: 378 YDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLDSYPLESEAVM 437
Query: 439 SDITRVYKARRVATMKLM-DDGFEEKAKERKKQK 471
RV +A R A ++ +DG ++++K KK++
Sbjct: 438 LFSERVAEASRAAIQEMKGEDGTKKRSKFDKKRR 471
>gi|357500171|ref|XP_003620374.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495389|gb|AES76592.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 431
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 187/405 (46%), Positives = 271/405 (66%), Gaps = 7/405 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL E V+ C+++G + P +Q IP LEGKD++GLA+TGSGKT AFALPILH
Sbjct: 3 SFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAETGSGKTGAFALPILH 62
Query: 121 RLAEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L E P A V++PTRELA Q++EQF+ALGS + ++C V+VGG+D++ Q+ +
Sbjct: 63 ALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVKIAKL 122
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ TPGR+ L+ +R K+LVLDEADR+L+ FEE L + +P+ R+
Sbjct: 123 PHIIVGTPGRVLDHLKNTKGFS--LARLKYLVLDEADRLLNEDFEESLNEILGMIPRERR 180
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT ++ L + E + TV+TLKQQY F+P KD YL+++L++
Sbjct: 181 TFLFSATMTKKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILTE 240
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
M ++++F TC S LL+L+L L +A+ ++ SQ +RL AL++FKSG IL
Sbjct: 241 MAG---STSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 297
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
L TDVASRGLDIP VD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q +++ +
Sbjct: 298 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQ 357
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++GK+L E+ E+EVL RV +A+R+A K+ + G +++
Sbjct: 358 IEKLIGKKLPEYPANEEEVLLLEERVGEAKRLAATKMKESGGKKR 402
>gi|388856716|emb|CCF49676.1| probable DEAD box protein (putative RNA helicase) [Ustilago hordei]
Length = 556
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 198/444 (44%), Positives = 279/444 (62%), Gaps = 8/444 (1%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P+ T T ST+ F+ LG+ V+ C +G + PTP+Q IP+ L+ +DV+GLAQTGSGK
Sbjct: 100 PSITPTGSTIAFSDLGVIPQIVEACTNMGFKHPTPIQVKSIPEALQSRDVIGLAQTGSGK 159
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
TAAF +PIL L ++P A V+ PTRELAYQ+++Q +ALGS + +R +VGGMD+++
Sbjct: 160 TAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMS 219
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q+ +L RPHV++ATPGR++ LE ++LV+DEADR+LD+ F + +
Sbjct: 220 QSIALSKRPHVIVATPGRLQDHLENTKGFS--LRGLQYLVMDEADRLLDMDFGPIIDKLL 277
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
Q +P+ R+T+LFSATMT+ + L S E + TV TLKQ Y+F+P KD
Sbjct: 278 QSIPRERRTMLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDT 337
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL+H+ + E G S I+F T LS+LL L A+ LH SQ RL AL++F
Sbjct: 338 YLVHLAN--EQAG-HSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKF 394
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G +IL+ATDVASRGLDIP VDLV+NYDIP +DY+HRVGRTARAGR G +V+ VTQ
Sbjct: 395 KTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQ 454
Query: 411 NDVDLIHEIEAVVGKQLEEFEC--KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
DV+L+ IEAV+ ++ EF ++ V+ RV +A R A +L D G K
Sbjct: 455 YDVELLQRIEAVIALKMTEFPGGNDKEAVMLLSERVAEAHRAAVRELKDKGVGGAGGSGK 514
Query: 469 KQKLKMLAEKGSLKKRSEKRKKSG 492
+++ KM + G R + + + G
Sbjct: 515 RKR-KMDGKYGDEMDRDDDQVQPG 537
>gi|452977644|gb|EME77410.1| hypothetical protein MYCFIDRAFT_83332 [Pseudocercospora fijiensis
CIRAD86]
Length = 498
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 185/400 (46%), Positives = 267/400 (66%), Gaps = 6/400 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E C L +RPT +Q IP LEGKD++GLA+TGSGKTAAFALPIL
Sbjct: 75 TFADLGVREELCDACDSLNFKRPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPILQ 134
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + L++ PTRELAYQ+++QF+ALGS + +RC V+VGGMD++ QA +L +PH
Sbjct: 135 ALLDKPQPLFGLILAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVPQAVALAKKPH 194
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ATPGR+ +E K+LV+DEADR+LD+ F L + Q L ++R+T+
Sbjct: 195 IVVATPGRLLDHMENTKGFS--VKHFKYLVMDEADRLLDLDFGPILDKILQELNRDRRTM 252
Query: 241 LFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM++ L +L + N + ++TV+ L Q+Y+FIP KD+YL+++L
Sbjct: 253 LFSATMSTKLNSLTRAALQNPVRVSISESSYQTVKNLMQRYMFIPHKYKDIYLVYLL--- 309
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ ++ IIF T ++ +L L + A+ LH +QS RL AL++F+ G IL+
Sbjct: 310 DEFAGKTCIIFTRTIHETQRIAYVLRALGRSAIPLHGQMNQSARLGALNKFRGGSRDILV 369
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VDLVLN+D+P + YVHRVGRTARAG+ G+A+S VTQ D+++ I
Sbjct: 370 ATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISIVTQYDIEIYQRI 429
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDG 459
E +GK+LEE + +EV+ RV +A+RVA +L +D
Sbjct: 430 EKALGKKLEEHATEREEVMVFAPRVAEAQRVAITELKNDA 469
>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 848
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 190/405 (46%), Positives = 261/405 (64%), Gaps = 5/405 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D +F LG+ + +LG T +Q +P EGKDV+GLA+TGSGKT AFAL
Sbjct: 403 DIKASFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFAL 462
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL L E+P + A+++ PTRELA+Q+ E +ALG G+ L+ +VGG+D+ Q+ +L
Sbjct: 463 PILQALLENPQRLFAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALA 522
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PHVVIATPGR+ LE K+LVLDEADR+L + FEEE+ V LP+
Sbjct: 523 LKPHVVIATPGRLVDHLENTKGFS--LRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRE 580
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMTS + L S E F T +TL QQY+FIP KD YL +VL
Sbjct: 581 RRTFLFSATMTSKVAKLQRASLKNPARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVL 640
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
++ +S I+FVSTC + ++LLL L +AV LH Q +RL AL +FKSGQ
Sbjct: 641 NEFAG---QSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRN 697
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVASRGLDIP+VDLV+N +IP + +DY+HRVGRTARAGR G +++FVTQ DV++
Sbjct: 698 VLIATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVY 757
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFE 461
+EA++G++L + C E+ VL RV +A+R+A ++ + F
Sbjct: 758 QRMEALIGQKLPPYVCDEETVLVLQERVGEAQRMAAREMREADFN 802
>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
gi|74897202|sp|Q54VT4.1|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
Full=DEAD box protein 47
gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
Length = 546
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 178/406 (43%), Positives = 263/406 (64%), Gaps = 5/406 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
VTF LG+ + C +LG +P +Q IP L+G+D++GLAQTGSGKTAAF +P+
Sbjct: 118 NVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPV 177
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L +L E P G+ L + PTRELAYQ+A+QF A+GS + ++ V+VGG+D ++Q+ +L +
Sbjct: 178 LQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKK 237
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHVV+ +PGR+ LE K+ ++DEADR+ FEEE+ + + +PK R
Sbjct: 238 PHVVVGSPGRVLHHLEHTKGFN--LRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERN 295
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMTS + L S + ++TV+TL QQY+F+P KD YL ++L++
Sbjct: 296 TYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNE 355
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ IIF STC S ++++L L A+ ++ Q +RL++L++FK G +IL
Sbjct: 356 LAG---NLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSIL 412
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VDLV+NYD+P ++YVHRVGRTARAG G A++ VTQ DV++
Sbjct: 413 VATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQR 472
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
IE V+ K+L+ F C+E+ VL + RV +A R+AT +L D + +
Sbjct: 473 IEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNYSSSS 518
>gi|336386445|gb|EGO27591.1| hypothetical protein SERLADRAFT_360268 [Serpula lacrymans var.
lacrymans S7.9]
Length = 520
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 194/457 (42%), Positives = 277/457 (60%), Gaps = 24/457 (5%)
Query: 38 AKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG 97
++ T + N PN+ T + +F L ++ + + +R PT +Q CIP +L G
Sbjct: 56 SRATAGSRAPNTKPNTPTLHQSFSFDDLNISSPLLAALSRMSIRTPTEIQVACIPPLLSG 115
Query: 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157
+D +G A+TGSGKT AFALPIL +L+EDPYG+ ALV+TPTRELA+Q+++QF LG+GL +
Sbjct: 116 RDCIGNAKTGSGKTIAFALPILQKLSEDPYGIFALVLTPTRELAFQISDQFAVLGAGLSI 175
Query: 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217
R V+VGGMD++TQA L NRPHVV+ATPGRI L SR KFLVLDEADR+
Sbjct: 176 RTAVIVGGMDMMTQALELDNRPHVVVATPGRIVDHLRSSSG-EWSLSRIKFLVLDEADRL 234
Query: 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL----SANKAYFYEAYEGFKTV 273
L F EL +F LPK RQT LF+AT+T + L E+ K + + +TV
Sbjct: 235 LTPTFSPELSYLFDVLPKERQTCLFTATLTPSIDKLAEVPPRPGKQKPFIHRMNANIETV 294
Query: 274 ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR-----------------SAIIFVSTCRS 316
TL Q ++ +P +V++ YL H+L ++ IIF + R+
Sbjct: 295 VTLNQNFVLVPSHVRETYLYHLLCNPPELAASLRRIPPDTEKRELVQPPPTIIFCTKPRT 354
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
L+ LL+ L + ALHS +Q +RL++L F+S +L++TDV +RGLDI V +V
Sbjct: 355 AAYLTSLLKTLSIRSTALHSRLTQRERLTSLSLFRSSVIPVLVSTDVGARGLDIEDVAMV 414
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
+N+D+P P +Y HRVGRTARAG+ G+A+SFVT+ D + + +IE+ +G +L E E +
Sbjct: 415 INWDLPNEPEEYTHRVGRTARAGKAGIAISFVTEKDEERVLKIESRIGTKLAEMILPEGK 474
Query: 437 VLSDITRVYKARRVATMKLMDDGF--EEKAKERKKQK 471
VL +T V A+R+A M+L D F E+ KKQK
Sbjct: 475 VLEKLTSVSTAKRLANMELHDSDFGKREEIHNIKKQK 511
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
Length = 472
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 202/455 (44%), Positives = 292/455 (64%), Gaps = 21/455 (4%)
Query: 31 PEPESKNAKTTQLEKFTNPDPNSTTTDSTV---------TFAGLGLAEWAVQTCKELGMR 81
PE S T+ E D + T D +F LG+ + + C+ +G +
Sbjct: 14 PEHGSDAESTSSHESVAQQDDTAETQDEAAATETRPAPKSFKDLGIIDQLCEACETMGYK 73
Query: 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141
PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P L++ PTRELA
Sbjct: 74 APTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELA 133
Query: 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPP 201
+Q+++ F++LGS +++RC V+VGGMD+++Q+ +L +PH+++ATPGR+ LE
Sbjct: 134 FQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG--- 190
Query: 202 VFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-A 258
FS RT K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L S +
Sbjct: 191 -FSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLS 249
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
N + ++TV TL Q Y+F+P KD+YL+++L+ E +G +SAIIF T
Sbjct: 250 NPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLN--EFVG-QSAIIFTRTVHETQ 306
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
+S LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD+VLN
Sbjct: 307 RISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLN 366
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
+D+P + YVHRVGRTARAG+ G+A+SFVTQ DV++ IE +GK+L+E+E ++ EV+
Sbjct: 367 FDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVM 426
Query: 439 SDITRVYKARR--VATMKLMDDGFEEKAKERKKQK 471
RV +A+R + MK D+ KAK+ K K
Sbjct: 427 VLAERVGEAQRQAIVEMKNFDEKRGTKAKKFGKGK 461
>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
Length = 434
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 261/406 (64%), Gaps = 5/406 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTF LG+ + C G ++P +Q IP L+G+D++GLAQTGSGKT AF +P+L
Sbjct: 10 VTFESLGVHPQIIDACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVL 69
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L E P G+ L I PTRELA+Q+AEQF ALG+ + ++ V+VGG+D +TQ+ L +P
Sbjct: 70 QKLLEQPQGIFCLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQLAKKP 129
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++I +PGRI LE K+ ++DEADR+ FEEE+ + + +PK R T
Sbjct: 130 HIIIGSPGRIIFHLENTKGFN--LRSIKYFIMDEADRLFGADFEEEVNNILKVIPKERNT 187
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S + ++TV+TL QQY+FIP K+ YL+++L+++
Sbjct: 188 FLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPFKYKECYLVYILNEL 247
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
IIF STC S + ++L+L L A+ ++ Q++RL++L +FK G +IL+
Sbjct: 248 AG---NLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSILV 304
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP VDLV+NYD+P ++Y+HRVGRTARAG G A++ VTQ DV++ I
Sbjct: 305 ATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQRI 364
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
E V+ K+L+EF C+E VL + RV +A R AT KL D G+ K
Sbjct: 365 EFVLKKKLDEFPCQEDTVLIFLERVTQAVREATNKLKDSGYSSGDK 410
>gi|390598048|gb|EIN07447.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 449
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 190/404 (47%), Positives = 267/404 (66%), Gaps = 6/404 (1%)
Query: 49 PDPN-STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
P P ++T+ + TF LGL ++ +L + PT +Q +P LEG+D++G+A TG
Sbjct: 2 PSPEEASTSTAEPTFKSLGLINPLLEALDQLKYKEPTDIQREALPHALEGRDIIGVASTG 61
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
SGKTAAFALPIL +L E+P G+ A V+ PTRELAYQ+++QF+ALGS + +RC V+VGGMD
Sbjct: 62 SGKTAAFALPILQKLWEEPRGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVLVGGMD 121
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
L+ QA +L +PH+++ATPGR++ L E KFLVLDEADR+LD+ F +
Sbjct: 122 LIDQAVALAKKPHIIVATPGRLQQHLTETKGFS--LRGLKFLVLDEADRLLDLDFGPVID 179
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287
+ + +PK R T LFSATMT+ + L S + E ++TV TL Q Y+FIP +
Sbjct: 180 QILKIIPKERTTYLFSATMTTKVAKLQRASLSNPIRVEVSSKYQTVSTLLQYYLFIPLSQ 239
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
KDV+L+++ + + S IIF T LS++L L AV LH SQS RL AL
Sbjct: 240 KDVHLIYLANSLAS---NSIIIFTRTVHDAQRLSIMLRILGFPAVPLHGQLSQSARLGAL 296
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
+FKSG +L+ATDVASRGLDIP+VD+V+N+DIP + +DY+HRVGRTARAGR G +++
Sbjct: 297 AKFKSGGRKVLVATDVASRGLDIPSVDIVINFDIPNHSKDYIHRVGRTARAGRSGKSITL 356
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
VTQ DV+LI IE V+ K++E + ++E+ RV +A R+A
Sbjct: 357 VTQYDVELIQRIEEVIEKKMELWPTDKEEIALLRERVNEAGRLA 400
>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
Length = 474
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 191/405 (47%), Positives = 265/405 (65%), Gaps = 6/405 (1%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
T T + TF LG+ + C LG + PTP+Q IP L+G+D++GLA+TGSGKTAA
Sbjct: 43 TDTKAPKTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAA 102
Query: 114 FALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
FALPIL L E P LV+ PTRELA Q+ E F+ALGS + +RC V+VGGMD+++Q+
Sbjct: 103 FALPILQALMEKPQPYFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSI 162
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
SL +PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + L
Sbjct: 163 SLGKKPHIIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPVLDKILKVL 220
Query: 234 PKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
P+ R+T LFSAT++S +++L S +N + ++TV TL Q YIFIP KD+YL
Sbjct: 221 PRERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYL 280
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+H+L++ ++ IIF T LS+LL L A+ LH SQS RL AL +F+S
Sbjct: 281 VHILNEFPG---QTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRS 337
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G IL+ATDVA+RGLDIP VDLVLN+D+P + Y+HRVGRTARAG+ G A+S VTQ +
Sbjct: 338 GSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYE 397
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
V++ IEA +GKQL E + +++EV+ RV A+R+A ++ D
Sbjct: 398 VEIWQRIEAALGKQLPEHKTEKEEVMVLSDRVGDAQRLAVTEMKD 442
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 197/455 (43%), Positives = 292/455 (64%), Gaps = 21/455 (4%)
Query: 25 PEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVT--------FAGLGLAEWAVQTCK 76
PE + E S + Q + DP T ++T T F LG+ + + C+
Sbjct: 14 PEHGSDTESTSSHKSVAQQD-----DPLETQDEATATESRPAPKSFKDLGIIDQLCEACE 68
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
+G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P L++ P
Sbjct: 69 TMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAP 128
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA+Q+++ F++LGS +++RC V+VGGMD+++Q+ +L +PH+++ATPGR+ LE
Sbjct: 129 TRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENT 188
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L
Sbjct: 189 KGFS--LRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRA 246
Query: 257 S-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
S +N + ++TV TL Q Y+F+P KD+YL+++L+ E +G +S IIF T
Sbjct: 247 SLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLN--EFVG-QSTIIFTRTVH 303
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
+S LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD+
Sbjct: 304 ETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDV 363
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435
VLN+D+P + YVHRVGRTARAG+ G+A+SFVTQ DV++ IE +GK+L+E+E ++
Sbjct: 364 VLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKD 423
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
EV+ RV +A+R A M++ + F+EK + K+
Sbjct: 424 EVMVLAERVGEAQRQAIMEMKN--FDEKRGTKAKK 456
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM
1558]
Length = 491
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 195/431 (45%), Positives = 271/431 (62%), Gaps = 7/431 (1%)
Query: 25 PEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPT 84
PE S N +P P + DS TFA LG+ Q+C L + PT
Sbjct: 13 PENSKASPSSSDNENVHSTRNSQSPGP--SNDDSPRTFASLGIIPELCQSCATLAFKAPT 70
Query: 85 PVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144
P+Q IP L+G+DV+GLAQTGSGKTAAF+LPIL +L E+P AL++ PTRELAYQ+
Sbjct: 71 PIQVEAIPSALQGRDVIGLAQTGSGKTAAFSLPILQKLWENPQPFFALILAPTRELAYQI 130
Query: 145 AEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS 204
++Q +LGS L +R V+VGGMD+++Q+ +L RPHV++ATPGR+ LE
Sbjct: 131 SQQVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFS--LK 188
Query: 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFY 264
KFLV+DEADR+LD+ F + + + +PK R T LFSATMT+ + L S NK
Sbjct: 189 NVKFLVMDEADRLLDMDFGPIIDKILKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRV 248
Query: 265 EAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLL 324
E + TV TL Q Y+ +P KD +L+++++++ S IIF T LS++L
Sbjct: 249 EVATKYSTVSTLLQHYLLLPLKAKDTHLLYIVTELSSC---SMIIFTRTVVDAQRLSIML 305
Query: 325 EELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRY 384
L A+ LH SQS RL++L++FKSG +IL+ATDVASRGLDIP VDLV+NYD+P
Sbjct: 306 RRLGFPAIPLHGQMSQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVVNYDMPIN 365
Query: 385 PRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRV 444
+DYVHRVGRTARAGR G +++ VTQ DV+++ IEA +GK++E F ++ V + V
Sbjct: 366 SKDYVHRVGRTARAGRSGKSITMVTQYDVEILQRIEAHIGKKMENFAVDKEAVAAFSETV 425
Query: 445 YKARRVATMKL 455
+A R A +++
Sbjct: 426 ARANREAALEM 436
>gi|393220360|gb|EJD05846.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 450
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 193/419 (46%), Positives = 275/419 (65%), Gaps = 10/419 (2%)
Query: 48 NPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
+P+ ST+T S +F LG+ ++ +++ ++PT +Q +P + G+D++G+A+TG
Sbjct: 3 SPEEASTSTSSPPSFKELGVIGPLLEALEQMNFKKPTDIQAEALPHAISGRDIIGVAETG 62
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
SGKT AFALPIL RL E+P G+ A V+ PTRELAYQ+++QF++LGS + +RC V+VGGM+
Sbjct: 63 SGKTVAFALPILQRLWEEPKGLFACVLAPTRELAYQISQQFESLGSAIGVRCAVIVGGMN 122
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
++ QA +L RPH+V+ATPGR+ LE KFLVLDEADR+LD+ F +
Sbjct: 123 MVDQAVALAKRPHIVVATPGRLNDHLENTKGFS--LRGIKFLVLDEADRLLDMDFGPIID 180
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287
+ + +PK R T LFSATMT+ + L S E + + TV TL Q Y+FIP
Sbjct: 181 KILKVIPKERTTYLFSATMTTKVAKLQRASLTNPVRVEVSKKYTTVSTLLQYYLFIPYKQ 240
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
K+V L+H+ + + S IIF T C L+L+L+ L +V LH SQS RL AL
Sbjct: 241 KEVNLIHMCNTLSQ---NSIIIFTRTVMDCQRLALILKTLGFSSVPLHGQLSQSARLGAL 297
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
+FKSG IL+ATD+ASRGLDIP+VD V+NYDIP + +DY+HRVGRTARAGR G +++
Sbjct: 298 AKFKSGGRNILVATDIASRGLDIPSVDAVINYDIPSHSKDYIHRVGRTARAGRAGNSITL 357
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
VTQ DV+LI IEAV+GK+++ + +E+ RV +A R+A +L +E+AKE
Sbjct: 358 VTQYDVELIQRIEAVIGKKMDLWPTDAEEIALLRERVDEAARMAAKEL-----KEQAKE 411
>gi|403412636|emb|CCL99336.1| predicted protein [Fibroporia radiculosa]
Length = 974
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 195/429 (45%), Positives = 272/429 (63%), Gaps = 6/429 (1%)
Query: 44 EKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGL 103
E+ T D + + F LGL + ++ ++L + PT +Q +P L+G+D++G+
Sbjct: 521 EEATTSDAPAPVPAAATDFRSLGLIDPLLEALEQLNFKHPTDIQVEALPHALQGRDIIGV 580
Query: 104 AQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVV 163
A TGSGKTAAFALPIL +L E+P G+ A V+ PTRELAYQ+++QF+ LGS + +RC +V
Sbjct: 581 ASTGSGKTAAFALPILQKLWEEPKGLFACVLAPTRELAYQISQQFEGLGSAMGVRCVTIV 640
Query: 164 GGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223
GG+D++ Q+ +L RPH+V+ATPGR+ LE KFLVLDEADR+LD+ F
Sbjct: 641 GGLDMMAQSVALAKRPHIVVATPGRLIDHLENTKGFS--LRGLKFLVLDEADRLLDMDFG 698
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFI 283
+ + + +PK R T LFSATMT+ + L S + E E + TV TL Q Y+FI
Sbjct: 699 PIIDKILKIIPKERTTYLFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFI 758
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P KDV+L+++ + + S IIF T LS++L L AV LH SQS R
Sbjct: 759 PLVQKDVHLIYLANTLAQ---NSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSAR 815
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
L AL +FKSG IL+ATDVASRGLDIP VD+V+NYDIP + +DY+HRVGRTARAGR G
Sbjct: 816 LGALGKFKSGGRKILVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGK 875
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDD-GFEE 462
+V+ VTQ DV+LI IE +GK++E + +E+ RV +A RVA +L + G ++
Sbjct: 876 SVTLVTQYDVELIQRIETTIGKKMELWPTDAEEIALLRERVDEASRVAINELKEQAGMKK 935
Query: 463 KAKERKKQK 471
RK++K
Sbjct: 936 SVHGRKRRK 944
>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
Length = 474
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 190/403 (47%), Positives = 264/403 (65%), Gaps = 6/403 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T + TF LG+ + C LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFA
Sbjct: 45 TKAPKTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFA 104
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL L E P LV+ PTRELA Q+ E F+ALGS + +RC V+VGGMD+++Q+ SL
Sbjct: 105 LPILQALMEKPQPYFGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISL 164
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+
Sbjct: 165 GKKPHIIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPVLDKILKVLPR 222
Query: 236 NRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
R+T LFSAT++S +++L S +N + ++TV TL Q YIFIP KD+YL+H
Sbjct: 223 ERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVH 282
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L++ ++ IIF T LS+LL L A+ LH SQS RL AL +F+SG
Sbjct: 283 ILNEFPG---QTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGS 339
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ATDVA+RGLDIP VDLVLN+D+P + Y+HRVGRTARAG+ G A+S VTQ +V+
Sbjct: 340 RDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVE 399
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
+ IEA +GKQL E + +++EV+ RV A+R+A ++ D
Sbjct: 400 IWQRIEAALGKQLPEHKTEKEEVMVLSDRVGDAQRLAVTEMKD 442
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 190/413 (46%), Positives = 269/413 (65%), Gaps = 8/413 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E C LG + PT +Q IP L+GKDV+GLA+TGSGKTAAFALPIL
Sbjct: 89 TFAELGVREELCDACISLGYKTPTAIQRESIPIALQGKDVIGLAETGSGKTAAFALPILQ 148
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E LV+ PTRELAYQ+++QF+ALGS ++++C V+VGGMD+ Q +L +PH
Sbjct: 149 ALLEKQDHYFGLVLAPTRELAYQISQQFEALGSLINVKCAVIVGGMDMTPQQIALAKKPH 208
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE + K+LV+DEADR+LD+ F L + Q LP+ R+T+
Sbjct: 209 IIVATPGRLMDHLENTKGFS--LRKLKYLVMDEADRLLDLDFGPILDKILQVLPRERRTM 266
Query: 241 LFSATMTSDLQTLLELSANKAYFYE-AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM++ L L + + ++TV+ LKQ YIFIP KD+YL++++++
Sbjct: 267 LFSATMSTKLDNLTRAALQSPVRVSISSSSYQTVKNLKQSYIFIPHKFKDIYLVYLVNEF 326
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ IIF T ++ LL L + A+ LH +QS RL AL++F+ G IL+
Sbjct: 327 AG---QTCIIFTRTINETARIAFLLRALGRSAIPLHGQLNQSARLGALNKFRGGSRDILV 383
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VDLVLNYD+P + YVHRVGRTARAG+ G+A+S VTQ DV++ I
Sbjct: 384 ATDVAARGLDIPSVDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDVEVYQRI 443
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
E +GK+L EF ++ EV+ RV +A+RVA ++ ++ EK +K Q +
Sbjct: 444 EKALGKKLAEFGTEKDEVMVFAQRVQEAQRVAVQEMKNE--HEKRGNKKGQGI 494
>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
gi|118595828|sp|Q1E1N5.1|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
gi|392870806|gb|EAS32639.2| ATP-dependent rRNA helicase RRP3 [Coccidioides immitis RS]
Length = 474
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 204/478 (42%), Positives = 299/478 (62%), Gaps = 11/478 (2%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVT--FAGLGLAEWAVQTC 75
K + S PQ E E +++T+Q P N ++T T F LG+ + + C
Sbjct: 5 KRRKLSHTPPQGEAEDGFSDSETSQASLQETPG-NDEKIEATTTKSFKDLGIIDSLCEAC 63
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135
LG + PT +Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P + LV+
Sbjct: 64 DSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLA 123
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELAYQ+++QF+ALGS + +RC V+VGGMD+++QA +L +PH+++ATPGR+ LE
Sbjct: 124 PTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLEN 183
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
K+LV+DEADR+LD+ F L + + LPK R+T LFSATM+S +++L
Sbjct: 184 TKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQR 241
Query: 256 LS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
S +N + ++TV TL Q + IP KD+YL+++L++ +S IIF T
Sbjct: 242 ASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPG---QSVIIFTRTV 298
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
L++LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD
Sbjct: 299 NETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVD 358
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
LVLNYD+P + Y+HRVGRTARAG+ G A S VTQ DV++ IEA +GK+L+E++ ++
Sbjct: 359 LVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEK 418
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
+EV+ RV +A+R A + M + E + K+ + + + KG+ + R E ++ G
Sbjct: 419 EEVMVLSDRVGEAQRHAITE-MKELHENRGKKGATLRNRRIG-KGAKRSRDEMDREEG 474
>gi|449017072|dbj|BAM80474.1| DEAD box protein [Cyanidioschyzon merolae strain 10D]
Length = 453
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 202/439 (46%), Positives = 272/439 (61%), Gaps = 19/439 (4%)
Query: 47 TNPDPNSTT-TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
T P N T +FA LG+ C+ L R PTP+Q IP L GKD++GLAQ
Sbjct: 5 TKPVENQVAPTTGESSFAALGVCAVLCDACRLLNYREPTPIQREAIPAALAGKDIVGLAQ 64
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TGSGKTAAFA+PIL L EDP ALV++PTRELA+Q++EQF ALGS + +R +VGG
Sbjct: 65 TGSGKTAAFAIPILQFLLEDPRPYFALVLSPTRELAFQISEQFLALGSEIGVRVATLVGG 124
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225
MD++ QA +L RPHVV+ TPGR+ L + LVLDEADR+L++ FEEE
Sbjct: 125 MDMVGQAVTLAKRPHVVVGTPGRVVDHLTATKGF--TLKHVRILVLDEADRLLNMDFEEE 182
Query: 226 LRVVFQCLPKN-----------RQTLLFSATMTSDLQTL--LELSANKAYFYEAYEGFKT 272
L + +P++ R+T LFSATMTS + L L + + E + T
Sbjct: 183 LDQILAAVPRSDADPSKGETFARKTYLFSATMTSQVAKLQRASLRSKETVRIEVSAKYST 242
Query: 273 VETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV 332
VETL Q Y+FIP+ KD YL ++ ++ + S I+F T S L+L+L L AV
Sbjct: 243 VETLVQHYLFIPEKYKDCYLTYLFEEL--VARHSCIVFTDTQSSAQRLALMLRNLGYGAV 300
Query: 333 ALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRV 392
+H SQ RL AL++FKSG+ IL+ATDVASRGLDIP VD V+NYDIP + +DY+HRV
Sbjct: 301 CIHGGMSQPNRLGALNQFKSGEKHILVATDVASRGLDIPLVDFVINYDIPPHGKDYIHRV 360
Query: 393 GRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE-VLSDITRVYKARRVA 451
GRTARAGR G A+S V+Q DV+L ++E ++G+QLE +QE VL + RV +A R+A
Sbjct: 361 GRTARAGRTGRAISLVSQYDVELFQKVEKLLGRQLEALAGVQQEHVLLLLDRVSEAARLA 420
Query: 452 TMKLMDDGFEEKAKERKKQ 470
++ ++ A RK++
Sbjct: 421 VQEIREEKLVLHAAARKRR 439
>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
Length = 410
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/373 (49%), Positives = 254/373 (68%), Gaps = 5/373 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
GL + +TC +L + PT +Q IP L+GKDV+GLA+TGSGKTAAFALPIL L E
Sbjct: 1 GLVDTLCKTCIDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQ 60
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P AL++TPTRELA+Q++EQF ALGS + ++ V+VGGMD+ Q L +PH++IAT
Sbjct: 61 PQRYFALILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHIIIAT 120
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE + KFLV+DEADR+L++ FE E+ + + +P+ R+TLLFSAT
Sbjct: 121 PGRLVDHLENTKGFN--LRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSAT 178
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+++
Sbjct: 179 MTKKVQKLQRASLRNPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAG---N 235
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S +IF TC + +LLL L AV LH SQ++R++AL +FK+ +IL++TDVAS
Sbjct: 236 SFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVAS 295
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L IE ++ K
Sbjct: 296 RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISK 355
Query: 426 QLEEFECKEQEVL 438
QL + +E+EV+
Sbjct: 356 QLPLYPTEEEEVM 368
>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
Length = 474
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 195/440 (44%), Positives = 274/440 (62%), Gaps = 11/440 (2%)
Query: 19 SKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKEL 78
S T S+P P P + + + + D + + F LG+ + C L
Sbjct: 13 SHTSSEPAPDDVPSTSERREEAPEESSEEHADAKAPKS-----FKDLGIIDSLCDACTSL 67
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138
+ PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P LV+ PTR
Sbjct: 68 RYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPYFGLVLAPTR 127
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA Q++E F+ALGS + +RC V+VGGMD+++Q+ SL +PH+++ATPGR+ LE
Sbjct: 128 ELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLENTKG 187
Query: 199 IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS- 257
K+LV+DEADR+LD+ F L + + LP+ R+T LFSAT++S +++L S
Sbjct: 188 FS--LRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASL 245
Query: 258 ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSC 317
+N + ++TV TL Q YIFIP KDVYL+H+L++ +S IIF T
Sbjct: 246 SNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDVYLVHILNEFPG---QSTIIFTRTVNET 302
Query: 318 HLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377
L++LL L A+ LH SQS RL AL +F+SG IL+ATDVA+RGLDIP VDLVL
Sbjct: 303 QRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNILVATDVAARGLDIPAVDLVL 362
Query: 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437
N+D+P + Y+HRVGRTARAGR G A+S VTQ +V++ IE +GKQL E + +++EV
Sbjct: 363 NFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQRIEVALGKQLPEHKTEKEEV 422
Query: 438 LSDITRVYKARRVATMKLMD 457
+ RV A+R+A ++ D
Sbjct: 423 MVLSDRVGDAQRMAVTEMKD 442
>gi|443893885|dbj|GAC71341.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 562
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 190/414 (45%), Positives = 265/414 (64%), Gaps = 7/414 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTFA LG+ ++ C +G + PTP+Q IP+ L+ +DV+GLAQTGSGKTAAF +PIL
Sbjct: 115 VTFADLGVIPQIIEACTNMGFQHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPIL 174
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L ++P A V+ PTRELAYQ+++Q +ALGS + +R +VGGMD+++Q+ +L RP
Sbjct: 175 QALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRP 234
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HV++ATPGR++ LE ++LV+DEADR+LD+ F + + Q +P+ R+T
Sbjct: 235 HVIVATPGRLQDHLENTKGFS--LRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRT 292
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
+LFSATMT+ + L S E + TV TLKQ Y+F+P KD YL+H+ +
Sbjct: 293 MLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLAN-- 350
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E G S I+F T LS+LL L A+ LH SQ RL AL++FK+G +IL+
Sbjct: 351 EQAG-HSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 409
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP VDLV+NYDIP +DY+HRVGRTARAGR G +V+ VTQ DV+L+ I
Sbjct: 410 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 469
Query: 420 EAVVGKQLEEFEC--KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
EAV+ ++ EF ++ V+ RV +A R A +L D G K+++
Sbjct: 470 EAVIALKMTEFPGGNDKEAVMLLSERVAEAHRAAVRELKDKGVGSAGGSGKRKR 523
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 266/417 (63%), Gaps = 7/417 (1%)
Query: 49 PDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
PD ST+ TF LGL + +++ ++L + PT +Q +P LEG+D++G+A T
Sbjct: 4 PDEASTSLSPAPPPTFESLGLIKPLLESLEQLNFKIPTEIQVEALPHALEGRDIIGVAAT 63
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKTAAF LPIL +L E+P G+ A V+ PTRELAYQ+++Q ++LGS + RC V+VGGM
Sbjct: 64 GSGKTAAFGLPILQKLWEEPKGLFACVLAPTRELAYQISQQLESLGSAMGARCAVIVGGM 123
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D+ QA +L RPH+V+ATPGR+ LE+ KFLVLDEADR+LD+ F +
Sbjct: 124 DMPAQAIALAKRPHIVVATPGRLMDHLEKTKGFN--LRNIKFLVLDEADRLLDLDFGTII 181
Query: 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + +PK R T LFSATMT+ + L S + E ++TV TL Q Y+ +P
Sbjct: 182 DKILKLIPKERTTYLFSATMTTKVAKLQRASLSNPVRVEVSTKYQTVSTLLQYYLLMPLK 241
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KD YL+++ + + S IIF T LS++L L AV LH SQSQRL A
Sbjct: 242 DKDAYLVYLANTLAQ---NSIIIFTRTVHDASRLSIILRTLGFPAVPLHGQLSQSQRLGA 298
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L +FKSG +L+ATDVASRGLDIP+VD+V+N+DIP + +DY+HRVGRTARAGR G +++
Sbjct: 299 LGQFKSGGRRVLVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSIT 358
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
VTQ DV+L+ IE V+GK++E + +QE+ R +A RVA +L D K
Sbjct: 359 LVTQYDVELVQRIEQVIGKKMELWPTDDQEIALLRERADEAGRVAAAELRDQAMNGK 415
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 200/458 (43%), Positives = 298/458 (65%), Gaps = 36/458 (7%)
Query: 22 RSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDS-TVTFAGLGLAEWAVQTCKELGM 80
R++PEP + + E ++A P D+ TF LG+ + + C++L
Sbjct: 27 RAEPEPSDDEQSEEESAT------LEEPSAEEAVEDAPKKTFKDLGIVDALCEACEKLNY 80
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
+ PTP+Q IP LEG+D++GLA+TGSGKTAAFALP+L L + P + LV+ PTREL
Sbjct: 81 KYPTPIQEKSIPVALEGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTREL 140
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP 200
A Q+ + F+ALGS + LRC V+VGG+D++ QA +L +PH+++ATPGR+ LE+
Sbjct: 141 ATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVDHLEKTKG-- 198
Query: 201 PVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----- 253
FS RT K+L++DEADR+LD+ F + + + +P+ R+T LFSAT++S +++L
Sbjct: 199 --FSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTYLFSATISSKIESLQRASL 256
Query: 254 -----LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+ +S+NK ++TV TL Q YIFIP KDVYL+++++ E +G +S I
Sbjct: 257 RDPVRVSISSNK---------YQTVSTLLQHYIFIPHVRKDVYLIYLIN--EHVG-KSTI 304
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IF T +S+LL L A+ LH SQ+ RL AL++F+SG IL+ATDVA+RGL
Sbjct: 305 IFTRTVWETQRISILLRTLGFGAIPLHGQLSQTSRLGALNKFRSGTRDILVATDVAARGL 364
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP+VD+VLNYD+P+ + Y+HRVGRTARAG+ G+A+S VTQ DV++ IEA +GK+L
Sbjct: 365 DIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISVVTQYDVEIFTRIEAALGKKLT 424
Query: 429 EFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
E+ +++EV + TRV +A+R A ++ M EE+ K+
Sbjct: 425 EYPTEKEEVFTFQTRVEEAQRHARVE-MKSFTEERGKK 461
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 189/396 (47%), Positives = 258/396 (65%), Gaps = 6/396 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LG+ E C LG + PT +Q IP L G+D++GLA+TGSGKTAAFALPIL
Sbjct: 59 SFADLGVNESLCDACTSLGFKTPTAIQREAIPLALSGRDIIGLAETGSGKTAAFALPILQ 118
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L DP LV+ PTRELAYQ+++QF+ALGS + +RC V+VGGMD++ QA +L +PH
Sbjct: 119 ALLHDPQPFFGLVLAPTRELAYQISQQFEALGSLIRVRCAVIVGGMDMVPQAIALAKKPH 178
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ATPGR+ LE K+L++DEADR+LD+ F L + Q LP+ R+T
Sbjct: 179 IVVATPGRLLDHLENTKGFS--LRSLKYLIMDEADRLLDLDFGPILDKILQVLPRERRTA 236
Query: 241 LFSATMTSDLQTLLELSA-NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM + L L + N + ++TV L QQYIFIP KDVYL+H+L++
Sbjct: 237 LFSATMNTKLDNLTRAALRNPVRVSISTSSYQTVANLLQQYIFIPHKHKDVYLIHLLTEF 296
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ I+F T L+ LL L+ A+ LH QS RL AL++F+SG +IL+
Sbjct: 297 SG---QTCILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLGALNKFRSGSRSILV 353
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VDLV+N+D+P + YVHRVGRTARAG+ G+AVS VTQ DV++ I
Sbjct: 354 ATDVAARGLDIPSVDLVINFDLPPDSKTYVHRVGRTARAGKSGVAVSVVTQYDVEVFQRI 413
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
E +G++LEE +EV+ RV A+RVA ++
Sbjct: 414 EKALGRKLEERAVGREEVMVFAERVGAAQRVAVGEM 449
>gi|449547391|gb|EMD38359.1| hypothetical protein CERSUDRAFT_49063 [Ceriporiopsis subvermispora
B]
Length = 447
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 189/410 (46%), Positives = 264/410 (64%), Gaps = 5/410 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL E ++ +L PT +Q +P L+G+D++G+A TGSGKTAAFALPIL +
Sbjct: 15 FRSLGLIEPLLEAVDQLHYTTPTEIQAEVLPHALQGRDIIGVAATGSGKTAAFALPILQK 74
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L E+P G+ A V+ PTRELAYQ+++QF++LGS + +RC +VGGM ++ QA +L RPH+
Sbjct: 75 LWEEPKGLFACVMAPTRELAYQISQQFESLGSAIGVRCATIVGGMPIMDQAVALAKRPHI 134
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ATPGR+ LE KFLV+DEADR+LD+ F + + + +PK R T L
Sbjct: 135 VVATPGRLNDHLENTKGFS--LRGLKFLVMDEADRLLDMDFGPIIDKILKVIPKERTTYL 192
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATMT+ + L S + E E + TV TL Q Y+FIP KDV+L+++ + +
Sbjct: 193 FSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLANSLAQ 252
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
S IIF T LS++L L AV LH SQS RL AL +FKSG +L+AT
Sbjct: 253 ---NSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVAT 309
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLDIP+VD+V+NYDIP + +DY+HRVGRTARAGR G +V+ VTQ DV+L+ IEA
Sbjct: 310 DVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELVQRIEA 369
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
+GK++E + +E+ RV +A RVA +L + G +++++
Sbjct: 370 TIGKKMELWPTDAEEIALLRERVDEAGRVAVTELKEQGINGGHGRKRRRE 419
>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
gi|74699927|sp|Q4P3U9.1|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
Length = 551
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 269/422 (63%), Gaps = 8/422 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V F+ LG+ V+ C +G + PTP+Q IP+ L+ +DV+GLAQTGSGKTAAF +PIL
Sbjct: 104 VEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPIL 163
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L ++P A V+ PTRELAYQ+++Q +ALGS + +R +VGGMD+++Q+ +L RP
Sbjct: 164 QALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRP 223
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HV++ATPGR++ LE ++LV+DEADR+LD+ F + + Q +P+ R+T
Sbjct: 224 HVIVATPGRLQDHLENTKGFS--LRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRT 281
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
+LFSATMT+ + L S E + TV TLKQ Y+F+P KD YL+H+ +
Sbjct: 282 MLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLAN-- 339
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E G S I+F T LS+LL L A+ LH SQ RL AL++FK+G +IL+
Sbjct: 340 EQAG-HSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 398
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP VDLV+NYDIP +DY+HRVGRTARAGR G +V+ VTQ DV+L+ I
Sbjct: 399 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 458
Query: 420 EAVVGKQLEEFEC--KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
EAV+G ++ EF ++ V+ RV +A R A +L D G A K+K KM +
Sbjct: 459 EAVIGLKMTEFPGGNDKEAVMLLSERVAEAHRAAVRELKDKGVGS-AGGSGKRKRKMDGK 517
Query: 478 KG 479
G
Sbjct: 518 YG 519
>gi|443917623|gb|ELU38297.1| ATP-dependent rRNA helicase RRP3 [Rhizoctonia solani AG-1 IA]
Length = 1028
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 192/422 (45%), Positives = 272/422 (64%), Gaps = 15/422 (3%)
Query: 42 QLEKFTNPDPNSTTT--------DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK 93
Q E T PN T+ ++ TF LGL ++ K++G +PT +Q IP
Sbjct: 70 QSESGTEDSPNDVTSVAPVAPKSSASATFDSLGLISPLLEALKQVGYSKPTEIQAGIIPH 129
Query: 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153
LEGKDV+G+A+TGSGKTAAFALPIL +L ++P G+ A V+ PTRELAYQ+A+QF+ALGS
Sbjct: 130 ALEGKDVIGVAETGSGKTAAFALPILQKLWDEPRGLFACVLAPTRELAYQIAQQFEALGS 189
Query: 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213
+ +RC +VGGMD+++Q+ +L +PH+++ATPGR+ LE ++LVLDE
Sbjct: 190 AIGVRCATIVGGMDMMSQSIAL-GKPHIIVATPGRLNDHLENTKGF--SLRGLRYLVLDE 246
Query: 214 ADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTV 273
ADR+LD+ F + + + LP+ R T LFSATM++ + L S E + TV
Sbjct: 247 ADRLLDMDFGPVIDKILKVLPRERNTFLFSATMSTKVAKLQRASLQNPVRVEVNGKYSTV 306
Query: 274 ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA 333
TL Q Y+ P KDV+L+H+ + ++ S IIF T LS++L L AV
Sbjct: 307 STLLQYYLLTPFANKDVHLVHLAN---ELAANSIIIFTRTVHDAQRLSMVLRNLGFPAVP 363
Query: 334 LHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVG 393
LH SQS RL AL++FK+G ++L+ATDVAS GLDIPTVD+V+N+DIP + +DY+HRVG
Sbjct: 364 LHGQLSQSARLGALNKFKAGGRSLLIATDVAS-GLDIPTVDVVINFDIPTHSKDYIHRVG 422
Query: 394 RTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATM 453
RTARAGR G +++ VTQ DV+L+ IE V+GK++ EF + EV+ RV +A+R+A
Sbjct: 423 RTARAGRAGKSITLVTQYDVELLQRIEGVIGKKMMEFPIDKAEVMLLKERVGEAQRLAVQ 482
Query: 454 KL 455
+L
Sbjct: 483 EL 484
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 284/422 (67%), Gaps = 12/422 (2%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+S T + +F LG+ + + C +G + PTP+Q IP L+ +D++GLA+TGSGKT
Sbjct: 45 SSETKPAPKSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKT 104
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AAFALPIL L + P LV+ PTRELA+Q+++ F+ALGS +++RC V+VGGMD+++Q
Sbjct: 105 AAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQ 164
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDVGFEEELRVV 229
+ +L +PH+++ATPGR+ LE FS RT K+LV+DEADR+LD+ F L +
Sbjct: 165 SIALGKKPHIIVATPGRLLDHLENTKG----FSLRTLKYLVMDEADRLLDMDFGPLLDKI 220
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ LP+ R+T LFSATM+S +++L S +N + ++TV TL Q Y FIP K
Sbjct: 221 LKILPRERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYRFIPHKHK 280
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D+YL+++L+ E +G +SAIIF T +S LL L A+ LH SQS RL AL
Sbjct: 281 DIYLVYLLN--EFVG-QSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALG 337
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F+S IL+ATDVA+RGLDIP+VD+VLN+D+P + YVHRVGRTARAG+ G+A+SFV
Sbjct: 338 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFV 397
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV++ IE +GK+L+E++ ++ EV+ RV +A+R A M++ + F+EK R
Sbjct: 398 TQYDVEIWLRIEGALGKKLDEYDLEKDEVMVLAERVGEAQRQAIMEMKN--FDEKKGTRA 455
Query: 469 KQ 470
K+
Sbjct: 456 KK 457
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 189/420 (45%), Positives = 277/420 (65%), Gaps = 17/420 (4%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T S+ TF LG+ + K +G + PT +Q + L+GKD++GLA+TGSGKTAAF
Sbjct: 54 TIMSSTTFEKLGVCSELQEALKNMGYKCPTKIQAESLQYTLKGKDIIGLAETGSGKTAAF 113
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
A+P++ +L ++P A V++PTREL Q+AEQF+A+G+G+ LR V+VGG+D+++QA +
Sbjct: 114 AIPVIQQLLDNPQPFFACVMSPTRELCVQIAEQFEAIGAGIGLRTAVLVGGLDMVSQAIA 173
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L PHVVI TPGR+ L + KFL+ DEADR+L + FE+++ ++ +P
Sbjct: 174 LSKNPHVVIGTPGRMADHLANTKGFH--LKKLKFLIFDEADRLLSMDFEKQINLILTQIP 231
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K+R T LFSATMTS +Q L S N E +KTV+TL Q YIFIP+ K+ YL++
Sbjct: 232 KSRNTYLFSATMTSKVQKLQRASLNDPVKIEVSSKYKTVDTLVQNYIFIPEKHKETYLVY 291
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L++ + IIF +TC L+L+L L+ +AV ++ +Q+QRLSAL++FK+ +
Sbjct: 292 LLTQFAG---QKMIIFTTTCNQSMKLALILRNLNFKAVNINGQLTQTQRLSALNKFKANE 348
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ATDVASRGLDIP VD V+N+DIP++ +DYVHRVGRTARAG+ G A++FVTQ DV+
Sbjct: 349 RNILIATDVASRGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFVTQYDVE 408
Query: 415 LIHEIEAVVGKQLEEF---ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
+IE ++ K+L+E+ + K +L+D V +A R+A FE K +E K K
Sbjct: 409 TFQKIEQLIDKKLDEYPGLDSKAALILTD--SVVEATRLAV-------FEMKNREGKHGK 459
>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 474
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 204/478 (42%), Positives = 300/478 (62%), Gaps = 11/478 (2%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTT--QLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTC 75
K + S PQ E E +++T+ LE+ D T +T +F LG+ + + C
Sbjct: 5 KRRKLSHTPPQGEAEDGFSDSETSPASLEETPGNDEKIEAT-TTKSFKDLGIIDSLCEAC 63
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135
LG + PT +Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P + LV+
Sbjct: 64 DSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLA 123
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELAYQ+++QF+ALGS + +RC V+VGGMD+++QA +L +PH+++ATPGR+ LE
Sbjct: 124 PTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLEN 183
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
K+LV+DEADR+LD+ F L + + LPK R+T LFSATM+S +++L
Sbjct: 184 TKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQR 241
Query: 256 LS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
S +N + ++TV TL Q + IP KD+YL+++L++ +S IIF T
Sbjct: 242 ASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPG---QSVIIFTRTV 298
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
L++LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD
Sbjct: 299 NETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVD 358
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
LVLNYD+P + Y+HRVGRTARAG+ G A S VTQ DV++ IEA +GK+L+E++ ++
Sbjct: 359 LVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEK 418
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
+EV+ RV +A+R A + M + E + K+ + + + KG+ + R E ++ G
Sbjct: 419 EEVMVLSDRVGEAQRHAITE-MKELHENRGKKGATLRNRRIG-KGAKRSRDEMDREEG 474
>gi|388578792|gb|EIM19128.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 438
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 278/439 (63%), Gaps = 13/439 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V+F L L + V+ C+ LG ++PT +Q IP L+ +D++GLAQTGSGKTAAFALP++
Sbjct: 4 VSFKDLNLIDDLVKNCERLGYKQPTEIQQQSIPYSLQSRDIIGLAQTGSGKTAAFALPVI 63
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L ++P V+ PTRELAYQ++EQF+ALGS + LR +VGGMD++TQ+ +L +P
Sbjct: 64 QLLYDNPAPYFCCVLAPTRELAYQISEQFEALGSNIGLRTATIVGGMDMMTQSIALSKKP 123
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+++ATPGR+ LE KFLV+DEADR+LD+ F + + + LPK R T
Sbjct: 124 HIIVATPGRLHDHLENTKGFS--LRNIKFLVMDEADRLLDMDFGPIIDKLLKILPKERTT 181
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
+LFSATMT+ + L S + E + ++TV TL Q Y+F P +KD YL+++ +++
Sbjct: 182 MLFSATMTTKVAKLQRASLSNPVKVEVSDKYQTVSTLLQHYLFFPFKMKDSYLVYLANEV 241
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
S IIF T +S++L L A+ LH SQS RL AL++FK+G IL+
Sbjct: 242 AG---HSMIIFTRTVVDAQRISIILRNLGFPAIPLHGQLSQSSRLGALNKFKAGGRNILV 298
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP+VD V+NYD P +DY+HRVGRTARAGR G A++ VTQ DV+L+ I
Sbjct: 299 ATDVASRGLDIPSVDYVVNYDTPSNSKDYIHRVGRTARAGRSGKAITLVTQYDVELLQRI 358
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE-KAKERKKQKLKMLAEK 478
E + ++EEF +Q V + RV +A R+A ++L + ++ K K + + M +
Sbjct: 359 EKAINVKMEEFPHDKQAVPLLVERVNEASRIAAVELRESQQKKRKGKHSSRDDMDMDEDV 418
Query: 479 GSL-------KKRSEKRKK 490
+L K RS+K+K+
Sbjct: 419 ANLPKTVSGNKNRSKKQKR 437
>gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii]
Length = 446
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 188/406 (46%), Positives = 273/406 (67%), Gaps = 5/406 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ + LG + P+ +Q IP +L G+DV+GLAQTGSGKT AF+LPIL
Sbjct: 19 FEKLGICTQLAEAAAGLGWKAPSHIQEQAIPHLLAGQDVIGLAQTGSGKTGAFSLPILQA 78
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L + P AL+++PTRELA Q+AEQ +ALGSG+ ++ V+VGG+D++ QA +L RPHV
Sbjct: 79 LMDKPQEHFALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAKRPHV 138
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR+ L + K LVLDEAD++LD+ FE+E+ + + +P+ R+T L
Sbjct: 139 LVGTPGRVVDHLSNTKGFS--LKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRERRTQL 196
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATMT+ +Q L +K E + TV+TL+QQY+FIP KD YL +V++++
Sbjct: 197 FSATMTNKVQKLQRACLDKPVKIEVAHKYSTVDTLRQQYVFIPAKYKDCYLAYVINELSG 256
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+ +IF TC S ++LLL L AV +H SQ +RL AL++FKSG+ IL+AT
Sbjct: 257 ---STFMIFTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNILVAT 313
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLDIP+VD+V+N+D+P+ +DYVHRVGRTARAGR G +V+ VTQ DV+L +IE
Sbjct: 314 DVASRGLDIPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQYDVELFQKIEH 373
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
+ G ++E+F+ + +EVL + RV A+R+ATM++ + +K K +
Sbjct: 374 LTGVKMEQFQAEREEVLLLLERVSDAQRLATMQMKEADAGKKGKRK 419
>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
Length = 470
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 191/457 (41%), Positives = 291/457 (63%), Gaps = 19/457 (4%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P++ + +F+ LG+ E + C++L PT +Q IP L+G+DV+GLAQTGSGK
Sbjct: 16 PDAEEHEKASSFSDLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGK 75
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
TAAF++PIL L +DP + A ++ PTREL+YQ+++Q +ALG+ + +RC +VGGMD++T
Sbjct: 76 TAAFSIPILQGLWDDPRPLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMT 135
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q+ +L RPHV++ATPGR++ LE ++LV+DEADR+LD+ F + +
Sbjct: 136 QSIALSKRPHVIVATPGRLQDHLENTKGFS--LRSLRYLVMDEADRLLDLDFGPIIDKLL 193
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
Q +PK R+T+LFSATMT+ + L S E + TV TL+Q Y+F+P KD
Sbjct: 194 QNIPKERRTMLFSATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYLFMPFAHKDT 253
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL+H+ + E +G S I+F T L++LL L A+ LH SQ+ RL AL++F
Sbjct: 254 YLVHLAN--EQVG-HSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKF 310
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G +I++ TDVA+RGLDIP VDLV+N+DIP + +DY+HRVGRTARAGR G +V+ VTQ
Sbjct: 311 KAGGRSIMVCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQ 370
Query: 411 NDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDIT-RVYKARRVATMKLMDDGFEE---KAK 465
DV+L+ IEA +GK+L+EF +++++ ++ RV +A+R A +L + GF +
Sbjct: 371 YDVELLQRIEAAIGKRLDEFPGAGDRDMIMLLSERVGEAQRAAIRELQEKGFGNAGGAGR 430
Query: 466 ERKKQKLKML---------AEKGSLKKRSEKRKKSGE 493
++KQ + + E G+ + R+ K G+
Sbjct: 431 RKRKQAVGLEDERDRDDDTVEAGAYRSRATKAGGDGK 467
>gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 466
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/410 (46%), Positives = 268/410 (65%), Gaps = 7/410 (1%)
Query: 61 TFAGLGL-AEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
TF LG+ AE A K +G R PTP+Q +P+ L +DV+GLAQTGSGKT AFALPIL
Sbjct: 18 TFEDLGVCAELADACAKIMGWRAPTPIQCAAVPEALRERDVIGLAQTGSGKTGAFALPIL 77
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L + P G +L+++PTRELA Q+AEQ + LG+G+ R +VGG+D+ TQA L RP
Sbjct: 78 QSLLDAPQGFHSLILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQAIKLGKRP 137
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HV++ TPGR+ LE K LVLDEADR+L++ FEEE+ + + +P +R+T
Sbjct: 138 HVIVGTPGRVVDHLENTKGFS--LRALKVLVLDEADRLLNLDFEEEIDKILRVIPSDRRT 195
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT+ + L E + TVE+LKQ Y+FIP KD Y ++ +
Sbjct: 196 QLFSATMTNKVAKLQRACLRDPVKVEVSAKYSTVESLKQHYLFIPAKHKDCYATYLFN-- 253
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ + I+F TC + L+L+ L AV +H SQ +R++AL +FKSG+ IL+
Sbjct: 254 -ELSASTLIVFARTCDATRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKSGERNILI 312
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP+VD+V+NYD+P+ +DYVHRVGRTARAGR GLAV+ VTQ DV+L +I
Sbjct: 313 ATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKI 372
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
E ++ K+L+++ +E+ V+ RV +A+R+A ++ M D E K K K+
Sbjct: 373 ERLINKKLDKYPLEEEAVMLLYDRVNEAQRIA-IQQMRDQDERKGKGAKR 421
>gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
Length = 450
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/409 (43%), Positives = 268/409 (65%), Gaps = 5/409 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
F G+G+ E + +LG + P+ +Q IP+ L+GKDV+GLAQTGSGKT AFALPIL
Sbjct: 16 AFLGIGVCEELAEAAADLGWKAPSEIQAQSIPQALQGKDVIGLAQTGSGKTGAFALPILQ 75
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P ALV++PTRELA Q+AEQF+ALG+G+ ++ V+VGG+D++ Q+ L RPH
Sbjct: 76 ELLDKPQAFFALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKRPH 135
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VV+ TPGR+ L + + L LDEADR+L++ FE+E+ + + +P++R+T
Sbjct: 136 VVVGTPGRVVDHLTNTKGF--TLKQLQVLCLDEADRLLNLDFEQEIDQILKVVPRDRRTQ 193
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMTS + L E + TV++LKQ Y+FIP KD Y+ ++ +++
Sbjct: 194 LFSATMTSKVAKLQRACLRNPVKVEVSAKYSTVDSLKQNYLFIPAKHKDCYVNYLFNELS 253
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ ++F TC L+L+ L A+ +H SQ +R+ AL++FK+G+ IL+A
Sbjct: 254 S---STMMVFTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRIGALNKFKAGERNILVA 310
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+NYD+P+ +DYVHRVGRTARAGR GLA++ VTQ DV+L +IE
Sbjct: 311 TDVASRGLDIPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQYDVELYQKIE 370
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
++ K+L+ ++ E+ VL RV +A+R+A ++ + + K+R +
Sbjct: 371 RLIQKKLDAYDAPEEAVLLMNERVNEAQRIAQQQMREADAKGGGKKRNR 419
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 189/455 (41%), Positives = 285/455 (62%), Gaps = 10/455 (2%)
Query: 16 KPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTC 75
K + T +PE + E ES +++ + ++ S F LG+ + + C
Sbjct: 5 KKRKITEKQPETNSDSEAESVSSRGSAKDETQTSGEEPAPAKS---FKELGIIDQLCEAC 61
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135
+ +G + PTP+Q+ IP LEG+DV+GLA+TGSGKTAAFALP+L L E P + LV+
Sbjct: 62 ENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLA 121
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELAYQ+++ F+ LGS + +RC V+VGGMD++ Q+ +L +PH+++ATPGR+ LE
Sbjct: 122 PTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLEN 181
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
K+L +DEADR+LD+ F E L + + LP+ R T LFSATM++ +++L
Sbjct: 182 TKGFS--LRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQR 239
Query: 256 LSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
S + ++TV TL+ YI IP K++YL+++L++ +SAIIF +T
Sbjct: 240 ASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAG---QSAIIFTTTVH 296
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
++ +L L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD+
Sbjct: 297 ETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDV 356
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435
V N+D+P + Y+HRVGRTARAG+ G+A+SFVTQ DV++ IE + K+L E++ ++
Sbjct: 357 VFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKKLPEYQVEKD 416
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
EV+ RV +A R AT+++ F+EK R K+
Sbjct: 417 EVMVMSERVAEASRQATIEM--KSFDEKKGARGKK 449
>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
Silveira]
Length = 474
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 204/478 (42%), Positives = 299/478 (62%), Gaps = 11/478 (2%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTT--QLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTC 75
K + S PQ E E +++T+ LE+ D T +T +F LG+ + + C
Sbjct: 5 KRRKLSHTPPQGEAEDGFSDSETSPASLEETPGNDEKIEAT-TTKSFKDLGIIDSLCEAC 63
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135
LG + PT +Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P + LV+
Sbjct: 64 DSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLA 123
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELAYQ+++QF+ALGS + +RC V+VGGMD+++QA +L +PH+++ATPGR+ LE
Sbjct: 124 PTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLEN 183
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
K+LV+DEADR+LD+ F L + + LPK R+T LFSATM+S +++L
Sbjct: 184 TKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQR 241
Query: 256 LS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
S +N + ++TV TL Q + IP KD+YL+++L++ +S I+F T
Sbjct: 242 ASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPG---QSVIVFTRTV 298
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
L+ LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD
Sbjct: 299 NETQRLANLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVD 358
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
LVLNYD+P + Y+HRVGRTARAG+ G A S VTQ DV++ IEA +GK+L+E++ ++
Sbjct: 359 LVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEK 418
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
+EV+ RV +A+R A + M + E + K+ + + L KG+ + R E ++ G
Sbjct: 419 EEVMVLSDRVGEAQRHAITE-MKELHENRGKKGATLRNRRLG-KGAKRSRDEMDREEG 474
>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
Length = 454
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 192/411 (46%), Positives = 265/411 (64%), Gaps = 12/411 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL- 119
TFA LG+ V+ C +G + PT +Q IP L+GKD++ LAQTGSGKT AFALPIL
Sbjct: 25 TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84
Query: 120 ----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+R AE + A V++PTRELA Q+AEQF+ALGS + LRC V+VGG+D + Q S+
Sbjct: 85 ELLSNRQAEQSF--FACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSI 142
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPH+V+ TPGR+ L E + K+LVLDEAD++L+V FE+ L + + +PK
Sbjct: 143 GKRPHIVVGTPGRLLDHLTETKGFS--LKKIKYLVLDEADKLLNVEFEKSLDDILREIPK 200
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+R+T LFSATMT + L EA + TV++LKQ++ F+P + KD YL+HV
Sbjct: 201 DRRTFLFSATMTKKVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFVPADDKDCYLLHV 260
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L++ +D I +IFV TC S LL+L+L L +A+++ SQ +RL AL+RFK+
Sbjct: 261 LNERQDSMI---MIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDC 317
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAGR G AVS V Q +
Sbjct: 318 NILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQW 377
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
IE ++GKQ+++ + EV+ + A+R+A KL D G +K ++
Sbjct: 378 FVLIEKLLGKQIDQRKVDRDEVMILKGPISDAKRIALTKLKDSGGHKKRRK 428
>gi|343428869|emb|CBQ72414.1| probable DEAD box protein (putative RNA helicase) [Sporisorium
reilianum SRZ2]
Length = 568
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 188/400 (47%), Positives = 260/400 (65%), Gaps = 7/400 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V+F LG+ V+ C +G + PTP+Q IP+ L+ +DV+GLAQTGSGKTAAF +PIL
Sbjct: 121 VSFQDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPIL 180
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L ++P A V+ PTRELAYQ+++Q +ALGS + +R +VGGMD+++Q+ +L RP
Sbjct: 181 QALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRP 240
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HV++ATPGR++ LE ++LV+DEADR+LD+ F + + Q +P+ R+T
Sbjct: 241 HVIVATPGRLQDHLENTKGFS--LRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRT 298
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
+LFSATMT+ + L S E + TV TLKQ Y+F+P KD YL+H+ +
Sbjct: 299 MLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLAN-- 356
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E G S I+F T LS+LL L A+ LH SQ RL AL++FK+G +IL+
Sbjct: 357 EQAG-HSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 415
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP VDLV+NYDIP +DY+HRVGRTARAGR G +V+ VTQ DV+L+ I
Sbjct: 416 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 475
Query: 420 EAVVGKQLEEFEC--KEQEVLSDITRVYKARRVATMKLMD 457
EAV+G ++ EF ++ V+ RV +A R A +L D
Sbjct: 476 EAVIGLKMTEFPGGNDKEAVMLLSERVAEAHRAAVRELKD 515
>gi|452819711|gb|EME26765.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 414
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 185/403 (45%), Positives = 258/403 (64%), Gaps = 5/403 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D +F LGL +W V+TCK L + +PTP Q CIP+ L GKD++G ++TG+GKT +F L
Sbjct: 10 DMVSSFEELGLGQWIVETCKALNIMKPTPCQVACIPQTLNGKDIIGSSETGTGKTMSFVL 69
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PI+ +L+ DP GV A+V+TPTRELA+Q+ +QFKA+G+ + +R VVVGG++ + QA L
Sbjct: 70 PIVDKLSVDPCGVFAIVLTPTRELAFQIYDQFKAIGNPMSIRVAVVVGGLESIRQATELE 129
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
NRPHVV+ATPGR+ L + + +FLVLDEADR+L+ GF L + LP
Sbjct: 130 NRPHVVVATPGRLADLFTIEDSVERFHLHSIRFLVLDEADRLLEDGFASSLSTILDVLPV 189
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG-FKTVETLKQQYIFIPKNVKDVYLMH 294
NRQTL++SATM ++ L + ++ + Y + + V L+Q Y+ IP +K YL +
Sbjct: 190 NRQTLVYSATMNDKMEQLSKTCRSECFIYTSSSSRYSQVRELEQFYLLIPFQMKTCYLAY 249
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L + S IIF +C+ C L L LE L LHS Q +RL A+H + G
Sbjct: 250 LL--LYGFPSFSCIIFTGSCKRCQHLFLTLEYLGLNVGVLHSKMKQMERLKAIHNIQRGT 307
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ TDVASRGLDIP V+LV+NY IP P Y+HRVGRTARAG G A+S V+Q +V+
Sbjct: 308 IRILICTDVASRGLDIPQVELVVNYHIPSKPSTYIHRVGRTARAGNRGKAISLVSQFEVE 367
Query: 415 LIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLM 456
+ IE + ++L EF CKE+EVL +T V KA R A +K++
Sbjct: 368 IFRNIERRLERELVEFGHCKEKEVLKILTDVLKAERKAKLKML 410
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum
NZE10]
Length = 513
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 189/440 (42%), Positives = 275/440 (62%), Gaps = 16/440 (3%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPN-------STTTDSTVTFAGLGLAEWAVQTCKELGMRR 82
+P PE +++E P S + + +FA LG+ + C LG +
Sbjct: 46 KPSPERNKRAHSEVEGDVGPAAEEEEAMGASPSKEEDKSFAELGVIDQLCDACANLGFTK 105
Query: 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG---VLALVITPTRE 139
PT +Q IP LEGKD++GLA+TGSGKTAAFALPIL L P LV+ PTRE
Sbjct: 106 PTAIQKESIPIALEGKDIIGLAETGSGKTAAFALPILQALMAAPQHEQHKFGLVLAPTRE 165
Query: 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI 199
LAYQ+++QF+ALGS +++RC V+VGGMD++ QA +L PH+V+ATPGR+ LE
Sbjct: 166 LAYQISQQFEALGSLINVRCAVLVGGMDMVPQAIALNKNPHIVVATPGRLLDHLENTKGF 225
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-A 258
K+LV+DEADR+LD+ F L + Q LP R+T+LFSATM++ L L +
Sbjct: 226 S--MRSLKYLVMDEADRLLDLDFGPILDKILQVLPSKRRTMLFSATMSTKLNNLTRAALQ 283
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
N + ++TV+ L Q+YIFIP KD+YL+++L++ ++ I+F T
Sbjct: 284 NPVRVSISSSSYQTVKNLMQRYIFIPHKFKDIYLVYLLNEFAG---QTCIVFTRTINETQ 340
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
++ LL L + A+ LH +QS RL AL++F+ G IL+ATDVA+RGLDIP+VDLVLN
Sbjct: 341 RIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGSREILVATDVAARGLDIPSVDLVLN 400
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
+D+P + YVHRVGRTARAG+ G+A+S VTQ D+++ IE +GK+L+E+ + EV+
Sbjct: 401 FDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRIEKALGKKLDEYAAERDEVM 460
Query: 439 SDITRVYKARRVATMKLMDD 458
RV +A+R+A ++ ++
Sbjct: 461 VFAPRVAEAQRIAITEMKNE 480
>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 189/442 (42%), Positives = 281/442 (63%), Gaps = 14/442 (3%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T ++ TFA LG+ E V+ C+ LG + PT +Q IP LEGKD++ LAQTGSGKTAAF
Sbjct: 5 TEEAVKTFADLGICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGSGKTAAF 64
Query: 115 ALPILHRLAEDPYGVL----ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
ALP L L + + A V++PTRELA Q+AEQF+ALGS + LRC V+VGG+D+
Sbjct: 65 ALPTLQALLQASVTSVPVFYACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGL 124
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVV 229
Q +L RPH+V+ TPGR LL+ + RT K+L+LDEADR+L+ FE+ L +
Sbjct: 125 QTIALAKRPHIVVGTPGR---LLDHLSNTKGFSLRTLKYLILDEADRLLNEEFEKSLDEI 181
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ ++R+T LFSATMT ++ L E + VETL+QQ +F P K+
Sbjct: 182 LTVISRDRKTYLFSATMTKKVRKLQRACLRNPVKIEVASKYSVVETLRQQLLFCPAKYKE 241
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL+H L+ S ++F TC + H L+L+L L A+ ++ SQS+RL AL++
Sbjct: 242 CYLVHALTLKSGA---STMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNK 298
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+G+ IL+ TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR GLA+S V
Sbjct: 299 FKAGECNILICTDVASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVN 358
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE---KAKE 466
QN++ +IE ++G ++ + ++E++ + RV +A+R++ ++ + G ++ + E
Sbjct: 359 QNEIGWFKQIENLIGIRMSDIRPHQEEIMLLLERVTEAKRISQKQIKEPGGKKRKGRGDE 418
Query: 467 RKKQKLKMLAEKGSLKKRSEKR 488
+++ K +++K K+ KR
Sbjct: 419 DEEEIDKYISKKDGRFKKKNKR 440
>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
Length = 472
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 188/433 (43%), Positives = 279/433 (64%), Gaps = 8/433 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+P+ T + + +F LG+ + + C+ LG + PT +Q IP L+G+DV+GLA+TGSG
Sbjct: 36 EPSDTQSTTRKSFKDLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSG 95
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFALPIL L + P + LV+ PTRELAYQ++EQ +ALGS + +RC V+VGGMD++
Sbjct: 96 KTAAFALPILQALMDKPQSMFGLVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMV 155
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
+QA +L +PH+++ATPGR+ LE K+LV+DEADR+LD+ F L +
Sbjct: 156 SQAIALGKKPHIIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPILDKI 213
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ LPK R+T LFSATM+S +++L S +N + ++TV TL Q Y+FIP K
Sbjct: 214 LKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQNYLFIPHKYK 273
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D+Y +++L++ +S I+F T L++LL L A+ LH SQS RL AL
Sbjct: 274 DIYFVYLLNEFPG---QSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALG 330
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F+S IL+ATDVA+RGLDIP+VDLVLNYD+P + Y+HRVGRTARAG+ G A S V
Sbjct: 331 KFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLV 390
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR--VATMKLMDDGFEEKAKE 466
TQ D+++ IE +GK +E++ +++EV+ RV +A+R + MK + + +K
Sbjct: 391 TQFDIEIWQRIEGALGKTFDEYKTEKEEVMVLSDRVSEAQRHAITEMKELHENRGKKGAT 450
Query: 467 RKKQKLKMLAEKG 479
+ ++ A++G
Sbjct: 451 LRNRRTGNGAKRG 463
>gi|378727302|gb|EHY53761.1| ATP-dependent rRNA helicase RRP3 [Exophiala dermatitidis
NIH/UT8656]
Length = 480
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 192/432 (44%), Positives = 287/432 (66%), Gaps = 9/432 (2%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+S TF LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAF
Sbjct: 47 ANSPTTFKELGIIDSLCEACESLGYKAPTPIQAEAIPLALQGRDLIGLAETGSGKTAAFV 106
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL L + P + +L++ PTRELAYQ++E +ALGS + +RC V+VGGMD++TQA +L
Sbjct: 107 LPILQALMDKPQQLHSLILAPTRELAYQISEAVEALGSLIAVRCAVLVGGMDMITQAIAL 166
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+PHV++ATPGR+ LE + K+LV+DEADR+LD+ F L + + LP+
Sbjct: 167 GKKPHVIVATPGRLLDHLENTKGFS--LRQLKYLVMDEADRLLDLDFGPILDKILKILPR 224
Query: 236 -NRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
R+T LFSATM+S +++L S +N + + ++TV TL Q Y+FIP KD+YL+
Sbjct: 225 EGRKTYLFSATMSSKVESLQRASLSNPLRVAVSQDKYQTVSTLIQSYLFIPHKHKDLYLI 284
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
H+L+ E G + IIF T +S+LL L A+ +H SQ RL+AL++F++
Sbjct: 285 HILN--EHAG-HTGIIFTRTVNEAQRVSILLRTLGFSAIPIHGQLSQQARLAALNKFRAK 341
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+A+DVA+RGLDIP+VDLV+N+D+P+ + Y+HRVGRTARAG+ GLA+SFVTQ DV
Sbjct: 342 SRNLLVASDVAARGLDIPSVDLVINFDLPQDSKTYIHRVGRTARAGKSGLAISFVTQYDV 401
Query: 414 DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
+L IE +GK+L+E++ ++EV+ RV A+R A ++ M + E + K+ + +
Sbjct: 402 ELWLRIEGALGKKLDEYKTVKEEVMVLAERVGDAQRAAALE-MKELHENRGKKGATLRHR 460
Query: 474 MLAEKGSLKKRS 485
A KG++ KR
Sbjct: 461 R-AGKGAVGKRG 471
>gi|350630756|gb|EHA19128.1| hypothetical protein ASPNIDRAFT_54204 [Aspergillus niger ATCC 1015]
Length = 467
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 188/411 (45%), Positives = 270/411 (65%), Gaps = 8/411 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ E + C+ +G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL
Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ 108
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P LV+ PTRELAYQ+++ F++LG+ + +R V+VGGMD+++Q+ SL +PH
Sbjct: 109 ALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH 168
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+T
Sbjct: 169 IIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTF 226
Query: 241 LFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM+S +++L S +N + ++TV TL Q Y+FIP+ KD+YL+++L++
Sbjct: 227 LFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEF 286
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+S IIF T L+ LL L A+ LH SQS RL AL +F++ IL+
Sbjct: 287 AG---QSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+VLN+D+P YVHRVGRTARAG+ GLA+SFV Q DV++ I
Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
E +GK+L+E++C + EV+ V +A+R A M + D + EK R K+
Sbjct: 404 EGALGKKLKEYDCPKDEVMVLGENVAEAQRQAIMDMKD--YNEKKGSRGKK 452
>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 442
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 189/410 (46%), Positives = 272/410 (66%), Gaps = 11/410 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + V C LG + PT +Q IP LEGKD++GLAQTGSGKT AFALPIL
Sbjct: 10 TFKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQ 69
Query: 121 RLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L E A V++PTRELA Q+AEQF+ALGS + ++C V+VGG+D++ Q+ +L
Sbjct: 70 SLLEASEKSVQAFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALG 129
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPH+V+ATPGR L++ + RT K+LVLDEADR+L+ FE+ L + + +P+
Sbjct: 130 KRPHIVVATPGR---LVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIPR 186
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R+T LFSATMT ++ L EA + TV+TLKQ+Y FIP KD YL+++
Sbjct: 187 ERRTFLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQEYRFIPAKYKDCYLVYI 246
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+ E G ++++F TC + L+L+L L A+ ++ +QS+RL AL++FK+G+
Sbjct: 247 LT--EKSG-STSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGEC 303
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q +V+
Sbjct: 304 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEW 363
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
+IE ++GK+L E+ +E+EVL + + +A+R++ + + G K K
Sbjct: 364 FIQIEKLIGKKLPEYPAREEEVLLLLEPITEAKRISQTSIKNSGDARKRK 413
>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
dendrobatidis JAM81]
Length = 445
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 188/406 (46%), Positives = 261/406 (64%), Gaps = 7/406 (1%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ ++ C LG ++P+ +Q IP L G+D++GLAQTGSGKTAAFALPIL L +
Sbjct: 17 GIIPELIEACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTLFAN 76
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185
P + A VI PTRELA+Q++EQF+ALGS + +RC V+VGGMD+++Q+ +L +PHV+I T
Sbjct: 77 PQHLYACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVIICT 136
Query: 186 PGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245
PGR+ LE K+LV+DEADR+LD+ F E+ V + +P+ R T LFSAT
Sbjct: 137 PGRLVDHLENTKGFN--LKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLFSAT 194
Query: 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
MTS ++ L S E + TV+TL Q Y F P K+ YL ++L+++ +
Sbjct: 195 MTSKVEKLQRASLVNPVKVEVATKYSTVDTLLQYYTFFPYKQKECYLTYLLNELSG---Q 251
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
+ I+F TC S L+L+L L EAV LH +Q +RL AL +FKSG IL+ATDVAS
Sbjct: 252 TCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVAS 311
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP VD+V+NYD+P+ +DY+HRVGRTARAGR G +++ VTQ DV+ IE + K
Sbjct: 312 RGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRIEHAIQK 371
Query: 426 QLEE--FECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+L E F + VL RV +A R A M+L D+ + K +R +
Sbjct: 372 KLTEYPFGHDKSAVLMLQERVSEAVRFAHMQLKDENLKHKGSKRGR 417
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 188/411 (45%), Positives = 270/411 (65%), Gaps = 8/411 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ E + C+ +G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL
Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQ 108
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P LV+ PTRELAYQ+++ F++LG+ + +R V+VGGMD+++Q+ SL +PH
Sbjct: 109 ALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH 168
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+T
Sbjct: 169 IIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTF 226
Query: 241 LFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM+S +++L S +N + ++TV TL Q Y+FIP+ KD+YL+++L++
Sbjct: 227 LFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEF 286
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+S IIF T L+ LL L A+ LH SQS RL AL +F++ IL+
Sbjct: 287 AG---QSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+VLN+D+P YVHRVGRTARAG+ GLA+SFV Q DV++ I
Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
E +GK+L+E++C + EV+ V +A+R A M + D + EK R K+
Sbjct: 404 EGALGKKLKEYDCPKDEVMVLGENVAEAQRQAIMDMKD--YNEKKGSRGKK 452
>gi|225468923|ref|XP_002273212.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Vitis
vinifera]
Length = 470
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 199/434 (45%), Positives = 290/434 (66%), Gaps = 12/434 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ E V+ C+ LG + P+ +Q IP LEGKD++GLAQTGSGKT AFALPIL
Sbjct: 44 SFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 103
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + A V++PTRELA Q+AEQF+ALGSG+ L+C V+VGG+D QA +L RPH
Sbjct: 104 ALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPH 163
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
+V+ TPGR L++ + RT K+LVLDEADR+L+ FE+ + + +P+ R+T
Sbjct: 164 IVVGTPGR---LMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRERKT 220
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT ++ L E + TV+TLKQQY F+P K+ YL+++L+++
Sbjct: 221 YLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVYILTEL 280
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+ ++F TC + LL+LLL L A+ + SQ++RL AL++FK+G+ IL+
Sbjct: 281 SG---STTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNILI 337
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+A+S V Q +++ +I
Sbjct: 338 CTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQI 397
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK---ERKKQKLKMLA 476
E ++GK+L EF +E+EVL + RV +A+R++ MK+ + G ++K + E +++ + LA
Sbjct: 398 EKLIGKKLPEFPAQEEEVLLLLERVTEAKRISQMKVKETGGKKKRRGGDEGEEEIDRYLA 457
Query: 477 EKGSLKKRSEKRKK 490
K K S+K KK
Sbjct: 458 SKNG--KSSKKLKK 469
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 189/415 (45%), Positives = 267/415 (64%), Gaps = 10/415 (2%)
Query: 46 FTNPDPNSTTTDS-----TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDV 100
F +P P + D+ TFA LG++ + C +G ++P+ +Q IP LEGKD+
Sbjct: 19 FRSPSPAPSNPDAPEASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDI 78
Query: 101 LGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCE 160
+GLAQTGSGKTAAF+LPIL L E+P ALV+ PTRELAYQ+++Q +LGSG+ +R
Sbjct: 79 IGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTA 138
Query: 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220
V+VGGMD+++Q+ +L RPHV++ATPGR+ LE K+LV+DEADR+LD+
Sbjct: 139 VLVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFS--LKSLKYLVMDEADRLLDL 196
Query: 221 GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQY 280
F + V + +PK R T LFSATMT+ + L S NK E + TV TL Q Y
Sbjct: 197 DFGPIIDKVLKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHY 256
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
+ +P KD YL+++ +++ S IIF T LS++L L A+ LH +Q
Sbjct: 257 LLLPLKNKDAYLLYLANELSS---SSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQ 313
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
S RL++L++FKSG +IL+ATDVASRGLDIP VDLV+NYD+P +DYVHRVGRTARAGR
Sbjct: 314 SLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGR 373
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
G +++ VTQ DV+++ IE+ +GK++ F+ ++ V V KA R A +++
Sbjct: 374 SGKSITLVTQYDVEILQRIESHIGKKMTSFDVDKEAVALLTDTVAKANREAALEM 428
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/444 (43%), Positives = 287/444 (64%), Gaps = 26/444 (5%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 55 TKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPI 114
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L + P + LV+ PTRELAYQ+++ F+ALGS + ++C V+VGGMD++ QA +L +
Sbjct: 115 LQSLLDKPQPLFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKK 174
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 175 PHIIVATPGRLLDHLENTKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 232
Query: 239 TLLFSATMTSDLQTL----------LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
T LFSAT++S +++L + +S+NK ++TV TL Q YIFIP K
Sbjct: 233 TYLFSATISSKVESLQRASLKDPLRVSISSNK---------YQTVSTLIQNYIFIPLVHK 283
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++L++ +SAIIF T +++LL L A+ LH SQS RL AL+
Sbjct: 284 DTYLIYLLNEFAG---QSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALN 340
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F++G IL+ATDVA+RGLDIP+VD+VLNYD+P+ + Y+HRVGRTARAG+ G A+SFV
Sbjct: 341 KFRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFV 400
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV++ IEA +GK+ EE++ + EV+ RV +A+R A + M + E++ K+
Sbjct: 401 TQYDVEIWMRIEAALGKKQEEYQTVKDEVMVFKPRVEEAQRHARNE-MKNLHEDRGKKGA 459
Query: 469 KQKLKMLAEKGSLKKRSEKRKKSG 492
K + A G+ + R E ++ G
Sbjct: 460 VLKGRRPAN-GAKRGRDEMDREEG 482
>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654514|sp|Q9P6N8.1|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe]
Length = 465
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 186/422 (44%), Positives = 272/422 (64%), Gaps = 7/422 (1%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+S ++ TF LG+ + + C++LG + PTP+Q IP +L +DV+GLAQTGSGKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AAFALP++ L +P A+V+ PTRELAYQ++EQF+A+G + +R V+VGGMD++TQ
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
A +L +PHV++ TPGR+ LE K+L++DEADR+LD+ F + + +
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLENTKGFS--LKNLKYLIMDEADRLLDMDFGPIIDKILK 215
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
+P R+TLLFSATMTS ++ L S ++ F TV+TL Q+Y+F P KD Y
Sbjct: 216 IIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTY 275
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+++++++ S IIF T L++LL L A+ LH SQS RL AL++FK
Sbjct: 276 LVYLVNELAG---NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFK 332
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG + L+ATDVA+RGLDIP VD+V+NYDIP + Y+HRVGRTARAGR G +++ VTQ
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQY 392
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR--VATMKLMDDGFEEKAKERKK 469
D++ IEA +GK+++E+E ++ V RV +A+R + MK + D + K K K
Sbjct: 393 DLEPFLRIEATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDRRKSKGKLHTK 452
Query: 470 QK 471
+K
Sbjct: 453 RK 454
>gi|326504546|dbj|BAJ91105.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508600|dbj|BAJ95822.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 456
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 269/418 (64%), Gaps = 9/418 (2%)
Query: 49 PDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
P+P + + TFA LG+ V+ C +G ++PT +Q IP L+G+DV+GL QTGS
Sbjct: 19 PEPAAEAS----TFAELGICRELVEACDAMGWKQPTKIQAGAIPHALQGRDVIGLGQTGS 74
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKT AFALPI+ L E A V++PTRELA Q+AEQF+ALGSG+ L C V+VGG+D
Sbjct: 75 GKTGAFALPIIQALLEHRQPFFACVMSPTRELAIQIAEQFEALGSGIGLVCSVLVGGVDR 134
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ Q S+ RPH+V+ TPGR+ L++ ++ K+LVLDEAD++L++ F+E L
Sbjct: 135 MQQVLSIAKRPHIVVGTPGRLLDHLKDTKGFS--LTKVKYLVLDEADKLLNLEFKESLDD 192
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +PK R+T LFSATMT + L E + TV+TLKQ++ F+P + K
Sbjct: 193 ILKEIPKERRTYLFSATMTKKVSKLQRACLRNPVKVEVSSKYSTVDTLKQEWYFVPADYK 252
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+HVL++++ I +IFV TC S LL+L L L +A+++ SQ +RL AL+
Sbjct: 253 DCYLVHVLNELQGSMI---MIFVRTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALN 309
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+ IL+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAG+ G AVSFV
Sbjct: 310 KFKAKDFNILICTDVASRGLDIQGVDVVMNYDIPMNSKDYVHRVGRTARAGQSGYAVSFV 369
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
Q + + IE ++G+Q+ + + E+L + ++R+A KL +DG +K ++
Sbjct: 370 NQYEAEWFKLIEQLLGRQIPDRKVDMDEILILREHISDSKRIALTKLKEDGGHKKRRK 427
>gi|395333626|gb|EJF66003.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 461
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 189/442 (42%), Positives = 278/442 (62%), Gaps = 15/442 (3%)
Query: 29 PEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
P PE S + ++P+P + + TF LGL + ++ +++ + PT +Q
Sbjct: 2 PSPEEASTS---------SSPEPQAIAA-APPTFKSLGLIDPLLEALEQMKYKAPTDIQA 51
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
+P L+G+D++G+A TGSGKTAAFALPIL +L EDP G+ A VI PTRELA+Q+ +QF
Sbjct: 52 EALPHALQGRDIIGVASTGSGKTAAFALPILQKLWEDPKGLFACVIAPTRELAFQITQQF 111
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+++GS + +RC ++GG+D+ +Q +L +PHV++ATPGR+ LEE KF
Sbjct: 112 ESIGSAMGVRCATIIGGVDIQSQKIALAKKPHVIVATPGRLLEHLEETKGFS--LRSLKF 169
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE 268
LVLDEADR+LD+ F L + + +PK R T LFSATMT+ + L S + E
Sbjct: 170 LVLDEADRLLDMDFGPILDKILKLIPKERTTYLFSATMTTKVAKLQRASLSNPVRVEVNS 229
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
+ TV TL Q Y+ +P KDV+L+++ + + S IIF T LS++L L
Sbjct: 230 KYSTVSTLLQYYLLMPLPQKDVHLIYLANTLAQ---NSMIIFTRTVHDAQRLSIMLRSLG 286
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
A+ LH SQS RL AL +FK+G +IL+ATDVASRGLDIP+VD+V+NYDIP + +DY
Sbjct: 287 FPAIPLHGQLSQSARLGALGKFKAGGRSILVATDVASRGLDIPSVDIVINYDIPTHSKDY 346
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+HRVGRTARAGR G +++ VTQ DV+L+ IE V+ K++E + + EV RV +A
Sbjct: 347 IHRVGRTARAGRSGKSITLVTQYDVELVLRIEQVIEKKMELWPVDKDEVALLRERVDEAG 406
Query: 449 RVATMKLMDDGFEEKAKERKKQ 470
R+A +L + G + +++K+
Sbjct: 407 RLAATELKEQGIKGGHGKKRKR 428
>gi|406603210|emb|CCH45247.1| ATP-dependent rRNA helicase RRP3 [Wickerhamomyces ciferrii]
Length = 488
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 270/429 (62%), Gaps = 17/429 (3%)
Query: 13 LFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAV 72
L K ++++ +PE EPES++ + ++ + + P NS F L L +
Sbjct: 35 LLDKKNNESKESKVKEPESEPESQDEEESKETEESKPTINS--------FKDLKLIPELL 86
Query: 73 QTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVL 130
+ C+ L +PTP+Q IP +EG+D++GLAQTGSGKTAAFA+PIL L A+ PY
Sbjct: 87 EACQALKFDKPTPIQAEAIPHGIEGRDLIGLAQTGSGKTAAFAIPILQALWYAQTPY--F 144
Query: 131 ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK 190
A V+ PTRELAYQ+ + F ALGSG+ LR +VGGMD++ QA+ LM +PHV++ATPGR+
Sbjct: 145 ATVLAPTRELAYQIKDTFDALGSGMGLRSVCIVGGMDMMEQARDLMRKPHVIVATPGRLM 204
Query: 191 VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDL 250
LE KFLV+DEADR+LD+ F L +F+ +P+ R T LFSATMT+ +
Sbjct: 205 DHLEHLKGFS--LRALKFLVMDEADRLLDMEFGPVLDKIFKVIPRERTTYLFSATMTNKI 262
Query: 251 QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIF 310
L S + + TV+TL Q + +P K+ YL+++L++ E +S IIF
Sbjct: 263 DKLQRASLTNPVKVSVSDRYSTVDTLIQSMMIVPDGQKNTYLIYLLNQFEG---KSIIIF 319
Query: 311 VSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370
TC +LL L AV LH +QSQRLSAL+RFKSG+ IL+ATDVA+RGLDI
Sbjct: 320 TRTCAHSQRTALLSRILGFSAVPLHGQLTQSQRLSALNRFKSGKTNILVATDVAARGLDI 379
Query: 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430
P+VD+V+NYDIP + Y+HRVGRTARAGR G +VS VTQ D++L+ IEA++ +L +
Sbjct: 380 PSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELLIRIEAIINMKLPKE 439
Query: 431 ECKEQEVLS 439
E+LS
Sbjct: 440 SVNRDEILS 448
>gi|358373394|dbj|GAA89992.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 471
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 185/400 (46%), Positives = 265/400 (66%), Gaps = 6/400 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TF LG+ E + C+ +G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 51 TKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPI 110
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P L++ PTRELAYQ+++ F++LG+ L +R V+VGGMD+++Q+ SL +
Sbjct: 111 LQALMEKPQPFFGLILAPTRELAYQISKSFESLGASLGVRSCVIVGGMDMVSQSISLGKK 170
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 171 PHIIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERR 228
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATM+S +++L S +N + ++TV TL Q Y+FIP+ KD+YL+++L+
Sbjct: 229 TFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLN 288
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +S IIF T L+ LL L A+ LH SQS RL AL +F++ I
Sbjct: 289 EFAG---QSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNI 345
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP+VD+VLN+D+P YVHRVGRTARAG+ GLA+SFV Q DV++
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWL 405
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE +GK+L+E++C + EV+ V +A+R A M + D
Sbjct: 406 RIEGALGKKLKEYDCPKDEVMVLGENVAEAQRQAIMDMKD 445
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/435 (43%), Positives = 279/435 (64%), Gaps = 8/435 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPI 117
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L P + L++ PTRELA Q++E F+ALGS + +RC V+VGGMD+++QA SL +
Sbjct: 118 LQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKK 177
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 178 PHIIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 235
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATM+S +++L S +N + ++TV TL Q Y+FIP KDVYL+++L+
Sbjct: 236 TYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLN 295
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +SAI+F T L++LL L ++ LH SQS RL AL +F+S I
Sbjct: 296 EYAG---QSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDI 352
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A S VTQ D+++
Sbjct: 353 LVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IE +GK+L+E++ +++EV+ RV +A+R A ++ D EK R
Sbjct: 413 RIENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKD--LHEKRGSRGATLKGRRPA 470
Query: 478 KGSLKKRSEKRKKSG 492
KG+ + R E ++ G
Sbjct: 471 KGAKRGRDEMDREEG 485
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/435 (43%), Positives = 279/435 (64%), Gaps = 8/435 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPI 117
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L P + L++ PTRELA Q++E F+ALGS + +RC V+VGGMD+++QA SL +
Sbjct: 118 LQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKK 177
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 178 PHIIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 235
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATM+S +++L S +N + ++TV TL Q Y+FIP KDVYL+++L+
Sbjct: 236 TYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLN 295
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +SAI+F T L++LL L ++ LH SQS RL AL +F+S I
Sbjct: 296 EYAG---QSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDI 352
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A S VTQ D+++
Sbjct: 353 LVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IE +GK+L+E++ +++EV+ RV +A+R A ++ D EK R
Sbjct: 413 RIENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKD--LHEKRGSRGATLKGRRPA 470
Query: 478 KGSLKKRSEKRKKSG 492
KG+ + R E ++ G
Sbjct: 471 KGAKRGRDEMDREEG 485
>gi|424513552|emb|CCO66174.1| predicted protein [Bathycoccus prasinos]
Length = 487
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 273/439 (62%), Gaps = 11/439 (2%)
Query: 19 SKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKEL 78
S T S+ E +P P + +N E + D + VTFA LG+ + C +
Sbjct: 2 SDTESEGEQKPLPTQKKQN------EDNDDSDDSDDDDAKVVTFASLGICKELCAACDAM 55
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138
+P+Q IP L GKDV+GLAQTGSGKT AFALP+L L +P LV++PTR
Sbjct: 56 KWPAASPIQIQSIPHALNGKDVIGLAQTGSGKTGAFALPVLQDLLHEPRAFHTLVLSPTR 115
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA Q+AEQF+ LG + ++C V+VGGMD+ +Q+ + RPHV++ TPGR+ LE
Sbjct: 116 ELASQIAEQFECLGKDIGVKCAVLVGGMDMTSQSLQIGKRPHVLVGTPGRVVDHLENTKG 175
Query: 199 IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSA 258
+ K L+LDEADR+L++ FEEE+ + + +P+ R+T LFSATMTS + L
Sbjct: 176 FS--LRQLKVLILDEADRLLNLDFEEEIDTILKVIPRERRTQLFSATMTSKVNKLQRACL 233
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
E + TV++LKQ Y+F+P K+ Y ++L+++ I ++F TC
Sbjct: 234 RDPVKVEVASKYSTVKSLKQNYLFVPAKHKECYACYLLNELSASTI---MMFTRTCEQTR 290
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
L+L+ L A+ +H SQ +R AL++FK G+ IL+ATDVASRGLDIP+VD+V+N
Sbjct: 291 KLALVARNLGFSAIPIHGQMSQPKRQGALNKFKGGERNILVATDVASRGLDIPSVDVVIN 350
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
+D+P +DYVHRVGRTARAGR GLA++ VTQ DV+L +IE ++ K+LE++ +E++ L
Sbjct: 351 FDVPMNSKDYVHRVGRTARAGRSGLAITLVTQYDVELYQKIERLIEKRLEKYPVEEEQCL 410
Query: 439 SDITRVYKARRVATMKLMD 457
+ RV +A+R+A ++ D
Sbjct: 411 VMLERVNEAQRIAASQMRD 429
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 292/471 (61%), Gaps = 18/471 (3%)
Query: 23 SKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRR 82
S+P+ P P E+ + E N + TFA LG+ E + C+ LG +R
Sbjct: 39 SQPKQPPAPSSEADS------ETIDNGSKQGNNDAAPKTFADLGIVESLCEACERLGYKR 92
Query: 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142
PTP+Q IP L+ +D++G+A+TGSGKTAAFALPIL L + P + ALV+ PTRELA
Sbjct: 93 PTPIQEQAIPLALQNRDLIGIAETGSGKTAAFALPILQALLDKPQPLFALVLAPTRELAA 152
Query: 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPV 202
Q+A+ F+ALGS + LRC +++GG+D++ QA +L +PHV++ATPGR+ LE+
Sbjct: 153 QIAQAFEALGSMISLRCALILGGLDMVQQAIALGKKPHVIVATPGRLLDHLEKTKGFS-- 210
Query: 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAY 262
K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L S
Sbjct: 211 LRNLKYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVESLQRASLRDPL 270
Query: 263 FYE-AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLS 321
+ ++TV TL Q YIFIP KD YL++++++ ++ IIF T ++
Sbjct: 271 KVSISTSKYQTVSTLVQHYIFIPHIHKDTYLIYLVNEFAG---KTIIIFTRTVLETQRIA 327
Query: 322 LLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI 381
+LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP VD VLN+D+
Sbjct: 328 ILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDL 387
Query: 382 PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDI 441
P+ + YVHRVGRTARAG+ G A+SFVTQ D+++ EA +G +L E+ ++ EV+
Sbjct: 388 PQDSKTYVHRVGRTARAGKSGHAISFVTQYDLEIWLRTEAALGYKLTEYPLEKDEVMVFK 447
Query: 442 TRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
RV +A+R+A ++ +K +E + +K K + GS+ R + + G
Sbjct: 448 PRVEEAQRIAKNEM------KKLQEEQDRKKKKKRKAGSVSARDDMDAEEG 492
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 199/476 (41%), Positives = 286/476 (60%), Gaps = 20/476 (4%)
Query: 17 PKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCK 76
PK+K++++P P+ EP + N TF LG+ + C+
Sbjct: 23 PKAKSKTEPIPKSN-EPSHDAGSDAESATVDNASREGNGKSVVKTFRDLGIVDSLCDACE 81
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
LG + PTP+Q IP L+ +D++G+A+TGSGKTAAFALPIL L + P + ALV+ P
Sbjct: 82 RLGYKNPTPIQQEAIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPQPLFALVLAP 141
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA Q+A+ F+ALGS + LRC +++GG+D++ QA +L +PHVV+ATPGR+ LE+
Sbjct: 142 TRELAAQIAQAFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKT 201
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
KFLV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L
Sbjct: 202 KGFS--LRNLKFLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVESLQRA 259
Query: 257 SANKAYFYE-AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
S + ++TV TL Q YIFIP KD YL+++ ++ I IIF T
Sbjct: 260 SLRDPLKVSISSSKYQTVSTLVQNYIFIPHMHKDTYLIYLCNEFAGQTI---IIFTRTVL 316
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
+++LL L A+ LH SQS RL AL++F++ IL+ATDVA+RGLDIP VD
Sbjct: 317 ETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAKSRDILVATDVAARGLDIPNVDC 376
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435
VLN+D+P+ + YVHRVGRTARAG+ G A+SFVTQ D+++ IEA +G +L E+ ++
Sbjct: 377 VLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYDLEIWLRIEAALGTKLTEYATEKD 436
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKS 491
EV+ RV +A+R AK KQ L+ +KGS+ K + RK+
Sbjct: 437 EVMVFKPRVEEAQR-------------HAKNEMKQLLEDRGKKGSVLKGGKGRKRG 479
>gi|170090862|ref|XP_001876653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648146|gb|EDR12389.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 422
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 192/421 (45%), Positives = 267/421 (63%), Gaps = 24/421 (5%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LG+++ + ++ PT VQ CIP +L G D +G A+TGSGKT AFALPIL
Sbjct: 1 SFASLGISDSLQSALTSMSIKTPTEVQAACIPPLLAGTDCIGNAKTGSGKTIAFALPILQ 60
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL DPYG+ ALV+TPTRELA+Q++EQF LG+ L+LR V+VGGMD++ QA L NRPH
Sbjct: 61 RLLADPYGIYALVLTPTRELAFQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGNRPH 120
Query: 181 VVIATPGRIKVLL-----EEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+VIATPGR+ L E D SR +FLVLDEADR+L F EL +F LP+
Sbjct: 121 IVIATPGRLVDHLRSSSGEWD------LSRVRFLVLDEADRLLTRTFSPELSHLFNVLPQ 174
Query: 236 NRQTLLFSATMTSDLQTLLELSA----NKAYFYEAYE----GFKTVETLKQQYIFIPKNV 287
+RQT LF+AT+T +++L + +A K + + E +TV TLKQ YI +P +V
Sbjct: 175 DRQTCLFTATLTPSIESLADATARPGKQKPFVHRMNERQVRRIETVSTLKQHYILVPSHV 234
Query: 288 KDVYLMHVLSKMEDMGIR-----SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQ 342
++ YL ++L D IIF + R+ L+L+L+ L + ALHS +Q +
Sbjct: 235 RETYLYYLLRNPPDDDDELEQPPPTIIFCARPRTAAYLTLVLKSLSIRSTALHSRLTQRE 294
Query: 343 RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402
RLS+L F++ +L++TDV SRGLDI V +V+N+D+P +Y HRVGRTARAGRGG
Sbjct: 295 RLSSLSLFRASVVPVLVSTDVGSRGLDIEDVAMVINWDMPEEAEEYTHRVGRTARAGRGG 354
Query: 403 LAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
+A+SFVT+ D D + +IE + +LEE E +VL + V A+R+A M L DD F +
Sbjct: 355 VAISFVTERDEDRVVKIEKRIKTKLEEMILSEDKVLEKLNAVSTAKRLAKMSLHDDKFGQ 414
Query: 463 K 463
+
Sbjct: 415 R 415
>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
gi|91207782|sp|Q4IFI0.1|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 486
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 195/450 (43%), Positives = 294/450 (65%), Gaps = 30/450 (6%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDS-TVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
EP+P S + P T D+ TF LG+ + + C++L + PTP+Q
Sbjct: 29 EPKPSSDEESEEESATLEEPSAEETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQE 88
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
IP L+G+D++GLA+TGSGKTAAFALP+L L + P + LV+ PTRELA Q+ + F
Sbjct: 89 KSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQAF 148
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT- 206
+ALGS + LRC V+VGG+D++ QA +L +PH+V+ATPGR+ LE+ FS RT
Sbjct: 149 EALGSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRLVDHLEKTKG----FSLRTL 204
Query: 207 KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------LEL 256
K+L++DEADR+LD+ F + + + +P+ R+T LFSAT++S +++L + +
Sbjct: 205 KYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLFSATISSKIESLQRASLRDPVKVSI 264
Query: 257 SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
S+NK ++TV TL Q Y+FIP KDV+L+++++ E G +S I+F T
Sbjct: 265 SSNK---------YQTVSTLLQNYLFIPHPQKDVHLIYLIN--EHAG-QSTIVFTRTVWE 312
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
+S+LL L A+ LH SQS RL AL++F+SG IL+ATDVA+RGLDIP+VD+V
Sbjct: 313 TQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVV 372
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
LNYD+P+ + Y+HRVGRTARAG+ G+A+S VTQ D+++ IEA +GK+L E+ +++E
Sbjct: 373 LNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKLAEYPTEKEE 432
Query: 437 VLSDITRVYKARRVATMKLMDDGFEEKAKE 466
V++ +RV +A+R+A ++ M EE+ K+
Sbjct: 433 VMAFQSRVEEAQRIARIE-MKSFTEERGKK 461
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 190/435 (43%), Positives = 279/435 (64%), Gaps = 8/435 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPI 117
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L P + L++ PTRELA Q++E F+ALGS + +RC V+VGGMD+++QA SL +
Sbjct: 118 LQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKK 177
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 178 PHIIVATPGRLLDHLENTKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 235
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATM+S +++L S +N + ++TV TL Q Y+FIP KD+YL+++L+
Sbjct: 236 TYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLN 295
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +SAI+F T L++LL L ++ LH SQS RL AL +F+S I
Sbjct: 296 EYAG---QSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDI 352
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A S VTQ D+++
Sbjct: 353 LVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IE +GK+L+E++ +++EV+ RV +A+R A ++ D EK R
Sbjct: 413 RIENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKD--LHEKRGSRGATLKGRRPA 470
Query: 478 KGSLKKRSEKRKKSG 492
KG+ + R E ++ G
Sbjct: 471 KGAKRGRDEMDREEG 485
>gi|212722850|ref|NP_001131651.1| uncharacterized protein LOC100193011 [Zea mays]
gi|194692160|gb|ACF80164.1| unknown [Zea mays]
gi|413934956|gb|AFW69507.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 455
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 191/409 (46%), Positives = 261/409 (63%), Gaps = 14/409 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL- 119
TFA LG+ V+ C +G + PT +Q IP L+GKD++ LAQTGSGKT AFALPIL
Sbjct: 25 TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84
Query: 120 ----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+R AE + A V++PTRELA Q+AEQF+ALGS + LRC V+VGG+D + Q S+
Sbjct: 85 ELLSNRQAEQSF--FACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSI 142
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPH+V+ TPGR+ L E + K+LVLDEAD++L+V FE+ L + +PK
Sbjct: 143 GKRPHIVVGTPGRLLDHLTETKGFS--LKKIKYLVLDEADKLLNVEFEKSLDDILSEMPK 200
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+R+T LFSATMT + L E + TV++LKQ++ F+P + KD YL+HV
Sbjct: 201 DRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV 260
Query: 296 LS-KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ ++E M +IFV TC S LL+L+L L +A+++ SQ +RL AL+RFK+
Sbjct: 261 LNERLESM----IMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKD 316
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAGR G AVS V Q +
Sbjct: 317 CNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQ 376
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++GK++++ + EVL + A+R+A KL D G +K
Sbjct: 377 WFVLIEQLLGKKIDQCKVDRDEVLILKGPISDAKRIALTKLKDSGGHKK 425
>gi|302833407|ref|XP_002948267.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
nagariensis]
gi|300266487|gb|EFJ50674.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
nagariensis]
Length = 410
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 186/406 (45%), Positives = 271/406 (66%), Gaps = 8/406 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ + LG + P+ +Q IP +L+G+DV+GLAQTGSGKT AF+LPIL
Sbjct: 1 FEKLGICTQLAEAAAGLGWKSPSNIQEQAIPHLLQGQDVIGLAQTGSGKTGAFSLPILQA 60
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L E P AL+++PTRELA Q+AEQ +ALGSG+ ++C V+VGG+D++ QA +L RPH+
Sbjct: 61 LMERPQEHFALILSPTRELAIQIAEQVEALGSGIGVKCAVLVGGIDMMAQAIALAKRPHI 120
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR+ L + K LVLDEAD++LD+ FE+E+ + + +P++R+T L
Sbjct: 121 LVGTPGRVVDHLSNTKGFN--LKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRDRRTQL 178
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATMT+ +Q L + E + TVETL+QQY+FIP KD YL +VL+++
Sbjct: 179 FSATMTNKVQKLQRACLVRPVKVEVAAKYSTVETLRQQYVFIPAKYKDCYLAYVLNELSG 238
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+ +IF TC S ++L+L L AV +H SQ +RL AL++FK+G+ +IL AT
Sbjct: 239 ---STFMIFTRTCESTRRIALMLRNLGFGAVPIHGHMSQPKRLGALNKFKAGERSILAAT 295
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVASRGLDIP+VD+V+NYD +DY+HRVGRTARAGR G +V+ VTQ DV+L +IE
Sbjct: 296 DVASRGLDIPSVDVVINYD---NSKDYIHRVGRTARAGRSGRSVTIVTQYDVELFQKIEH 352
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
+ G ++E+F+ + +EVL + RV A+R+A M++ + +K K +
Sbjct: 353 LTGVKMEQFQAEREEVLLLLERVSDAQRLAAMQMKEADAGKKGKRK 398
>gi|448103925|ref|XP_004200160.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
gi|359381582|emb|CCE82041.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
Length = 437
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 198/441 (44%), Positives = 277/441 (62%), Gaps = 18/441 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LG+A+W + + + PT +Q CIPK+L+G D +G A+TGSGKT AFA PIL
Sbjct: 1 MSFSDLGVAKWLCEALNSMKIYTPTAIQKACIPKVLKGHDCIGGAKTGSGKTIAFASPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDPYG+ LV+TPTRELA Q+AEQF ALG+ ++++ V+VGG D++ QA L RP
Sbjct: 61 TKWSEDPYGIYGLVLTPTRELALQIAEQFAALGATMNIKVCVIVGGDDIVKQALELQRRP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--N 236
H+VIATPGR+ +L D R K+LVLDEADR+L F +L F LPK N
Sbjct: 121 HIVIATPGRLADHILNSGEDTICGLRRVKYLVLDEADRLLSNSFGSDLERCFGVLPKPEN 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE------TLKQQYIFIPKNVKDV 290
RQTLLF+AT+T +++L E + TVE TL +Y+F+P VK+
Sbjct: 181 RQTLLFTATITDAVRSLKEKPVPEGKLPVFVNEVDTVENIAIPSTLSIKYLFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL H L + + + IIFV+ + LL +L +LD +LHS QS+R+++LHRF
Sbjct: 241 YL-HNLLTLPEYEKTTTIIFVNRTHTAELLRRMLRKLDFRVASLHSEMPQSERVNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+ A IL+ATDVASRGLDIP V+LV+NYDIP P D++HRVGRTARAGR G ++S V +
Sbjct: 300 KANAARILIATDVASRGLDIPDVNLVVNYDIPADPDDFIHRVGRTARAGRKGDSISIVAE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE--CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
DV+ I IE + K++E+ E + + + A+R A M + DGF EK R+
Sbjct: 360 KDVNRILAIEERINKKMEKMEDVTDNKVIKKSLKETSVAKREAMMDMDKDGFGEK---RR 416
Query: 469 KQKLKMLAEKGSLKKRSEKRK 489
K+K + + KK ++KRK
Sbjct: 417 TNKMK---RQDASKKPNKKRK 434
>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
gi|118595827|sp|Q2H1Q8.1|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
Length = 493
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 195/453 (43%), Positives = 282/453 (62%), Gaps = 28/453 (6%)
Query: 20 KTRSKPEPQPEP-EPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKEL 78
K ++KP+P P EP + + E + + + TF LG+ + CKEL
Sbjct: 24 KPKTKPQPVTAPVEPSAVPNSEAESETIDDASGEESEEPAPKTFQDLGIVDSLCDACKEL 83
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138
G ++PTP+Q IP L+ +D++GLA+TGSGKT AFALPIL L + P + ALV+ PTR
Sbjct: 84 GWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTR 143
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA Q+A+ F+ALGS + LRC +++GG+D++ QA +L +PHVV+ATPGR+ LE+
Sbjct: 144 ELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKG 203
Query: 199 IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----- 253
++LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L
Sbjct: 204 FS--LRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRACL 261
Query: 254 -----LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+ +S++K ++TV TL Q Y+FIP KD YL+++ ++ I I
Sbjct: 262 RDPLKVSISSSK---------YQTVSTLVQNYVFIPHTHKDTYLIYLCNEFAGQTI---I 309
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IF T +++LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGL
Sbjct: 310 IFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGL 369
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP VD VLN D+P + YVHRVGRTARAGR G A+SFVTQ D++L IEA +G +L
Sbjct: 370 DIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLRIEAALGTKLT 429
Query: 429 EFECKEQEVLSDITRVYKARRVATMK---LMDD 458
E+ ++ +V+ RV +A+R+A + LMDD
Sbjct: 430 EYSLEKDDVMVFRPRVEEAQRIAKTEIKALMDD 462
>gi|321464143|gb|EFX75153.1| hypothetical protein DAPPUDRAFT_226459 [Daphnia pulex]
Length = 447
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 270/424 (63%), Gaps = 25/424 (5%)
Query: 32 EPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCI 91
E ++++T + + TN + D+ TF LGL + C L PTP+Q I
Sbjct: 2 ESNMESSETNDVVEITN-----ASGDTKTTFVELGLRSELEEACNLLKWTEPTPIQREAI 56
Query: 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151
P L+G+DV+GLA+TGSGKT AF LP+LH L +P + L++TPTRELA+Q++EQ +AL
Sbjct: 57 PLALQGRDVIGLAETGSGKTGAFTLPMLHSLLSNPQRLFGLILTPTRELAFQISEQIEAL 116
Query: 152 GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211
GS + ++C V+VGG+D+++Q+ L +PH+VIATPGR+ LE K+L
Sbjct: 117 GSSIGVKCAVIVGGIDMISQSLMLAKKPHIVIATPGRLVDHLENTKGFN--LKSLKYL-- 172
Query: 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK 271
E D++L + +P+ R+TLLFSATMTS +Q L S + ++
Sbjct: 173 -EVDKIL------------KSIPRERRTLLFSATMTSKVQKLQRASLVNPVRVQISSKYQ 219
Query: 272 TVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEA 331
TV+ L Q Y+FIP +KDVYL+H+L+ E G S ++F STC S SLLL L A
Sbjct: 220 TVDKLLQYYVFIPLKMKDVYLVHLLN--EAAG-HSVMVFCSTCSSTLRTSLLLRALGISA 276
Query: 332 VALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHR 391
V LH +Q++RL+AL++FK+ +LLATDVASRGLDIP VD V+NYDIP + +DY+HR
Sbjct: 277 VPLHGQMTQNKRLAALNKFKARNRGVLLATDVASRGLDIPHVDWVINYDIPTHSKDYIHR 336
Query: 392 VGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
VGRTARAGR G A+SFVTQ DV+L IE ++GKQL + +E +V+S RV +A+RVA
Sbjct: 337 VGRTARAGRSGKAISFVTQYDVELYQRIEHLLGKQLPLYGLEEGDVMSLQERVAEAQRVA 396
Query: 452 TMKL 455
M L
Sbjct: 397 KMDL 400
>gi|303283774|ref|XP_003061178.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457529|gb|EEH54828.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 456
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 180/416 (43%), Positives = 269/416 (64%), Gaps = 7/416 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T + F LG+ E +LG + P+ +Q IP+ L+GKDV+GLAQTGSGKT AFA
Sbjct: 11 TAAVEAFTVLGVCEELATAAADLGWKDPSEIQRASIPQALQGKDVIGLAQTGSGKTGAFA 70
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL L + P ALV++PTRELA Q++EQF+ALG+G+ ++C V+VGG+D++ Q+ L
Sbjct: 71 LPILQELLDKPQAFFALVLSPTRELAIQISEQFEALGAGIGVKCAVLVGGVDMMAQSIQL 130
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPHVV+ TPGR+ L + + L LDEADR+L++ FE+E+ + + +P+
Sbjct: 131 GKRPHVVVGTPGRVVDHLTNTKGFG--LKQLQVLCLDEADRLLNLDFEQEIDQILKVIPR 188
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+R+T LFSATMTS + L E + TV +LKQQY+F+P KD Y ++
Sbjct: 189 DRRTQLFSATMTSKVAKLQRACLRNPVKVEVSAKYSTVASLKQQYLFVPAKHKDCYACYL 248
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ ++ + ++F TC L+L+ L A+ +H SQ +RL AL++FK+G+
Sbjct: 249 FN---ELSASTMMVFTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRLGALNKFKAGER 305
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVASRGLDIP VD+V+N+D+P+ +DYVHRVGRTARAGR GLA++ VTQ DV+L
Sbjct: 306 NVLVATDVASRGLDIPAVDVVINFDVPQNSKDYVHRVGRTARAGRSGLAITLVTQYDVEL 365
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
+IE ++ K+L+ + E+ VL RV +A+R+A ++ + +EK +K+ +
Sbjct: 366 YQKIERLINKKLDAYPAPEEAVLLMHERVNEAQRIALQQIREA--DEKGGGKKRNR 419
>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
Length = 434
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/408 (45%), Positives = 261/408 (63%), Gaps = 5/408 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ E V C +LG + PTP+Q +P L+G+D++GLAQTGSGKTAAFALPIL
Sbjct: 9 SFGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQ 68
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + + A V++PTRELA Q++EQF+ALGS + +R +VGG+ ++ QA +L PH
Sbjct: 69 ALFQQCHPFFACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPH 128
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ATPGR+ L K+LVLDEAD++L FE+E+ + + +P+ R+T
Sbjct: 129 IVVATPGRLLDHLTNTKGFS--LRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTF 186
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ + L E + T TLKQ+Y+F+P KD Y + +L++M
Sbjct: 187 LFSATMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVFLLNEMA 246
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+A++F TC S L+L+L L A+ + SQS+R AL +FK+G +L+
Sbjct: 247 G---STAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLIC 303
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G A+S VTQ DVDL IE
Sbjct: 304 TDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIE 363
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
++G L EF K EVL RV +A+R+A M + + +K+K+R+
Sbjct: 364 DLIGMTLPEFPAKADEVLLLEERVSEAQRLAAMHIREKDASKKSKKRR 411
>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
Length = 455
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/412 (46%), Positives = 262/412 (63%), Gaps = 14/412 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL- 119
TFA LG+ V+ C +G + PT +Q IP L+GKD++ LAQTGSGKT AFALPIL
Sbjct: 25 TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84
Query: 120 ----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+R AE + A V++PTRELA Q+AEQF+ALGS + LRC V+VGG+D + Q S+
Sbjct: 85 ELLSNRQAEQSF--FACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSI 142
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPH+V+ TPGR+ L E + K+LVLDEAD++L+V FE+ L + +PK
Sbjct: 143 GKRPHIVVGTPGRLLDHLTETKGFS--LKKIKYLVLDEADKLLNVEFEKSLDDILSEMPK 200
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+R+T LFSATMT + L E + TV++LKQ++ F+P + KD YL+HV
Sbjct: 201 DRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV 260
Query: 296 LS-KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ ++E M +IFV TC S LL+L+L L +A+++ SQ +RL AL+RFK+
Sbjct: 261 LNERLESM----IMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKD 316
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAGR G AVS V Q +
Sbjct: 317 CNILICTDVASRGLDIQGVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVNQYEAQ 376
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
IE ++GK++++ + EVL + A+R+A KL D G +K +
Sbjct: 377 WFVLIEQLLGKKIDQCKVDRDEVLILKGPISDAKRIALTKLKDSGGHKKRRN 428
>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
Length = 389
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 256/402 (63%), Gaps = 19/402 (4%)
Query: 29 PEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
P PE S +A +Q P P TF LGL + ++ ++L + PT +Q
Sbjct: 2 PSPEEASTSASPSQ-----APAP---------TFKSLGLIDPLLEALEQLNFKIPTEIQV 47
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
+P L+G+D++G+A TGSGKTAAFALPIL +L E+P G+ A ++ PTRELAYQ+++Q
Sbjct: 48 QALPHALQGRDIIGVASTGSGKTAAFALPILQKLWEEPKGLFACIMAPTRELAYQISQQI 107
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+ALGS + +RC +VGGMD + QA +L RPH+V+ATPGR+ LE+ KF
Sbjct: 108 EALGSAMGVRCVTLVGGMDKMAQAVALAKRPHIVVATPGRLNDHLEDTKGFS--LRGLKF 165
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE 268
LVLDEADR+LD+ F + + + +P+ R T LFSATMT+ + L S + E E
Sbjct: 166 LVLDEADRLLDMDFGPIIDKILKAIPRERTTYLFSATMTTKVAKLQRASLSNPVRVEVSE 225
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
+ TV TL Q Y+FIP KDV+L+++ + + S IIF T LS++L L
Sbjct: 226 KYSTVSTLLQYYLFIPLVQKDVHLIYLANILAQ---NSIIIFTRTVHDAQRLSIILRTLG 282
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
AV LH SQS RL AL +FKSG +L+ATDVASRGLDIP VD+V+NYDIP + +DY
Sbjct: 283 FPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPHVDVVINYDIPTHSKDY 342
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430
+HRVGRTARAGR G +++ VTQ DV+LI IE +GK++E +
Sbjct: 343 IHRVGRTARAGRSGKSITLVTQYDVELIQRIETTIGKKMELW 384
>gi|303273504|ref|XP_003056113.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
gi|226462197|gb|EEH59489.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
Length = 445
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 206/422 (48%), Positives = 277/422 (65%), Gaps = 8/422 (1%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
+T++ TFA LGL ++G+++PT VQ CIP IL G DV+G +QTGSGKTAAF
Sbjct: 26 STNARDTFASLGLNTRLCANVVKVGLQKPTAVQRECIPAILRGFDVVGTSQTGSGKTAAF 85
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPIL L DPYG+ L +TPTRELA Q+A+QF A SG+ LR +V+GG L QA +
Sbjct: 86 ALPILELLGVDPYGIFCLCLTPTRELASQIADQFDAFSSGILLRSCIVIGGESLRAQASA 145
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +RPHVV+ATPGR+ + +I FS LVLDEADR+L+ GF+ ELR++ LP
Sbjct: 146 LSSRPHVVVATPGRLVEHFLYNDEIVGAFSNLHSLVLDEADRLLEPGFDAELRIIMHNLP 205
Query: 235 -KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVY 291
+ R T LFSAT+T + + E++ A+ YEA GFK Q+Y F+P VK+VY
Sbjct: 206 SRRRNTHLFSATLTPSICAIQEVTQKTAFHYEAQSNPGFKDC---VQEYCFVPAKVKEVY 262
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+H+L + G+ S I+F T SC LL +L L + V LHS K Q R S L RFK
Sbjct: 263 LLHLLKVLLSNGVSSIIVFTRTIYSCELLHEMLGILGLDTVLLHSMKKQRIRASNLGRFK 322
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG+A IL+ATD+ASRGLDIPTVD+V+NYD+P PR+YVHR+GR R+GR G A++ V+Q
Sbjct: 323 SGEAQILIATDIASRGLDIPTVDVVINYDVPFVPREYVHRIGRAGRSGRRGRAITLVSQF 382
Query: 412 DVDLIHEIEAVVGKQLEEFE-CKEQEVLSDITRVYKARRVATMKLMD-DGFEEKAKERKK 469
++ L+H+IE + G L E E EVL +++ ++ ARR MK+ GFE++ + RKK
Sbjct: 383 EIVLLHKIEQLTGIDLGEVSGVVEGEVLKNMSAIFSARREGKMKMSQLGGFEDQLRLRKK 442
Query: 470 QK 471
K
Sbjct: 443 LK 444
>gi|392595723|gb|EIW85046.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 465
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 188/424 (44%), Positives = 272/424 (64%), Gaps = 22/424 (5%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LGL + ++ ++ ++PT +Q+ +P L G+D++G+A+TGSGKTAAFALPIL +L E
Sbjct: 20 LGLIDPLLKALDQVNFKQPTEIQSQALPSALLGRDIIGVAETGSGKTAAFALPILQKLWE 79
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
+P G+ A ++ PTRELAYQ+++QF++LGS + +RC V+VGG+D + QA +L RPH+++A
Sbjct: 80 EPKGLFACILAPTRELAYQISQQFESLGSAMGVRCLVLVGGVDRMPQAVALAKRPHIIVA 139
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGR+ L+ KFLVLDEADR+LD+ F ++ + + +PK R T LFSA
Sbjct: 140 TPGRLNDHLQNTKGFS--LRSLKFLVLDEADRLLDMDFGPDIDQILKVIPKERTTYLFSA 197
Query: 245 TMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI 304
TMT+ + L S + E ++TV TL Q Y+FIP KDV+L+++++ +
Sbjct: 198 TMTTKVAKLQRASLSNPVRVEVSSKYQTVSTLLQYYLFIPLAQKDVHLVYLVNSLAS--- 254
Query: 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364
S I+F T LS++L L AV LH SQSQRL AL +FKSG IL+ATDVA
Sbjct: 255 NSIILFTRTVHDAQRLSIVLRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRNILVATDVA 314
Query: 365 S----------------RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
S RGLD+P+VD+V+N+DIP + +DY+HRVGRTARAGR G +V+ V
Sbjct: 315 SRHVLHSGFMGPTDHHYRGLDLPSVDVVINFDIPSHSKDYIHRVGRTARAGRSGKSVTIV 374
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDG-FEEKAKER 467
TQ DV+LI IE V+ K++E + E+EV RV +A RVA +L ++ F E K R
Sbjct: 375 TQYDVELIQRIETVIAKKMELWPTDEEEVALLRERVEEAGRVAINELKEEARFNEGRKRR 434
Query: 468 KKQK 471
++ +
Sbjct: 435 REDR 438
>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
gi|143462316|sp|Q0UK12.2|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
Length = 546
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 185/399 (46%), Positives = 261/399 (65%), Gaps = 7/399 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E C+ LG + TP+QT IP L GKD++GLA+TGSGKTAAF LPIL
Sbjct: 116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQ 175
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P L++ PTRELAYQ+++Q ALGS ++++C +VGGMD++ QA +L RPH
Sbjct: 176 ALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH 235
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQT 239
+++A+PGR+ LE K+LVLDEADR+LD+ F + L +F+ LP+ +R T
Sbjct: 236 IIVASPGRLLDHLENTKGFS--LKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHT 293
Query: 240 LLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
LFSATM+S +++L + N + + V TL Q Y+ IP KD+YL+H+L+
Sbjct: 294 YLFSATMSSKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLN- 352
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+++G + I+F T L++LL L +A+ LH SQS RL AL++FK+ IL
Sbjct: 353 -DNIG-HATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDIL 410
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VDLV+N+D+P YVHRVGRTARAG+ G AVSFVTQ D+++
Sbjct: 411 VATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQR 470
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE +GKQ+ E + EV+ RV +A+RVA ++ D
Sbjct: 471 IEHALGKQVPEEKVSRDEVMVYAERVGEAQRVAVREMKD 509
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 264/406 (65%), Gaps = 5/406 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+P++ +FA LG++ + C +G ++P+ +Q IP LEGKD++GLAQTGSG
Sbjct: 28 NPDAPEASHNKSFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSG 87
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAF+LPIL L E+P ALV+ PTRELAYQ+++Q +LGSG+ +R V+VGGMD++
Sbjct: 88 KTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMM 147
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
+Q+ +L RPHV++ATPGR+ LE K+LV+DEADR+LD+ F + V
Sbjct: 148 SQSIALSKRPHVIVATPGRLMDHLENTKGFS--LKSLKYLVMDEADRLLDLDFGPIIDKV 205
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ +PK R T LFSATMT+ + L S NK E + TV TL Q Y+ +P KD
Sbjct: 206 LKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKD 265
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL+++ +++ S IIF T LS++L L A+ LH +QS RL++L++
Sbjct: 266 SYLLYLANELSS---SSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNK 322
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FKSG +IL+ATDVASRGLDIP VDLV+NYD+P +DYVHRVGRTARAGR G +++ VT
Sbjct: 323 FKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVT 382
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
Q DV+++ IE+ +GK++ F+ ++ V V +A R A +++
Sbjct: 383 QYDVEILQRIESHIGKKMTSFDVDKEAVALLTDTVARANREAALEI 428
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 191/431 (44%), Positives = 288/431 (66%), Gaps = 30/431 (6%)
Query: 49 PDPNSTTTDS-TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
P T D+ TF LG+ + + C++L + PTP+Q IP L+G+D++GLA+TG
Sbjct: 48 PSAEETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEQSIPVALQGRDIIGLAETG 107
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
SGKTAAFALP+L L + P + LV+ PTRELA Q+ + F+ALGS + LRC V+VGG+D
Sbjct: 108 SGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLD 167
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDVGFEEE 225
++ Q+ +L +PH+++ATPGR+ LE+ FS RT K+L++DEADR+LD+ F
Sbjct: 168 MVPQSIALGKKPHIIVATPGRLVDHLEKTKG----FSLRTLKYLIMDEADRLLDMDFGPS 223
Query: 226 LRVVFQCLPKNRQTLLFSATMTSDLQTL----------LELSANKAYFYEAYEGFKTVET 275
+ + + +P+ R+T LFSAT++S +++L + +S+NK ++TV T
Sbjct: 224 IDKILKFVPRERRTYLFSATISSKIESLQRASLRDPVKVSISSNK---------YQTVST 274
Query: 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALH 335
L Q Y+FIP KDV+L+++++ E G +S I+F T +S+LL L A+ LH
Sbjct: 275 LLQHYLFIPHPQKDVHLIYLIN--EHAG-QSTIVFTRTVWETQRVSILLRTLGFGAIPLH 331
Query: 336 SFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRT 395
SQS RL AL++F+SG IL+ATDVA+RGLDIP+VD+VLNYD+P+ + YVHRVGRT
Sbjct: 332 GQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYVHRVGRT 391
Query: 396 ARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
ARAG+ G+A+S VTQ D+++ IEA +GK+L E+ +++EV++ +RV +A+RVA ++
Sbjct: 392 ARAGKSGVAISLVTQYDLEIYLRIEAALGKKLGEYPTEKEEVMAFQSRVEEAQRVARIE- 450
Query: 456 MDDGFEEKAKE 466
M EE+ K+
Sbjct: 451 MKSFTEERGKK 461
>gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
yFS275]
gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
yFS275]
Length = 461
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 189/445 (42%), Positives = 280/445 (62%), Gaps = 12/445 (2%)
Query: 35 SKNAKTTQLEKFTNPDPNSTTTDSTV------TFAGLGLAEWAVQTCKELGMRRPTPVQT 88
+K AK + + T D T DS V TF LG+ + + C++L + P+ +Q
Sbjct: 12 AKGAKIST-KAITKEDEVPKTNDSAVEQVEGVTFKELGVIDEICEACEKLNFKAPSAIQK 70
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
IP L+ +D++GLAQTGSGKTAAFA+P++ L E+P +V+ PTRELAYQ++EQF
Sbjct: 71 EAIPAALKQQDIIGLAQTGSGKTAAFAIPVIQALWENPCPFFGVVLAPTRELAYQISEQF 130
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+ALG + ++ V+VGGMD++TQA ++ +PH+++ TPGR+ LE K+
Sbjct: 131 EALGGAMGVKSVVIVGGMDMVTQAVAISKKPHILVCTPGRLMDHLENTKGFS--LRNLKY 188
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE 268
LV+DEADR+LD+ F + + + +PK R+T LFSATMTS ++ L S +
Sbjct: 189 LVMDEADRLLDMDFGPIIDKILKVIPKERRTFLFSATMTSKVEKLQRASLHNPVRIAVSS 248
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
F TV+TL Q+Y+F P KD YL++++++M +S IIF T +++LL L
Sbjct: 249 KFSTVDTLLQKYLFFPFKHKDTYLVYIVNEMAG---QSMIIFTRTVNDTQRVAILLRSLG 305
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
A+ LH SQS RL AL++FKSG +IL+ATDVA+RGLDIP VD V+NYDIP + Y
Sbjct: 306 FSAIPLHGQLSQSSRLGALNKFKSGARSILVATDVAARGLDIPLVDAVINYDIPTDSKAY 365
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+HRVGRTARAGR G +++ VTQ D++ IEA + K++EE++ +++VL RV +A+
Sbjct: 366 IHRVGRTARAGRSGKSIALVTQYDLEPFLRIEAAIQKKMEEYDAPKEDVLLLSERVGEAQ 425
Query: 449 RVATMKLMDDGFEEKAKERKKQKLK 473
R A +++ + + K K R K K K
Sbjct: 426 REAIIQMKEIHEKRKMKGRGKGKRK 450
>gi|357618886|gb|EHJ71689.1| hypothetical protein KGM_12880 [Danaus plexippus]
Length = 533
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 186/420 (44%), Positives = 262/420 (62%), Gaps = 10/420 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ W + LG++ PTP+Q CIP IL G+D +G A+TGSGKT AFALPIL
Sbjct: 9 FEELGVKRWLINQLITLGIKTPTPIQKGCIPNILSGQDCIGAAKTGSGKTFAFALPILQN 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
LAEDPYG+ ALV+TPT ELAYQ+A+QF LG L LR +V GG D L ++ L RPH+
Sbjct: 69 LAEDPYGIFALVLTPTHELAYQIADQFLILGQPLKLRVCIVTGGSDQLEESLKLAKRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V+A PGR L + FS + K+LVLDEADR+ F +L +F+ LP+ RQ
Sbjct: 129 VVAMPGR----LADHISGCDTFSLKKIKYLVLDEADRLFSESFTGDLETIFEALPQKRQN 184
Query: 240 LLFSATMTSDLQTLLELSANKAYF--YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LLFSAT+T D++ LS NK + + TV TL Q+Y+ P +DVYL+ L
Sbjct: 185 LLFSATITEDVKESKVLSLNKDNLSTWCDTDTTLTVSTLDQRYVVCPAYARDVYLVQTLR 244
Query: 298 KMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K + S I+F T + C +LS++L ++ + V LH F Q +R+SAL +F+S
Sbjct: 245 KYREGAPSSHVIVFTDTKKECQVLSMMLADIGMDNVCLHGFMRQKERVSALAQFRSNLKC 304
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+AT+VA+RGLDIP+VDLV+N+ +P P++Y+HRVGRTARAGR G+A+S +T D+ +
Sbjct: 305 TLIATNVAARGLDIPSVDLVVNHKLPLEPKEYIHRVGRTARAGRSGMAISIITPYDILRL 364
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
EIE + +L E++ + E + T V +RR + D FE + + ++++ MLA
Sbjct: 365 GEIEDEIRTKLSEYKIDDDEAVRVFTTVSVSRRTQEAAIDDTEFETRQRNYRRKRW-MLA 423
>gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis]
Length = 485
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 180/394 (45%), Positives = 254/394 (64%), Gaps = 8/394 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILE---GKDVLGLAQTGSGKTAAFALP 117
TF+ G+ + Q LG + P+ +Q + L+ KD++ +A+TGSGKT AFA+P
Sbjct: 53 TFSDYGVCDTLCQAIDNLGWKHPSSIQRDVLKIALQEDQNKDIIAIAETGSGKTGAFAIP 112
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
I+ RL ++P + AL++TPTRELA+Q++EQF+ALGS + L+ V+VGG+D++ QA +L
Sbjct: 113 IIQRLIDNPQRMYALIVTPTRELAFQISEQFEALGSSVGLKTAVIVGGIDMVQQALALAR 172
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+PHVV+ TPGR+ LE + K+LVLDEADR L + FEE + + C PK R
Sbjct: 173 KPHVVVGTPGRLVDHLENTKGFS--LNTMKYLVLDEADRCLSMDFEEAIDKILSCFPKER 230
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATMT + L S + ++TV TL QQY+FIP K+ YL +++
Sbjct: 231 VTYLFSATMTQKVVKLQRASLQDPVKIQVSSKYQTVSTLIQQYLFIPAKYKECYLAFIMN 290
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +S I+FVSTC S LL+L L L +AV ++ SQ +RL AL++FK G I
Sbjct: 291 EFRG---KSTILFVSTCSSSQLLTLFLRNLGFKAVCINGNLSQVKRLGALNKFKEGARNI 347
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIP VDLV+NYDIP +DYVHRVGRTARAG+ G A++FVTQ DV+
Sbjct: 348 LIATDVASRGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARAGKSGRAITFVTQYDVESYQ 407
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IE ++ K+L+ + C E E L+ + +A ++A
Sbjct: 408 RIEKLIEKRLDAYPCSENEALTYLQTTTEALQIA 441
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 182/395 (46%), Positives = 260/395 (65%), Gaps = 5/395 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG++ + C +G ++P+ +Q IP LEGKD++GLAQTGSGKTAAF+LPIL
Sbjct: 39 TFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQ 98
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E+P ALV+ PTRELAYQ+++Q +LGSG+ +R V+VGGMD+++Q+ +L RPH
Sbjct: 99 TLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH 158
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F + + + +PK R T
Sbjct: 159 IIVATPGRLMDHLENTKGFS--LKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNTY 216
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ + L S NK E + TV TL Q Y+ +P KD YL+++ +++
Sbjct: 217 LFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELS 276
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF T LS++L L A+ LH +QS RL++L++FKSG +IL+A
Sbjct: 277 S---SSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVA 333
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VDLV+NYD+P +DYVHRVGRTARAGR G +++ VTQ DV+++ IE
Sbjct: 334 TDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIE 393
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+ +GK++ F+ ++ V V KA R A +++
Sbjct: 394 SHIGKKMTSFDVDKEAVALLTDTVAKANREAALEM 428
>gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri]
gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS), partial [Ostreococcus tauri]
Length = 382
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 181/380 (47%), Positives = 252/380 (66%), Gaps = 9/380 (2%)
Query: 50 DPNSTTT----DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
D ++ TT D TFA LGL + V C+ELG R P+ +Q IP+ L+G+DV+GLAQ
Sbjct: 5 DDDAVTTTADDDKKPTFASLGLCKELVSACEELGWREPSAIQQKSIPEALQGRDVIGLAQ 64
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TGSGKT AFALPIL L ++P +L+++PTRELA Q+AEQ +ALG G+ +R +VGG
Sbjct: 65 TGSGKTGAFALPILQSLLDEPRTYHSLILSPTRELAIQIAEQVEALGRGIGVRTATLVGG 124
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225
+++ +QA L RPHVV+ TPGR+ LE K LVLDEADR+L++ FEEE
Sbjct: 125 IEMTSQAIMLGKRPHVVVGTPGRVVDHLENTKGFG--LKALKVLVLDEADRLLNLDFEEE 182
Query: 226 LRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285
+ + + +P++R+T LFSATMTS +Q L E + TV++L+Q Y+FIP
Sbjct: 183 IDKILRVIPQDRRTQLFSATMTSKVQKLQRACLRDPVKVEVSAKYSTVDSLRQHYLFIPA 242
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
KD Y ++ + ++ + I+F TC L+L+ L AV +H SQ +R++
Sbjct: 243 KHKDCYATYLFN---ELSASTLIVFARTCDQTRKLALIARNLGFGAVPIHGQMSQPKRIA 299
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
AL +FK+G+ IL+ATDVASRGLDIP+VD+V+NYD+P+ +DYVHRVGRTARAGR GLAV
Sbjct: 300 ALQKFKAGERNILIATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAV 359
Query: 406 SFVTQNDVDLIHEIEAVVGK 425
+ VTQ DV+L +IE ++ K
Sbjct: 360 TMVTQYDVELYQKIERLINK 379
>gi|392566869|gb|EIW60044.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 420
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/387 (46%), Positives = 255/387 (65%), Gaps = 5/387 (1%)
Query: 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142
PT +Q +P L+G+D++G+A TGSGKTAAFALPIL +L E+P G+ A V+ PTRELA
Sbjct: 6 PTEIQAEVLPHALQGRDIIGVASTGSGKTAAFALPILQKLWEEPKGLFACVLAPTRELAV 65
Query: 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPV 202
Q+A+QF+++GS + +RC ++GG+D++ Q +L +PH+V+ATPGR+ LEE
Sbjct: 66 QIAQQFESIGSAMGVRCATIIGGVDIMAQKVALAKKPHIVVATPGRLNDHLEETKGFS-- 123
Query: 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAY 262
+FLVLDEADR+LD+ F + + + +PK R T LFSATMT+ + L S +
Sbjct: 124 LRSLQFLVLDEADRLLDMDFGPIIDKILKVIPKERTTYLFSATMTTKVAKLQRASLSNPV 183
Query: 263 FYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSL 322
E + TV TL Q Y+ IP KDV+L+++ + + S IIF T LS+
Sbjct: 184 RIEVNSKYSTVSTLLQYYLLIPLPQKDVHLIYLANTLAQ---NSIIIFTRTVHDAQRLSI 240
Query: 323 LLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIP 382
+L L A+ LH SQS RL AL +FKSG +L+ATDVASRGLDIP+VD+V+NYDIP
Sbjct: 241 ILRTLGFPAIPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPSVDVVINYDIP 300
Query: 383 RYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDIT 442
+ +DY+HRVGRTARAGR G +V+ VTQ DV+L+ IE V+GK++E + ++EV
Sbjct: 301 THSKDYIHRVGRTARAGRSGKSVTLVTQYDVELVLRIEQVIGKKMELWPVDKEEVALLRE 360
Query: 443 RVYKARRVATMKLMDDGFEEKAKERKK 469
RV +A R+AT ++ + G K+RK+
Sbjct: 361 RVDEAGRLATSEMREQGIRGGHKKRKR 387
>gi|359473682|ref|XP_003631346.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
10-like [Vitis vinifera]
Length = 436
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 197/434 (45%), Positives = 288/434 (66%), Gaps = 12/434 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ E V+ C+ LG + P+ +Q IP LEGKD++GLAQTGSGKT AFALPIL
Sbjct: 10 SFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 69
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + A V++PTRELA Q+AEQF+ALGSG+ L+C V+VGG+D QA +L RPH
Sbjct: 70 ALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPH 129
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
+V+ T G L++ + RT K+LVLDEADR+L+ FE+ + + +P+ R+T
Sbjct: 130 IVVGTLG---XLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPQERKT 186
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT ++ L EA + TV+TLKQQY F+P K+ YL+++L+++
Sbjct: 187 YLFSATMTKKVRKLQRACLRNPVKIEAGSKYSTVDTLKQQYRFVPAKYKECYLVYILTEL 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+ ++F TC + LL+LLL L A+ + SQ++RL AL++FK+G+ IL+
Sbjct: 247 SG---STTMVFTRTCDATRLLALLLRNLGLGAIPISGHMSQTKRLGALNKFKAGECNILI 303
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTA AGR G+A+S V Q +++ +I
Sbjct: 304 CTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTAHAGRSGVAISLVNQYELEWYIQI 363
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK---ERKKQKLKMLA 476
E ++GK+L EF +E+EVL + RV +A+R++ MK+ + G ++K + E +++ + LA
Sbjct: 364 EKLIGKKLPEFPAQEEEVLLLLERVTEAKRISQMKIKETGGKKKRRGGDEGEEEIDRYLA 423
Query: 477 EKGSLKKRSEKRKK 490
K K S+K KK
Sbjct: 424 SKNG--KSSKKLKK 435
>gi|384252067|gb|EIE25544.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 415
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 267/405 (65%), Gaps = 7/405 (1%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P D+ F LG+ + LG + PT +Q +P +L DV+GLAQTGSGK
Sbjct: 5 PQHDNEDAIKLFEKLGVCRQLAEAAASLGWKVPTSIQEQAVPHLL--ADVIGLAQTGSGK 62
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
T AFA+PIL L + P ALV++PTRELA Q+AEQF+ALG+G+ +RC V+VGG+D++
Sbjct: 63 TGAFAMPILQELLDTPQANFALVLSPTRELALQIAEQFEALGAGIGVRCAVLVGGIDMMA 122
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
QA +L RPH+++ TPGR+ L + LVLDEADR+L++ FE+E+ +
Sbjct: 123 QAIALGKRPHIIVGTPGRVVDHLSNTKGF--TLKALRHLVLDEADRLLNMDFEQEIDQIL 180
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
+ +P+ R+T LFSATMT+ + L E ++TV+TL+QQY+FIP KD
Sbjct: 181 KVIPRERRTQLFSATMTTKVAKLQRACLQNPVKVEVDAKYRTVDTLRQQYLFIPAKHKDC 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL + L+++ + ++F TC + L+L+L L +A+ +H SQ +RL AL++F
Sbjct: 241 YLAYFLTELAGA---TFMVFTRTCDNTRKLALMLRNLGFDALPIHGQMSQPKRLGALNKF 297
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G+ +IL ATDVASRGLDIP VD+V+NYD+P +DYVHRVGRTARAGR G +++ VTQ
Sbjct: 298 KAGERSILAATDVASRGLDIPAVDVVVNYDVPINSKDYVHRVGRTARAGRSGRSLTLVTQ 357
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
DV+ +IEA+ G+++E+++ +E+ L + RV +A+++ATM++
Sbjct: 358 YDVEQFQKIEALTGQKMEKYDAEEEAALLLLERVTEAQKMATMQV 402
>gi|400595961|gb|EJP63749.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 472
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 184/394 (46%), Positives = 266/394 (67%), Gaps = 10/394 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + ++C+ +G PT +Q IP L+G+DV+GLA+TGSGKTAAFALP+L
Sbjct: 51 TFKELGIVDALCESCESVGYTTPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFALPMLQ 110
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + LV+ PTRELA Q+ + F+ALG+ + LRC V+VGG+D++ QA +L +PH
Sbjct: 111 ALLEKPQPLFGLVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAIALGKKPH 170
Query: 181 VVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
V++ATPGR+ LE+ FS RT K+LV+DEADR+LD+ F + + + +P+ R+
Sbjct: 171 VIVATPGRLVDHLEKTKG----FSLRTLKYLVMDEADRLLDMDFGPSIDKLLKFVPRERR 226
Query: 239 TLLFSATMTSDLQTLLELSA-NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATM+S +++L S + + ++TV TL Q Y+FIP KD YL+H+++
Sbjct: 227 TYLFSATMSSRVESLQRASLRDPVRVSVSSSKYQTVSTLLQHYVFIPHIRKDTYLIHIIN 286
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +S I+F T +++LL L A+ LH SQS RL AL++F+ G I
Sbjct: 287 EFAG---KSCIVFTRTVYETQRVAILLRTLGFGAIPLHGQLSQSARLGALNKFRGGTREI 343
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP VD+VLNYDIP + Y+HRVGRTARAG+ G+A+S VTQ D++L
Sbjct: 344 LVATDVAARGLDIPKVDIVLNYDIPSDSKTYIHRVGRTARAGKSGVAISLVTQYDLELFT 403
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IEA +GK+L+EF +++EV++ RV +A+R A
Sbjct: 404 RIEAALGKKLDEFPTEKEEVMTFQARVEEAQRHA 437
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/459 (41%), Positives = 285/459 (62%), Gaps = 13/459 (2%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNP-----DPNSTTTDSTVTFAGLGLAEWAV 72
K + ++ PQ E +S+ + + N +P+ + +F LGL E
Sbjct: 5 KKRKIAREAPQQEDHSDSEAHSSASEDAAPNTTEQEQEPSEAPKQAPKSFKELGLIEQLC 64
Query: 73 QTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLAL 132
+ C +G + PT +Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P L
Sbjct: 65 EACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGL 124
Query: 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVL 192
V+ PTRELAYQ+++ F+ LGS + +R V+VGGMD+++Q+ +L +PH+++ATPGR+
Sbjct: 125 VLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDH 184
Query: 193 LEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQT 252
LE K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++
Sbjct: 185 LENTKGFS--LRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSSKVES 242
Query: 253 LLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFV 311
L S N + F+TV TL+Q YIFIP KD+YL+++L+ E +G +S IIF
Sbjct: 243 LQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLN--EFVG-QSCIIFC 299
Query: 312 STCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP 371
T LS L L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP
Sbjct: 300 RTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP 359
Query: 372 TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431
+VD+VLN+D+P + ++HR+GRTARAG+ G+A+SF TQ DV+ IE +GK+L E+
Sbjct: 360 SVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKKLPEYP 419
Query: 432 CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
++ EV+ RV +A+R A +++ + ++EK R K+
Sbjct: 420 AEKDEVMVLAERVSEAQRSAILEMKN--YDEKKGSRGKK 456
>gi|260808869|ref|XP_002599229.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
gi|229284506|gb|EEN55241.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
Length = 436
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 188/395 (47%), Positives = 257/395 (65%), Gaps = 21/395 (5%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C+ L PT +QT IP LEGKDV+GLA+TGSGKT FALPIL
Sbjct: 22 TFKDLGVVDVLCEACEHLKWTTPTKIQTEAIPLALEGKDVIGLAETGSGKTGTFALPILQ 81
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C VVVGG+D++TQA L +PH
Sbjct: 82 SLLEKPQRLFALVLTPTRELAFQISEQFEALGSSIGIKCVVVVGGIDMVTQALQLAKKPH 141
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
V+IATPGR+ LE K+LV D++L V +P+ R T
Sbjct: 142 VIIATPGRLVDHLENTKGFN--LRALKYLV----DKILKV------------IPRERHTY 183
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L S + E +KTV+TL+Q Y+FIP KDVYL+ +L+++
Sbjct: 184 LFSATMTKKVAKLQRASLSNPVKVEVNSKYKTVDTLQQSYLFIPSKYKDVYLVSILNELA 243
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S ++F STC + + LL L A+ LH SQ+ RL ALH+FK+ +IL+A
Sbjct: 244 G---NSFMVFCSTCNNTQRTAFLLRNLGFNAIPLHGQLSQNSRLGALHKFKAKSRSILIA 300
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L IE
Sbjct: 301 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIE 360
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
++GK+L ++ +E+EV+ RV +A+R A M++
Sbjct: 361 HLIGKKLPLYKTEEEEVMVMNERVMEAQRYARMEM 395
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/422 (44%), Positives = 272/422 (64%), Gaps = 8/422 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+P+ + +F LGL E + C +G + PT +Q IP L+G+D++GLA+TGSG
Sbjct: 42 EPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSG 101
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFALPIL L + P LV+ PTRELAYQ+++ F+ LGS + +R V+VGGMD++
Sbjct: 102 KTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMV 161
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
+Q+ +L +PH+++ATPGR+ LE K+LV+DEADR+LD+ F L +
Sbjct: 162 SQSIALGKKPHIIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDMDFGPILDKI 219
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ LP+ R+T LFSATM+S +++L S N + F+TV TL+Q YIFIP K
Sbjct: 220 LKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHK 279
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D+YL+++L+ E +G +S IIF T LS L L A+ LH SQS RL AL
Sbjct: 280 DLYLVYLLN--EFVG-QSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALG 336
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F+S IL+ATDVA+RGLDIP+VD+VLN+D+P + ++HR+GRTARAG+ G+A+SF
Sbjct: 337 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFA 396
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV+ IE +GK+L E+ ++ EV+ RV +A+R A +++ + ++EK R
Sbjct: 397 TQYDVEAWLRIEGALGKKLPEYPAEKDEVMVLAERVSEAQRSAILEMKN--YDEKKGSRG 454
Query: 469 KQ 470
K+
Sbjct: 455 KK 456
>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 190/411 (46%), Positives = 263/411 (63%), Gaps = 8/411 (1%)
Query: 50 DPNSTTTDSTV-TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
+P +T D TFA LG+ E C+ L + PTP+QT IP LEG+DV+GLA+TGS
Sbjct: 75 EPATTGADEVKKTFADLGIREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGS 134
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKTAAF LPIL L E P + L++ PTRELAYQ+A+Q ALGS ++++C +VGGMD+
Sbjct: 135 GKTAAFVLPILQSLLEKPQPLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDM 194
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ QA +L RPH+V+ATPGR+ LE K++VLDEADR+LD+ F L
Sbjct: 195 VPQAIALSKRPHIVVATPGRLLDHLENTKGFS--LKHLKYMVLDEADRLLDLDFGPVLDK 252
Query: 229 VFQCLPK-NRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + LP+ R T LFSATM+S ++ L + N + + V TL Q+Y FIP
Sbjct: 253 ILKVLPREGRHTYLFSATMSSKVENLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIPHK 312
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KD+YL+H+L+ +++G IIF T +++LL L A+ LH SQS RL A
Sbjct: 313 YKDLYLIHLLN--DNIG-HPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGA 369
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++FKS IL+ATDVA+RGLDIP VDL++N+D+P + YVHRVGRTARAG+ G AVS
Sbjct: 370 LNKFKSKSRDILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVS 429
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
FVTQ D+++ IE +GK++ E + E + + RV +A+RVA ++ D
Sbjct: 430 FVTQYDLEIWLRIEHALGKKIPEQTFDKDEAMVYMDRVSEAQRVAIREMKD 480
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 183/432 (42%), Positives = 275/432 (63%), Gaps = 14/432 (3%)
Query: 19 SKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKEL 78
S +++ P+P E E + + ++ +P TF LG+ + + C+ L
Sbjct: 23 SASQASPDPPTEEESATLDVASSADAADAPEEPK--------TFKELGIVDSLCEACESL 74
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138
+ PT +Q IP L+G+DV+GLA+TGSGKTAAFALPIL L E P + LV+ PTR
Sbjct: 75 NYKHPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFALPILQALLEKPQPLFGLVLAPTR 134
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA Q+ + F+ALG+ + LRC V+VGG+D++ QA +L +PH+++ATPGR+ LE+
Sbjct: 135 ELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVDHLEKTKG 194
Query: 199 IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSA 258
K+LV+DEADR+LD+ F + + + +P+ R+T LFSAT++S +++L S
Sbjct: 195 FS--LRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTYLFSATLSSKVESLQRASL 252
Query: 259 -NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSC 317
+ + ++TV TL Q YIF+P KD YL++++++ +S IIF T
Sbjct: 253 RDPVRVSVSSSKYQTVSTLLQHYIFVPHKRKDTYLIYLVNEFAG---KSIIIFTRTVFET 309
Query: 318 HLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377
+++LL L A+ LH SQS RL AL++FK G IL+ATDVA+RGLDIP VD+VL
Sbjct: 310 QRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFKGGSREILVATDVAARGLDIPAVDVVL 369
Query: 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437
N D+P+ + Y+HRVGRTARAG+ G+A+S VTQ DV++ IEA +GKQLE + +++EV
Sbjct: 370 NLDLPQDSKTYIHRVGRTARAGKSGIAISIVTQYDVEIYQRIEAALGKQLETYPTEKEEV 429
Query: 438 LSDITRVYKARR 449
++ +RV +A+R
Sbjct: 430 MAFQSRVEEAQR 441
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia
fuckeliana]
Length = 486
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 292/469 (62%), Gaps = 40/469 (8%)
Query: 48 NPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK 93
+P+P T D+ V +F LG+ + + C LG + PTP+Q IP
Sbjct: 34 SPEPIEDTEDNRVIEETEEAEEDDAPKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPL 93
Query: 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153
L+G+D++GLA+TGSGKTAAFALPIL L + P + LV+ PTRELAYQ+++QF+ALGS
Sbjct: 94 ALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGS 153
Query: 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213
+ ++C V+VGGMD++ Q+ +L +PH+++ATPGR+ LE K+LV+DE
Sbjct: 154 VIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFS--LRSLKYLVMDE 211
Query: 214 ADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------LELSANKAYF 263
ADR+LD+ F L + + LP+ R+T LFSAT++S +++L + +S+NK
Sbjct: 212 ADRLLDLDFGPILDKILKVLPRERRTYLFSATISSKVESLQRASLKDPLRVSISSNK--- 268
Query: 264 YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLL 323
++TV TL Q YIFIP KD YL+++L++ +SAIIF T +++L
Sbjct: 269 ------YQTVSTLIQNYIFIPLIHKDTYLIYLLNEFAG---QSAIIFTRTVNETQRIAIL 319
Query: 324 LEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR 383
L L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP+VD+VLNYD+P+
Sbjct: 320 LRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQ 379
Query: 384 YPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR 443
+ Y+HRVGRTARAG+ G A+S VTQ D+++ IEA +GK+ E+ + EV+ R
Sbjct: 380 DSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGKKQVEYPTVKDEVMVFKPR 439
Query: 444 VYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
V +A+R A + M + E++ K+ K + A G+ + R E ++ G
Sbjct: 440 VEEAQRHARNE-MKNLHEDRGKKGAVLKGRRPAN-GAKRGRDEMDREEG 486
>gi|357121637|ref|XP_003562524.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like
[Brachypodium distachyon]
Length = 447
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 184/410 (44%), Positives = 260/410 (63%), Gaps = 8/410 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ + V C +G + PT +Q IP L+G+D++GL QTGSGKT AFALPI+
Sbjct: 19 TFAELGICKELVDACDSMGWKEPTKIQAGAIPHALQGRDLIGLGQTGSGKTGAFALPIIQ 78
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E A V++PTRELA Q+AEQF+ALGS + L C V+VGG+D + Q S+ RPH
Sbjct: 79 ALLEHRQPFFACVMSPTRELAIQIAEQFEALGSAIGLVCSVLVGGVDRMQQVLSIAKRPH 138
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ TPGR+ L++ ++ K+LVLDEAD++L++ F+E L + + +PK R+T
Sbjct: 139 IVVGTPGRLLDHLKDTKGFS--LNKVKYLVLDEADKLLNLEFKESLDDILKAIPKERRTY 196
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L E + TV+TLKQ++ F+P KD YL+H L+++
Sbjct: 197 LFSATMTKKVAKLQRACLRNPVKVEVSSKYSTVDTLKQEWYFVPAAYKDCYLVHALNELP 256
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
I +IFV TC S LL+L L L +A+++ SQ +RL AL++FK+ IL+
Sbjct: 257 GSMI---MIFVRTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALNKFKAKDFNILIC 313
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAG+ G AVS V Q + IE
Sbjct: 314 TDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGKSGYAVSLVNQYEGQWFKMIE 373
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
A++GK+++ + E++ + +RR+A KL +DG K+R+KQ
Sbjct: 374 ALLGKEIDLRKVDSDEIMILREHISDSRRIALTKLKEDGGH---KKRRKQ 420
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 276/439 (62%), Gaps = 13/439 (2%)
Query: 12 PLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWA 71
P +P T S+ P P E ES L+ + D + + TF LG+ +
Sbjct: 14 PARREPAEATASQTSPDPHTEEES-----VTLDVASTAD--AAEAEEPKTFKELGIVDSL 66
Query: 72 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA 131
+ C+ L + PT +Q IP L+G+DV+GLA+TGSGKTAAFALPIL L E P
Sbjct: 67 CEACESLNYKTPTSIQARSIPVALQGRDVIGLAETGSGKTAAFALPILQALLEKPQPFFG 126
Query: 132 LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKV 191
LV+ PTRELA Q+ + F+ALG+ + LRC V+VGG+D++ QA +L +PH+++ATPGR+
Sbjct: 127 LVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVD 186
Query: 192 LLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQ 251
LE+ K+LV+DEADR+LD+ F + + + +P+ R+T LFSATM+S ++
Sbjct: 187 HLEKTKGFS--LRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTYLFSATMSSKVE 244
Query: 252 TLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIF 310
+L S + A + ++TV TL Q Y+FIP KD YL++++++ +S IIF
Sbjct: 245 SLQRASLRDPARVSVSSNKYQTVSTLLQHYVFIPHKRKDTYLIYLVNEFAG---KSIIIF 301
Query: 311 VSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370
T +++LL L A+ LH SQS RL AL++FK G IL+ATDVA+RGLDI
Sbjct: 302 TRTVFEAQRVAILLRTLGFGAIPLHGQLSQSARLGALNKFKGGSREILVATDVAARGLDI 361
Query: 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430
P VD+VLN+D+P+ + Y+HRVGRTARAG+ G+A+S TQ D+++ IEA +GK+L+++
Sbjct: 362 PAVDVVLNHDLPQDSKTYIHRVGRTARAGKSGIAISIATQYDLEIYQRIEAALGKELDQY 421
Query: 431 ECKEQEVLSDITRVYKARR 449
+ +EV++ +RV +A R
Sbjct: 422 PTEREEVMAFQSRVDEALR 440
>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 517
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 190/411 (46%), Positives = 264/411 (64%), Gaps = 8/411 (1%)
Query: 50 DPNSTTTDSTV-TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
+P +T D TFA LG+ E C+ L + PTP+QT IP LEG+DV+GLA+TGS
Sbjct: 76 EPATTGADEVKKTFADLGVREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGS 135
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKTAAF LPIL L E P + L++ PTRELAYQ+A+Q ALGS ++++C +VGGMD+
Sbjct: 136 GKTAAFVLPILQSLLEKPQPLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDM 195
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ QA +L RPH+V+ATPGR+ LE K++VLDEADR+LD+ F L
Sbjct: 196 VPQAIALSKRPHIVVATPGRLLDHLENTKGFS--LKHLKYMVLDEADRLLDLDFGPVLDK 253
Query: 229 VFQCLPK-NRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + LP+ R T LFSATM+S +++L + N + + V TL Q+Y FIP
Sbjct: 254 ILKVLPREGRHTYLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIPHK 313
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KD+YL+H+L+ +++G IIF T +++LL L A+ LH SQS RL A
Sbjct: 314 YKDLYLVHLLN--DNIG-HPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGA 370
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++FKS IL+ATDVA+RGLDIP VDL++N+D+P + YVHRVGRTARAG+ G AVS
Sbjct: 371 LNKFKSKSRDILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVS 430
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
FVTQ D+++ IE +GK++ E + E + + RV +A+RVA ++ D
Sbjct: 431 FVTQYDLEIWLRIEHALGKKIPEQTFDKDEAMVYMDRVSEAQRVAIREMKD 481
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 286/465 (61%), Gaps = 14/465 (3%)
Query: 24 KPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRP 83
K Q E P+ T++ E+ D + +S TF LG+ + V+ C LG P
Sbjct: 17 KANRQKESSPDESVESTSEPEQEPEEDVTANKAESAKTFKDLGIVDSLVEACDRLGYTNP 76
Query: 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143
TP+Q IP L+ +DV+GLA+TGSGKTAAFALPI+ L + P + LV+ PTRELA Q
Sbjct: 77 TPIQAQSIPHALQNRDVIGLAETGSGKTAAFALPIIQALLDKPSHLFGLVLAPTRELAAQ 136
Query: 144 LAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVF 203
+A F+ALGS ++LR V+VGG+D++ QA +L +PH+V+ATPGR+ LE+
Sbjct: 137 IAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPHIVVATPGRLVDHLEKTKGFS--L 194
Query: 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAY 262
K+LV+DEADR+LD+ F + + + +P+ R+T LFSATM+S +++L S +
Sbjct: 195 RSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLFSATMSSKIESLQRASLRDPVR 254
Query: 263 FYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSL 322
+ +TV TL Q YIF P N KD YL++++++ I ++F T L++
Sbjct: 255 ISISSSSHQTVSTLIQNYIFCPHNKKDTYLVYLVNEYSGKKI---VLFTRTVTETQRLAI 311
Query: 323 LLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIP 382
LL L A+ +H +Q+ RL AL++F++G IL+ATDVA+RGLDIP VD+V+N+DIP
Sbjct: 312 LLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRDILVATDVAARGLDIPLVDVVINFDIP 371
Query: 383 RYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDIT 442
+ YVHRVGRTARAG+ G A++ +TQ D+++ IEA +GK+L E+ ++ EV T
Sbjct: 372 SDSKTYVHRVGRTARAGKSGKAITIMTQYDLEIYLRIEAALGKKLPEYPTQKDEVDVFQT 431
Query: 443 RVYKARRVA--TMKLMDDGFEEK------AKERKKQKLKMLAEKG 479
RV +A+RVA MK M D ++ K K++ M AE+G
Sbjct: 432 RVEEAQRVARIEMKNMMDAKGKRGTAFKGGKGGKRRHDNMDAEEG 476
>gi|365983068|ref|XP_003668367.1| hypothetical protein NDAI_0B00900 [Naumovozyma dairenensis CBS 421]
gi|343767134|emb|CCD23124.1| hypothetical protein NDAI_0B00900 [Naumovozyma dairenensis CBS 421]
Length = 436
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 271/429 (63%), Gaps = 12/429 (2%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
+T TF LGL++W ++ + + +PT +Q+ CIP+IL+G+D +G A+TGSGKT AF
Sbjct: 2 STSKQETFKSLGLSKWLYESLSAMKITQPTAIQSACIPEILKGRDCIGGAKTGSGKTIAF 61
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
A P+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA
Sbjct: 62 AGPMLTKWSEDPCGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVAIVVGGQSIVEQAIQ 121
Query: 175 LMNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L N+PH +IATPGR+ ++ D RTKFLVLDEAD +L F +L L
Sbjct: 122 LQNKPHFIIATPGRLAHHIMNSGEDTVGGLKRTKFLVLDEADSLLTDSFAGDLATCIGAL 181
Query: 234 P--KNRQTLLFSATMTSDLQTLLELSANKA------YFYEAYEGFKTVETLKQQYIFIPK 285
P RQTLLF+AT+T ++TL A Y E+ + TLK +YI +P+
Sbjct: 182 PPKHKRQTLLFTATITDQVRTLENAPAQDGKPSVFTYQVESVDKVAIPSTLKTEYILVPE 241
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
+VK+ YL +L+ E SAIIFV+ + +L L LD +LHS+ Q +R +
Sbjct: 242 HVKEAYLYQLLT-CETYKDSSAIIFVNRAMTAEVLRRTLYHLDVRVASLHSYMPQQERTN 300
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
+LHRF++ A +L+ATDVA+RGLDIP V+LV+NYDIP P ++HR GRTARAGR G A+
Sbjct: 301 SLHRFRANAARVLVATDVAARGLDIPIVELVINYDIPSDPDTFIHRAGRTARAGRSGDAI 360
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEK 463
SFVTQ DV I IE + K+++E + + V+ +T+V KA+R + M + + F E+
Sbjct: 361 SFVTQRDVSRIEAIEERINKKMDESDKVHDTAVIRKALTKVTKAKRESLMAMEKENFGER 420
Query: 464 AKERKKQKL 472
+ ++++ +
Sbjct: 421 QRIQRQKNM 429
>gi|392298981|gb|EIW10076.1| Dbp8p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 431
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 186/421 (44%), Positives = 271/421 (64%), Gaps = 12/421 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ QA L +PH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ ++ D R K+LVLDEAD +L F + L LP RQ
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++L K AY E+ + TLK +YI IP++VK+ YL
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILIPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R ++LHRF++
Sbjct: 244 YQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ D
Sbjct: 303 NAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE + K++ E + + V+ +T+V KA+R + M + + F E+ +++KK+
Sbjct: 363 VSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKK 422
Query: 471 K 471
+
Sbjct: 423 Q 423
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 192/445 (43%), Positives = 274/445 (61%), Gaps = 27/445 (6%)
Query: 48 NPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
NP P S F LG+ + C LG +RPTP+Q IP L+G+D++G+A+TG
Sbjct: 58 NPAPKS--------FRDLGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGRDIIGIAETG 109
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
SGKTAAFALPIL L + P + ALV+ PTRELA Q+ + F+ALGS + LRC +++GG+D
Sbjct: 110 SGKTAAFALPILQALLDKPQPLFALVLAPTRELAAQITQAFEALGSLISLRCALILGGLD 169
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
++ QA +L +PHVV+ATPGR+ LE+ K+LV+DEADR+LD+ F L
Sbjct: 170 MVQQAIALGKKPHVVVATPGRLLDHLEKTKGFS--LRNLKYLVMDEADRLLDMDFGPILE 227
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYE-AYEGFKTVETLKQQYIFIPKN 286
+ + LP+ R+T LFSATM+S +++L S + ++TV TL Q Y+FIP
Sbjct: 228 KILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVSISSSKYQTVATLVQNYLFIPHM 287
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
KD YL+++ ++ I IIF T +++LL L A+ LH SQS RL A
Sbjct: 288 HKDTYLIYLCNEFAGQTI---IIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGA 344
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++F++G IL+ATDVA+RGLDIP VD VLN+D+P+ + YVHRVGRTARAG+ G A+S
Sbjct: 345 LNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAIS 404
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
VTQ D+++ IEA +G +L E+ ++ EV+ RV +A+R AK
Sbjct: 405 IVTQYDIEIWLRIEAALGTKLTEYALEKDEVMVFKPRVEEAQR-------------HAKN 451
Query: 467 RKKQKLKMLAEKGSLKKRSEKRKKS 491
KQ + +KGS+ K + RK++
Sbjct: 452 EMKQLIDERGKKGSVLKGGKGRKRA 476
>gi|323333197|gb|EGA74596.1| Dbp8p [Saccharomyces cerevisiae AWRI796]
Length = 431
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 271/421 (64%), Gaps = 12/421 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ QA L +PH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ ++ D R K+LVLDEAD +L F + L LP RQ
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++L K AY E+ + TLK +YI +P++VK+ YL
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R ++LHRF++
Sbjct: 244 YQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ D
Sbjct: 303 NAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE + K++ E + + V+ +T+V KA+R + M + + F E+ +++KK+
Sbjct: 363 VSRIQAIEDRINKKMTEANKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKK 422
Query: 471 K 471
+
Sbjct: 423 Q 423
>gi|6321963|ref|NP_012039.1| ATP-dependent RNA helicase DBP8 [Saccharomyces cerevisiae S288c]
gi|731740|sp|P38719.1|DBP8_YEAST RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
box protein 8
gi|160380633|sp|A6ZT77.1|DBP8_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
box protein 8
gi|458901|gb|AAB68014.1| Yhr169wp [Saccharomyces cerevisiae]
gi|151944115|gb|EDN62408.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
gi|207344531|gb|EDZ71646.1| YHR169Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273978|gb|EEU08896.1| Dbp8p [Saccharomyces cerevisiae JAY291]
gi|259146927|emb|CAY80183.1| Dbp8p [Saccharomyces cerevisiae EC1118]
gi|285810075|tpg|DAA06862.1| TPA: ATP-dependent RNA helicase DBP8 [Saccharomyces cerevisiae
S288c]
gi|323308784|gb|EGA62022.1| Dbp8p [Saccharomyces cerevisiae FostersO]
gi|323337360|gb|EGA78613.1| Dbp8p [Saccharomyces cerevisiae Vin13]
gi|323348321|gb|EGA82570.1| Dbp8p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354703|gb|EGA86538.1| Dbp8p [Saccharomyces cerevisiae VL3]
gi|349578721|dbj|GAA23886.1| K7_Dbp8p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765263|gb|EHN06775.1| Dbp8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 431
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 271/421 (64%), Gaps = 12/421 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ QA L +PH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ ++ D R K+LVLDEAD +L F + L LP RQ
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++L K AY E+ + TLK +YI +P++VK+ YL
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R ++LHRF++
Sbjct: 244 YQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ D
Sbjct: 303 NAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE + K++ E + + V+ +T+V KA+R + M + + F E+ +++KK+
Sbjct: 363 VSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKK 422
Query: 471 K 471
+
Sbjct: 423 Q 423
>gi|365760297|gb|EHN02027.1| Dbp8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 276/431 (64%), Gaps = 16/431 (3%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
S TTD F LGL++W ++ K + + +PT +Q CIPKILEG+D +G A+TGSGKT
Sbjct: 5 SKTTD----FKSLGLSKWLTESLKAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTI 60
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AFA P+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R VVVGG ++ QA
Sbjct: 61 AFAGPMLTKWSEDPCGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVVVGGESIIQQA 120
Query: 173 KSLMNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
+L +PH +IATPGR+ ++ D R K+LVLDEAD +L F + L
Sbjct: 121 LALQRKPHFIIATPGRLAHHIMSSGEDTVGGLMRAKYLVLDEADILLTSTFADHLATCIG 180
Query: 232 CLPK--NRQTLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFI 283
LP RQTLLF+AT+T +++L + + AY E+ + TLK +YI +
Sbjct: 181 ALPAKDKRQTLLFTATITDQVRSLQDAPVQEGKPPLFAYQVESVDNVAIPSTLKTEYILV 240
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P++VK+ YL +L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R
Sbjct: 241 PEHVKEAYLYQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQER 299
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
++LHRF++ A +L+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G
Sbjct: 300 TNSLHRFRANAARVLIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRNGD 359
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFE 461
A+SFVTQ DV I IE + K++ E + + V+ +T+V KA+R + M + + F
Sbjct: 360 AISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFG 419
Query: 462 EKAKERKKQKL 472
E+ + +K++ +
Sbjct: 420 ERKRLQKQKHI 430
>gi|401840618|gb|EJT43365.1| DBP8-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 437
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 276/431 (64%), Gaps = 16/431 (3%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
S TTD F LGL++W ++ K + + +PT +Q CIPKILEG+D +G A+TGSGKT
Sbjct: 5 SKTTD----FKSLGLSKWLTESLKAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTI 60
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AFA P+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R VVVGG ++ QA
Sbjct: 61 AFAGPMLTKWSEDPCGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVVVGGESIIQQA 120
Query: 173 KSLMNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
+L +PH +IATPGR+ ++ D R K+LVLDEAD +L F + L
Sbjct: 121 LALQRKPHFIIATPGRLAHHIMSSGEDTVRGLMRAKYLVLDEADILLTSTFADHLATCIG 180
Query: 232 CLPK--NRQTLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFI 283
LP RQTLLF+AT+T +++L + + AY E+ + TLK +YI +
Sbjct: 181 ALPAKDKRQTLLFTATITDQVRSLQDAPVQEGKPPLFAYQVESVDNVAIPSTLKTEYILV 240
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P++VK+ YL +L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R
Sbjct: 241 PEHVKEAYLYQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQER 299
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
++LHRF++ A +L+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G
Sbjct: 300 TNSLHRFRANAARVLIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRNGD 359
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFE 461
A+SFVTQ DV I IE + K++ E + + V+ +T+V KA+R + M + + F
Sbjct: 360 AISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFG 419
Query: 462 EKAKERKKQKL 472
E+ + +K++ +
Sbjct: 420 ERKRLQKQKHI 430
>gi|170046083|ref|XP_001850610.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
gi|167868981|gb|EDS32364.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
Length = 516
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/455 (42%), Positives = 278/455 (61%), Gaps = 25/455 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL W + ++LG+RRPTP+Q CIP+IL+G+D +G A+TGSGKT AFALPIL R
Sbjct: 9 FADLGLKPWITKQLEKLGLRRPTPIQQACIPRILDGQDCIGAAKTGSGKTFAFALPILQR 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P AL++TPT ELAYQ+AEQF G + ++ VV GG D L +A+ L RPH+
Sbjct: 69 LSEEPTSNFALILTPTHELAYQIAEQFSVAGQPMGVKVCVVTGGTDQLLEAQRLQARPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F +FLV+DEADRVL F+E+L + + LP+ RQ L
Sbjct: 129 VVAMPGRLAAHLTGCNTYS--FRALQFLVVDEADRVLSGSFDEDLEAIKRFLPEKRQNLF 186
Query: 242 FSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM- 299
FSAT+ + ++ + A A+ + TVETL Q+YI +D+ L+ L K
Sbjct: 187 FSATLKEFMRESSVFPIAGGAFEWSEESEVATVETLDQRYILCADYDRDMVLIETLRKFK 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E+ + IIF ++ + C +LSL L ++ + V LH F Q +R++AL+RFKS IL+
Sbjct: 247 EEKEDANVIIFTNSKKDCQVLSLTLNKIGFDNVCLHGFLRQKERVAALNRFKSKHVRILI 306
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHE 418
ATDVASRGLDIP V LVLN+ +P+ P +Y+HRVGRTARAGR GLA+S F D++ + E
Sbjct: 307 ATDVASRGLDIPNVQLVLNHRLPKVPNEYIHRVGRTARAGRKGLAISIFRFPRDLEFLGE 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK--------------- 463
IEA++ +L E ++ V +V ARR A M L + F+E+
Sbjct: 367 IEALINTKLTEHPVDQRLVERIFMQVSVARREAEMNLDNKDFDERRHNYRRKKWLEQGLD 426
Query: 464 -----AKERKKQKLKMLAEKGSLKKRSEKRKKSGE 493
AK +++Q+ + + K L++ +E RK+ GE
Sbjct: 427 PDEMDAKWKREQEQRKVERKERLRRENEMRKEHGE 461
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/401 (45%), Positives = 262/401 (65%), Gaps = 24/401 (5%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C+ LG + PTP+Q IP L G+D++GLA+TGSGKTAAFALPIL
Sbjct: 60 TFKDLGVIDSLCEACESLGYKSPTPIQQESIPPALAGRDLIGLAETGSGKTAAFALPILQ 119
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + LV+ PTRELAYQ+++ F+ LG + +RC V+VGGMD++TQ+ +L +PH
Sbjct: 120 ALLDKPQPLFGLVLAPTRELAYQISKSFEGLGILISVRCAVIVGGMDMVTQSIALGKKPH 179
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+T
Sbjct: 180 IIVATPGRLLDHLENTKGFS--LRALKYLVMDEADRLLDLDFGPILDKILKVLPRERRTY 237
Query: 241 LFSATMTSDLQTL----------LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LFSATM+S +++L +++S NK ++TV TL Q Y+FIP KD
Sbjct: 238 LFSATMSSKVESLQRASLRDPLRVQISTNK---------YQTVSTLLQSYLFIPHPHKDT 288
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL+++L+ D +SAI+F T L++LL L A+ LH SQS RL AL++F
Sbjct: 289 YLIYLLN---DFAGQSAIVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQSARLGALNKF 345
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
++G IL+ATDVA+RGLDIP+VD+VLNYD+P + Y+HRVGRTARAG+ G A+S VTQ
Sbjct: 346 RAGSREILVATDVAARGLDIPSVDVVLNYDLPPDSKTYIHRVGRTARAGKSGHAISIVTQ 405
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
DV++ IEA +G + E++ + EV+ RV +A+R A
Sbjct: 406 YDVEIWLRIEAALGMKQNEYKYVKDEVMVFKARVEEAQRHA 446
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/437 (42%), Positives = 274/437 (62%), Gaps = 25/437 (5%)
Query: 25 PEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPT 84
PEP E P + + + + P+ T TF LG+ + + C+ LG + PT
Sbjct: 56 PEPAEESTPATNSTEEDSVTLDVAPEQEEVETVKK-TFKDLGIVDALCEACERLGYKNPT 114
Query: 85 PVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144
P+Q IP L+ +D++G+A+TGSGKTAAFALPIL L + P + ALV+ PTRELA Q+
Sbjct: 115 PIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQI 174
Query: 145 AEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS 204
A+ F+ALGS + LRC +++GGMD++TQA +L +PHV++ATPGR+ LE+
Sbjct: 175 AQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFS--LR 232
Query: 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------L 254
++LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L +
Sbjct: 233 SMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKV 292
Query: 255 ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
+S+NK + TV TLK Y+FIP KD YL+++ ++ I IIF T
Sbjct: 293 SVSSNK---------YATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTI---IIFTRTV 340
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
+++LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP VD
Sbjct: 341 LETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILVATDVAARGLDIPNVD 400
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
V+N+D+P+ + YVHRVGRTARAG+ G A+S VTQ D+++ IEA +G +L+E+ ++
Sbjct: 401 CVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKLDEYPLEK 460
Query: 435 QEVLSDITRVYKARRVA 451
EV+ RV +A+R A
Sbjct: 461 DEVMVFKPRVEEAQRHA 477
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/437 (42%), Positives = 274/437 (62%), Gaps = 25/437 (5%)
Query: 25 PEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPT 84
PEP E P + + + + P+ T TF LG+ + + C+ LG + PT
Sbjct: 56 PEPTEESTPATNSTEEDSVTLDVAPEQEEVETVKK-TFKDLGIVDALCEACERLGYKNPT 114
Query: 85 PVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144
P+Q IP L+ +D++G+A+TGSGKTAAFALPIL L + P + ALV+ PTRELA Q+
Sbjct: 115 PIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQI 174
Query: 145 AEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS 204
A+ F+ALGS + LRC +++GGMD++TQA +L +PHV++ATPGR+ LE+
Sbjct: 175 AQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFS--LR 232
Query: 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------L 254
++LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L +
Sbjct: 233 SMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKV 292
Query: 255 ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
+S+NK + TV TLK Y+FIP KD YL+++ ++ I IIF T
Sbjct: 293 SVSSNK---------YATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTI---IIFTRTV 340
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
+++LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP VD
Sbjct: 341 LETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILVATDVAARGLDIPNVD 400
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
V+N+D+P+ + YVHRVGRTARAG+ G A+S VTQ D+++ IEA +G +L+E+ ++
Sbjct: 401 CVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKLDEYPLEK 460
Query: 435 QEVLSDITRVYKARRVA 451
EV+ RV +A+R A
Sbjct: 461 DEVMVFKPRVEEAQRHA 477
>gi|396459541|ref|XP_003834383.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
gi|312210932|emb|CBX91018.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
Length = 516
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/417 (46%), Positives = 265/417 (63%), Gaps = 11/417 (2%)
Query: 47 TNPDPNSTTTD----STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLG 102
T+ P TTT + TFA LG+ E C+ L PTP+QT IP LEG+DV+G
Sbjct: 70 TDAGPIETTTAQADVAKKTFADLGVREELCDACENLKFTTPTPIQTQAIPLALEGRDVIG 129
Query: 103 LAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
LA+TGSGKTAAF LPIL L + P + L++ PTRELAYQ+A+Q ALGS ++++C +
Sbjct: 130 LAETGSGKTAAFVLPILQALLDKPQALFGLILAPTRELAYQIAQQVDALGSIINVKCATL 189
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
VGGMD++ QA +L RPH+V+ATPGR+ LE K++VLDEADR+LD+ F
Sbjct: 190 VGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFS--LKHLKYMVLDEADRLLDLDF 247
Query: 223 EEELRVVFQCLPKN-RQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQY 280
L + + LP++ R T LFSATM+S +++L + N + + V TL Q+Y
Sbjct: 248 GPVLDKILRVLPRDGRHTYLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRY 307
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
+FIP KD+YL+H+L+ +++G IIF T +++LL L A+ LH SQ
Sbjct: 308 LFIPHKHKDLYLIHLLT--DNIG-HPTIIFTRTVNETERIAILLRALGFGAIPLHGQLSQ 364
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
S RL AL++FK+ IL+ATDVASRGLDIP VDLV+N D+P + YVHRVGRTARAG+
Sbjct: 365 SARLGALNKFKTKSRDILVATDVASRGLDIPAVDLVVNLDLPSDSQTYVHRVGRTARAGK 424
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
G A SFVTQ DV++ IE +GK++EE + E L + V +A+RVA ++ D
Sbjct: 425 SGKAFSFVTQYDVEIWLRIEHALGKKIEEEVVDKDEALQYMESVSEAQRVAIREMKD 481
>gi|344303887|gb|EGW34136.1| hypothetical protein SPAPADRAFT_59553 [Spathaspora passalidarum
NRRL Y-27907]
Length = 431
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/414 (44%), Positives = 270/414 (65%), Gaps = 12/414 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LG+A+W ++ + + +PTP+QT CIP IL+G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFSDLGVAKWLSESLIAMKIHQPTPIQTACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ DP G+ L++TPTRELA Q+AEQF ALGS ++++ V+VGG D++TQA +L P
Sbjct: 61 TDWSADPRGIFGLILTPTRELALQIAEQFAALGSNMNIKVSVIVGGEDIVTQALALQRNP 120
Query: 180 HVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KN 236
H VIATPGR+ +L + R K+LVLDEADR+L F +L F+ +P +N
Sbjct: 121 HFVIATPGRLADHVLNSGEETVAGLKRVKYLVLDEADRLLSNSFSSDLERCFKVIPSSEN 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE------TLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L + A + +TV+ +L +Y+F+P VK+
Sbjct: 181 RQTLLFTATVTDAVRALKDAPAKEGKLPVFMHEVETVDKVAIPNSLSIKYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +LS +E ++A+IFV+ + ++ L +L+ +LHS Q++R+++LHRF
Sbjct: 241 YLHSILS-LEQYKDKTAVIFVNRTITAEVICRTLRKLEFRVASLHSQMRQTERINSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIP+V+LV+N+DIP P D++HRVGRTARAGR G AVS V +
Sbjct: 300 KAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRKGDAVSIVGE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE--CKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
DV+ IH IE + K +E E ++ + +T V A+R + M++ GF E
Sbjct: 360 KDVERIHAIEERIVKTMELLEGVSDDRIIKESLTAVSTAKRESMMEMDKQGFGE 413
>gi|344230065|gb|EGV61950.1| DEAD-domain-containing protein [Candida tenuis ATCC 10573]
Length = 448
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 179/436 (41%), Positives = 284/436 (65%), Gaps = 9/436 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+A+W ++ + + +PT +Q CIP++L+GKD +G A+TGSGKT AF LP+LH
Sbjct: 3 TFHELGVADWLCESLNSMKIHKPTSIQAACIPEVLKGKDCIGGAKTGSGKTIAFGLPMLH 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+GV LV+TPTRELA Q+AEQF A+GS +++R +V+VGG D++ QA ++ +PH
Sbjct: 63 KWSEDPFGVYGLVLTPTRELALQIAEQFSAVGSSMNIRVKVIVGGEDMIEQALAIQKKPH 122
Query: 181 VVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNR 237
+IATPGR+ +L D R KFLVLDEADR+L F ++L +F LP K R
Sbjct: 123 FIIATPGRLADHILNSGEDTINGLRRIKFLVLDEADRLLSNSFGKDLDRIFNVLPDSKKR 182
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFY--EAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
QTLLF+AT+T +++L + +K + + E+ + F TL YIF+P VK+ YL V
Sbjct: 183 QTLLFTATVTDAVRSLKD-KNDKVFVHEIESVDKFIIPSTLSLYYIFVPSYVKEAYLNEV 241
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+ ++ + IIFV+ ++ +L +L +L+ +LHS Q++R++++ RFK+ A
Sbjct: 242 LN-LDIYKDKVGIIFVNRTKTAEMLRRMLRKLEFRVTSLHSEMPQTERVNSIQRFKANAA 300
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVASRGLDIP V+ V+N+DIP P D+VHRVGRTARAG+ G +++ V + D++
Sbjct: 301 KILIATDVASRGLDIPNVEFVINFDIPADPDDFVHRVGRTARAGKKGDSITVVGEKDIER 360
Query: 416 IHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
+ IE + +L+ E + +++ D + A+R + +++ ++ F E+ + K++ ++
Sbjct: 361 VLAIEERINDKLKLLEDISDNKLIKDSLKSTSDAKRESLIEMENENFGERRQINKRKHIE 420
Query: 474 MLAEKGSLKKRSEKRK 489
E + K+ K K
Sbjct: 421 RENENSKVMKKRNKPK 436
>gi|190405946|gb|EDV09213.1| dead box protein [Saccharomyces cerevisiae RM11-1a]
Length = 431
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 270/421 (64%), Gaps = 12/421 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ QA L +PH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ ++ D R K+LVLDEAD +L F + L LP RQ
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++L K AY E+ + TLK +YI +P++VK+ YL
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R ++LHRF++
Sbjct: 244 YQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A L+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ D
Sbjct: 303 NAARTLIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE + K++ E + + V+ +T+V KA+R + M + + F E+ +++KK+
Sbjct: 363 VSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKK 422
Query: 471 K 471
+
Sbjct: 423 Q 423
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 260/400 (65%), Gaps = 5/400 (1%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S F LGL +QT + LG + T +Q IP L+ +D++G+A+TGSGKTAAFALP
Sbjct: 29 SETPFNTLGLIPELLQTVEALGYKNATSIQAQAIPSALQDRDIIGVAKTGSGKTAAFALP 88
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL + EDP + A ++ PTRELAYQ+ +QF+ALG+ L +RC +VGG+D++ Q +L
Sbjct: 89 ILQKWWEDPKPLYACILAPTRELAYQIQKQFEALGANLGVRCCCIVGGLDIMAQKVALAK 148
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPH+V+ATPGR++ LE K+LVLDEADR+LD+ F + + + +PK R
Sbjct: 149 RPHIVVATPGRLQDHLENTKGFS--LRSLKYLVLDEADRLLDMDFGPIIDKILKVIPKER 206
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T+LFSATM++ ++ L S E + TV TL+Q Y+F P K+V ++ ++
Sbjct: 207 RTMLFSATMSTKVKRLQRASLVNPVKVEVSSKYSTVSTLQQYYVFGPHMRKEVNMITLVR 266
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +S I+F +T L+L+L L+ A+ LHS SQS RL +L++F++G +
Sbjct: 267 SLSG---KSIIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQSTRLGSLNKFRAGGRQV 323
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP VD+V+NY +P+ +DY+HRVGRTARAGR G A++FVTQ D++
Sbjct: 324 LIATDVAARGLDIPQVDVVINYGVPQNSKDYIHRVGRTARAGRAGKAITFVTQYDIEFHL 383
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE V+GK+++E+ EQE +V +A R A M++ D
Sbjct: 384 RIEEVIGKKMDEWVIPEQEAAMLAEKVEEAGRAAAMEMKD 423
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 175/396 (44%), Positives = 264/396 (66%), Gaps = 6/396 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C+ L +RPT +Q IP L+G+DV+GLA+TGSGKTAAFALPIL
Sbjct: 59 TFKELGIVDSLCEACESLNYKRPTAIQAKAIPVALQGRDVIGLAETGSGKTAAFALPILQ 118
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + LV+ PTRELA Q+ + F+ALG+ + LRC V+VGG+D++ QA +L +PH
Sbjct: 119 ALLEKPQPLFGLVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPH 178
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE+ K+LV+DEADR+LD+ F + + + +P+ R+T
Sbjct: 179 IIVATPGRLVDHLEKTKGFS--LRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTY 236
Query: 241 LFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSAT++S +++L S + + ++TV TL Q YI +P KD YL++++++
Sbjct: 237 LFSATLSSKVESLQRASLRDPVRVSVSSSKYQTVSTLLQHYILVPHKRKDTYLIYLVNEF 296
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+S IIF T +++LL L A+ LH SQS RL AL++FK G IL+
Sbjct: 297 AG---KSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFKGGSREILV 353
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP VD+VLN D+P+ + Y+HRVGRTARAG+ G+A++ VTQ DV++ I
Sbjct: 354 ATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAINIVTQYDVEIYQRI 413
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
EA +GK+L+ + +++EV++ +RV +A+R A +++
Sbjct: 414 EAALGKKLDAYPTEKEEVMAFQSRVEEAQREARIEM 449
>gi|156844185|ref|XP_001645156.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
70294]
gi|160380632|sp|A7TK63.1|DBP8_VANPO RecName: Full=ATP-dependent RNA helicase DBP8
gi|156115814|gb|EDO17298.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 431
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 190/431 (44%), Positives = 270/431 (62%), Gaps = 19/431 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+ W V++ + + PT +Q HCIP+IL+G+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLSQ 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
++DP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA L +PH
Sbjct: 64 WSDDPSGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIVKQALELQKKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ +L ++ SR K+LVLDEAD +L F +L LP + RQ
Sbjct: 124 IIATPGRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIAKLPPKQKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T ++ L A AY E + TLK +Y+ +P++VK+ YL
Sbjct: 184 TLLFTATITDQVRALQNAPAQDSKPPLFAYEVENVDNVAVPSTLKLEYLLVPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ ED S I+FV+ + +L L L+ +LHS QS+R+++L RF++
Sbjct: 244 YQLLT-CEDYKDSSVIVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSERINSLQRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A +L+ATDVA+RGLDIPTV+LV+NYDIP+ P ++HR GRTARAGR G A+SFVT D
Sbjct: 303 NAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRD 362
Query: 413 VDLIHEIEAVVGKQLEEFECKEQE----VLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
V I IE + K+++ ECK+ + +T+V KA+R + M + F EK RK
Sbjct: 363 VSRIEAIEERINKKMD--ECKKVHDTAVIRKALTKVTKAKRESLMDMEKANFGEK---RK 417
Query: 469 KQKLKMLAEKG 479
QK K LAEK
Sbjct: 418 TQKKKNLAEKS 428
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 277/427 (64%), Gaps = 13/427 (3%)
Query: 35 SKNAKTTQLEKFTNPDPNS-TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK 93
SKN+ + +PD + +TT + TF LG+ + + C+ELG PTP+Q CIP
Sbjct: 2 SKNSSRDSSPEEVSPDTETPSTTTAPKTFRELGVIDSLCEACEELGYTAPTPIQERCIPI 61
Query: 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153
LEG+D++GLA+TGSGKTAAF LP+L L + P +L++ PTRELA Q+A +ALG+
Sbjct: 62 ALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTRELAQQIAHTVEALGA 121
Query: 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVL 211
+ +RC +++GGMD+++QA +L +PHV++ATPGR+ LE FS RT K+LVL
Sbjct: 122 RISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKG----FSLRTLKYLVL 177
Query: 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK 271
DEADR+LD+ F L + + LPK R+T LFSATM+S +++L S + +
Sbjct: 178 DEADRLLDLDFGPILDKLLRLLPK-RKTYLFSATMSSKVESLQRASLSDPVRVSVSTKNQ 236
Query: 272 TVETLKQQYIFIPKNVKDVYLMHVLS-KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE 330
T L Q Y+FIP KD YL+++L+ + MG IIF T LS++L L
Sbjct: 237 TASKLLQSYLFIPHKFKDFYLVYLLNERAGQMG----IIFTRTVHETQRLSIMLRNLGFP 292
Query: 331 AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVH 390
A+ +H SQS RL++L++F++ +L+ATDVA+RGLDIP VD VLNYD+P+ + Y+H
Sbjct: 293 AIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIH 352
Query: 391 RVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRV 450
RVGRTARAG+ G+A SFVTQ +V+L IE +GK++EE++ ++ EV+ RV A+RV
Sbjct: 353 RVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEEYKPEKDEVMIFAERVNDAQRV 412
Query: 451 ATMKLMD 457
A + + D
Sbjct: 413 AALTMRD 419
>gi|157107875|ref|XP_001649978.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108868632|gb|EAT32857.1| AAEL014904-PA [Aedes aegypti]
Length = 526
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 193/461 (41%), Positives = 277/461 (60%), Gaps = 27/461 (5%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+ S F+ LGL W +LG+RRPTP+Q CIP+IL+G+D +G A+TGSGKT AFA
Sbjct: 3 SKSDKKFSDLGLKPWIANQMDKLGLRRPTPIQEACIPRILDGQDCIGAAKTGSGKTFAFA 62
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPIL RL+E+P ALV+TPT ELAYQ+AEQF G + ++ V+ GG D L +A+ L
Sbjct: 63 LPILQRLSEEPTSNFALVLTPTHELAYQIAEQFSVAGQPMSVKVCVITGGTDQLLEAQRL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+RPH+V+A PGR+ L F +FLV+DEADRVL F+E+L + LPK
Sbjct: 123 QSRPHIVVAMPGRLASHLTGCNTYS--FRAMQFLVVDEADRVLSGSFDEDLAAIDSFLPK 180
Query: 236 NRQTLLFSATMTSDLQ--TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
RQ L FSAT+ ++ ++ + A+ + E E TVETL Q+YI +D+ L+
Sbjct: 181 KRQNLFFSATLKEFMRENSVFPIGADAFEWSEESE-VATVETLDQRYILCADYDRDMVLI 239
Query: 294 HVLSKM-EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
L K ED S +IF ++ + C +LS+ L + + V LH F Q +R++AL+RFKS
Sbjct: 240 ETLRKFKEDNEEASVMIFTNSKKDCQVLSMTLNTIGFDNVCLHGFLRQKERVAALNRFKS 299
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQN 411
+L+ATDVASRGLDIP V LVLN+ +P+ P +Y+HRVGRTARAGR GLA+S F
Sbjct: 300 KHVRVLIATDVASRGLDIPNVQLVLNHRLPKIPNEYIHRVGRTARAGRKGLAISIFRFPR 359
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK-------- 463
D++ + EIE+++ +L E ++ V +V ARR A M L + F+E+
Sbjct: 360 DLEFLGEIESLINTKLTEHPIDQRLVERIFMQVSVARREAEMNLDNKDFDERQHNYRRKK 419
Query: 464 ------------AKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
AK +++++ + K L+K +E RK++
Sbjct: 420 WIEQGLDPDEMEAKWKQEKETRAAERKERLRKENEDRKRAA 460
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 191/413 (46%), Positives = 258/413 (62%), Gaps = 13/413 (3%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTV-TFAGLGLAEWAVQTCK 76
K K+ K E + + E SKN E + T +S V +F+ L L ++T
Sbjct: 49 KQKSAEKQEKREKREERSKNEAKQDSE---DTSKEVTVEESKVESFSELNLIPELLETIN 105
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVI 134
E+ +PTP+Q IP LEGKD++GLAQTGSGKTAAFA+PIL L A+ PY LV+
Sbjct: 106 EMKFTKPTPIQAEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWDAQTPY--FGLVL 163
Query: 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE 194
PTRELAYQ+ E F ALGS + LR +VGGMD++ QA+ LM RPH+++ATPGRI LE
Sbjct: 164 APTRELAYQIKETFDALGSSMGLRTVCIVGGMDMMDQARDLMRRPHILVATPGRIMDHLE 223
Query: 195 EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254
K+LV+DEADR+LD+ F L + + +P R T LFSATMTS ++ L
Sbjct: 224 HTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKVIPTQRTTYLFSATMTSKVEKLQ 281
Query: 255 ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
S + ++T + L Q + + K+ YL+H+L+ E +G +S I+F TC
Sbjct: 282 RASLHNPVKVAVSTKYQTADNLVQSMMLVSDGYKNTYLIHLLN--EFVG-KSIIVFTRTC 338
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
SLL L AV LH SQSQRL +L++FKSG++ IL+ATDVA+RGLDIP+VD
Sbjct: 339 AHSQRTSLLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKSNILVATDVAARGLDIPSVD 398
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQL 427
+V+NYDIP + Y+HRVGRTARAG+ G ++S VTQ D++L IE V+GK+L
Sbjct: 399 VVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLRIENVLGKKL 451
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 179/407 (43%), Positives = 275/407 (67%), Gaps = 28/407 (6%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C+ L + PTP+Q IP L+G+D++GLA+TGSGKTAAFALP+L
Sbjct: 66 TFKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQ 125
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + LV+ PTRELA Q+ + F+ALGS + LRC V+VGG+D++ QA +L +PH
Sbjct: 126 ALLDKPQPLFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPH 185
Query: 181 VVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
+++ATPGR+ LE+ FS RT K+L++DEADR+LD+ F + + + +P+ R+
Sbjct: 186 IIVATPGRLVDHLEKTKG----FSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERR 241
Query: 239 TLLFSATMTSDLQTL----------LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
T LFSAT++S +++L + +S+NK ++TV TL Q Y+FIP K
Sbjct: 242 TYLFSATLSSKIESLQRASLRDPVRVSISSNK---------YQTVSTLIQHYMFIPFPQK 292
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++++ E G +S I+F T +++LL L A+ LH SQS RL AL+
Sbjct: 293 DTYLVYLVN--EHTG-KSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALN 349
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F++G IL+ATDVA+RGLDIP VD+VLNYD+P+ + Y+HRVGRTARAG+ G+A++ V
Sbjct: 350 KFRAGTRDILVATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLV 409
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
TQ D+++ IEA +GK+L E+ +++EV++ +R+ +A+R A +++
Sbjct: 410 TQYDLEIYARIEAALGKKLTEYPSEKEEVMTFQSRIQEAQRHARIEM 456
>gi|367016345|ref|XP_003682671.1| hypothetical protein TDEL_0G00930 [Torulaspora delbrueckii]
gi|359750334|emb|CCE93460.1| hypothetical protein TDEL_0G00930 [Torulaspora delbrueckii]
Length = 436
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 190/433 (43%), Positives = 264/433 (60%), Gaps = 15/433 (3%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S TF LGL W V + + +PT +Q CIP I++G D +G A+TGSGKT AFA P
Sbjct: 5 SVSTFKSLGLPRWLVDALSAMRITQPTSIQKGCIPAIMKGGDCIGGAKTGSGKTIAFAAP 64
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA L
Sbjct: 65 MLTKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSIVVGGESIVKQALELQR 124
Query: 178 RPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-- 234
+PH +IATPGR+ +L D R KFLVLDEAD +L F ++L V LP
Sbjct: 125 KPHFIIATPGRLAHHILNSGEDTVGGLMRAKFLVLDEADSLLTSTFAKDLNVCVSALPPK 184
Query: 235 KNRQTLLFSATMTSDLQTLLELSA--NKAYFY----EAYEGFKTVETLKQQYIFIPKNVK 288
RQTLLF+AT+T ++ L + + NK Y E + TLK +YI IP+ VK
Sbjct: 185 DKRQTLLFTATITDQVRALQDAPSQENKPPLYCYEVENVDNVAVPSTLKTEYILIPEYVK 244
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL H+L+ E+ SAIIFV+ + ++ L+ LD +LHS Q +R ++L
Sbjct: 245 EAYLYHLLTS-EEYKDSSAIIFVNRTMTAEIMRRTLKNLDIRVASLHSQMPQQERTNSLQ 303
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A +L+ATDVASRGLDIP V+LV+NYDIP P Y+HR GRTARAGR G A+SF+
Sbjct: 304 RFRANAARVLIATDVASRGLDIPVVELVVNYDIPSDPDVYIHRSGRTARAGRRGDAISFI 363
Query: 409 TQNDVDLIHEIEAVVGKQLEE--FECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
TQ D+ I IE + K++EE + + +V KA+R + M + + F E+
Sbjct: 364 TQRDISRIEAIETRINKKMEECTLVGDTAVIRKSLNKVTKAKRESLMAMEKENFGER--- 420
Query: 467 RKKQKLKMLAEKG 479
RK Q+ K + +KG
Sbjct: 421 RKIQRQKNMNQKG 433
>gi|115454521|ref|NP_001050861.1| Os03g0669000 [Oryza sativa Japonica Group]
gi|75327677|sp|Q7Y183.1|RH10_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|31126733|gb|AAP44655.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|53370642|gb|AAU89137.1| DEAD/DEAH box helicase domain containing protein [Oryza sativa
Japonica Group]
gi|108710302|gb|ABF98097.1| ATP-dependent RNA helicase DDX47, putative, expressed [Oryza sativa
Japonica Group]
gi|113549332|dbj|BAF12775.1| Os03g0669000 [Oryza sativa Japonica Group]
gi|125545183|gb|EAY91322.1| hypothetical protein OsI_12939 [Oryza sativa Indica Group]
gi|215695397|dbj|BAG90588.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 472
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/411 (44%), Positives = 259/411 (63%), Gaps = 10/411 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ V C +G + PT +Q IP LEG+D++GL QTGSGKT AFALPI+
Sbjct: 42 TFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQ 101
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L + P + A V++PTRELA+Q+ +QF+ALGS + L C V+VGG+D + QA SL R
Sbjct: 102 ALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKR 161
Query: 179 PHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
PH+V+ TPGR LL+ D ++ K+LVLDEAD++L+V F++ L + +PK R
Sbjct: 162 PHIVVGTPGR---LLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKER 218
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T LFSATMT+ + L E + TV+TL+Q++ F+P + KD +L+HVL+
Sbjct: 219 RTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLN 278
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ I +IFV TC S LL+L L L +A+++ SQ +RL AL+RFK+ I
Sbjct: 279 ELPGSMI---MIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNI 335
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAG G AVS V Q +
Sbjct: 336 LICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFK 395
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++G ++ + + E++ R+ ++R+A + M +G K K RK
Sbjct: 396 MIEKLLGYEIPDRKVDNAEIMILRERISDSKRIA-LTTMKEGGGHKKKRRK 445
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 269/419 (64%), Gaps = 10/419 (2%)
Query: 4 QILLDRNFPLFAKPKSKTRSKPEPQPEPEPE-SKNAKTTQLEKFTNPDPNSTTTDSTVTF 62
Q L R A+P S T+S PE E S++ T++ + +P T +T +F
Sbjct: 2 QALKKRKLAHAARPDS-TKSNPETSGSKSVEQSQDQLTSEAGEQGAKNPQEET--ATKSF 58
Query: 63 AGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL 122
LG+ + + C+ LG + PTP+QT IP L+G+D++GLA+TGSGKTAAFALPIL L
Sbjct: 59 KDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQAL 118
Query: 123 AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVV 182
+ P + LV+ PTRELAYQ++E F+ALGS + +RC V+VGGMD++ QA +L +PH++
Sbjct: 119 MDKPQSLFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHII 178
Query: 183 IATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLF 242
+ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+T LF
Sbjct: 179 VATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLF 236
Query: 243 SATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
SATM+S +++L S +N + ++TV TL Q ++FIP KD+YL+++L++
Sbjct: 237 SATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKDIYLVYLLNEFAG 296
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+SAIIF T L++LL L A+ LH SQS RL AL +F+S IL+AT
Sbjct: 297 ---QSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILVAT 353
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
DVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A SFVTQ D+++ IE
Sbjct: 354 DVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEVWLRIE 412
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/452 (41%), Positives = 290/452 (64%), Gaps = 21/452 (4%)
Query: 9 RNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLA 68
R+ P+ + P++ P EPE S ++ L++ + ++ TF LG+
Sbjct: 17 RHVPMSSPPRA-------PSSEPEASSDQEESATLDEAALEESDTQPK----TFKQLGIV 65
Query: 69 EWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG 128
+ + C+ L + PTP+Q IP L+ +D++GLA+TGSGKTAAFALPIL L + P
Sbjct: 66 DSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQALLDKPQP 125
Query: 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGR 188
+ LV+ PTRELA+Q+ + F+ALGS + LRC V+VGG+D++ QA +L +PH+++ATPGR
Sbjct: 126 LFGLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATPGR 185
Query: 189 IKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246
+ LE+ FS RT K+LV+DEADR+LD+ F + + + +P+ R+T LFSAT+
Sbjct: 186 LVDHLEKTKG----FSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLFSATL 241
Query: 247 TSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
+S +++L S + + ++TV TL Q + IP+ KD YL++++++ +
Sbjct: 242 SSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMRKDTYLIYLVNEFTG---K 298
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S IIF T +++LL L A+ LH SQS RL AL++F+SG IL+ATDVA+
Sbjct: 299 STIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAA 358
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDI VD+VLNYD+P+ + Y+HRVGRTARAG+ G+A+S VTQ D+++ IEA +GK
Sbjct: 359 RGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQRIEAALGK 418
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
+L+ + +++EVL+ RV +A+R A +++ +
Sbjct: 419 KLDIYPTEKEEVLAFQHRVEEAQRHARIEMKN 450
>gi|68487950|ref|XP_712192.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
gi|68488947|ref|XP_711718.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
gi|74656119|sp|Q59PR3.1|DBP8_CANAL RecName: Full=ATP-dependent RNA helicase DBP8
gi|46433039|gb|EAK92496.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
gi|46433563|gb|EAK92999.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
gi|238880002|gb|EEQ43640.1| hypothetical protein CAWG_01884 [Candida albicans WO-1]
Length = 440
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/441 (43%), Positives = 278/441 (63%), Gaps = 14/441 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+A+W ++ + + PT +Q+ CIP IL+G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDP+G+ L++TPTRELA Q+AEQF ALG+ ++++ VVVGG D + Q +L +P
Sbjct: 61 TQWSEDPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN-- 236
H VIATPGR+ +L + R K+LVLDEADR+L F +L+ F LP +
Sbjct: 121 HFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDK 180
Query: 237 RQTLLFSATMTSDLQTLLE---LSANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L E F E V TL+ Y+F+P VK+
Sbjct: 181 RQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L +E +A+IFV+ + +L +L +LD +LHS QS+R ++LHRF
Sbjct: 241 YLNSIL-HLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIPTV+LV+N+DIP P D++HRVGRTARAGR G AVS + +
Sbjct: 300 KAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAK-ER 467
D+D I IE + K++E E + V+ + ++ A+R + M++ + F E+ K R
Sbjct: 360 KDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERKKINR 419
Query: 468 KKQKL-KMLAEKGSLKKRSEK 487
KK L K+ E+ + K+S+K
Sbjct: 420 KKHGLDKVKPERVTKPKKSKK 440
>gi|255721753|ref|XP_002545811.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
gi|240136300|gb|EER35853.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
Length = 440
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 187/427 (43%), Positives = 270/427 (63%), Gaps = 13/427 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+A+W + + + +PT +Q+ CIP+IL+G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFNELGVAKWLSEALDAMKIYKPTSIQSACIPQILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDPYGV LV+TPTRELA Q+AEQF ALGS ++++ V+VGG D++ QA L +P
Sbjct: 61 TQWSEDPYGVFGLVLTPTRELALQIAEQFTALGSNMNIKVSVIVGGEDIVKQALELQKKP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KN 236
H VIATPGR+ +L + R K+LVLDEADR+L F +L+ F LP +
Sbjct: 121 HFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLKRCFDVLPPSEK 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKA---YFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L E + F E V TL Y+F+P VK+
Sbjct: 181 RQTLLFTATITDAVRALKEKPQTEGKPPVFMHEVETVDKVAIPSTLSISYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L+ +E +A++FV+ + +L L +LD +LHS Q++R ++LHRF
Sbjct: 241 YLNSILN-LEKFKDATAVVFVNRTITAEVLRRTLRKLDFRVASLHSEMPQAERTNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIPTV+LV+N+DIP P D++HRVGRTARAGR G AVS + +
Sbjct: 300 KAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAVSIIGE 359
Query: 411 NDVDLIHEIEAVVGKQLE--EFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK-ER 467
D+D I IE + K++E E ++ + + A+R + M++ + F E+ K R
Sbjct: 360 KDIDRIQSIEERINKKMELLEDVDDDKVIKDSLNVTTAAKRESMMEMDKENFGERKKINR 419
Query: 468 KKQKLKM 474
KK L++
Sbjct: 420 KKHGLEL 426
>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
Length = 470
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/398 (45%), Positives = 263/398 (66%), Gaps = 8/398 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LGL E + C+ G + P+ +Q IP L G+DV+GLA+TGSGKT AFALP+L
Sbjct: 31 SFSDLGLTEVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQ 90
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + AL++TPTRELAYQ++E F+ LG + ++C V+VGGMD+++QA L +PH
Sbjct: 91 ALLEKPQRLFALILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPH 150
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--NRQ 238
+++ATPGR+ +E K+L++DEADR+L++ FE E+ + LP+ R+
Sbjct: 151 IIVATPGRLIDHMENTKGFD--LRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEGRK 208
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
+LFSATMT + L S E ++TV+ L Q Y+FIP K++YL+H++++
Sbjct: 209 NMLFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIINE 268
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ S IIF STC L+LLL L A+ L+ SQ++RL++L++FK+ +IL
Sbjct: 269 LAG---NSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSIL 325
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP VD+V+NYDIP + +DY+HRVGRTARAGR G A++FV Q DV+L
Sbjct: 326 IATDVASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQR 385
Query: 419 IEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKL 455
IE ++GK+L + E+EV+ RV +A R A M++
Sbjct: 386 IETLIGKKLPLYSSATEEEVMVLADRVNEAVRFAKMEI 423
>gi|357116154|ref|XP_003559848.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like
[Brachypodium distachyon]
Length = 449
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/408 (44%), Positives = 257/408 (62%), Gaps = 6/408 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ V C +G + PT +Q IP L+G+D++GL QTGSGKT AFALPI+
Sbjct: 19 TFAELGICRELVDACDAMGWKEPTKIQAGAIPHALQGRDLIGLGQTGSGKTGAFALPIIQ 78
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E A V++PTRELA Q+AEQF+ALGS + L C V+VGG+D + Q S+ RPH
Sbjct: 79 ALLEHRRPFFACVMSPTRELAIQIAEQFEALGSAIGLVCSVLVGGVDRMQQVLSIAKRPH 138
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+ TPGR+ L++ ++ K+LVLDEAD++L++ F+E L + + +PK R+T
Sbjct: 139 IVVGTPGRLLDHLKDTKGFS--LNKVKYLVLDEADKLLNLEFKESLDDILKAIPKERRTY 196
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L E + TV+TLKQ++ F+P KD YL+H L+++
Sbjct: 197 LFSATMTKKVSKLQRACLRNPAKVEVSSKYSTVDTLKQEWYFVPAAYKDCYLVHALNELP 256
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
I +IFV TC S LL+L L L +A+++ SQ +RL AL++FK+ IL+
Sbjct: 257 GSMI---MIFVRTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALNKFKAKDFNILIC 313
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDI VD V+NYDIP +DY+HRVGRTARAG+ G AVS V Q + + IE
Sbjct: 314 TDVASRGLDIQGVDAVINYDIPMNSKDYIHRVGRTARAGKSGYAVSLVNQYETEWFKMIE 373
Query: 421 AVVGKQLEE-FECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
A++GK++ + + E++ + +RR+A KL +DG +K + +
Sbjct: 374 ALLGKKIGDPRKVDADEIMILREHISDSRRIALTKLKEDGGSKKRRRK 421
>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 477
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/410 (45%), Positives = 258/410 (62%), Gaps = 7/410 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L ++ + + +PTP+Q IP LEGKDV+GLA TGSGKTAAFA+PIL
Sbjct: 66 SFTELKLIPELLEAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQ 125
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L D LV++PTRELAYQ+ + F ALGSG+ LR +VGGMD++ QA+ LM +PH
Sbjct: 126 SLWHDQLPYYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMRKPH 185
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
V++ATPGRI LE K+LV+DEADR+LD+ F EL + + +P+ R T
Sbjct: 186 VIVATPGRIVDHLEHTKGFS--LKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNTY 243
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ ++ L S N ++T + L Q + + K+ YL+H+L+ E
Sbjct: 244 LFSATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGYKNTYLVHLLN--E 301
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+G +S IIF TC +LL L AV LH SQSQRL +L++FKSG+A IL+A
Sbjct: 302 FVG-KSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKANILVA 360
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP VD+V+NYDIP + Y+HRVGRTARAGR G ++S VTQ D+++ IE
Sbjct: 361 TDVAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYDLEMYLRIE 420
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVA-TMKLMDDGFEEKAKERKK 469
AV+ K+L + ++VL D V+ R A +K D E+K K++ +
Sbjct: 421 AVLQKKLPKDPAPPKDVL-DALHVHVDRATAEAIKQTKDFHEKKGKKKSR 469
>gi|125587400|gb|EAZ28064.1| hypothetical protein OsJ_12029 [Oryza sativa Japonica Group]
Length = 472
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 181/434 (41%), Positives = 266/434 (61%), Gaps = 9/434 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ V C +G + PT +Q IP LEG+D++GL QTGSGKT AF LPI+
Sbjct: 42 TFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFGLPIIQ 101
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L + P + A V++PTRELA+Q+ +QF+ALGS + L C V+VGG+D + QA SL R
Sbjct: 102 ALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKR 161
Query: 179 PHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
PH+V+ TPGR LL+ D ++ K+LVLDEAD++L+V F++ L + +PK R
Sbjct: 162 PHIVVGTPGR---LLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKER 218
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T LFSATMT+ + L E + TV+TL+Q++ F+P + KD +L+HVL+
Sbjct: 219 RTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLN 278
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ I +IFV TC S LL+L L L +A+++ SQ +RL AL+RFK+ I
Sbjct: 279 ELPGSMI---MIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNI 335
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAG G AVS V Q +
Sbjct: 336 LICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFK 395
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IE ++G ++ + + E++ R+ ++R+A + + G +K + + + +
Sbjct: 396 MIEKLLGYEIPDRKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRKNEDDEEEEER 455
Query: 478 KGSLKKRSEKRKKS 491
+ ++S+ KS
Sbjct: 456 NAPVSRKSKSFNKS 469
>gi|241958758|ref|XP_002422098.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223645443|emb|CAX40099.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 440
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 267/425 (62%), Gaps = 13/425 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+A W ++ + + PT +Q+ CIP IL+G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFNDLGVARWLSESLDAMKIYTPTSIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
R +EDP+G+ L++TPTRELA Q+AEQF ALG+ ++++ VVVGG D + Q +L +P
Sbjct: 61 TRWSEDPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN-- 236
H VIATPGR+ +L + R K+LVLDEADR+L F +L+ F LP +
Sbjct: 121 HFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPPSDK 180
Query: 237 RQTLLFSATMTSDLQTLLE---LSANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L E F E V TL+ Y+F+P VK+
Sbjct: 181 RQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L +E +A+IFV+ + +L +L +LD +LHS QS+R ++LHRF
Sbjct: 241 YLNSIL-HLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIPTV+LV+N+DIP P D++HRVGRTARAGR G AVS + +
Sbjct: 300 KAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAK-ER 467
D+D I IE + K++E E + V+ + ++ A+R + M++ + F E+ K R
Sbjct: 360 KDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERKKINR 419
Query: 468 KKQKL 472
KK L
Sbjct: 420 KKHGL 424
>gi|380492419|emb|CCF34618.1| ATP-dependent rRNA helicase RRP3 [Colletotrichum higginsianum]
Length = 481
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 176/407 (43%), Positives = 267/407 (65%), Gaps = 24/407 (5%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + C LG +PTP+Q IP L +D++GLA+TGSGKTAAFALP+
Sbjct: 51 TKSFKDLGVVDSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPV 110
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
+ L E P LV+ PTRELA Q+ +QF+ALGS + LR V+VGG+D++ QA +L +
Sbjct: 111 IQALLEKPQAFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKK 170
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHV+IATPGR+ LE+ K+LV+DEADR+LD+ F + + + +P+ R+
Sbjct: 171 PHVIIATPGRLVDHLEKTKGFS--LRSLKYLVMDEADRLLDMDFGPSIDKILKFVPRERR 228
Query: 239 TLLFSATMTSDLQTL----------LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
T LFSATM+S +++L + +S+NK ++TV TL Q Y+FIP K
Sbjct: 229 TFLFSATMSSKIESLQRASLRDPVRVSISSNK---------YQTVSTLLQYYLFIPHTQK 279
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
DV+L+++L+ E G + +IF T L++LL L A+ LH +Q+ RL AL+
Sbjct: 280 DVHLIYLLN--EHAG-KKIMIFTRTVAETQRLAILLRSLGFGAIPLHGQLNQTARLGALN 336
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F++G +IL+ATDVA+RGLD+P VD+V+N+D+P+ + ++HR+GRTARAG+ G+A+S V
Sbjct: 337 KFRTGTRSILVATDVAARGLDVPAVDVVVNHDLPQDSKTFIHRIGRTARAGKSGIALSLV 396
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
TQ D+++ IEA +GK+L+E+ ++ EV+ RV +A+R A M++
Sbjct: 397 TQYDLEIFLRIEAALGKKLDEYPTQKDEVMVFQNRVEEAQRHARMEM 443
>gi|410076594|ref|XP_003955879.1| hypothetical protein KAFR_0B04480 [Kazachstania africana CBS 2517]
gi|372462462|emb|CCF56744.1| hypothetical protein KAFR_0B04480 [Kazachstania africana CBS 2517]
Length = 435
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 189/433 (43%), Positives = 275/433 (63%), Gaps = 15/433 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL++W + + + + + +PT +Q+HCIP+IL+G+D +G A+TGSGKT FA P+L
Sbjct: 6 SFKQLGLSKWLLDSLRAMKITQPTTIQSHCIPEILKGRDCIGGAKTGSGKTITFAAPMLA 65
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
R +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R ++VGG ++ QA L +PH
Sbjct: 66 RWSEDPCGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVALIVGGESIVNQAIELQRKPH 125
Query: 181 VVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KN-R 237
+IATPGR+ +L D R K+LVLDEAD +L+ F ++L LP KN R
Sbjct: 126 FIIATPGRLAHHILNSGEDTVGGLKRAKYLVLDEADFLLNDTFAKDLSTCIGALPDKNAR 185
Query: 238 QTLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
QTLLF+AT+T ++ L A AY E+ + TLK +YI IP++VK+ Y
Sbjct: 186 QTLLFTATITDQVRALQNAPAKGGKLPIFAYQVESVDKVAIPSTLKVEYILIPEHVKEAY 245
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +L+ E+ + IIFV+ + +L L+ LD +LHS SQ +R ++LHRF+
Sbjct: 246 LYQLLT-CENYINSNVIIFVNRTATAEVLRKTLKHLDLRVASLHSQMSQQERTNSLHRFR 304
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+ A IL+ATDVASRGLDIPTV+LV+NYDIP P Y+HR GRTARAG+ G A+SF+T
Sbjct: 305 ANAARILIATDVASRGLDIPTVELVVNYDIPSDPDTYIHRSGRTARAGKSGDAISFITPR 364
Query: 412 DVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKK 469
DV I IE + K++ E + + V+ + +V KA+R + M++ + F E+ RK
Sbjct: 365 DVSRIAAIEERINKKMTECDKVHDTAVIRKALVKVTKAKRESLMEMEKENFGER---RKI 421
Query: 470 QKLKMLAEKGSLK 482
Q+ K + SL+
Sbjct: 422 QRRKNMMNDKSLR 434
>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 480
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/447 (40%), Positives = 281/447 (62%), Gaps = 28/447 (6%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTH 89
+ P S A ++E D + T S F LG+A+ C LG +PTP+Q
Sbjct: 25 DSSPASSVASQPEVEGGVTADASEEVTKS---FKDLGVADSLCDACANLGYTKPTPIQAQ 81
Query: 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149
IP L +D++GLA+TGSGKTAAFALP++ L E P LV+ PTRELA Q+ +QF+
Sbjct: 82 SIPHALANRDIIGLAETGSGKTAAFALPVIQALLEKPQAFFGLVLAPTRELAAQIGQQFE 141
Query: 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209
ALGS + LR V+VGG+D++ QA +L +PHV++ATPGR+ LE+ K+L
Sbjct: 142 ALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIVATPGRLVDHLEKTKGFS--LRSLKYL 199
Query: 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------LELSAN 259
V+DEADR+LD+ F + + + +P+ R+T LFSATM+S +++L + +S+N
Sbjct: 200 VMDEADRLLDMDFGPSIDKILKFIPRERRTFLFSATMSSKIESLQRASLRDPVRVSISSN 259
Query: 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319
K ++TV TL Q Y+FIP +KD YL+++ ++ + ++F T
Sbjct: 260 K---------YQTVSTLLQYYLFIPHQLKDTYLVYLANEFAG---KKLVVFTRTVSETQR 307
Query: 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
L++LL L A+ LH +Q+ RL AL++F++G+ +IL+ATDVA+RGLDIP VD+V+N+
Sbjct: 308 LAILLRTLGFGAIPLHGQLNQTARLGALNKFRAGERSILVATDVAARGLDIPLVDVVINH 367
Query: 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLS 439
D+ + + +VHR+GRTARAG+ G+A+S VTQ D+++ IEA +GK+ +E+ +++EV+
Sbjct: 368 DLAQDSKTHVHRIGRTARAGKSGIALSLVTQYDLEIWLRIEAALGKKQDEYPTQKEEVMV 427
Query: 440 DITRVYKARRVATMKLMDDGFEEKAKE 466
+RV +A+R A M+ M + E K K+
Sbjct: 428 FQSRVEEAQRHARME-MKNLMETKGKK 453
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 205/480 (42%), Positives = 292/480 (60%), Gaps = 20/480 (4%)
Query: 17 PKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTV-TFAGLGLAEWAVQTC 75
PK K E + E P++ ++ T P+ST + TF LG+ + + C
Sbjct: 16 PKLKEAGGQEQRQEQSPQTDDSATVVDAAAV---PSSTAAEVPAKTFKDLGIVDPLCEAC 72
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135
+ LG ++PTP+QT IP L+G+DV+G+A+TGSGKTAAFALPIL L + P + LV+
Sbjct: 73 EALGYKQPTPIQTQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLDKPQPLFGLVLA 132
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELA Q+ + F+ALGS + LRC VVVGG+D+++Q+ +L +PHVV+ATPGR+ LE+
Sbjct: 133 PTRELAAQIGQAFEALGSLISLRCAVVVGGLDMVSQSIALGKKPHVVVATPGRLLDHLEK 192
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L
Sbjct: 193 TKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKFLPRERRTYLFSATMSSKVESLQR 250
Query: 256 LSANKAYFYE-AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
S + + KTV TL Q + IP KDVYL++++++ ++ IIF T
Sbjct: 251 ASLRDPLRVSVSSKREKTVATLLQNPLIIPHMHKDVYLIYLVNEFAG---QTTIIFTRTV 307
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
LS+LL L A+ LH SQS RL AL++FK+ IL+ATDVA+RGLDIP VD
Sbjct: 308 NEAQRLSILLRTLSFGAIPLHGQLSQSMRLGALNKFKAKSRDILVATDVAARGLDIPEVD 367
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE--AVVGKQLEEFEC 432
LV+NYD+P Y+HRVGRTARAGR G A+S VTQ DV+L IE A+ G++L ++
Sbjct: 368 LVINYDLPGDSMTYIHRVGRTARAGRSGRAISIVTQYDVELWMRIEKAALDGRKLPTYQP 427
Query: 433 KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
+EV+ RV +A+RVA + M + E++ K K KG + + KR+ G
Sbjct: 428 DREEVMVFKERVEEAQRVARNE-MKELHEDRGK-------KGAVLKGRKRGSATKRRHDG 479
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 190/442 (42%), Positives = 277/442 (62%), Gaps = 19/442 (4%)
Query: 31 PEPESKNAKTTQLEKFTNP-----DPN----STTTDSTV--TFAGLGLAEWAVQTCKELG 79
P+P +K+A +N DPN S+ T+ + TF LGL + + C ++G
Sbjct: 32 PQPTAKDADVEDGASDSNTQPTADDPNVDGASSETEPSAPKTFKELGLIDSLCEACDKMG 91
Query: 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139
+ PTP+Q+ IP L+G+D++GLA+TGSGKTA+F LPIL L E P LV+ PTRE
Sbjct: 92 YKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQALMEKPQPFFGLVMAPTRE 151
Query: 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI 199
LAYQ++ ++LG+ +++R +VGGMD++ Q+ +L +PH+++ATPGR+ LE
Sbjct: 152 LAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGF 211
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-A 258
KFLV+DEADR+LD+ F L + + LP+ R+T LFSAT++S +++L S +
Sbjct: 212 S--LRNLKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFLFSATLSSKVESLQRASLS 269
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
N A + + TVETL+Q YI P KD+YL+++L E +G +S IIF+ T
Sbjct: 270 NPARVSISSSKYATVETLQQTYILRPYKHKDIYLVYLLH--EFIG-QSVIIFMRTVHETQ 326
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
++ LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD VLN
Sbjct: 327 RVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVATDVAARGLDIPSVDCVLN 386
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
+D+P + Y+HRVGRTARAG+ G A+SFVTQ DV++ IEA +GK+L EF + E +
Sbjct: 387 FDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAAMGKELAEFPAPKDEAM 446
Query: 439 SDITRVYKARR--VATMKLMDD 458
+V ++R + MK D+
Sbjct: 447 VFAEQVSASQRDAIQAMKHYDE 468
>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
Length = 513
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 184/416 (44%), Positives = 271/416 (65%), Gaps = 12/416 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ + + C+ LG + PT +Q IP LEGKD++GLA+TGSGKTAAFA+PIL
Sbjct: 83 SFKELGVMDSLCEACENLGYKNPTSIQVESIPVALEGKDLIGLAETGSGKTAAFAIPILQ 142
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L ++P G+ A ++ PTRELA+Q++EQF+ALG G+ +R V+VGGMD++TQ+ +L +PH
Sbjct: 143 ALWDNPTGLFACILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGKKPH 202
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F L + + +P+ R+T
Sbjct: 203 ILVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDMDFGPILDKILKVIPQTRRTY 260
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMTS ++ L S + + TV TL Q+++FIP KD YL+++ M
Sbjct: 261 LFSATMTSKVEKLQRASLSSPVRISVGSKYSTVSTLIQKFLFIPFKHKDTYLVYL---MN 317
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ ++ IIF T + L++LL L AV L+ SQS RL AL++FKSG IL+A
Sbjct: 318 EFAGQTTIIFCRTVQETSRLAILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNILVA 377
Query: 361 TDVASRGLDI---PTVDL--VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
TDVA+RGLD+ P L VLN+D+ + + Y+HRVGRTARAGR G ++S VTQ +V+L
Sbjct: 378 TDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQYEVEL 437
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
IEA +GK++ EF+ +E++VL RV +A+R A +L ++ EK R++ +
Sbjct: 438 FLRIEAALGKKIPEFDVQEEDVLIFSERVGEAQREAAKQLREE--REKKGGRREAR 491
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 193/447 (43%), Positives = 275/447 (61%), Gaps = 10/447 (2%)
Query: 13 LFAKPKSKTRSKPEPQPEPEP---ESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAE 69
L AK K+K E Q + E E +K + K +P D +F L L
Sbjct: 23 LAAKIKAKALENQEKQTQKEASGEEKDESKKHKKAKVQEEEPEYQGEDLQ-SFNDLNLVP 81
Query: 70 WAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGV 129
++ CK L +PTP+Q IP LEG+D++GLAQTGSGKTAAFA+PIL+RL ED
Sbjct: 82 ELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNRLWEDKQPY 141
Query: 130 LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI 189
A V+ PTRELA Q E F +LG+ + +R +VGGM+++ QA+ LM +PH++IATPGR+
Sbjct: 142 YACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKPHIIIATPGRL 201
Query: 190 KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFSATMTS 248
LE + +FLV+DEADR+LD+ F L + + +P ++R T LFSATMTS
Sbjct: 202 MDHLENTKGFS--LRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTTYLFSATMTS 259
Query: 249 DLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+ L S + ++TV+TL Q + +P +K+ YL+++L+ E++G ++ I
Sbjct: 260 KIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTYLIYLLN--ENIG-KTVI 316
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IF T + LS L L+ A ALH +Q+QR AL FK+G+ +IL+ATDVA+RGL
Sbjct: 317 IFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVATDVAARGL 376
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI IE V+GK+L
Sbjct: 377 DIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLP 436
Query: 429 EFECKEQEVLSDITRVYKARRVATMKL 455
+ C ++ V+S V KA M+L
Sbjct: 437 KENCDKEVVISLRDSVDKANGEVIMEL 463
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus
heterostrophus C5]
Length = 518
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 182/399 (45%), Positives = 257/399 (64%), Gaps = 7/399 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E C+ L PTP+Q IP L+G+DV+GLA+TGSGKTAAF LPIL
Sbjct: 90 TFADLGVREELCDACENLKFTNPTPIQAQAIPLALQGRDVIGLAETGSGKTAAFVLPILQ 149
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E + L++ PTRELAYQ+A+Q ALGS ++++C +VGGMD++ QA +L +PH
Sbjct: 150 ALLEKQQSLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH 209
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQT 239
+++ATPGR+ LE K++VLDEADR+LD+ F L + + LP+ R T
Sbjct: 210 IIVATPGRLLDHLENTKGFS--LKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHT 267
Query: 240 LLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
LFSATM+S +++L + N + + V TL Q+YIF+P KD+YL+H+L+
Sbjct: 268 YLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDLYLIHLLN- 326
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+++G IIF T +++LL L A+ LH SQS RL AL++FK+ IL
Sbjct: 327 -DNIG-HPTIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDIL 384
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP VDLV+N+D+P + YVHRVGRTARAG+ G AVSFVTQ D+++
Sbjct: 385 VATDVAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLR 444
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE +GKQ+ E + E + + RV +A+R+A ++ D
Sbjct: 445 IENALGKQIPEEVINKDEAMVYMERVNEAQRIAVREMKD 483
>gi|366994109|ref|XP_003676819.1| hypothetical protein NCAS_0E03920 [Naumovozyma castellii CBS 4309]
gi|342302686|emb|CCC70462.1| hypothetical protein NCAS_0E03920 [Naumovozyma castellii CBS 4309]
Length = 437
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 188/430 (43%), Positives = 267/430 (62%), Gaps = 15/430 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+ W + + + + +PT +Q CIP+IL+G+D +G A+TGSGKT AFA P+L
Sbjct: 8 TFKSLGLSRWLQEALQAMKINQPTAIQKACIPEILKGRDCIGGAKTGSGKTVAFAAPMLT 67
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA L +PH
Sbjct: 68 KWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVALVVGGESIVDQAIQLQKKPH 127
Query: 181 VVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--NR 237
+IATPGR+ ++ D R KFLVLDEAD +L F +L LP R
Sbjct: 128 FIIATPGRLAHHIMSSGEDTIGGLKRAKFLVLDEADSLLTDTFASDLATCIGALPSKDKR 187
Query: 238 QTLLFSATMTSDLQTLLELSANKA------YFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
QTLLF+AT+T ++ L + + Y E+ + TLK +YI +P++VK+ Y
Sbjct: 188 QTLLFTATITDQVRALEDAPIQEGKPPLFTYQVESVDKVAIPSTLKTEYILVPEHVKEAY 247
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +L+ E SAIIFV+ + +L L L+ +LHS Q +R ++LHRF+
Sbjct: 248 LYQLLT-CETYKDSSAIIFVNRTMTAEILRRTLYHLEVRVASLHSQMPQQERTNSLHRFR 306
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+ A +L+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ
Sbjct: 307 ANVARVLIATDVASRGLDIPTVELVINYDIPADPDTFIHRAGRTARAGRSGDAISFVTQR 366
Query: 412 DVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKK 469
DV I IE + K++ E + + V+ +T+V KA+R + M + + F E+ ++
Sbjct: 367 DVSRIEAIEKRINKKMTESDKVHDTAVIRKALTKVTKAKRESLMAMEKENFGER---KRV 423
Query: 470 QKLKMLAEKG 479
QK K LA KG
Sbjct: 424 QKRKELASKG 433
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 182/399 (45%), Positives = 257/399 (64%), Gaps = 7/399 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E C+ L PTP+Q IP LEG+DV+GLA+TGSGKTAAF LPIL
Sbjct: 90 TFADLGVREELCDACENLKFTNPTPIQAQAIPLALEGRDVIGLAETGSGKTAAFVLPILQ 149
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E + L++ PTRELAYQ+A+Q ALGS ++++C +VGGMD++ QA +L +PH
Sbjct: 150 ALLEKQQSLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH 209
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQT 239
+++ATPGR+ LE K++VLDEADR+LD+ F L + + LP+ R T
Sbjct: 210 IIVATPGRLLDHLENTKGFS--LKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHT 267
Query: 240 LLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
L+SATM+S +++L + N + + V TL Q+YIF+P KD+YL+H+L+
Sbjct: 268 YLYSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDLYLIHLLN- 326
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+++G IIF T +++LL L A+ LH SQS RL AL++FK+ IL
Sbjct: 327 -DNIG-HPTIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDIL 384
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP VDLV+N+D+P + YVHRVGRTARAG+ G AVSFVTQ D+++
Sbjct: 385 VATDVAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLR 444
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE +GKQ+ E + E + + RV +A+R+A ++ D
Sbjct: 445 IENALGKQIPEEVINKDEAMVYMERVNEAQRIAVREMKD 483
>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 478
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/458 (40%), Positives = 271/458 (59%), Gaps = 14/458 (3%)
Query: 20 KTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTV-------TFAGLGLAEWAV 72
K + K E Q PEPE +T ++ P D+ +F GL +
Sbjct: 27 KIKEKAEAQKIPEPE--KTETVGADETLEPKEEDKIDDTVEEPEQKYESFNDFGLVPEIL 84
Query: 73 QTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLAL 132
+ C++L +PTP+Q IP L+G+D++GLAQTGSGKTAAFA+P+L L E
Sbjct: 85 EACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQSLYEQATPFFCC 144
Query: 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVL 192
V+ PTRELAYQ+ E F +LGSG+ LR +VGGMD++ QAK LM +PHV++ATPGR+
Sbjct: 145 VLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMRKPHVIVATPGRLMDH 204
Query: 193 LEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQT 252
LE K+L++DEADR+LD+ F + V + +P+ R T LFSATMT+ ++
Sbjct: 205 LENTKGFS--LKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERSTYLFSATMTNKIEK 262
Query: 253 LLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVS 312
L S + TV++L Q + +P K+ +L+++L+K ++ +S IIF
Sbjct: 263 LQRASLVDPIKVSVSSKYSTVDSLIQSLMVVPDGYKNTFLIYLLNKYQN---KSIIIFTR 319
Query: 313 TCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372
TC +LL +D A+ LH +QSQRL AL++FK+ + TIL+ATDVA+RGLDIP
Sbjct: 320 TCAHAQRTALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILVATDVAARGLDIPM 379
Query: 373 VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFEC 432
VD+V+N+DIP + Y+HRVGRTARAGR G ++S VTQ D++LI +E+V+G +L +
Sbjct: 380 VDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELILRVESVLGMKLPKDVP 439
Query: 433 KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
E+LS V K A ++ + K KK+
Sbjct: 440 PRDEILSLHNTVEKFHNEAVRQIKEHQNRPSGKRSKKR 477
>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 428
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 179/408 (43%), Positives = 262/408 (64%), Gaps = 10/408 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL W V++ + + + RPT +Q CIP+IL+G+D +G A+TGSGKT AF P+L +
Sbjct: 4 FASLGLPRWLVESLQAMKITRPTNIQAACIPEILKGRDCIGGAKTGSGKTIAFGAPMLAK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
++DP G+ LV+TPTRELA Q+A+QF ALG+ ++L+ +++GG + Q + PH
Sbjct: 64 WSQDPSGIFGLVLTPTRELAMQIADQFAALGATVNLKVRLIIGGESMTDQVAMIKENPHF 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN--RQT 239
+IATPGR+ ++ E+ D R K+LVLDEADR+L F + L+ F+ LP + RQT
Sbjct: 124 IIATPGRLAHIIMENEDECRGLKRVKYLVLDEADRLLTDSFTDHLQTCFEALPNSNKRQT 183
Query: 240 LLFSATMTSDLQTLLE---LSANKAYFYEAYEGFKTVE---TLKQQYIFIPKNVKDVYLM 293
LLF+AT+T ++ L + + F + TV+ TL+ Y+ P VK+ L
Sbjct: 184 LLFTATVTDSVRALKDRPVAPGKQPVFLHELDNVDTVKIPSTLRLLYVLAPVVVKESMLH 243
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
++L+ ED +AI+FV+ + +L LL L+ +LHS QS+R ++LHRF++G
Sbjct: 244 NILTN-EDYKESTAIVFVNRSETAEILRRLLRHLEVTTTSLHSEMPQSERTNSLHRFRAG 302
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
A +L+ATD+ASRGLDIP+V+LV+N+DIPR P DYVHRVGRTARAGR G A+S VT ND+
Sbjct: 303 AARVLVATDLASRGLDIPSVELVINFDIPRDPDDYVHRVGRTARAGRKGDAISMVTPNDL 362
Query: 414 DLIHEIEAVVGKQLEEFECKEQEVL-SDITRVYKARRVATMKLMDDGF 460
I IE VG ++EE + +V+ + V KA+ A M + +GF
Sbjct: 363 SRILAIEDRVGVKMEELPLSDNKVIKQSLKAVSKAKIEARMDMEREGF 410
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/441 (42%), Positives = 275/441 (62%), Gaps = 18/441 (4%)
Query: 31 PEPESKNAKTTQLE-KFTNPDPN---------STTTDSTVTFAGLGLAEWAVQTCKELGM 80
P+P ++N E + T DPN + T + TF LGL + + C ++G
Sbjct: 32 PQPTAENPDIGDSEPQATADDPNVKDATSETEPSATTAPKTFKELGLIDSLCEACDKMGY 91
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
+ PTP+Q+ IP L+G+D++GLA+TGSGKTA+F LPIL L E P LV+ PTREL
Sbjct: 92 KAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQALMEKPQSFFGLVLAPTREL 151
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP 200
AYQ++ ++LG+ +++R +VGGMD++ Q+ +L +PH+++ATPGR+ LE
Sbjct: 152 AYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFS 211
Query: 201 PVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-AN 259
KFLV+DEADR+LD+ F L + + LP+ R+T LFSAT++S +++L S +N
Sbjct: 212 --LRSLKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFLFSATLSSKVESLQRASLSN 269
Query: 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319
A + + TVETL+Q Y+ P KD+YL+++L E +G +S IIF+ T
Sbjct: 270 PARVSISSSKYATVETLQQTYLLRPYKHKDIYLVYLLH--EFIG-QSVIIFMRTVHETQR 326
Query: 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
++ LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD VLN+
Sbjct: 327 VAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVATDVAARGLDIPSVDCVLNF 386
Query: 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLS 439
D+P + Y+HRVGRTARAG+ G A+SFVTQ DV++ IEA +GK+L E+ + E +
Sbjct: 387 DLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAAMGKELAEYPAPKDEAMV 446
Query: 440 DITRVYKARR--VATMKLMDD 458
+V ++R + MK D+
Sbjct: 447 FAEQVSASQRDAIQAMKHYDE 467
>gi|254568340|ref|XP_002491280.1| Putative ATP-dependent RNA helicase of the DEAD-box family
[Komagataella pastoris GS115]
gi|238031077|emb|CAY69000.1| Putative ATP-dependent RNA helicase of the DEAD-box family
[Komagataella pastoris GS115]
gi|328352202|emb|CCA38601.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 434
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/432 (43%), Positives = 271/432 (62%), Gaps = 15/432 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V F LG+++W ++ + + P+ +Q IPKIL G D +G A+TGSGKT AFA P+L
Sbjct: 2 VKFEELGVSKWLCESLDAMKIYTPSKIQEATIPKILAGYDCIGGAKTGSGKTIAFAAPML 61
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDPYGV L++TPTRELA Q+AEQ+ ALG+ ++++ V++GG D++ QA L RP
Sbjct: 62 TKWSEDPYGVFGLILTPTRELALQIAEQYAALGASMNIKVSVILGGGDIVQQALELQRRP 121
Query: 180 HVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKN 236
H V+ATPGR+ +L + + KFLVLDEADR+L F +L F+ L P+
Sbjct: 122 HFVVATPGRLADHILSSGEETIGGLRKIKFLVLDEADRLLSNSFGSDLERCFKVLPPPEK 181
Query: 237 RQTLLFSATMTSDLQTLLELSANKA---YFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T +++ L E + F E V TL Y+FIP VK+
Sbjct: 182 RQTLLFTATVTDEVRALKEKPVPEGKLPVFVHEVESVDKVAIPATLTTNYLFIPSYVKEA 241
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL VL+ +E+ + I+FV+ ++ LL L L+ +LHS Q +R+++LHRF
Sbjct: 242 YLNAVLA-LEENADSTVIVFVNRTQTAELLRRTLRNLEFRVASLHSEMPQIERINSLHRF 300
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIP+V+LV+NYD+P P DY+HRVGRTARAGR G ++SFVT+
Sbjct: 301 KAGAARILIATDVASRGLDIPSVELVVNYDMPADPDDYIHRVGRTARAGRKGESLSFVTE 360
Query: 411 NDVDLIHEIEAVVGKQLEEFE--CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
DV + IE + K+++++E + + + + + A+R A M + +GF EK RK
Sbjct: 361 QDVKRVLAIEERINKKMDKYELVTDNKVIETSLHKTGAAKREALMAMEREGFGEK---RK 417
Query: 469 KQKLKMLAEKGS 480
K+K K S
Sbjct: 418 NNKIKNAKRKNS 429
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/442 (44%), Positives = 269/442 (60%), Gaps = 16/442 (3%)
Query: 28 QPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQ 87
QPE EPE K Q E+ + D +T F LGL + ++L PTP+Q
Sbjct: 44 QPE-EPEDK-----QNEQQSEQD---ESTKQVTLFKELGLQPDILDAIEKLNFSTPTPIQ 94
Query: 88 THCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQ 147
+P L+G+D++G+AQTGSGKTAAFA+PIL L E A V+ PTRELAYQ+ E
Sbjct: 95 AQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQALWEAQTPYFACVLAPTRELAYQIRET 154
Query: 148 FKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTK 207
F ALG + LRC +VGGMD++ QAK LM +PHV++ATPGR+ LE K
Sbjct: 155 FDALGVNMGLRCSTIVGGMDMMEQAKELMRKPHVIVATPGRLMDHLENTKGFS--LKALK 212
Query: 208 FLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267
+LV+DEADR+LD+ F L + +P+ R+T LFSAT+TS ++ L S
Sbjct: 213 YLVMDEADRLLDMEFGPVLDRILNIIPRERKTYLFSATLTSKVEKLQRASLIDPVKIAVN 272
Query: 268 EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL 327
+ + TV+TL Q + +P K+ YL+++L+ E +G +S I+F TC ++LL L
Sbjct: 273 DKYSTVDTLIQTLMVVPDGYKNTYLIYLLN--EYVG-KSVIVFARTCAHAQKVALLARIL 329
Query: 328 DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387
A+ LH +Q+QRL AL++FKSG IL+ATDVA+RGLDIP+VDLV+NYDIP +
Sbjct: 330 GFSAIPLHGQLTQAQRLGALNKFKSGDKQILVATDVAARGLDIPSVDLVVNYDIPTDSKA 389
Query: 388 YVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKA 447
Y+HRVGRTARAGR G +VS VTQ D++LI IE V+ +L + + E+L+ V +A
Sbjct: 390 YIHRVGRTARAGRSGKSVSLVTQYDLELILRIEKVIDMKLPKEVPNKNEILALHDSVDRA 449
Query: 448 RRVATMKLMDDGFEEKAKERKK 469
A K+ + F K K RKK
Sbjct: 450 TAQAVSKVKE--FHSKRKFRKK 469
>gi|448100218|ref|XP_004199301.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
gi|359380723|emb|CCE82964.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
Length = 437
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/438 (44%), Positives = 277/438 (63%), Gaps = 13/438 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LG+ +W + + + PT +Q CIPK+L+G D +G A+TGSGKT AFA PIL
Sbjct: 1 MSFSDLGVGKWLCEALNSMKIYTPTAIQKACIPKVLKGHDCIGGAKTGSGKTIAFASPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDPYG+ LV+TPTRELA Q+AEQF ALG+ ++++ V+VGG D++ QA L RP
Sbjct: 61 TKWSEDPYGICGLVLTPTRELALQIAEQFAALGATMNIKVCVIVGGDDIVKQALELQRRP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--N 236
H+VIATPGR+ +L D R K+LVLDEADR+L F +L F LPK N
Sbjct: 121 HIVIATPGRLADHILNSGEDTICGLRRVKYLVLDEADRLLSNSFGSDLERCFGVLPKPEN 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE------TLKQQYIFIPKNVKDV 290
RQTLLF+AT+T +++L E + TVE TL +Y+F+P VK+
Sbjct: 181 RQTLLFTATITDAVRSLKEKPVPEGKLPVFVNEVDTVENIAIPSTLSIKYLFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL ++L+ + + + IIFV+ + LL +L LD +LHS QS+R+++LHRF
Sbjct: 241 YLHNLLT-LPEYEKTTTIIFVNRTHTAELLRRMLRRLDFRVASLHSEMPQSERVNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+ A IL+ATDVASRGLDIP V+LV+NYDIP P D++HRVGRTARAGR G ++S V +
Sbjct: 300 KANAARILIATDVASRGLDIPDVNLVVNYDIPADPDDFIHRVGRTARAGRKGDSISIVAE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE-CKEQEVLS-DITRVYKARRVATMKLMDDGFEEKAKERK 468
DV+ I IE + K++E+ E + +V+ + A+R A M + D F EK K
Sbjct: 360 KDVNRILAIEERINKKMEKMEDVTDNKVIKISLKETSVAKREAMMDMDKDSFGEK-KRTN 418
Query: 469 KQKLKMLAEKGSLKKRSE 486
K K + ++K + K+++E
Sbjct: 419 KMKRQDTSKKPNKKRKTE 436
>gi|50289845|ref|XP_447354.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690916|sp|Q6FQZ0.1|DBP8_CANGA RecName: Full=ATP-dependent RNA helicase DBP8
gi|49526664|emb|CAG60291.1| unnamed protein product [Candida glabrata]
Length = 437
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/424 (43%), Positives = 267/424 (62%), Gaps = 14/424 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
F LGL++W V++ + +R PT +Q+ CIP+IL+G+D +G A+TGSGKT AFA P+L
Sbjct: 10 NFRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLT 69
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA L +PH
Sbjct: 70 QWSEDPTGMFGIVLTPTRELAMQIAEQFTALGSYMNIRVALVVGGESIVDQALQLQRKPH 129
Query: 181 VVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNR 237
+IATPGR+ +L D R K+LVLDEAD +L F +L+ LP + R
Sbjct: 130 FIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEADILLTETFSNDLKTCVGALPPKEKR 189
Query: 238 QTLLFSATMTSDLQTLLELSANKA------YFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
QTLLF+AT+T ++ L + K Y E + TL +Y+ +P++VK+ Y
Sbjct: 190 QTLLFTATITDQVRALQDAPVQKGKQPLFCYEVENVDNVAIPSTLNTEYVLVPEHVKEAY 249
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +L+ E +AIIFV+ + +L L+ LD +LHS Q +R +++HRF+
Sbjct: 250 LYQLLT-CESYANSTAIIFVNRTTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHRFR 308
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+ A +L+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SF+TQ
Sbjct: 309 ANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQR 368
Query: 412 DVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAK--ER 467
DV I IEA + ++ E + + V+ +T+V KA+R A M + + F E+ K +R
Sbjct: 369 DVSRIEAIEARINMKMTECDKVHDTAVIRKALTKVSKAKREALMAMEKENFGERRKLQKR 428
Query: 468 KKQK 471
K QK
Sbjct: 429 KTQK 432
>gi|195581763|ref|XP_002080703.1| GD10627 [Drosophila simulans]
gi|194192712|gb|EDX06288.1| GD10627 [Drosophila simulans]
Length = 527
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/417 (42%), Positives = 265/417 (63%), Gaps = 7/417 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL R
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLSGDFDESLAIIERCLPKTRQNLF 186
Query: 242 FSATMTSDLQ--TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
FSATM ++ ++ +++N + + TVETL Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMRDFMKESSIFPIASN-CFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY 245
Query: 300 -EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E+ + +IF +T + C LLS+ L+ +D + V LH F Q +R++AL RFKS Q L
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIH 417
+ATDVA+RGLDIP+V+LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 366 AIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 286/474 (60%), Gaps = 11/474 (2%)
Query: 12 PLFAKPKSKTRSKPEPQPEPEPESKNA--KTTQLEKFTNPDPNSTTTDSTVTFAGLGLAE 69
P K K KP+ P PEP ++A + + E+ T D N + TF LG+ +
Sbjct: 13 PSAVKKKKTEAPKPKITPGPEPRIEDAVSEASDAEESTTLD-NENGEAAPKTFKDLGIVD 71
Query: 70 WAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGV 129
+ C LG ++PT +Q IP L+ +D++G+A+TGSGKTAAFALPIL L + P +
Sbjct: 72 SLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPILQALLDKPQPL 131
Query: 130 LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI 189
ALV+ PTRELA Q+A+ F+ALGS ++LRC +++GG+D++ QA +L +PHVV+ATPGR+
Sbjct: 132 FALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGKKPHVVVATPGRL 191
Query: 190 KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSD 249
LE+ ++ V+DEADR+LD+ F L + + LP+ R+T LFSATM+S
Sbjct: 192 LDHLEKTKGFS--LRNLRYCVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSK 249
Query: 250 LQTLLELSANKAYFYE-AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+++L S + ++TV TL Y+FIP KD Y +++ ++ ++ I
Sbjct: 250 VESLQRASLRDPLKVNVSTSKYQTVSTLVSNYLFIPHIHKDTYFIYLCNEFAG---KTMI 306
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
+F T +++LL L A+ LH SQS RL AL +F++G IL+ATDVA+RGL
Sbjct: 307 VFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFRAGTRNILVATDVAARGL 366
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP VD V+NYD+P+ + Y+HRVGRTARAG+ G A+S VTQ D+++ IEA +G +L
Sbjct: 367 DIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQYDLEIWTRIEAALGTKLT 426
Query: 429 EFECKEQEVLSDITRVYKARRVA--TMKLMDDGFEEKAKERKKQKLKMLAEKGS 480
E+ ++ EV+ RV +A+R A MK + D +K K + K GS
Sbjct: 427 EYAYEKDEVMVFKPRVEEAQRHARNEMKNLIDDRGKKGSVLKGHRGKKRGAPGS 480
>gi|393245773|gb|EJD53283.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 463
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 188/427 (44%), Positives = 265/427 (62%), Gaps = 13/427 (3%)
Query: 33 PESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIP 92
P + A T+ T D S ++ +F LGL E ++ +L RPT +Q +P
Sbjct: 2 PAATEASTSA----TTLDNGSNEEETRPSFKELGLIEPLLEALDKLSFARPTEIQAAALP 57
Query: 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152
L G D++G+A+TGSGKTAAFALPIL +L EDP + A I PTRELA+Q+A+ F+ALG
Sbjct: 58 HALAGHDIIGVAETGSGKTAAFALPILQKLWEDPRPLFACCIAPTRELAFQIAQSFEALG 117
Query: 153 SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT-KFLV 210
L +R V++GG+ + Q +L RPH+++A PGR+ LE FS RT K+LV
Sbjct: 118 GSLGVRVAVIIGGVKEIEQQIALSKRPHIIVAAPGRLNWHLENTKG----FSLRTLKYLV 173
Query: 211 LDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGF 270
LDEADR+LD+ F +++ + + LPK R T LFSATMT ++ L S + +
Sbjct: 174 LDEADRLLDLDFGKDIDKLLKVLPKERHTYLFSATMTDKVEKLQRASLSNPKRVAVSSKY 233
Query: 271 KTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE 330
TV TL Q Y+ +P K+V L+++ + + + +S IIF T +S++L L
Sbjct: 234 STVSTLLQYYLLVPLPQKEVNLIYLCNSLAE---KSIIIFTRTQHDAQRVSIILRTLGFS 290
Query: 331 AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVH 390
AV LH SQS RL AL +FK+G IL+ATDVASRGLDIP VD+V+NYD+P +DY+H
Sbjct: 291 AVPLHGALSQSARLGALAKFKAGGRKILVATDVASRGLDIPHVDIVINYDVPTNSKDYIH 350
Query: 391 RVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRV 450
RVGRTARAGR G +V+FVTQ DV++ EAV+GK+++ + ++ EV RV +A R+
Sbjct: 351 RVGRTARAGRAGKSVTFVTQYDVEVFKRTEAVIGKEMDAWPVEKAEVEVLRQRVEEAARL 410
Query: 451 ATMKLMD 457
A +L D
Sbjct: 411 AAKELRD 417
>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
Length = 474
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 188/429 (43%), Positives = 275/429 (64%), Gaps = 7/429 (1%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTH 89
E + S +A +++ E+ + D + TF LGL + C+ LG + PT +Q
Sbjct: 16 EKDEVSDDASSSE-EEVQDRDEKDEADSAPKTFKDLGLIPQLCEACETLGYKAPTAIQAE 74
Query: 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149
IP L+ +D++GLA+TGSGKTAAFALPIL L + P LV+ PTRELAYQ++E F+
Sbjct: 75 SIPLALQNRDLIGLAETGSGKTAAFALPILQALMDKPQPFFGLVLAPTRELAYQISEAFE 134
Query: 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209
ALGS + +R V+VGGMD++ QA ++ RPH+++ATPGR+ LE K+L
Sbjct: 135 ALGSTISVRSVVLVGGMDMVPQAIAIGKRPHIIVATPGRLLDHLENTKGFS--LRSLKYL 192
Query: 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYE 268
V+DEADR+LD+ F + + + LP+ R+T LFSATM+S +++L S +N +
Sbjct: 193 VMDEADRLLDMDFGPIIDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVSVSSN 252
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD 328
++TV TL Q Y+FIP KDV+L+ +L+ E +G ++ IIF T + L+LL L
Sbjct: 253 KYQTVSTLLQYYMFIPHKHKDVHLIWLLN--EHIG-QTTIIFTRTIHETNRLALLTRFLG 309
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
A+ALH SQS RL+++ +F+S +IL+ATDVA+RGLDIP+VDLVLNYD+ + +
Sbjct: 310 FSAIALHGQLSQSSRLASISKFRSKTRSILIATDVAARGLDIPSVDLVLNYDLAADSKTH 369
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
VHR+GRTARAG+ G A+S VTQ DV++ IE + K+L E++ ++ EVL RV +A+
Sbjct: 370 VHRIGRTARAGKSGKAISLVTQYDVEVWLRIEKALDKKLPEYKVEKDEVLILSDRVSEAQ 429
Query: 449 RVATMKLMD 457
R A +L D
Sbjct: 430 RQAITELKD 438
>gi|395850554|ref|XP_003797848.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Otolemur
garnettii]
Length = 441
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 179/408 (43%), Positives = 263/408 (64%), Gaps = 16/408 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+
Sbjct: 21 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 80
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L +PH
Sbjct: 81 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 140
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VVIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++R+T
Sbjct: 141 VVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 198
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L+++
Sbjct: 199 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELA 258
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +ILLA
Sbjct: 259 G---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 315
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VD+V+N+DIP + + ++FVTQ DV+L IE
Sbjct: 316 TDVASRGLDIPHVDVVVNFDIPTHSKXXXXXX----------XXITFVTQYDVELFQRIE 365
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 366 HLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRTRE 412
>gi|440299556|gb|ELP92108.1| ATP-dependent rRNA helicase rrp3, putative [Entamoeba invadens IP1]
Length = 433
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/427 (41%), Positives = 269/427 (62%), Gaps = 8/427 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+P +T S TF +GL ++ + LG + PTP+Q+ IP L+ KD++G+AQTGSG
Sbjct: 3 NPIESTPPSNPTFQEIGLLPEVIKVVEHLGYKMPTPIQSSSIPVALKRKDIIGIAQTGSG 62
Query: 110 KTAAFALPILHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGL-HLRCEVVVGG 165
KTAAF LP+L+ L E +V+ PTRELA Q+ E + L L ++VGG
Sbjct: 63 KTAAFLLPMLNHLLNTNERKRDFFCIVVEPTRELAAQVIEVLDRMAEALPGLVSCLLVGG 122
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225
MD + QA L +P+V++ TPGR+ + + +T+FLV+DEAD++LD+ F +
Sbjct: 123 MDEMKQAVLLAKKPNVIVCTPGRLVYHINNTKGVSQSLQKTRFLVIDEADKLLDMDFAAD 182
Query: 226 LRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIP 284
+ + + +PK R T+LFSATM+S ++ L S + ++ + + TV+TL+Q+Y+FIP
Sbjct: 183 IDKLIESVPKQRTTMLFSATMSSRVEKLQRASLVHPVKIKQSEQKYSTVDTLRQEYLFIP 242
Query: 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRL 344
+D YLM +L K+ G +SAIIF C L L+L +L EA+ L+ SQ +RL
Sbjct: 243 FKYRDGYLMAILQKV---GAQSAIIFTMKCSGNTRLVLMLRQLGYEAIPLNGKMSQQKRL 299
Query: 345 SALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA 404
AL +FKSG+ ++L+ATDVASRGLDIP VD V+NYD P P+DY+HRVGRTARAG+ G+A
Sbjct: 300 LALEKFKSGKRSLLVATDVASRGLDIPDVDFVINYDCPVEPKDYIHRVGRTARAGKSGMA 359
Query: 405 VSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
++ VTQ ++ IE ++ K+L+E++ +EQ +S + R +A RV L D+ +EK
Sbjct: 360 ITIVTQYSLEFYQRIETMIEKKLDEYKVEEQVAMSYVNRCSEAMRVVNQILKDEASKEKE 419
Query: 465 KERKKQK 471
+ + K K
Sbjct: 420 RIKDKNK 426
>gi|444318027|ref|XP_004179671.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
gi|387512712|emb|CCH60152.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
Length = 506
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 178/380 (46%), Positives = 252/380 (66%), Gaps = 6/380 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ L L V+ CK L +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL+
Sbjct: 87 SFSELKLVPELVEACKNLNYEKPTPIQSRAIPPALEGKDIIGLAQTGSGKTAAFAIPILN 146
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L ED A ++ PTRELA Q+ EQF +LG+ + +R +VGGM+++ QA+ LM +PH
Sbjct: 147 KLWEDQQPYYACIMAPTRELAQQIKEQFDSLGALMGVRSVCIVGGMNMMDQARDLMRKPH 206
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE + KFLV+DEADR+LD+ F L + + LP + R T
Sbjct: 207 IIIATPGRLMDHLENTRGFS--LRKLKFLVMDEADRLLDLEFGPVLDRILKILPTQGRTT 264
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q + +P +K+ YL+++++
Sbjct: 265 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLIQTLMVVPGGLKNTYLIYLIN-- 322
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G +S IIF T + LSLL L+ +A+ALH +Q+QR AL FK+G+ +IL+
Sbjct: 323 EFVG-KSIIIFTRTKANAERLSLLSNTLEFDAIALHGDLNQNQRTGALDLFKAGKKSILI 381
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI I
Sbjct: 382 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 441
Query: 420 EAVVGKQLEEFECKEQEVLS 439
E V+GK+L + +LS
Sbjct: 442 EDVLGKKLPKENVDRDIILS 461
>gi|389642833|ref|XP_003719049.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
gi|351641602|gb|EHA49465.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
Length = 562
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 260/398 (65%), Gaps = 12/398 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ E + C+ L ++PTP+Q IP L+G+DV+G+A+TGSGKTAAFALPI
Sbjct: 133 TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPI 192
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P + LV+ PTRELA Q+ + F+ALG+ + LRC VVVGG+D+++Q+ +L +
Sbjct: 193 LQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKK 252
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ LE+ KFLV+DEADR+LD+ F L + + LP+ R+
Sbjct: 253 PHIVVATPGRLLDHLEKTKGFS--LRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERR 310
Query: 239 TLLFSATMTSDLQTLLELSAN---KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
T LFSATM+S +++L S K + E KTV TL Q +FIP KDVYL+++
Sbjct: 311 TFLFSATMSSKVESLQRASLRDPLKVSVSSSQE--KTVSTLIQNPLFIPHKHKDVYLIYL 368
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + ++ I+F T +S+LL L A+ LH SQS RL AL++FK+
Sbjct: 369 AN---EFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSR 425
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP VDLV+N+D+P+ Y+HRVGRTARAGR G A+S +TQ D++L
Sbjct: 426 DILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLEL 485
Query: 416 IHEIE--AVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IE A+ G++L F+ ++EV+ RV +A+R A
Sbjct: 486 WLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQRHA 523
>gi|195332686|ref|XP_002033028.1| GM21090 [Drosophila sechellia]
gi|194124998|gb|EDW47041.1| GM21090 [Drosophila sechellia]
Length = 522
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 180/417 (43%), Positives = 265/417 (63%), Gaps = 7/417 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL R
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLF 186
Query: 242 FSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
FSATM + ++ + A+ + + TVETL Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFMKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYR 246
Query: 301 DMGIRSA--IIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ G +A +IF +T + C LLS+ L+ +D + V LH F Q +R++AL RFKS Q L
Sbjct: 247 E-GNENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIH 417
+ATDVA+RGLDIP+V+LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 366 AIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 260/398 (65%), Gaps = 12/398 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ E + C+ L ++PTP+Q IP L+G+DV+G+A+TGSGKTAAFALPI
Sbjct: 109 TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPI 168
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P + LV+ PTRELA Q+ + F+ALG+ + LRC VVVGG+D+++Q+ +L +
Sbjct: 169 LQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKK 228
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ LE+ KFLV+DEADR+LD+ F L + + LP+ R+
Sbjct: 229 PHIVVATPGRLLDHLEKTKGFS--LRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERR 286
Query: 239 TLLFSATMTSDLQTLLELSAN---KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
T LFSATM+S +++L S K + E KTV TL Q +FIP KDVYL+++
Sbjct: 287 TFLFSATMSSKVESLQRASLRDPLKVSVSSSQE--KTVSTLIQNPLFIPHKHKDVYLIYL 344
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + ++ I+F T +S+LL L A+ LH SQS RL AL++FK+
Sbjct: 345 AN---EFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSR 401
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP VDLV+N+D+P+ Y+HRVGRTARAGR G A+S +TQ D++L
Sbjct: 402 DILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLEL 461
Query: 416 IHEIE--AVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IE A+ G++L F+ ++EV+ RV +A+R A
Sbjct: 462 WLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQRHA 499
>gi|444316946|ref|XP_004179130.1| hypothetical protein TBLA_0B07950 [Tetrapisispora blattae CBS 6284]
gi|387512170|emb|CCH59611.1| hypothetical protein TBLA_0B07950 [Tetrapisispora blattae CBS 6284]
Length = 393
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/385 (45%), Positives = 253/385 (65%), Gaps = 10/385 (2%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
++S F LGL+ W V++ K + + PT +Q HCIP+IL+G+D +G A+TGSGKT AFA
Sbjct: 2 SNSITNFENLGLSRWLVESLKSMKITTPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFA 61
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
P+L + +EDP G+ A+++TPTRELA Q+AEQF ALGS +++R +VVGG +++ QA L
Sbjct: 62 GPMLTKWSEDPCGMFAVILTPTRELAMQIAEQFTALGSSMNIRVCLVVGGENIVKQALEL 121
Query: 176 MNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
N+PH +IATPGR+ +L D F R K+LVLDEAD +L F ++L V LP
Sbjct: 122 QNKPHFIIATPGRLAHHILRSGEDTVGGFIRCKYLVLDEADILLTSTFSKDLSVCIGKLP 181
Query: 235 --KNRQTLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKN 286
+ RQTLLF+AT+T ++ L + + +Y E+ + TLK +Y+ +P +
Sbjct: 182 PKEKRQTLLFTATITDQVKVLQDAPKHDGRLPLFSYQVESIDKVAIPSTLKTEYVLVPGH 241
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
VK+ YL H+L+ E SAI+FV+ + +L L +L+ +LHS Q +R ++
Sbjct: 242 VKEAYLYHLLT-CEAYNESSAIVFVNRTVTAEILRRTLYDLEVRVTSLHSQMPQQERTNS 300
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
LHRF++ A +L+ATDVASRGLDIPTV+LV+NYD+P P ++HR GRTARAGR G A+S
Sbjct: 301 LHRFRANAARVLIATDVASRGLDIPTVELVINYDLPADPDTFIHRSGRTARAGRTGDAIS 360
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFE 431
FVT ND+ I IE + K++ E +
Sbjct: 361 FVTPNDISRIQSIEERINKKMSECD 385
>gi|198458635|ref|XP_001361114.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
gi|198136412|gb|EAL25690.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
Length = 527
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/420 (42%), Positives = 262/420 (62%), Gaps = 7/420 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T F LGL W V+ +LG++ TP+Q +CIP IL GKD +G AQTGSGKT AFALPI
Sbjct: 6 TNPFQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPI 65
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L RL+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM R
Sbjct: 66 LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQR 125
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLP RQ
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQ 183
Query: 239 TLLFSATMTSDLQ--TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
L FSATM ++ ++ +S + + TV+TL Q+Y+ +D+ L+ L
Sbjct: 184 NLFFSATMKDFMKESSIFPISKD-CIEWSQDSNVATVDTLDQRYLLCADYDRDMVLIESL 242
Query: 297 SKMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
K + S + IF +T + C LLS+ L+ +D + V LH F Q +R++AL RFKS
Sbjct: 243 RKYREENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHI 302
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVD 414
L+ATDVASRGLDIP+V LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++
Sbjct: 303 RTLIATDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLE 362
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
L+ IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 363 LLGAIETEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/412 (43%), Positives = 272/412 (66%), Gaps = 12/412 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + + C+ L + PTP+Q IP L+ +D++GLA+TGSGKTAAFALPIL
Sbjct: 58 TFKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQ 117
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + LV+ PTRELA+Q+ + F+ALGS + LRC V+VGG+D++ QA +L +PH
Sbjct: 118 ALLDKPQPLFGLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKKPH 177
Query: 181 VVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
+++ATPGR+ LE+ FS RT K+LV+DEADR+LD+ F + + + +P+ R+
Sbjct: 178 IIVATPGRLVDHLEKTKG----FSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERR 233
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSAT++S +++L S + + ++TV TL Q + +P+ KD YL+++++
Sbjct: 234 TYLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKRKDTYLIYLVN 293
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +S I+F T +++LL L A+ LH SQS RL AL++F+SG I
Sbjct: 294 EFTG---KSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDI 350
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDI VD+VLNYD+P+ + Y+HRVGRTARAG+ G+A+S VTQ D+++
Sbjct: 351 LVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQ 410
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
IEA +GK+L+ + +++EVL+ RV +A+R A +++ EK R K
Sbjct: 411 RIEAALGKKLDIYPTEKEEVLAFQHRVEEAQREARIEM--KSLSEKKDRRGK 460
>gi|440486596|gb|ELQ66446.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae P131]
Length = 538
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 260/398 (65%), Gaps = 12/398 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ E + C+ L ++PTP+Q IP L+G+DV+G+A+TGSGKTAAFALPI
Sbjct: 109 TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPI 168
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P + LV+ PTRELA Q+ + F+ALG+ + LRC VVVGG+D+++Q+ +L +
Sbjct: 169 LQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKK 228
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ LE+ KFLV+DEADR+LD+ F L + + LP+ R+
Sbjct: 229 PHIVVATPGRLLDHLEKTKGFS--LRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERR 286
Query: 239 TLLFSATMTSDLQTLLELSAN---KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
T LFSATM+S +++L S K + E KTV TL Q +FIP KDVYL+++
Sbjct: 287 TFLFSATMSSKVESLQRASLRDPLKVSVSSSQE--KTVSTLIQNPLFIPHKHKDVYLIYL 344
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + ++ I+F T +S+LL L A+ LH SQS RL AL++FK+
Sbjct: 345 AN---EFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSR 401
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP VDLV+N+D+P+ Y+HRVGRTARAGR G A+S +TQ D++L
Sbjct: 402 DILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLEL 461
Query: 416 IHEIE--AVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IE A+ G++L F+ ++EV+ RV +A+R A
Sbjct: 462 WLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQRHA 499
>gi|195154715|ref|XP_002018267.1| GL17616 [Drosophila persimilis]
gi|194114063|gb|EDW36106.1| GL17616 [Drosophila persimilis]
Length = 527
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/417 (42%), Positives = 261/417 (62%), Gaps = 7/417 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W V+ +LG++ TP+Q +CIP IL GKD +G AQTGSGKT AFALPIL R
Sbjct: 9 FQSLGLRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPILER 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLP RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNLF 186
Query: 242 FSATMTSDLQ--TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
FSATM ++ ++ +S + + TV+TL Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFMKESSIFPISKD-CIEWSQDSNVATVDTLDQRYLLCADYDRDMVLIESLRKY 245
Query: 300 EDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ S + IF +T + C LLS+ L+ +D + V LH F Q +R++AL RFKS L
Sbjct: 246 REENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIRTL 305
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIH 417
+ATDVASRGLDIP+V LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 306 IATDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLG 365
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 366 AIETEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi]
gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi]
Length = 524
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/419 (43%), Positives = 262/419 (62%), Gaps = 5/419 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T F LGL W + +LG++ TP+Q +CIP IL GKD +G A+TGSGKT AFALPI
Sbjct: 6 TNAFLQLGLRPWLAKQLTKLGLKGATPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPI 65
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L RL+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM R
Sbjct: 66 LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQR 125
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK+RQ
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPKSRQ 183
Query: 239 TLLFSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
L FSATM + ++ + A + TV+TL Q+Y+ +D+ L+ L
Sbjct: 184 NLFFSATMKDFMKESSIFPIAKDCLEWSQDSDVATVDTLDQRYLLCADYDRDMVLVESLR 243
Query: 298 KMEDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K + S + IF +T + C LLS+ L ++ E V LH F Q +R++AL RFKS
Sbjct: 244 KYREENENSNVMIFTNTKKYCQLLSMTLANMEIENVCLHGFMRQKERVAALSRFKSNHIR 303
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDL 415
L+ATDVA+RGLDIP+V LV+N+ +PR P++Y+HRVGRTARAGR GLA+S F D++L
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
+ IEA + +L E ++ V +V +RR + M+L ++ F+E+A+ +++ M
Sbjct: 364 LGAIEAEINTKLTEHPIDQRMVERIFMQVNVSRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|194863293|ref|XP_001970368.1| GG23409 [Drosophila erecta]
gi|190662235|gb|EDV59427.1| GG23409 [Drosophila erecta]
Length = 526
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/419 (42%), Positives = 265/419 (63%), Gaps = 5/419 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPI
Sbjct: 6 TNPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPI 65
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L RL+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM R
Sbjct: 66 LERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQR 125
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK RQ
Sbjct: 126 PHIVVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPKKRQ 183
Query: 239 TLLFSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
L FSATM + ++ + A+ + + TV+TL Q+Y+ +D+ L+ L
Sbjct: 184 NLFFSATMKDFIKESSIFPIASDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALR 243
Query: 298 KM-EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K E+ + +IF +T + C LLS+ L+ +D + V LH F Q +R++AL RFKS Q
Sbjct: 244 KYREENESANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQVR 303
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDL 415
L+ATDVA+RGLDIP+V+LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L
Sbjct: 304 TLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
+ IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 364 LGAIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|425768778|gb|EKV07293.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium digitatum
Pd1]
gi|425770200|gb|EKV08673.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium digitatum
PHI26]
Length = 520
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 266/428 (62%), Gaps = 16/428 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA L +A W V + + ++RPT +Q CIP+IL+GKD +G ++TGSGKT AFA+PI+
Sbjct: 91 TFAELDVAPWLVSSLTAMAIKRPTAIQKACIPEILKGKDCIGGSRTGSGKTMAFAVPIMQ 150
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ A +P+G+ ALV+TPTRELA Q+ EQF+A+ + +++ +VVGG+D+ QA L NRPH
Sbjct: 151 QWARNPFGIYALVLTPTRELALQIYEQFRAVSAPQNMKPILVVGGVDMRQQAIELANRPH 210
Query: 181 VVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-----P 234
VVIATPGR+ ++ D R K +VLDEADR+L G L V CL
Sbjct: 211 VVIATPGRLADHIKTSGVDTVAGLRRVKMVVLDEADRLLASGPGSMLPDVETCLGALPPS 270
Query: 235 KNRQTLLFSATMTSDLQTLLELSA--NKAYFYEAYEGF----KTVETLKQQYIFIPKNVK 288
RQTLLF+ATMT++++ L + A NK + G K TLKQ Y+ +P +
Sbjct: 271 AERQTLLFTATMTAEVRALKSMPAAGNKPPIFTTEIGTENQGKIPPTLKQTYLKVPMTHR 330
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L H L E + I+F + ++C LL L L +LHS QS+R + L
Sbjct: 331 EAFL-HALLSTEVNVTKPVIVFCNHTKTCDLLERTLRRLGHRITSLHSILPQSERTANLA 389
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A +L+ATDVASRGLDIP+V+LV+N+D+PR P DYVHRVGRTARAGR G A + V
Sbjct: 390 RFRATAARVLVATDVASRGLDIPSVELVINFDVPRNPDDYVHRVGRTARAGRSGEATTLV 449
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE-- 466
Q DV+L+ IE VG+Q+EEFE + + S + R + V + K G ++ ++
Sbjct: 450 GQRDVELVLAIEERVGRQMEEFEQEGVNIESRVVRTGLLKEVGSAKREAAGEIDEGRDIL 509
Query: 467 -RKKQKLK 473
RK+ KLK
Sbjct: 510 GRKRNKLK 517
>gi|429327957|gb|AFZ79717.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 457
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 188/426 (44%), Positives = 252/426 (59%), Gaps = 9/426 (2%)
Query: 43 LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLG 102
LEK +P D +F LG+ C+ELG + PT +Q IP LEGKDV+G
Sbjct: 24 LEKKVEVEPKQEEQDGP-SFEDLGICSELCNACRELGWKSPTNIQIEAIPPALEGKDVIG 82
Query: 103 LAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
LA+TGSGKTAAF +PIL L + P + ALV+ PTREL Q+ EQFKALGS + L ++
Sbjct: 83 LAETGSGKTAAFTIPILQSLLDKPQRLYALVLAPTRELCVQITEQFKALGSSIALDVCMI 142
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
+GG+D+++QA L RPH+++ +PGR+ LE KFLVLDEADR+L + F
Sbjct: 143 LGGLDMVSQALQLSKRPHIIVGSPGRLADHLENTKGFS--IETMKFLVLDEADRLLSMDF 200
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF 282
++ L + LPK R+T LFSATMTS + L ++S K + T + L Q+Y+
Sbjct: 201 DDALDKILNALPKERRTFLFSATMTSKVAKLQKVSLIKPVKIHVNTKYSTSQLLVQKYLL 260
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQ 342
IP K YL +L G +A+IF +TC L L L ++ LH SQ Q
Sbjct: 261 IPLKFKWTYLAALLMH---FGGYTAMIFCNTCLGAQKCCLYLRNLQITSICLHGKLSQMQ 317
Query: 343 RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402
RL AL+ FKSG ++ TDV SRGLDIP+VDLV+N+DIP+ +DY+HRVGRTARAGR G
Sbjct: 318 RLGALNGFKSGSYRTMVVTDVGSRGLDIPSVDLVINFDIPQSSKDYIHRVGRTARAGRTG 377
Query: 403 LAVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDG-- 459
A++ VTQ D++ IE +GK+LEEF + E LS +A R A + D
Sbjct: 378 TAITVVTQYDIEPFQRIEFALGKKLEEFVDITEDAALSKHEDYSQALRTAESESKDTANI 437
Query: 460 FEEKAK 465
F+ K K
Sbjct: 438 FKRKGK 443
>gi|195474915|ref|XP_002089735.1| GE19250 [Drosophila yakuba]
gi|194175836|gb|EDW89447.1| GE19250 [Drosophila yakuba]
Length = 527
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/416 (42%), Positives = 263/416 (63%), Gaps = 5/416 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL R
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLF 186
Query: 242 FSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM- 299
FSATM + ++ + A + + TV+TL Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFIKESSIFPIARDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKYR 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E+ + +IF +T + C LLS+ L+ +D + V LH F Q +R++AL RFKS Q L+
Sbjct: 247 EENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTLI 306
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHE 418
ATDVA+RGLDIP+V+LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 307 ATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLGA 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 482
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/437 (44%), Positives = 281/437 (64%), Gaps = 12/437 (2%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 55 TKSFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPI 114
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P + L++ PTRELAYQ++ F+ALGS + +RC V+VGGMD++ QA +L +
Sbjct: 115 LQALMEKPQSLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKK 174
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 175 PHIVVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 232
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATM+S +++L S +N + ++TV TL Q Y+FIP KD+YL+++L+
Sbjct: 233 TYLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHKYKDLYLVYLLN 292
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +SAI+F T L++LL L A+ LH SQS RL AL +F+S I
Sbjct: 293 EYAG---QSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDI 349
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A + VTQ D+++
Sbjct: 350 LVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLEVWL 409
Query: 418 EIEAVVGKQLEEFECKEQE--VLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKML 475
IE +GK+LEE++ +++E VLSD RV +A+R A ++ D EK R
Sbjct: 410 RIENALGKKLEEYKVEKEEVMVLSD--RVGEAQRHAITEMKD--LHEKRGSRGATLRGRR 465
Query: 476 AEKGSLKKRSEKRKKSG 492
KG+ + R + ++ G
Sbjct: 466 PAKGAKRGRDDMDREEG 482
>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
Length = 478
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/398 (46%), Positives = 259/398 (65%), Gaps = 6/398 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL + C LG + PT +QT IP L+ +D++GLA+TGSGKTAAFALPIL
Sbjct: 53 TFKDLGLIPQLCEACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQ 112
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P LV+ PTRELAYQ++E F+ALGS + +R V+VGGMD++ QA ++ RPH
Sbjct: 113 ALMDKPQPFFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH 172
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F + + + LP+ R+T
Sbjct: 173 IIVATPGRLLDHLENTKGFS--LRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTF 230
Query: 241 LFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM+S ++ L S +N + ++TV TL Q Y+FIP KDV+L+ +L+
Sbjct: 231 LFSATMSSKVEGLQRASLSNPLRVSVSSNKYQTVSTLLQYYLFIPHKHKDVHLIWLLN-- 288
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G +S IIF T L++L L A+ALH SQS RL AL +F+S IL+
Sbjct: 289 EHVG-QSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFRSRSRDILI 347
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VDLVLNYD+ + +VHR+GRTARAG+ G A+S VTQ DV++ I
Sbjct: 348 ATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRI 407
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
E + ++L E++ +++EVL RV +A+R A +L D
Sbjct: 408 EKALDRKLPEYKVEKEEVLILSDRVAEAQRQAITELKD 445
>gi|403217916|emb|CCK72408.1| hypothetical protein KNAG_0K00400 [Kazachstania naganishii CBS
8797]
Length = 432
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 188/436 (43%), Positives = 276/436 (63%), Gaps = 26/436 (5%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T T++FA LGLA W + + + + PT VQTHCIP IL+G++ +G A+TGSGKT AF
Sbjct: 3 TAQHTMSFADLGLAHWLCDSLQAMRIHTPTDVQTHCIPPILKGRNCIGGARTGSGKTLAF 62
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
A P+L + DP + +V+TPTRELA Q+ EQ ALG+ L++RC +VVGG D + Q+
Sbjct: 63 AGPMLTEWSRDPAALFGVVLTPTRELAVQIHEQLCALGAQLNIRCALVVGGGDFVQQSLE 122
Query: 175 LMNRPHVVIATPGRI-KVLLEEDPD--IPPVFSR-TKFLVLDEADRVLDVGFEEELRVVF 230
L RPH ++ATPGR+ ++ + P+ + + R T++LVLDEAD +L F +L V+
Sbjct: 123 LQGRPHFIVATPGRLAHHIISDTPEAALSSLLKRYTRYLVLDEADFLLTPTFASDLAVIL 182
Query: 231 QCLP--KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTV-------ETLKQQYI 281
LP +R+TLLF+AT+T +L+L A+ Y A + + +TL +Y+
Sbjct: 183 GALPDKTHRRTLLFTATVTDQ---VLQLREGDAFVYNAEDDSQLAPGRRQLPDTLTAEYL 239
Query: 282 FIPKNVKDVYLMHVL--SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
+P++VK+ YL H+L ++ ED +A++FV+ R+ LL L +L +LHS
Sbjct: 240 LVPEHVKEAYLYHILVSNEFED---STAVVFVNRTRTAELLRRTLYQLGVRVTSLHSQMP 296
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
QS+R ++LHRF++ A +L+ATDVA+RGLDIP V LV+NYD+P P +VHRVGRTARAG
Sbjct: 297 QSERANSLHRFRARAARVLVATDVAARGLDIPQVSLVVNYDVPSDPDTFVHRVGRTARAG 356
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE-CKEQEVL-SDITRVYKARRVATMKLMD 457
R G +V FVTQ DVD +H IE V + +F + V+ +T+ KA+R A M +
Sbjct: 357 RHGESVLFVTQRDVDRLHAIETRVATTIGQFSRVGDTAVIKKSLTQTSKAKRTAMMAMER 416
Query: 458 DGFEEKAKERKKQKLK 473
+GF E+ R +QKL+
Sbjct: 417 EGFGER---RAQQKLR 429
>gi|354546093|emb|CCE42822.1| hypothetical protein CPAR2_204650 [Candida parapsilosis]
Length = 443
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/427 (43%), Positives = 268/427 (62%), Gaps = 12/427 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S+ F LG+A W ++ + + +PT +Q CIP IL+G+D +G A+TGSGKT AFA P
Sbjct: 2 SSQPFQDLGVARWLSESLVAMKIHKPTSIQAACIPAILKGQDCIGGAKTGSGKTIAFAAP 61
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + +EDPYG+ LV+TPTRELA Q+AEQ+ ALG+ ++++ VVVGG D + QA L
Sbjct: 62 MLTQWSEDPYGIFGLVLTPTRELALQIAEQYTALGAQMNIKVCVVVGGEDFVKQALELQK 121
Query: 178 RPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH VIATPGR+ +L + R ++LVLDEADR+L F +L F LP +
Sbjct: 122 KPHFVIATPGRLADHILNSGEETISGLRRVRYLVLDEADRLLSNSFSSDLERCFSVLPSS 181
Query: 237 --RQTLLFSATMTSDLQTLLE--LSANK--AYFYEA--YEGFKTVETLKQQYIFIPKNVK 288
RQTLLF+AT+T ++ L E SA K + +E + TL +Y+F+P VK
Sbjct: 182 DRRQTLLFTATITDSVKALKEKPRSAGKLPVFMHEVDTVDKVAIPSTLSIEYVFVPSYVK 241
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL H + + +A++FV+ + +L L +LD +LHS QS+R ++LH
Sbjct: 242 EAYL-HSILLLPKYKESTAVVFVNRTITAEVLRRALRKLDFRVASLHSEMPQSERTNSLH 300
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RFK+G A IL+ATDVASRGLDIPTV+LV+N+DIP P D++HRVGRTARAGR G A+S +
Sbjct: 301 RFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISII 360
Query: 409 TQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMD-DGFEEKAKE 466
++ D++ I IE + K++E E + +V+ D + +M MD +GF E+ K
Sbjct: 361 SEKDIERIQSIEERINKKMELLEEINDDKVIKDSLGAMTTAKRESMSEMDKEGFGERRKI 420
Query: 467 RKKQKLK 473
K++ K
Sbjct: 421 NKRKHSK 427
>gi|17136814|ref|NP_476927.1| DEAD box protein 45A [Drosophila melanogaster]
gi|12643712|sp|Q07886.2|DDX49_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp45A;
Short=DEAD box protein 45A
gi|7303950|gb|AAF58994.1| DEAD box protein 45A [Drosophila melanogaster]
gi|16185764|gb|AAL13957.1| LD47509p [Drosophila melanogaster]
Length = 521
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/416 (42%), Positives = 264/416 (63%), Gaps = 5/416 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL R
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLF 186
Query: 242 FSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM- 299
FSATM + ++ + A+ + + TVETL Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYR 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E+ + +IF +T + C LLS+ L+ ++ + V LH F Q +R++AL RFKS Q L+
Sbjct: 247 EENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLI 306
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHE 418
ATDVA+RGLDIP+V+LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 307 ATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAA 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 433
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/396 (45%), Positives = 255/396 (64%), Gaps = 6/396 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG E + C L + T +Q +P+ EG+D++GLA+TGSGKT AF LPIL
Sbjct: 40 SFKSLGACETLQEACDRLEWKTATRIQASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQ 99
Query: 121 RLAEDPY-GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L P G AL++TPTRELA+Q+ + + LG + VVGG+D +QA +L P
Sbjct: 100 GLLRKPVKGTAALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAIALGRNP 159
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HVVIATPGR+ L++ ++ ++LVLDEADR+L + FEEEL + +P+ RQT
Sbjct: 160 HVVIATPGRLLDHLKDTKGFN--LNKVRYLVLDEADRMLSMDFEEELHQILDNMPEQRQT 217
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLFSATMT+ + L S + F+T + L Q Y+FIP KD YL ++++
Sbjct: 218 LLFSATMTTQVAKLERASLKDPVKVQVSTKFQTPKQLLQSYLFIPAKYKDCYLTYLIN-- 275
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E G +S ++F +TC + L+L+L L AV LH QS+RL AL +F SG TILL
Sbjct: 276 EHAG-QSILVFGATCNNVQRLALMLRNLGFPAVCLHGQMDQSKRLGALQKFSSGDRTILL 334
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDVASRGLD+P VDLV+N+D+P + ++Y+HRVGRTARAG+ G A++ VTQ DV++ +
Sbjct: 335 CTDVASRGLDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQYDVEVYQRL 394
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
EA++GK+L+E++ E+ VL + RV A+R+AT +L
Sbjct: 395 EALLGKKLDEWKTDEKTVLVLLERVSDAQRMATREL 430
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/464 (41%), Positives = 273/464 (58%), Gaps = 17/464 (3%)
Query: 18 KSKTRSKP-EPQPEPEPESKNAKTTQLEKFTNPDPN-----STTTDSTV-----TFAGLG 66
KSKT SK + + E KNA Q ++ + N T D T +F L
Sbjct: 12 KSKTHSKKLDARALAEKIKKNALKQQAQEEPAKEENVAENFDTVVDPTAELKFKSFNELK 71
Query: 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP 126
L ++ +++ +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL L E
Sbjct: 72 LIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQ 131
Query: 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATP 186
LV+ PTRELAYQ+ E F ALGS + LR +VGGMD++ QA+ LM +PH+++ATP
Sbjct: 132 AAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATP 191
Query: 187 GRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246
GRI LE K+LV+DEADR+LD+ F L + + +P R T LFSATM
Sbjct: 192 GRIMDHLEHTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLFSATM 249
Query: 247 TSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRS 306
T+ + L S + ++T + L Q + + K+ YL+H+L+ E +G +S
Sbjct: 250 TNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLN--EFLG-KS 306
Query: 307 AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366
IIF TC +LL L AV LH +Q+QRL +L++FK+G+A IL+ATDVA+R
Sbjct: 307 IIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATDVAAR 366
Query: 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ 426
GLDIP+VD+V+NYDIP + Y+HRVGRTARAG+ G ++S +TQ D+++ IE+V+GK+
Sbjct: 367 GLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESVLGKK 426
Query: 427 LEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
L + + VL D V+ R A F EK +K +
Sbjct: 427 LPKDPSPSKAVL-DTLHVHVDRASAEAIRQTKDFHEKRNPKKNR 469
>gi|223634733|sp|A5DQF1.2|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 181/409 (44%), Positives = 259/409 (63%), Gaps = 6/409 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF+ L L ++ ++L +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL
Sbjct: 65 TFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 124
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E ALV+ PTRELAYQ+ E F ALGSG+ +R +VGGMD++ QA+ LM +PH
Sbjct: 125 SLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGRI LE ++LV+DEADR+LD+ F L + + +P R T
Sbjct: 185 ILVATPGRIMDHLENTKGFS--LKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ + L S ++ ++T + L Q + + K+ +L+H+L+ E
Sbjct: 243 LFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLN--E 300
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
MG +S I+F TC +LL L AV LH +QSQRL +L++FKSG+A IL+A
Sbjct: 301 FMG-KSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIA 359
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAG+ G ++S VTQ D+++ IE
Sbjct: 360 TDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIE 419
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+V+G +L + ++VL+ + V+ R A F EK ++K+
Sbjct: 420 SVLGFKLPKDPSPPRDVLNAL-HVHVDRASAEAIKQTKDFHEKRTKKKR 467
>gi|45190904|ref|NP_985158.1| AER301Cp [Ashbya gossypii ATCC 10895]
gi|74693373|sp|Q756G5.1|DBP8_ASHGO RecName: Full=ATP-dependent RNA helicase DBP8
gi|44983946|gb|AAS52982.1| AER301Cp [Ashbya gossypii ATCC 10895]
gi|374108383|gb|AEY97290.1| FAER301Cp [Ashbya gossypii FDAG1]
Length = 435
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/428 (42%), Positives = 263/428 (61%), Gaps = 13/428 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+DS TF LG+A+W + + + +PT +Q CIP+IL G+D +G A+TGSGKT AFA
Sbjct: 2 SDSNSTFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFA 61
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
P+L + + DP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG D+++QA L
Sbjct: 62 APMLTKWSADPCGMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIVSQALEL 121
Query: 176 MNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
+PH +IATPGR+ ++ D R ++LVLDEAD +L F + L Q LP
Sbjct: 122 QRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFSDALATCVQILP 181
Query: 235 --KNRQTLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKN 286
+ RQ LLF+ATMT + L + ++ E + +L+ Y+ +P++
Sbjct: 182 PKEKRQNLLFTATMTDQVLALKDAPPTSGKPPLFSFHVENLDDLAVPASLQTTYLLVPEH 241
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
VK+ YL VLS E+ +SAI+FV+ S +L +L +L+ +LHS Q +R ++
Sbjct: 242 VKEAYLYQVLSS-EEYKSKSAIVFVNRTISAEILRRMLMQLEIRVTSLHSQMPQRERTNS 300
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L RF++ A +L+ATDVASRGLDIP V LV+NYDIP P Y+HR GRTARAGRGG A+S
Sbjct: 301 LQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALS 360
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL--SDITRVYKARRVATMKLMDDGFEEKA 464
F+ DV I IE +GK+++EF L + +V A+R + M + +GF E+
Sbjct: 361 FIAPKDVSRIQAIEERIGKKMDEFTKVGDTALIRKSLNKVTVAKRESLMAMDKEGFGERR 420
Query: 465 K-ERKKQK 471
K +R K K
Sbjct: 421 KTQRSKGK 428
>gi|164659074|ref|XP_001730662.1| hypothetical protein MGL_2458 [Malassezia globosa CBS 7966]
gi|159104558|gb|EDP43448.1| hypothetical protein MGL_2458 [Malassezia globosa CBS 7966]
Length = 452
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/442 (43%), Positives = 270/442 (61%), Gaps = 41/442 (9%)
Query: 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142
PTP+Q+ CIP ILEG+DV+G A+TGSGKT AFALPILH L +D G A+++TPTREL
Sbjct: 7 PTPIQSACIPAILEGRDVIGGAETGSGKTLAFALPILHNLFKDTVGGYAVILTPTRELGV 66
Query: 143 QLAEQFKALGSG--LHLRCEVVVGGMDLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDI 199
QL EQF A+G G + L+C +V+GGMD+ QA L RPH+++ATPGR+ LL
Sbjct: 67 QLHEQFLAVGQGSRMGLKCALVLGGMDMTRQANELGEQRPHIIVATPGRLVDLLSSGAAQ 126
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN--RQTLLFSATMTSDLQTLLELS 257
R KF+VLDEADR+L F L +F LP RQTLLF+AT+T +++ L E +
Sbjct: 127 EWGLERCKFVVLDEADRLLSPTFAPALAYLFSILPPAHMRQTLLFTATLTPEIERLTEKT 186
Query: 258 ANKAYFYEAYEGF----KTVETLKQQYIFIPKNVKDVYLMHVLSK--------------- 298
T ++L QQY +P ++++ YL+++L+
Sbjct: 187 PEPGKLPPLLRKIDMDTSTPDSLIQQYTLVPSHMREPYLVYLLNNPPCENKVKVHAELSD 246
Query: 299 ------------MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
E+ IIFVS C++ LLS +L EL V+LHS Q RL
Sbjct: 247 VYRTHKAPKIKGGEEPSFPLTIIFVSRCKNAELLSRMLTELGIPNVSLHSMLPQFTRLHN 306
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L F++ + IL++TDV SRGLD+P V+LV+N+D+P DY+HRVGRTAR GR G AVS
Sbjct: 307 LQMFRARRVPILISTDVGSRGLDVPDVELVVNWDVPAAWEDYIHRVGRTARKGRRGWAVS 366
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
FVT++DV+LI IEA + K+L+E E E +VL ++ + A+RVA+M+L D+ F E+ +E
Sbjct: 367 FVTEHDVELIQAIEAKIHKRLDELELPEAQVLDRLSHISAAKRVASMELHDEKFGEQ-RE 425
Query: 467 RKKQKLKMLAEKGSLKKRSEKR 488
R K+K K +A+ G KRS+ +
Sbjct: 426 RNKRKAK-IAQGG---KRSKHK 443
>gi|335308097|ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa]
Length = 473
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/343 (48%), Positives = 236/343 (68%), Gaps = 5/343 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 74 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 133
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 134 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 193
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 194 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 251
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 252 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 311
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 312 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 368
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAG
Sbjct: 369 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG 411
>gi|224137340|ref|XP_002322533.1| predicted protein [Populus trichocarpa]
gi|222867163|gb|EEF04294.1| predicted protein [Populus trichocarpa]
Length = 443
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 181/410 (44%), Positives = 259/410 (63%), Gaps = 18/410 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LGL + V+ C+ LG ++PT +Q IP L+GKD++G+A TGSGKT AF LP L
Sbjct: 11 TFADLGLCKELVEACENLGWKKPTKIQEEAIPYALQGKDLIGVAATGSGKTGAFVLPTLE 70
Query: 121 RLAED--------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
+ +D P+ V V++PTRELA Q+AEQF+ALGSG+ +RC V+VGG D+L Q+
Sbjct: 71 AILKDSQERKSVQPFFVC--VLSPTRELAIQIAEQFEALGSGIGVRCVVLVGGEDMLQQS 128
Query: 173 KSLMN-RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L RPHV++ TPGR+ L K+L+LDEADR+L + FE+ L + +
Sbjct: 129 IVLAKKRPHVIVGTPGRLADHLSNTKGFS--LHALKYLILDEADRLLSMDFEKSLDEILK 186
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
+P+NR+T LFSATMT+ L EA + V+TL+Q + F+P +KD Y
Sbjct: 187 AIPRNRRTYLFSATMTNKAGKLQRACLRNPVKIEAAFKYSIVDTLEQGFYFMPAALKDCY 246
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+HVLS + ++++F TCR L+L+L +L A+ ++ SQS RL AL++FK
Sbjct: 247 LVHVLSSKKGA---TSMVFTRTCRETDFLALVLRKLGLGAIPINGQMSQSNRLGALNKFK 303
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ IL+ TDVASRGLDI +VD+V+NY+IP +DY HRVGRTARAGR GLA+S V Q
Sbjct: 304 AGEFNILICTDVASRGLDILSVDVVVNYNIPTNAKDYFHRVGRTARAGRSGLAISLVNQF 363
Query: 412 DVDLIHEIEAVVGK--QLEEFECKEQEVLSDITRVYKARRVATMKLMDDG 459
D+ +IE +G ++ ++ E EVL RV +A+R++ + + G
Sbjct: 364 DIGPFKQIEKHIGDDFKIPKYTANEDEVLLLAERVTEAKRISRKSIQEGG 413
>gi|403222338|dbj|BAM40470.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 470
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/379 (44%), Positives = 249/379 (65%), Gaps = 8/379 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTF LG++ + CK+LG +RPT +Q IP L+GKD++GLA+TGSGKTAAF +PIL
Sbjct: 55 VTFEDLGVSPELCRACKQLGWKRPTKIQVEAIPVALQGKDIIGLAETGSGKTAAFTIPIL 114
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+L E P + +L++TPTREL+ Q+ EQ +LGS + L +++GG+D++TQA L +P
Sbjct: 115 QKLLEKPQRLFSLILTPTRELSLQIKEQLLSLGSEIGLDVCLILGGLDMVTQALQLSKKP 174
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+++ +PGR+ L+ KFLVLDEADR+L + F++ L + Q LPK R T
Sbjct: 175 HIIVGSPGRVADHLQNTKGFS--LETIKFLVLDEADRILSIDFDDSLNKIIQSLPKERIT 232
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
L+SATMTS L L +++ K + T + L Q+Y+ IP K YL VL K
Sbjct: 233 YLYSATMTSKLSKLQKVTLIKPININT--KYHTNQLLIQKYLLIPLKFKFTYLACVLWKF 290
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+ +IF +TC + +++ L+ L+ +++ LH +Q+QRL++L+ FK+G +L+
Sbjct: 291 PQ---STCMIFCNTCLTSQKVTIFLQNLEFKSICLHGKLTQTQRLNSLNSFKTGLKNVLV 347
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDV SRGLDIP VDLV+N+D+P+ +DY+HRVGRTARAG+ GL+V+F+TQ DV+ I
Sbjct: 348 VTDVGSRGLDIPLVDLVINFDVPQTSKDYIHRVGRTARAGKSGLSVTFITQYDVESFQRI 407
Query: 420 EAVVGKQLEEF-ECKEQEV 437
E + K+LEEF E E E+
Sbjct: 408 EYTLDKKLEEFTEVTENEM 426
>gi|345564525|gb|EGX47487.1| hypothetical protein AOL_s00083g423 [Arthrobotrys oligospora ATCC
24927]
Length = 451
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 268/431 (62%), Gaps = 31/431 (7%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T FA LG+ W V + + ++RPTP+Q CIP+IL+GK+ +G ++TGSGKT AFA+PI
Sbjct: 2 TTDFASLGVKPWLVTSLGAMAIKRPTPIQAACIPEILKGKNCIGGSRTGSGKTVAFAVPI 61
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A+DP+GV AL++TPTRELA QLAEQF ALGS +L+ +++GG+D+ TQA SL +
Sbjct: 62 LQMWAQDPFGVFALILTPTRELALQLAEQFTALGSPQNLKLSLIIGGVDMRTQAISLSQK 121
Query: 179 PHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN- 236
PHVVIATPGR+ + D R + +V+DEADR+LD GF EEL +P
Sbjct: 122 PHVVIATPGRLADHIRSSGADTIAGLRRVRVVVMDEADRLLDEGFAEELVECLSVVPDQF 181
Query: 237 ---------RQTLLFSATMTSDLQTL-------LELSANKAYFYEA-YEGFKTVETLKQQ 279
RQTLLF+AT+T ++ L E + + E + TL Q
Sbjct: 182 GDKTKGIPARQTLLFTATVTESVRALKEGEGRAREKGGREVFISEIDTDSLAVPPTLHQT 241
Query: 280 YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
YIF P V +L +LS ++ +S IIF + + LLS L+ L LHS S
Sbjct: 242 YIFKPSTVHLAFLHTLLSTPGNIK-KSTIIFTNKKTTAQLLSHTLKPLGHRVTPLHSDLS 300
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
Q +R +L RF++G A IL+ATDVA RGLDIP V+LV+N+D+PR P DY+HR+GRTARAG
Sbjct: 301 QRERTDSLGRFRAGAARILIATDVAGRGLDIPEVELVINFDVPRDPDDYIHRIGRTARAG 360
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLS--------DITRVYKARRVA 451
+ G +++FV + DV LI IE VG+++ E+ KE+E +S ++ +V +A+RVA
Sbjct: 361 KKGESLTFVDEKDVLLIKAIEERVGREMVEY--KEEEGVSLEGRVVREELKKVSEAKRVA 418
Query: 452 TMKLMDDGFEE 462
+ + ++G +E
Sbjct: 419 MLNI-EEGRDE 428
>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
gi|218512022|sp|Q6BGU8.2|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
Length = 441
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 188/433 (43%), Positives = 268/433 (61%), Gaps = 15/433 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+++W + + + PT +Q+ CIPKIL+G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDP G+ LV+TPTRELA Q+AEQF ALGS ++++ V+VGG D++ QA L RP
Sbjct: 61 TQWSEDPSGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALELQRRP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN-- 236
H V+ATPGR+ +L D R K+L+LDEADR+L F +L F LP
Sbjct: 121 HFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPSTDK 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE------TLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L + K +TV+ TL +Y+F+P VK+
Sbjct: 181 RQTLLFTATVTDAVRALKDRPVPKGKLPVFIHEVETVDKVAIPSTLSVKYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L+ + +IIF + + LL L +L+ +LHS Q++R ++LHRF
Sbjct: 241 YLHSILN-LPQYSDSLSIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIPTV+LV+NYDIP D++HRVGRTARAGR G A+S V +
Sbjct: 300 KAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERK 468
DVD I IE + K+++ E + +V+ D + + A+R A M + + F EK RK
Sbjct: 360 KDVDRILAIEERINKKMDLIEDISDNKVIKDSLNKTSVAKREAFMDMDRENFGEK---RK 416
Query: 469 KQKLKMLAEKGSL 481
K K A +G++
Sbjct: 417 INKSKRQANEGTI 429
>gi|195120383|ref|XP_002004708.1| GI20069 [Drosophila mojavensis]
gi|193909776|gb|EDW08643.1| GI20069 [Drosophila mojavensis]
Length = 521
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 182/416 (43%), Positives = 261/416 (62%), Gaps = 5/416 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W + +LG++ TP+Q +CIP IL GKD +G A+TGSGKT AFALPIL +
Sbjct: 9 FLKLGLRPWLAKQLTKLGLKGVTPIQENCIPPILAGKDCIGAAKTGSGKTFAFALPILEK 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F KFLV+DEADR+L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKFLVVDEADRMLNGDFDESLAIIERCLPKTRQNLF 186
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEG-FKTVETLKQQYIFIPKNVKDVYLMHVLSKM- 299
FSATM ++ +K + E TVETL+Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFMKESSIFPISKDLMEWSQESDVATVETLEQRYLLCADYDRDMVLIEALRKFR 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E+ + +IF +T + C LLS+ L ++ E V LH F Q +R++AL RFKS L+
Sbjct: 247 EENENANVMIFTNTKKYCQLLSMTLASMEIENVCLHGFMRQKERVAALSRFKSNHIRTLI 306
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHE 418
ATDVA+RGLDIP+V LV+N+ +PR P++Y+HRVGRTARAGR GLA+S F D++L+
Sbjct: 307 ATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLELLGA 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IEA + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 367 IEAEINCKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|209877961|ref|XP_002140422.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209556028|gb|EEA06073.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 442
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 175/404 (43%), Positives = 255/404 (63%), Gaps = 6/404 (1%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
S T +TFA LG+ + C+ LG +PT +Q IP L G D++GLA+TGSGKT
Sbjct: 22 SNKTMENITFASLGVCKELCLACESLGWLKPTDIQREAIPIALRGGDIIGLAETGSGKTG 81
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AF LPIL L E+ + ++V+ PTREL Q++EQF ALGS + L+ +VGGMD++ QA
Sbjct: 82 AFILPILQSLLENQSRMYSVVLAPTRELCVQISEQFSALGSLISLQVANIVGGMDMVNQA 141
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
SL +PH+++A+PGR+ LE S K+LV+DEADR+L + FE L + +
Sbjct: 142 LSLAKKPHIIVASPGRLVDHLENTKGFN--ISSVKYLVMDEADRLLSMDFEIALTKIIEA 199
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
PKNR T LFSATMT+ + L +S + T E L Q Y+FIP K YL
Sbjct: 200 CPKNRNTYLFSATMTTKVAKLQRVSLKNPVKICVNTKYDTAENLLQYYMFIPFKFKWSYL 259
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+ ++ +++ + IIF +TC SC +LL+++L +V LH +Q+QRL+AL++FKS
Sbjct: 260 VILV---QNLSQYTGIIFTNTCISCKRGALLMQQLGFSSVCLHGRMNQTQRLAALNQFKS 316
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
Q +L T+V SRGLDIP VD V+N+DIP +DYVHRVGRTARAGR G A+S VTQ D
Sbjct: 317 KQRHLLFTTEVGSRGLDIPHVDFVINFDIPMSSKDYVHRVGRTARAGRSGKAISLVTQYD 376
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKL 455
V++ +E + K+L+E+ + + ++++ +V +A R+ ++L
Sbjct: 377 VEMFQRVEFALNKKLDEYSDINKDQMMAIHGKVLEALRITDIEL 420
>gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica]
gi|74659870|sp|Q6C799.1|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8
gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica CLIB122]
Length = 442
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 181/439 (41%), Positives = 275/439 (62%), Gaps = 10/439 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL EW ++ + + +P+ +Q CIP+I++GKD +G A+TGSGKT AFA P+L
Sbjct: 1 MSFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
++DP G+ LV+TPTRELA Q+AEQF ALG+ +++R ++ GG+D++ Q+ L P
Sbjct: 61 AEWSKDPCGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKN 236
H VIATPGR+ + D F R +++V+DEADR+L GF +L+ L P
Sbjct: 121 HFVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDEADRLLTPGFVPDLKTCMDLLPDPSK 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKA--YFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLF+AT+T ++ L + + K + +E TL Q Y+F+P V++ YL
Sbjct: 181 RQTLLFTATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAYLWA 240
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L+ D +SAIIFV+ ++ L +L LD + +LHS Q +R++AL RF++
Sbjct: 241 ILTH-PDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQA 299
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
A +L+ATDVASRGLDIPTV++V+N+D+P DY+HRVGRTARAGR G +VS VT+ DV
Sbjct: 300 ARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVT 359
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSD--ITRVYKARRVATMKLMDDGFEEKAK-ERKKQK 471
+ IE VG ++E+++ E + + + +T A+R A + + + F E+ + +RKK
Sbjct: 360 RVTNIEERVGTKMEKYDLIEDDKVVEEYLTPASTAKRQAVLDMEAENFGERKRIQRKKAG 419
Query: 472 LKM-LAEKGSLKKRSEKRK 489
L + + K KR K K
Sbjct: 420 LDVDMKSKNKKPKRVAKGK 438
>gi|300120679|emb|CBK20233.2| unnamed protein product [Blastocystis hominis]
Length = 536
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 267/439 (60%), Gaps = 39/439 (8%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL EW V+ + + RPTPVQ +CIP++L GK+V G+++TGSGKTA FALPIL
Sbjct: 48 LTFADLGLNEWVVKCVNSMQITRPTPVQKYCIPEVLAGKNVTGVSETGSGKTAVFALPIL 107
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
RL+ DPYG+ A+V+TPTRELA Q+ +Q +A G+ +H+R +++GG + QA++L RP
Sbjct: 108 QRLSTDPYGIFAVVLTPTRELAIQIDDQMQAFGAPIHVRTTLIIGGQSFVKQAEALRKRP 167
Query: 180 HVVIATPGR-IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR- 237
HVVIATPGR ++ L D PPV R F+VLDE DR+L + E+ + L K+R
Sbjct: 168 HVVIATPGRFLQHLKTAD---PPVTKRLGFIVLDECDRMLSDSLKTEVSEIVSLL-KSRC 223
Query: 238 ----QTLLFSATMTSDL-------------QTLLELSANKAYFYEAY-EGFKTVETLKQQ 279
Q L +AT + + Q +++ + Y EA + TV++L +
Sbjct: 224 VTHPQFLFLTATYDASVRSELVEFAEIAHPQKSMDIIPDYEYIPEASKQTNSTVDSLDEF 283
Query: 280 YI----------FIPKNVKD----VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE 325
Y+ F P N + +K + SAI+F +TCR LLS +L
Sbjct: 284 YLLTPDHQYEPRFSPSNPVNPREDAEESEEDAKKRLLHKASAIVFCNTCRMVQLLSEMLR 343
Query: 326 ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP 385
E V LHS SQ+QR +AL +F++ + +L+ TDVASRGLDIP VDLV NYD+P+ P
Sbjct: 344 AFQIENVPLHSLLSQNQRDAALAKFRNNRTAVLVCTDVASRGLDIPQVDLVTNYDLPKDP 403
Query: 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE-VLSDITRV 444
DY+HRVGRTARAGR G AVSFVT V + IEA+ GK+ EFE E+E VL + RV
Sbjct: 404 FDYIHRVGRTARAGRAGTAVSFVTLPSVGKLQAIEAMTGKRCREFEGVEEENVLKILNRV 463
Query: 445 YKARRVATMKLMDDGFEEK 463
++ RVA ++++G E K
Sbjct: 464 GRSLRVARQFMVENGLETK 482
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 184/407 (45%), Positives = 260/407 (63%), Gaps = 6/407 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
D NST+ ++ TF+ L L +Q CK L +PTP+Q+ IP L+G D++GLAQTGSG
Sbjct: 74 DENSTSYETFETFSELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSG 133
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+ L D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 134 KTAAFAIPILNSLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMM 193
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PHV+IATPGR+ LE + K+LV+DEADR+LD+ F L +
Sbjct: 194 DQARDLMRKPHVIIATPGRLMDHLENTKGFS--LRKLKYLVMDEADRLLDMEFGPVLDRI 251
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ LP + R T LFSATMTS + L S ++TV+TL Q I +P +K
Sbjct: 252 LKILPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLK 311
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L+++L+ E +G +S IIF T + +S L L+ A ALH +Q+QR AL
Sbjct: 312 NTFLIYLLN--EYIG-KSTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALD 368
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ TIL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 369 LFKAGRKTILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV 428
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+Q D++LI IE V+GK+L + ++ +L+ V KA M+L
Sbjct: 429 SQYDLELILRIEEVLGKKLPKETVDKEMILTLRDSVDKADGEVIMEL 475
>gi|195455578|ref|XP_002074783.1| GK23245 [Drosophila willistoni]
gi|194170868|gb|EDW85769.1| GK23245 [Drosophila willistoni]
Length = 506
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 274/454 (60%), Gaps = 28/454 (6%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL W + ++G++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL
Sbjct: 8 SFQALGLRPWLAKQLTKVGLKDATPIQKSCIPAILSGQDCIGAAKTGSGKTFAFALPILE 67
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH
Sbjct: 68 KLSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPH 127
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+V+A PGR+ L F K+LV+DEADR+L+ F+ L ++ + LPK RQ L
Sbjct: 128 IVVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDASLAIIEKSLPKARQNL 185
Query: 241 LFSATMTSDLQ-TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
FSATM ++ + + AN+ + + TV+TL Q+Y+ +D+ L+ L K
Sbjct: 186 FFSATMKDFIKDSSIFPIANECFEWSEESQVATVDTLDQRYLLCADYDRDMVLIEALRKY 245
Query: 300 EDMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
D S + IF +T + C LLS+ L+ LD E V LH F Q +R++A+ RFKS L
Sbjct: 246 RDENPNSNVMIFTNTKKYCQLLSMTLQNLDIENVCLHGFMRQKERVAAISRFKSNHIRTL 305
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIH 417
+ATDVA+RGLDIP+V LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 306 IATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRSGMSISIFRFPRDLELLG 365
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE----------- 466
IE + +L+E ++ V +V RR + MKL ++ F+E+A+
Sbjct: 366 SIEDEINTKLQEHPIDQRMVERIFMQVNVTRRESEMKLDNNDFDERAQNYRRKTWIIEGK 425
Query: 467 ---------RKKQKLKMLAEKGSLKKRSEKRKKS 491
RKKQK K+ K +KR E+++KS
Sbjct: 426 DPDQMEALYRKKQKDKL---KEIRRKRKEQQEKS 456
>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 181/409 (44%), Positives = 258/409 (63%), Gaps = 6/409 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L ++ ++L +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL
Sbjct: 65 TFLELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 124
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E ALV+ PTRELAYQ+ E F ALGSG+ +R +VGGMD++ QA+ LM +PH
Sbjct: 125 SLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGRI LE ++LV+DEADR+LD+ F L + + +P R T
Sbjct: 185 ILVATPGRIMDHLENTKGFS--LKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ + L S ++ ++T + L Q + + K+ +L+H+L+ E
Sbjct: 243 LFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLN--E 300
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
MG +S I+F TC +LL L AV LH +QSQRL +L++FKSG+A IL+A
Sbjct: 301 FMG-KSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIA 359
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAG+ G ++S VTQ D+++ IE
Sbjct: 360 TDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIE 419
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+V+G +L + ++VL+ + V+ R A F EK ++K+
Sbjct: 420 SVLGFKLPKDPSPPRDVLNAL-HVHVDRASAEAIKQTKDFHEKRTKKKR 467
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 186/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH+VIATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIVIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>gi|440475921|gb|ELQ44569.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae Y34]
Length = 906
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 260/398 (65%), Gaps = 12/398 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ E + C+ L ++PTP+Q IP L+G+DV+G+A+TGSGKTAAFALPI
Sbjct: 109 TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPI 168
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P + LV+ PTRELA Q+ + F+ALG+ + LRC VVVGG+D+++Q+ +L +
Sbjct: 169 LQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKK 228
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ LE+ KFLV+DEADR+LD+ F L + + LP+ R+
Sbjct: 229 PHIVVATPGRLLDHLEKTKGF--SLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERR 286
Query: 239 TLLFSATMTSDLQTLLELSAN---KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
T LFSATM+S +++L S K + E KTV TL Q +FIP KDVYL+++
Sbjct: 287 TFLFSATMSSKVESLQRASLRDPLKVSVSSSQE--KTVSTLIQNPLFIPHKHKDVYLIYL 344
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
++ ++ I+F T +S+LL L A+ LH SQS RL AL++FK+
Sbjct: 345 ANEFAG---KTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSR 401
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP VDLV+N+D+P+ Y+HRVGRTARAGR G A+S +TQ D++L
Sbjct: 402 DILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLEL 461
Query: 416 IHEIE--AVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IE A+ G++L F+ ++EV+ RV +A+R A
Sbjct: 462 WLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQRHA 499
>gi|430813904|emb|CCJ28790.1| unnamed protein product [Pneumocystis jirovecii]
Length = 464
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 179/420 (42%), Positives = 268/420 (63%), Gaps = 13/420 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF GL W ++T K++ +++PT +Q CI ILEG++ +G A+TGSGKT AF LPI+
Sbjct: 43 TFKECGLHAWLIETLKKVSIKKPTAIQATCIGPILEGQNCIGSAKTGSGKTMAFTLPIIQ 102
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L++DPYGV AL++TPTRELA Q+++Q +G+ ++L+ ++GG+D++TQA L+ RPH
Sbjct: 103 ILSQDPYGVFALILTPTRELALQISDQLAIIGTSINLKHTTIIGGVDMITQALILVKRPH 162
Query: 181 VVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--NR 237
+VIATPGR+ + + F R +FLVLDEADR+L F ++++ + LPK NR
Sbjct: 163 IVIATPGRLADHIRSSGQETINAFKRVRFLVLDEADRLLTPNFSKDMQECIRILPKAENR 222
Query: 238 QTLLFSATMTS---DLQTLLELSANKAYF-YEAYEGFKTV-ETLKQQYIFIPKNVKDVYL 292
QTLLF+AT+T LQT S K F Y + T+ +L Q YIFIP +VK+ YL
Sbjct: 223 QTLLFTATITDAIRKLQTQSSESGKKPLFLYNVIKSSVTIPSSLIQTYIFIPSHVKETYL 282
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+ + E +S I+F + R+ LL + L+ + ALHS Q +R+ +L RFK+
Sbjct: 283 YRIFNTQE-YKEKSTIVFTNRTRTAELLCRMFCILELKVTALHSEMPQKKRIQSLERFKA 341
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
+ IL+ATDVASRGLDIP V L++NYD+P+ P DY+HRVGRTARA + G +++FV+Q D
Sbjct: 342 EASKILIATDVASRGLDIPFVKLIINYDVPKDPNDYIHRVGRTARAEKSGESITFVSQRD 401
Query: 413 VDLIHEIEAVVGKQLEEFE-CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
+ LI IE + ++E+ + +V ++ V A+ A + + + G K +E K+K
Sbjct: 402 ILLIQAIEKHISTRMEKNSYISDFKVTQELNTVSSAKIEAEISMTNFG---KLRENNKRK 458
>gi|195379947|ref|XP_002048732.1| GJ21163 [Drosophila virilis]
gi|194143529|gb|EDW59925.1| GJ21163 [Drosophila virilis]
Length = 519
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/416 (42%), Positives = 260/416 (62%), Gaps = 5/416 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W + +LG++ TP+Q +CIP IL GKD +G A+TGSGKT AFALPIL +
Sbjct: 9 FQKLGLRPWLAKQLTKLGLKGVTPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILEK 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLF 186
Query: 242 FSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
FSATM + ++ + A + TV+TL+Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFMKESSIFPIAKDCLEWSQESDVATVDTLEQRYLLCADYDRDMVLIEALRKYR 246
Query: 301 DMGIRSAI-IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+ + + IF +T + C LLS+ L ++ E V LH F Q +R++AL RFKS L+
Sbjct: 247 EQNENANVMIFTNTKKYCQLLSMTLSSMEIENVCLHGFMRQKERVAALSRFKSNHIRTLI 306
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHE 418
ATDVA+RGLDIP+V LV+N+ +PR P++Y+HRVGRTARAGR GLA+S F D++L+
Sbjct: 307 ATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLELLGA 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IEA + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 367 IEAEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 113 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 172
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 173 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 232
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 233 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 290
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 291 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 350
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 351 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 407
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 408 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 467
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 468 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 527
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 528 RRGRMMTRENMDMGER 543
>gi|254580331|ref|XP_002496151.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
gi|238939042|emb|CAR27218.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
Length = 435
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 267/426 (62%), Gaps = 11/426 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S +F LG+++W V+T + + +PT +Q+ CIP+IL+G+D +G A+TGSGKT AF P
Sbjct: 5 SVKSFKILGVSKWLVETLNAMKISQPTTIQSACIPEILKGRDCIGGAKTGSGKTIAFGAP 64
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R ++VGG D++ Q L
Sbjct: 65 MLTKWSEDPCGMFGVVLTPTRELAMQIAEQFTALGSNMNIRVSIIVGGEDIVKQGLELQR 124
Query: 178 RPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PK 235
+PH +IATPGR+ +L D RTKFLVLDEAD +L F ++L + L PK
Sbjct: 125 KPHFIIATPGRLAHHILNSGDDTVGGLIRTKFLVLDEADSLLTGTFAKDLAICIGALPPK 184
Query: 236 N-RQTLLFSATMTSDLQTLLELSANKA---YFYEAYEGFKTV--ETLKQQYIFIPKNVKD 289
N RQTLLF+AT+T ++ L + + YE K +LK +YI +P+ VK+
Sbjct: 185 NKRQTLLFTATVTDQVRALENAPSEGKPPLFTYEVASMDKVAIPSSLKTEYILVPEYVKE 244
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL +L+ ED +A++FV+ + +L L + +LHS Q +R ++LHR
Sbjct: 245 AYLYQLLT-CEDYKDSTAMVFVNRTMAAEILRRTLYAMGVRVTSLHSQMPQQERTNSLHR 303
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
F++ A +L+ATDVASRGLDIPTV LV+NYDIP P ++HR GRTARAGR G A+SF+T
Sbjct: 304 FRANAARVLIATDVASRGLDIPTVQLVVNYDIPSDPDVFIHRSGRTARAGRRGDAISFIT 363
Query: 410 QNDVDLIHEIEAVVGKQLEEFE-CKEQEVL-SDITRVYKARRVATMKLMDDGFEEKAKER 467
Q D+ I IE + K++ E + + V+ + V KA+R + M + + F EK +R
Sbjct: 364 QRDISRIQAIEERINKKMGECDKVHDTAVIRKSLNSVTKAKRESLMAMEKENFGEKKIQR 423
Query: 468 KKQKLK 473
KK+ K
Sbjct: 424 KKKNQK 429
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 113 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 172
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 173 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 232
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 233 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 290
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 291 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 350
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 351 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 407
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 408 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 467
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 468 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRGSVDKANGEVVMEMNRRNKEKIARGKG 527
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 528 RRGRMMTRENMDMGER 543
>gi|194753610|ref|XP_001959103.1| GF12227 [Drosophila ananassae]
gi|190620401|gb|EDV35925.1| GF12227 [Drosophila ananassae]
Length = 522
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 175/417 (41%), Positives = 262/417 (62%), Gaps = 7/417 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W + +LG++ TP+Q +CIP IL G+D +G A+TGSGKT AFALPIL +
Sbjct: 9 FQSLGLRPWLAKQLTKLGLKGATPIQQNCIPAILSGRDCIGAAKTGSGKTFAFALPILEK 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLF 186
Query: 242 FSATMTSDLQ--TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
FSATM ++ ++ +S + + TVETL Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFMKESSIFPISKD-CLEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY 245
Query: 300 -EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E+ + +IF +T + C LLS+ L+ +D + V LH F Q +R++AL RFKS L
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNHIRTL 305
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIH 417
+ATDVA+RGLDIP+V LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 306 IATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLG 365
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + ++ E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 366 AIEEEINTKMTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ +L
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>gi|323304640|gb|EGA58403.1| Dbp8p [Saccharomyces cerevisiae FostersB]
Length = 412
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 180/405 (44%), Positives = 261/405 (64%), Gaps = 12/405 (2%)
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
+ + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L + +EDP G+ +V+TPT
Sbjct: 1 MKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGVVLTPT 60
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEED 196
RELA Q+AEQF ALGS +++R V+VGG ++ QA L +PH +IATPGR+ ++
Sbjct: 61 RELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAHHIMSSG 120
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQTLLFSATMTSDLQTLL 254
D R K+LVLDEAD +L F + L LP RQTLLF+AT+T +++L
Sbjct: 121 DDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITDQVKSLQ 180
Query: 255 ELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
K AY E+ + TLK +YI +P++VK+ YL +L+ E+ ++AI
Sbjct: 181 NAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLT-CEEYENKTAI 239
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IFV+ + +L L++L+ +LHS Q +R ++LHRF++ A IL+ATDVASRGL
Sbjct: 240 IFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGL 299
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ DV I IE + K++
Sbjct: 300 DIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMT 359
Query: 429 EF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
E + + V+ +T+V KA+R + M + + F E+ +++KK++
Sbjct: 360 ETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKKQ 404
>gi|255942321|ref|XP_002561929.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586662|emb|CAP94307.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 520
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 265/428 (61%), Gaps = 16/428 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA L +A W V + + ++RPT +Q CIP+IL+GKD +G ++TGSGKT AFA+PI+
Sbjct: 91 TFAELDVAPWLVSSLATMAIKRPTAIQKACIPEILKGKDCIGGSRTGSGKTMAFAVPIMQ 150
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ A +P+G+ ALV+TPTRELA Q+ EQF+A+ + +++ +VVGGMD+ QA L +RPH
Sbjct: 151 QWARNPFGIYALVLTPTRELALQIYEQFRAVSAPQNMKPILVVGGMDMRQQAIELASRPH 210
Query: 181 VVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-----P 234
VVIATPGR+ ++ D R K +VLDEADR+L G L V CL
Sbjct: 211 VVIATPGRLADHIKTSGEDTVAGLRRVKMVVLDEADRLLASGPGSMLPDVETCLGALPPS 270
Query: 235 KNRQTLLFSATMTSDLQTLLELSA--NKAYFYEAYEGF----KTVETLKQQYIFIPKNVK 288
RQTLLF+ATMT++++ L + A NK + G K TLKQ Y+ +P +
Sbjct: 271 AERQTLLFTATMTAEVRALKSMPAAGNKPPIFMTEIGTENQGKIPPTLKQTYLKVPMTHR 330
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L H L E + I+F + ++C LL L L +LHS QS+R + L
Sbjct: 331 EAFL-HALLSTEVNVTKPVIVFCNHTKTCDLLERTLRRLGHRITSLHSILPQSERTANLA 389
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A +L+ATDVASRGLDIP+V+LV+NY++PR P DYVHRVGRTARAGR G A + +
Sbjct: 390 RFRATAARVLVATDVASRGLDIPSVELVINYEVPRNPDDYVHRVGRTARAGRSGEATTLI 449
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE-- 466
Q DV+L+ IE VG+Q+EEF + + S + R + V + K G ++ ++
Sbjct: 450 GQRDVELVLAIEERVGRQMEEFAQEGVNIESRVVRTGLLKEVGSAKREAAGEIDEGRDIL 509
Query: 467 -RKKQKLK 473
RK+ KLK
Sbjct: 510 GRKRNKLK 517
>gi|223590193|sp|A5DLE0.2|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
6260]
Length = 433
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 182/425 (42%), Positives = 267/425 (62%), Gaps = 16/425 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+++W ++ + +R PT +Q CIP+IL G+D +G A+TGSGKT AFA P++
Sbjct: 1 MSFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMM 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDP+G+ LV+TPTRELA Q+AEQF ALG+ ++++ VVVGG D++ QA + P
Sbjct: 61 TKWSEDPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KN 236
H +IATPGR+ +L D R KFLVLDEADR+L F +L F+ LP
Sbjct: 121 HFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPDASK 180
Query: 237 RQTLLFSATMTSDLQTLLEL---SANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L + K F V TL Y+F+P VK+
Sbjct: 181 RQTLLFTATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYVKEA 240
Query: 291 YLMHVL--SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
YL ++L K E SAI+FV+ + +L L +LD +LHS QS+R ++LH
Sbjct: 241 YLHNILVSPKYEKA---SAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLH 297
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++G A +L+ATDVASRGLDIP V+LV+N DIP P DY+HRVGRTARAG+ G +VS V
Sbjct: 298 RFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIV 357
Query: 409 TQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKE 466
++ DV+ I IE + K+++ E + +++ + ++ V A+R + + +GF EK K
Sbjct: 358 SEKDVERILAIENHINKKMDLLEEVNDDKIIKESLSIVTAAKRESVADMEKEGFGEKRKI 417
Query: 467 RKKQK 471
K+++
Sbjct: 418 NKRKR 422
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/436 (42%), Positives = 270/436 (61%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ + +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDEXFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRXSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 113 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 172
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 173 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 232
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 233 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 290
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 291 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 350
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ +L
Sbjct: 351 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLD 407
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 408 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 467
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 468 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 527
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 528 RRGRMMTRENMDMGER 543
>gi|406860112|gb|EKD13172.1| ATP-dependent rRNA helicase RRP3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 497
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 189/464 (40%), Positives = 276/464 (59%), Gaps = 28/464 (6%)
Query: 33 PESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIP 92
PES T E+ T+ +F LG+ + C LG + PTP+Q IP
Sbjct: 44 PESTPIATKVPEETVTVGGEEAQTEVPTSFKDLGIVDELCDACTALGYKAPTPIQAESIP 103
Query: 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152
L+ +D++ LA+TGSGKTAAFALPIL L + P LV+ PTRELAYQ+++ F+ALG
Sbjct: 104 LALQDRDLIALAETGSGKTAAFALPILQSLLDKPQPFFGLVLAPTRELAYQISQSFEALG 163
Query: 153 SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLD 212
S + +RC V+VGGMD++ QA +L +PH+++A+PGR+ LE K+LV+D
Sbjct: 164 SKIGVRCAVIVGGMDMVPQAIALGKKPHIIVASPGRLLDHLENTKGFS--LRALKYLVMD 221
Query: 213 EADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKT 272
EADR+LD+ F + + + +P+ R+T LFSATM+S +++L S ++T
Sbjct: 222 EADRLLDLDFGAIIDKILKVIPRERRTYLFSATMSSKVESLQRASLKDPLRVSVSTKYQT 281
Query: 273 VETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV 332
V TL Q + +P KDVYL+++ M + +SAIIF T L++LL L A+
Sbjct: 282 VSTLIQNCLIVPLVHKDVYLVYL---MNEFAGQSAIIFTRTVNETQRLAILLRSLGFGAI 338
Query: 333 ALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRV 392
LH SQ+ RL AL++F++G IL+ATDVA+RGLDIP+VD+VLNYD+P + Y+HRV
Sbjct: 339 PLHGQLSQTARLGALNKFRAGTRKILVATDVAARGLDIPSVDIVLNYDLPPESKTYIHRV 398
Query: 393 GRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVAT 452
GRTARAG+ G A S VTQ DV++ EA + ++ +E ++EV+ V+KAR
Sbjct: 399 GRTARAGKSGHAFSIVTQYDVEIFTRTEAALKIRMPVYEPVKEEVM-----VFKAR---- 449
Query: 453 MKLMDDGFEEKAKERKKQKLKMLAE----KGSLKKRSEKRKKSG 492
E+A+ + ++K L E KGS+ K +R K+G
Sbjct: 450 --------VEEAQRHARNEMKNLHEDRGNKGSILK--GRRPKTG 483
>gi|212527694|ref|XP_002144004.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces marneffei
ATCC 18224]
gi|210073402|gb|EEA27489.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces marneffei
ATCC 18224]
Length = 538
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 195/448 (43%), Positives = 272/448 (60%), Gaps = 30/448 (6%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TDST FA L +A W V++ + +RRPT +Q CIP+IL+GKD +G ++TGSGKT AFA
Sbjct: 106 TDST--FATLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILKGKDCIGGSRTGSGKTIAFA 163
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL + AEDP+GV A+V+TPTRELA Q+ EQFKA+ + L+ ++ GG D+ QA +L
Sbjct: 164 VPILQKWAEDPFGVFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIAL 223
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCL- 233
RPHV+IATPGR+ + + V +R + +V+DEADR+L G L V CL
Sbjct: 224 SQRPHVIIATPGRLADHIRTSGEDTIVGLNRVRMVVMDEADRLLTSGQGSMLPDVETCLS 283
Query: 234 ----PKNRQTLLFSATMTSDLQTLLEL--SANKAYFYEAYEGFKT----VETLKQQYIFI 283
RQTLLF+AT+T +++ L + AN+ + G + TLKQ Y+ +
Sbjct: 284 ALPPSSERQTLLFTATVTPEVRALKSMPRPANRPPIHVTEIGTENHAPIPPTLKQTYLQV 343
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P ++ +L HVL E + AIIF + R+ LL +L L +LHS QS+R
Sbjct: 344 PMTHREAFL-HVLLSTERNSTKPAIIFCNRTRTADLLERILRRLSHRVTSLHSLLPQSER 402
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A +L+ATDVASRGLDIP V LV+N+D+PR P DYVHRVGRTARAGR G
Sbjct: 403 TANLSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGE 462
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
+V+ V Q DV L+ IE VG+Q+ E+ E+E +S TRV K G ++
Sbjct: 463 SVTLVGQRDVQLVLAIEKRVGRQMIEW---EEEGVSVETRVVKG-----------GILKE 508
Query: 464 AKERKKQKLKMLAE-KGSLKKRSEKRKK 490
E K+ + + E + L +R+ K KK
Sbjct: 509 VGEAKRDAAREIDEGRDVLGRRTNKLKK 536
>gi|448527184|ref|XP_003869451.1| Dbp8 protein [Candida orthopsilosis Co 90-125]
gi|380353804|emb|CCG23316.1| Dbp8 protein [Candida orthopsilosis]
Length = 443
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 181/424 (42%), Positives = 268/424 (63%), Gaps = 12/424 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S+ F LG+A W ++ + + + +PT +Q CIP IL+G+D +G A+TGSGKT AFA P
Sbjct: 2 SSQPFQDLGVARWLSESLEAMKINKPTSIQAACIPAILKGQDCIGGAKTGSGKTIAFAAP 61
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + +EDPYG+ LV+TPTRELA Q+AEQ+ ALG+ ++++ VVVGG D + QA L
Sbjct: 62 MLTQWSEDPYGIFGLVLTPTRELALQIAEQYTALGAQMNIKVCVVVGGEDFVKQALELQK 121
Query: 178 RPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH VIATPGR+ +L + R ++LVLDEADR+L F +L F LP +
Sbjct: 122 KPHFVIATPGRLADHVLNSGEETVSGLRRVRYLVLDEADRLLSNSFSSDLERCFSVLPPS 181
Query: 237 --RQTLLFSATMTSDLQTLLEL---SANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVK 288
RQTLLF+AT+T ++ L E + F + V TL+ +Y+F+P VK
Sbjct: 182 DKRQTLLFTATVTDSVKALKEKPRPTGKLPVFMHEVDTVDKVAIPSTLQIEYVFVPSYVK 241
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL H + + +A++FV+ + +L L +LD +LHS QS+R ++LH
Sbjct: 242 EAYL-HSILLLPKYKESTAVVFVNRTVTAEVLRRALRKLDFRVASLHSEMPQSERTNSLH 300
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RFK+ A IL+ATDVASRGLDIPTV+LV+N+DIP P D++HRVGRTARAGR G A+S +
Sbjct: 301 RFKADAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISII 360
Query: 409 TQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKE 466
+ D++ I IE + K++E E + +V+ D ++ + A+R + ++ +GF EK K
Sbjct: 361 GEKDIERIQSIEERINKKMELLEEINDDKVIKDSLSAMTTAKRESLSEMDKEGFGEKRKI 420
Query: 467 RKKQ 470
K++
Sbjct: 421 NKRK 424
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 267/429 (62%), Gaps = 6/429 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
DS TF+ L L +Q CK L +PTP+Q+ IP L+G D++GLAQTGSGKTAAFA+
Sbjct: 77 DSFETFSQLNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAI 136
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM
Sbjct: 137 PILNRLWHDQEPYYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLM 196
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-K 235
+PH++IATPGR+ LE + KFLV+DEADR+LD+ F L + + +P +
Sbjct: 197 RKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQ 254
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R T LFSATMTS + L S ++TV+TL Q + +P +K+ YL+++
Sbjct: 255 ERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLVYL 314
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL FK+G+
Sbjct: 315 LN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKR 371
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++L
Sbjct: 372 AILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 431
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKML 475
I IE V+GK+L + + +L+ V KA M++ E+ A+ + ++ M
Sbjct: 432 ILRIEEVLGKKLPKENVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMT 491
Query: 476 AEKGSLKKR 484
E + +R
Sbjct: 492 RENMDMGER 500
>gi|367014487|ref|XP_003681743.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
gi|359749404|emb|CCE92532.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
Length = 501
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/405 (44%), Positives = 257/405 (63%), Gaps = 6/405 (1%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+ +T + +F+GL + +Q CK L +PTP+Q IP LEGKD++GLAQTGSGKT
Sbjct: 73 DDSTEKTLESFSGLNIVPELLQACKNLNFTKPTPIQAKAIPPALEGKDIIGLAQTGSGKT 132
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AAFALPIL+RL D A +++PTRELA Q+ E F +LG+ + R +VGGM+++ Q
Sbjct: 133 AAFALPILNRLWHDQSPYYACILSPTRELAQQIKETFDSLGTIMGARTTCIVGGMNMMDQ 192
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
A+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L + +
Sbjct: 193 ARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRILK 250
Query: 232 CLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
+P + R T LFSATMTS + L S ++TV+TL Q + +P +K+
Sbjct: 251 IIPTQGRTTYLFSATMTSKIDKLQRASLTDPVKCAVSNKYQTVDTLVQTLMVVPGGLKNT 310
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+L+++L+ E +G ++ IIF T + +S L L+ A ALH +Q+QR AL F
Sbjct: 311 FLIYLLN--EFIG-KTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLF 367
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q
Sbjct: 368 KAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
D++LI IE V+GK+L + V+S V KA M+L
Sbjct: 428 YDLELILRIEEVLGKKLPKENVDRDLVMSLRNSVDKANGEVIMEL 472
>gi|242784404|ref|XP_002480380.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
ATCC 10500]
gi|218720527|gb|EED19946.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
ATCC 10500]
Length = 538
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 200/487 (41%), Positives = 286/487 (58%), Gaps = 43/487 (8%)
Query: 11 FPLFAKPKSK---TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGL 67
P ++ K K T S PQ E S++A+ L+ TDST FA L +
Sbjct: 68 LPTLSRIKKKSNVTSSSNIPQIEEPVSSRDARDIGLQ----------VTDST--FANLNV 115
Query: 68 AEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY 127
A W V++ + +RRPT +Q CIP+IL+GKD +G ++TGSGKT AFA+PIL + AEDP+
Sbjct: 116 APWLVKSLSTMAIRRPTAIQKSCIPEILQGKDCIGGSRTGSGKTIAFAVPILQKWAEDPF 175
Query: 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPG 187
G+ A+V+TPTRELA Q+ EQFKA+ + L+ ++ GG D+ QA +L RPHV+IATPG
Sbjct: 176 GIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQRPHVIIATPG 235
Query: 188 RIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCL-----PKNRQTLL 241
R+ + + V +R + +V+DEADR+L G L V CL RQTLL
Sbjct: 236 RLADHIRTSGEDTIVGLNRVRMIVMDEADRLLTSGHGSMLPDVETCLSALPPSSERQTLL 295
Query: 242 FSATMTSDLQTLLEL--SANKAYFYEAYEGFKTVE----TLKQQYIFIPKNVKDVYLMHV 295
F+AT+T +++ L + AN+ + G + + TLKQ Y+ +P ++ +L HV
Sbjct: 296 FTATVTPEVRALKSVPRPANRPPIHVTEIGTENIAPIPPTLKQTYLQVPMTHREAFL-HV 354
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L E + AIIF + ++ LL +L L +LHS QS+R + L RF++ A
Sbjct: 355 LLSTEGNSSKPAIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERTANLSRFRASAA 414
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVASRGLDIP V LV+N+D+PR P DYVHRVGRTARAGR G +V+ V Q DV L
Sbjct: 415 RLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESVTLVGQRDVQL 474
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE--------- 466
+ IE VG+Q+ ++ E+E +S +RV K +K + + + A+E
Sbjct: 475 VLAIEKRVGRQMVQW---EEEGVSVESRVVKG---GVLKEVGEAKRDAAREIDEGRDILG 528
Query: 467 RKKQKLK 473
R+ KLK
Sbjct: 529 RRTNKLK 535
>gi|365760375|gb|EHN02100.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 503
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 184/439 (41%), Positives = 271/439 (61%), Gaps = 6/439 (1%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
T + N+ +S +F L L +Q CK L +PTP+Q+ IP L+G D++GLAQT
Sbjct: 70 TAENDNANEGESFESFNELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQT 129
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM
Sbjct: 130 GSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGM 189
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
+++ QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L
Sbjct: 190 NMMDQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVL 247
Query: 227 RVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285
+ + +P + R T LFSATMTS + L S ++TV+TL Q + +P
Sbjct: 248 DRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQALMVVPG 307
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
+K+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+
Sbjct: 308 GLKNTYLIYLLN--ESIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMG 364
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
AL FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++
Sbjct: 365 ALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSI 424
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAK 465
S V+Q D++LI IE V+G++L + + +L+ V KA M++ E+ A+
Sbjct: 425 SLVSQYDLELILRIEEVLGRKLPKENVDKSIILTLRDSVDKANGEVVMEMNRRNKEKIAR 484
Query: 466 ERKKQKLKMLAEKGSLKKR 484
+ ++ M E + +R
Sbjct: 485 GKGRRGRMMTRENMDMGER 503
>gi|161784286|sp|Q5ACU6.2|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 539
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 176/380 (46%), Positives = 245/380 (64%), Gaps = 9/380 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L +++ + + +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL
Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A+ PY ALV+ PTREL +Q+ + F ALGS + LR +VGGMD++ QA+ LM +
Sbjct: 184 SLWHAQQPY--FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 241
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHV++ATPGRI LE K+LV+DEADR+LD+ F L + + +P R
Sbjct: 242 PHVIVATPGRIMDHLEHTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRT 299
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ ++ L S + ++T + L Q + + K+ L+H+L+
Sbjct: 300 TYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLN- 358
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E MG +S I+F T +LL L AV LH SQSQRL +L++FKS QA IL
Sbjct: 359 -EFMG-KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANIL 416
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S +TQ D+++
Sbjct: 417 VATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 476
Query: 419 IEAVVGKQLEEFECKEQEVL 438
IE+V+GK+L + + +EVL
Sbjct: 477 IESVLGKKLPKEDKPPKEVL 496
>gi|255719254|ref|XP_002555907.1| KLTH0H00638p [Lachancea thermotolerans]
gi|238941873|emb|CAR30045.1| KLTH0H00638p [Lachancea thermotolerans CBS 6340]
Length = 433
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 177/415 (42%), Positives = 257/415 (61%), Gaps = 12/415 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LG+++W V+ + + + +PT +Q CIP+IL+GKD +G A+TGSGKT AF P+L +
Sbjct: 5 FATLGISKWLVEALQAMKITQPTAIQKACIPQILQGKDCIGGAKTGSGKTIAFGAPMLTK 64
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA +L +PH
Sbjct: 65 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVALVVGGESIVDQAINLQRKPHF 124
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
++ATPGR+ ++ D R KFLVLDEAD +L F E L LP + RQ
Sbjct: 125 IVATPGRMAHHIMNSGEDTIGGLKRAKFLVLDEADILLTDTFSEHLATCISILPPKEKRQ 184
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T ++ L A + +Y E+ + TLK Y+ +P+ VK+ YL
Sbjct: 185 TLLFTATVTDQVKALQNAPAAEGKPPLFSYEVESMDKVAIPSTLKTTYLLVPEQVKEAYL 244
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ SAIIFV+ + +L L++LD +LHS Q +R ++LHRF++
Sbjct: 245 YQILTN-ATYNESSAIIFVNRTVTAEILRRTLKQLDVRVASLHSQMPQQERTNSLHRFRA 303
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A +L+ATDVASRGLDIPTV LV+NYDI P ++HR GRTARAGR G ++ FV D
Sbjct: 304 NAARVLIATDVASRGLDIPTVQLVINYDISSNPDTFIHRAGRTARAGRSGESICFVAPRD 363
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAK 465
V I IE + K++EEF + + V+ + +V A+R + M + + F E+ K
Sbjct: 364 VSRIEAIEERINKKMEEFKDVHDTAVIRKALNKVTVAKRESLMSMEKENFGERRK 418
>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661162|sp|Q6FNK8.1|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
Length = 493
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 185/418 (44%), Positives = 263/418 (62%), Gaps = 7/418 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA L L +Q C+ L +PTP+Q IP L G DV+GLAQTGSGKTAAFA+PIL+
Sbjct: 74 SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILN 133
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L ED A V+ PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM +PH
Sbjct: 134 KLWEDQQPYYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 193
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE KFLV+DEADR+LD+ F L + + +P K R T
Sbjct: 194 IIIATPGRLMDHLENTKGFS--LKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTT 251
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q + +P +K+ +L+++L+
Sbjct: 252 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN-- 309
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G ++ IIF T + LS L L+ A ALH +Q+QR AL FK+G+ +IL+
Sbjct: 310 EFIG-KTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 368
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI I
Sbjct: 369 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 428
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
E V+GK+L + + +L+ V KA M+ M+ +EK K ++ +M+A+
Sbjct: 429 EEVLGKKLPKESVDKNIILTLRDSVDKANGEVVME-MNRRNKEKQARGKGRRGRMMAK 485
>gi|67624705|ref|XP_668635.1| DEAD box protein [Cryptosporidium hominis TU502]
gi|54659844|gb|EAL38406.1| DEAD box protein [Cryptosporidium hominis]
Length = 441
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 248/399 (62%), Gaps = 6/399 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTFA LG+ + C+ LG + PT +Q IP LEG+D++GLA+TGSGKT +F +PIL
Sbjct: 28 VTFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPIL 87
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
RL +D + A+++ PTREL Q++EQF A GS + L+ +VGG+D++ Q+ SL +P
Sbjct: 88 QRLLDDQVPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKKP 147
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+++A+PGR+ LE KFLV+DEADR+L + FE L + + PKNR T
Sbjct: 148 HIIVASPGRLVDHLENTKGFN--IGGIKFLVMDEADRLLSMDFEIALNKIVESSPKNRTT 205
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT+ + L ++S + + T L Q Y+FIP K Y + +L
Sbjct: 206 YLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGLL--- 262
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+++G + IIF +TC +C LL +EL +++LH SQSQRLSAL+ FK Q +L
Sbjct: 263 QNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLF 322
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
T+V SRGLDIP VD V+N+DIP +DYVHRVGRTARAGR G A+S VTQ DV+ I
Sbjct: 323 TTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQRI 382
Query: 420 EAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMD 457
E + K+L+E+ + +E ++ +V + R +L D
Sbjct: 383 EFALNKKLDEYTSLQREEAMAIHAKVVDSLRTVDAELND 421
>gi|302822183|ref|XP_002992751.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
gi|300139492|gb|EFJ06232.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
Length = 733
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/417 (43%), Positives = 255/417 (61%), Gaps = 16/417 (3%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
T + +F LG+ E V C +LG + PTP+Q +P L+G+D++GLAQTGSGKTA
Sbjct: 167 GTAAAAVPSFGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTA 226
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AFALPIL L + + A V++PTRELA Q++EQF+ALGS + +R +VGG+ ++ QA
Sbjct: 227 AFALPILQALFQQCHPFFACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQA 286
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
+L PH+V+ATPGR+ L K+LVLDEAD++L FE+E+ + +
Sbjct: 287 VALGKNPHIVVATPGRLLDHLTNTKGFS--LRNVKYLVLDEADKILHNDFEKEVDEILKV 344
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
+P+ R+T LFSATMT+ + L E + T TLKQ+Y+F+P KD Y
Sbjct: 345 VPRERKTFLFSATMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYF 404
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+ +L++M +A++F TC S L+L+L L A+ + SQS+R AL +FK+
Sbjct: 405 VFLLNEMAG---STAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKA 461
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G +L+ TDVASRGLDIP+VD+ DY+HRVGRTARAGR G A+S VTQ D
Sbjct: 462 GDRNLLICTDVASRGLDIPSVDV-----------DYIHRVGRTARAGRSGRAISIVTQYD 510
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
VDL IE ++G L EF K EVL RV +A+R+A M + + +K+K+R+
Sbjct: 511 VDLYKRIEDLIGMTLPEFPAKADEVLLLEERVSEAQRLAAMHIREKDASKKSKKRRN 567
>gi|367001072|ref|XP_003685271.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
gi|357523569|emb|CCE62837.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 187/444 (42%), Positives = 272/444 (61%), Gaps = 9/444 (2%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDSTVT-FAGLGLAEWAVQTCKELGMRRPTPVQT 88
E + E+ N K + T D T++ T T F L L +Q C L +PTP+Q+
Sbjct: 46 ESDEETGNTKRQVIR--TEADIEENTSEKTFTSFNELDLVPELIQACHNLNFSKPTPIQS 103
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
IP LEG D++GLAQTGSGKTAAFA+PIL++L ED A ++ PTRELA Q+ E F
Sbjct: 104 KSIPPALEGHDIIGLAQTGSGKTAAFAIPILNKLWEDQQPYYACILAPTRELAQQIKETF 163
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+LGS + +R +VGGM+++ Q++ LM +PH++IATPGR+ LE + KF
Sbjct: 164 DSLGSLMGVRSVCIVGGMNMMDQSRELMRKPHIIIATPGRLMDHLENTKGFS--LRKLKF 221
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267
LV+DEADR+LD+ F L + + +P ++R T LFSATMTS ++ L S
Sbjct: 222 LVMDEADRLLDMEFGPVLDRILKIIPTQDRTTYLFSATMTSKIEKLQRASLTNPVKCAVS 281
Query: 268 EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL 327
++TVETL Q + +P +K+ YL+++L+ E +G +S I+F T + LS L L
Sbjct: 282 NKYQTVETLVQTLMVVPGGLKNTYLIYLLN--EFIG-KSIIVFTRTKANAERLSALSNLL 338
Query: 328 DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387
+ + ALH +Q+QR AL FK+G+ IL+A DVA+RGLDIP+VD+V+NYDIP +
Sbjct: 339 EFSSTALHGDLNQNQRTGALDLFKAGKRQILVAIDVAARGLDIPSVDIVINYDIPVDSKS 398
Query: 388 YVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKA 447
Y+HRVGRTARAGR G ++S V+Q D++LI IE V+GK+L + + ++ V KA
Sbjct: 399 YIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKNTIMMFRDSVDKA 458
Query: 448 RRVATMKLMDDGFEEKAKERKKQK 471
M++ E++A+ + QK
Sbjct: 459 NGEVVMEMNRRNKEKQARGKGTQK 482
>gi|150863861|ref|XP_001382482.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
processing [Scheffersomyces stipitis CBS 6054]
gi|158514820|sp|A3LP87.2|DBP8_PICST RecName: Full=ATP-dependent RNA helicase DBP8
gi|149385117|gb|ABN64453.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
processing [Scheffersomyces stipitis CBS 6054]
Length = 445
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 264/426 (61%), Gaps = 13/426 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG++ W + + + PT +Q+ CIPKIL G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDP+G+ LV+TPTRELA Q+AEQF ALG+ ++++ VVVGG D + Q L +P
Sbjct: 61 TQWSEDPFGIFGLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFVKQTLELQKKP 120
Query: 180 HVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KN 236
H VIATPGR+ +L + R K+LVLDEADR+L F +L F LP +
Sbjct: 121 HFVIATPGRLADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLPPSEK 180
Query: 237 RQTLLFSATMTSDLQTLLE---LSANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQT LF+AT+T ++ L E F E V TL +Y+F+P VK+
Sbjct: 181 RQTCLFTATVTDAVRALKEKPPAQGKPPVFLHEVETVDQVAIPSTLSIKYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L ++ +A+IFV+ + +L L +L+ +LHS QS+R +++ RF
Sbjct: 241 YLNSIL-RLPQYEKSTAVIFVNRTTTAEVLRRTLRKLEFRVASLHSEMPQSERTNSVQRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIP+V+LV+N+DIP P D++HRVGRTARAGR G AV+ + +
Sbjct: 300 KAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAE 359
Query: 411 NDVDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAK-ER 467
D+D I IE + K++E E + V++D +T A+R + M++ + F EK K R
Sbjct: 360 KDIDRIASIEERINKKMELLEEVTDDSVITDSLTATSVAKRESLMEMDKENFGEKRKINR 419
Query: 468 KKQKLK 473
KK+ L+
Sbjct: 420 KKRGLE 425
>gi|223947385|gb|ACN27776.1| unknown [Zea mays]
gi|413934955|gb|AFW69506.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 430
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/409 (44%), Positives = 249/409 (60%), Gaps = 39/409 (9%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL- 119
TFA LG+ V+ C +G + PT +Q IP L+GKD++ LAQTGSGKT AFALPIL
Sbjct: 25 TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84
Query: 120 ----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+R AE + A V++PTRELA Q+AEQF+ALGS + LRC V+VGG+D + Q S+
Sbjct: 85 ELLSNRQAEQSF--FACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSI 142
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPH+V VLDEAD++L+V FE+ L + +PK
Sbjct: 143 GKRPHIV---------------------------VLDEADKLLNVEFEKSLDDILSEMPK 175
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+R+T LFSATMT + L E + TV++LKQ++ F+P + KD YL+HV
Sbjct: 176 DRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV 235
Query: 296 LS-KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ ++E M +IFV TC S LL+L+L L +A+++ SQ +RL AL+RFK+
Sbjct: 236 LNERLESM----IMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKD 291
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAGR G AVS V Q +
Sbjct: 292 CNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQ 351
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++GK++++ + EVL + A+R+A KL D G +K
Sbjct: 352 WFVLIEQLLGKKIDQCKVDRDEVLILKGPISDAKRIALTKLKDSGGHKK 400
>gi|66357446|ref|XP_625901.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
[Cryptosporidium parvum Iowa II]
gi|46226956|gb|EAK87922.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
[Cryptosporidium parvum Iowa II]
Length = 446
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/399 (43%), Positives = 249/399 (62%), Gaps = 6/399 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTFA LG+ + C+ LG + PT +Q IP LEG+D++GLA+TGSGKT +F +PIL
Sbjct: 33 VTFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPIL 92
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
RL +D + A+++ PTREL Q++EQF A GS + L+ +VGG+D++ Q+ SL +P
Sbjct: 93 QRLLDDQVPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKKP 152
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+++A+PGR+ LE KFLV+DEADR+L + FE L + + P+NR T
Sbjct: 153 HIIVASPGRLVDHLENTKGFN--IGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTT 210
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT+ + L ++S + + T L Q Y+FIP K Y + +L
Sbjct: 211 YLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGML--- 267
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+++G + IIF +TC +C LL +EL +++LH SQSQRLSAL+ FK Q +L
Sbjct: 268 QNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLF 327
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
T+V SRGLDIP VD V+N+DIP +DYVHRVGRTARAGR G A+S VTQ DV+ I
Sbjct: 328 TTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQRI 387
Query: 420 EAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMD 457
E + ++L+E+ + +EV++ +V + R +L D
Sbjct: 388 EFALNRKLDEYTSLQREEVMAIHAKVVDSLRTVDAELND 426
>gi|323508819|dbj|BAJ77303.1| cgd4_3180 [Cryptosporidium parvum]
gi|323510507|dbj|BAJ78147.1| cgd4_3180 [Cryptosporidium parvum]
Length = 441
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/399 (43%), Positives = 249/399 (62%), Gaps = 6/399 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTFA LG+ + C+ LG + PT +Q IP LEG+D++GLA+TGSGKT +F +PIL
Sbjct: 28 VTFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPIL 87
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
RL +D + A+++ PTREL Q++EQF A GS + L+ +VGG+D++ Q+ SL +P
Sbjct: 88 QRLLDDQVPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKKP 147
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+++A+PGR+ LE KFLV+DEADR+L + FE L + + P+NR T
Sbjct: 148 HIIVASPGRLVDHLENTKGFN--IGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTT 205
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT+ + L ++S + + T L Q Y+FIP K Y + +L
Sbjct: 206 YLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGML--- 262
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+++G + IIF +TC +C LL +EL +++LH SQSQRLSAL+ FK Q +L
Sbjct: 263 QNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLF 322
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
T+V SRGLDIP VD V+N+DIP +DYVHRVGRTARAGR G A+S VTQ DV+ I
Sbjct: 323 TTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQRI 382
Query: 420 EAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMD 457
E + ++L+E+ + +EV++ +V + R +L D
Sbjct: 383 EFALNRKLDEYTSLQREEVMAIHAKVVDSLRTVDAELND 421
>gi|296824810|ref|XP_002850715.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
gi|238838269|gb|EEQ27931.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
Length = 527
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/427 (42%), Positives = 266/427 (62%), Gaps = 15/427 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LGLA W V + K + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA PILH
Sbjct: 99 SFASLGLAPWLVSSLKAMEIKRPTAIQKCCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 158
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+G+ A+V+TPTRELA Q+ EQ KA+ + L+ ++ GG D+ QA L RPH
Sbjct: 159 KWSEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPLLITGGSDMRPQAIGLSQRPH 218
Query: 181 VVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK---- 235
+VIATPGR+ ++ + V R + +VLDEADR+L G L V CL
Sbjct: 219 IVIATPGRLADHIKSSGEDTIVGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSALPPS 278
Query: 236 -NRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVETLKQQYIFIPKNVKD 289
NRQTLLF+AT+T +++ L + + N+ + + E TLKQ Y+ +P N ++
Sbjct: 279 TNRQTLLFTATVTPEVRALKSMPRAKNRPPIFVTEISTENTTIPPTLKQSYLQVPLNHRE 338
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
+L HVL E +S IIF + ++ LL +L L +LHS QS+R++ L R
Sbjct: 339 AFL-HVLLSTEGNSSKSTIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERVANLSR 397
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
F++ A +L+ATDVA+RGLDIP+V LV+N+D+PR P DY+HRVGRTARAGR G A++ V
Sbjct: 398 FRASAARLLVATDVAARGLDIPSVGLVINFDVPRNPDDYIHRVGRTARAGREGEAITLVG 457
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE--- 466
Q DV L+ IEA VGKQ+ +E + S I + + V + K G ++ ++
Sbjct: 458 QRDVQLVLAIEARVGKQMVAWEEPGVNLESRIVKSTVLKEVGSTKREAMGEIDEGRDILG 517
Query: 467 RKKQKLK 473
R+ +KLK
Sbjct: 518 RRVRKLK 524
>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 441
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/416 (43%), Positives = 265/416 (63%), Gaps = 7/416 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TFA LG+ +Q +EL PT +QT CIP+ + G+D++G+A TGSGKT AF +PI
Sbjct: 3 TKTFAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPI 62
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD-LLTQAKSLMN 177
LHRL ++P G A V++PTRELAYQ++ QF+ALG+ + ++ V+VGG D + QA L
Sbjct: 63 LHRLWDNPQGYFACVLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQAVRLAQ 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+PH+++ATPGR+ L+ K LVLDEADR+LD+ F+ E+ + Q +PK R
Sbjct: 123 KPHIIVATPGRLHDHLKSTKGFS--LRSLKHLVLDEADRLLDLDFQREITEIMQSIPKER 180
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
T LFSATMT+++ L S + +A + TV TL Q Y+ P K+V L++++
Sbjct: 181 CTYLFSATMTANVSKLQRASLSDPVRVDASLFRYTTVSTLVQHYLLCPLVEKEVTLVYLI 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ + I I+FV T LS++L L +AV LH +QSQRL A RFKSG++
Sbjct: 241 NSLVQNLI---IVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFKSGKSK 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVASRGLD+P VD+V+NYD P + +DY+HRVGRTARAGR G ++ VTQ D +L+
Sbjct: 298 ILVATDVASRGLDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQYDAELM 357
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+E V+ ++L+ + QE+ RV +A R+A +L ++ ++++ KL
Sbjct: 358 LRLEKVLNQKLDLYPTDLQEIALLKERVVEAGRLARNQLNEESKARGGGKKRRYKL 413
>gi|324513918|gb|ADY45697.1| ATP-dependent RNA helicase [Ascaris suum]
Length = 435
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/354 (49%), Positives = 241/354 (68%), Gaps = 7/354 (1%)
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKTAAFALPIL L + P + AL++TPTRELA+Q+AEQF ALG+ + L V+VGG+
Sbjct: 37 GSGKTAAFALPILQALLDTPQKLFALILTPTRELAFQIAEQFDALGASIGLLVAVIVGGV 96
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D++TQA +L RPHV++ATPGR+ LE KFLV+DEADR+L++ FE EL
Sbjct: 97 DMVTQALALAKRPHVIVATPGRLVDHLENTKGFN--LRALKFLVMDEADRILNMDFEVEL 154
Query: 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286
+ + LPK R+T L+SATMT + L S E +KTV+ LKQ YIFIP+
Sbjct: 155 DKILKVLPKERRTYLYSATMTKKVAKLERASLRDPARVEVCSKYKTVDKLKQHYIFIPQK 214
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
K+ YL+++L++M ++AI+F +TC S +L+L +L AV LH SQ++RL +
Sbjct: 215 YKEAYLVYILNEMAG---QTAIVFCATCASTMKTALMLRQLGFGAVPLHGQMSQAKRLGS 271
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L++FKS IL+ TDVASRGLDIP VD VLNYD+P +DYVHRVGRTARAGR G++++
Sbjct: 272 LNKFKSKVRPILVCTDVASRGLDIPNVDAVLNYDVPSQSKDYVHRVGRTARAGRSGVSIT 331
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL--MDD 458
FVTQ DV++ IE ++GK+L +E E +V+ + RV +A + A +L MD+
Sbjct: 332 FVTQYDVEVYQRIEHLIGKKLPLYETVENDVMLLVERVEEAMKAAKQELKEMDE 385
>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 499
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 245/380 (64%), Gaps = 9/380 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L +++ + + +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL
Sbjct: 87 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 146
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A+ PY ALV+ PTRELA+Q+ + F ALGS + LR +VGGMD++ QA+ LM +
Sbjct: 147 SLWHAQQPY--FALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 204
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGRI LE K+LV+DEADR+LD+ F L + + +P R
Sbjct: 205 PHIIVATPGRIMDHLEHTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRI 262
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ ++ L S + ++T + L Q + + K+ L+H+L+
Sbjct: 263 TYLFSATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIHLLN- 321
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E +G +S I+F T +LL L AV LH SQSQRL +L++FKS QA IL
Sbjct: 322 -EFIG-KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANIL 379
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S +TQ D+++
Sbjct: 380 VATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 439
Query: 419 IEAVVGKQLEEFECKEQEVL 438
IE V+GK+L + + +E+L
Sbjct: 440 IENVLGKKLPKEDKPPKEIL 459
>gi|149238864|ref|XP_001525308.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013494|sp|A5E0U9.1|DBP8_LODEL RecName: Full=ATP-dependent RNA helicase DBP8
gi|146450801|gb|EDK45057.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 444
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/423 (41%), Positives = 273/423 (64%), Gaps = 13/423 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+A+W ++ + + + PT +Q+ CIP+IL+G+D +G A+TGSGKT AFA +L
Sbjct: 4 SFKELGVAKWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFAALMLT 63
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ ++DP+G+ L++TPTRELA Q+AEQF ALG+ ++++ VVVGG D + Q L +PH
Sbjct: 64 QWSQDPFGIFGLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFVKQTLELQKKPH 123
Query: 181 VVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNR 237
VIATPGR+ +L + R K+LVLDEADR+L F +L+ F LP + R
Sbjct: 124 FVIATPGRLADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDLQRCFTILPPSEKR 183
Query: 238 QTLLFSATMTSDLQTLLELSANKA----YFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
QTLLF+AT+T ++ L + + + ++ G + +TL Y+F+P VK+
Sbjct: 184 QTLLFTATVTDAVKALKDKPRAEGKLPVFLHQVDAGVDQIAIPKTLSTMYVFVPSYVKEA 243
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L K+ +A++FV+ + +L +L +L+ + +LHS Q++R ++LHRF
Sbjct: 244 YLTSIL-KLPKYEESTAVVFVNRTMTAEVLRRMLRKLEFKVASLHSEMPQTERTNSLHRF 302
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIPTV+LV+N+DIP P D++HRVGRTARAGR G A+S + +
Sbjct: 303 KAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGE 362
Query: 411 NDVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERK 468
D++ I IE + K++E E + +V++D + + A+R A + + + F E+ K K
Sbjct: 363 KDIERIESIEERINKKMELLEGVDDDKVINDSLQKATTAKREAMLDMDKESFGERRKVNK 422
Query: 469 KQK 471
K++
Sbjct: 423 KKR 425
>gi|119491751|ref|XP_001263370.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
gi|134034081|sp|A1D6X9.1|DBP8_NEOFI RecName: Full=ATP-dependent RNA helicase dbp8
gi|119411530|gb|EAW21473.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
Length = 526
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 266/429 (62%), Gaps = 20/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA L +A W V + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AF++P+L
Sbjct: 97 SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 156
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP+G+ +V+TPTRELA Q+ EQ KA+ + ++ ++ GG D+ QA +L RPH
Sbjct: 157 KWAEDPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPH 216
Query: 181 VVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP----- 234
VVIATPGR+ ++ D R + +VLDEADR+L G L V CL
Sbjct: 217 VVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPS 276
Query: 235 KNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVE-TLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + SANK + + E ++ TLKQ Y+ +P +
Sbjct: 277 SERQTLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGSIPPTLKQTYLKVPLTHR 336
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL ED R AIIF + ++ LL +L L +LHS QS+R + L
Sbjct: 337 EAFL-HVLLSTEDNASRPAIIFCNHTKTADLLERMLRRLTHRVTSLHSLLPQSERNANLA 395
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A IL+ATDVASRGLDIPTV LV+NYD+PR P DYVHRVGRTARAGR G A++ V
Sbjct: 396 RFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAITLV 455
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR------VYKARRVATMKLMDDGFEE 462
Q DV L+ IE VG+Q+EE+ + + + R V +A+R A M +D+G +
Sbjct: 456 GQRDVQLVLAIEERVGRQMEEWSEEGVSIEGRLVRTGVLKEVGEAKREA-MGEIDEGRDV 514
Query: 463 KAKERKKQK 471
++R K K
Sbjct: 515 LGRKRNKLK 523
>gi|363750628|ref|XP_003645531.1| hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889165|gb|AET38714.1| Hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
Length = 486
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 186/451 (41%), Positives = 278/451 (61%), Gaps = 10/451 (2%)
Query: 39 KTTQLEKFTNPDP--NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILE 96
K Q + PD ++ TT++ +F L + ++ C+ L +PTP+Q+ IP L+
Sbjct: 43 KENQETSVSGPDEVLDNETTENFESFRDLDIVPELIEACENLKFTKPTPIQSKAIPPALQ 102
Query: 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156
G D++GLAQTGSGKTAAFA+PIL++L D A ++ PTRELA Q+ E F +LGS +
Sbjct: 103 GNDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMG 162
Query: 157 LRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216
+R ++GGM+++ QA+ LM +PH++IATPGR+ LE + +FLV+DEADR
Sbjct: 163 VRSTCIMGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLRFLVIDEADR 220
Query: 217 VLDVGFEEELRVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVET 275
+LD+ F L + + +P K R T LFSATMTS + L S ++TV+T
Sbjct: 221 LLDMEFGAVLDRILKNIPTKGRTTYLFSATMTSKIDKLQRASLTNPVKCSVSNKYQTVDT 280
Query: 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALH 335
L Q + +P +K+ YL+++L+ E +G +S I+F T + +S L L+ A ALH
Sbjct: 281 LIQTLMVVPGGLKNTYLIYLLN--EFIG-KSTIVFTRTKANAERISGLCNLLEFSATALH 337
Query: 336 SFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRT 395
+Q+QR AL FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRT
Sbjct: 338 GDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRT 397
Query: 396 ARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
ARAGR G ++S V+Q D++LI IE V+GK+L + + + +LS V KA M+L
Sbjct: 398 ARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKEDINKNMILSLRDSVDKANGEVVMEL 457
Query: 456 MDDGFEEKAKERKKQKLKMLAEKGSLKKRSE 486
E++A R K + +A K ++ K +
Sbjct: 458 NRRNKEKQA--RGKGRRGRMASKENMDKEEQ 486
>gi|326470936|gb|EGD94945.1| ATP-dependent RNA helicase DBP8 [Trichophyton tonsurans CBS 112818]
gi|326478499|gb|EGE02509.1| ATP-dependent RNA helicase DBP8 [Trichophyton equinum CBS 127.97]
Length = 528
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 184/429 (42%), Positives = 267/429 (62%), Gaps = 19/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LGLA W V + K + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA PILH
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+G+ A+++TPTRELA Q+ EQ KA+ + L+ ++ GG D+ QA L RPH
Sbjct: 160 KWSEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPH 219
Query: 181 VVIATPGRIKVLLE---EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL---- 233
+VIATPGR+ ++ ED I R + +VLDEADR+L G L V CL
Sbjct: 220 IVIATPGRLADHIKSSGEDTIIG--LRRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277
Query: 234 -PKNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVETLKQQYIFIPKNV 287
+RQTLLF+AT+T +++ L + + NK + + E TLKQ Y+ +P N
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
++ +L HVL E +S IIF + ++ LL +L L +LHS QS+R++ L
Sbjct: 338 REAFL-HVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANL 396
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
RF++ A +L+ATDVA+RGLDIP+V LV+NYD+PR P DY+HRVGRTARAGR G A++
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE- 466
V Q DV L+ IEA VGKQ+ +E + S I + + V + K G ++ ++
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516
Query: 467 --RKKQKLK 473
R+ +KLK
Sbjct: 517 LGRRVRKLK 525
>gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703981|gb|EMD44318.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba histolytica
KU27]
Length = 432
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 171/407 (42%), Positives = 255/407 (62%), Gaps = 8/407 (1%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
TT TF LGL ++ + LG ++PT +Q + IP L+ KD++G+AQTGSGKTA+
Sbjct: 3 NTTPKQKTFKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTAS 62
Query: 114 FALPILHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLL 169
F LP++ L E G ++I PTRELA Q+ E +G L L ++VGGMD++
Sbjct: 63 FLLPMVQHLLNVKEKNRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVM 122
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q+ L RP V++ TPGRI ++ + + KFLV+DEAD++L++ F E+ +
Sbjct: 123 KQSVQLAKRPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYL 182
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ LPK R T+LFSATM++ ++ L S + E + ++TV+TL+Q+Y FIP +
Sbjct: 183 IEKLPKQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYR 242
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+ +L + E ++ IIF C C L ++L ++ A+ LH SQ +RL AL
Sbjct: 243 DGYLISILKETEG---KTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALE 299
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FKSG+ IL+ATDVASRGLDIP VD+V+NYD P P+DYVHRVGRTARAG+ G A++ V
Sbjct: 300 KFKSGKRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYVHRVGRTARAGKSGYAITLV 359
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
TQ ++L IE ++ K+L E++ E+E ++ + +A RV + +L
Sbjct: 360 TQYSIELYQRIETMIEKKLNEYKVNEKEAIAYSQKANEAMRVVSQQL 406
>gi|304671|gb|AAA16339.1| DEAD-box protein [Drosophila melanogaster]
gi|313850|emb|CAA80804.1| DEAD-box protein [Drosophila melanogaster]
Length = 527
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 177/417 (42%), Positives = 264/417 (63%), Gaps = 7/417 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL R
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEAD +L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADPMLNGDFDESLSIIERCLPKTRQNLF 186
Query: 242 FSATMTSDLQ--TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
FSATM ++ ++ ++++ + EA +TVETL Y+ D+ L+ L K
Sbjct: 187 FSATMKDFIKESSIFPIASDCFEWCEA-SAVRTVETLDHGYLVSADYDPDMVLIEALRKY 245
Query: 300 -EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E+ + +IF +T + C LLS+ L+ ++ + V LH F Q +R++AL RFKS Q L
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIH 417
+ATDVA+RGLDIP+V+LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 306 IATDVAARGLDIPSVELVMNHILPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 366 AIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNCFDERAQNYRRKTWIM 422
>gi|146414784|ref|XP_001483362.1| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
6260]
Length = 433
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 182/423 (43%), Positives = 264/423 (62%), Gaps = 16/423 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+++W ++ + +R PT +Q CIP+IL G+D +G A+TGSGKT AFA P++ +
Sbjct: 3 FKDLGVSKWLLEALAAMKIRLPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTK 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP+G+ LV+TPTRELA Q+AEQF ALG+ ++++ VVVGG D++ QA + PH
Sbjct: 63 WSEDPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHF 122
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ +L D R KFLVLDEADR+L F +L F+ LP RQ
Sbjct: 123 IIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPDASKRQ 182
Query: 239 TLLFSATMTSDLQTLLEL---SANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T ++ L + K F V TL Y+F+P VK+ YL
Sbjct: 183 TLLFTATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYVKEAYL 242
Query: 293 MH--VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL K E AI+FV+ + +L L +LD +LHS QS+R ++LHRF
Sbjct: 243 HNILVLPKYEKA---LAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
++G A +L+ATDVASRGLDIP V+LV+N DIP P DY+HRVGRTARAG+ G +VS V++
Sbjct: 300 RAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSE 359
Query: 411 NDVDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERK 468
DV+ I IE + K+++ E + +++ + ++ V A+R + + +GF EK K K
Sbjct: 360 KDVERILAIENHINKKMDLLEEVNDDKIIKESLSIVTAAKRESVADMEKEGFGEKRKINK 419
Query: 469 KQK 471
+++
Sbjct: 420 RKR 422
>gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
SAW760]
Length = 432
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 252/406 (62%), Gaps = 8/406 (1%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T TF LGL ++ + LG ++PT +Q + IP L+ KD++G+AQTGSGKTA+F
Sbjct: 4 TASKQKTFKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASF 63
Query: 115 ALPILHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLT 170
LP++ L E ++I PTRELA Q+ E +G L L ++VGGMD++
Sbjct: 64 LLPMIQHLLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMK 123
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q+ L RPHV++ TPGRI ++ + + KFLV+DEAD++L++ F E+ +
Sbjct: 124 QSVQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLI 183
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ LP R T+LFSATM++ ++ L S + E + ++TV+TL+Q+Y FIP +D
Sbjct: 184 EKLPSQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRD 243
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL+ +L + E +S IIF C C L ++L +L A+ LH SQ +RL AL +
Sbjct: 244 GYLLSILKETEG---KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEK 300
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FKSG+ IL+ATDVASRGLDIP VD+V+NYD P P+DY+HRVGRTARAG+ G A++ VT
Sbjct: 301 FKSGKRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVT 360
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
Q ++L IE ++ K+L E++ E+E ++ + A R+ + +L
Sbjct: 361 QYSIELYQRIETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406
>gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
SAW760]
Length = 432
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 252/406 (62%), Gaps = 8/406 (1%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T TF LGL ++ + LG ++PT +Q + IP L+ KD++G+AQTGSGKTA+F
Sbjct: 4 TASKQKTFKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASF 63
Query: 115 ALPILHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLT 170
LP++ L E ++I PTRELA Q+ E +G L L ++VGGMD++
Sbjct: 64 LLPMIQHLLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMK 123
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q+ L RPHV++ TPGRI ++ + + KFLV+DEAD++L++ F E+ +
Sbjct: 124 QSIQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLI 183
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ LP R T+LFSATM++ ++ L S + E + ++TV+TL+Q+Y FIP +D
Sbjct: 184 EKLPSQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRD 243
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL+ +L + E +S IIF C C L ++L +L A+ LH SQ +RL AL +
Sbjct: 244 GYLLSILKETEG---KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEK 300
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FKSG+ IL+ATDVASRGLDIP VD+V+NYD P P+DY+HRVGRTARAG+ G A++ VT
Sbjct: 301 FKSGKRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVT 360
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
Q ++L IE ++ K+L E++ E+E ++ + A R+ + +L
Sbjct: 361 QYSIELYQRIETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406
>gi|302508367|ref|XP_003016144.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
112371]
gi|291179713|gb|EFE35499.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
112371]
Length = 528
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 184/429 (42%), Positives = 267/429 (62%), Gaps = 19/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LGLA W V + K + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA PILH
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAGPILH 159
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+G+ A+++TPTRELA Q+ EQ KA+ + L+ ++ GG D+ QA L RPH
Sbjct: 160 KWSEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPH 219
Query: 181 VVIATPGRIKVLLE---EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL---- 233
+VIATPGR+ ++ ED I R + +VLDEADR+L G L V CL
Sbjct: 220 IVIATPGRLADHIKSSGEDTIIG--LKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277
Query: 234 -PKNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVETLKQQYIFIPKNV 287
+RQTLLF+AT+T +++ L + + NK + + E TLKQ Y+ +P N
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
++ +L HVL E +S IIF + ++ LL +L L +LHS QS+R++ L
Sbjct: 338 REAFL-HVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANL 396
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
RF++ A +L+ATDVA+RGLDIP+V LV+NYD+PR P DY+HRVGRTARAGR G A++
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE- 466
V Q DV L+ IEA VGKQ+ +E + S I + + V + K G ++ ++
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516
Query: 467 --RKKQKLK 473
R+ +KLK
Sbjct: 517 LGRRVRKLK 525
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 174/378 (46%), Positives = 246/378 (65%), Gaps = 6/378 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 113 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 172
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 173 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 232
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 233 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 290
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 291 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 350
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 351 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 407
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 408 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 467
Query: 409 TQNDVDLIHEIEAVVGKQ 426
+Q D++LI IE V+GK
Sbjct: 468 SQYDLELILRIEEVLGKN 485
>gi|323455700|gb|EGB11568.1| hypothetical protein AURANDRAFT_2416, partial [Aureococcus
anophagefferens]
Length = 435
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 181/389 (46%), Positives = 242/389 (62%), Gaps = 6/389 (1%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
LGL V ELG +PT +Q IP L G+DV+GLA+TGSGKT AF LPILH+L E
Sbjct: 1 LGLHAALVDAVGELGWAKPTRIQKAAIPVALSGRDVIGLAETGSGKTGAFGLPILHKLLE 60
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
P + + + PTRELA Q+ E F ALG+ + LRC VVGG+++ QA +L PHVV+A
Sbjct: 61 KPSRLFGVALAPTRELAVQIHEVFDALGAAIGLRCVCVVGGVEIAAQALALAKLPHVVVA 120
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQTLLFS 243
TPGR+ LE K LV+DEADR+L + FE+EL + +P+ R ++LFS
Sbjct: 121 TPGRLVDHLENTKGFS--LRTCKCLVMDEADRMLSMDFEKELDAIVGAIPREGRCSMLFS 178
Query: 244 ATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMG 303
ATMTS + L S K + F L Q+Y+F+P K+ YL VL
Sbjct: 179 ATMTSKVAKLQRASLYKPVKVAVNDKFAMPRQLDQRYLFVPAKHKECYLAAVLDARRGA- 237
Query: 304 IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363
+A++F +TC +LLL L +A LH +Q +RL ALH+FK+G ATIL+ATDV
Sbjct: 238 --TALVFCATCAGATRATLLLRNLGFDAACLHGQMAQPKRLGALHKFKAGAATILVATDV 295
Query: 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVV 423
A+RGLDIP VDLVLNYD+P + ++YVHRVGRTARAGR G A++FVTQ DV+L +E ++
Sbjct: 296 AARGLDIPAVDLVLNYDVPTHGKEYVHRVGRTARAGRKGSAIAFVTQYDVELYQRLEHLI 355
Query: 424 GKQLEEFECKEQEVLSDITRVYKARRVAT 452
G +L + + E L+ + RV A R+A
Sbjct: 356 GVKLPKADVDEDMALAFLDRVNDAARLAA 384
>gi|121705654|ref|XP_001271090.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
gi|134034080|sp|A1CKJ0.1|DBP8_ASPCL RecName: Full=ATP-dependent RNA helicase dbp8
gi|119399236|gb|EAW09664.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
Length = 523
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 262/428 (61%), Gaps = 16/428 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ L +A W V + L +R+PT +Q CIP+IL GKD +G ++TGSGKT AF++P+L
Sbjct: 94 SFSALNVAPWLVGSLTTLAVRKPTAIQKACIPEILNGKDCIGGSRTGSGKTIAFSVPMLQ 153
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP G+ L++TPTRELA Q+ EQ KA+ + ++ ++ GG D+ +QA +L RPH
Sbjct: 154 KWAEDPLGIFGLILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQALALAGRPH 213
Query: 181 VVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP----- 234
VV+ATPGR+ ++ D R + +VLDEADR+L G L V CL
Sbjct: 214 VVVATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSALPPS 273
Query: 235 KNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVE-TLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + +ANK + + E TV TLKQ Y+ +P +
Sbjct: 274 SERQTLLFTATVTPEVRALKNMPRAANKPPVFVTEISSESQGTVPPTLKQTYLKVPLTHR 333
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL E + AIIF + ++ LL +L L +LHS QS+R + L
Sbjct: 334 EAFL-HVLLSTEGNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLA 392
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A IL+ATDVASRGLDIP+V LV+NYD+PR P DYVHRVGRTARAGR G +V+ V
Sbjct: 393 RFRASAARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGRTARAGRSGESVTLV 452
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE-- 466
Q DV L+ IEA VG+Q+EE+ + + + R + V K G ++ ++
Sbjct: 453 GQRDVQLVLAIEARVGRQMEEWSEEGVSIEGRVVRTGVLKEVGEAKREASGEIDEGRDVL 512
Query: 467 -RKKQKLK 473
RK+ KLK
Sbjct: 513 GRKRNKLK 520
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 185/415 (44%), Positives = 264/415 (63%), Gaps = 12/415 (2%)
Query: 48 NPDPNSTTTDSTVT---FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLA 104
N D N T D +T F+ L L + + L PT +Q IP LEG+DV+GLA
Sbjct: 24 NDDDNQETEDGIITSKSFSSLNLHPSLLSSIASLQWTNPTQIQAASIPPALEGRDVIGLA 83
Query: 105 QTGSGKTAAFALPILHRLAEDPYG-VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVV 163
+TGSGKT +FA+PIL+ L E P V A+++ PTRELA+Q+ E ALG G+ VV
Sbjct: 84 ETGSGKTGSFAIPILNYLLEKPQKQVFAVILAPTRELAFQIHEVMVALGRGMGANSVCVV 143
Query: 164 GGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223
GG+D+ +QA +L PHVV+ATPGR+ L+ + K+LV+DEADR+L + FE
Sbjct: 144 GGVDMASQAIALARNPHVVVATPGRLLDHLQNTKGFH--LRQIKYLVMDEADRMLSMDFE 201
Query: 224 EELRVVFQCLP---KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQY 280
+E+ + + +P K R+T+LFSATMTS ++ L S E F+T + L Q Y
Sbjct: 202 KEINEILEVIPDCEKGRRTMLFSATMTSKVEKLQRASLVDPVRVEVSTKFQTPKKLLQNY 261
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
+FIP KD YL ++++ E G +S ++F +TC + L+L+L L A+ LH SQ
Sbjct: 262 LFIPAKYKDCYLTYLIN--EHAG-QSILVFGATCNNVQRLALMLRNLGFPAICLHGQMSQ 318
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
+RL AL +FKSG IL+ TDVASRGLDIP+VD+V+N+D+P + +DY+HRVGRTARAGR
Sbjct: 319 PKRLGALTKFKSGGRDILICTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGR 378
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
G A++ VTQ DV++ +E ++G +L E++ E+EVL + RV A+R+AT +L
Sbjct: 379 SGKAIAMVTQYDVEVYQRLEHLLGHRLPEYKLAEEEVLLLLERVNDAQRLATREL 433
>gi|367004050|ref|XP_003686758.1| hypothetical protein TPHA_0H01160 [Tetrapisispora phaffii CBS 4417]
gi|357525060|emb|CCE64324.1| hypothetical protein TPHA_0H01160 [Tetrapisispora phaffii CBS 4417]
Length = 433
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 179/423 (42%), Positives = 265/423 (62%), Gaps = 12/423 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL++W V+ + + PT +Q++CIP IL G+D +G A+TGSGKT AFA P+L
Sbjct: 5 SFKSLGLSKWLVEALNAMRISTPTAIQSNCIPAILNGRDCIGGAKTGSGKTVAFAAPMLT 64
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP G+ +++TPTRELA Q+AEQF ALG+ +++R +VVGG ++ QA L +PH
Sbjct: 65 KWSEDPSGMFGVILTPTRELAMQIAEQFTALGASMNIRICLVVGGESIVKQALELQKKPH 124
Query: 181 VVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--NR 237
+IATPGR+ ++ D RTKFLVLDEAD +L F ++L V Q LP R
Sbjct: 125 FIIATPGRLAHHIMASGEDTVGGLIRTKFLVLDEADILLTSTFSKDLAVCIQKLPAKDKR 184
Query: 238 QTLLFSATMTSDLQTLLELSANKA----YFYEA--YEGFKTVETLKQQYIFIPKNVKDVY 291
QTLLF+AT+T ++ L + Y YE + TLK +Y+ +P VK+ Y
Sbjct: 185 QTLLFTATITDQVRALQNAPTQEYKPPLYCYEVGTVDTVAIPSTLKVEYLLVPDYVKEAY 244
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +L+ E SAI+FV+ + +L L EL+ +LHS Q +R ++L RF+
Sbjct: 245 LYQLLT-CETYKDSSAIVFVNRTATAEVLRRTLRELEIRVTSLHSQLPQQERTNSLQRFR 303
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+ A +L+ATDVA+RGLDIP V+LV+NYDIP+ P ++HR GRTARAGR G A+SFVT
Sbjct: 304 ANAARVLIATDVAARGLDIPIVELVINYDIPQDPDTFIHRSGRTARAGRKGDAISFVTPR 363
Query: 412 DVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKK 469
D+ I IE + K++E+ + + V+ +T+V KA+R + M + + F EK + +K+
Sbjct: 364 DITRIQSIEERINKKMEKCDKVHDTAVIRKALTKVTKAKRESLMAMEKENFGEKRRLQKQ 423
Query: 470 QKL 472
+ +
Sbjct: 424 RNI 426
>gi|302656972|ref|XP_003020220.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
0517]
gi|291184030|gb|EFE39602.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
0517]
Length = 528
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 183/429 (42%), Positives = 266/429 (62%), Gaps = 19/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LGLA W V + K + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA PILH
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+G+ A+++TPTRELA Q+ EQ KA+ + L+ ++ GG D+ QA L RPH
Sbjct: 160 KWSEDPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPH 219
Query: 181 VVIATPGRIKVLLE---EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL---- 233
+VIATPGR+ ++ ED I R + +VLDEADR+L G L V CL
Sbjct: 220 IVIATPGRLADHIKSSGEDTIIG--LKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277
Query: 234 -PKNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVETLKQQYIFIPKNV 287
+RQTLLF+AT+T +++ L + + NK + + E TLKQ Y+ +P N
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
++ +L VL E +S IIF + ++ LL +L L +LHS QS+R++ L
Sbjct: 338 REAFL-QVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANL 396
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
RF++ A +L+ATDVA+RGLDIP+V LV+NYD+PR P DY+HRVGRTARAGR G A++
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE- 466
V Q DV L+ IEA VGKQ+ +E + S I + + V + K G ++ ++
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKATVLKEVGSTKREAMGEIDEGRDV 516
Query: 467 --RKKQKLK 473
R+ +KLK
Sbjct: 517 LGRRVRKLK 525
>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|442570013|sp|Q75EW9.2|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|374105700|gb|AEY94611.1| FAAL041Cp [Ashbya gossypii FDAG1]
Length = 486
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 179/396 (45%), Positives = 252/396 (63%), Gaps = 6/396 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L ++ C L +PTP+Q+ IP L+GKD++GLAQTGSGKTAAFA+PIL+
Sbjct: 67 SFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILN 126
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM +PH
Sbjct: 127 RLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 186
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE + +FLV+DEADR+LD+ F L + + +P K R T
Sbjct: 187 IIIATPGRLMDHLENTKGF--ALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTT 244
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q I +P +K+ +L+++L+
Sbjct: 245 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLN-- 302
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G ++ I+F T + +S L L+ A ALH +Q+QR AL FK+G+ +IL+
Sbjct: 303 EFIG-KTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILV 361
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VDLV+NYDIP + Y+HRVGRTARAGR G +VS V+Q D++LI I
Sbjct: 362 ATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRI 421
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
E V+GK+L + + VLS V KA M+L
Sbjct: 422 EEVLGKKLPKENVDKSIVLSLRDSVDKANGEVIMEL 457
>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
Length = 399
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/359 (48%), Positives = 237/359 (66%), Gaps = 9/359 (2%)
Query: 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRE 139
+PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL L A+ PY ALV+ PTRE
Sbjct: 5 KPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY--FALVLAPTRE 62
Query: 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI 199
LA+Q+ + F ALGS + LR +VGGMD++ QA+ LM +PHV++ATPGRI LE
Sbjct: 63 LAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGF 122
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSAN 259
K+LV+DEADR+LD+ F L + + +P R T LFSATMT+ ++ L S +
Sbjct: 123 S--LKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLH 180
Query: 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319
++T + L Q + + K+ L+H+L+ E MG +S I+F T
Sbjct: 181 NPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLN--EFMG-KSIIVFTRTVAHAQR 237
Query: 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
+LL L AV LH SQSQRL +L++FKS QA IL+ATDVA+RGLDIP+VD+V+NY
Sbjct: 238 TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINY 297
Query: 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
DIP + Y+HRVGRTARAGR G ++S +TQ D+++ IE+V+GK+L + + +EVL
Sbjct: 298 DIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKEDKPPKEVL 356
>gi|295671282|ref|XP_002796188.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284321|gb|EEH39887.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 543
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 187/435 (42%), Positives = 271/435 (62%), Gaps = 17/435 (3%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
T +D + +FA LGLA W V + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT A
Sbjct: 108 TPSDGS-SFATLGLAPWLVGSLSAMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVA 166
Query: 114 FALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
FA PIL + +EDP G+ A+V+TPTRELA Q+ EQ KA+ + L+ ++ GG ++ QA
Sbjct: 167 FAAPILQKWSEDPLGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAI 226
Query: 174 SLMNRPHVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVG---FEEELRVV 229
+L RPHVVIATPGR+ + D +R +F+VLDEADR+L+ G +L
Sbjct: 227 ALSQRPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLPDLETC 286
Query: 230 FQCLPKN--RQTLLFSATMTSDLQTLLELS--ANKAYFYE---AYEGFKTV-ETLKQQYI 281
LP + RQTLLF+AT+T +++ L + A+K + + E T+ TLKQ Y+
Sbjct: 287 LSALPPSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYL 346
Query: 282 FIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341
+P ++ +L HVL E ++AIIF + ++ LL +L L A +LHS QS
Sbjct: 347 LVPLTHREAFL-HVLLSTEGNSSKAAIIFCNRTKTADLLERMLRRLGHRATSLHSLLPQS 405
Query: 342 QRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG 401
+R + L RF++ A IL+ATDVA+RGLDIP+V LV+N+D+PR P DYVHRVGRTARAGR
Sbjct: 406 ERTANLSRFRASAAPILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRE 465
Query: 402 GLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFE 461
G AV+ V Q DV L+ IE VG+++EE++ + + I R + V K G
Sbjct: 466 GEAVTLVGQRDVQLVLAIEDRVGRKMEEWKEEGVSIEGRIVRGGILKEVGEAKREATGEI 525
Query: 462 EKAKE---RKKQKLK 473
E+ ++ R+ +KLK
Sbjct: 526 EEGRDVLGRRVRKLK 540
>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
Length = 483
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/380 (45%), Positives = 241/380 (63%), Gaps = 9/380 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L +++ + + +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL
Sbjct: 69 TFKELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 128
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A+ PY LV+ PTRELA+Q+ E F ALGS + LR +VGGMD++ QA+ LM +
Sbjct: 129 SLWHAQQPY--FGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 186
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGRI LE K+LV+DEADR+LD+ F L + + +P R
Sbjct: 187 PHIIVATPGRIMDHLEHTKGF--TLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRT 244
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ ++ L S + ++T + L Q + + K+ L+H+L++
Sbjct: 245 TYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNE 304
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+S I+F T +LL L AV LH SQSQRL +L++FKS A IL
Sbjct: 305 FMS---KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANIL 361
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S +TQ D+++
Sbjct: 362 IATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 421
Query: 419 IEAVVGKQLEEFECKEQEVL 438
IE+V+G +L + + +EVL
Sbjct: 422 IESVLGYKLPKEDKPPKEVL 441
>gi|448535294|ref|XP_003870949.1| Rrp3 protein [Candida orthopsilosis Co 90-125]
gi|380355305|emb|CCG24822.1| Rrp3 protein [Candida orthopsilosis]
Length = 481
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 180/417 (43%), Positives = 259/417 (62%), Gaps = 21/417 (5%)
Query: 36 KNAKTTQLEKFTNPDPNST---TTDSTV---------TFAGLGLAEWAVQTCKELGMRRP 83
+ +K + E + D NS+ TT++T+ TFA L L ++ +++ +P
Sbjct: 35 QESKESSHETDGDKDANSSVASTTETTIDPDAELKFNTFAELNLVPDLLEAIQQMNFAKP 94
Query: 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRELA 141
TP+Q+ IP LEGKD++GLA TGSGKTAAFA+PIL L A+ PY LV+ PTRELA
Sbjct: 95 TPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIPILQALWHAQTPY--FGLVLAPTRELA 152
Query: 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPP 201
+Q+ + F ALG+ + LR +VGGMD++ QA+ LM +PH+++ATPGRI LE
Sbjct: 153 FQIKDTFDALGATMGLRSVCIVGGMDMMDQARDLMRKPHIIVATPGRIMDHLEHTKGFS- 211
Query: 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKA 261
K+LV+DEADR+LD+ F L + + +P R T LFSATMT+ ++ L S +
Sbjct: 212 -LKNLKYLVMDEADRLLDMDFGPALDKILKVIPPKRTTYLFSATMTNKIEKLQRASLHNP 270
Query: 262 YFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLS 321
++T + L Q + + K+ L+H+L+ E MG +S I+F T +
Sbjct: 271 VRVAVSTKYQTADNLVQSMMLVNDGYKNTILIHLLN--EFMG-KSIIVFTRTVAHAQRTA 327
Query: 322 LLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI 381
LL L AV LH SQ+QRL +L++FKS +A IL+ATDVA+RGLDIP+VD+V+NYDI
Sbjct: 328 LLARILGFNAVPLHGQLSQAQRLGSLNKFKSSKANILVATDVAARGLDIPSVDVVINYDI 387
Query: 382 PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
P + Y+HRVGRTARAGR G ++S +TQ D+++ IE +GK+L + E +EVL
Sbjct: 388 PTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIENALGKKLPKEEKPSKEVL 444
>gi|363752960|ref|XP_003646696.1| hypothetical protein Ecym_5095 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890332|gb|AET39879.1| hypothetical protein Ecym_5095 [Eremothecium cymbalariae
DBVPG#7215]
Length = 438
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 180/420 (42%), Positives = 263/420 (62%), Gaps = 12/420 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W V+ + + +PT VQ CIP+IL+G D +G A+TGSGKT AFA P+L
Sbjct: 5 FKSLGLSKWLVEALHSMKITQPTIVQKACIPEILKGCDCIGGAKTGSGKTIAFAAPMLSN 64
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+ DP G+ +V+TPTRELA Q+AEQF ALGS ++++ +VVGG D++ QA L RPH
Sbjct: 65 WSADPSGMFGVVLTPTRELAMQIAEQFTALGSIMNIKVALVVGGDDIVKQALELQRRPHF 124
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ ++ D R K+LVLDEAD +L F ++L LP + RQ
Sbjct: 125 IIATPGRLAHHIMHSGEDTIGGLRRVKYLVLDEADILLTNTFGKDLATCLSVLPPKEKRQ 184
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
LLF+AT+T ++ L E + ++ E + + LK +Y+ +P++VK+ YL
Sbjct: 185 NLLFTATITDQVKALKEAPRVEGKPPVFSFQVEDLDCLAIPKALKTEYLLVPEHVKEAYL 244
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+LS E+ ++ I+FV+ S +L L LD +LHS Q +R ++L RF++
Sbjct: 245 YQILSS-EEYNDKTVIVFVNRTVSAEILRRTLRLLDVRVTSLHSQLPQKERTNSLQRFRA 303
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIP V LVLNYDIP P Y+HRVGRTARAGR G ++SFV+ D
Sbjct: 304 NAARILIATDVASRGLDIPAVQLVLNYDIPANPDTYIHRVGRTARAGRSGESLSFVSPKD 363
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE+ + K+++EF + + V+ +T+V A+R + M + +GF EK K+++ +
Sbjct: 364 VSRIKAIESRINKKMDEFTKVGDTAVIRKALTKVTVAKRESLMAMDKEGFGEKRKQQRNK 423
>gi|315055381|ref|XP_003177065.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
gi|311338911|gb|EFQ98113.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
Length = 528
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 183/429 (42%), Positives = 266/429 (62%), Gaps = 19/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LGLA W V + K + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA PILH
Sbjct: 100 SFASLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ + DP+G+ A+++TPTRELA Q+ EQ KA+ + L+ ++ GG D+ QA L RPH
Sbjct: 160 KWSADPFGIYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPH 219
Query: 181 VVIATPGRIKVLLE---EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-- 235
+VIATPGR+ ++ ED I R + +VLDEADR+L G L V CL
Sbjct: 220 IVIATPGRLADHIKSSGEDTIIG--LKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277
Query: 236 ---NRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVETLKQQYIFIPKNV 287
+RQTLLF+AT+T +++ L + + N+ + + E TLKQ Y+ +P N
Sbjct: 278 ASTDRQTLLFTATVTPEVRALKSMPRAKNRPPIFVTEISTENTTIPPTLKQTYLQVPLNH 337
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
++ +L HVL E +S IIF + ++ LL +L L +LHS QS+R++ L
Sbjct: 338 REAFL-HVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANL 396
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
RF++ A +L+ATDVA+RGLDIP+V LV+NYD+PR P DY+HRVGRTARAGR G A++
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE- 466
V Q DV L+ IEA VGKQ+ +E + S I + + V + K G ++ ++
Sbjct: 457 VGQRDVQLVMAIEARVGKQMLAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516
Query: 467 --RKKQKLK 473
R+ +KLK
Sbjct: 517 LGRRVRKLK 525
>gi|354548378|emb|CCE45114.1| hypothetical protein CPAR2_701180 [Candida parapsilosis]
Length = 478
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 184/425 (43%), Positives = 260/425 (61%), Gaps = 15/425 (3%)
Query: 16 KPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTC 75
K K SK + S A TT+ T DP++ +T FA L L ++
Sbjct: 30 KQKQLQESKESSDGDKTASSSVAATTE----TTIDPDAELKFNT--FAELNLVPDLLEAI 83
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALV 133
+++ +PTP+Q+ IP LEGKD++GLA TGSGKTAAFA+PIL L A+ PY LV
Sbjct: 84 QQMKFTKPTPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIPILQALWHAQTPY--FGLV 141
Query: 134 ITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLL 193
+ PTRELA+Q+ + F ALG+ + LR +VGGMD++ QA+ LM +PH+V+ATPGRI L
Sbjct: 142 LAPTRELAFQIKDTFDALGTTMGLRSVCIVGGMDMMDQARDLMRKPHIVVATPGRIMDHL 201
Query: 194 EEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL 253
E K+LV+DEADR+LD+ F L + + +P R T LFSATMT+ ++ L
Sbjct: 202 EHTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKVIPPKRTTYLFSATMTNKIEKL 259
Query: 254 LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVST 313
S + ++T + L Q + + K+ L+H+L+ E MG +S I+F T
Sbjct: 260 QRASLHNPVRVAVSTKYQTADNLVQSMMLVNDGYKNTILIHLLN--EFMG-KSIIVFTRT 316
Query: 314 CRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTV 373
+LL L AV LH SQ+QRL +L++FKSG+A IL+ATDVA+RGLDIP+V
Sbjct: 317 VAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKFKSGKANILVATDVAARGLDIPSV 376
Query: 374 DLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK 433
D+V+NYDIP + Y+HRVGRTARAGR G ++S +TQ D+++ IE +GK+L + +
Sbjct: 377 DVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIENALGKKLPKEDKP 436
Query: 434 EQEVL 438
+EVL
Sbjct: 437 SKEVL 441
>gi|50302587|ref|XP_451229.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690512|sp|Q6CXW0.1|DBP8_KLULA RecName: Full=ATP-dependent RNA helicase DBP8
gi|49640360|emb|CAH02817.1| KLLA0A05203p [Kluyveromyces lactis]
Length = 435
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 177/425 (41%), Positives = 262/425 (61%), Gaps = 12/425 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S F LG ++W V+ + + +PT +Q CIP+IL+G+D +G A TGSGKT AFA P
Sbjct: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + +EDP G+ +V+TPTRELA Q+AEQF A GS +++R +VVGG ++ QA L
Sbjct: 62 MLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
Query: 178 RPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PK 235
RPH +IATPGR+ +L D R KFLVLDEAD +L F ++L L PK
Sbjct: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
Query: 236 N-RQTLLFSATMTSDLQTLLELSANKA------YFYEAYEGFKTVETLKQQYIFIPKNVK 288
N RQ LLF+ATMT ++ L + + + E+ + +TL+ Y+ +P++VK
Sbjct: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK 241
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL +L+ E S IIFV+ + +L L+ LD +LHS Q +R +++
Sbjct: 242 ESYLYQILTS-EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A +L+ATDVASRGLDIP V+LV+NYDIP P ++HR GRTARAGR G ++ FV
Sbjct: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFV 360
Query: 409 TQNDVDLIHEIEAVVGKQLEEF-ECKEQEVL-SDITRVYKARRVATMKLMDDGFEEKAKE 466
T+ D+ + IE + K++EEF + + V+ +T+V A+R + M + +GF E+ K
Sbjct: 361 TEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKL 420
Query: 467 RKKQK 471
+K++
Sbjct: 421 QKRKN 425
>gi|158292622|ref|XP_314012.3| AGAP005130-PA [Anopheles gambiae str. PEST]
gi|157017078|gb|EAA09455.3| AGAP005130-PA [Anopheles gambiae str. PEST]
Length = 531
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/419 (42%), Positives = 262/419 (62%), Gaps = 7/419 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL W + ++LG+RRPTP+Q CIP+IL+G+D +G A+TGSGKT AFALPIL +
Sbjct: 9 FSDLGLTYWITRQTEKLGLRRPTPIQVECIPRILQGQDCIGAAKTGSGKTFAFALPILQK 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELA+Q+AEQF G ++ R VV GG D L +++ L RPH+
Sbjct: 69 LSEEPTANFALVLTPTHELAHQIAEQFIVAGQPMNARVCVVTGGTDYLIESQQLEKRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++A PGR+ L F+ +FLV+DEADR+L F+E+L V+ + LP RQ L
Sbjct: 129 IVAMPGRLADHLTGCNTYS--FAALQFLVVDEADRMLCGSFDEDLMVINRFLPAKRQNLF 186
Query: 242 FSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM- 299
FSAT+ L+T + A+ + + TVETL Q+Y+ +D ++ L K
Sbjct: 187 FSATLKDFLKTSIVFPIADDVFEWSEQSPVATVETLDQRYLLCADYDRDTVMVEALRKYK 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
ED S +IF ++ + C +LS+ L V LH F Q +R++AL++FKS I++
Sbjct: 247 EDQEDASIMIFTNSKKDCQILSMSLNSFGFSNVCLHGFLRQRERVAALNKFKSKHVRIMI 306
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT-QNDVDLIHE 418
ATDVASRGLDI V LV+N+ +P+ P +Y+HRVGRTARAGR G+A+S + D++ + E
Sbjct: 307 ATDVASRGLDIHDVQLVVNHRLPKKPIEYIHRVGRTARAGRAGMAISILRFPRDLEALGE 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IEA++ +L E+ ++ V +V AR A + L + F+E ++ K ++L+ + E
Sbjct: 367 IEALINTKLTEYSVDDRLVQRIFMQVKVARAEAEINLDNKDFDE--RKHKYRRLRWIQE 423
>gi|366994708|ref|XP_003677118.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
gi|342302986|emb|CCC70763.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
Length = 502
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/417 (43%), Positives = 263/417 (63%), Gaps = 7/417 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ L L +Q CK L +PTP+Q+ IP L+G D++GLAQTGSGKTAAFA+PIL+
Sbjct: 83 SFSELDLVPELLQACKNLNYTKPTPIQSRSIPPALKGNDIIGLAQTGSGKTAAFAIPILN 142
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM +PH
Sbjct: 143 SLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 202
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE + K+LV+DEADR+LD+ F L + + LP + R T
Sbjct: 203 IIIATPGRLMDHLENTKGFS--LRKLKYLVMDEADRLLDMEFGPVLDRILKILPTQGRTT 260
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q I +P +KD YL+++L+
Sbjct: 261 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKDTYLVYLLN-- 318
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G ++ IIF T + +S L L+ A ALH +Q+QR AL FK+G+ +IL+
Sbjct: 319 EFIG-KTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKSILV 377
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI I
Sbjct: 378 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 437
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
E V+GK+L + ++ +L V KA M+ M+ +EK K ++ +M++
Sbjct: 438 EEVLGKKLPKESVDKEMILHFRDSVDKANGEVIME-MNRRNKEKQLRGKGRRGRMMS 493
>gi|327307374|ref|XP_003238378.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
gi|326458634|gb|EGD84087.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
Length = 528
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 184/429 (42%), Positives = 266/429 (62%), Gaps = 19/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LGLA W V + K + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA PILH
Sbjct: 100 SFSSLGLASWLVSSLKAMEIKRPTAIQKSCIPEIMKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+GV A+++TPTRELA Q+ EQ KA+ + L+ ++ GG D+ QA L RPH
Sbjct: 160 KWSEDPFGVYAVILTPTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPH 219
Query: 181 VVIATPGRIKVLLE---EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL---- 233
+VIATPGR+ ++ ED I R + +VLDEADR+L G L V CL
Sbjct: 220 IVIATPGRLADHIKSSGEDTIIG--LKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALP 277
Query: 234 -PKNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVETLKQQYIFIPKNV 287
+RQTLLF+AT+T +++ L + + NK + + E TLKQ Y+ +P N
Sbjct: 278 PSSDRQTLLFTATVTPEVRALKSMPRAKNKLPIFVSEISTENTTIPPTLKQTYLQVPLNH 337
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
++ +L HVL +S IIF + ++ LL +L L +LHS QS+R++ L
Sbjct: 338 REAFL-HVLLSTGGNSSKSTIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANL 396
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
RF++ A +L+ATDVA+RGLDIP+V LV+NYD+PR P DY+HRVGRTARAGR G A++
Sbjct: 397 SRFRASAARLLVATDVAARGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITL 456
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE- 466
V Q DV L+ IEA VGKQ+ +E + S I + + V + K G ++ ++
Sbjct: 457 VGQRDVQLVLAIEARVGKQMVAWEEPGVNIESRIVKGTVLKEVGSTKREAMGEIDEGRDV 516
Query: 467 --RKKQKLK 473
R+ +KLK
Sbjct: 517 LGRRVRKLK 525
>gi|170099199|ref|XP_001880818.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644343|gb|EDR08593.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 449
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 183/424 (43%), Positives = 265/424 (62%), Gaps = 15/424 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLG--------LAQTGSGK 110
T TFA LG+ +Q +EL PT +QT CIP+ + G+DV+G +A TGSGK
Sbjct: 3 TKTFAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDVIGSVWKLVIGIAPTGSGK 62
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD-LL 169
T AFA+PILHRL ++P G A V++PTRELAYQ++ QF+ALG+ + +R V+VGG D +
Sbjct: 63 TLAFAIPILHRLWDNPQGYFACVLSPTRELAYQISAQFEALGAAMGVRSVVIVGGDDDRV 122
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA L +PH+++ATPGR+ L P + VLDEADR+LD+ F+ E+ +
Sbjct: 123 QQAVQLAQKPHIIVATPGRLHDHLNFHTTQPII--HLGLQVLDEADRLLDLDFQREITEI 180
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEA-YEGFKTVETLKQQYIFIPKNVK 288
Q +PK R T LFSATMT+++ L S + +A + TV TL Q Y+ P K
Sbjct: 181 MQSIPKERCTYLFSATMTANVSKLQRASLSDPVRVDASLFRYTTVSTLLQHYLLCPLVEK 240
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+V L+++++ + I I+FV T LS++L L EAV LH +QSQRL
Sbjct: 241 EVTLVYLINSLAQNLI---IVFVRTVADAKCLSIILRSLGFEAVPLHGELTQSQRLGVFT 297
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RFKSG++ IL+ATDVASRGLD+P VD+V+NYD+P + +DY+HRVGRTARAGR G ++ V
Sbjct: 298 RFKSGKSRILVATDVASRGLDVPNVDVVINYDVPTHSKDYIHRVGRTARAGRAGKSILMV 357
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ D +L+ +E V+ ++L+ + QE+ RV +A R+A +L ++ +++
Sbjct: 358 TQYDAELMLRLEKVLNRKLDLYPTDLQEIALLKERVVEAGRLARNQLNEESKARGGGKKR 417
Query: 469 KQKL 472
+ KL
Sbjct: 418 RYKL 421
>gi|70999626|ref|XP_754530.1| ATP dependent RNA helicase (Dbp8) [Aspergillus fumigatus Af293]
gi|74674345|sp|Q4WXW1.1|DBP8_ASPFU RecName: Full=ATP-dependent RNA helicase dbp8
gi|66852167|gb|EAL92492.1| ATP dependent RNA helicase (Dbp8), putative [Aspergillus fumigatus
Af293]
Length = 526
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 266/429 (62%), Gaps = 20/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA L +A W V + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AF++P+L
Sbjct: 97 SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 156
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP+G+ +V+TPTRELA Q+ EQ KA+ + ++ ++ GG D+ QA +L RPH
Sbjct: 157 KWAEDPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPH 216
Query: 181 VVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP----- 234
VVIATPGR+ ++ D R + +VLDEADR+L G L V CL
Sbjct: 217 VVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPS 276
Query: 235 KNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVE-TLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + SANK + + E T+ TLKQ Y+ +P +
Sbjct: 277 SERQTLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGTIPPTLKQTYLKVPLTHR 336
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL E + AI+F + ++ LL +L L +LHS QS+R + L
Sbjct: 337 EAFL-HVLLSTEGNASKPAIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLA 395
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A IL+ATDVASRGLDIPTV LV+NYD+PR P DYVHRVGRTARAGR G AV+ V
Sbjct: 396 RFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVTLV 455
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR------VYKARRVATMKLMDDGFEE 462
Q DV L+ IE VG+Q+EE+ + + + R V +A+R A +++ D+G +
Sbjct: 456 GQRDVQLVLAIEERVGRQMEEWSEEGVSIEGRLVRTGALKEVGEAKREAMVEI-DEGRDV 514
Query: 463 KAKERKKQK 471
++R K K
Sbjct: 515 LGRKRNKLK 523
>gi|344234177|gb|EGV66047.1| hypothetical protein CANTEDRAFT_129471 [Candida tenuis ATCC 10573]
gi|344234178|gb|EGV66048.1| ATP-dependent rRNA helicase RRP3 [Candida tenuis ATCC 10573]
Length = 485
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 258/412 (62%), Gaps = 11/412 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA L +++ + + +PTP+Q IP L GKD++GLAQTGSGKTAAFA+PIL
Sbjct: 74 SFAEFDLIPEILESIQAMKFTKPTPIQAESIPHALAGKDIIGLAQTGSGKTAAFAIPILQ 133
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A+ PY +LV+ PTRELA+Q+ E F ALGS + LR +VGGMD++ QA+ LM +
Sbjct: 134 ALWHAKTPY--FSLVLAPTRELAFQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRK 191
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHV++ATPGRI LE K+LV+DEADR+LD+ F L + + +P R
Sbjct: 192 PHVIVATPGRITDHLEHTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKVIPVERT 249
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
+ LFSATMT+ + L S ++T + L Q + + K+ +L+H+L+
Sbjct: 250 SYLFSATMTNKIAKLQRASLKNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTFLVHLLN- 308
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E MG +S I+F T + ++L L +V L+ SQ+QRL AL++FKSG+A IL
Sbjct: 309 -EFMG-KSIIVFTRTVANSERTAILTRLLGFSSVPLNGQLSQTQRLGALNKFKSGKANIL 366
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAG+ G ++S VTQ D++L
Sbjct: 367 IATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLR 426
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVA-TMKLMDDGFEEKAKERKK 469
IE+V+GK+L + ++VL+ + V+ R VA ++ M D E + +
Sbjct: 427 IESVLGKKLPKDPSPSKQVLNTL-HVHVDRAVAEAIRQMKDIHERRGNRNHR 477
>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/424 (40%), Positives = 260/424 (61%), Gaps = 11/424 (2%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
T+ +T + VTF LG+ + C L P+ +Q IP L+G+D++ LA+T
Sbjct: 16 TSSTQENTDAEHAVTFESLGVCPELCKACDVLQWEHPSKIQEETIPYALQGRDLIALAET 75
Query: 107 GSGKTAAFALPILHRLAED-PYGVL--ALVITPTRELAYQLAEQFKALGSGLHLRCEVVV 163
GSGKT AFA+PI+ +L + P+ L A V+ PTREL Q+ +QF+ LG+ ++L +V
Sbjct: 76 GSGKTGAFAIPIIQKLLDAAPHRKLTWACVLAPTRELCVQIGQQFEGLGASINLTTATIV 135
Query: 164 GGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223
GG+D++TQA SL +PH+++A+PGR+ LE KFLV+DEADR+L + FE
Sbjct: 136 GGLDMVTQAMSLSKKPHIIVASPGRLVDHLENTKGFH--LKTIKFLVMDEADRLLGMDFE 193
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFI 283
+ L + Q P++RQT LFSATMT+ + L S + E F + L Q Y+F+
Sbjct: 194 DALNKIVQSCPRDRQTFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFV 253
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P K YL +L+ + + + +IFV TC + ++ L L V LH +Q+ R
Sbjct: 254 PHKHKHAYLAALLAHFK---LSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHR 310
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
L AL++F++G ++L+ATDVA+RGLDIP+VD+V+N+D+P+ P +Y+HRVGRTARAGR G
Sbjct: 311 LGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGR 370
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
+V+ VTQ D++ IE GK++EEF E KE+ +S +V +A R +++ + EE
Sbjct: 371 SVTLVTQYDIEPFQRIENKQGKKMEEFPEVKEENAISLQEKVLEALRSTQLEMREQ--EE 428
Query: 463 KAKE 466
KE
Sbjct: 429 DIKE 432
>gi|397644308|gb|EJK76339.1| hypothetical protein THAOC_01902 [Thalassiosira oceanica]
Length = 476
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 183/422 (43%), Positives = 267/422 (63%), Gaps = 14/422 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA GL E + + L T +Q IP LEG+DV+GLA+TGSGKT AF++P+L+
Sbjct: 56 FASFGLHETLLSSIASLKWENATKIQASSIPPALEGRDVIGLAETGSGKTGAFSIPVLNY 115
Query: 122 LAEDPY-GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P V A+++ PTRELA+Q+ E ALGSG+ VVGG+D+ +QA +L PH
Sbjct: 116 LLEKPQRSVFAVILAPTRELAFQIHEVVAALGSGMGASSVCVVGGVDMASQAIALARNPH 175
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN---R 237
VV+ATPGR+ L+ + K+LVLDEADR+L + FE E+ + + +P + R
Sbjct: 176 VVVATPGRLLDHLQNTKGFH--LRQIKYLVLDEADRMLSMDFEREINEILEVIPDHEGGR 233
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T+LFSATMTS ++ L S E F+T + L Q Y+FIP KD YL ++++
Sbjct: 234 RTMLFSATMTSKVEKLQRASLVDPVRVEVSTKFQTPKKLLQSYLFIPAKYKDCYLTYLIN 293
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
E G +S ++F +TC + L+L+L L A+ LH SQ +RL AL +FK+G I
Sbjct: 294 --EHAG-QSILVFGATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALTKFKAGGRDI 350
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
++ TDVASRGLDIP+VD+V+N+D+P + +DY+HRVGRTARAGR G A++ VTQ DV++
Sbjct: 351 MICTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQ 410
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD-----DGFEEKAKERKKQKL 472
+E ++G++L E++ E+EVL + RV A+R+AT +L + DG + K R+
Sbjct: 411 RLEHLLGQRLPEYKLAEEEVLLLLERVNDAQRLATRELKEQISTRDGNRKGRKTREGMAT 470
Query: 473 KM 474
+M
Sbjct: 471 RM 472
>gi|344303537|gb|EGW33786.1| ATP-dependent rRNA helicase RRP3 [Spathaspora passalidarum NRRL
Y-27907]
Length = 475
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 173/380 (45%), Positives = 243/380 (63%), Gaps = 9/380 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ L L +++ + + +PTP+Q+ IP LEG D++GLAQTGSGKTAAFA+PIL
Sbjct: 64 SFSELKLVPELLESIQSMKFTKPTPIQSEAIPHALEGHDIIGLAQTGSGKTAAFAIPILQ 123
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A+ PY ALV+ PTRELA+Q+ E F ALGS + LR +VGGMD++ QA+ LM +
Sbjct: 124 ALWEAQSPY--FALVLAPTRELAFQIKETFDALGSTMGLRSVCIVGGMDMMDQARDLMRK 181
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHV++ATPGRI LE K+LV+DEADR+LD+ F L + + +P R
Sbjct: 182 PHVIVATPGRIMDHLETTKGFK--LKDLKYLVMDEADRLLDMDFGPALDRILKVIPTKRT 239
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ ++ L S + ++T + L Q + + K+ L+H+LS+
Sbjct: 240 TYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVHDGYKNTILIHLLSE 299
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E I I+F T +LL L AV LH SQ+QRL +L++FKS A IL
Sbjct: 300 YEGKLI---IVFTRTVAHAQRTALLCRILGFNAVPLHGQLSQAQRLGSLNKFKSRSANIL 356
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S +TQ D+++
Sbjct: 357 IATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 416
Query: 419 IEAVVGKQLEEFECKEQEVL 438
IE+V+GK+L + + +EVL
Sbjct: 417 IESVLGKKLPKEDMPPKEVL 436
>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
gi|160358661|sp|A7TS37.1|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 506
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 173/396 (43%), Positives = 252/396 (63%), Gaps = 6/396 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ L L ++ CK L +PTP+Q IP L+G D++GLAQTGSGKTAAFA+PIL+
Sbjct: 87 SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILN 146
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM +PH
Sbjct: 147 RLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPH 206
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE + KFLV+DEADR+LD+ F L + + +P + R T
Sbjct: 207 IIIATPGRLMDHLENTRGFS--LRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTT 264
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q I +P +K+ YL+++++
Sbjct: 265 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYLMN-- 322
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G ++ I+F T + ++ L L+ A ALH +Q+QR +L FK+G+ +IL+
Sbjct: 323 EFIG-KTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILV 381
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI I
Sbjct: 382 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 441
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
E V+GK+L + + +L+ V KA M+L
Sbjct: 442 EDVLGKKLPKENVNKDAILTLRDSVDKANGEVVMEL 477
>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/424 (40%), Positives = 256/424 (60%), Gaps = 11/424 (2%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
T +T + VTF LG+ + C L P+ +Q IP L+G+D++ LA+T
Sbjct: 16 TGSTQENTDAEHAVTFESLGVCPELCKACDVLQWEHPSKIQEETIPYALQGRDLIALAET 75
Query: 107 GSGKTAAFALPILHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVV 163
GSGKT AFA+PI+ +L A A V+ PTREL Q+ +QF+ LG+ ++L +V
Sbjct: 76 GSGKTGAFAIPIIQKLLDAAPHRKSTWACVLAPTRELCVQIGQQFEGLGASINLTTATIV 135
Query: 164 GGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223
GG+D++TQA +L +PH+++A+PGR+ LE KFLV+DEADR+L + FE
Sbjct: 136 GGLDMVTQAMALSKKPHIIVASPGRLVDHLENTKGFH--LKTIKFLVMDEADRLLGMDFE 193
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFI 283
+ L + Q P++RQT LFSATMT+ + L S + E F + L Q Y+F+
Sbjct: 194 DALNKIVQSCPRDRQTFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFV 253
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P K YL +L+ + + + +IFV TC + ++ L L V LH +Q+ R
Sbjct: 254 PHKHKHAYLAALLAHFK---LSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHR 310
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
L AL++F++G ++L+ATDVA+RGLDIP+VD+V+N+D+P+ P +Y+HRVGRTARAGR G
Sbjct: 311 LGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGR 370
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEE 462
+V+ VTQ D++ IE GK++EEF E KE+ +S +V +A R +++ + EE
Sbjct: 371 SVTLVTQYDIEPFQRIENKQGKKMEEFPEVKEENAMSLQEKVLEALRSTQLEMREQ--EE 428
Query: 463 KAKE 466
KE
Sbjct: 429 DIKE 432
>gi|225681783|gb|EEH20067.1| ATP-dependent RNA helicase dbp8 [Paracoccidioides brasiliensis
Pb03]
Length = 546
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 267/428 (62%), Gaps = 16/428 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LGLA W V + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA PIL
Sbjct: 117 SFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 176
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+G+ A+V+TPTRELA Q+ EQ KA+ + L+ ++ GG ++ QA +L RPH
Sbjct: 177 KWSEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRPH 236
Query: 181 VVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKN 236
VVIATPGR+ + D +R +F+VLDEADR+L+ G +L LP +
Sbjct: 237 VVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSALPPS 296
Query: 237 --RQTLLFSATMTSDLQTLLELS--ANKAYFYE---AYEGFKTV-ETLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + A+K + + E T+ TLKQ Y+ +P +
Sbjct: 297 TARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPLTHR 356
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL + ++AIIF + ++ LL +L L A +LHS QS+R + L
Sbjct: 357 EAFL-HVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTANLS 415
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A IL+ATDVA+RGLDIP+V LV+N+ +PR P DYVHRVGRTARAGR G AV+ V
Sbjct: 416 RFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVTLV 475
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE-- 466
Q DV L+ IE VG+++EE++ + + I R + V K G E+ ++
Sbjct: 476 GQRDVQLVLAIEDRVGRKMEEWKEEGVSIEGRIVRGGILKEVGEAKREATGEIEEGRDVL 535
Query: 467 -RKKQKLK 473
R+ +KLK
Sbjct: 536 GRRVRKLK 543
>gi|226289015|gb|EEH44527.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
Pb18]
Length = 546
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 267/428 (62%), Gaps = 16/428 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LGLA W V + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA PIL
Sbjct: 117 SFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 176
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP+G+ A+V+TPTRELA Q+ EQ KA+ + L+ ++ GG ++ QA +L RPH
Sbjct: 177 KWSEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRPH 236
Query: 181 VVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKN 236
VVIATPGR+ + D +R +F+VLDEADR+L+ G +L LP +
Sbjct: 237 VVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSALPPS 296
Query: 237 --RQTLLFSATMTSDLQTLLELS--ANKAYFYE---AYEGFKTV-ETLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + A+K + + E T+ TLKQ Y+ +P +
Sbjct: 297 TARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPLTHR 356
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL + ++AIIF + ++ LL +L L A +LHS QS+R + L
Sbjct: 357 EAFL-HVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTANLS 415
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A IL+ATDVA+RGLDIP+V LV+N+ +PR P DYVHRVGRTARAGR G AV+ V
Sbjct: 416 RFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVTLV 475
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE-- 466
Q DV L+ IE VG+++EE++ + + I R + V K G E+ ++
Sbjct: 476 GQRDVQLVLAIEDRVGRKMEEWKEEGVSIEGRIVRGGILKEVGEAKREATGEIEEGRDVL 535
Query: 467 -RKKQKLK 473
R+ +KLK
Sbjct: 536 GRRVRKLK 543
>gi|410079330|ref|XP_003957246.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
gi|372463831|emb|CCF58111.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
Length = 487
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/415 (42%), Positives = 260/415 (62%), Gaps = 7/415 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L +Q CK L +PTP+Q+ IP L GKD++GLAQTGSGKTAAFA+PIL+
Sbjct: 68 SFTELNLVPELIQACKNLNYEKPTPIQSKSIPPALNGKDIIGLAQTGSGKTAAFAIPILN 127
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L D A +++PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM +PH
Sbjct: 128 SLWHDQLPYYACILSPTRELAQQIKETFDSLGSLMGVRTVCIVGGMNMMDQARDLMRKPH 187
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE + ++LV+DEADR+LD+ F L + + LP + R T
Sbjct: 188 IIIATPGRLMDHLENTRGFS--LRKLRYLVMDEADRLLDMEFGPVLDRILKILPTEGRTT 245
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q + +P +K+ +L+++L++
Sbjct: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++ IIF T + ++ L L+ A ALH +Q+QR AL FK+G+ +IL+
Sbjct: 306 HG---KTFIIFTRTKANAERIAGLANLLEFNATALHGDLNQNQRTGALDLFKAGKRSILV 362
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI I
Sbjct: 363 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 422
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
E V+GK+L + + +LS V KA M+L + +EKA K ++ +M
Sbjct: 423 EEVLGKKLPKESVDKDIILSLRDSVDKANGEVVMEL-NRRSKEKAARGKGRRGRM 476
>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans CBS 6340]
Length = 525
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/396 (43%), Positives = 253/396 (63%), Gaps = 6/396 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ L L ++ C+ L +PTP+Q IP LEGKD++GLAQTGSGKTAAFA+PIL+
Sbjct: 106 SFSELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILN 165
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L D A V+ PTRELA Q+ E F +LG + +R +VGGM+++ QA+ LM +PH
Sbjct: 166 QLWHDQQPYYACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRKPH 225
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE + KFLV+DEADR+LD+ F L + + +P + R T
Sbjct: 226 IIIATPGRLMDHLENTKGFS--MRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTT 283
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q + +P +K+ +L+++L+
Sbjct: 284 YLFSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIYLLN-- 341
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G ++AI+F T + ++ L L+ A ALH +Q+QR AL FK+G+ +IL+
Sbjct: 342 EFLG-KTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSILV 400
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI I
Sbjct: 401 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 460
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
E V+G++L + + +LS V KA M+L
Sbjct: 461 EDVLGRKLPKENVDKGVILSLRDTVDKANGEVVMEL 496
>gi|154298930|ref|XP_001549886.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
gi|160380630|sp|A6SFV4.1|DBP8_BOTFB RecName: Full=ATP-dependent RNA helicase dbp8
gi|347836724|emb|CCD51296.1| hypothetical protein [Botryotinia fuckeliana]
Length = 545
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/432 (42%), Positives = 258/432 (59%), Gaps = 17/432 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD+ TFA L + W V + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA
Sbjct: 112 TDAQTTFAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFA 171
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL + AEDP+G+ ALV+TPTRELA Q+ EQFKA+ S L+ ++ GG D+ QA +L
Sbjct: 172 VPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATAL 231
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCL 233
RPH+VIATPGR+ + D R + +VLDEADR+L G L V +CL
Sbjct: 232 AQRPHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDEADRLLASGSVGSMLPDVEECL 291
Query: 234 -----PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQYIFI 283
P RQTLLF+AT+T +++ L ++ + E + +L Q ++ +
Sbjct: 292 SILPPPAKRQTLLFTATVTPEVRALKDMPRTPGKLPVFVCEVDTQALAIPPSLNQMHLQV 351
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P ++ YL H+ E +S +IF + + L+ LL LD ALHS Q QR
Sbjct: 352 PVTHREHYL-HMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLDHRVTALHSKLPQRQR 410
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVA+RGLDIP V LV+NYDIPR P DY+HRVGRTARAGR G
Sbjct: 411 IDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRKGE 470
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKLMDDG 459
AVSFV Q DV LI IE VG+Q+E + E V+ + ++ ++ M +++G
Sbjct: 471 AVSFVGQRDVQLIQAIENRVGRQMEAWAEDGVNLETRVIRESLKLVGEKKREAMLEIEEG 530
Query: 460 FEEKAKERKKQK 471
E K ++ K
Sbjct: 531 REVGGKRKRGMK 542
>gi|340505836|gb|EGR32122.1| hypothetical protein IMG5_095370 [Ichthyophthirius multifiliis]
Length = 540
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 251/397 (63%), Gaps = 21/397 (5%)
Query: 75 CKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134
C+ L PTP+Q +P L+ KD++ LA+TGSGKT +FALPIL + P+ AL++
Sbjct: 138 CQRLNYITPTPIQQKSLPHTLKKKDIIALAETGSGKTLSFALPILQQFLNQPHEYYALIL 197
Query: 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV------------- 181
+PTREL Q++E F+ LG L+ V+VGG+D + Q +L PH+
Sbjct: 198 SPTRELCVQISESFENLGKEFGLKVVVIVGGLDPIKQMIALSKNPHISIYYNIIYIYIYL 257
Query: 182 ---VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
V+ TPGRI+ + + KFLVLDEAD++L++ FE E+ + +PK R
Sbjct: 258 YILVVGTPGRIQYHFQNTKGFQ--MNNLKFLVLDEADKLLNMDFEAEINDILDKIPKERN 315
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ + L ++S E ++TV+TL QQY FIP KD YL +L+
Sbjct: 316 TFLFSATMTNKVHKLQKVSLRNPVKIEVSTKYQTVQTLIQQYCFIPIKYKDSYLAFILN- 374
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E+ G S IIFV+TC + L+L+L L +AV++H +Q++R +A+++FK GQ IL
Sbjct: 375 -ENQG-SSCIIFVTTCINSIRLTLMLRNLGFQAVSIHGQMNQTKRQTAINKFKDGQKKIL 432
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP +DLV+NY++P ++Y+HRVGRTARAGR G A+S ++Q D++ +
Sbjct: 433 VATDVASRGLDIPCIDLVINYELPANTKEYIHRVGRTARAGRKGNAISLISQYDLEAFLK 492
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE ++G +++++ +E + L R+ +A++++T +L
Sbjct: 493 IEDLLGIKIDQYNIEEYKALVFNERINEAQKISTKQL 529
>gi|145232875|ref|XP_001399810.1| ATP-dependent RNA helicase dbp8 [Aspergillus niger CBS 513.88]
gi|152013493|sp|A5AA68.1|DBP8_ASPNC RecName: Full=ATP-dependent RNA helicase dbp8
gi|134056731|emb|CAK44220.1| unnamed protein product [Aspergillus niger]
gi|350634649|gb|EHA23011.1| hypothetical protein ASPNIDRAFT_37042 [Aspergillus niger ATCC 1015]
Length = 522
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 181/433 (41%), Positives = 260/433 (60%), Gaps = 16/433 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
D+ +FA L +A W + + + +R+PT +Q CIP+IL G+D +G ++TGSGKT AF+
Sbjct: 88 NDAQNSFASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFS 147
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+P+L + AEDP+G+ LV+TPTRELA Q+ EQ KA+ + ++ ++ GG D+ QA +L
Sbjct: 148 VPMLQKWAEDPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRPQAVAL 207
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL- 233
RPHVVIATPGR+ + D R + +VLDEADR+L G L V CL
Sbjct: 208 AQRPHVVIATPGRLADHINTSGSDTIRGLKRVRMVVLDEADRLLAPGHGSMLPDVETCLS 267
Query: 234 ----PKNRQTLLFSATMTSDLQTLLEL---SANKAYFYE--AYEGFKTV-ETLKQQYIFI 283
RQTLLF+AT+T +++ L + S F + E ++ TLKQ Y+ +
Sbjct: 268 ALPPSSERQTLLFTATLTPEVRALKSMPRPSTKPPIFVTEISTENNASIPPTLKQTYLKV 327
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P ++ +L HVL E + AIIF + ++ LL +L L +LHS QS+R
Sbjct: 328 PMTHREAFL-HVLLSTEANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSER 386
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A +L+ATDVASRGLDIP+V+LV+N+D+PR P DYVHRVGRTARAGR G
Sbjct: 387 NANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGE 446
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
+V+ V Q DV L+ IE VG+Q+EE+ + V + R + V K G E+
Sbjct: 447 SVTLVGQRDVSLVLAIEERVGRQMEEWSEEGVSVEGRVVRTGVLKEVGEAKREAAGEIEE 506
Query: 464 AKE---RKKQKLK 473
++ RK+ KLK
Sbjct: 507 GRDVLGRKRNKLK 519
>gi|358372222|dbj|GAA88826.1| dead box ATP-dependent rna helicase [Aspergillus kawachii IFO 4308]
Length = 522
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 180/428 (42%), Positives = 261/428 (60%), Gaps = 16/428 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA L +A W + + + +R+PT +Q CIP+IL G+D +G ++TGSGKT AF++P+L
Sbjct: 93 SFASLKVAPWLIGSLTTMAVRKPTAIQKACIPEILSGRDCIGGSRTGSGKTIAFSVPMLQ 152
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP+G+ LV+TPTRELA Q+ EQ KA+ + ++ ++ GG D+ QA +L RPH
Sbjct: 153 KWAEDPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRPQALALAQRPH 212
Query: 181 VVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP----- 234
VVIATPGR+ + D R + +VLDEADR+L G L V CL
Sbjct: 213 VVIATPGRLADHINTSGTDTIRGLKRVRMVVLDEADRLLSPGHGSMLPDVETCLSALPPS 272
Query: 235 KNRQTLLFSATMTSDLQTLLELS--ANKAYFYE---AYEGFKTVE-TLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + A+K + + E ++ TLKQ Y+ +P +
Sbjct: 273 SERQTLLFTATLTPEVRALKSMPRPASKPPIFVTEISTENNASIPPTLKQTYLKVPMTHR 332
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL E + AIIF + ++ LL +L L +LHS QS+R + L
Sbjct: 333 EAFL-HVLLSTEANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLA 391
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A +L+ATDVASRGLDIP+V+LV+N+D+PR P DYVHRVGRTARAGR G +V+ V
Sbjct: 392 RFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLV 451
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE-- 466
Q DV L+ IE VG+Q+EE+ + V + R + V K +G E+ ++
Sbjct: 452 GQRDVSLVLAIEERVGRQMEEWSEEGVSVEGRVVRTGVLKEVGEAKREANGEIEEGRDVL 511
Query: 467 -RKKQKLK 473
RK+ KLK
Sbjct: 512 GRKRNKLK 519
>gi|407409979|gb|EKF32597.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 499
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 257/426 (60%), Gaps = 33/426 (7%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ +W + C + + PTP+Q CIP IL GK V+G A TGSGKTAAFALP+L
Sbjct: 4 FEQLGIHQWLSKQCAYMALHHPTPIQRLCIPAILAGKCVVGGAATGSGKTAAFALPVLQI 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
LAED YGV ALV+TP+RELAYQ+ +QF ALG+ LH+R +++GG+ Q +L RPHV
Sbjct: 64 LAEDLYGVFALVLTPSRELAYQIVDQFVALGAPLHIRTAIIIGGLPHEQQLDALKARPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---KNRQ 238
V+ATPGR+K +LE+ P+ F +FLVLDEADR+ E ++ V + LP R+
Sbjct: 124 VVATPGRLKFMLEKFPEARKAFLHLRFLVLDEADRLTSDDIETDVEEVVRLLPPARPERR 183
Query: 239 TLLFSATMTSDLQTL-----------------LELSANKAYFYEA------YEGFKTVET 275
LLF+AT+ L + LE+ A A E + E+
Sbjct: 184 VLLFTATLEQRLTRVEEGGWLVRLGITPAAQHLEVFATNTMVTVADDNGATTESYAFAES 243
Query: 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSLLLEELDQEAVAL 334
LKQ+Y+FIP VK YL+ + + G +S I+F ++C C ++ L L+ L +L
Sbjct: 244 LKQRYLFIPNMVKLAYLV---ASIRAAGTEQSTIVFTNSCMRCEVVRLTLQLLGFPVCSL 300
Query: 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGR 394
+S SQ R+ L FK G A IL+ATD+ASRGLDIP V LVL+YD+P+ Y+HRVGR
Sbjct: 301 NSVISQKHRVDNLATFKLGIARILVATDIASRGLDIPAVGLVLHYDLPKQLSTYLHRVGR 360
Query: 395 TARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK---EQEVLSDITRVYKARRVA 451
TARAGR GL+V+FV++ DVDL+ +E + + ++ K E+EVL + V A+ A
Sbjct: 361 TARAGREGLSVAFVSEYDVDLVRRLERKMNCTMTLWKAKGVNEKEVLKLLDEVSAAKVQA 420
Query: 452 TMKLMD 457
+++ D
Sbjct: 421 KIQVED 426
>gi|340905357|gb|EGS17725.1| hypothetical protein CTHT_0070680 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 613
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 203/484 (41%), Positives = 280/484 (57%), Gaps = 36/484 (7%)
Query: 7 LDRNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLG 66
+ RN AKP ++P EPEPES TT++ DPN+T F LG
Sbjct: 147 IKRNNAQPAKP-----AEPPKAAEPEPESSGGLTTRV------DPNTT-------FESLG 188
Query: 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP 126
+A W VQ+ + +RRPTP+Q IP +L+G+D +G ++TGSGKT AF++PIL + AE+P
Sbjct: 189 VAPWLVQSLANMAIRRPTPIQRESIPMLLKGRDCIGGSRTGSGKTVAFSVPILQKWAENP 248
Query: 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATP 186
+ AL++TPTRELA Q+ EQ KA+ S L+ +V GG D+ QA +L +RPH+VIATP
Sbjct: 249 SAIFALILTPTRELALQIFEQIKAISSPYSLKAILVTGGTDMRPQAIALASRPHIVIATP 308
Query: 187 GRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL-----PKNRQT 239
GR+ + D R +F+VLDEADR+L G L V +CL P RQT
Sbjct: 309 GRLADHIRTSGEDTVCGLRRVRFVVLDEADRLLAANGPGSMLPDVEECLSALPPPAERQT 368
Query: 240 LLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMH 294
LLF+AT+T ++ L + + E E TL+Q ++ +P ++ YL H
Sbjct: 369 LLFTATITPEVMALKSMPRAPGRPPVFVCEVDTENLAIPPTLRQMHLQVPVTHREHYL-H 427
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
V +S IIF + + L LL L ALHS Q QR+ L RF++
Sbjct: 428 VFLLTPQNVDKSVIIFCNRTSTADFLHHLLRLLGHRVTALHSRLPQRQRIDNLGRFRAQA 487
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
A IL+ATDVASRGLDIP V LV+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DV+
Sbjct: 488 ARILVATDVASRGLDIPEVKLVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVE 547
Query: 415 LIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
L+ IE VG+Q+E + + E V+ D ++ ++ + +++G E K RK+
Sbjct: 548 LVLAIEKRVGRQMEAWSEEGVNLETRVIRDALKLVGEKKREALLEVEEGREVGGK-RKRT 606
Query: 471 KLKM 474
KLK+
Sbjct: 607 KLKL 610
>gi|327351047|gb|EGE79904.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ATCC
18188]
Length = 553
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 183/435 (42%), Positives = 267/435 (61%), Gaps = 16/435 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+D + +FA LGLA W V + + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA
Sbjct: 117 SDGSSSFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFA 176
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
PIL + AEDP+GV A+++TPTRELA Q+ EQ KA+ + L+ ++ GG ++ QA +L
Sbjct: 177 APILQKWAEDPFGVFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIAL 236
Query: 176 MNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
RPH+VIATPGR+ + D +RT+ +VLDEADR+L G L V CL
Sbjct: 237 SQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLS 296
Query: 235 K-----NRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTV-ETLKQQYIFI 283
+RQTLLF+AT+T +++ L + ANK + + E T+ TLKQ Y+ +
Sbjct: 297 ALPPSTSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQV 356
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P ++ +L H L E + +IIF + ++ LL +L L +LHS QS+R
Sbjct: 357 PLTHREAFL-HTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSER 415
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVA+RGLDIP+V LV+N+D+PR P DYVHRVGRTARAGR G
Sbjct: 416 TANLSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGE 475
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
AV+ V Q DV L+ IE VGK++ E++ + + + R + V K G E+
Sbjct: 476 AVTLVGQRDVQLVLAIEDRVGKKMIEWKEEGVSIEGRVVRGGIIKEVGEAKREAMGEVEE 535
Query: 464 AKE---RKKQKLKML 475
++ R+ +KLK +
Sbjct: 536 GRDVLGRRVRKLKKI 550
>gi|219111811|ref|XP_002177657.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410542|gb|EEC50471.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 455
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 204/454 (44%), Positives = 286/454 (62%), Gaps = 35/454 (7%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDV--LGLAQTGSGK 110
S + S F+ LGLA+ V TC++LG +RPTPVQ IP +L DV L LA TGSGK
Sbjct: 1 SASVPSWANFSELGLADPLVTTCRQLGFKRPTPVQRVIIPYLLRHDDVHLLTLAATGSGK 60
Query: 111 TAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS-GLHLRCEVVVGGMDLL 169
TAAF LPILHRLA DPYG+ A+++TPTRELA Q+ +Q ALGS +++ +VVGG+D
Sbjct: 61 TAAFVLPILHRLAPDPYGIFAVILTPTRELAKQIHQQVLALGSSAYNVQSALVVGGLDAT 120
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL--DVGFEEEL- 226
Q+ L RPH +ATPGR+ LL P PP+ +++VLDEADR+L GFE ++
Sbjct: 121 RQSLDLDRRPHFCVATPGRLAELLR-GPR-PPMLKHVRYMVLDEADRLLAPGSGFERDIS 178
Query: 227 RVVFQCLP----------------KNRQTLLFSATMTSDLQTLLELSANKAYF-----YE 265
++ C + QTLLFSATMT L+++ E++ +
Sbjct: 179 ELLLHCTTSPTLAAVDGATGRERRQTCQTLLFSATMTRTLESVEEMAGAGLGRLPLKKFV 238
Query: 266 AYEGFKTVETL-KQQYIFIPKNVKDVYLMHVLSKMEDMG----IRSAIIFVSTCRSCHLL 320
+EG T E K++Y+F+P V+D YL+ + ++ G RSAIIFVSTC +
Sbjct: 239 IHEGLGTNEPRSKKKYVFMPSRVRDAYLLTAIRELMANGGPTKARSAIIFVSTCERAAFV 298
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
S +L ++ + VALHS SQ++RL++L +FKS Q +L+ATDVASRGLDIP+VDLVLN +
Sbjct: 299 SGILAQVGVDNVALHSLLSQNRRLASLAKFKSQQVRVLVATDVASRGLDIPSVDLVLNSE 358
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLS 439
+PR YVHRVGRTARAGR G A+SFV++ DV L+H E V G+ LE+ + ++ +
Sbjct: 359 LPRNAISYVHRVGRTARAGRRGRAISFVSEADVALVHAAEKVSGRVLEKCGDVTDEMAIK 418
Query: 440 DITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
+ V KA R+ +KL D GF+E ++ K++K++
Sbjct: 419 LLGPVAKAARLTKIKLNDIGFDELVQKFKERKVR 452
>gi|158514834|sp|A3LS22.3|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 484
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 185/442 (41%), Positives = 260/442 (58%), Gaps = 12/442 (2%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTH 89
E +PES +E NPD + TF+ L L ++ +++ +PTP+Q+
Sbjct: 47 ESKPESSQKSKNIVE--VNPDDEVKFS----TFSELKLVPELLEAIQQMKFSKPTPIQSE 100
Query: 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149
IP LEGKD++GLAQTGSGKTAAFA+PIL L E LV+ P RELAYQ+ E F
Sbjct: 101 AIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKETFD 160
Query: 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209
ALGS + +R +VGGMD++ QA+ LM +PH++IATPGRI LE K+
Sbjct: 161 ALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFS--LKMLKYF 218
Query: 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG 269
V+DEAD++LD+ F L + + +P R T LFSATMT+ ++ L S +
Sbjct: 219 VMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSK 278
Query: 270 FKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ 329
++T + L Q + + K+ YL+H+L+ E +G +S IIF T S+L L
Sbjct: 279 YQTADNLIQSMMLVSDGYKNTYLIHLLN--EFVG-KSIIIFARTRAHTQRTSILCRILGF 335
Query: 330 EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYV 389
AV LH +Q+QRL +L++FKSG A IL+ATDVA+RGLDIP+VD+V+NYDIP + YV
Sbjct: 336 SAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYV 395
Query: 390 HRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR 449
HRVGRTARAGR G ++S VTQ D+++ IE + K+L + + +L D V+ R
Sbjct: 396 HRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKAML-DALHVHVDRA 454
Query: 450 VATMKLMDDGFEEKAKERKKQK 471
A F EK + ++ K
Sbjct: 455 YAEAIRQTKEFHEKTRRGRRGK 476
>gi|403214400|emb|CCK68901.1| hypothetical protein KNAG_0B04660 [Kazachstania naganishii CBS
8797]
Length = 494
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 261/420 (62%), Gaps = 7/420 (1%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
L L ++ CK L +PTP+Q+ IP L+GKD++GLAQTGSGKTAAFA+PIL+ L
Sbjct: 79 LNLVPELLEACKNLNYSKPTPIQSRSIPPALKGKDIIGLAQTGSGKTAAFAIPILNSLWH 138
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
D A +++PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM +PH++I
Sbjct: 139 DQQPYYACILSPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHIIIG 198
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFS 243
TPGR+ LE K+LV+DEADR+LD+ F L + + +P + R T LFS
Sbjct: 199 TPGRLMDHLENTRGFS--LRNLKYLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYLFS 256
Query: 244 ATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMG 303
ATMTS + L S ++TV+TL Q + +P VKD YL+++L+ E +G
Sbjct: 257 ATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLVQTLMVVPGGVKDTYLVYLLN--EFIG 314
Query: 304 IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363
+S IIF T + +S L L A ALH +Q+QR AL FK+G+ +IL+ATDV
Sbjct: 315 -KSMIIFTRTKANAERISGLANLLQFSATALHGDLNQNQRTGALDLFKAGRRSILVATDV 373
Query: 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVV 423
A+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI IE V+
Sbjct: 374 AARGLDIPSVDVVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 433
Query: 424 GKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKK 483
GK+L + + VL+ V KA +K M +EK K + +M+ + GS K+
Sbjct: 434 GKKLPKENVDKDIVLALRDSVDKANG-EVVKEMSRRNKEKQARGKGRHGRMMLKDGSDKE 492
>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660562|sp|Q6CT85.1|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
Length = 487
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 181/443 (40%), Positives = 271/443 (61%), Gaps = 8/443 (1%)
Query: 30 EPEPESKN-AKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
EP P ++ A++ + +N P + +F L L ++ CK L +PTP+Q+
Sbjct: 37 EPSPSDEDSAQSNSKDSNSNEQPEESEE-IFESFTELDLVPELIEACKNLNYNKPTPIQS 95
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
IP L+G D++GLAQTGSGKTAAFA+PIL++L D A ++ PTRELA Q+ E F
Sbjct: 96 KAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETF 155
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208
+LGS + +R +VGGM ++ QA+ LM +PH++IATPGR+ LE + K+
Sbjct: 156 DSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFN--LRKLKY 213
Query: 209 LVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267
LV+DEADR+LD+ F L + +P + R T LFSATMTS + L S
Sbjct: 214 LVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVS 273
Query: 268 EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL 327
++TV+TL Q + +P +K+ +L+++L+ E +G +S I+F T + +S L L
Sbjct: 274 NKYQTVDTLVQTLMVVPGGLKNTFLIYLLN--EFIG-KSTIVFTRTKANAERISNLCNLL 330
Query: 328 DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387
+ A ALH +Q+QR AL FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP +
Sbjct: 331 EFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 390
Query: 388 YVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKA 447
Y+HRVGRTARAGR G ++S V+Q D++LI IE V+GK+L + + +L+ V KA
Sbjct: 391 YIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKA 450
Query: 448 RRVATMKLMDDGFEEKAKERKKQ 470
M+L E++A+ + ++
Sbjct: 451 NGEVVMELNRRNKEKQARGKGRR 473
>gi|413934954|gb|AFW69505.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 432
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 178/397 (44%), Positives = 243/397 (61%), Gaps = 39/397 (9%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL- 119
TFA LG+ V+ C +G + PT +Q IP L+GKD++ LAQTGSGKT AFALPIL
Sbjct: 25 TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84
Query: 120 ----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+R AE + A V++PTRELA Q+AEQF+ALGS + LRC V+VGG+D + Q S+
Sbjct: 85 ELLSNRQAEQSF--FACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSI 142
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPH+V VLDEAD++L+V FE+ L + +PK
Sbjct: 143 GKRPHIV---------------------------VLDEADKLLNVEFEKSLDDILSEMPK 175
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+R+T LFSATMT + L E + TV++LKQ++ F+P + KD YL+HV
Sbjct: 176 DRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV 235
Query: 296 LS-KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ ++E M +IFV TC S LL+L+L L +A+++ SQ +RL AL+RFK+
Sbjct: 236 LNERLESM----IMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKD 291
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAGR G AVS V Q +
Sbjct: 292 CNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQ 351
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IE ++GK++++ + EVL + A+R+A
Sbjct: 352 WFVLIEQLLGKKIDQCKVDRDEVLILKGPISDAKRIA 388
>gi|261201117|ref|XP_002626959.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
gi|239594031|gb|EEQ76612.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
gi|239607095|gb|EEQ84082.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ER-3]
Length = 553
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 183/435 (42%), Positives = 267/435 (61%), Gaps = 16/435 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+D + +FA LGLA W V + + ++RPT +Q CIP+I++G+D +G ++TGSGKT AFA
Sbjct: 117 SDGSSSFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFA 176
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
PIL + AEDP+GV A+++TPTRELA Q+ EQ KA+ + L+ ++ GG ++ QA +L
Sbjct: 177 APILQKWAEDPFGVFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIAL 236
Query: 176 MNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
RPH+VIATPGR+ + D +RT+ +VLDEADR+L G L V CL
Sbjct: 237 SQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLS 296
Query: 235 K-----NRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTV-ETLKQQYIFI 283
+RQTLLF+AT+T +++ L + ANK + + E T+ TLKQ Y+ +
Sbjct: 297 ALPPSTSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQV 356
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P ++ +L H L E + +IIF + ++ LL +L L +LHS QS+R
Sbjct: 357 PLTHREAFL-HTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSER 415
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVA+RGLDIP+V LV+N+D+PR P DYVHRVGRTARAGR G
Sbjct: 416 TANLSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGE 475
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
AV+ V Q DV L+ IE VGK++ E++ + + + R + V K G E+
Sbjct: 476 AVTLVGQRDVQLVLAIEDRVGKKMIEWKEEGVSIEGRVVRGGIIKEVGEAKREAMGEVEE 535
Query: 464 AKE---RKKQKLKML 475
++ R+ +KLK +
Sbjct: 536 GRDVLGRRVRKLKKI 550
>gi|413934953|gb|AFW69504.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 434
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 182/409 (44%), Positives = 246/409 (60%), Gaps = 35/409 (8%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL- 119
TFA LG+ V+ C +G + PT +Q IP L+GKD++ LAQTGSGKT AFALPIL
Sbjct: 25 TFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQ 84
Query: 120 ----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+R AE + A V++PTRELA Q+AEQF+ALGS + LRC VV
Sbjct: 85 ELLSNRQAEQSF--FACVLSPTRELAIQIAEQFEALGSAIGLRCSVV------------- 129
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
TPGR+ L E + K+LVLDEAD++L+V FE+ L + +PK
Sbjct: 130 --------GTPGRLLDHLTETKGFS--LKKIKYLVLDEADKLLNVEFEKSLDDILSEMPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+R+T LFSATMT + L E + TV++LKQ++ F+P + KD YL+HV
Sbjct: 180 DRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV 239
Query: 296 LS-KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ ++E M +IFV TC S LL+L+L L +A+++ SQ +RL AL+RFK+
Sbjct: 240 LNERLESM----IMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKD 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAGR G AVS V Q +
Sbjct: 296 CNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQ 355
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++GK++++ + EVL + A+R+A KL D G +K
Sbjct: 356 WFVLIEQLLGKKIDQCKVDRDEVLILKGPISDAKRIALTKLKDSGGHKK 404
>gi|67537466|ref|XP_662507.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
gi|74657196|sp|Q5B3H7.1|DBP8_EMENI RecName: Full=ATP-dependent RNA helicase dbp8
gi|40741791|gb|EAA60981.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
gi|259482230|tpe|CBF76513.1| TPA: ATP-dependent RNA helicase dbp8 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B3H7] [Aspergillus
nidulans FGSC A4]
Length = 525
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 179/429 (41%), Positives = 264/429 (61%), Gaps = 20/429 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L +A W V + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AF++PIL
Sbjct: 96 SFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQ 155
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP+G+ A+++TPTRELA Q+ EQ KA+ + ++ ++ GG D+ +QA L RPH
Sbjct: 156 KWAEDPFGIFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPH 215
Query: 181 VVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-----P 234
VV+ATPGR+ + D R + +VLDEADR+L G L V CL P
Sbjct: 216 VVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGP 275
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKA----YFYE-AYEGFKTVE-TLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + + E + E TV TL+ Y+ +P +
Sbjct: 276 SQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPLTHR 335
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL E +SAI+F +T +S LL LL L +LHS QS+R S L
Sbjct: 336 EAFL-HVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLA 394
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A +L+ATDVASRGLDIP+V LV+N+++PR P DYVHRVGRTARAGR G AV+ V
Sbjct: 395 RFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLV 454
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR------VYKARRVATMKLMDDGFEE 462
Q DV L+ IE +G+++ E+E + + + + + V A+R A +++ D+G +
Sbjct: 455 GQRDVQLVLAIEERIGRKMVEYEEEGVNLEARVAKGSLLKEVGAAKREAMVEI-DEGRDV 513
Query: 463 KAKERKKQK 471
++R K K
Sbjct: 514 LGRKRNKLK 522
>gi|407849369|gb|EKG04131.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 506
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 258/426 (60%), Gaps = 33/426 (7%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ +W + C + ++ PTP+Q CIP IL GK V+G A TGSGKTAAFALP+L
Sbjct: 4 FEQLGIHQWLSKQCAYMALQHPTPIQKLCIPAILAGKCVVGGAATGSGKTAAFALPVLQI 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
LAED YGV ALV+TP+RELAYQ+ +QF ALG+ LH+R +++GG+ Q +L RPHV
Sbjct: 64 LAEDLYGVFALVLTPSRELAYQIVDQFVALGAPLHIRTAIIIGGLPHEQQLDALKARPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---KNRQ 238
V+ATPGR+K +LE+ P+ F +FLVLDEADR+ E ++ V + LP R+
Sbjct: 124 VVATPGRLKFILEKFPEARKAFLHLRFLVLDEADRLTSDDIETDVEEVVRLLPPARPERR 183
Query: 239 TLLFSATMTSDLQTL-----------------LELSANKAYFYEA------YEGFKTVET 275
LLF+AT+ L + LE+ A A E + ++
Sbjct: 184 VLLFTATLEQRLTRVEEGGWLLRLGITPVAQHLEVFATNTVTAVADDNGAITESYAVADS 243
Query: 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGIR-SAIIFVSTCRSCHLLSLLLEELDQEAVAL 334
LKQ+Y+FIP VK YL+ + + G + S I+F ++C C ++ L L+ L +L
Sbjct: 244 LKQRYLFIPNMVKLAYLV---ASIRAAGTKQSTIVFTNSCMRCEVVRLTLQLLGFPVCSL 300
Query: 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGR 394
+S SQ R+ L FK G A IL+ATD+ASRGLDIP V LVL+YD+P+ Y+HRVGR
Sbjct: 301 NSVISQKHRVDNLATFKLGIARILVATDIASRGLDIPAVGLVLHYDVPKQVSTYLHRVGR 360
Query: 395 TARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK---EQEVLSDITRVYKARRVA 451
TARAGR GL+V+FVT+ DV+L+ +E + + ++ K E+EVL + V A+ A
Sbjct: 361 TARAGREGLSVAFVTEYDVNLVRRLERKMDCTMTLWKAKGVNEKEVLKLLDEVSAAKVQA 420
Query: 452 TMKLMD 457
+++ D
Sbjct: 421 KIQVED 426
>gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 433
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/384 (42%), Positives = 233/384 (60%), Gaps = 8/384 (2%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ S +T TF LG+ + C+ +G + PTP+Q IP L G+DV+GLA TGSG
Sbjct: 33 ETQSNEASTTTTFQSLGVCPELCKACQSMGWQAPTPIQMAAIPHALNGRDVIGLAVTGSG 92
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KT AF +P+LH L ED + +V+ P+REL Q+AEQF+AL S + L+ V++GG+D++
Sbjct: 93 KTGAFTIPVLHHLLEDVQRIYCVVLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMV 152
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA +L RPHV++A+PGR+ +E S K LV+DEADR+L F+EEL +
Sbjct: 153 HQASALAKRPHVIVASPGRLADHVENTKGFS--LSTVKKLVIDEADRLLSQDFDEELDKI 210
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+P RQT LFSATMT L L +++ + + + T E L Q+++ +P+ K
Sbjct: 211 IHAMPTERQTFLFSATMTKKLSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKYKY 270
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEA---VALHSFKSQSQRLSA 346
YL +L R+AI+F TC + L+ L V LH +Q+ R A
Sbjct: 271 TYLAALLWY---YATRTAIVFCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRA 327
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L FK+G IL+AT+V RGLD+P V+LV+N+DIP +DY+HRVGRTARAGR GLA++
Sbjct: 328 LQIFKTGSVNILVATEVGGRGLDLPMVELVINFDIPECSKDYIHRVGRTARAGRSGLALT 387
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEF 430
VTQ DV+L IE + K+LEEF
Sbjct: 388 VVTQYDVELFQRIELALNKKLEEF 411
>gi|156064101|ref|XP_001597972.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980]
gi|160380631|sp|A7E436.1|DBP8_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp8
gi|154690920|gb|EDN90658.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 540
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 195/485 (40%), Positives = 277/485 (57%), Gaps = 29/485 (5%)
Query: 4 QILLDRNFPLFAKPKSKTRSKPEPQPEP-EPESKNAKTTQLEKFTNPDPNSTTTDSTVTF 62
Q+L D + PL A +R K + Q EP++ N TD+ TF
Sbjct: 65 QVLEDGDIPLIATTSVPSRVKAKSQNNLLEPKNFNNGAVL-----------APTDAQTTF 113
Query: 63 AGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL 122
A L + W V + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL +
Sbjct: 114 AALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKW 173
Query: 123 AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVV 182
AEDP+G+ ALV+TPTRELA Q+ EQFKA+ S L+ ++ GG D+ QA +L RPHVV
Sbjct: 174 AEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHVV 233
Query: 183 IATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCL-----PK 235
IATPGR+ + D R + +VLDEADR+L G L V +CL P
Sbjct: 234 IATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSLLPPPS 293
Query: 236 NRQTLLFSATMTSDLQTLLE----LSANKAYFYEA-YEGFKTVETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T +++ L + L + E + +L Q ++ +P ++
Sbjct: 294 ERQTLLFTATVTPEVRALKDMPRTLGKPPVFVCEVDTQALAIPSSLNQMHLQVPVTHREH 353
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL H+ E +S +IF + + L+ LL L+ ALHS Q QR+ L RF
Sbjct: 354 YL-HMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLEHRVTALHSKLPQRQRIDNLGRF 412
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAGR G AV+FV Q
Sbjct: 413 RASAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVTFVGQ 472
Query: 411 NDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
DV LI IE VG+Q+E + + E V+ + ++ ++ M +++G E K
Sbjct: 473 RDVQLILAIEKRVGRQMEAWTEEGVNLETRVIRESLKLVGEKKREAMLEIEEGREVGGKR 532
Query: 467 RKKQK 471
++ K
Sbjct: 533 KRGMK 537
>gi|71405341|ref|XP_805297.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70868651|gb|EAN83446.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 507
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 258/426 (60%), Gaps = 33/426 (7%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ +W + C + ++ PTP+Q CIP IL GK V+G A TGSGKTAAFALP+L
Sbjct: 4 FEQLGIHQWLSKQCAYMALQHPTPIQKLCIPAILAGKCVVGGAATGSGKTAAFALPVLQI 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
LAED YGV ALV+TP+RELAYQ+ +QF ALG+ LH+R +++GG+ Q +L RPHV
Sbjct: 64 LAEDLYGVFALVLTPSRELAYQIVDQFVALGAPLHIRTAIIIGGLPHEQQLDALKARPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---KNRQ 238
V+ATPGR+K +LE+ P+ F +FLVLDEADR+ E ++ V + LP R+
Sbjct: 124 VVATPGRLKFMLEKFPEARKAFLHLRFLVLDEADRLTSDDIETDVEEVVRLLPPARPERR 183
Query: 239 TLLFSATMTSDLQTL-----------------LELSANKAYFYEA------YEGFKTVET 275
LLF+AT+ L + LE+ A A E + ++
Sbjct: 184 VLLFTATLEQRLTRVEEGGWLVRLGITPAAQNLEVFATNTVTTVADDNGATTESYAVADS 243
Query: 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSLLLEELDQEAVAL 334
LKQ+Y+FIP VK YL+ + + G +S I+F ++C C ++ L L+ L +L
Sbjct: 244 LKQRYLFIPNMVKLAYLV---ASIRAAGTEQSTIVFTNSCMRCEVVRLTLQLLGFPVCSL 300
Query: 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGR 394
+S SQ R+ L FK G A IL+ATD+ASRGLDIP V LVL+YD+P+ Y+HRVGR
Sbjct: 301 NSVISQKHRVDNLATFKLGIARILVATDIASRGLDIPAVGLVLHYDLPKQVSTYLHRVGR 360
Query: 395 TARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK---EQEVLSDITRVYKARRVA 451
TARAGR GL+V+FVT+ DV+L+ +E + + ++ K E+EVL + V A+ A
Sbjct: 361 TARAGREGLSVAFVTEYDVNLVRRLERKMDCTMTLWKAKGVNEKEVLKLLDEVSAAKVQA 420
Query: 452 TMKLMD 457
+++ D
Sbjct: 421 KIQVED 426
>gi|225560188|gb|EEH08470.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus G186AR]
Length = 539
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/456 (40%), Positives = 272/456 (59%), Gaps = 17/456 (3%)
Query: 34 ESKNAKTTQLEKFTNPDPNSTTTDSTVT-FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP 92
E+ TT + T D + T S ++ FA LGLA W V + + ++RPT +Q CIP
Sbjct: 82 ETNGNATTNADPITAQDAAAVTRPSDISSFASLGLAPWLVGSLSTMAIKRPTAIQKACIP 141
Query: 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152
+IL+G+D +G ++TGSGKT AFA PIL + AEDP+G+ A+++TPTRELA Q+ EQ KA+
Sbjct: 142 EILKGRDCIGGSRTGSGKTVAFAAPILQKWAEDPFGIFAVILTPTRELALQIFEQIKAIS 201
Query: 153 SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVL 211
+ L+ ++ GG ++ QA +L RPH+VIATPGR+ + D +RT+ +V
Sbjct: 202 APQSLKPILITGGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVF 261
Query: 212 DEADRVLDVGFEEELRVVFQCLPK-----NRQTLLFSATMTSDLQTLLELS--ANKAYFY 264
DEADR+L G L V CL RQTLLF+AT+T +++ L + ANK +
Sbjct: 262 DEADRLLASGPGSMLPDVETCLSALPPSTARQTLLFTATVTPEVRALKSMPRPANKLPIF 321
Query: 265 E---AYEGFKTVE-TLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLL 320
+ E ++ TLKQ Y+ +P ++ +L H L E + AIIF + ++ L+
Sbjct: 322 VTEVSTENKASIPPTLKQTYLQVPLTHREAFL-HTLISTEANSQKPAIIFCNRTKTADLV 380
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
+L L +LHS QS+R + L RF++ A IL+ATDVA+RGLDIP+V LV+N+D
Sbjct: 381 ERMLRRLGHRVTSLHSLLPQSERTANLSRFRASAARILVATDVAARGLDIPSVSLVINFD 440
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSD 440
+PR P DYVHRVGRTARAGR G AV+ V Q DV L+ IE VG+++ E++ + +
Sbjct: 441 VPRNPDDYVHRVGRTARAGREGEAVTLVGQRDVQLVLAIEDRVGRKMVEWKEEGVSIEGR 500
Query: 441 ITRVYKARRVATMKLMDDGFEEKAKE---RKKQKLK 473
+ R + V K G E+ ++ R+ +KLK
Sbjct: 501 VVRGGILKEVGEAKREAVGEVEEGRDVLGRRVRKLK 536
>gi|258563984|ref|XP_002582737.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908244|gb|EEP82645.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 538
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 265/428 (61%), Gaps = 16/428 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGLA W V + + +RRPT +Q CIP+IL+G+D +G ++TGSGKT AFA PILH
Sbjct: 109 SFTSLGLAPWLVGSLSAMAIRRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILH 168
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
R +EDP+G+ A+V+TPTRELA Q+ EQFKA+ + L+ ++ GG ++ QA +L RPH
Sbjct: 169 RWSEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPH 228
Query: 181 VVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK---- 235
VVIATPGR+ ++ D SR + +V DEADR+L G + V CL
Sbjct: 229 VVIATPGRLADHIKTSGEDTIFGLSRVRMVVFDEADRLLASGPGSMVPDVETCLSALPPS 288
Query: 236 -NRQTLLFSATMTSDLQTLLELSANK----AYFYE-AYEGFKTVE-TLKQQYIFIPKNVK 288
+RQTLLF+AT+T +++ L + K + E + E T+ TLKQ Y+ +P +
Sbjct: 289 TSRQTLLFTATLTPEVRALKSMPRPKDRPPVFITEISTENNATIPPTLKQCYLQVPMTHR 348
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL E+ G + AIIF + ++ LL LL L +LHS QS+R S L
Sbjct: 349 EAFL-HVLLSTEENGSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLA 407
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A +L+ATDVA+RGLDIP+V LV+N+D+PR P DY+HRVGRTARAGR G AV+ V
Sbjct: 408 RFRASAARLLVATDVAARGLDIPSVSLVVNFDVPRNPDDYIHRVGRTARAGREGEAVTLV 467
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE-- 466
Q DV L+ IEA VG+Q+ +E + + I R + V K G E+ ++
Sbjct: 468 GQRDVQLVLAIEARVGRQMVVWEEEGVSIEGRIVRGNVLKEVGGAKREAVGEIEEGRDVL 527
Query: 467 -RKKQKLK 473
R+ +KLK
Sbjct: 528 GRRMRKLK 535
>gi|256070762|ref|XP_002571711.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|350646384|emb|CCD58943.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
Length = 453
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 189/460 (41%), Positives = 272/460 (59%), Gaps = 44/460 (9%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LG+ V+ ++ G+ +PT VQ CIP ILEG DV+ A+TGSGKTAAF +PIL
Sbjct: 1 MTFEELGVCPEIVELLRDKGINKPTEVQEGCIPVILEGNDVVACAKTGSGKTAAFLIPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL-----RCEVVV--GGMDLLTQA 172
L + + AL+ITPTRELA+Q+ EQ +GL+L C V+V GG ++ Q+
Sbjct: 61 QSLMTELKPLYALIITPTRELAHQIGEQ----AAGLNLIQGEPLCNVLVITGGRSIVHQS 116
Query: 173 KSLMNRPHVVIATPGRIKVLL-------EEDPDIPP--VFSRTKFLVLDEADRVLDVGFE 223
L PH+V++TPGR+ LL E D + P SRTK +VLDEADR+L+ F
Sbjct: 117 IDLARSPHIVVSTPGRLADLLRTQTAAQEADTENKPEWTLSRTKVVVLDEADRLLEDNFG 176
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAY--------FYE-------AYE 268
E+L + + LPK RQTLLFSAT + +++ LE + + AY ++ +
Sbjct: 177 EDLNTILKALPKRRQTLLFSATFSGAVKSSLEAAKSVAYAENRRPPILWQPECMTTCSSA 236
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLLSLLLEEL 327
G TVETL Q YI + K+ +L+H + + S I IF + C+ CHL+ L++ L
Sbjct: 237 GAVTVETLSQYYILMRPEHKEAFLVHTVDQFLTENPHSLIMIFTNKCKWCHLIGLMMTSL 296
Query: 328 DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387
+ LHS +Q R+S+L F+S Q +L+ATD+ASRGLD PTVD+V+N+++P P+D
Sbjct: 297 GIKTTLLHSSMTQKNRISSLTLFRSSQIRVLIATDLASRGLDFPTVDIVINHNVPIRPKD 356
Query: 388 YVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKA 447
YVHRVGRTARAG+ GLA++ +V + I+ + K+L+ F+ E++V I V A
Sbjct: 357 YVHRVGRTARAGKAGLALTLCDLFEVKRLKAIQTFINKELKTFDVNEKKVAQIIAEVSIA 416
Query: 448 RRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEK 487
RR A KL + F+EK + K + L +K RS K
Sbjct: 417 RRDAERKLDEIRFDEKREINKAKNL--------MKARSSK 448
>gi|345570196|gb|EGX53021.1| hypothetical protein AOL_s00007g357 [Arthrobotrys oligospora ATCC
24927]
Length = 523
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 171/388 (44%), Positives = 245/388 (63%), Gaps = 5/388 (1%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
L + + +T + L +PTP+Q IP L GKD++GLA+TGSGKTAAFALPIL L
Sbjct: 107 LEIIDQLCETLEILKFHKPTPIQQASIPLALAGKDLIGLAETGSGKTAAFALPILQALYH 166
Query: 125 DPYGVL-ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVI 183
P+ L A ++ PTRELA+Q++EQ +A+G L ++ V+VGGMD++ QA +L RPH+++
Sbjct: 167 SPHSTLFACILAPTRELAFQISEQTEAIGGSLGVKTCVIVGGMDMMPQAIALSKRPHIIV 226
Query: 184 ATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243
ATPGR+ LE K+LV+DEADR+LD+ F + + + LP R T LFS
Sbjct: 227 ATPGRLLDHLENTKGFS--LRSIKYLVMDEADRLLDLDFGPIIEKILKVLPPQRNTYLFS 284
Query: 244 ATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMG 303
ATMT ++ L +S ++TV++L Q ++ IP+ KD YL+++++ E
Sbjct: 285 ATMTDKVERLQRMSLTNPVRVAVSSKYQTVKSLLQYFMLIPQKDKDTYLVYLVA--EKFA 342
Query: 304 IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363
++ IIF T +S+LL L A+ LH SQ+ RL AL++FK+G IL+ATDV
Sbjct: 343 GKTMIIFTRTIMDTQRISVLLRLLGCSAIPLHGQLSQTGRLGALNKFKAGARNILVATDV 402
Query: 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVV 423
A+RGLDIPTVD V+NYDI + Y+HRVGRTARAGR G+ V+ VTQ D++ IE +
Sbjct: 403 AARGLDIPTVDYVINYDIAGDSKTYIHRVGRTARAGRSGVCVNLVTQYDIEEFTRIEKAL 462
Query: 424 GKQLEEFECKEQEVLSDITRVYKARRVA 451
GK+L+ E ++ EV V +A+R A
Sbjct: 463 GKKLDALEVEKGEVSLLAESVGEAQRQA 490
>gi|400602623|gb|EJP70225.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 545
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 184/437 (42%), Positives = 262/437 (59%), Gaps = 18/437 (4%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TFA LG+ W VQ+ + +RRPT +Q C+P+IL G+D +G ++TGSGKT AFA
Sbjct: 110 TDPNTTFAALGVRPWLVQSLANMAIRRPTGIQKGCVPEILRGRDCIGGSRTGSGKTVAFA 169
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+P+L + AEDP V +V+TPTRELA Q+ EQF+A+ + L+ ++ GG D+ QA +L
Sbjct: 170 VPMLQKWAEDPSAVFGVVLTPTRELALQIYEQFRAVAAPQSLKVVLITGGADMRPQAIAL 229
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCL 233
RPH++IATPGR+ + D R +F+VLDEADR+L G L V +CL
Sbjct: 230 KQRPHIIIATPGRLADHVRTSGEDTVCGLRRVRFIVLDEADRLLHAAGPGSMLPDVEECL 289
Query: 234 -----PKNRQTLLFSATMTSDLQTLLEL----SANKAYFYEA-YEGFKTVETLKQQYIFI 283
P RQTLLF+ATMT +++ L + + E + TL Q ++ +
Sbjct: 290 SVLPPPTERQTLLFTATMTPEVRALEAMPRKPGKQPVFVCEVDTQTLAVPATLSQYHLQV 349
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P K+ YL HVL E ++ I+F + + L +L LD +LHS Q QR
Sbjct: 350 PVTHKEHYL-HVLLLTEANVGKTVILFCNRTATADFLHHMLRLLDHRVTSLHSKLPQRQR 408
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAGR G
Sbjct: 409 IDNLARFRASAARILIATDVAARGLDIPEVSLVINYDVPRDPDDYIHRVGRTARAGRAGE 468
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITR-VYKARRVATMKLMDD 458
AV+FV Q DV+L+ IE VG+ +E + + E VL D + V + +R A +++ ++
Sbjct: 469 AVTFVGQRDVELVLAIEKRVGRDMEAWAEEGVNLETRVLRDALKTVSEKKREALLEVEEN 528
Query: 459 GFEEKAKERKKQKLKML 475
++R KQKL+ +
Sbjct: 529 KEVGGKRKRTKQKLRAV 545
>gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 470
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/436 (39%), Positives = 259/436 (59%), Gaps = 25/436 (5%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TF LG+ + CKELG +RPT +Q IP L GKD++GLA+TGSGKTAAF +PI
Sbjct: 40 TPTFEDLGVCVELCRACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPI 99
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L +L E P + +L++ PTREL+ Q+ EQ +LGS + L +++GG+D+++QA L +
Sbjct: 100 LQKLLEKPQRLFSLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQLSKK 159
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ +PGRI L+ K+LVLDEAD++L F++ L + LPK++
Sbjct: 160 PHIIVGSPGRIADHLQNTKGFS--LETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKV 217
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T L+SATMTS + L +++ K + T E L Q+Y+ IP K YL +L K
Sbjct: 218 TYLYSATMTSKITKLQKVTLMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACILWK 277
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA--- 355
I ++F +TC + ++L L+ L ++V LH SQ QRL++L+ FK+G+
Sbjct: 278 YSTSTI---MVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPI 334
Query: 356 ----------TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
IL+ TDV SRGLDIP VDLV+N+D+P +DY+HRVGRTARAG+ G+++
Sbjct: 335 PQPHIISGLFNILVVTDVGSRGLDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISL 394
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFE--- 461
+ +TQ D++ E + K+LEE+ + E+EV + + R A M + F+
Sbjct: 395 TLITQYDIESFQRTEYALNKKLEEYKDISEEEVYNKYDECCNSLRNAEMD-YKNKFQLIK 453
Query: 462 --EKAKERKKQKLKML 475
+K K+ K K K+L
Sbjct: 454 TNKKNKQYNKSKFKLL 469
>gi|342885803|gb|EGU85755.1| hypothetical protein FOXB_03603 [Fusarium oxysporum Fo5176]
Length = 539
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 186/436 (42%), Positives = 263/436 (60%), Gaps = 18/436 (4%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TF+ L + W VQ+ + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA
Sbjct: 104 TDPNTTFSSLNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFA 163
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL + +EDP + A+V+TPTRELA Q+ EQFKA+ S L+ +V GG D+ TQA +
Sbjct: 164 VPILQKWSEDPTAIFAIVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRTQAIEI 223
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL 233
RPHV+IATPGR+ + D R +++VLDEADR+L+ G L V +CL
Sbjct: 224 GKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRLLNANGPGSMLPDVEECL 283
Query: 234 -----PKNRQTLLFSATMTSDLQTL--LELSANKAYFYEAYEGFKTVE---TLKQQYIFI 283
RQTLLF+AT+T +++ L + + K + +T+ TLKQ YI
Sbjct: 284 SVLPPATERQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQTLAIPTTLKQMYIKT 343
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P K+ YL HV E ++ I+F + + L LL L+ +LHS Q QR
Sbjct: 344 PVTHKEHYL-HVFLLTEANVDKTVILFCNRTSTADYLHHLLRMLNHRVTSLHSKLPQRQR 402
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAGR G
Sbjct: 403 IDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGE 462
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKLMDDG 459
AVSFV Q DV+L IE VG+ +E +E + E V+ D ++ ++ + +++G
Sbjct: 463 AVSFVGQRDVELALTIEKRVGRDMESWEEEGVNLETRVVRDALKIVSEKKREALLEVEEG 522
Query: 460 FEEKAK-ERKKQKLKM 474
E K +R KQ L++
Sbjct: 523 REVGGKRKRTKQNLRV 538
>gi|312370822|gb|EFR19136.1| hypothetical protein AND_23001 [Anopheles darlingi]
Length = 485
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 244/383 (63%), Gaps = 5/383 (1%)
Query: 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149
CIP+IL+G+D +G A+TGSGKT AFALPIL +L+E+P ALV+TPT ELA+Q+AEQF
Sbjct: 4 CIPRILQGQDCIGAAKTGSGKTFAFALPILQKLSEEPTANFALVLTPTHELAHQIAEQFI 63
Query: 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209
G ++ R VV GG D L +A+ L +RPH+++A PGR+ L F+ +FL
Sbjct: 64 VAGQPMNARVCVVTGGTDQLLEAQKLQSRPHIIVAMPGRLADHLNGCNTYS--FAALQFL 121
Query: 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYE 268
V+DEADRVL F+++LRV+ + LP RQ L FSATM L+T + A + +
Sbjct: 122 VVDEADRVLSGSFDDDLRVIDRFLPAKRQNLFFSATMKDFLKTSIVFPIAQDVFEWSEQS 181
Query: 269 GFKTVETLKQQYIFIPKNVKDVYLMHVLSKM-EDMGIRSAIIFVSTCRSCHLLSLLLEEL 327
TVETL Q+YI +D+ L L K E+ S +IF ++ + C +LS+ L +
Sbjct: 182 EVATVETLDQRYILCADYDRDMVLTEALRKFKEENEDASVMIFTNSKKDCQVLSMTLSSI 241
Query: 328 DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387
+ V LH F Q +R++AL+RFKS IL+ATDVASRGLDIP V LVLN+ +P+ P +
Sbjct: 242 GFDNVCLHGFMRQKERVAALNRFKSKHVRILIATDVASRGLDIPDVQLVLNHRLPKMPNE 301
Query: 388 YVHRVGRTARAGRGGLAVS-FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYK 446
Y+HRVGRTARAGR G+A+S F D++ + EIEA++ +L E + ++ V +V
Sbjct: 302 YIHRVGRTARAGRSGMAISIFRFPRDLEFLGEIEALINTKLTEHQIDQRLVERIFMQVSV 361
Query: 447 ARRVATMKLMDDGFEEKAKERKK 469
ARR A M L ++ F+E+ + ++
Sbjct: 362 ARREAEMSLNNEDFDERQQRYRR 384
>gi|310791524|gb|EFQ27051.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 550
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 193/439 (43%), Positives = 265/439 (60%), Gaps = 20/439 (4%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
S TD TF+ + + W VQ+ + ++RPT +Q CIP+IL+G+D +G ++TGSGKT
Sbjct: 113 SAPTDPNTTFSAINVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTV 172
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AFA+PIL + AEDP + ALV+TPTRELA Q+ EQFKA+ S L+ +V GG D+ QA
Sbjct: 173 AFAVPILQKWAEDPTAIFALVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRPQA 232
Query: 173 KSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVF 230
+L RPHVVIATPGR+ + D R K++VLDEADR+LD G + V
Sbjct: 233 IALAQRPHVVIATPGRLADHIRTSGEDTICGLRRVKYVVLDEADRLLDATGPGSMIPDVE 292
Query: 231 QCL-----PKNRQTLLFSATMTSDLQTL----LELSANKAYFYEA-YEGFKTVETLKQQY 280
+CL RQTLLF+AT+T +++ L L+ + E + TL Q +
Sbjct: 293 ECLSVLPPSSQRQTLLFTATITPEVRALKDMPLKPGKQPVFVCEVDTQSLAIPATLSQMH 352
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
+ +P ++ YL L + D + +S IIF + + L LL LD +LHS
Sbjct: 353 LQVPVTHREHYLHTFL--LTDGNVEKSVIIFCNRTSTADYLHHLLRLLDHRVTSLHSGLP 410
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
Q QR+ L RF++ A IL+ATDVASRGLDIP V LV+NYDIPR P DY+HRVGRTARAG
Sbjct: 411 QRQRVDNLGRFRAAAARILVATDVASRGLDIPEVALVINYDIPRNPDDYIHRVGRTARAG 470
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKL 455
R G AV+FV Q DV+L+ IEA VG+Q+E ++ + E VL D +V ++ +
Sbjct: 471 RKGEAVTFVGQRDVELVLAIEARVGRQMEAWQEEGVNLETRVLRDSLKVVSEKKREALLE 530
Query: 456 MDDGFEEKAK-ERKKQKLK 473
+++G E K +R KQKL
Sbjct: 531 LEEGREVGGKRKRTKQKLN 549
>gi|240278937|gb|EER42443.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H143]
Length = 539
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 179/417 (42%), Positives = 256/417 (61%), Gaps = 16/417 (3%)
Query: 34 ESKNAKTTQLEKFTNPDPNSTTTDSTVT-FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP 92
E+ TT + T D + T S ++ FA LGLA W V + + ++RPT +Q CIP
Sbjct: 82 ETNGNATTNADPITAQDAAAATRPSDISSFASLGLAPWLVGSLSTMAIKRPTAIQKACIP 141
Query: 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152
+IL+G+D +G ++TGSGKT AFA PIL + AEDP+G+ A+++TPTRELA Q+ EQ KA+
Sbjct: 142 EILKGRDCIGGSRTGSGKTVAFAAPILQKWAEDPFGIFAVILTPTRELALQIFEQIKAIS 201
Query: 153 SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVL 211
+ L+ ++ GG ++ QA +L RPH+VIATPGR+ + D +RT+ +V
Sbjct: 202 APQSLKPILITGGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVF 261
Query: 212 DEADRVLDVGFEEELRVVFQCLPK-----NRQTLLFSATMTSDLQTLLELS--ANKAYFY 264
DEADR+L G L V CL RQTLLF+AT+T +++ L + ANK +
Sbjct: 262 DEADRLLASGPGSMLPDVETCLSALPPSTARQTLLFTATVTPEVRALKSMPRPANKLPIF 321
Query: 265 E---AYEGFKTVE-TLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLL 320
+ E ++ TLKQ Y+ +P ++ +L H L + AIIF + ++ L+
Sbjct: 322 VTEVSTENKASIPPTLKQTYLQVPLTHREAFL-HTLISTAANSQKPAIIFCNRTKTADLV 380
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
+L L +LHS QS+R + L RF++ A IL+ATDVA+RGLDIP+V LV+N+D
Sbjct: 381 ERMLRRLGHRVTSLHSLLPQSERTANLSRFRASAARILVATDVAARGLDIPSVSLVINFD 440
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437
+PR P DYVHRVGRTARAGR G AV+ V Q DV L+ IE VG+++ E+ KE+ V
Sbjct: 441 VPRNPDDYVHRVGRTARAGREGEAVTLVGQRDVQLVLAIEDRVGREMVEW--KEEGV 495
>gi|408399615|gb|EKJ78713.1| hypothetical protein FPSE_01081 [Fusarium pseudograminearum CS3096]
Length = 544
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 186/436 (42%), Positives = 265/436 (60%), Gaps = 18/436 (4%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TF+ L + W VQ+ + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA
Sbjct: 109 TDPNTTFSALNVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFA 168
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL + +EDP + A+V+TPTRELA Q+ EQFKA+ S L+ +V GG D+ TQA +
Sbjct: 169 VPILQKWSEDPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRTQAIEI 228
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL 233
RPHV+IATPGR+ + D R +++VLDEADR+L+ G L V +CL
Sbjct: 229 GKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRLLNATGPGSMLPDVEECL 288
Query: 234 -----PKNRQTLLFSATMTSDLQTL--LELSANKAYFYEAYEGFKTV---ETLKQQYIFI 283
RQTLLF+AT+T +++ L + + K + +T+ TLKQ YI +
Sbjct: 289 SVLPPATERQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQTLAIPATLKQMYIKV 348
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P K+ YL H E ++ I+F + + L LL L+ +LHS Q QR
Sbjct: 349 PVTHKEHYL-HTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQR 407
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAGR G
Sbjct: 408 IDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGE 467
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKLMDDG 459
AVSFV Q DV+L IE VG+ +E +E + E V+ D ++ ++ + +++G
Sbjct: 468 AVSFVGQRDVELALTIEKRVGRDMEAWEEEGVNLETRVVRDALKLVSEKKREALLEVEEG 527
Query: 460 FEEKAK-ERKKQKLKM 474
E K +R KQKL++
Sbjct: 528 REVGGKRKRTKQKLRV 543
>gi|325090197|gb|EGC43507.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H88]
Length = 539
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 180/417 (43%), Positives = 257/417 (61%), Gaps = 16/417 (3%)
Query: 34 ESKNAKTTQLEKFTNPDPNSTTTDSTVT-FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP 92
E+ TT + T D + T S ++ FA LGLA W V + + ++RPT +Q CIP
Sbjct: 82 ETNGNATTNADPITAQDAAAATRPSDISSFASLGLAPWLVGSLSTMAIKRPTAIQKACIP 141
Query: 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152
+IL+G+D +G ++TGSGKT AFA PIL + AEDP+G+ A+++TPTRELA Q+ EQ KA+
Sbjct: 142 EILKGRDCIGGSRTGSGKTVAFAAPILQKWAEDPFGIFAVILTPTRELALQIFEQIKAIS 201
Query: 153 SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVL 211
+ L+ ++ GG ++ QA +L RPH+VIATPGR+ + D +RT+ +V
Sbjct: 202 APQSLKPILITGGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVF 261
Query: 212 DEADRVLDVGFEEELRVVFQCL----PKN-RQTLLFSATMTSDLQTLLELS--ANKAYFY 264
DEADR+L G L V CL P RQTLLF+AT+T +++ L + ANK +
Sbjct: 262 DEADRLLASGPGSMLPDVETCLSTLPPSTARQTLLFTATVTPEVRALKSMPRPANKLPIF 321
Query: 265 E---AYEGFKTVE-TLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLL 320
+ E ++ TLKQ Y+ +P ++ +L H L + AIIF + ++ L+
Sbjct: 322 VTEVSTENKASIPPTLKQTYLQVPLTHREAFL-HTLISTAANSQKPAIIFCNRTKTADLV 380
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
+L L +LHS QS+R + L RF++ A IL+ATDVA+RGLDIP+V LV+N+D
Sbjct: 381 ERMLRRLGHRVTSLHSLLPQSERTANLSRFRASAARILVATDVAARGLDIPSVSLVINFD 440
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437
+PR P DYVHRVGRTARAGR G AV+ V Q DV L+ IE VG+++ E+ KE+ V
Sbjct: 441 VPRNPDDYVHRVGRTARAGREGEAVTLVGQRDVQLVLAIEDRVGREMVEW--KEEGV 495
>gi|189188460|ref|XP_001930569.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972175|gb|EDU39674.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 514
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 268/454 (59%), Gaps = 20/454 (4%)
Query: 25 PEPQP--EPEPESKNAKTTQLEKFTNPDPNSTT--TDSTVTFAGLGLAEWAVQTCKELGM 80
PEP+P P K Q ++ N S+T + ++F L +A W V + + +
Sbjct: 45 PEPKPILAAAPSISRVKAKQQDQPQNVTVTSSTPMVNQKLSFTSLNVAPWLVASLASMEI 104
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
+RPT +Q CIP+IL+GKD +G ++TG+GKT AF++PIL + +EDP G+ A+++TPTREL
Sbjct: 105 KRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVPILQKWSEDPSGIFAVIVTPTREL 164
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDI 199
A Q+ EQ KA+ + ++ ++ GG D +QA +L +RPHVVIATPGR+ + + D
Sbjct: 165 AIQIYEQVKAISAPQSMKPILITGGSDQRSQAIALASRPHVVIATPGRLAEHIRTSGEDT 224
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL----PK-NRQTLLFSATMTSDLQTLL 254
R KF+V DEADR+L G L + CL PK +RQTLLF+AT+T ++ L
Sbjct: 225 ICGLRRVKFVVFDEADRLLAPGKGSMLPDLETCLSVLPPKESRQTLLFTATVTPEVMALK 284
Query: 255 ELSANKA----YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAII 309
+ E E L+Q+Y+ P K+ YL HVL +S II
Sbjct: 285 HQPRAPGRLPIFVSEVDTEDLAIPPRLQQKYLQTPVTHKECYL-HVLLNTPVNSTKSVII 343
Query: 310 FVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369
F + ++ LL +L LD ALHS QS R+S L RF++ A IL+ATDVA+RGLD
Sbjct: 344 FCNRTKTATLLEYMLRLLDHRVTALHSGLKQSDRVSNLARFRAQAARILVATDVAARGLD 403
Query: 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEE 429
IP V LV+N+D+PR P DY+HRVGRTARAGR G +++F+ Q DVDL+ IE VGK+++E
Sbjct: 404 IPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTSITFIGQRDVDLVLAIETRVGKKMDE 463
Query: 430 FE----CKEQEVLSDITRVYKARRVATMKLMDDG 459
FE E VL D + ++ M +++G
Sbjct: 464 FEEEGVSVEGRVLRDALKPVTEKKREAMLSIEEG 497
>gi|330926544|ref|XP_003301506.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
gi|311323638|gb|EFQ90408.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
Length = 514
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 192/457 (42%), Positives = 268/457 (58%), Gaps = 24/457 (5%)
Query: 26 EPQPEPEPESKNAKTTQLEKFTNPDP--NSTTTDSTVT------FAGLGLAEWAVQTCKE 77
E PEP+P A T K + D N T ST T FA L +A W V +
Sbjct: 42 EAVPEPKPILAAAPTISRVKAKSQDQSQNVAITSSTPTVNHKLNFASLNVAPWLVASLAS 101
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
+ ++RPT +Q CIP+IL+GKD +G ++TG+GKT AF++PIL + +EDP G+ A+++TPT
Sbjct: 102 MEIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVPILQKWSEDPSGIFAVIVTPT 161
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEED 196
RELA Q+ EQ KA+ + ++ ++ GG D +QA +L +RPHVVIATPGR+ + +
Sbjct: 162 RELAIQIYEQVKAISAPQSMKPILITGGSDQRSQAIALASRPHVVIATPGRLAEHIRTSG 221
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL----PK-NRQTLLFSATMTSDLQ 251
D R KF+V DEADR+L G L + CL PK +RQTLLF+AT+T ++
Sbjct: 222 EDTICGLRRVKFVVFDEADRLLAPGKGSMLPDLETCLSVLPPKESRQTLLFTATVTPEVM 281
Query: 252 TLLELSANKA----YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRS 306
L + E E L+Q+Y+ P K+ YL HVL +S
Sbjct: 282 ALKHQPRAPGRLPIFVSEVDTEDLAIPPRLQQKYLQTPVTHKECYL-HVLLNTPVNSNKS 340
Query: 307 AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366
IIF + ++ LL +L LD ALHS Q+ R+S L RF++ A IL+ATDVA+R
Sbjct: 341 VIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQTDRVSNLARFRAQAARILVATDVAAR 400
Query: 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ 426
GLDIP V LV+N+D+PR P DY+HRVGRTARAGR G +++F+ Q DVDLI IE VGK+
Sbjct: 401 GLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTSITFIGQRDVDLILAIETRVGKK 460
Query: 427 LEEFE----CKEQEVLSDITRVYKARRVATMKLMDDG 459
++EFE E VL D + ++ M +++G
Sbjct: 461 MDEFEEEAVSVEGRVLRDALKPVTEKKREAMLSIEEG 497
>gi|429327439|gb|AFZ79199.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 501
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/408 (39%), Positives = 257/408 (62%), Gaps = 15/408 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ W + L ++ PT +Q C+P GK+++G AQTG+GKT F PIL
Sbjct: 87 TFKELGVPSWLIDIADSLHIKAPTKIQELCLPPAFAGKNIIGCAQTGTGKTICFCWPILV 146
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L +DPYGV ALV++ +RELAYQ+A+QF G+ +++ V VGG+D++ QA + +RPH
Sbjct: 147 ALDKDPYGVFALVLSSSRELAYQIADQFNIFGARMNIDVLVCVGGVDIVYQAIKMESRPH 206
Query: 181 VVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---KN 236
+VI TPGRI ++ + +I +FS K+LV DEAD++L F+ ++ + +CLP
Sbjct: 207 IVIGTPGRIADQVDIPERNISKIFSNVKYLVFDEADKLLHSSFQTPIQSILKCLPTTQSG 266
Query: 237 RQTLLFSATMTSDLQTL-LELSANKAYFYEAYEG------FKTVETLKQQYIFIPKNVKD 289
R T LFSAT+T+ ++ L S +K +F++ EG F + + +YIF+P++V
Sbjct: 267 RITYLFSATITNAIKALSSSFSDSKFHFFDVTEGKGQNSVFNEL-NIDHKYIFLPQHVHT 325
Query: 290 VYLMHVLSK--MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
YL+++L + ME ++ IIF +T + C +LSL LE+L + +HS Q +R + L
Sbjct: 326 TYLVYLLKEKLMESERVQ-GIIFTATKKRCQILSLALEQLKFKVTCIHSLMKQRKRNACL 384
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
+F+SG +L+ATD+ +RG+D+P+V V+N D+P+ DY+HR+GRT RAG GLA+SF
Sbjct: 385 AKFRSGTCNLLVATDLVARGIDVPSVRFVINLDMPKVTEDYIHRIGRTGRAGTRGLALSF 444
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+ + DVD + IE +G + E+++ ++E + + +V A + A + L
Sbjct: 445 IDEKDVDKLKNIEKEIGMKFEKYDVVDKEAVKLLNKVTIATQKALVFL 492
>gi|46125837|ref|XP_387472.1| hypothetical protein FG07296.1 [Gibberella zeae PH-1]
gi|91206552|sp|Q4I662.1|DBP8_GIBZE RecName: Full=ATP-dependent RNA helicase DBP8
Length = 547
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 186/436 (42%), Positives = 265/436 (60%), Gaps = 18/436 (4%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TF+ L + W VQ+ + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA
Sbjct: 112 TDPNTTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFA 171
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL + +EDP + A+V+TPTRELA Q+ EQFKA+ S L+ +V GG D+ TQA +
Sbjct: 172 VPILQKWSEDPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRTQAIEI 231
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCL 233
RPHV+IATPGR+ + D R +++VLDEADR+L+ G L V +CL
Sbjct: 232 GKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRLLNATGPGSMLPDVEECL 291
Query: 234 -----PKNRQTLLFSATMTSDLQTL--LELSANKAYFYEAYEGFKTV---ETLKQQYIFI 283
RQTLLF+AT+T +++ L + + K + +T+ TLKQ YI +
Sbjct: 292 SVLPPATERQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQTLAIPATLKQMYIKV 351
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P K+ YL H E ++ I+F + + L LL L+ +LHS Q QR
Sbjct: 352 PVTHKEHYL-HTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQR 410
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAGR G
Sbjct: 411 IDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGE 470
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKLMDDG 459
AVSFV Q DV+L IE VG+ +E +E + E V+ D ++ ++ + +++G
Sbjct: 471 AVSFVGQRDVELALTIEKRVGRDMEAWEEEGVNLETRVVRDALKLVSEKKREALLEVEEG 530
Query: 460 FEEKAK-ERKKQKLKM 474
E K +R KQKL++
Sbjct: 531 REVGGKRKRTKQKLRV 546
>gi|291000284|ref|XP_002682709.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096337|gb|EFC49965.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
Length = 955
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/433 (38%), Positives = 259/433 (59%), Gaps = 18/433 (4%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
TT+++ +F LG++ W + +L + PT +Q CIP L GK+V+G++QTGSGKTAAF
Sbjct: 131 TTENSPSFTDLGISSWLEEHLSKLQINMPTVIQEKCIPPTLAGKNVIGMSQTGSGKTAAF 190
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPI+ LA+D YG+ AL+ITP RELA Q+ + F+ L L +R ++VGGMD L QA
Sbjct: 191 ALPIIQNLAKDMYGIYALIITPARELAIQIKQHFEILAGDLPIRVALLVGGMDYLKQAHL 250
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L + PH+V+ TPGRI+ + + F + K+LV DEADR+ + + +L +
Sbjct: 251 LDSSPHIVVGTPGRIEDAIRTFNN-DGYFKKIKYLVFDEADRIFSMDYSLDLDRILSVSN 309
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKA-----------YFYEAYEGFKTVETLKQQYIFI 283
RQTLL+SATM + ++ L +++ + + Y Y+A + F+ + L Q Y+F+
Sbjct: 310 PKRQTLLYSATMNNQVKKLAKMAMSNSGKTKEEREQSLYIYDACKLFQLADNLSQYYLFM 369
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P++VKD Y + +++ + D I +I+F S C L++ L +LH+ KSQ +R
Sbjct: 370 PEHVKDAYFVQLINSLPDNSI--SIVFFSDITQCELMNQTCRLLGISCDSLHASKSQKER 427
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L F+ + L TDVA+RGLDIP V V+NYD+P YVHRVGRTARAGR G+
Sbjct: 428 FAVLKYFRKRRLKFLFCTDVANRGLDIPAVGYVINYDLPDTTDKYVHRVGRTARAGRLGV 487
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQL---EEFECKEQEVLSDITRVYKARRVATMKLMDDGF 460
+S ++Q +V I IE+ Q+ E F+ ++ E + V + + A + L+D GF
Sbjct: 488 CISLISQFEVKRIKAIESDTDVQMAKYEPFDEEQAESEEHLLSVAEQKCKAKITLLDSGF 547
Query: 461 EEK-AKERKKQKL 472
++ K + KQ+L
Sbjct: 548 YDRFEKVKSKQQL 560
>gi|402083808|gb|EJT78826.1| ATP-dependent RNA helicase DBP8 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 571
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 191/438 (43%), Positives = 263/438 (60%), Gaps = 20/438 (4%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD++ +F LG+ W V++ + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA
Sbjct: 136 TDASTSFESLGVQPWLVRSLSNMAIKRPTGIQKSCIPEILKGRDCIGGSRTGSGKTIAFA 195
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL A DP + A+V+T TRELA Q+ EQFKA+ S L+ ++ GG D+ QA +L
Sbjct: 196 VPILQIWAHDPSAIFAVVLTATRELALQIYEQFKAISSPHVLKAILITGGSDMRPQAIAL 255
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEE-LRVVFQCL 233
RP +VIATPGR+ + D R KFLVLDEADR+L G L V +CL
Sbjct: 256 AQRPAIVIATPGRLADHIRTSGEDTICGLKRVKFLVLDEADRLLASGGTGSMLPDVEECL 315
Query: 234 -----PKNRQTLLFSATMTSDLQTLLEL----SANKAYFYEA-YEGFKTVETLKQQYIFI 283
P RQTLLF+AT+T +++ L + A+ E + TL Q Y+ +
Sbjct: 316 DALPPPTERQTLLFTATVTDEIRVLKNMPTRPGKEPAFVCEVDTQKLAIPATLNQTYLML 375
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
P ++ YL +L + + S IIF + + LL +L L+ ALHS Q QR
Sbjct: 376 PVTHREHYLHELLLTKGNAEL-SIIIFCNRSTTAQLLHHMLRLLEHRVTALHSRLPQRQR 434
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVASRGLDIP V LV+NYDIPR P DY+HRVGRTARAGR G
Sbjct: 435 IDNLGRFRASAARILVATDVASRGLDIPEVALVINYDIPRDPDDYIHRVGRTARAGRKGD 494
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQL----EEFECKEQEVLSDITR-VYKARRVATMKLMDD 458
AV+FV Q DVDL+H IE VG+ L EE E V+ D + V + +R A + + ++
Sbjct: 495 AVTFVGQRDVDLVHAIERRVGRPLVAWAEEGVNLETRVVRDSLKLVTEKKREALLDIEEN 554
Query: 459 GFEEKAKERKKQKLKMLA 476
E +RK++KLK+ A
Sbjct: 555 --REVTGKRKREKLKLRA 570
>gi|302916935|ref|XP_003052278.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733217|gb|EEU46565.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 545
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 196/463 (42%), Positives = 274/463 (59%), Gaps = 23/463 (4%)
Query: 36 KNAKTTQLEKFTNPD--PNSTT---TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHC 90
+NAK Q E P P T TD TF+ L + W VQ+ + ++RPT +Q C
Sbjct: 85 RNAKADQKETQAKPSTAPQKTILAPTDPNTTFSALNVRPWLVQSLGNMAIKRPTGIQKGC 144
Query: 91 IPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150
IP+IL+G+D +G ++TGSGKT AFA+PIL + A+DP + A+V+TPTRELA Q+ EQFKA
Sbjct: 145 IPEILKGRDCIGGSRTGSGKTVAFAVPILQKWADDPTAIFAVVLTPTRELALQIYEQFKA 204
Query: 151 LGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFL 209
+ S L+ ++ GG D+ QA L RPHVVIATPGR+ + D R K++
Sbjct: 205 ISSPQSLKAILITGGSDMRAQAIELGKRPHVVIATPGRLADHVRTSGEDTICGLRRVKYV 264
Query: 210 VLDEADRVLD-VGFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTL--LELSANKA 261
VLDEADR+L+ G L V QCL RQTLLF+AT+T +++ L + + K
Sbjct: 265 VLDEADRLLNATGPGSMLPDVEQCLSVLPPATERQTLLFTATITPEVRALKDMPIKPGKQ 324
Query: 262 YFYEAYEGFKTV---ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
+ +T+ TL Q YI +P K+ YL HV E+ ++ I+F + +
Sbjct: 325 PVFVCEVDTQTLAIPATLNQMYIKVPVTHKEHYL-HVFLLTEENVDKTIILFCNRTSTAD 383
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
L LL L+ +LHS Q QR+ L RF++ A IL+ATDVA+RGLDIP V LV+N
Sbjct: 384 YLHHLLRLLEHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVIN 443
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----E 434
YD+PR P DY+HRVGRTARAGR G AVSF+ Q DV+L IE VG+++E +E + E
Sbjct: 444 YDLPRDPDDYIHRVGRTARAGRKGEAVSFIGQRDVELALTIEKRVGREMESWEEEGVNLE 503
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
V+ D+ +V ++ + +++ E K RK+ K K+ AE
Sbjct: 504 TRVVRDVLKVVSEKKREALLEVEENREVGGK-RKRTKQKLQAE 545
>gi|340522490|gb|EGR52723.1| predicted protein [Trichoderma reesei QM6a]
Length = 560
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 195/459 (42%), Positives = 273/459 (59%), Gaps = 19/459 (4%)
Query: 33 PESKNAKTTQLEKF-TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCI 91
P SK + T+Q + + +P TD TFA L + W VQ+ + +RRPT +Q CI
Sbjct: 102 PVSKPSGTSQSQPLPQSQNPILAPTDPNTTFAALNVRPWLVQSLGNMAIRRPTGIQKGCI 161
Query: 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151
P+IL+G+D +G ++TGSGKT AFA+P+L + AEDP + A+V+TPTRELA Q+ EQFKA+
Sbjct: 162 PEILKGRDCIGGSRTGSGKTVAFAVPVLQKWAEDPTAIFAVVLTPTRELALQIYEQFKAI 221
Query: 152 GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLV 210
S L+ +V GG D+ +QA +L RPHV+IATPGR+ + D R +++V
Sbjct: 222 SSPQSLKIILVTGGADMRSQAIALAQRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVV 281
Query: 211 LDEADRVLDVGFEEE-LRVVFQCL-----PKNRQTLLFSATMTSDLQTLLELSANKA--- 261
LDEADR+L G + L V +CL RQTLLF+AT+T +++ L EL
Sbjct: 282 LDEADRLLHAGGKGSMLPDVEECLSVLPPATQRQTLLFTATITPEVRALKELPQRPGKPP 341
Query: 262 -YFYEAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319
+ E + TL Q+++ IP K+ YL HV E ++ IIF + +
Sbjct: 342 VFVCEVDTQMLAIPATLSQKHVQIPVTHKEHYL-HVFLLTEANVNKTVIIFCNRTTTAEY 400
Query: 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
L LL LD +LHS Q QR L RF++ A IL+ATDVA+RGLDI V LV+NY
Sbjct: 401 LHHLLRLLDHRVTSLHSKLPQRQRTDNLARFRASAARILVATDVAARGLDIQEVSLVINY 460
Query: 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQ 435
D+PR P DY+HRVGRTARAGR G AV+ V Q DV+L+ IE VG+++E +E + E
Sbjct: 461 DVPRDPDDYIHRVGRTARAGRKGEAVTLVGQRDVELVLAIEERVGRKMEAWEEEGVNLET 520
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAKERK-KQKLK 473
V+ D +V ++ + M++G E K +K KQKL+
Sbjct: 521 RVIRDALKVVSEKKREALLEMEEGREVGGKRKKTKQKLQ 559
>gi|84994532|ref|XP_951988.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
gi|65302149|emb|CAI74256.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 455
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 241/380 (63%), Gaps = 8/380 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ + CKELG + PT +Q IP L GKD++GLA+TGSGKTAAF +PIL
Sbjct: 42 TFEDLGVCVELCRACKELGWKTPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQ 101
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L E P + +L++ PTREL+ Q+ EQ +L GL + C +++GG+D+++QA L +PH
Sbjct: 102 KLLEKPQRLFSLILAPTRELSLQIKEQLISLEIGLDV-C-LILGGLDMVSQALQLSKKPH 159
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ +PGRI L+ K+LVLDEAD++L F++ L + LPK++ T
Sbjct: 160 IIVGSPGRIADHLQNTKGFS--LETIKYLVLDEADKLLSADFDDSLNKIIISLPKDKVTY 217
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
L+SATMTS + L +++ K + T E L Q+Y+ IP K YL +L K
Sbjct: 218 LYSATMTSKITKLQKVTLMKPIQINVNTKYHTNELLIQKYLLIPLKFKYTYLACILWKYS 277
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
I ++F +TC + ++L L+ L ++V LH SQ QRL++L+ FK+G IL+
Sbjct: 278 TSTI---MVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGLFNILVV 334
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDV SRG+DIP VDLV+N+D+P +DY+HRVGRTARAG+ G++++ +TQ D++ IE
Sbjct: 335 TDVGSRGIDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQYDIEAFQRIE 394
Query: 421 AVVGKQLEEF-ECKEQEVLS 439
+ K+LEE+ + E+EV S
Sbjct: 395 YALNKKLEEYKDISEEEVYS 414
>gi|71030512|ref|XP_764898.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68351854|gb|EAN32615.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 488
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/408 (38%), Positives = 268/408 (65%), Gaps = 12/408 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ W ++ CK L +++PT +Q C+P +GK+++G ++TG+GKT F PIL
Sbjct: 78 TFESLGVPNWIIEICKSLQIKKPTKIQKLCLPSAFKGKNLIGCSETGTGKTICFCWPILT 137
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
LA++PYGV +LV+TPTRELA+Q+++QF+ G +++ VGG+D+++Q+ + RPH
Sbjct: 138 SLAKNPYGVYSLVLTPTRELAFQISDQFRIFGVNMNIVVLSCVGGVDIVSQSIEMEKRPH 197
Query: 181 VVIATPGRIKVLLEE-DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN--- 236
V+IATPGR+ + + ++ +F+ K+LV DE+DR+LD+ F+E L+ + +C+PK+
Sbjct: 198 VIIATPGRLAYQVSNPERNLSSIFANVKYLVFDESDRLLDISFQEPLKEILKCIPKSSEG 257
Query: 237 RQTLLFSATMTSDLQTLLELSANKAY-FYEAYEG----FKTVETLKQQYIFIPKNVKDVY 291
R T +FSAT+T ++TL +N + FY+A E K ++ +Y+F+P++V Y
Sbjct: 258 RITFMFSATITDSIRTLASKISNSTFEFYDATEESSKILKLNRKIEHEYVFLPQHVHITY 317
Query: 292 LMHVLSK--MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L++VL + ++D + IIF+ T + C L+SL L++L+ + +HS QS+R +L +
Sbjct: 318 LVYVLRERFLKDEKAK-GIIFICTKKRCQLVSLTLDQLEFKVTCIHSLMKQSKRTDSLSK 376
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
F+SG + +L+ATD+ SRG+D+P V V+N D P DY+HRVGRT R GR G+A SF+
Sbjct: 377 FRSGYSNLLVATDLVSRGIDVPEVSFVINLDFPGTAFDYIHRVGRTGRGGRQGIAFSFID 436
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
+ DV+ + +E V +L+++E K++E + + +V A + A + L +
Sbjct: 437 EFDVEKVKNVETSVDIKLKKYEIKDKEAVKLLNKVTVATQKAHLYLQE 484
>gi|307214659|gb|EFN89598.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
Length = 377
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 235/353 (66%), Gaps = 5/353 (1%)
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L L E+P ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGGMD+ QA L
Sbjct: 1 MLQALLENPQRYFALVLTPTRELAFQISEQFEALGSSIGVKCAVLVGGMDMSAQALLLSK 60
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+PH++I TPGR+ LE KFLV+ EADR+L++ FE E+ + + +P+ R
Sbjct: 61 KPHIIITTPGRLVDYLENTKGFS--LQNLKFLVMGEADRILNMDFEIEVDKILRVIPRER 118
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+TLLFSATMT +Q L S E ++TVE L+Q YIFIP KDVYL+H+L+
Sbjct: 119 RTLLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN 178
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ S +IF +TC + +LLL L AV LH SQ++R++AL +FK+ +I
Sbjct: 179 ELAG---NSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKARNRSI 235
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L++TDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G +++FVTQ DV+L
Sbjct: 236 LISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQ 295
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
IE ++ KQL + +E EV+ RV +A+R+ M++ D +K +RKK+
Sbjct: 296 RIEQLISKQLPLWPTEEGEVMLLQERVTEAQRIVKMEVKDIEENKKLGKRKKR 348
>gi|451847073|gb|EMD60381.1| hypothetical protein COCSADRAFT_174666 [Cochliobolus sativus ND90Pr]
Length = 1123
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 183/430 (42%), Positives = 259/430 (60%), Gaps = 18/430 (4%)
Query: 19 SKTRSKPEPQP---EPEPESK---NAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAV 72
S+T+++P P+P P S+ A Q K + + + ++FA L +A W V
Sbjct: 646 SETKAQPAPKPLQVAPTTISRVKARANGAQSNKTPSQAADVPAVNQKLSFASLNVAPWLV 705
Query: 73 QTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLAL 132
+ + ++RPT +Q CIP+IL+GKD +G ++TG+GKT AF++PIL + AEDP G+ A+
Sbjct: 706 ASLASMAIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTIAFSVPILQKWAEDPSGIFAV 765
Query: 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KV 191
+ITPTRELA Q+ EQ KA+ + ++ ++ GG D QA L +RPHVVIATPGR+ +
Sbjct: 766 IITPTRELAIQIYEQVKAISAPQSMKPILITGGSDQRAQAIELASRPHVVIATPGRLAEH 825
Query: 192 LLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL----PK-NRQTLLFSATM 246
+ D R +F+V DEADR+L G L + CL PK RQTLLF+AT+
Sbjct: 826 IRTSGEDTICGLRRVRFVVFDEADRLLAPGKGSMLPDLETCLSVLPPKETRQTLLFTATV 885
Query: 247 TSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
T ++ L + + E E L+Q+Y+ P K+ YL HVL
Sbjct: 886 TPEVLALKDQPRAPGRLPIFVSEVDTEDLAIPPRLQQRYLQTPVTHKECYL-HVLLNTPV 944
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+S IIF + ++ LL +L LD ALHS QS R++ L RF++ A IL+AT
Sbjct: 945 NSEKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQSDRVNNLARFRAQAARILVAT 1004
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVA+RGLDIP V LV+N+D+PR P DY+HRVGRTARAGR G A++ + Q DV+L+ IEA
Sbjct: 1005 DVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTAITLIGQRDVELVFAIEA 1064
Query: 422 VVGKQLEEFE 431
VGK++EEFE
Sbjct: 1065 RVGKKMEEFE 1074
>gi|346327204|gb|EGX96800.1| ATP dependent RNA helicase (Dbp8) [Cordyceps militaris CM01]
Length = 575
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 183/436 (41%), Positives = 260/436 (59%), Gaps = 19/436 (4%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TF L + W VQ+ + +RRPT +Q CIP+IL+G+D +G ++TGSGKT AFA
Sbjct: 139 TDPNTTFTALRVRPWLVQSLANMAIRRPTGIQKACIPEILQGRDCIGGSRTGSGKTVAFA 198
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+P+L R AEDP + LV+TPTRELA Q+ EQF+A+ + L+ ++ GG D+ QA +L
Sbjct: 199 VPMLQRWAEDPTAIFGLVLTPTRELALQIYEQFRAIAAPQSLKVLLITGGADMRPQAIAL 258
Query: 176 MNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGF--EEELRVVFQC 232
RPHVVIATPGR+ + D R +++VLDEADR+L G L V QC
Sbjct: 259 RQRPHVVIATPGRLADHVRTSGEDTVGGLRRVRYVVLDEADRLLHAGAGPGSMLPDVEQC 318
Query: 233 L-----PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQYIF 282
L P RQTLLF+ATMT +++ L + + E + TL+Q+++
Sbjct: 319 LAALPPPTERQTLLFTATMTPEVRALAAMPVKPGKQPVFVCEVDTQRLAIPATLRQRHLQ 378
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQ 342
IP K+ YL H+ E ++ I+F + + L +L LD +LHS Q Q
Sbjct: 379 IPVTHKEHYL-HMFLLTEANVDKTIILFCNRTATADFLHHMLRLLDHRVTSLHSKLPQRQ 437
Query: 343 RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402
R+ L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAGR G
Sbjct: 438 RVDNLARFRASAARILIATDVAARGLDIPEVSLVINYDVPRDPDDYIHRVGRTARAGRDG 497
Query: 403 LAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITR-VYKARRVATMKLMD 457
AV+ V Q DV+L+ IE VG+++E + E VL + + V + +R A +++ +
Sbjct: 498 EAVTLVGQRDVELVLAIEERVGREMEAWAEDGVNLETRVLREALKTVSEKKREALLEVEE 557
Query: 458 DGFEEKAKERKKQKLK 473
+ ++R KQKL+
Sbjct: 558 NKEVGGKRKRGKQKLR 573
>gi|340057638|emb|CCC51984.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 510
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 184/433 (42%), Positives = 253/433 (58%), Gaps = 41/433 (9%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ +W + C + + PT +Q CIP IL GK V+G A TGSGKTAAFALP+L
Sbjct: 4 FELLGVQQWLAKQCTYMALHHPTQIQKLCIPAILAGKYVVGGAATGSGKTAAFALPLLQI 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
LAED YGV ALV+TP+RELAYQ+ +QF ALG+ +H+R +++GG+ Q +L RPHV
Sbjct: 64 LAEDIYGVFALVLTPSRELAYQILDQFIALGAPIHVRGALIIGGIPHEEQLSALNGRPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---KNRQ 238
VIATPGR+ +L P+ FS +FLVLDEADR+ E + V + LP R+
Sbjct: 124 VIATPGRLNFMLSTFPETRKAFSHLRFLVLDEADRLTSGDMETDTCQVIEQLPPARPTRR 183
Query: 239 TLLFSATMTSDLQTL-----------------LELSANKAYFYEAYEG------------ 269
TLLF+AT+ L ++ LE+ + A E G
Sbjct: 184 TLLFTATLERRLTSVGGSDVWLKRLGIIDSRQLEVHSTNAVEIERNTGTKNARQYEDNTE 243
Query: 270 ----FKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE 325
FK ETL+Q Y+FIP VK YL+ L + I+F ++C C ++ L L+
Sbjct: 244 NELAFKIPETLRQTYLFIPNMVKLAYLVAALRTAGPDQL--TIVFTNSCMRCEVVRLALQ 301
Query: 326 ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP 385
L +L+S SQ R+ +L FK G A IL+ATD+ASRGLDIP V VL+YD+P+
Sbjct: 302 LLGFPVCSLNSIISQKHRIDSLATFKLGIARILVATDIASRGLDIPAVAFVLHYDLPKEA 361
Query: 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK---EQEVLSDIT 442
Y+HRVGRTARAGR GL+V+FVT++DV L+ +E VG L ++ K E++VL +
Sbjct: 362 STYLHRVGRTARAGREGLSVAFVTEHDVRLVQRLERRVGCTLALWKAKGVGEKDVLRLLD 421
Query: 443 RVYKARRVATMKL 455
V A+ A +++
Sbjct: 422 EVSGAKVQAKLQV 434
>gi|452821215|gb|EME28248.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 404
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 173/383 (45%), Positives = 245/383 (63%), Gaps = 5/383 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+ T TF LG+ + + CK + + P+ +Q IP L G+D++G+A+TGSGKTAAF
Sbjct: 2 SQDTYTFEKLGVCKILCEECKNVNYQTPSKIQIQAIPYALRGRDIIGIAETGSGKTAAFV 61
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL L + ALVI+PTRELA+Q+ E F+ LG + LR V+VGG+D+++QA +
Sbjct: 62 IPILQSLLDHNKPYFALVISPTRELAFQIKEHFELLGRSIALRVVVIVGGVDIVSQAAAF 121
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+PHV++ATPGR+ LE +FLVLDEADR+L + FE+EL + LPK
Sbjct: 122 ARKPHVIVATPGRLVDHLENTKGFS--LQSIRFLVLDEADRLLSMDFEKELEKIIAALPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ+ LFSATMT +Q L +S + E + TVETL Q Y+FIP KD +L+ +
Sbjct: 180 ERQSFLFSATMTRKVQKLQRVSLTNPVKLQVSEKYATVETLIQNYLFIPAKYKDCFLVFL 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
++ IIFV T S LSLLL+ L A A+H Q++RL AL +FK G+
Sbjct: 240 ---CQEWSGHPTIIFVDTQNSTLRLSLLLKNLGFGATAIHGGMLQTKRLEALSKFKQGKK 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
T+L+ATD+ASRGLDIP+VDL++NYDIP + + Y+HRVGRT+RAGR G A++ VTQ D++
Sbjct: 297 TVLIATDLASRGLDIPSVDLIVNYDIPLHVKAYIHRVGRTSRAGRTGRAINLVTQYDIEA 356
Query: 416 IHEIEAVVGKQLEEFECKEQEVL 438
++E + K+L+ + C E V
Sbjct: 357 YQKVEQYIQKKLDAYPCDEDRVF 379
>gi|125559478|gb|EAZ05014.1| hypothetical protein OsI_27195 [Oryza sativa Indica Group]
Length = 414
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 243/393 (61%), Gaps = 8/393 (2%)
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG--VLALVIT 135
+G + PT +Q IP L+G+DV+G+ QTGSGKTAAFALPI+ L E + LA V+
Sbjct: 1 MGWKAPTRIQAEAIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPRFLACVLA 60
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELA Q+A+QF+ALGS + L+C V++GG+ +Q SL RPHVV+ TPGR+ L
Sbjct: 61 PTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDHLTN 120
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
F++ K+LVLDEAD +L V F++ + + +PK R+T LFSATMT ++ L
Sbjct: 121 TKGFS--FNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLRR 178
Query: 256 LSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
E + V+TL+Q +P KD YL+HVL+KM I ++FV TC
Sbjct: 179 ACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMI---MVFVRTCE 235
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
S LL+L+L L +A+++ SQ +RL AL+RF++ IL+ TDVASRGLDI VD+
Sbjct: 236 STRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDV 295
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVV-GKQLEEFECKE 434
V+NYD P +DY+HRVGRTARAG+ G AVS V Q + + E + G+++ +
Sbjct: 296 VINYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFEGEFFKLTEQFLGGEEIPARKVDA 355
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
E++ R+Y ++R+A + + G+ ++ + R
Sbjct: 356 DEIMILHERIYDSKRIALKTMNESGYHKRMRRR 388
>gi|303317020|ref|XP_003068512.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108193|gb|EER26367.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 536
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 274/468 (58%), Gaps = 30/468 (6%)
Query: 35 SKNAKTTQLEKFTNPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGM 80
S+ K + L PD N+ D +F+ LGLA W V + + +
Sbjct: 67 SRIKKKSDLSAAKGPDRNADQPDPVTAKDAFALGLQSMDSSFSSLGLAPWLVGSLSAMAI 126
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
RRPT +Q CIP+IL+G+D +G ++TGSGKT AFA PILHR +EDP+G+ A+V+TPTREL
Sbjct: 127 RRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTREL 186
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDI 199
A Q+ EQFKA+ + L+ ++ GG ++ QA +L RPHVVIATPGR+ ++ D
Sbjct: 187 ALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDT 246
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-----NRQTLLFSATMTSDLQTLL 254
+R + +VLDEADR+L G L V CL +RQTLLF+AT+T +++ L
Sbjct: 247 IYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSAVPSSTSRQTLLFTATVTPEVRALK 306
Query: 255 ELSANKAYFY-----EAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+ +K + + E T+ TLKQ Y+ +P ++ +L HVL + + AI
Sbjct: 307 SMPRSKDRLHIFVTEISTENNTTIPPTLKQCYLQVPMTHREAFL-HVLLSTDANSSKPAI 365
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IF + ++ LL LL L +LHS QS+R S L RF++ A +L+ATDVA+RGL
Sbjct: 366 IFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGL 425
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP+V LV+N+D+PR P DY+HRVGRTARAGR G A++ V Q DV L+ IE VG+Q+
Sbjct: 426 DIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEERVGRQMV 485
Query: 429 EFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE---RKKQKLK 473
+E + + I R + V K G E+ ++ R+ +KLK
Sbjct: 486 AWEEEGVSIEGRIVRGGLLKDVGGAKREALGEIEEGRDVLGRRVRKLK 533
>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
6054]
gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
6054]
Length = 396
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 173/390 (44%), Positives = 239/390 (61%), Gaps = 6/390 (1%)
Query: 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141
+PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL L E LV+ P RELA
Sbjct: 5 KPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELA 64
Query: 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPP 201
YQ+ E F ALGS + +R +VGGMD++ QA+ LM +PH++IATPGRI LE
Sbjct: 65 YQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFS- 123
Query: 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKA 261
K+ V+DEAD++LD+ F L + + +P R T LFSATMT+ ++ L S +
Sbjct: 124 -LKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASLHNP 182
Query: 262 YFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLS 321
++T + L Q + + K+ YL+H+L+ E +G +S IIF T S
Sbjct: 183 VRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLN--EFVG-KSIIIFARTRAHTQRTS 239
Query: 322 LLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI 381
+L L AV LH +Q+QRL +L++FKSG A IL+ATDVA+RGLDIP+VD+V+NYDI
Sbjct: 240 ILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDI 299
Query: 382 PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDI 441
P + YVHRVGRTARAGR G ++S VTQ D+++ IE + K+L + + +L D
Sbjct: 300 PTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKAML-DA 358
Query: 442 TRVYKARRVATMKLMDDGFEEKAKERKKQK 471
V+ R A F EK + ++ K
Sbjct: 359 LHVHVDRAYAEAIRQTKEFHEKTRRGRRGK 388
>gi|84995332|ref|XP_952388.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
gi|65302549|emb|CAI74656.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 477
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 262/406 (64%), Gaps = 19/406 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF GLG+ W ++ CK L +++PT +Q C+P +GK+++G ++TG+GKT F PIL
Sbjct: 78 TFEGLGVPNWIIEICKSLQIKKPTKIQQLCLPSAFKGKNLIGCSETGTGKTICFCWPILT 137
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
LA++PYGV +LV+TPTRELA+Q+++QF+ G +++ VGG+D+++Q+ + RPH
Sbjct: 138 SLAKNPYGVYSLVLTPTRELAFQISDQFRIFGVNMNILVLSCVGGVDIVSQSIEMEKRPH 197
Query: 181 VVIATPGRIKVLLEE-DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN--- 236
V+IATPGR+ + + ++ +FS K+LV DE+DR+LD+ F+E L+ + +C+PK+
Sbjct: 198 VIIATPGRLAYQVSNAERNLSSIFSNVKYLVFDESDRLLDITFQEHLKEILKCIPKSSEG 257
Query: 237 RQTLLFSATMTSDLQTLLELSANKAY-FYEAYEG----FKTVETLKQQYIFIPKNVKDVY 291
R T +FSAT+T ++TL +N + FY+A E K ++ +Y+F+P++ +
Sbjct: 258 RITFMFSATITDAIRTLASKISNTNFEFYDATEESSKVLKLNRKIEHEYLFLPQHER--- 314
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +D G IIF T + C L+SL L++LD + +HS QS+R +L +F+
Sbjct: 315 ---FLKDEKDKG----IIFTCTKKRCQLVSLTLDQLDFKVTCIHSLMKQSKRTDSLSKFR 367
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG + +L+ATD+ SRG+D+P V V+N D P P DY+HRVGRT R GR G+A SF+ +
Sbjct: 368 SGYSNLLVATDLVSRGIDVPEVAFVINLDFPTTPSDYIHRVGRTGRGGRQGIAFSFIDEF 427
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
DVD + +E V +L+++E K++E + + +V A + A + L +
Sbjct: 428 DVDKVKNVENSVEIRLKKYEIKDKEAVKLLNKVTVATQKAHIFLQE 473
>gi|159127543|gb|EDP52658.1| ATP dependent RNA helicase (Dbp8), putative [Aspergillus fumigatus
A1163]
Length = 577
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 181/429 (42%), Positives = 262/429 (61%), Gaps = 24/429 (5%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA L +A W V + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AF++P+L
Sbjct: 112 SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQ 171
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP+G+ +V+TPTR + EQ KA+ + ++ ++ GG D+ QA +L RPH
Sbjct: 172 KWAEDPFGIFGVVLTPTR----SIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPH 227
Query: 181 VVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP----- 234
VVIATPGR+ ++ D R + +VLDEADR+L G L V CL
Sbjct: 228 VVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPS 287
Query: 235 KNRQTLLFSATMTSDLQTLLEL--SANKAYFYE---AYEGFKTVE-TLKQQYIFIPKNVK 288
RQTLLF+AT+T +++ L + SANK + + E T+ TLKQ Y+ +P +
Sbjct: 288 SERQTLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGTIPPTLKQTYLKVPLTHR 347
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ +L HVL E + AI+F + ++ LL +L L +LHS QS+R + L
Sbjct: 348 EAFL-HVLLSTEGNASKPAIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLA 406
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A IL+ATDVASRGLDIPTV LV+NYD+PR P DYVHRVGRTARAGR G AV+ V
Sbjct: 407 RFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVTLV 466
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR------VYKARRVATMKLMDDGFEE 462
Q DV L+ IE VG+Q+EE+ + + + R V +A+R A +++ D+G +
Sbjct: 467 GQRDVQLVLAIEERVGRQMEEWSEEGVSIEGRLVRTGALKEVGEAKREAMVEI-DEGRDV 525
Query: 463 KAKERKKQK 471
++R K K
Sbjct: 526 LGRKRNKLK 534
>gi|452988487|gb|EME88242.1| hypothetical protein MYCFIDRAFT_159470 [Pseudocercospora fijiensis
CIRAD86]
Length = 467
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 187/448 (41%), Positives = 259/448 (57%), Gaps = 26/448 (5%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+S+ + TF LG+ W V + + L + PT +Q IP+I+ G+D +G ++TGSGKT
Sbjct: 29 DSSDANENATFKDLGVDTWLVNSLRHLSITHPTRIQKATIPQIIAGRDCIGGSRTGSGKT 88
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AFALPILH+ A++P G+ LV+TPTRELA Q+ EQF+A+G LRC +V GG D+ Q
Sbjct: 89 IAFALPILHKWAKEPSGIFGLVLTPTRELALQIFEQFQAIGGSQGLRCVLVTGGADMRAQ 148
Query: 172 AKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
A L RPHVVIATPGR+ +E D + +F+VLDEADR+L G L V
Sbjct: 149 AIELSKRPHVVIATPGRLADHVETSGEDTIHGLKKCRFVVLDEADRLLASGKGSMLPAVE 208
Query: 231 QCL-----PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQY 280
CL RQT LF+AT+T +++ L E + E + TL Q Y
Sbjct: 209 TCLDALPSAAKRQTCLFTATVTPEVRALKERPRENGKPPVFVCEVDIDSLAIPPTLTQNY 268
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
+ K+ YL HVL ++ I+F + + +LL LL L+ ALHS
Sbjct: 269 QLVNVLHKEKYL-HVLLGTPANVEKTTIVFCNRTETANLLEYLLRSLEHRVTALHSGLDH 327
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
R++ L RF++ A IL+ATDVASRGLDIP V LV+NYD+PR P DY+HRVGRTARAGR
Sbjct: 328 QDRVNNLARFRARAARILVATDVASRGLDIPDVSLVINYDLPRNPDDYIHRVGRTARAGR 387
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKLM 456
G+A+S V Q DVD++H IEA VG++L E++ + E V+ + + ++ M +
Sbjct: 388 KGMAISLVGQRDVDVVHAIEARVGRELAEYKEEGVGVEGRVVREALNIVGDKKREAMLAI 447
Query: 457 DDGFEEKAKERKKQKLKMLAEKGSLKKR 484
++G + K K R G LKKR
Sbjct: 448 EEGRDVKGKRR----------TGLLKKR 465
>gi|409080848|gb|EKM81208.1| hypothetical protein AGABI1DRAFT_119719 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 398
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 174/418 (41%), Positives = 255/418 (61%), Gaps = 23/418 (5%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
+T +F+ LGL ++ ++L PT +Q CIP L G+D++G+A TGSGKT AF
Sbjct: 2 STPEAKSFSDLGLCTPLIKALEDLKYETPTQIQAECIPPALSGRDIIGIAPTGSGKTIAF 61
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM-DLLTQAK 173
ALPILHRL ++P ALV++PTRELAYQ++ QF+ALG+ + +R V+VGG D + QA
Sbjct: 62 ALPILHRLWDNPQSNFALVLSPTRELAYQISAQFEALGAAMGVRSVVIVGGEEDRVQQAV 121
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L +PH+++ATPGR+ L + K LVLDEADR+ +
Sbjct: 122 RLAKKPHIIVATPGRLHDHLNSTKGFS--LRQLKHLVLDEADRL--------------AI 165
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE-GFKTVETLKQQYIFIPKNVKDVYL 292
P+ R T LFSATMT+++ L S + +KTV +L Q Y+ P K+V L
Sbjct: 166 PRERSTYLFSATMTANVTKLQRASLTDPVRVDVSSFKYKTVPSLLQYYVLCPLVNKEVML 225
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+++++ M I I+FV T LS++L L+ +AV LH SQSQRL A +RFKS
Sbjct: 226 VYLINSMAQNTI---IVFVRTVADAKRLSIVLRTLEFQAVPLHGELSQSQRLGAFNRFKS 282
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G++ IL+ATD+ASRGLD+ VD+V+NYD P +DYVHRVGRTARAGR G ++ V+Q D
Sbjct: 283 GKSNILVATDLASRGLDVANVDVVINYDTPTSSKDYVHRVGRTARAGRAGKSILMVSQYD 342
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
+++ +E + ++LE + + +E+ RVY+ RVA ++ +D + ER+K+
Sbjct: 343 AEVMLRLEMALERKLELYPTEAEEIALLKERVYEVGRVARNQIKEDDMSQ--NERRKR 398
>gi|261194144|ref|XP_002623477.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
SLH14081]
gi|239588491|gb|EEQ71134.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
SLH14081]
Length = 465
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 267/436 (61%), Gaps = 27/436 (6%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 55 TKSFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPI 114
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P + L++ PTRELAYQ++ F+ALGS + +RC V+VGGMD++ QA +L +
Sbjct: 115 LQALMEKPQSLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKK 174
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 175 PHIVVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 232
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATM+S +++L S + + FIP N+K + +
Sbjct: 233 TYLFSATMSSKVESLQRASLSSGLRLPS---------------FIPTNIKTLPRL----S 273
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ + +SAI+F T L++LL L A+ LH SQS RL AL +F+S IL
Sbjct: 274 LNEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDIL 333
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A + VTQ D+++
Sbjct: 334 VATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLEVWLR 393
Query: 419 IEAVVGKQLEEFECKEQE--VLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
IE +GK+LEE++ +++E VLSD RV +A+R A ++ D EK R
Sbjct: 394 IENALGKKLEEYKVEKEEVMVLSD--RVGEAQRHAITEMKD--LHEKRGSRGATLRGRRP 449
Query: 477 EKGSLKKRSEKRKKSG 492
KG+ + R E ++ G
Sbjct: 450 AKGAKRGRDEMDREEG 465
>gi|358398664|gb|EHK48015.1| hypothetical protein TRIATDRAFT_46772 [Trichoderma atroviride IMI
206040]
Length = 543
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 276/473 (58%), Gaps = 31/473 (6%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKE 77
K +T+S +P P+ +++N P TD TF+ L + W VQ+ +
Sbjct: 84 KEETKSTAKPAAIPQSQAQN-------------PILAPTDPNTTFSALTVRPWLVQSLEN 130
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
+ ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+P+L + AEDP + A+V+TPT
Sbjct: 131 MAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPVLQKWAEDPSAIFAVVLTPT 190
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-ED 196
RELA Q+ EQFKA+ S L+ ++ GG D+ QA +L RPH++IATPGR+ +
Sbjct: 191 RELALQIYEQFKAISSPQSLKMILITGGADMRAQAIALAQRPHIIIATPGRLADHIRTSG 250
Query: 197 PDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL-----PKNRQTLLFSATMTSDL 250
D R +++VLDEADR+L G L V +CL RQTLLF+AT+T ++
Sbjct: 251 EDTICGLRRVRYVVLDEADRLLHASGSGSMLPDVEECLSVLPPASERQTLLFTATITPEV 310
Query: 251 QTLLELSANKA----YFYEAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
+ L +L + E + TL Q+++ IP K+ YL HV E +
Sbjct: 311 RALKDLPQRPGKPPVFVCEVDTQMLAIPATLSQRHVQIPITHKEHYL-HVFLLTEANINK 369
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
S IIF + + L LL LD +LHS Q QR L RF++ A IL+ATDVA+
Sbjct: 370 SIIIFCNRTTTADYLHHLLRLLDHRVTSLHSKLPQRQRTDNLARFRASAARILVATDVAA 429
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDI V LV+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DVDL+ IE VG+
Sbjct: 430 RGLDIQEVSLVVNYDIPRDPDDYIHRVGRTARAGRKGEAVTFVGQRDVDLVLAIEERVGR 489
Query: 426 QLEEFECK----EQEVLSDITRVYKARRVATMKLMDDGFEEKAK-ERKKQKLK 473
Q+E +E + E V+ D ++ ++ + M++G E K +R KQKL+
Sbjct: 490 QMEAWEEEGVNLETRVIRDALKLVGEKKREALLEMEEGREVGGKRKRTKQKLQ 542
>gi|358386955|gb|EHK24550.1| hypothetical protein TRIVIDRAFT_30234 [Trichoderma virens Gv29-8]
Length = 544
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 195/459 (42%), Positives = 272/459 (59%), Gaps = 21/459 (4%)
Query: 32 EPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCI 91
+P SK A +Q + + +P TD TF+ L + W VQ+ + +RRPT +Q CI
Sbjct: 89 KPVSKPAAASQPQ---SQNPILAPTDPNTTFSALNVRPWLVQSLGNMAIRRPTGIQKGCI 145
Query: 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151
P+IL+G+D +G ++TGSGKT AFA+P+L + AEDP + A+V+TPTRELA Q+ EQFKA+
Sbjct: 146 PEILKGRDCIGGSRTGSGKTVAFAVPVLQKWAEDPTAIFAVVLTPTRELALQIYEQFKAI 205
Query: 152 GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLV 210
S L+ +V GG D+ +QA +L RPHV+IATPGR+ + D R +++V
Sbjct: 206 SSPQSLKMILVTGGADMRSQAIALAQRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVV 265
Query: 211 LDEADRVLD-VGFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTLLELSANKA--- 261
LDEADR+L G L V +CL RQTLLF+AT+T +++ L +L
Sbjct: 266 LDEADRLLHAAGSGSMLPDVEECLSVLPPASERQTLLFTATITPEVRALKDLPQRPGKLP 325
Query: 262 -YFYEAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319
+ E + TL Q+++ IP K+ YL HV E ++ IIF + +
Sbjct: 326 VFVCEVDTQMLAIPATLSQKHVQIPITHKEHYL-HVFLLTEANINKTVIIFCNRTSTAEY 384
Query: 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
L LL LD +LHS Q QR L RF++ A IL+ATDVA+RGLDI V LV+NY
Sbjct: 385 LHHLLRLLDHRVTSLHSKLPQRQRTDNLARFRASAARILVATDVAARGLDIQEVSLVVNY 444
Query: 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQ 435
DIPR P DY+HRVGRTARAGR G AV+ V Q DV+L+ IE VG+Q+E +E + E
Sbjct: 445 DIPRDPDDYIHRVGRTARAGRKGEAVTLVGQRDVELVLAIEERVGRQMEAWEEEGVNLET 504
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAK-ERKKQKLK 473
V+ D +V ++ + M++G E K +R KQKL+
Sbjct: 505 RVIRDALKVVGEKKREALLEMEEGREVGGKRKRTKQKLQ 543
>gi|451998004|gb|EMD90469.1| hypothetical protein COCHEDRAFT_1179307 [Cochliobolus heterostrophus
C5]
Length = 1062
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/430 (42%), Positives = 261/430 (60%), Gaps = 22/430 (5%)
Query: 23 SKPEPQPEPEP-ESKNAKTTQLEKFTN-PDPNSTTTDST--------VTFAGLGLAEWAV 72
S+ E QP P+P + A ++++ TN NST++ + ++FA L +A W V
Sbjct: 585 SEIEAQPAPKPLQVAPATVSRVKARTNGAQSNSTSSQAANVPVVSQKLSFASLNVAPWLV 644
Query: 73 QTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLAL 132
+ + ++RPT +Q CIP+IL+GKD +G ++TG+GKT AF++PIL + AEDP G+ A+
Sbjct: 645 ASLASMAIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTIAFSVPILQKWAEDPSGIFAV 704
Query: 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KV 191
+ITPTRELA Q+ EQ KA+ + ++ ++ GG D QA L +RPHVVIATPGR+ +
Sbjct: 705 IITPTRELAIQIYEQVKAISAPQSMKPILITGGSDQRAQAIELASRPHVVIATPGRLAEH 764
Query: 192 LLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL----PK-NRQTLLFSATM 246
+ D R +F+V DEADR+L G L + CL PK RQTLLF+AT+
Sbjct: 765 IRTSGEDTICGLRRVRFVVFDEADRLLAPGKGSMLPDLETCLSVLPPKETRQTLLFTATV 824
Query: 247 TSDLQTLLELSANKAYFYEAYEGFKTVE-----TLKQQYIFIPKNVKDVYLMHVLSKMED 301
T ++ L + T E L+Q+Y+ P K+ YL +VL
Sbjct: 825 TPEVLALKDQPRAPGRLPIFVSEVDTEELAIPPRLQQRYLQTPVTHKECYL-YVLLNTPV 883
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
+S IIF + ++ LL +L LD ALHS QS R++ L RF++ A IL+AT
Sbjct: 884 NSEKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQSDRVNNLARFRAQAARILVAT 943
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DVA+RGLDIP V LV+N+D+PR P DY+HRVGRTARAGR G A++ + Q DV+L+ IEA
Sbjct: 944 DVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTAITLIGQRDVELVLAIEA 1003
Query: 422 VVGKQLEEFE 431
VGK++EEFE
Sbjct: 1004 RVGKKMEEFE 1013
>gi|119187445|ref|XP_001244329.1| hypothetical protein CIMG_03770 [Coccidioides immitis RS]
gi|118578050|sp|Q1E0Z3.1|DBP8_COCIM RecName: Full=ATP-dependent RNA helicase DBP8
gi|392871055|gb|EAS32917.2| ATP-dependent RNA helicase DBP8 [Coccidioides immitis RS]
Length = 536
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 274/468 (58%), Gaps = 30/468 (6%)
Query: 35 SKNAKTTQLEKFTNPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGM 80
S+ K + L PD N+ D +F+ LGLA W V + + +
Sbjct: 67 SRIKKKSDLSAAKGPDRNADQPDPVTAKDAFAMGLQSMDSSFSSLGLAPWLVGSLSAMAI 126
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
RRPT +Q CIP+IL+G+D +G ++TGSGKT AFA PILHR +EDP+G+ A+V+TPTREL
Sbjct: 127 RRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTREL 186
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDI 199
A Q+ EQFKA+ + L+ ++ GG ++ QA +L RPHVVIATPGR+ ++ D
Sbjct: 187 ALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDT 246
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-----NRQTLLFSATMTSDLQTLL 254
+R + +VLDEADR+L G L V CL +RQTLLF+AT+T +++ L
Sbjct: 247 IYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSTSRQTLLFTATVTQEVRALK 306
Query: 255 ELSANK----AYFYE-AYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+ K + E + E T+ TLKQ Y+ +P ++ +L HVL + + AI
Sbjct: 307 SMPRPKDRLPIFVTEISTENNTTIPPTLKQCYLQVPMTHREAFL-HVLLSTDANSSKPAI 365
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IF + ++ LL LL L +LHS QS+R S L RF++ A +L+ATDVA+RGL
Sbjct: 366 IFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGL 425
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP+V LV+N+D+PR P DY+HRVGRTARAGR G A++ V Q DV L+ IE VG+Q+
Sbjct: 426 DIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEERVGRQMV 485
Query: 429 EFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE---RKKQKLK 473
+E + + I R + V K G E+ ++ R+ +KLK
Sbjct: 486 AWEEEGVSIEGRIVRGGLLKDVGGAKREALGEIEEGRDVLGRRVRKLK 533
>gi|124513404|ref|XP_001350058.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|23615475|emb|CAD52466.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|117956288|gb|ABK58712.1| SF2-family helicase [Plasmodium falciparum]
Length = 490
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/423 (37%), Positives = 260/423 (61%), Gaps = 14/423 (3%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
+ +TF LG+ +W ++ K + + PT +Q C+P I++GK+V+G ++TGSGKT +
Sbjct: 68 NNITFEELGVEDWLIKISKSVHILYPTKIQQLCLPLIIQGKNVIGSSETGSGKTICYCWS 127
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL L ++ YG+ +L++ PTREL +Q+ EQF GS + + +GG L+ Q KS+M
Sbjct: 128 ILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSCIGGFSLIEQRKSVMT 187
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN- 236
+PH+++ TPGRI +LE DI F R +FLVLDEAD +L FE++L+ + LPKN
Sbjct: 188 KPHIIVGTPGRISDILESSIDIQNCFKRLRFLVLDEADLLLQKCFEDKLQNILNNLPKNY 247
Query: 237 ---RQTLLFSATMTSDLQTLLE-LSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
R+TL FS+T+T+ LQ L++ N + K + L Q+YI++ + YL
Sbjct: 248 ANERKTLFFSSTITNSLQLLIDTFPYNNLILVNVNKKQKPPKNLDQRYIYVEEIAHITYL 307
Query: 293 MHVL-SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV-ALHSFKSQSQRLSALHRF 350
+++L +K+ ++ S IIF + C L+ +L L + V A+HS K Q R + L +F
Sbjct: 308 IYILKNKVNNL---SGIIFTANSYKCELVYTVLNMLGIDNVDAMHSSKDQKNRFATLAKF 364
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G IL+ATD+ SRG+DIP + V+N+D P Y+HRVGRTARA R GLA+SF+ +
Sbjct: 365 KNGLCKILVATDIISRGIDIPKISFVINFDFPNDTVQYIHRVGRTARANRKGLAISFIDK 424
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
DV+ ++++ ++ +L+ + ++EVL ++ ++ + + A + L E+K +R+ +
Sbjct: 425 KDVNSFNQVKNIMKDKLKPYTLNKKEVLENMFKIGRVIKKAEIMLE----EKKDIKRENE 480
Query: 471 KLK 473
+LK
Sbjct: 481 RLK 483
>gi|125601387|gb|EAZ40963.1| hypothetical protein OsJ_25445 [Oryza sativa Japonica Group]
Length = 414
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/393 (42%), Positives = 242/393 (61%), Gaps = 8/393 (2%)
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVIT 135
+G + PT +Q IP L+G+DV+G+ QTGSGKTAAFALPI+ L E + A V+
Sbjct: 1 MGWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPCFFACVLA 60
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELA Q+A+QF+ALGS + L+C V++GG+ +Q SL RPHVV+ TPGR+ L
Sbjct: 61 PTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDHLTN 120
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
F++ K+LVLDEAD +L V F++ + + +PK R+T LFSATMT ++ L
Sbjct: 121 TKGFS--FNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLRR 178
Query: 256 LSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
E + V+TL+Q +P KD YL+HVL+KM I ++FV TC
Sbjct: 179 ACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMI---MVFVRTCE 235
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
S LL+L+L L +A+++ SQ +RL AL+RF++ IL+ TDVASRGLDI VD+
Sbjct: 236 STRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDV 295
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVV-GKQLEEFECKE 434
V+NYD P +DY+HRVGRTARAG+ G AVS V Q + + E + G+++ +
Sbjct: 296 VINYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFEGEFFKLTEQFLGGEEIPARKVDA 355
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
E++ R+Y ++R+A + + G+ ++ + R
Sbjct: 356 DEIMILHERIYDSKRIALKTMNESGYHKRMRRR 388
>gi|340502092|gb|EGR28809.1| hypothetical protein IMG5_168450 [Ichthyophthirius multifiliis]
Length = 409
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/405 (40%), Positives = 255/405 (62%), Gaps = 12/405 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
+T TF L L + ++ C+++ + PT +Q IP IL K+V+ A+TGSGKTAAF+ P
Sbjct: 2 NTNTFKSLNLHSFLLKICEKIEYKTPTKIQQLSIPAILNKKNVVINAETGSGKTAAFSFP 61
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL L+EDP G+ A+V+T RELA Q++EQ GS L+LR +VGG+D QA L
Sbjct: 62 ILQFLSEDPRGIFAIVLTANRELALQISEQLSIFGSSLNLRVSTLVGGIDFAKQASELEL 121
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
PH+++ TPGR +L + +FLVLDEADR+ + +++ + +P+ +
Sbjct: 122 IPHIIVGTPGRTADMLRKSDIFREYVENLEFLVLDEADRLFEEKVFTDIQEIIGQIPEKK 181
Query: 238 QTLLFSATMTSD------LQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
Q +L +AT+ LQ +L + N +F + K V+T+ Q+Y IP+ VKD +
Sbjct: 182 QVILATATINEQDFCPKKLQKILCIKDNIEFFSTNKQK-KMVQTVVQKYGLIPELVKDEF 240
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+++L K ++ I IIF + C++C+ L LL+ L+ V LHS QSQR++ L F+
Sbjct: 241 LINILEKYKETQI---IIFTNKCQTCNFLHFLLKNLNFSNVNLHSKLKQSQRIAHLKTFR 297
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+ IL++TDVASRGLDIP V LV+NYD+PR DY+HRVGRTAR G+ G+++S TQ
Sbjct: 298 NQTVNILVSTDVASRGLDIPAVQLVINYDMPRNYEDYIHRVGRTARKGKRGVSISICTQF 357
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDI-TRVYKARRVATMKL 455
DV+L+ IEA +G++++E + + E+++ + +V KA+++ ++L
Sbjct: 358 DVELLKNIEANIGEEMKEIQI-DNEIINGLQVKVGKAKKIVKIQL 401
>gi|115396304|ref|XP_001213791.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|121738779|sp|Q0CNX1.1|DBP8_ASPTN RecName: Full=ATP-dependent RNA helicase dbp8
gi|114193360|gb|EAU35060.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 527
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 186/440 (42%), Positives = 261/440 (59%), Gaps = 31/440 (7%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L +A W + + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL
Sbjct: 87 SFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPILQ 146
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP+G+ A+V+TPTRELA Q+ EQFKA+ + ++ ++ GG D+ QA +L RPH
Sbjct: 147 KWAEDPFGIFAVVLTPTRELALQIYEQFKAISAPQSMKPVLITGGTDMRPQALALSQRPH 206
Query: 181 VVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-----P 234
VVIATPGR+ ++ D R + +VLDEADR+L G L V CL
Sbjct: 207 VVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPS 266
Query: 235 KNRQTLLFSATMTSDLQTLLEL---SANKAYFYEAYEGFKTVE--------------TLK 277
RQTLLF+AT+T +++ L + S F E T TLK
Sbjct: 267 SERQTLLFTATVTPEVRALKSMPRASTKPPVFVTEIEAGGTTSAGADGAAPKSTLPPTLK 326
Query: 278 QQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSF 337
Q Y+ +P ++ +L HVL + + AIIF + ++ LL LL L +LHS
Sbjct: 327 QTYLKVPMTHREAFL-HVLLSTDGNAGKPAIIFCNHTKTADLLERLLRRLAHRVTSLHSL 385
Query: 338 KSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTAR 397
QS+R S L RF++ A IL+ATDVASRGLDIP+V LV+NYD+PR P DYVHRVGRTAR
Sbjct: 386 LPQSERSSNLARFRASAARILVATDVASRGLDIPSVALVVNYDVPRNPDDYVHRVGRTAR 445
Query: 398 AGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR------VYKARRVA 451
AGR G AV+ V Q DV L+ IE VG+Q+EE+ + V + R V A+R A
Sbjct: 446 AGRRGEAVTLVGQRDVQLVLAIEERVGRQMEEWSEEGVSVEGRVVRTGVLKEVGSAKREA 505
Query: 452 TMKLMDDGFEEKAKERKKQK 471
+++ ++G + ++R K K
Sbjct: 506 LIEI-EEGRDVLGRKRNKLK 524
>gi|385304922|gb|EIF48922.1| dbp8p [Dekkera bruxellensis AWRI1499]
Length = 398
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/379 (43%), Positives = 238/379 (62%), Gaps = 9/379 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F +G+ W + + + PTP+Q IP+IL+G+D +G A+TGSGKT AFA P+L
Sbjct: 3 SFEEIGVPAWLREALHAMRITTPTPIQAATIPEILKGRDCIGGAKTGSGKTIAFAAPMLT 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ AEDP G+ +V+TPTRELA Q+AEQF ALG+ ++L E+V+GG ++ Q+ + P
Sbjct: 63 KWAEDPCGIFGIVLTPTRELAMQIAEQFTALGANINLXVELVIGGESMIEQSNXIKENPD 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--NRQ 238
VIATPGR+ ++ E PD R K+LVLDEADR+L F E+L LP+ RQ
Sbjct: 123 FVIATPGRLAHIMMEHPDDVRGLKRVKYLVLDEADRLLTDTFGEDLATCMNSLPEPTKRQ 182
Query: 239 TLLFSATMTSDLQTL----LELSANKAYFYEAYEGFKTV--ETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++L +E + YE + + E L ++ P VK+ +
Sbjct: 183 TLLFTATVTDSVRSLKDKXVEXGKQPVFIYELDKMDDVIIPEKLYLGFMLTPFMVKEA-M 241
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+H L ED S I+FV+ + L +L +LD + +LHS Q +R ++L RF++
Sbjct: 242 LHDLLTGEDYXDASCIVFVNRSETAETLRRILFKLDIKVTSLHSQLPQQERTNSLQRFRA 301
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G A +L+ TD+ SRGLDIP V LV+NYDIPR P D++HRVGRTARAGR G A+S VT ND
Sbjct: 302 GAARVLVTTDLGSRGLDIPIVKLVINYDIPRDPDDFIHRVGRTARAGRKGDAISLVTPND 361
Query: 413 VDLIHEIEAVVGKQLEEFE 431
+ I IE + +++EE++
Sbjct: 362 IKRIMAIEKRIDRKMEEYK 380
>gi|453088320|gb|EMF16360.1| DEAD-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 507
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 183/463 (39%), Positives = 266/463 (57%), Gaps = 20/463 (4%)
Query: 21 TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGM 80
+R K P+ +P + ++ ++ T ST + +TF LG++ W + K L +
Sbjct: 39 SRIKKSKAPKVQPVASSSTEEPVDAITL----STDLNEKLTFKDLGVSPWLIHALKNLSI 94
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
PT +Q IP+IL GKD +G ++TGSGKT AFALPIL + A++P G+ AL++TPTREL
Sbjct: 95 TNPTRIQKSTIPEILAGKDCIGGSRTGSGKTIAFALPILQQWAKEPSGIYALILTPTREL 154
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEEDPDI 199
A Q+ EQ +A+G ++ +V GG ++ QA L +PH+VIATPGR+ +L D
Sbjct: 155 ALQIYEQIQAIGGNQGIKSVLVTGGAEMRKQAIELEKKPHIVIATPGRLADHVLNSGEDT 214
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTLL 254
+ KF+V DEADR+L G L V +CL RQTLLF+AT+T +++ L
Sbjct: 215 IRGLKKVKFVVFDEADRLLQSGKGSMLGDVERCLDAVPSAAKRQTLLFTATVTPEVRALK 274
Query: 255 ELSANKA----YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAII 309
E + E + TL Q Y + K+ YL +LS ++ ++ II
Sbjct: 275 ESPRENGRPPPFVSEVDIDSLAIPSTLTQTYQLVNVLHKEKYLHILLSTPANIQ-KTTII 333
Query: 310 FVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369
F + + +LL +L L+ ALHS + R++ L RF++G A IL+ATDVA RGLD
Sbjct: 334 FTNRTTTANLLEYMLRSLEHRITALHSALTHEDRVNNLARFRAGAARILVATDVAGRGLD 393
Query: 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEE 429
IP V LV+NYD+PR P DY+HRVGRTARAGR G+A+S V Q DVDL+ IEA VGK +
Sbjct: 394 IPDVGLVINYDLPRNPDDYIHRVGRTARAGRVGVAISLVGQRDVDLVKAIEARVGKAMVA 453
Query: 430 FE----CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+E E V+ + V ++ M +++G + K K R+
Sbjct: 454 YEETGVNVETRVIREALNVVGDKKREAMLNIEEGRDVKGKRRR 496
>gi|322707196|gb|EFY98775.1| ATP-dependent RNA helicase DBP8 [Metarhizium anisopliae ARSEF 23]
Length = 549
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 192/461 (41%), Positives = 270/461 (58%), Gaps = 21/461 (4%)
Query: 36 KNAKTTQLEKFTNPDPNS---TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIP 92
+ A TQ E+ P++ TD +F+ L + W VQ+ + ++RPT +Q CIP
Sbjct: 91 RKANHTQAEQEAMIQPSNPILAPTDPNTSFSSLNVRPWLVQSLANMAIKRPTGIQKGCIP 150
Query: 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152
+IL+G+D +G ++TGSGKT AFA+PIL + AEDP + +V+TPTRELA Q+ EQFKA+
Sbjct: 151 EILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPSAIFGVVLTPTRELALQIYEQFKAIS 210
Query: 153 SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVL 211
S L+ +V GG D+ QA ++ RPHV+IATPGR+ + D R +F+VL
Sbjct: 211 SPQSLKAILVTGGSDMRAQAIAMAQRPHVIIATPGRLADHIRTSGEDTICGLRRVRFVVL 270
Query: 212 DEADRVLD-VGFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTLLEL----SANKA 261
DEADR+L G L V +CL RQTLLF+AT+T +++ L +
Sbjct: 271 DEADRLLHAAGPGSMLPDVEECLSVLPPAAERQTLLFTATITPEVRALKSMPQKPGKQPV 330
Query: 262 YFYEAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLL 320
+ E + TL Q +I IP K+ YL HV E ++ IIF + + L
Sbjct: 331 FVCEVDTQMLAIPTTLHQTHIQIPVTHKEHYL-HVFLLTEANKDKTIIIFCNRTATADYL 389
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
LL LD +LHS Q QR+ L RF++ A IL+ATDVA+RGLDIP V LV+NYD
Sbjct: 390 HHLLRLLDHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVVNYD 449
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQE 436
IPR P DY+HRVGRTARAGR G + +FV Q DV+L+ IE VG+Q++ +E + E
Sbjct: 450 IPRDPDDYIHRVGRTARAGRTGESATFVGQRDVELVLAIENRVGRQMDAWEEEGVNLETR 509
Query: 437 VLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
VL D +V ++ + +++G E K RK+ K+K+ AE
Sbjct: 510 VLRDALKVVSEKKREALLEVEEGREVGGK-RKRAKMKLRAE 549
>gi|156088623|ref|XP_001611718.1| DEAD/DEAH box helicase family protein [Babesia bovis]
gi|154798972|gb|EDO08150.1| DEAD/DEAH box helicase family protein [Babesia bovis]
Length = 480
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 267/464 (57%), Gaps = 23/464 (4%)
Query: 8 DRNFPLFAKPKSKTRSKPEPQPEPE-PESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLG 66
D F L A K + K E E E+K EK ++F LG
Sbjct: 25 DMQFKLIAHKKQAKKRKVEHNDAKECDENKEVLLVHDEKTVG-----------MSFKDLG 73
Query: 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP 126
+ EW +Q + ++ PT +Q C+P G +V+G AQTG+GKT F PIL LA++P
Sbjct: 74 VPEWLIQLASAVSIKAPTKIQELCLPAAFSGHNVIGCAQTGTGKTICFCWPILVALAKNP 133
Query: 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATP 186
YGV LV+T +RELA+Q+ +QF G +++R V VGG D + Q+ L RPHVVIATP
Sbjct: 134 YGVFGLVLTGSRELAFQIGDQFNVFGVQMNIRICVCVGGDDFVEQSLQLEARPHVVIATP 193
Query: 187 GRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---KNRQTLLF 242
GR+ ++ ++ +I VF + K+LV DEAD++L FEE L+ + +CLP R T LF
Sbjct: 194 GRLAYQVDIKERNIANVFKKVKYLVFDEADKLLHSEFEEPLQQILKCLPTTNDGRITYLF 253
Query: 243 SATMTSDLQTLLE-LSANKAYFYEAYEG----FKTVETLKQQYIFIPKNVKDVYLMHVL- 296
SAT+T +Q L + + + ++ +G F ++ LKQ Y+F+P+NV YL+H+L
Sbjct: 254 SATITKAIQELSKSFKGTQFHMFDVTKGQEEQFHELD-LKQNYLFLPENVHLPYLVHLLQ 312
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ + IIF +T + C L ++ LE LD + +HS Q +R + L +F++G +
Sbjct: 313 TQLLERETDQGIIFTATKKKCQLTAVALEYLDFKVTCIHSLMKQRKRNACLAKFRTGVSK 372
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATD+ +RG+DI V V+N D PR DY+HRVGRTAR+ G+A+SFV + D++ +
Sbjct: 373 ILVATDLIARGIDIQAVSFVVNLDFPRTTEDYIHRVGRTARSKSTGIAISFVDEFDIEKL 432
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGF 460
+E +LE+ E + + + + +V A + A + L ++ +
Sbjct: 433 KTVEKAANIKLEKLEVDDAQAVKLLNKVSMATQRAQIYLQENNY 476
>gi|440636147|gb|ELR06066.1| ATP-dependent RNA helicase dbp8 [Geomyces destructans 20631-21]
Length = 506
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 261/454 (57%), Gaps = 21/454 (4%)
Query: 36 KNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKIL 95
K++K T + P P D TF LGL W V + + +RRPT +Q CIP+IL
Sbjct: 61 KSSKLTSVASKAAPLPILAPVDQNTTFDSLGLKPWLVNSLGSMAIRRPTGIQKGCIPEIL 120
Query: 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL 155
G+D +G ++TGSGKT AF PIL + AEDP G+ AL++TPTRELA Q+ EQ KA+ S
Sbjct: 121 NGRDCIGGSRTGSGKTVAFTAPILQKWAEDPIGIYALILTPTRELALQIYEQVKAISSPQ 180
Query: 156 HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE---EDPDIPPVFSRTKFLVLD 212
L+ ++ GG+D+ QA +L RPH+VIATPGR+ + ED I R K +VLD
Sbjct: 181 SLKPILITGGVDMRPQALALSARPHIVIATPGRLADHIRTSGEDTIIG--LRRVKVVVLD 238
Query: 213 EADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL--SANKAYFY----EA 266
EADR+L G + + +RQTLLF+AT+T +++ L +L + K + +A
Sbjct: 239 EADRLLASGNAGSM---LPAVSDDRQTLLFTATVTPEVRALKDLPRAPGKLPLFICEIDA 295
Query: 267 YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326
L+Q ++ +P ++ YL H+L E +S IIF + + L+ LL
Sbjct: 296 ANPLALPAGLQQTHLSVPVTHREHYL-HMLLLTEANVNKSVIIFCNRTVTADYLTHLLRL 354
Query: 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
L ALHS Q QR L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR
Sbjct: 355 LAHRVTALHSKLPQRQRTDNLARFRASAARILVATDVAARGLDIPEVGLVVNYDVPRDAD 414
Query: 387 DYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDIT 442
DY+HRVGRTARAGR G AV+ V Q DV LI IE VG+ +E +E + E VL D
Sbjct: 415 DYIHRVGRTARAGRKGQAVTLVGQRDVGLIKAIEERVGRDMEAWEEEGVNLETRVLKDAL 474
Query: 443 RVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
+V +R +++G E K +K ++ LA
Sbjct: 475 KVVGEKRREAWVEIEEGREVGGK--RKTGMRRLA 506
>gi|68074823|ref|XP_679328.1| RNA helicase [Plasmodium berghei strain ANKA]
gi|56500050|emb|CAH96512.1| RNA helicase , putative [Plasmodium berghei]
Length = 421
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 254/403 (63%), Gaps = 11/403 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ +W ++ K + + +PT +Q C+P I+EGK+V+G ++TG+GKT + +L
Sbjct: 1 SFEELGVDDWLIKISKSVQIIKPTKIQKLCLPLIIEGKNVIGSSETGTGKTICYCWGMLQ 60
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L ++ Y + L++ PTREL +Q+ EQF+ G+ + ++ +GG L+ Q KS++++PH
Sbjct: 61 ELNKNLYAIFGLILLPTRELVFQIVEQFQLYGNKIGVKILSCIGGFSLIDQRKSILSKPH 120
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN---- 236
+V+ TPGR+ +L++ D+ F R KFLVLDEAD +L FEE+L+++ +PK
Sbjct: 121 IVVGTPGRVSDILDDCIDVKNCFKRLKFLVLDEADLLLQKSFEEKLKIILNNIPKEVFGE 180
Query: 237 -RQTLLFSATMTSDLQTLLELSAN-KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
R+TL FS+T+T + L++ N K A + K ++ L Q+YI+I + YL++
Sbjct: 181 PRRTLFFSSTITDSINLLIKTFPNDKLILVNANKKQKPLKNLDQRYIYIDSIAQMTYLVY 240
Query: 295 VL-SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV-ALHSFKSQSQRLSALHRFKS 352
+L +K+ +M S IIF + C L+ +L L ++ ++HS K Q +R+S+L +FK+
Sbjct: 241 ILKNKLTEM---SGIIFTANSYKCELIYTVLNSLGSFSIESIHSSKDQRKRMSSLLKFKN 297
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G IL+ATD+ SRG+DIP V V+N+D P Y+HR+GRTARA R GL++SFV + D
Sbjct: 298 GLCKILIATDIISRGIDIPKVAFVINFDFPNDTIQYIHRIGRTARANRKGLSISFVDKKD 357
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+ + ++ ++ K+L+ + + EVL+D+ ++ K + A M L
Sbjct: 358 LKSFNNVKIIMKKKLKPYILNKNEVLTDMLKIGKVVKKAEMML 400
>gi|401884069|gb|EJT48246.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 435
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 244/397 (61%), Gaps = 33/397 (8%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+++ ++C+ LG + PT +Q IP L G+D++G+AQTGS
Sbjct: 25 TFADLGVSKELCESCESLGFKHPTDIQVAAIPPALTGRDIIGIAQTGSA----------- 73
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ P + +A+Q +ALG+ + +R V+VGGMD+++Q+ +L RPH
Sbjct: 74 ----------VLLAHPRSD---SIAKQVQALGAPIGVRTAVIVGGMDMMSQSIALSKRPH 120
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LVLDEADR+LD+ F + + + +PK R T
Sbjct: 121 IIVATPGRLMDHLENTKGFS--LKALKYLVLDEADRLLDLDFGPIIDKLLKVIPKERNTF 178
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSAT+++ ++ L S NK + + TV TL Q Y+F P+ KD YL ++++++
Sbjct: 179 LFSATLSTKVEKLKRASLNKPIQVKVDSKYSTVSTLMQYYVFFPEVQKDAYLFYLVNELS 238
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S IIF ST LS++L L A+ LH SQS RL +L++FKSG IL+A
Sbjct: 239 S---SSMIIFTSTVDRAQRLSIMLNRLGYPAIPLHGQMSQSARLGSLNKFKSGGRKILVA 295
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP+VDLV+N+DIP +DYVHRVGRTARAGR G +++ VTQ DV ++ IE
Sbjct: 296 TDVASRGLDIPSVDLVINFDIPSNSKDYVHRVGRTARAGRSGKSITLVTQYDVVMLKGIE 355
Query: 421 AVVGKQLEEFECKEQEV--LSDITRVYKARRVATMKL 455
A +G+QL F+C ++ V LSD RV +A R A +++
Sbjct: 356 AAIGRQLPAFDCDKEAVAILSD--RVNEAARAARIEM 390
>gi|358256585|dbj|GAA50154.1| ATP-dependent RNA helicase DDX49/DBP8 [Clonorchis sinensis]
Length = 766
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 175/452 (38%), Positives = 265/452 (58%), Gaps = 37/452 (8%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
+T T++F +G+ + ++ G+ +PT VQ+ CIP +++G DV+ A+TGSGKTA F
Sbjct: 277 STGGTISFKDIGVCPEIITMLRDKGITKPTEVQSGCIPAVIDGMDVVACAKTGSGKTATF 336
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL----GSGLHLRCEVVV--GGMDL 168
+PI+ L + AL+ITPTRELA+Q+ EQ L G+ L C V++ GG +
Sbjct: 337 LIPIIQSLMTELKPFYALIITPTRELAHQIGEQAAGLNLILGTSL---CNVLIITGGKSI 393
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLE------EDPDIPPV----FSRTKFLVLDEADRVL 218
+ Q L PH+V+ATPGR+ LL +DP P RT+ +VLDEADR+L
Sbjct: 394 VHQGIDLARGPHIVVATPGRLADLLRTQQANLDDPSNPSSTEWSLMRTRVVVLDEADRLL 453
Query: 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAY--------FYEAYE-- 268
+ F +L ++ LP+ RQTLLFSAT + ++T +E S +A ++ E
Sbjct: 454 EDNFGADLSLIMNALPERRQTLLFSATFSDAVKTAVEASKARALEQNKRPPLLWQPAEVI 513
Query: 269 -------GFKTVETLKQQYIFIPKNVKDVYLMHVLSK-MEDMGIRSAIIFVSTCRSCHLL 320
G TV+TL Q Y+ + K+ +L+H + + + + I+F + C+ CHL+
Sbjct: 514 GSSSSTVGASTVDTLSQFYLLMRPEHKEAFLVHTVDQFLTENPCSLIIVFTNKCKWCHLI 573
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
L++ L + V LHS Q +R+S+L F+S Q IL+ATD+ASRGLD PTVD+V+N++
Sbjct: 574 GLMMNSLGMKTVLLHSAMRQRERISSLTLFRSSQVRILIATDLASRGLDFPTVDIVINHN 633
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSD 440
+P P+DYVHRVGRTARAG+ GLA++ ++ + I+ +G+ L FE E++V
Sbjct: 634 VPIRPKDYVHRVGRTARAGKTGLALTLCDLFEIKRLRAIQEFIGRDLSPFEVNEKKVAKI 693
Query: 441 ITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IT V ARR A KL F+EK + K +K+
Sbjct: 694 ITEVSMARREAERKLDQIRFDEKREINKAKKV 725
>gi|82596351|ref|XP_726226.1| ATP-dependent RNA helicase [Plasmodium yoelii yoelii 17XNL]
gi|23481544|gb|EAA17791.1| putative ATP-dependent RNA helicase [Plasmodium yoelii yoelii]
Length = 492
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 159/447 (35%), Positives = 265/447 (59%), Gaps = 31/447 (6%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
S+ T+ +F LG+ +W ++ K + + +PT +Q C+P I+EGK+V+G ++TG+GKT
Sbjct: 64 SSDTNGPESFEELGIDDWLIKISKSVQIIKPTKIQKLCLPLIIEGKNVIGSSETGTGKTI 123
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
+ +L L ++ YG+ L+I PTREL +Q+ EQF G+ + ++ +GG L+ Q
Sbjct: 124 CYCWGMLQELNKNFYGIFGLIILPTRELVFQIVEQFHLYGNKIGIKILSCIGGFSLIEQR 183
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
++++N+PH+V+ TPGR+ +L++ D+ F R +FLVLDEAD +L FE++L+++
Sbjct: 184 RNILNKPHIVVGTPGRVSDILDDCIDVKNCFKRLRFLVLDEADLLLQKSFEDKLKIILSN 243
Query: 233 LPKN-----RQTLLFSATMTSDLQTLLELSAN-KAYFYEAYEGFKTVETLKQQYIFIPKN 286
+PK R+TL FS+T+T + L + N K +A + K ++ L Q+YI+I
Sbjct: 244 IPKETFGEPRRTLFFSSTITDSINLLNKTFPNDKLILVDANKKQKPLKNLDQRYIYIDSI 303
Query: 287 VKDVYLMHVL-SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV-ALHSFKSQSQRL 344
+ YL+++L +K+ DM S IIF + C L+ +L L +V ++HS K Q +R+
Sbjct: 304 AQITYLVYILKNKLIDM---SGIIFTANSYKCELIYNVLNSLGTFSVESIHSSKDQRKRM 360
Query: 345 SALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA 404
S+L RFK+G IL+ATD+ SRG+DIP V V+N+D P Y+HR+GRTARA R GL+
Sbjct: 361 SSLLRFKNGFCKILIATDIISRGIDIPKVAFVINFDFPNEIIQYIHRIGRTARANRKGLS 420
Query: 405 VSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
+SF+ + D+ + ++ + +L+ + + EVL+D+ ++ K + M
Sbjct: 421 ISFIDKKDLQSFNNVKIAMKNKLKPYILNKNEVLADMLKIGKVVKKVEM----------- 469
Query: 465 KERKKQKLKMLAEKGSLKKRSEKRKKS 491
ML EK +KK +E K S
Sbjct: 470 ---------MLQEKKDIKKENEDLKNS 487
>gi|322698392|gb|EFY90162.1| ATP-dependent RNA helicase DBP8 [Metarhizium acridum CQMa 102]
Length = 548
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 188/444 (42%), Positives = 264/444 (59%), Gaps = 18/444 (4%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+P TD +F+ L + W VQ+ + ++RPT +Q CIP+IL+G+D +G ++TGSG
Sbjct: 107 NPILAPTDPNTSFSSLNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSG 166
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KT AFA+PIL + AEDP + +V+TPTRELA Q+ EQFKA+ S L+ +V GG D+
Sbjct: 167 KTVAFAVPILQKWAEDPSAIFGVVLTPTRELALQIYEQFKAISSPQSLKAILVTGGSDMR 226
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLD-VGFEEELR 227
QA ++ RPHV+IATPGR+ + D R +F+VLDEADR+L G L
Sbjct: 227 AQAIAMAQRPHVIIATPGRLADHIRTSGEDTICGLRRVRFVVLDEADRLLHAAGPGSMLP 286
Query: 228 VVFQCL-----PKNRQTLLFSATMTSD---LQTLLELSANKAYFYEAYEG--FKTVETLK 277
V +CL RQTLLF+AT+T + L+T+ + + F + TL
Sbjct: 287 DVEECLSVLPPAAERQTLLFTATITPEVRALKTMPQKPGKQPVFVCEVDTQMLAIPATLH 346
Query: 278 QQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSF 337
Q +I IP K+ YL HV E ++ IIF + + L LL LD +LHS
Sbjct: 347 QTHIQIPITHKEHYL-HVFLLTEANKDKTIIIFCNRTATADYLHHLLRLLDHRVTSLHSK 405
Query: 338 KSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTAR 397
Q QR+ L RF++ A IL+ATDVA+RGLDIP V LV+NYDIPR P DY+HRVGRTAR
Sbjct: 406 LPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVVNYDIPRDPDDYIHRVGRTAR 465
Query: 398 AGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATM 453
AGR G + +FV Q DV+L+ IE VG+Q++ +E + E V+ D +V ++ +
Sbjct: 466 AGRTGESATFVGQRDVELVLAIENRVGRQMDAWEEEGVNLETRVIRDALKVVSEKKREAL 525
Query: 454 KLMDDGFEEKAKERKKQKLKMLAE 477
+++G E K RK+ K+K+ AE
Sbjct: 526 LEVEEGKEVGGK-RKRAKMKLRAE 548
>gi|389638890|ref|XP_003717078.1| ATP-dependent RNA helicase DBP8 [Magnaporthe oryzae 70-15]
gi|374095502|sp|A4R8G3.3|DBP8_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP8
gi|351642897|gb|EHA50759.1| ATP-dependent RNA helicase DBP8 [Magnaporthe oryzae 70-15]
Length = 579
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 189/439 (43%), Positives = 268/439 (61%), Gaps = 20/439 (4%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TF LG+ W VQ+ L ++RPT +Q CI +IL+G+D +G ++TGSGKT AFA
Sbjct: 144 TDQNTTFESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFA 203
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL + A+DP + A+V+T TRELA Q+ EQFKA+ S L+ +++GG D+ +QA +L
Sbjct: 204 VPILQKYAQDPSAIFAVVLTATRELALQIYEQFKAVSSPHVLKAALIIGGSDMRSQAIAL 263
Query: 176 MNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL 233
RP +VIATPGR+ + D R KFLVLDEADR+L G L + +C+
Sbjct: 264 AQRPSIVIATPGRLADHIRSSGEDTICGLRRVKFLVLDEADRLLSSKGPGSMLPHIDECM 323
Query: 234 -----PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQYIFI 283
P++RQTLLF+AT+T +++ L E+ + E + ++LKQ YI +
Sbjct: 324 AVLPPPEDRQTLLFTATVTPEVRALKEMPTRPGKEPVHVCEVDTQVLAIPDSLKQSYIQL 383
Query: 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQR 343
++ +L L + RS IIFV+ + L LL LD +LHS Q QR
Sbjct: 384 TVTHREHFLHEFLLTAANTE-RSIIIFVNRTSTAQFLHHLLRLLDHRVTSLHSKLRQQQR 442
Query: 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403
+ L RF++ A IL+ATDVASRGLDIP V +V+NYD+PR P DY+HRVGRTARAGR G
Sbjct: 443 IDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKGE 502
Query: 404 AVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITR-VYKARRVATMKLMDD 458
AV+FV Q DV+L+ IE VG+ +E++E + E V+ D + V + +R A + + ++
Sbjct: 503 AVNFVGQRDVELVLAIEKRVGRPMEKWEEEGVNLETRVIRDSLKLVSEKKREALLNIEEN 562
Query: 459 GFEEKAKERKKQKLKMLAE 477
E RK+QKLK+ AE
Sbjct: 563 --REVGGRRKRQKLKLGAE 579
>gi|367050892|ref|XP_003655825.1| hypothetical protein THITE_2119963 [Thielavia terrestris NRRL 8126]
gi|347003089|gb|AEO69489.1| hypothetical protein THITE_2119963 [Thielavia terrestris NRRL 8126]
Length = 577
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 192/468 (41%), Positives = 271/468 (57%), Gaps = 33/468 (7%)
Query: 23 SKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRR 82
S PEPQP+ EP + T P D+ TF LG+ W VQ+ + ++R
Sbjct: 124 SNPEPQPKAEPAPR---------VTAP------LDANTTFESLGVRPWLVQSLANMAIKR 168
Query: 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142
PT +Q IP +L+G+D +G ++TGSGKT AF++PIL + AE+P + +++TPTRELA
Sbjct: 169 PTAIQRESIPMLLKGRDCIGGSRTGSGKTVAFSVPILQKWAENPSAIFGVILTPTRELAL 228
Query: 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPP 201
Q+ EQ KA+ S L+ +V GG D+ +QA +L RPH+VIATPGR+ + D
Sbjct: 229 QIYEQIKAISSPHSLKAILVTGGSDMRSQAIALAQRPHIVIATPGRLADHIRTSGEDTVC 288
Query: 202 VFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTLLE 255
R +F+VLDEADR+L G L V +CL P RQTLLF+AT+T ++ L
Sbjct: 289 GLRRVRFVVLDEADRLLAANGPGSMLPDVEECLGALPPPAERQTLLFTATITPEVMALKS 348
Query: 256 L----SANKAYFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIF 310
+ + + E E TL Q ++ +P ++ YL L ++ +S IIF
Sbjct: 349 MPRQPGRDPVFVCEVDTENLAIPPTLNQMHLQVPVTHREHYLHMFLLTPANVD-KSVIIF 407
Query: 311 VSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370
+ + L LL LD ALHS Q QR+ L RF++ A IL+ATDVA+RGLDI
Sbjct: 408 CNRTSTADFLHHLLRLLDHRVTALHSKLPQRQRIDNLARFRASAARILVATDVAARGLDI 467
Query: 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430
P V LV+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DVDL+ IE VG+Q+E +
Sbjct: 468 PEVKLVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDLVLAIEKRVGRQMEAW 527
Query: 431 ECK----EQEVLSDITR-VYKARRVATMKLMDDGFEEKAKERKKQKLK 473
+ + E V+ D + V + +R A +++ + ++R KQKL+
Sbjct: 528 QEEGVNLETRVIRDALKLVGEKKREALLEVEEQREVGGKRKRGKQKLR 575
>gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 454
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 238/403 (59%), Gaps = 10/403 (2%)
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
R PTP+Q IP L G+DV+GLA TGSGKT AF +P+LH L ED + +V+ P+REL
Sbjct: 53 RHPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRIYCVVLAPSREL 112
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP 200
Q+AEQF+AL S + L+ V++GG+D++ QA +L RPHV++A+PGR+ +E
Sbjct: 113 CEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVASPGRLADHVENTKGFS 172
Query: 201 PVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANK 260
S K LV+DEADR+L F+EEL + +P RQT LFSATMT L L +++
Sbjct: 173 --LSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATMTKKLSKLQKMALKD 230
Query: 261 AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLL 320
+ + + T E L Q+++ +P+ K YL +L R+AI+F TC
Sbjct: 231 PISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWY---YATRTAIVFCKTCDGAQRC 287
Query: 321 SLLLEELDQEA---VALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377
+ L+ L V LH +Q+ R AL FK+G IL+AT+V RGLD+P V+LV+
Sbjct: 288 AAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVI 347
Query: 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQE 436
N+DIP +DY+HRVGRTARAGR GLA++ VTQ DV+L IE + K+LEEF + E
Sbjct: 348 NFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRIELALNKKLEEFTDLDEDT 407
Query: 437 VLSDITRVYKA-RRVATMKLMDDGFEEKAKERKKQKLKMLAEK 478
L+ ++ RRV + KL G K K + K A K
Sbjct: 408 ALAKHALCAESLRRVQSEKLNHKGRTNTNKRVSKFQAKYEAAK 450
>gi|148678591|gb|EDL10538.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Mus
musculus]
Length = 354
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 223/330 (67%), Gaps = 5/330 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 24 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 83
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 84 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 143
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 144 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 201
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 202 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 261
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 262 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 318
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
ILLATDVASRGLDIP VD+V+N+DIP + +
Sbjct: 319 ILLATDVASRGLDIPHVDVVVNFDIPTHSK 348
>gi|336271421|ref|XP_003350469.1| hypothetical protein SMAC_02182 [Sordaria macrospora k-hell]
gi|380090134|emb|CCC11960.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 615
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 193/484 (39%), Positives = 280/484 (57%), Gaps = 26/484 (5%)
Query: 12 PLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTT---DSTVTFAGLGLA 68
P+F S+ + K P+ E + A TT + P+P ST + D+ TF L +
Sbjct: 138 PVFNNVPSRIKKKQPEAPKTEKTEETAPTTPV-----PEPASTVSVPIDANTTFDALNVR 192
Query: 69 EWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG 128
W VQ+ + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + A +P
Sbjct: 193 PWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSA 252
Query: 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGR 188
+ L++TPTRELA Q+ EQ AL L+ ++ GG D+ QA L NRPH+VIATPGR
Sbjct: 253 IFGLILTPTRELALQIMEQVIALSQPHVLKAVLITGGSDMRKQAIDLANRPHLVIATPGR 312
Query: 189 IKVLLE-EDPDIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCL-----PKNRQTLL 241
+ + D R KF+VLDEADR+L + G L V +C P RQTLL
Sbjct: 313 LADHIRTSGEDTICGLRRVKFIVLDEADRLLANSGKGSMLPDVEECFSVLPPPSERQTLL 372
Query: 242 FSATMTSDLQTLLE---LSANKAYFYEAYEGFKTV--ETLKQQYIFIPKNVKDVYLMHVL 296
F+ATMT +++ L E + F + + TL+Q ++ +P ++ YL L
Sbjct: 373 FTATMTPEVKALSERPPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPVTHREHYLHMFL 432
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ +S IIF + + L LL LD +LHS QSQR+ L RF++ A
Sbjct: 433 LTPQNVD-KSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAAR 491
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATDVA+RGLDIP V +V+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DVDL+
Sbjct: 492 ILVATDVAARGLDIPEVKIVVNYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDLV 551
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITR-----VYKARRVATMKLMDDGFEEKAKERKKQK 471
IE VG+Q+E + + + + + R V + +R A +++ + ++R K+K
Sbjct: 552 LAIEQRVGRQMEAWTEEGVNLETRVIREALKVVGEKKREALLEIEEQKEVGGKRKRGKEK 611
Query: 472 LKML 475
L+ +
Sbjct: 612 LRAM 615
>gi|317143933|ref|XP_001819794.2| ATP-dependent RNA helicase dbp8 [Aspergillus oryzae RIB40]
Length = 523
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 180/432 (41%), Positives = 257/432 (59%), Gaps = 16/432 (3%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D +F L ++ W V + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AFA+
Sbjct: 90 DEESSFKALNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAV 149
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL + A+DP+G+ A+V+TPTRELA Q+ EQ KA+ + ++ ++ GG D+ +QA +L
Sbjct: 150 PILQKWAQDPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALS 209
Query: 177 NRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-- 233
RPHVVIATPGR+ + D R + +VLDEADR+L G L V CL
Sbjct: 210 QRPHVVIATPGRLADHINTSGEDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSA 269
Query: 234 ---PKNRQTLLFSATMTSDLQTLLEL--SANKAYFY----EAYEGFKTVETLKQQYIFIP 284
RQTLLF+AT+T +++ L + + NK + TLKQ Y+ +P
Sbjct: 270 LPPSSERQTLLFTATLTPEVRALKSMPRAENKPPVFVTEISTENNGAIPPTLKQTYLKVP 329
Query: 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRL 344
++ +L HVL E + AIIF + ++ LL +L L +LHS QS+R
Sbjct: 330 MTHREAFL-HVLLSTERNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERN 388
Query: 345 SALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA 404
S L RF++ A IL+ATDVASRGLDIP+V LV+N+D+PR P DYVHRVGRTARAGR G A
Sbjct: 389 SNLARFRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRHGEA 448
Query: 405 VSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
V+ V Q DV L+ IE V +++EE+ + + + R + V K G E+
Sbjct: 449 VTLVGQRDVQLVLAIEERVERRMEEWSEEGVSIEGRVVRGGVLKEVGEAKREASGEIEEG 508
Query: 465 KE---RKKQKLK 473
++ RK+ KLK
Sbjct: 509 RDVLGRKRNKLK 520
>gi|320585934|gb|EFW98613.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 572
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 188/439 (42%), Positives = 252/439 (57%), Gaps = 19/439 (4%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
T TD TF LG+ W VQ+ + + RPT +Q CIP IL G D +G ++TGSGKT A
Sbjct: 132 TPTDPNTTFGSLGVRPWLVQSLANMAIHRPTSIQKGCIPAILSGDDCIGGSRTGSGKTVA 191
Query: 114 FALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
FA+P+L A DP + ALV+TPTRELA Q+ EQF A+ + L+ +V GG D+ QA
Sbjct: 192 FAVPVLQAWATDPSAIFALVLTPTRELALQIYEQFLAISAPQPLKAVLVTGGADMRAQAT 251
Query: 174 SLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEE---LRVV 229
+L RPH+VIATPGR+ + D R +F+VLDEADR+L G E L V
Sbjct: 252 ALARRPHIVIATPGRLADHIRTSGEDTVCGLRRVRFVVLDEADRLLAGGEEGSGSMLPDV 311
Query: 230 FQCL-----PKNRQTLLFSATMTSD---LQTLLELSANKAYFYEAYE--GFKTVETLKQQ 279
+CL P RQTLLF+AT+T + L+T+ F E TL+Q
Sbjct: 312 EECLGALPPPGKRQTLLFTATVTPEVRALKTMPRAPGRPPVFVCEVETQAPAIPTTLRQL 371
Query: 280 YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
Y+ +P ++ YL LS + + + IIF + + L LL L ALH
Sbjct: 372 YLDVPVTHREHYLHVFLSTTHNEALPAVIIFCNRTATAAYLHHLLRLLGHRVTALHGKLP 431
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
Q QR L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAG
Sbjct: 432 QRQRTDNLGRFRAAAARILVATDVAARGLDIPDVALVVNYDVPRQPDDYIHRVGRTARAG 491
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKL 455
R G AV+FV Q DVDL+ IEA VG+ +E ++ + E VL D +V ++ +
Sbjct: 492 RTGEAVTFVGQRDVDLVLAIEARVGRPMELWQEEGVNLETRVLRDALKVVSEKKREALLE 551
Query: 456 MDDGFEEKAK-ERKKQKLK 473
+++ E K +R QKL+
Sbjct: 552 IEENREVGGKRKRGMQKLR 570
>gi|145538955|ref|XP_001455172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422971|emb|CAK87775.1| unnamed protein product [Paramecium tetraurelia]
Length = 431
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/405 (41%), Positives = 254/405 (62%), Gaps = 9/405 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL +W ++ C ++ + P P+Q IP +L+GK+VL +QTGSGKTAAF+ PIL
Sbjct: 9 FEELGLDQWLLKLCWKIDYKEPRPIQVLSIPPLLQGKNVLISSQTGSGKTAAFSFPILQT 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L++DPYG+ A+++T RELA Q+AEQ + G+ ++LR +++GG+ Q K L PH+
Sbjct: 69 LSQDPYGIFAIILTANRELAVQIAEQIQIFGASVNLRLALLIGGLSSQKQVKLLGQIPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF-QCLPKNRQTL 240
+I TPGR LL D + K+ +LDE DR+L+ ++++ V+ QC ++ Q
Sbjct: 129 IIGTPGRCAELLSIDVNFQKYIKNVKYFILDEVDRLLEPQIWDDIKQVYEQC--ESPQIA 186
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEG--FKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
L SAT+ + Q L + AN F E K ET+K +++ +P VKD Y +H++ K
Sbjct: 187 LVSATLNNVTQQLKDEFAN-VKFVECINNPEQKVSETIKHKFVLMPDLVKDYYFIHLMKK 245
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+E S I+F TCR CH L+ LL + ++ LHS Q +R+S L ++S + +L
Sbjct: 246 LEGA---STIVFAPTCRKCHELNELLNHFEIKSTCLHSMLPQHERISNLRAYRSQKTQVL 302
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP V V+N+++P+ DY+HRVGRT RAGR G A++ +TQ DV+ I
Sbjct: 303 VATDVASRGLDIPNVKFVINWNVPKVEADYIHRVGRTGRAGRRGTAITMMTQFDVERILA 362
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++ +LEE + E++VLS++T V KA + +K+ DG EK
Sbjct: 363 IENLINLRLEEIKFNEEKVLSNMTEVTKAIKTIKIKMQQDGTTEK 407
>gi|398398659|ref|XP_003852787.1| ATP-dependent RNA helicase dbp8 [Zymoseptoria tritici IPO323]
gi|339472668|gb|EGP87763.1| hypothetical protein MYCGRDRAFT_92934 [Zymoseptoria tritici IPO323]
Length = 503
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 235/395 (59%), Gaps = 13/395 (3%)
Query: 49 PDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGS 108
P T D+ +F +G+ W + + L ++ PT +Q CIP+IL G+D +G ++TGS
Sbjct: 60 PTAIQATLDAKSSFKSIGVDPWLIASLSHLSIKFPTRIQKACIPEILAGRDCIGGSRTGS 119
Query: 109 GKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
GKT AF LPIL + A P G+ ALV+TPTRELA Q+ EQF+A+G G ++C +V GG +
Sbjct: 120 GKTIAFGLPILQQWARQPSGIFALVLTPTRELALQIYEQFQAIGGGQGIKCVLVTGGAHM 179
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFE---- 223
QA L RPH+VIATPGR+ + D + KF+VLDEADR+L +
Sbjct: 180 RNQALELAKRPHIVIATPGRLADHISSSGEDTIYGLRKCKFVVLDEADRLLASSKKGSML 239
Query: 224 EELRVVFQCLP--KNRQTLLFSATMTSDLQTLLEL----SANKAYFYEA-YEGFKTVETL 276
++ LP +RQT LF+AT+T +++ L S + E + +TL
Sbjct: 240 PDVETCMSILPPASSRQTCLFTATITPEVRALKSAPRSPSRPPVFISEVDVDSLAIPDTL 299
Query: 277 KQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHS 336
Q Y + K+ YL H+L + ++ IIF + + +LL L L ALHS
Sbjct: 300 TQTYQLVNVLHKEKYL-HILLLTPENVTKTTIIFTNRTETANLLEHTLRLLTHRVTALHS 358
Query: 337 FKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTA 396
QR S L RF++G A IL+ATDVASRGLD+P V LV+NYDIPR P DY+HRVGRTA
Sbjct: 359 ALPHEQRTSNLARFRAGAARILVATDVASRGLDVPDVGLVINYDIPRNPDDYIHRVGRTA 418
Query: 397 RAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431
RAGR GL++S V Q DV+L+ IEA VG+++E FE
Sbjct: 419 RAGRKGLSISLVGQRDVELVQGIEARVGRKMEVFE 453
>gi|399217362|emb|CCF74249.1| unnamed protein product [Babesia microti strain RI]
Length = 394
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 166/410 (40%), Positives = 237/410 (57%), Gaps = 20/410 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ + C+ LG + PT +Q IP LEG SGKTAAF LP+L
Sbjct: 4 TFAELGICPELCEACESLGWKTPTAIQIATIPPALEG----------SGKTAAFVLPVLQ 53
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P + + + PTREL Q++EQFKALG+ + L ++GG+D+ +QA +L RPH
Sbjct: 54 SLLETPSRLFCVALAPTRELCAQISEQFKALGANIALEVATILGGLDMNSQAMALSKRPH 113
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
V++A+PGR+ +E +KFL+LDEADR+L + F++ L + + +P+ RQT
Sbjct: 114 VIVASPGRLSDHIENTKGF--FLKSSKFLILDEADRILSMDFDDALNNIIKAMPEERQTF 171
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMTS + L + S YE + TV L+Q + P K + ++ K
Sbjct: 172 LFSATMTSKVSKLQKASLKNPVRYEIGGKYDTVSGLEQNFYLCPFKYKWTVITLLVEKFT 231
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
I+F +TC + LS L+ L + LH SQ RLSAL+ FK+G + IL+
Sbjct: 232 SC---VTIVFCNTCSTARKLSFYLDNLTHKTTCLHGKMSQPLRLSALNNFKAGSSNILVT 288
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
T+V SRGLDIP+VDLV+N+D+P+ +DY+HRVGRTARAGR G A++ VTQ DV+ +E
Sbjct: 289 TEVGSRGLDIPSVDLVVNFDVPQSGKDYIHRVGRTARAGRSGQAITLVTQYDVEAFQRVE 348
Query: 421 AVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+G +L+ F E E +++S +A+R K E K RKK
Sbjct: 349 FALGIKLKPFDEFSEAQIMSKHELCSQAKR----KAESTAAESPLKHRKK 394
>gi|378725819|gb|EHY52278.1| hypothetical protein HMPREF1120_00492 [Exophiala dermatitidis
NIH/UT8656]
Length = 550
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 184/449 (40%), Positives = 265/449 (59%), Gaps = 39/449 (8%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
++ TF L +A W V + + ++ PT +Q CIP+IL+G+D +G ++TG+GKT AFA+P
Sbjct: 98 TSTTFQALNVAPWLVHSLAAMAIQHPTEIQRACIPEILKGRDCIGGSRTGTGKTVAFAVP 157
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL + AEDP+G+ A+V+TPTRELA Q+ EQF+ALG+ +L+ ++ GG D+ QA +L
Sbjct: 158 ILQKWAEDPFGIYAVVLTPTRELALQIFEQFQALGTPQNLKTVLITGGTDMRPQAIALSR 217
Query: 178 RPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCL 233
RPH+V+ATPGR+ +L D SR K +VLDEADR+L G +L L
Sbjct: 218 RPHIVVATPGRLADHILNSGQDTVGGLSRVKVVVLDEADRLLAPGRGSMLPDLNTCLSAL 277
Query: 234 P--KNRQTLLFSATMTSDLQTLLELSANK-------AYFYEAYEGFKTV----ETLKQQY 280
P +R TLLF+AT+T +++ L +L K + +A + TL Q Y
Sbjct: 278 PPSSSRLTLLFTATVTPEVRALQDLPRPKDRPPIFVSEITDAADPSSVTSLIPSTLSQTY 337
Query: 281 IFIPKNVKDVYLMHVL---SKMED------MGIR-SAIIFVSTCRSCHLLSLLLEELDQE 330
+ IP KD +L HVL + D +G+ S I+FV+ + L L +L
Sbjct: 338 LQIPMTHKDAFL-HVLLLVPSLADPKAGGELGLSPSIIVFVNRTTTADTLHRTLLQLGHP 396
Query: 331 AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVH 390
ALHS +Q QR L F++ +A IL+ATDVASRGLDIP V+ V+N+D+PR P DYVH
Sbjct: 397 VTALHSDLAQIQRTRNLADFRARKARILIATDVASRGLDIPDVEYVINFDVPRNPTDYVH 456
Query: 391 RVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR-- 448
RVGRTARAGR G +++FV Q DV LI IE VG ++ E+ +E ++ TRV K R
Sbjct: 457 RVGRTARAGRKGTSITFVGQRDVALILAIEDYVGVKMAEW---SEEGVNVETRVVKGRTL 513
Query: 449 ------RVATMKLMDDGFEEKAKERKKQK 471
R+ ++ ++ G + RK +K
Sbjct: 514 KDVAEARMEALRDLESGKDVNGWRRKLKK 542
>gi|367026946|ref|XP_003662757.1| hypothetical protein MYCTH_115944 [Myceliophthora thermophila ATCC
42464]
gi|347010026|gb|AEO57512.1| hypothetical protein MYCTH_115944 [Myceliophthora thermophila ATCC
42464]
Length = 515
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 275/477 (57%), Gaps = 34/477 (7%)
Query: 15 AKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQT 74
A+ KS ++P PEPEP S+ T P D+ TF LGL W VQ+
Sbjct: 55 AENKSAEAARPS-DPEPEPTSR---------VTAP------LDANTTFESLGLRPWLVQS 98
Query: 75 CKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134
+ ++RPT +Q IP +L+G+D +G ++TGSGKT AFA+PIL + AE+P + A+++
Sbjct: 99 LANMAIKRPTAIQRESIPMLLKGRDCIGGSRTGSGKTVAFAVPILQKWAENPSAIFAVIL 158
Query: 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE 194
TPTRELA Q+ EQ KA+ + L+ +V GG D+ +QA +L RPHVVIATPGR+ +
Sbjct: 159 TPTRELALQIYEQIKAISAPHSLKAILVTGGADMRSQAIALAQRPHVVIATPGRLADHIR 218
Query: 195 -EDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL-----PKNRQTLLFSATMT 247
D R +F+VLDEADR+L G L V +CL P RQTLLF+AT+T
Sbjct: 219 TSGEDTICGLRRVRFVVLDEADRLLAANGPGSMLPDVEECLGALPPPAERQTLLFTATIT 278
Query: 248 SDLQTLLEL----SANKAYFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDM 302
++ L + + + E E TL Q ++ +P ++ YL H+
Sbjct: 279 PEVMALKSMPRPPGRDPVFVCEVDTENLAIPPTLNQMHLQVPVTHREHYL-HIFLLTPAN 337
Query: 303 GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362
+S IIF + + L LL LD +LHS Q QR+ L RF++ A IL+ATD
Sbjct: 338 VEKSVIIFCNRTTTADFLHHLLRLLDHRVTSLHSRLPQRQRIDNLARFRASAARILVATD 397
Query: 363 VASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAV 422
VA+RGLDIP V LV+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DV+L+ IE
Sbjct: 398 VAARGLDIPEVKLVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVELVLAIEKR 457
Query: 423 VGKQLEEFECK----EQEVLSDITR-VYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
VG+Q+E + + E V+ D + V + +R A ++L + ++R KQKL++
Sbjct: 458 VGRQMEAWHEEGVNLETRVVRDALKLVGEKKREALLELEEQREVGGKRKRGKQKLRL 514
>gi|406864929|gb|EKD17972.1| ATP-dependent RNA helicase DBP8 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 872
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 172/392 (43%), Positives = 239/392 (60%), Gaps = 15/392 (3%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
S + D +FA L + W V + + + RPT +Q CIP+IL+G+D +G ++TGSGKT
Sbjct: 106 SVSVDRQTSFASLDVKPWLVGALERMAINRPTGIQKGCIPEILKGRDCIGGSRTGSGKTV 165
Query: 113 AFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
AFA+PIL AEDP+G+ A+V+TPTRELA Q+ EQ KA+ S L+ ++ GG D+ QA
Sbjct: 166 AFAVPILQTWAEDPFGIFAVVLTPTRELALQIYEQIKAISSPQQLKAVLITGGSDMRPQA 225
Query: 173 KSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVF 230
+L RPH+VIATPGR+ + D R + +VLDEADR+L G L V
Sbjct: 226 TALAQRPHIVIATPGRLADHIRTSGEDTICGLRRVRMVVLDEADRLLASGSVGSMLPDVE 285
Query: 231 QCL-----PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQY 280
+C P RQTLLF+AT+T +++ L ++ + E + L+Q +
Sbjct: 286 ECFSILPSPAKRQTLLFTATITPEVRALKDMPRTPGKPPVFVCEVDTQKLAIPAQLRQMH 345
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
+ +P ++ YL L + D+ + +S IIF + + L+ LL L+ ALHS
Sbjct: 346 LQVPVTHREHYLHMFL--LTDVNLQKSVIIFCNRTATADYLTHLLRLLEHRVTALHSKLP 403
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
Q QR+ L RF++ A IL+ATDVA+RGLDIP V LV+NYDIPR P DY+HRVGRTARAG
Sbjct: 404 QRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAG 463
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431
R G AV+FV Q DV L+ IE VG++LE +E
Sbjct: 464 RKGDAVTFVGQRDVQLVQAIEGRVGRELERWE 495
>gi|406603762|emb|CCH44787.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 435
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 170/440 (38%), Positives = 258/440 (58%), Gaps = 19/440 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F +G++ W ++ + + PT +Q C D +G A+TGSGKT AF P+L +
Sbjct: 4 FKSIGVSRWLSESLNAMRIYTPTAIQKAC-------HDCIGGAKTGSGKTIAFGAPMLTK 56
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ LV+TPTRELA Q+AEQF ALG+ +++R V+VGG ++ QA L +PH
Sbjct: 57 WSEDPMGIFGLVLTPTRELALQIAEQFAALGAAMNIRIAVIVGGESMVEQAIKLQGKPHF 116
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK--NRQ 238
VIATPGR+ +L D R ++LVLDEADR+L F +L+ F LP RQ
Sbjct: 117 VIATPGRLADHILNSGEDTIEGLKRVRYLVLDEADRLLSNSFGSDLQRCFSILPSADKRQ 176
Query: 239 TLLFSATMTSDLQTLLE--LSANKAYFY----EAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T ++ L + NK + ++ + L+ ++ +P VK+ YL
Sbjct: 177 TLLFTATVTDAVRALKDRPTPTNKPKLFIHEVDSVDKVAIPSQLETYFMLVPSYVKESYL 236
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+LS ED ++A++FV+ + ++ L L+ +LHS Q +R ++LHRF++
Sbjct: 237 YSILSH-EDNEKKTAMVFVNRTHTAEVVRRTLRNLEIRVASLHSELPQQERTNSLHRFRA 295
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A +L+ATDVASRGLDIP V+LV+NYDIP P D+VHRVGRTARAGR G +S V++ D
Sbjct: 296 NAARVLIATDVASRGLDIPDVELVINYDIPADPDDFVHRVGRTARAGRKGQTISLVSEKD 355
Query: 413 VDLIHEIEAVVGKQLEEFE--CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE + K+L+++E + + + V A+R A ++ + F E+ + K++
Sbjct: 356 VSRIQAIEERINKKLDKYEKITDNKVIKKSLQSVSIAKREAEAEMSKEEFGERKRTIKRK 415
Query: 471 KLKMLAEKGSLKKRSEKRKK 490
K + +KK K +K
Sbjct: 416 SQKDDSSNYKIKKPKNKSRK 435
>gi|396493590|ref|XP_003844093.1| similar to ATP-dependent RNA helicase dbp8 [Leptosphaeria maculans
JN3]
gi|312220673|emb|CBY00614.1| similar to ATP-dependent RNA helicase dbp8 [Leptosphaeria maculans
JN3]
Length = 505
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 191/486 (39%), Positives = 276/486 (56%), Gaps = 21/486 (4%)
Query: 2 DEQILLDRNFPLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNP------DPNSTT 55
DE IL + + S T ++ +P P KT Q T P + +
Sbjct: 12 DEDILESQAGSRKRRRLSPTNAESDPAPVQTSTISRIKTKQQNSTTQPVVQASTTTGTAS 71
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T + FA L +A W V + + +++PT +Q CIP+IL+G+D +G ++TG+GKT AF+
Sbjct: 72 TKEKLDFASLDVAPWLVASLASMEIKKPTGIQQACIPEILKGRDCIGGSRTGTGKTVAFS 131
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL + AEDP G+ L+ITPTRELA Q+ EQ KA+ + ++ +V GG D QA +L
Sbjct: 132 VPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIAL 191
Query: 176 MNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL- 233
+RPH+VIATPGR+ + + D R +F+V DEADR+L G L + CL
Sbjct: 192 ASRPHIVIATPGRLAEHIRTSGEDTICGLRRVRFVVFDEADRLLAPGKGSMLPDLETCLS 251
Query: 234 ---PK-NRQTLLFSATMTSDLQTLLELSANK---AYFYEA-YEGFKTVETLKQQYIFIPK 285
PK RQTLLF+AT+T ++ L + + E E L+Q+Y+ P
Sbjct: 252 VLPPKEKRQTLLFTATVTQEVLALKDQPRPGRLPIFISEVDTETLAIPPKLQQKYLQTPV 311
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
K+ YL +L+ E++ +S IIF + ++ LL +L L+ ALHS QS R+
Sbjct: 312 THKECYLHVLLNTPENLK-KSVIIFCNRTKTATLLEYMLRLLEHRVTALHSGLKQSDRVG 370
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
L RF++ A IL+ATDVA+RGLDIP V LV+NYD+PR P DY+HRVGRTARAGR G ++
Sbjct: 371 NLARFRAQAARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRVGTSI 430
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEFE----CKEQEVLSDITRVYKARRVATMKLMDDGFE 461
+ V Q DV+LI IE VGK++EEFE E V+ D R ++ M +++G +
Sbjct: 431 TLVGQRDVELILAIETRVGKKMEEFEEEGVSVEGRVVRDALRPVTEKKREAMLSIEEGRD 490
Query: 462 EKAKER 467
K +
Sbjct: 491 VMGKRK 496
>gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818]
Length = 2578
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 245/426 (57%), Gaps = 16/426 (3%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
GL E Q C+++G RRPTPVQ IP LEGKD++G+A+TGSGKTAAFALP++H L
Sbjct: 2160 GLEEVLCQACEDVGYRRPTPVQEAAIPPALEGKDIVGIAKTGSGKTAAFALPVMHSLINA 2219
Query: 126 ---PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVV 182
ALV+ PTRELA Q+ +FKALG+ + L+ ++VGG+ L Q L PHV+
Sbjct: 2220 RPRERRFHALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRLSQNPHVL 2279
Query: 183 IATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLF 242
IATPGRI LE + KFL+LDEADR+L FE E+ + +PK R LF
Sbjct: 2280 IATPGRILHHLERTNGFK--LNNVKFLILDEADRMLTPEFEREIDQLLGHIPKRRTNFLF 2337
Query: 243 SATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDM 302
SAT ++ L+ + KTV+TL Q +F+P K+ YL+ L +
Sbjct: 2338 SATSNDKVKHLMHAVLRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLVWFLQRQGLQ 2397
Query: 303 GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362
S IIF T R+ L L+L +L A LH SQ +R+ AL RFK+ + +L+ T+
Sbjct: 2398 ADSSVIIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNVLVCTN 2457
Query: 363 VASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAV 422
V +RGLDI V+LV+NYD+P+ Y+HRVGRTARAGR G AV+FVTQ DV EIEA
Sbjct: 2458 VGARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQYDVPYFKEIEAG 2517
Query: 423 VGKQLE----EFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEK 478
VG L + ECKE D +A R AT ++ + E + + ++ K +
Sbjct: 2518 VGLDLPVRKYDKECKELYAEID-----EASRYATREMKE--IEAETRTKRGGKRQAGGGN 2570
Query: 479 GSLKKR 484
G KK+
Sbjct: 2571 GRFKKK 2576
>gi|224001104|ref|XP_002290224.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220973646|gb|EED91976.1| RNA helicase, partial [Thalassiosira pseudonana CCMP1335]
Length = 471
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 198/437 (45%), Positives = 266/437 (60%), Gaps = 37/437 (8%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILE-----GKDVLGLAQTGSGKTAAFA 115
TFA LGL VQTC++LG RPT VQ+ IP IL +L L+ TGSGKTAAFA
Sbjct: 1 TFADLGLCPPLVQTCRKLGFARPTAVQSAIIPLILNPTSSSNHHLLTLSATGSGKTAAFA 60
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG--LHLRCEVVVGGMDLLTQAK 173
LP+LH L+ DPYG+ AL++TPTRELA Q+ +Q ALGSG + C +++GG DL Q+
Sbjct: 61 LPLLHLLSSDPYGIYALILTPTRELAKQIQQQILALGSGSGWKITCALIIGGEDLTKQSL 120
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPD---IPPVFSRTKFLVLDEADRVLDV--GFEEEL-R 227
L +P+ +ATPGR+ L + P F + +F+VLDEADR+L GFE ++
Sbjct: 121 ELSRQPNFCVATPGRLAELCRDGDGGGLYRPNFKKVRFVVLDEADRLLSARSGFERDVAE 180
Query: 228 VVFQCLPKNRQ---------------TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKT 272
V+ Q K + TLLFSATMT L++L +++ +
Sbjct: 181 VLLQSTTKIERSGSGDGKRARRNMCRTLLFSATMTRSLKSLEDMAGAGVGRLPLMKVVDE 240
Query: 273 VET------LKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326
T L+Q+YIF+P V++ YL++ SK +SAIIFV TC +S +L E
Sbjct: 241 NSTPNLPAGLRQEYIFMPSRVREAYLLNGKSKYPLA--QSAIIFVPTCERAAHISGILTE 298
Query: 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
L VALHS SQ++RL++L F+S + +L+ATDVASRGLD+P VDLVLN ++PR
Sbjct: 299 LGIHNVALHSLLSQNRRLASLGTFQSQRVRVLVATDVASRGLDVPEVDLVLNAELPRRAV 358
Query: 387 DYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEE-FECKEQEVLSDITRVY 445
DYVHRVGRTARAGR G AVS V + DVDL+HE E + G++LE+ E + + + V
Sbjct: 359 DYVHRVGRTARAGRRGRAVSLVGEQDVDLVHEAEKISGRKLEKCVEVTDDMAVRLLGPVA 418
Query: 446 KARRVATMKLMDDGFEE 462
KA R+ MKLMD GF+E
Sbjct: 419 KASRLTKMKLMDIGFDE 435
>gi|71747632|ref|XP_822871.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832539|gb|EAN78043.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 512
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 250/416 (60%), Gaps = 10/416 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTF LGL E + CKE G R PT +Q IP + EG+D++G+AQTGSGKT A+ LP++
Sbjct: 40 VTFKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLV 99
Query: 120 HRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ L A+ PY + LV+ PTRELA Q+A QF LGS + LR +VGG D++ QA L
Sbjct: 100 NWLLTQAKVPY-LSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELS 158
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
RPHVV+ TPGR+K L V + LVLDEAD++L++ +E+E+ + + LP N
Sbjct: 159 RRPHVVVGTPGRVKDHLNNTKGFQLV--KLHALVLDEADKMLEMDYEKEINAILEHLPHN 216
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTLLFSAT+++ + L S N E + TV+TLKQ Y+F P YL L
Sbjct: 217 RQTLLFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQMLPYLHLYL 276
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
++ I ++F + H ++L L L +A+ L Q R AL +FK G+
Sbjct: 277 TRESGNHI---LVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVR 333
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ TDVA RGLDIP D+V+N+ +P DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 334 ILVCTDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLL 393
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
++EA G + EE+ + +V + + RV A + A +K M + +E ER+ ++L
Sbjct: 394 QKVEASTGVKCEEWPISDGDVAAVLQRVEDAEQEA-VKEMRESDQEAKFEREARQL 448
>gi|406696099|gb|EKC99395.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 436
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 244/398 (61%), Gaps = 34/398 (8%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+++ ++C+ LG + PT +Q IP L G+D++G+AQTGS
Sbjct: 25 TFADLGVSKELCESCESLGFKHPTDIQVAAIPPALTGRDIIGIAQTGSA----------- 73
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ P + +A+Q +ALG+ + +R V+VGGMD+++Q+ +L RPH
Sbjct: 74 ----------VLLAHPRSD---SIAKQVQALGAPIGVRTAVIVGGMDMMSQSIALSKRPH 120
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LVLDEADR+LD+ F + + + +PK R T
Sbjct: 121 IIVATPGRLMDHLENTKGFS--LKALKYLVLDEADRLLDLDFGPIIDKLLKVIPKERNTF 178
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSAT+++ ++ L S NK + + TV TL Q Y+F P+ KD YL ++++++
Sbjct: 179 LFSATLSTKVEKLKRASLNKPIQVKVDSKYSTVSTLMQYYVFFPEVQKDAYLFYLVNELS 238
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S IIF ST LS++L L A+ LH SQS RL +L++FKSG IL+A
Sbjct: 239 S---SSMIIFTSTVDRAQRLSIMLNRLGYPAIPLHGQMSQSARLGSLNKFKSGGRKILVA 295
Query: 361 TDVASRGLDIPTVDLVL-NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDVASRGLDIP+VDLV+ N+DIP +DYVHRVGRTARAGR G +++ VTQ DV ++ I
Sbjct: 296 TDVASRGLDIPSVDLVIQNFDIPSNSKDYVHRVGRTARAGRSGKSITLVTQYDVVMLKGI 355
Query: 420 EAVVGKQLEEFECKEQEV--LSDITRVYKARRVATMKL 455
EA +G+QL F+C ++ V LSD RV +A R A +++
Sbjct: 356 EAAIGRQLPAFDCDKEAVAILSD--RVNEAARAARIEM 391
>gi|346975912|gb|EGY19364.1| ATP-dependent RNA helicase dbp8 [Verticillium dahliae VdLs.17]
Length = 551
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 272/475 (57%), Gaps = 31/475 (6%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKE 77
K T + P +PEP K P + D TF+ L + W Q+
Sbjct: 87 KKTTTATPSSRPEP-------------KLPAPAGITAPVDPDTTFSSLNVRPWLTQSLAN 133
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
+ ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + AEDP + LV+TPT
Sbjct: 134 MAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPSAIYGLVLTPT 193
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-ED 196
RELA Q+ EQFKA+GS L+ ++ GG D+ QA +L +RPHVVIATPGR+ +
Sbjct: 194 RELALQIFEQFKAIGSPQGLKVTLITGGNDMRPQAIALASRPHVVIATPGRLADHIRTSG 253
Query: 197 PDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCL-----PKNRQTLLFSATMTSDL 250
D R +F+VLDEADR+LD G L V +CL P RQTLLF+AT+T ++
Sbjct: 254 EDTICGLRRIRFVVLDEADRLLDGTGTGSMLPAVEECLSALPPPAQRQTLLFTATITPEV 313
Query: 251 QTLLELSANKA----YFYEAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
+ L ++ + E + TL Q++I +P ++ YL L ++ +
Sbjct: 314 RALKDMPPKPGKEPVFICEVDTQMLAIPATLAQKHIQVPVTHREHYLHTFLLTAANVD-K 372
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
+ I+F + + L LL LD +LHS Q QR L RF++ A IL+ATDVAS
Sbjct: 373 TVIVFCNRTTTAQFLHHLLRLLDHRVTSLHSRLPQRQRTDNLARFRAAAARILVATDVAS 432
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP V LV+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DV+L+ IEA VG+
Sbjct: 433 RGLDIPEVALVVNYDIPRDPDDYIHRVGRTARAGRKGEAVTFVGQRDVELVLAIEARVGR 492
Query: 426 QL----EEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
++ EE E V+ D ++ ++ + M++ E K RK+ K K+ A
Sbjct: 493 KMDAWTEEGVNLETRVVRDTLKIVGEKKREALLEMEENKEVGGK-RKRTKTKLRA 546
>gi|336469302|gb|EGO57464.1| hypothetical protein NEUTE1DRAFT_129408 [Neurospora tetrasperma
FGSC 2508]
gi|350291064|gb|EGZ72278.1| ATP-dependent RNA helicase dbp-8 [Neurospora tetrasperma FGSC 2509]
Length = 620
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 195/485 (40%), Positives = 280/485 (57%), Gaps = 28/485 (5%)
Query: 12 PLFAKPKSKTRSKPEPQPE-PEPESKNAKTTQLEKFTNPDPNSTTT---DSTVTFAGLGL 67
P+F S+ + K QPE P+ E T L P+P ST + D+ TF L +
Sbjct: 143 PVFNNVPSRIKKK---QPEAPKTEKTEEATPALPV---PEPASTVSVPIDANTTFDALNV 196
Query: 68 AEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY 127
W VQ+ + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + A +P
Sbjct: 197 RPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPS 256
Query: 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPG 187
+ +++TPTRELA Q+ EQ AL L+ ++ GG D+ QA L RPH+VIATPG
Sbjct: 257 AIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIATPG 316
Query: 188 RIKVLLE-EDPDIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCL-----PKNRQTL 240
R+ + D R KF+VLDEADR+L + G L V +C P RQTL
Sbjct: 317 RLADHIRTSGEDTICGLRRVKFIVLDEADRLLANSGHGSMLPDVEECFSVLPPPSERQTL 376
Query: 241 LFSATMTSDLQTLLE---LSANKAYFYEAYEGFKTV--ETLKQQYIFIPKNVKDVYLMHV 295
LF+ATMT +++ L E + F + + TL+Q ++ +P ++ YL
Sbjct: 377 LFTATMTPEVKALSERPPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPVTHREHYLHMF 436
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L +++ +S IIF + + L LL LD +LHS QSQR+ L RF++ A
Sbjct: 437 LLTPQNVD-KSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAA 495
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP V +V+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DVDL
Sbjct: 496 RILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDL 555
Query: 416 IHEIEAVVGKQLEEFECK----EQEVLSDITRVY-KARRVATMKLMDDGFEEKAKERKKQ 470
+ IE VG+Q+E + + E V+ D +V + +R A +++ + ++R K+
Sbjct: 556 VLAIEQRVGRQMEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEEQKEVGGKRKRGKE 615
Query: 471 KLKML 475
KL+ +
Sbjct: 616 KLRAM 620
>gi|302417318|ref|XP_003006490.1| ATP-dependent RNA helicase dbp8 [Verticillium albo-atrum VaMs.102]
gi|261354092|gb|EEY16520.1| ATP-dependent RNA helicase dbp8 [Verticillium albo-atrum VaMs.102]
Length = 551
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 272/475 (57%), Gaps = 31/475 (6%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKE 77
K T + P +PEP K + P + D TF+ L + W Q+
Sbjct: 87 KKTTTATPSSRPEP-------------KLSAPAGITAPVDPDTTFSSLNVRPWLTQSLAN 133
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
+ ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + AEDP + LV+TPT
Sbjct: 134 MAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPSAIYGLVLTPT 193
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-ED 196
RELA Q+ EQFKA+GS L+ ++ GG D+ QA +L +RPHVVIATPGR+ +
Sbjct: 194 RELALQIFEQFKAIGSPQGLKVTLITGGNDMRPQAIALASRPHVVIATPGRLADHIRTSG 253
Query: 197 PDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCL-----PKNRQTLLFSATMTSDL 250
D R +F+VLDEADR+LD G L V +CL P RQTLLF+AT+T ++
Sbjct: 254 EDTICGLRRIRFVVLDEADRLLDGTGTGSMLPAVEECLSALPPPAQRQTLLFTATITPEV 313
Query: 251 QTLLELSANKA----YFYEAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
+ L ++ + E + TL Q++I +P ++ YL L ++ +
Sbjct: 314 RALKDMPPKPGKEPVFICEVDTQMLAIPTTLAQKHIQVPVTHREHYLHTFLLTAANVE-K 372
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
+ I+F + + L LL LD +LHS Q QR L RF++ A IL+ATDVAS
Sbjct: 373 TVIVFCNRTTTAQFLHHLLRLLDHRVTSLHSRLPQRQRTDNLARFRAAAARILVATDVAS 432
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP V LV+NYDIPR P DY+HRVGRTARAGR G AV+FV Q DV+L+ IEA VG+
Sbjct: 433 RGLDIPEVALVVNYDIPRDPDDYIHRVGRTARAGRKGEAVTFVGQRDVELVLAIEARVGR 492
Query: 426 QL----EEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
+ EE E V+ D ++ ++ + M++ E K RK+ K K+ A
Sbjct: 493 TMDAWTEEGVNLETRVVRDTLKIVGEKKREALLEMEENKEVGGK-RKRTKTKLRA 546
>gi|261332683|emb|CBH15678.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 512
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 250/416 (60%), Gaps = 10/416 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTF LGL E + CKE G R PT +Q IP + EG+D++G+AQTGSGKT A+ LP++
Sbjct: 40 VTFKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLV 99
Query: 120 HRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ L A+ PY + LV+ PTRELA Q+A QF LGS + LR +VGG D++ QA L
Sbjct: 100 NWLLTQAKVPY-LSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELS 158
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
RPHVV+ TPGR+K L V + LVLDEAD++L++ +E+E+ + + LP N
Sbjct: 159 RRPHVVVGTPGRVKDHLNNTKGFQLV--KLHALVLDEADKMLEMDYEKEINAILEHLPHN 216
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTLLFSAT+++ + L S N E + TV+TLKQ Y+F P YL L
Sbjct: 217 RQTLLFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQMLPYLHLYL 276
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
++ I ++F + H ++L L L +A+ L Q R AL +FK G+
Sbjct: 277 TRESGNHI---LVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVR 333
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ TDVA RGLDIP D+V+N+ +P DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 334 ILVCTDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLL 393
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
++EA G + EE+ + +V + + RV A + A +K M + +E ER+ ++L
Sbjct: 394 QKVEASTGVKCEEWPISDGDVAAVLQRVEDAEQEA-VKEMRESDQEAKFEREARQL 448
>gi|145515375|ref|XP_001443587.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410976|emb|CAK76190.1| unnamed protein product [Paramecium tetraurelia]
Length = 431
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 254/405 (62%), Gaps = 9/405 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL +W ++ C ++ + P P+Q IP +L+GK+VL +QTGSGKTAAF+ PIL
Sbjct: 9 FEELGLDQWLLKLCWKIDYKEPRPIQVLSIPPLLQGKNVLISSQTGSGKTAAFSFPILQT 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L++DPYG+ A+++T RELA Q+AEQ + G+ ++LR +++GG+ Q K L PH+
Sbjct: 69 LSQDPYGIFAIILTANRELAVQIAEQIQIFGASVNLRLALLIGGLSSSKQVKLLGQIPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF-QCLPKNRQTL 240
++ TPGR LL D + K+ +LDE DR+L+ ++++ V+ QC ++ Q
Sbjct: 129 IVGTPGRCAELLSIDVNFQKYIKNVKYFILDEVDRLLEPQIWDDIKKVYEQC--ESPQIA 186
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEG--FKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
L SAT+ + Q L E AN F E K ET+K +++ +P VKD Y +H++ K
Sbjct: 187 LVSATLNNVTQQLKEEFAN-INFVECINNPEQKVSETIKHKFVLMPDLVKDYYFIHLMKK 245
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+E S I+F TCR CH L+ LL + ++ LHS Q +R+S L ++S +A +L
Sbjct: 246 LEG---ASTIVFAPTCRKCHELNQLLNHFEIKSTCLHSMLPQHERISNLRAYRSQKAQVL 302
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP V V+N+++P+ DY+HRVGRT RAGR G A++ +TQ DV+ +
Sbjct: 303 VATDVASRGLDIPNVKFVINWNVPKVEADYIHRVGRTGRAGRRGTAITMMTQFDVERVLA 362
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEK 463
IE ++ ++EE + E++VL+++T V KA + + + DG EK
Sbjct: 363 IENLINLKMEEIKFNEEKVLANMTDVTKAIKTIKITMQQDGTTEK 407
>gi|118578051|sp|Q0U8V9.1|DBP8_PHANO RecName: Full=ATP-dependent RNA helicase DBP8
Length = 508
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 182/455 (40%), Positives = 262/455 (57%), Gaps = 19/455 (4%)
Query: 38 AKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG 97
A + K + P+ N V+FA + +A W V + + ++RPT +Q CIP+IL+G
Sbjct: 58 ASRVAVSKASVPEENG---KEKVSFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKG 114
Query: 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157
+D +G ++TG+GKT AF++PIL + AEDP G+ L+ITPTRELA Q+ EQ KA+ + +
Sbjct: 115 RDCIGGSRTGTGKTVAFSVPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSM 174
Query: 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADR 216
+ +V GG D QA +L +RPHVVIATPGR+ ++ D R +F+V DEADR
Sbjct: 175 KPILVTGGSDQREQAIALASRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADR 234
Query: 217 VLDVGFEEELRVVFQCL----PK-NRQTLLFSATMTSDLQTLLELSANKA----YFYEA- 266
+L G + + CL PK RQTLLF+AT+T ++ L + E
Sbjct: 235 LLAPGRGSMIPDIETCLSVLPPKEQRQTLLFTATVTPEVLALKSQPRAPGRLPIFVCEVD 294
Query: 267 YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326
E T +L Q Y+ P K+ YL HVL +S IIF + ++ LL +L
Sbjct: 295 TETLATPASLSQLYLQTPVTHKECYL-HVLLLTPLNLTKSVIIFCNRTKTATLLEYMLRM 353
Query: 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
LD ALHS Q R+S L RF++ A IL+ATDVA+RGLDIP V LV+N+D+PR P
Sbjct: 354 LDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPD 413
Query: 387 DYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE----CKEQEVLSDIT 442
DY+HRVGRTARAGR G +V+F+ Q DV+L+ IE VG ++ EFE E V+ D
Sbjct: 414 DYIHRVGRTARAGRPGNSVTFIGQRDVELVLAIEERVGGKMSEFEEEGVSVEGRVVRDAL 473
Query: 443 RVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
++ ++ + +++G + K K + + E
Sbjct: 474 KIVTEKKREALLNIEEGRDVKGNRMVGMKKRRVVE 508
>gi|171686908|ref|XP_001908395.1| hypothetical protein [Podospora anserina S mat+]
gi|170943415|emb|CAP69068.1| unnamed protein product [Podospora anserina S mat+]
Length = 576
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 179/413 (43%), Positives = 249/413 (60%), Gaps = 16/413 (3%)
Query: 34 ESKNAKTTQLEKFTNPDPNS---TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHC 90
+S+ K + K T P+P + +TDS TF LG+ W VQ+ + ++RPT +Q
Sbjct: 116 KSQADKKAEAVKATLPEPTTGVTVSTDSNTTFESLGVRPWLVQSLANMAIKRPTAIQRES 175
Query: 91 IPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150
IP +L+G+D +G ++TGSGKT AF++PIL + AE+P + +++TPTRELA Q+ EQ KA
Sbjct: 176 IPMLLKGRDCIGGSRTGSGKTVAFSVPILQQWAENPSAIFGVILTPTRELALQIFEQVKA 235
Query: 151 LGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDP-DIPPVFSRTKFL 209
+ S L+ +V GG D+ QA +L RPH+VIATPGR+ + D R +F+
Sbjct: 236 ISSPHSLKAILVTGGADMRAQAIALAQRPHIVIATPGRLADHIRTSGYDTVCGLGRVRFV 295
Query: 210 VLDEADRVL-DVGFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTLLEL----SAN 259
VLDEADR+L D G L V +CL + RQTLLF+AT+T ++ L +
Sbjct: 296 VLDEADRLLADNGPGSMLPDVEECLSALPPAEKRQTLLFTATITQEVMALKNMPRKPGRE 355
Query: 260 KAYFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
+ E E TLKQ ++ +P ++ YL H+ E +S IIF + +
Sbjct: 356 PVFVCEVDTEKLAIPPTLKQMHLQVPVTHREHYL-HMFLLTEQNVHKSIIIFCNRTSTAD 414
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
L LL LD +LHS Q QR+ L RF++ A IL+ATDVA+RGLDIP V +V+N
Sbjct: 415 FLHHLLRLLDHRITSLHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVKMVIN 474
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431
YDIPR P DY+HRVGRTARAGR G AV+FV Q DVDL+ IE VG+++E +E
Sbjct: 475 YDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDLVLAIEDRVGRKMEAWE 527
>gi|85084455|ref|XP_957309.1| hypothetical protein NCU06418 [Neurospora crassa OR74A]
gi|74654303|sp|Q7RYZ7.1|DBP8_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-8
gi|28918399|gb|EAA28073.1| hypothetical protein NCU06418 [Neurospora crassa OR74A]
Length = 626
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 192/488 (39%), Positives = 281/488 (57%), Gaps = 34/488 (6%)
Query: 12 PLFAKPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTN----PDPNSTTT---DSTVTFAG 64
P+F S+ + K +++ KT + E+ T P+P ST + D+ TF
Sbjct: 149 PVFNNVPSRIKKK---------QAEAPKTEKTEEATPALPVPEPASTVSVPIDANTTFDA 199
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
L + W VQ+ + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + A
Sbjct: 200 LNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAA 259
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
+P + +++TPTRELA Q+ EQ AL L+ ++ GG D+ QA L RPH+VIA
Sbjct: 260 NPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIA 319
Query: 185 TPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCL-----PKNR 237
TPGR+ + D R KF+VLDEADR+L + G L V +C P R
Sbjct: 320 TPGRLADHIRTSGEDTICGLRRVKFIVLDEADRLLANSGHGSMLPDVEECFSVLPPPSER 379
Query: 238 QTLLFSATMTSDLQTLLE---LSANKAYFYEAYEGFKTV--ETLKQQYIFIPKNVKDVYL 292
QTLLF+ATMT +++ L E + F + + TL+Q ++ +P ++ YL
Sbjct: 380 QTLLFTATMTPEVKALSERPPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPVTHREHYL 439
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
L +++ +S IIF + + L LL LD +LHS QSQR+ L RF++
Sbjct: 440 HMFLLTPQNVD-KSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRA 498
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVA+RGLDIP V +V+NYDIPR P DY+HRVGRTARAGR G AV+FV Q D
Sbjct: 499 SAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRD 558
Query: 413 VDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVY-KARRVATMKLMDDGFEEKAKER 467
VDL+ IE VG+Q+E + + E V+ D +V + +R A +++ + ++R
Sbjct: 559 VDLVLAIEQRVGRQMEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEEQKEVGGKRKR 618
Query: 468 KKQKLKML 475
K+KL+ +
Sbjct: 619 GKEKLRAM 626
>gi|449704799|gb|EMD44971.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba
histolytica KU27]
Length = 450
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 246/397 (61%), Gaps = 11/397 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF GLG+ ++ + T K+ G+ +PT +Q CIP +L +VLG A+TGSGKTAAFALPI+H
Sbjct: 31 TFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPIIH 90
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ DPY ALV+TPTRELA Q+A+QFKA G+ +++R VVGG+D++ L PH
Sbjct: 91 HLSTDPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDVIRILHHLSGSPH 150
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD--VGFEEELRVVFQCLPKNRQ 238
V+IATPG++ L++ +P F KFL+LDEADR+ D G ++++ + K
Sbjct: 151 VIIATPGKLVSLIDH---LPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKFSKTVT 207
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSAT S + L L E K + Q YIFIP VK YL ++
Sbjct: 208 TGLFSATTDSLIPQLPALGLTDTKILITGEKQKLSDNCDQTYIFIPNKVKHCYLTYLCIN 267
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ I+F + ++ + + ++ +A LHS Q R + L+ F+SG+A+IL
Sbjct: 268 ------KQCIVFCGSVLRTEVIFRMFKSMELKATVLHSALPQIARENNLNSFRSGEASIL 321
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATD+ASRGLDIP V LV+NYD+P DY+HRVGRTARA R GLA++ V + + D I
Sbjct: 322 VATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRIQS 381
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE+ +G QL+E++ E++VL+ +T+ A+ VA + L
Sbjct: 382 IESQLGIQLKEYKVDEEKVLNILTQTSNAKEVAFISL 418
>gi|407924387|gb|EKG17439.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 412
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 247/397 (62%), Gaps = 16/397 (4%)
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
+ +++PT +Q CIP+I++G+D +G ++TGSGKT AFA+PIL + +EDP + A+++TPT
Sbjct: 1 MAIKKPTGIQKGCIPEIIKGRDCIGGSRTGSGKTVAFAVPILQKWSEDPVAIFAVILTPT 60
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED- 196
RELA Q+ EQF A+G +L+ +V GG D+ +QA +L +RPHVVIATPGR+ +
Sbjct: 61 RELALQIYEQFNAIGGPQNLKTILVTGGTDMRSQAIALASRPHVVIATPGRLADHINSSG 120
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-----KNRQTLLFSATMTSDLQ 251
D R +F+VLDEADR+L G L V CL RQT LF+AT+T +++
Sbjct: 121 EDTICGLRRVRFVVLDEADRLLASGRGSMLPDVETCLSVLPPSSRRQTCLFTATVTPEVR 180
Query: 252 TLLELSAN----KAYFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRS 306
L ++ + + E E TL+Q+Y+ +P ++ +L H L +S
Sbjct: 181 ALKDMPRTPGKPEVFVCEVDTEDLAVPTTLQQKYLQVPVTHREAFL-HTLLLTPANASKS 239
Query: 307 AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366
IIFV+ + LL +L LD +LHS QSQR+S L RF++ A IL+ATDVA+R
Sbjct: 240 TIIFVNRTSTAQLLEQMLRLLDHRVSSLHSGLPQSQRISNLARFRAKAARILVATDVAAR 299
Query: 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ 426
GLDIP V++V+NYD+PR P DY+HRVGRTARAGR G +++ V Q DV+L+ IE VG +
Sbjct: 300 GLDIPAVEMVINYDVPRDPDDYIHRVGRTARAGRAGESITMVGQRDVELVLAIENRVGTK 359
Query: 427 LEEFECK----EQEVLSDITRVYKARRVATMKLMDDG 459
+ EFE + E V+ D ++ ++ M +++G
Sbjct: 360 MIEFEEEGVNIETRVIRDALKIVGEKKREAMLEIEEG 396
>gi|3775997|emb|CAA09201.1| RNA helicase [Arabidopsis thaliana]
Length = 376
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 234/365 (64%), Gaps = 9/365 (2%)
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
DP A V++PTRELA Q+AEQF+ALG+ + LRC V+VGG+D + Q +L RPHV++A
Sbjct: 7 DP-AFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVA 65
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGR+ + + K+LVLDEADR+L+ FE+ L + + +P R+T LFSA
Sbjct: 66 TPGRLWDHMSDTKGFS--LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSA 123
Query: 245 TMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI 304
TMT ++ L EA + TV+TLKQQY F+ KD YL+++LS+M +
Sbjct: 124 TMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPE--- 180
Query: 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364
+++IF TC L+L+L L A+ + +QS+RL AL++FK+G+ IL+ TDVA
Sbjct: 181 STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 240
Query: 365 SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424
SRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+ +S V Q +++ +IE ++G
Sbjct: 241 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIG 300
Query: 425 KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKR 484
K+L E+ +E EVLS + RV +A++++ M + + G ++ E ++ + L G K R
Sbjct: 301 KKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEESERFL---GGNKDR 357
Query: 485 SEKRK 489
K +
Sbjct: 358 GNKER 362
>gi|169617257|ref|XP_001802043.1| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
gi|160703370|gb|EAT80850.2| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
Length = 1091
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 178/433 (41%), Positives = 255/433 (58%), Gaps = 16/433 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V+FA + +A W V + + ++RPT +Q CIP+IL+G+D +G ++TG+GKT AF++PIL
Sbjct: 660 VSFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVPIL 719
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ AEDP G+ L+ITPTRELA Q+ EQ KA+ + ++ +V GG D QA +L +RP
Sbjct: 720 QKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALASRP 779
Query: 180 HVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL----P 234
HVVIATPGR+ ++ D R +F+V DEADR+L G + + CL P
Sbjct: 780 HVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIETCLSVLPP 839
Query: 235 K-NRQTLLFSATMTSDLQTLLELSANKA----YFYEA-YEGFKTVETLKQQYIFIPKNVK 288
K RQTLLF+AT+T ++ L + E E T +L Q Y+ P K
Sbjct: 840 KEQRQTLLFTATVTPEVLALKSQPRAPGRLPIFVCEVDTETLATPASLSQLYLQTPVTHK 899
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL HVL +S IIF + ++ LL +L LD ALHS Q R+S L
Sbjct: 900 ECYL-HVLLLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRISNLA 958
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++ A IL+ATDVA+RGLDIP V LV+N+D+PR P DY+HRVGRTARAGR G +V+F+
Sbjct: 959 RFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFI 1018
Query: 409 TQNDVDLIHEIEAVVGKQLEEFE----CKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
Q DV+L+ IE VG ++ EFE E V+ D ++ ++ + +++G + K
Sbjct: 1019 GQRDVELVLAIEERVGGKMSEFEEEGVSVEGRVVRDALKIVTEKKREALLNIEEGRDVKG 1078
Query: 465 KERKKQKLKMLAE 477
K + + E
Sbjct: 1079 NRMVGMKKRRVVE 1091
>gi|91206551|sp|Q2UKX3.1|DBP8_ASPOR RecName: Full=ATP-dependent RNA helicase dbp8
gi|83767653|dbj|BAE57792.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 443
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 254/424 (59%), Gaps = 16/424 (3%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
L ++ W V + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + A+
Sbjct: 18 LNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAQ 77
Query: 125 DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIA 184
DP+G+ A+V+TPTRELA Q+ EQ KA+ + ++ ++ GG D+ +QA +L RPHVVIA
Sbjct: 78 DPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALSQRPHVVIA 137
Query: 185 TPGRIKVLLE-EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-----KNRQ 238
TPGR+ + D R + +VLDEADR+L G L V CL RQ
Sbjct: 138 TPGRLADHINTSGEDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSSERQ 197
Query: 239 TLLFSATMTSDLQTLLEL--SANKAYFY----EAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++ L + + NK + TLKQ Y+ +P ++ +L
Sbjct: 198 TLLFTATLTPEVRALKSMPRAENKPPVFVTEISTENNGAIPPTLKQTYLKVPMTHREAFL 257
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
HVL E + AIIF + ++ LL +L L +LHS QS+R S L RF++
Sbjct: 258 -HVLLSTERNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNSNLARFRA 316
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIP+V LV+N+D+PR P DYVHRVGRTARAGR G AV+ V Q D
Sbjct: 317 SAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRHGEAVTLVGQRD 376
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE---RKK 469
V L+ IE V +++EE+ + + + R + V K G E+ ++ RK+
Sbjct: 377 VQLVLAIEERVERRMEEWSEEGVSIEGRVVRGGVLKEVGEAKREASGEIEEGRDVLGRKR 436
Query: 470 QKLK 473
KLK
Sbjct: 437 NKLK 440
>gi|426197762|gb|EKV47689.1| hypothetical protein AGABI2DRAFT_185614 [Agaricus bisporus var.
bisporus H97]
Length = 433
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 167/415 (40%), Positives = 250/415 (60%), Gaps = 14/415 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LGL ++ ++L PT +Q CIP L G+D++G+A TGSGKT AFALPILH
Sbjct: 5 SFSDLGLCAPLIKALEDLKYETPTQIQAECIPPALSGRDIIGIAPTGSGKTIAFALPILH 64
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM-DLLTQAKSLMNRP 179
RL ++P A L QF+ALG+ + +R V+VGG D + QA L +P
Sbjct: 65 RLWDNPQPNFAWYF-------LLLGTQFEALGATMGVRSVVIVGGEEDRVQQAVRLAKKP 117
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H+++ATPGR+ L + K LVLDEADR+LD+ F+ ++ + + +P+ R T
Sbjct: 118 HIIVATPGRLHDHLNSTKGFS--LRQLKHLVLDEADRLLDLEFQLQITEILRAIPRERST 175
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYE-GFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
LFSATMT+++ L S + +KTV TL Q Y+ P K+V L+++++
Sbjct: 176 YLFSATMTANVTKLQRASLTDPVRVDVSSFKYKTVSTLLQYYVLCPLVNKEVMLVYLINS 235
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
M I I+FV T LS++L L+ +AV LH SQSQRL A +RFKSG++ IL
Sbjct: 236 MAQNTI---IVFVRTVADAKRLSIVLRTLEFQAVPLHGELSQSQRLGAFNRFKSGKSNIL 292
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATD+ASRGLD+ VD+V+NYD P +DYVHRVGRTARAGR G ++ V+Q D +++
Sbjct: 293 VATDLASRGLDVANVDVVINYDTPTSSKDYVHRVGRTARAGRAGKSILMVSQYDAEVMLR 352
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
+E + ++LE + + +E+ RVY+ RVA ++ +D + + +++ K K
Sbjct: 353 LEMALERKLELYPTEAEEIALLKERVYEVGRVARNQIKEDDMSQNERRKRRHKPK 407
>gi|407043080|gb|EKE41729.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 450
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 169/397 (42%), Positives = 246/397 (61%), Gaps = 11/397 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF GLG+ ++ + T K+ G+ +PT +Q CIP +L +VLG A+TGSGKTAAFALPI+H
Sbjct: 31 TFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPIIH 90
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ DPY ALV+TPTRELA Q+A+QFKA G+ +++R VVGG+D++ L PH
Sbjct: 91 HLSTDPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDVIRILHHLSGSPH 150
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD--VGFEEELRVVFQCLPKNRQ 238
V+IATPG++ L++ +P F KFL+LDEADR+ D G ++++ + K
Sbjct: 151 VIIATPGKLVSLIDH---LPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKFSKTVT 207
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSAT S + L L E K + Q YIF+P VK YL ++
Sbjct: 208 TGLFSATTDSLIPQLPALGLTDTKILITGERQKLSDNCDQTYIFMPNKVKHCYLTYLCIN 267
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ I+F + ++ + + ++ +A LHS Q R + L+ F+SG+A+IL
Sbjct: 268 ------KQCIVFCGSVLRTEVIFRMFKSMEIKATVLHSALPQIARENNLNSFRSGEASIL 321
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATD+ASRGLDIP V LV+NYD+P DY+HRVGRTARA R GLA++ V + + D I
Sbjct: 322 VATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRIQS 381
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE+ +G QL+E++ E++VL+ +T+ A+ VA + L
Sbjct: 382 IESQLGIQLKEYKVDEEKVLNILTQTSNAKEVAFISL 418
>gi|327272752|ref|XP_003221148.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Anolis carolinensis]
Length = 399
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 161/412 (39%), Positives = 238/412 (57%), Gaps = 51/412 (12%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
++ +F LG+ E + C +LG + PT +Q IP L+G+D++GLA+TGSGKT AF
Sbjct: 11 NAEAAKSFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAF 70
Query: 115 ALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
ALPIL L E P ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D++ Q+ +
Sbjct: 71 ALPILQALLETPQRFFALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLA 130
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +PHV+IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P
Sbjct: 131 LAKKPHVIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIP 188
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
++R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL++
Sbjct: 189 RDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVY 248
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L+++ S +IF STC + +LLL L A+ LH +Q
Sbjct: 249 ILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQ-------------- 291
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
DY+HRVGRTARAGR G +++FVTQ DV+
Sbjct: 292 --------------------------------DYIHRVGRTARAGRSGKSITFVTQYDVE 319
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
L IE ++GK+L F +E EV+ RV +A+R A M+L G +++++E
Sbjct: 320 LFQRIEHLIGKKLPAFPTQEDEVMMLTERVAEAQRFARMELQQKGDKKRSRE 371
>gi|67484682|ref|XP_657561.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56474830|gb|EAL52186.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 450
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 169/397 (42%), Positives = 245/397 (61%), Gaps = 11/397 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF GLG+ ++ + T K+ G+ +PT +Q CIP +L +VLG A+TGSGKTAAFALPI+H
Sbjct: 31 TFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPIIH 90
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ DPY ALV+TPTRELA Q+A+QFKA G+ +++R VVGG+D++ L PH
Sbjct: 91 HLSTDPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDVIRILHHLSGSPH 150
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD--VGFEEELRVVFQCLPKNRQ 238
V+IATPG++ L++ +P F KFL+LDEADR+ D G ++++ + K
Sbjct: 151 VIIATPGKLVSLIDH---LPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKFSKTVT 207
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSAT S + L L E K + Q YIFIP VK YL ++
Sbjct: 208 TGLFSATTDSLIPQLPALGLTDTKILITGEKQKLSDNCDQTYIFIPNKVKHCYLTYLCIN 267
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ I+F + ++ + + ++ +A LHS Q R + L+ F+S +A+IL
Sbjct: 268 ------KQCIVFCGSVLRTEVIFRMFKSMELKATVLHSALPQIARENNLNSFRSDEASIL 321
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATD+ASRGLDIP V LV+NYD+P DY+HRVGRTARA R GLA++ V + + D I
Sbjct: 322 VATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRIQS 381
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE+ +G QL+E++ E++VL+ +T+ A+ VA + L
Sbjct: 382 IESQLGIQLKEYKVDEEKVLNILTQTSNAKEVAFISL 418
>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
Length = 479
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 271/481 (56%), Gaps = 28/481 (5%)
Query: 21 TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNS----TTTDSTV--TFAGLGLAEWAVQT 74
+++K +PE K K+ + E +P P++ T + S V TFA LGL +
Sbjct: 7 SKTKAAGLSDPETVVKKKKSRE-EDVKSPAPDASACPTISASAVSPTFASLGLCSELCAS 65
Query: 75 CKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134
LG + PT +Q+ +P L+G+D++ LA+TGSGKTAAF LPIL RL + AL++
Sbjct: 66 VSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRFYALIL 125
Query: 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE 194
PTREL Q+++Q A+G L + +VGG+D TQA +L +PHVV+ +PGR+ L+
Sbjct: 126 APTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPGRVVDHLQ 185
Query: 195 EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKNRQTLLFSATMTSDLQT 252
+ K LVLDEADR+L + F+ L+V+ + + P RQT+LFSATMT+ +
Sbjct: 186 QTKGFS--LKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMTTKVSK 243
Query: 253 LLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVS 312
L + S K E + L+Q ++ +P +K +L L + S I+F +
Sbjct: 244 LQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSP---SSVIVFTN 300
Query: 313 TCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372
TC + +L L L ++V LH +Q QR+ AL +F++ + + L+AT+V SRGLDIP
Sbjct: 301 TCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLDIPH 360
Query: 373 VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE- 431
V +V+N+D+P ++Y+HRVGRTARAGR G A++ VTQ DV+ IE +G++LEE
Sbjct: 361 VQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIEHALGQKLEELTE 420
Query: 432 -CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKK 490
++V+ +V +A R A + E ++ L +K + KKR K+
Sbjct: 421 LTATEKVMPLHEKVLEALRSAEL------------EAREADEAALVQKAAKKKRGAGNKR 468
Query: 491 S 491
S
Sbjct: 469 S 469
>gi|167381238|ref|XP_001735636.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
gi|165902329|gb|EDR28186.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
SAW760]
Length = 450
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 244/397 (61%), Gaps = 11/397 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF GLG+ ++ + T K+ G+ +PT +Q CIP +L +VLG A+TGSGKTAAFALPI+H
Sbjct: 31 TFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPIIH 90
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+ DPY ALV+TPTRELA Q+A+QFK GS +++R VVGG+D++ L PH
Sbjct: 91 HLSTDPYTGFALVLTPTRELASQIADQFKVFGSCINIRVVQVVGGVDVIRILHHLSGSPH 150
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD--VGFEEELRVVFQCLPKNRQ 238
VVIATPG++ L++ +P F KFL+LDEADR+ D G ++++ + K
Sbjct: 151 VVIATPGKLVSLIDH---LPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKFSKTVT 207
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSAT S + L L E K + Q YIF+P VK YL ++
Sbjct: 208 TGLFSATTDSLIPQLPALGLADTKILITGERQKLSDNCDQTYIFMPNKVKHCYLTYLCIN 267
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ I+F + ++ + + ++ +A LHS Q R + L+ F+SG+A IL
Sbjct: 268 ------KQCIVFCGSVLRTEVIFRMFKSMEIKATVLHSALPQIARENNLNSFRSGEALIL 321
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATD+ASRGLDIP V LV+NYD+P DY+HRVGRTARA R GLA++ V + + D I
Sbjct: 322 VATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRIQS 381
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE+ +G QL+E++ E++VL+ +T+ A+ VA + L
Sbjct: 382 IESQLGVQLKEYKVDEEKVLNILTQTSNAKEVAFISL 418
>gi|452846401|gb|EME48333.1| hypothetical protein DOTSEDRAFT_76016 [Dothistroma septosporum
NZE10]
Length = 493
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 181/454 (39%), Positives = 259/454 (57%), Gaps = 22/454 (4%)
Query: 31 PEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHC 90
P P++K+ LE + T+ TF LG +W V + ++ PT +Q
Sbjct: 28 PPPDTKD-----LESLPTSIQDVIDTNDNSTFPDLGTDKWLVSALSHMSIKWPTRIQKAT 82
Query: 91 IPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150
IP+IL G+D +G ++TGSGKT AF +PIL + A P G+ AL++TPTRELA Q+ EQF+A
Sbjct: 83 IPQILAGRDCIGGSRTGSGKTIAFGVPILQQWARQPSGIFALIMTPTRELALQIYEQFQA 142
Query: 151 LGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFL 209
+G ++C +V GG D+ QA SL RPHVVIATPGR+ +E D + K++
Sbjct: 143 IGGSQGVKCVLVTGGADMRQQAISLSQRPHVVIATPGRLADHIENSGEDTIQGLKKVKYV 202
Query: 210 VLDEADRVLDVGFE----EELRVVFQCLPKN--RQTLLFSATMTSDLQTLLELSANKA-- 261
VLDEADR+L G + ++ LP+ RQT LF+ATMT +++ L E+ K
Sbjct: 203 VLDEADRLLASGGKGSMLPDVETCLDYLPQGSQRQTCLFTATMTPEVRALKEMPRAKGQQ 262
Query: 262 --YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
Y E + +TL Q Y + K+ YL HVL ++ IIF + + +
Sbjct: 263 PVYVCEVDIDSLAIPDTLTQTYQLVNVLHKEKYL-HVLLSTPANVEKTTIIFCNRTETAN 321
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
L+ LL L+ ALHS + R++ L RF++ A IL+ATDVASRGLDIP V LV+N
Sbjct: 322 LVEYLLRLLEHRVTALHSGLQHTDRVNNLARFRARAARILVATDVASRGLDIPDVGLVIN 381
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQL----EEFECKE 434
YD+PR P DY+HRVGRTARAGR G ++S V Q DV+L+ IE VG+++ EE E
Sbjct: 382 YDLPRNPDDYIHRVGRTARAGRKGTSISLVGQRDVELVKAIEERVGREMVAYAEEKINVE 441
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
V+ + V ++ M +++G + K R+
Sbjct: 442 SRVIKEALNVVGDKKREAMLAIEEGRDVKGNRRR 475
>gi|440478274|gb|ELQ59116.1| ATP-dependent RNA helicase DBP8 [Magnaporthe oryzae P131]
Length = 596
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 189/456 (41%), Positives = 268/456 (58%), Gaps = 37/456 (8%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TF LG+ W VQ+ L ++RPT +Q CI +IL+G+D +G ++TGSGKT AFA
Sbjct: 144 TDQNTTFESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFA 203
Query: 116 LPILHRLAEDPYGVLALVITPTR-----------------ELAYQLAEQFKALGSGLHLR 158
+PIL + A+DP + A+V+T TR ELA Q+ EQFKA+ S L+
Sbjct: 204 VPILQKYAQDPSAIFAVVLTATRQVSYPLLLCTPLDIYRPELALQIYEQFKAVSSPHVLK 263
Query: 159 CEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRV 217
+++GG D+ +QA +L RP +VIATPGR+ + D R KFLVLDEADR+
Sbjct: 264 AALIIGGSDMRSQAIALAQRPSIVIATPGRLADHIRSSGEDTICGLRRVKFLVLDEADRL 323
Query: 218 LDV-GFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA- 266
L G L + +C+ P++RQTLLF+AT+T +++ L E+ + E
Sbjct: 324 LSSKGPGSMLPHIDECMAVLPPPEDRQTLLFTATVTPEVRALKEMPTRPGKEPVHVCEVD 383
Query: 267 YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326
+ ++LKQ YI + ++ +L L + RS IIFV+ + L LL
Sbjct: 384 TQVLAIPDSLKQSYIQLTVTHREHFLHEFLLTAANTE-RSIIIFVNRTSTAQFLHHLLRL 442
Query: 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
LD +LHS Q QR+ L RF++ A IL+ATDVASRGLDIP V +V+NYD+PR P
Sbjct: 443 LDHRVTSLHSKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPD 502
Query: 387 DYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDIT 442
DY+HRVGRTARAGR G AV+FV Q DV+L+ IE VG+ +E++E + E V+ D
Sbjct: 503 DYIHRVGRTARAGRKGEAVNFVGQRDVELVLAIEKRVGRPMEKWEEEGVNLETRVIRDSL 562
Query: 443 R-VYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
+ V + +R A + + ++ E RK+QKLK+ AE
Sbjct: 563 KLVSEKKREALLNIEEN--REVGGRRKRQKLKLGAE 596
>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 479
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 270/481 (56%), Gaps = 28/481 (5%)
Query: 21 TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNS----TTTDSTV--TFAGLGLAEWAVQT 74
+++K +PE K K + E +P P++ T + S V TFA LGL +
Sbjct: 7 SKTKAAGLSDPETVVKKKKRRE-EDVKSPAPDASACPTISASAVSPTFASLGLCSELCAS 65
Query: 75 CKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134
LG + PT +Q+ +P L+G+D++ LA+TGSGKTAAF LPIL RL + AL++
Sbjct: 66 VSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRFYALIL 125
Query: 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE 194
PTREL Q+++Q A+G L + +VGG+D TQA +L +PHVV+ +PGR+ L+
Sbjct: 126 APTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPGRVVDHLQ 185
Query: 195 EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKNRQTLLFSATMTSDLQT 252
+ K LVLDEADR+L + F+ L+V+ + + P RQT+LFSATMT+ +
Sbjct: 186 QTKGFS--LKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMTTKVSK 243
Query: 253 LLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVS 312
L + S K E + L+Q ++ +P +K +L L + S I+F +
Sbjct: 244 LQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSP---SSVIVFTN 300
Query: 313 TCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372
TC + +L L L ++V LH +Q QR+ AL +F++ + + L+AT+V SRGLDIP
Sbjct: 301 TCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLDIPH 360
Query: 373 VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE- 431
V +V+N+D+P ++Y+HRVGRTARAGR G A++ VTQ DV+ IE +G++LEE
Sbjct: 361 VQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIEHALGQKLEELTE 420
Query: 432 -CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKK 490
++V+ +V +A R A + E ++ L +K + KKR K+
Sbjct: 421 LTATEKVMPLHEKVLEALRSAEL------------EAREADEAALVQKAAKKKRGAGNKR 468
Query: 491 S 491
S
Sbjct: 469 S 469
>gi|440473101|gb|ELQ41923.1| ATP-dependent RNA helicase DBP8 [Magnaporthe oryzae Y34]
Length = 682
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 189/456 (41%), Positives = 268/456 (58%), Gaps = 37/456 (8%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD TF LG+ W VQ+ L ++RPT +Q CI +IL+G+D +G ++TGSGKT AFA
Sbjct: 230 TDQNTTFESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFA 289
Query: 116 LPILHRLAEDPYGVLALVITPTR-----------------ELAYQLAEQFKALGSGLHLR 158
+PIL + A+DP + A+V+T TR ELA Q+ EQFKA+ S L+
Sbjct: 290 VPILQKYAQDPSAIFAVVLTATRQVSYPLLLCTPLDIYRPELALQIYEQFKAVSSPHVLK 349
Query: 159 CEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEEDPDIPPVFSRTKFLVLDEADRV 217
+++GG D+ +QA +L RP +VIATPGR+ + D R KFLVLDEADR+
Sbjct: 350 AALIIGGSDMRSQAIALAQRPSIVIATPGRLADHIRSSGEDTICGLRRVKFLVLDEADRL 409
Query: 218 LDV-GFEEELRVVFQCL-----PKNRQTLLFSATMTSDLQTLLELSANKA----YFYEA- 266
L G L + +C+ P++RQTLLF+AT+T +++ L E+ + E
Sbjct: 410 LSSKGPGSMLPHIDECMAVLPPPEDRQTLLFTATVTPEVRALKEMPTRPGKEPVHVCEVD 469
Query: 267 YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326
+ ++LKQ YI + ++ +L L + RS IIFV+ + L LL
Sbjct: 470 TQVLAIPDSLKQSYIQLTVTHREHFLHEFLLTAANTE-RSIIIFVNRTSTAQFLHHLLRL 528
Query: 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
LD +LHS Q QR+ L RF++ A IL+ATDVASRGLDIP V +V+NYD+PR P
Sbjct: 529 LDHRVTSLHSKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPD 588
Query: 387 DYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDIT 442
DY+HRVGRTARAGR G AV+FV Q DV+L+ IE VG+ +E++E + E V+ D
Sbjct: 589 DYIHRVGRTARAGRKGEAVNFVGQRDVELVLAIEKRVGRPMEKWEEEGVNLETRVIRDSL 648
Query: 443 R-VYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
+ V + +R A + + ++ E RK+QKLK+ AE
Sbjct: 649 KLVSEKKREALLNIEEN--REVGGRRKRQKLKLGAE 682
>gi|391867361|gb|EIT76607.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 413
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 175/411 (42%), Positives = 248/411 (60%), Gaps = 16/411 (3%)
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137
+ +R+PT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + A+DP+G+ A+V+TPT
Sbjct: 1 MAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAQDPFGIFAVVLTPT 60
Query: 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-ED 196
RELA Q+ EQ KA+ + ++ ++ GG D+ +QA +L RPHVVIATPGR+ +
Sbjct: 61 RELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALSQRPHVVIATPGRLADHINTSG 120
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-----KNRQTLLFSATMTSDLQ 251
D R + +VLDEADR+L G L V CL RQTLLF+AT+T +++
Sbjct: 121 EDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSSERQTLLFTATLTPEVR 180
Query: 252 TLLEL--SANKAYFY----EAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIR 305
L + + NK + TLKQ Y+ +P ++ +L HVL E +
Sbjct: 181 ALKSMPRAENKPPVFVTEISTENNGAIPPTLKQTYLKVPMTHREAFL-HVLLSTEGNSTK 239
Query: 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365
AIIF + ++ LL +L L +LHS QS+R S L RF++ A IL+ATDVAS
Sbjct: 240 PAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNSNLARFRASAARILVATDVAS 299
Query: 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425
RGLDIP+V LV+N+D+PR P DYVHRVGRTARAGR G AV+ V Q DV L+ IE V +
Sbjct: 300 RGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRHGEAVTLVGQRDVQLVLAIEERVER 359
Query: 426 QLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE---RKKQKLK 473
++EE+ + + + R + V K G E+ ++ RK+ KLK
Sbjct: 360 RMEEWSEEGVSIEGRVVRGGVLKEVGEAKREASGEIEEGRDVLGRKRNKLK 410
>gi|402467624|gb|EJW02900.1| hypothetical protein EDEG_02724 [Edhazardia aedis USNM 41457]
Length = 403
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/393 (39%), Positives = 236/393 (60%), Gaps = 8/393 (2%)
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
E G PT VQ IP +L+ K V+ LA TGSGKT AFA+PIL+ + + L+ITP
Sbjct: 19 EKGFSTPTNVQKEVIPHVLQKKSVITLANTGSGKTLAFAVPILNDIIKYNTYYHTLIITP 78
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA Q+A F+ LG LR ++GG+D Q + + PH++I TPGR+ +++++
Sbjct: 79 TRELAMQIANVFENLGQNHGLRVVTLIGGVDEKEQKRKIFESPHIIIGTPGRLSLIMQK- 137
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
+F R ++ VLDE D++L+ + +++R + + +N+ L+FSATMT LQ+L++L
Sbjct: 138 ---VKLFDRLQYFVLDEGDKLLETTYADDIRKISNEVNENKSMLIFSATMTDSLQSLIDL 194
Query: 257 SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
+ + F TV L Q+Y+F+P+ K+ YL + + I+FVS+C
Sbjct: 195 NLIDPVKVVINKTFDTVSKLIQKYVFLPQKYKETYLYLICQD----NLSKKIVFVSSCLG 250
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
L + L+ ++ + VALH Q +R L+ F A +LLATDVA+RGLDIP V++V
Sbjct: 251 AQTLKIFLQNMNIDCVALHGKLKQDERCEVLNIFSGKDACVLLATDVAARGLDIPEVEMV 310
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
+NYD+PR ++YVHRVGRTAR + GLAV+FVTQ DV L +IEA + + +EC E++
Sbjct: 311 INYDLPRTSKEYVHRVGRTARLDKEGLAVNFVTQYDVALFQKIEADIKTSMVLYECDEEK 370
Query: 437 VLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+ +V A + A ++ + K K R+K
Sbjct: 371 AKALFHKVSVAYKTAYDEVKESDMNAKKKHRRK 403
>gi|71665094|ref|XP_819521.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70884825|gb|EAN97670.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 511
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 255/429 (59%), Gaps = 12/429 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL E + C E G + PT +Q IP + EG+D++G+AQTGSGKT A+ LP+++
Sbjct: 38 SFKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVN 97
Query: 121 RL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L ++ PY + LV+ PTRELA Q+ QF LG + LR +VGG D++ QA L
Sbjct: 98 WLLTQSKVPY-LSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSK 156
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPHVV+ TPGRIK L+ V + LVLDEAD++LD+ +E+E+ + + LP +R
Sbjct: 157 RPHVVVGTPGRIKDHLQNTKGFQLV--KLHALVLDEADKMLDMDYEKEIDAILEHLPHSR 214
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QT+LFSAT+ + + L + S N E + TV+TLKQ Y+F P YL L+
Sbjct: 215 QTMLFSATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLPYLHLYLT 274
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ I ++F + H ++L L L +A+ L Q+ R AL +FK G+ I
Sbjct: 275 RETGNHI---LVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKVRI 331
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVA RGLDI D+V+NY +P DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 332 LVCTDVAQRGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQ 391
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IEA G + EE+ +E +V + + RV A + ++ ++ E+++K K+ + + A+
Sbjct: 392 RIEATTGVKCEEWPVQEGDVAAVLQRVEDAEQETIKEIREN--EQESKFEKEVRQLVTAK 449
Query: 478 KGSLKKRSE 486
KG ++R E
Sbjct: 450 KGK-RERGE 457
>gi|242084812|ref|XP_002442831.1| hypothetical protein SORBIDRAFT_08g003560 [Sorghum bicolor]
gi|241943524|gb|EES16669.1| hypothetical protein SORBIDRAFT_08g003560 [Sorghum bicolor]
Length = 531
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 232/365 (63%), Gaps = 23/365 (6%)
Query: 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL 155
EG D++ LAQTGSGKTAAFALPIL L E A V++PTRELA Q+AEQF+ALGS +
Sbjct: 153 EGMDLIALAQTGSGKTAAFALPILQALLEHRRPFFACVLSPTRELAIQIAEQFEALGSAI 212
Query: 156 HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEA 214
L C V+VGG+D + Q SL PH+++ATPGR LL+ D ++ K+LVLDEA
Sbjct: 213 GLVCSVLVGGVDRMQQVISLARHPHIIVATPGR---LLDHLTDTKGFSLNKIKYLVLDEA 269
Query: 215 DRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE 274
D +LD+ FE+ L + + +PK R+T LFSATMT L+ + + TV+
Sbjct: 270 DVLLDMEFEKSLNDILKVIPKERRTFLFSATMTDKLKVSCK--------------YSTVD 315
Query: 275 TLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVAL 334
TL++++ +P N KD L++VL+K+ I +IF TC S LL+L+L L EA+ +
Sbjct: 316 TLREEFYLVPANDKDCCLVYVLNKIPGSMI---MIFTETCYSSRLLALMLRNLGFEAIFI 372
Query: 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGR 394
+ SQ +RL AL+RFKS I+ TDVASRGLDI VD+V+NYDIP + YVHRVGR
Sbjct: 373 NGKMSQDKRLGALNRFKSKGCNIITCTDVASRGLDIQGVDVVINYDIPSL-KSYVHRVGR 431
Query: 395 TARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMK 454
TARAG+ G A+S V Q +V IE ++GK++ + E E E+ V ++R+A +K
Sbjct: 432 TARAGQSGYALSLVNQYEVLRFKYIEKLLGKEISKSEVDECELKILKECVCDSKRIA-LK 490
Query: 455 LMDDG 459
+ DG
Sbjct: 491 VKGDG 495
>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
Length = 398
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 233/378 (61%), Gaps = 5/378 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+++ + CK PT +Q IP L G+D++G AQTGSGKT A+ LPI+
Sbjct: 3 SFDKLGISKELCRICKANNFFIPTKIQAKVIPHALNGRDIIGYAQTGSGKTIAYLLPIIQ 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + ++++ P+RELA+Q+A F+A G+ ++ V+VGG++ +Q L PH
Sbjct: 63 NLVKKKTAFFSIILVPSRELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALLSLNPH 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
++I TPGR+ LE+ + + + LV+DEADR+ + F++E ++F LPKN+Q+L
Sbjct: 123 ILICTPGRLIEHLEKF--LKNKIKKLEILVIDEADRLFQLDFKKEFSIIFSELPKNKQSL 180
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
FSATM+ +L+ L + + + +K V+TL+Q YIFIP+ +KD Y +++ ++
Sbjct: 181 FFSATMSLNLENLQKNNMKNPVKIQINRKYKVVKTLQQNYIFIPQKLKDCYFIYLCNEFN 240
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S ++FV T + +LL + L A LH +Q++RL L +F+ G+ IL+A
Sbjct: 241 G---SSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKILIA 297
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TD+ASRGLDIP VDLVLNYD+P ++Y+HRVGRTARAG+ G ++ VTQ D+ L +IE
Sbjct: 298 TDLASRGLDIPNVDLVLNYDLPHLAKEYLHRVGRTARAGKSGRTINIVTQYDIHLCQKIE 357
Query: 421 AVVGKQLEEFECKEQEVL 438
+V ++ K VL
Sbjct: 358 TLVQQKFILLNFKLAHVL 375
>gi|407409724|gb|EKF32444.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 512
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 255/429 (59%), Gaps = 12/429 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL E + C E G + PT +Q IP + EG+D++G+AQTGSGKT A+ LP+++
Sbjct: 38 SFKALGLCEELISVCAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVN 97
Query: 121 RL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L ++ PY + LV+ PTRELA Q+ QF LG + LR +VGG D++ QA L
Sbjct: 98 WLLTQSKVPY-LSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSK 156
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPHVV+ TPGRIK L+ V + LVLDEAD++LD+ +E+E+ + + LP +R
Sbjct: 157 RPHVVVGTPGRIKDHLQNTKGFQLV--KLHALVLDEADKMLDMDYEKEIDAILEHLPHSR 214
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QT+LFSAT+ + + L + S N E + TV+TLKQ Y+F P YL L+
Sbjct: 215 QTMLFSATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLPYLHLYLT 274
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ I ++F + H ++L L L +A+ L Q+ R AL +FK G+ I
Sbjct: 275 RETGNHI---LVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKVRI 331
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVA RGLDI D+V+NY +P DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 332 LVCTDVAQRGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQ 391
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IEA G + EE+ +E +V + + RV A + ++ ++ E+++K K+ + + A+
Sbjct: 392 RIEATTGVKCEEWPLQEGDVAAVLQRVEDAEQETIKEIREN--EQESKFEKEVRQLVTAK 449
Query: 478 KGSLKKRSE 486
KG ++R E
Sbjct: 450 KGK-RERGE 457
>gi|407849139|gb|EKG03976.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 511
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 168/422 (39%), Positives = 251/422 (59%), Gaps = 11/422 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL E + C E G + PT +Q IP + EG+D++G+AQTGSGKT A+ LP+++
Sbjct: 38 SFKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVN 97
Query: 121 RL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L ++ PY + LV+ PTRELA Q+ QF LG + LR +VGG D++ QA L
Sbjct: 98 WLLTQSKVPY-LSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSK 156
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPHVV+ TPGRIK L+ V + LVLDEAD++LD+ +E+E+ + + LP +R
Sbjct: 157 RPHVVVGTPGRIKDHLQNTKGFKLV--KLHALVLDEADKMLDMDYEKEIDAILEHLPHSR 214
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QT+LFSAT+ + + L + S N E + TV+TLKQ Y+F P YL L+
Sbjct: 215 QTMLFSATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLSYLHLYLT 274
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ I ++F + H ++L L L +A+ L Q+ R AL +FK G+ I
Sbjct: 275 RETGNHI---LVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKIRI 331
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVA RGLDI D+V+NY +P DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 332 LVCTDVAQRGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQ 391
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IEA G + EE+ +E +V + + RV A + ++ ++ E+++K K+ + + A+
Sbjct: 392 RIEATTGVKCEEWPVQEGDVAAVLQRVEDAEQETIKEIREN--EQESKFEKEVRQLVTAK 449
Query: 478 KG 479
+G
Sbjct: 450 RG 451
>gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 481
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 172/414 (41%), Positives = 253/414 (61%), Gaps = 28/414 (6%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL + + C+ LG PTP+Q IP L+ +D++G A+TGSGKT AFALP+L
Sbjct: 71 TFKELGLVDALCEVCEMLGYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPMLQ 130
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + LV++PTRELA Q+ + F++ + + LRC VVVGGMD+++Q+ +L +PH
Sbjct: 131 ALLDRPRPLFGLVLSPTRELAVQIGQTFESFAA-ISLRCAVVVGGMDMVSQSIALAKKPH 189
Query: 181 VVIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
VV T G FS ++LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 190 VV--TKG---------------FSLKHLQYLVIDEADRLLDMDFGPILEKILRHLPRERR 232
Query: 239 TLLFSATMTSDLQTLLELSA-NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T+LFSATM+S +++L S + A +TV TLKQ I P KDV L+++++
Sbjct: 233 TMLFSATMSSQVESLQRASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTRKDVCLVYLVN 292
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ I ++F T L++LL L AV LH+ SQSQRLSAL++ KSG +
Sbjct: 293 EFYGQSI---MVFTRTIYETQRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREM 349
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP + +V+NYD+P+ + YVHRVGRTARAG+ G AV+ VTQ D
Sbjct: 350 LIATDVAARGLDIPHIGIVINYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQYDHTHFL 409
Query: 418 EIEAVVG--KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+E +G +++ F +E++ RV +A+R A +++ F E+ +RKK
Sbjct: 410 AVEKAIGMERKILPFPIDREELMMFNPRVEEAQRHAHVEMRT--FIEQNGKRKK 461
>gi|401400548|ref|XP_003880804.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
Length = 462
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/416 (38%), Positives = 247/416 (59%), Gaps = 12/416 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF+ LGL + LG R PT +Q+ +P L+G+D++ LA+TGSGKTAAF LPIL
Sbjct: 34 TFSSLGLCAELCASVSTLGWRAPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 93
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L + AL++ PTREL Q+++Q A+G L + +VGG+D TQA +L +PH
Sbjct: 94 QLLQRTQRFYALILAPTRELCLQISQQMLAMGGSLGVTVVTLVGGLDHNTQAIALAKKPH 153
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKNRQ 238
VV+ +PGR+ L++ K LVLDEADR+L + F+ L+V+ + + P RQ
Sbjct: 154 VVVGSPGRVVDHLQQTKGFS--LKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQ 211
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T+LFSATMT+ + L + S K E + L+Q ++ +P +K +L L
Sbjct: 212 TMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASLLQQHFLLVPFKLKHTHLAAALLH 271
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ S I+F +TC + ++L L L ++V LH +Q QR+ AL +F++ + + L
Sbjct: 272 LSP---SSVIVFTNTCANARTIALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCL 328
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+AT+V SRGLDIP V +V+N+D+P ++Y+HRVGRTARAGR G A++ VTQ DV+
Sbjct: 329 VATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQR 388
Query: 419 IEAVVGKQLEEFE--CKEQEVLSDITRVYKARRVATMKLM---DDGFEEKAKERKK 469
IE +G++L+E ++V+ +V +A R A ++ D +KA ++K+
Sbjct: 389 IEHALGQKLDELTELTATEKVMPLHEKVLEALRSAELEAREADDAALVQKAAKKKR 444
>gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium]
gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium]
Length = 396
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 241/397 (60%), Gaps = 13/397 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+ F LG+ E V+ C +G + T +Q IP L+ +D+LG AQTGSGKT AF +PIL
Sbjct: 2 IRFKHLGVCEQIVRICDSVGFKYATKIQAKTIPYALKNRDILGYAQTGSGKTLAFVIPIL 61
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L + + VI P+RELA+Q+A + +G ++ ++ G++ TQ + P
Sbjct: 62 QSLLKFQITFYSFVIVPSRELAFQVASYIETIGYLFGIKIGLLTSGIEYATQISIIKRSP 121
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
H++I TPGR L+E +F + K +V DEADR+ F+++ V + LPK +Q
Sbjct: 122 HMMICTPGR---LIEYTEKTDNLFLKNIKKIVFDEADRLFQNDFDKKFLSVVENLPKFKQ 178
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
+ LFSATMT +++ L ++S + + + +KTV TL Q YIF+P K+ YL ++ ++
Sbjct: 179 SFLFSATMTINIEKLKKISMSNPVKIKINKKYKTVSTLVQNYIFMPFKSKNCYLSYICNE 238
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
D AIIFV T +++LL+ L+ + H SQ +R LH FK + IL
Sbjct: 239 FSDC---LAIIFVDTQICAEKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIKIL 295
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
++TD+ASRG+DIP ++L++NYDIP Y RDY+HR+GRTARAG+ G ++ VTQ D+ +
Sbjct: 296 VSTDLASRGIDIPDIELIINYDIPLYTRDYIHRIGRTARAGKTGRVINLVTQYDISSYQK 355
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
IE ++ ++LEEF+C +++L + ++RV+++KL
Sbjct: 356 IEILLQRKLEEFKCNLKDIL------FISKRVSSVKL 386
>gi|449304690|gb|EMD00697.1| hypothetical protein BAUCODRAFT_29056 [Baudoinia compniacensis UAMH
10762]
Length = 517
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 185/451 (41%), Positives = 265/451 (58%), Gaps = 21/451 (4%)
Query: 38 AKTTQLEKFTNPDPNSTTTD---STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKI 94
A T Q K PNS T TFA LGL W + + + ++ PT +Q+ IP+I
Sbjct: 61 AATDQSSKPEEVLPNSITASMDPEHTTFARLGLDPWLIASLSHMAIKHPTRIQSASIPQI 120
Query: 95 LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG 154
L G+D +G ++TGSGKT AFA+PIL + A DP G+ A+V+TPTRELA Q+ EQ A+G+
Sbjct: 121 LAGRDCIGGSRTGSGKTVAFAIPILQQWARDPSGIYAVVLTPTRELALQIYEQIAAVGAR 180
Query: 155 LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDIPPVFSRTKFLVLDE 213
++ +V GG D+ QA L RPH+V+ATPGR+ +E D +T+++VLDE
Sbjct: 181 QGVKVCLVTGGADMRAQALELEKRPHIVVATPGRLAHHVETSGDDTVRGLRKTRYVVLDE 240
Query: 214 ADRVLDVG---FEEELRVVFQCLPKN--RQTLLFSATMTSDLQTLLELS--ANKAYFYEA 266
ADR+L G ++ + LP + RQT LF+AT+T +++ L ++ +K +
Sbjct: 241 ADRLLATGKGSMLPDVEICLSALPPSSRRQTCLFTATVTPEVRALKQMPRPPDKPPLFIC 300
Query: 267 ---YEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSL 322
E TL+Q Y + K+ YL HVL + + I +S IIF + + +LL
Sbjct: 301 EVDTEDLAIPPTLRQTYQLVNVVHKEKYL-HVL-LLTPLNIDKSIIIFCNRTSTANLLEY 358
Query: 323 LLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIP 382
LL LD +LHS QR S L RF++ A IL+ATDVA+RGLDIP V LV+NYD+P
Sbjct: 359 LLRLLDHRVTSLHSGLHHEQRTSNLARFRARAARILVATDVAARGLDIPDVGLVINYDLP 418
Query: 383 RYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE----CKEQEVL 438
R P DY+HRVGRTARAGR G ++S V Q DVDL+H IEA VG+++EE++ E V+
Sbjct: 419 RNPDDYIHRVGRTARAGREGTSISMVGQRDVDLVHAIEARVGREMEEYQEERVSVEGRVI 478
Query: 439 SDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+ V ++ M +++G + K +K
Sbjct: 479 REALNVVGDKKREAMLAIEEGRDVTGKRVRK 509
>gi|390371036|dbj|GAB64917.1| DEAD/DEAH box helicase [Plasmodium cynomolgi strain B]
Length = 525
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/479 (34%), Positives = 262/479 (54%), Gaps = 39/479 (8%)
Query: 16 KPKSKTRSKPEPQPEPEPESKNAK------------------TTQLEKFTNPD--PNSTT 55
+P+ T + EPQ + + E K + +++ ++ D +
Sbjct: 61 RPRDGTSGEDEPQEQAQSEEKPNRRDDASEADDVDEVDHVNDADEVDHVSDADEVDHVND 120
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
D TF L + E +Q+ ELG ++PT +Q +P + +D++GL++TGSGKTA F
Sbjct: 121 ADERATFRDLNICEEILQSIDELGWKKPTAIQRKMLPYAFQKRDIIGLSETGSGKTACFI 180
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+PIL L E ALVI+PTREL Q+A+ F+ALGS L + + GG+D++TQ+ +L
Sbjct: 181 IPILQELREKRQSFFALVISPTRELCIQIAQHFQALGSNLLVNICTIFGGVDIVTQSLNL 240
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RP+++++TPGRI L K+LV DEAD++L + FE + + LP+
Sbjct: 241 AKRPNIIVSTPGRILDHLNNTKGFN--LKNLKYLVFDEADKLLSLDFEASINKLLLILPE 298
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R T LFSATMT + L + S E + T TL + Y+FIP K YL +
Sbjct: 299 KRITFLFSATMTKSVAKLKKASLKNPIKVEVSNKYSTASTLIENYLFIPLKYKYTYLCSL 358
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
S IIF +TC + ++ L +++ LH +Q+QRLS+L+ FKS +
Sbjct: 359 ----------SIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSNRY 408
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL++T V +RGLD+ + +V+N+D+ ++Y+HRVGRTARAGR G +++FVTQ DV+
Sbjct: 409 NILISTQVGARGLDLKDIKIVINFDLCS-CKEYIHRVGRTARAGRTGKSITFVTQYDVEN 467
Query: 416 IHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
IE ++ K++++F E E +VL +Y + V ++L D +E ++ K K
Sbjct: 468 FLSIEKMLNKKIDKFSEFDENDVL-----LYHEQTVEALRLADTEMKENQDLYRRGKFK 521
>gi|74224046|dbj|BAE23880.1| unnamed protein product [Mus musculus]
Length = 309
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/283 (49%), Positives = 196/283 (69%), Gaps = 6/283 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA +GL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFN--MKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
+D + S IIF +TC++C +L ++L + + VALHS Q
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQ 284
>gi|409039684|gb|EKM49202.1| hypothetical protein PHACADRAFT_214474 [Phanerochaete carnosa
HHB-10118-sp]
Length = 555
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/436 (37%), Positives = 247/436 (56%), Gaps = 39/436 (8%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
+ +FA + ++ + ++ +R PT +Q CIP + + +D +G A+ GSGKT AF LPI
Sbjct: 134 SASFAAMSISSPLLAVLNKMSIRAPTEIQAACIPPLFQAEDCIGNAKPGSGKTIAFVLPI 193
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
+HRL+ D +G+ ALV+T TRELA+Q++EQF LG+ ++R VVVGGMD+++QA L NR
Sbjct: 194 IHRLSTDSHGIFALVLTSTRELAFQISEQFAILGAAFNIRTAVVVGGMDIMSQAIELSNR 253
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ TPGRI LL DR+L F EL +FQ + K RQ
Sbjct: 254 PHIVVTTPGRIVDLL-------------------RTDRLLTSTFALELSYLFQAISKERQ 294
Query: 239 TLLFSATMTSDLQTLLEL----SANKAYFYEAYEGFKTVETLKQQYIFIPKNV--KDVYL 292
T LF+AT ++T+ + K + E +TV TLKQ YI +P +V K
Sbjct: 295 TCLFTATWMPSIETVADAPPKPGKQKPSVHRMTETVETVATLKQFYILVPSHVRKKAANA 354
Query: 293 MHVLSKMEDMGIRSA------------IIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
+ + ++ SA +IF + R+ L LL+ + + ALHS Q
Sbjct: 355 VKTVKPTKETKKASAGDEEEVAQPPPPVIFCARPRTAAYLMHLLQHMRIRSTALHSRLMQ 414
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
+RL++L F + +L+ TDV +RGLDI V LV+N+D+P P +Y +RVGRTARAGR
Sbjct: 415 RERLASLGLFHASIVPVLVCTDVGARGLDIANVALVVNWDLPGAPEEYTYRVGRTARAGR 474
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGF 460
GG+ VSFVT+ D + + +IE + +L E + +E++VL + A+R+A ++ + F
Sbjct: 475 GGVTVSFVTERDEEKVLKIEDRIKTKLREMQMREEKVLEHLNAFSTAKRLANVEFHESDF 534
Query: 461 --EEKAKERKKQKLKM 474
E+ + K K KM
Sbjct: 535 GKREEIHKIKSAKRKM 550
>gi|342184289|emb|CCC93770.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 515
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 178/456 (39%), Positives = 255/456 (55%), Gaps = 16/456 (3%)
Query: 19 SKTRSKPEPQPEPEPESK-NAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKE 77
S R K E + EP + K+ E N + TT F LGL E ++ C E
Sbjct: 7 SGVRRKKERRECDEPSHLLSKKSIGSELLDNEESKDTT------FKSLGLCEELIKACDE 60
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL---AEDPYGVLALVI 134
G R PT +Q IP + EG+DV+G+AQTGSGKT A+ LP+++ L ++ PY + LV+
Sbjct: 61 AGWRMPTRIQVATIPVVAEGRDVIGVAQTGSGKTGAYVLPLVNWLLTQSKVPY-LSVLVM 119
Query: 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE 194
PTRELA Q+ QF LG+ + LR +VGG D++ QA L RPHV++ TPGR+K L
Sbjct: 120 VPTRELAQQVTAQFIMLGNSVGLRVATLVGGADMVDQACELSKRPHVIVGTPGRVKDHLN 179
Query: 195 EDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254
V + LVLDEAD++L++ +E+E+ + + L RQTLLFSAT+ + + L
Sbjct: 180 NTKGFQLV--KLHALVLDEADKMLEMDYEKEIDAILEHLTYKRQTLLFSATLNTKIDRLQ 237
Query: 255 ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
+ S E + TVETLKQ YIF P YL LS+ I ++F +
Sbjct: 238 KASLRDPVLLEVHRKNTTVETLKQYYIFAPFAQMLPYLHLYLSRETGNHI---LVFCRSA 294
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
H L+L L L +A+ L Q R AL +FK G+ IL+ TDVA RGLDIP D
Sbjct: 295 AVVHRLTLTLRVLGHQALPLMGRMDQRNRNIALTKFKEGKIRILVCTDVAQRGLDIPHTD 354
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
+V+N+ +P DY+HRVGRTARAG G AV+ ++Q D+ L+ +EA G + EE+ +
Sbjct: 355 VVVNFALPDRVEDYIHRVGRTARAGAQGKAVNVISQYDIVLLQRVEASTGVKCEEWPISD 414
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
+V + + RV A + A ++ + E K ++ +Q
Sbjct: 415 GDVGAVLQRVEDAEQEAVREMRESDQEAKFEKEARQ 450
>gi|297736067|emb|CBI24105.3| unnamed protein product [Vitis vinifera]
Length = 536
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 216/323 (66%), Gaps = 7/323 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LG+ E V+ C+ LG + P+ +Q IP LEGKD++GLAQTGSGKT AFALPIL
Sbjct: 10 SFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQ 69
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P + A V++PTRELA Q+AEQF+ALGSG+ L+C V+VGG+D QA +L RPH
Sbjct: 70 ALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPH 129
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
+V+ TPGR L++ + RT K+LVLDEADR+L+ FE+ + + +P+ R+T
Sbjct: 130 IVVGTPGR---LMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRERKT 186
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT ++ L E + TV+TLKQQY F+P K+ YL+++L+++
Sbjct: 187 YLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVYILTEL 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+ ++F TC + LL+LLL L A+ + SQ++RL AL++FK+G+ IL+
Sbjct: 247 SG---STTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNILI 303
Query: 360 ATDVASRGLDIPTVDLVLNYDIP 382
TDVASRGLDIP+VD+V+NYDIP
Sbjct: 304 CTDVASRGLDIPSVDMVINYDIP 326
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
+ +PR DY+HRVGRTARAGR G+A+S V Q +++ +IE ++GK+L EF +E+EVL
Sbjct: 423 FTLPRVFGDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVL 482
Query: 439 SDITRVYKARRVATMKLMDDGFEEKAK---ERKKQKLKMLAEKGSLKKRSEKRKK 490
+ RV +A+R++ MK+ + G ++K + E +++ + LA K K S+K KK
Sbjct: 483 LLLERVTEAKRISQMKVKETGGKKKRRGGDEGEEEIDRYLASKNG--KSSKKLKK 535
>gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H]
gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H]
Length = 546
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 156/423 (36%), Positives = 244/423 (57%), Gaps = 12/423 (2%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
++ D TF L + E +Q+ ELG ++PT +Q +P + +D++GL++TGSGKT
Sbjct: 131 DANEADERTTFRDLNICEEILQSIDELGWKKPTAIQRKMLPCAFQQRDIIGLSETGSGKT 190
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
A F +PIL L + ALVI+PTREL Q+A+ F+ALGS L + + GG+D++TQ
Sbjct: 191 ACFIIPILQELRQKRQSFFALVISPTRELCIQIAQHFQALGSNLLVNICTIFGGVDIVTQ 250
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
+ +L +P+++++TPGRI L K+LV DEAD++L + FE + +
Sbjct: 251 SLNLAKKPNIIVSTPGRILDHLNNTKGFN--LKNLKYLVFDEADKLLSLDFEASINKLLL 308
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP+ R T LFSATMT + L + S E + T TL + YIFIP K Y
Sbjct: 309 ILPQKRTTFLFSATMTKSVAKLKKASLKNPIKIEVSNKYSTASTLIENYIFIPLKYKYTY 368
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L + R IIF +TC + ++ L +++ LH +Q+QRLS+L+ FK
Sbjct: 369 LCSLCFHFSS---RCIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFK 425
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
S + IL++T V +RGLD+ + +V+N+D+ ++Y+HRVGRTARAGR G +++FVTQ
Sbjct: 426 SKRYNILISTQVGARGLDLKDIKIVINFDLCS-CKEYIHRVGRTARAGRTGKSITFVTQY 484
Query: 412 DVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
DV+ IE ++ K++++F E E +VL +Y + V ++L D +E ++
Sbjct: 485 DVENFLAIEKMLNKKIDKFNELDENDVL-----LYHEQTVEALRLADTEMKENQDLYRRG 539
Query: 471 KLK 473
K K
Sbjct: 540 KFK 542
>gi|429861232|gb|ELA35928.1| ATP-dependent RNA helicase dbp8 [Colletotrichum gloeosporioides
Nara gc5]
Length = 520
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 181/439 (41%), Positives = 257/439 (58%), Gaps = 29/439 (6%)
Query: 49 PDPNSTT--TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
P N+ T TD +F+ L + W VQ+ + ++RPT +Q CIP+IL+G+D +G ++T
Sbjct: 96 PSQNAITAPTDPNTSFSSLNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRT 155
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKT AFA+PIL + AEDP + A+V+TPTRELA Q+ EQFKA+ + L+ ++ GG
Sbjct: 156 GSGKTVAFAVPILQKWAEDPTAIFAVVLTPTRELALQIFEQFKAISAPQSLKAILITGGS 215
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
D+ QA +L RPHVVIATPGR+ + L + + DV EE L
Sbjct: 216 DMRPQAIALAQRPHVVIATPGRLADHIRTS-------GEDTICGLRRVNMIPDV--EECL 266
Query: 227 RVVFQCLPKN--RQTLLFSATMTSDLQTLLEL----SANKAYFYEA-YEGFKTVETLKQQ 279
V LP + RQTLLF+AT+T +++ L ++ + E + TL Q
Sbjct: 267 SV----LPPSSQRQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQSLAIPATLSQM 322
Query: 280 YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339
++ +P ++ YL H + +S IIF + + L LL L+ +LHS
Sbjct: 323 HLQVPVTHREHYL-HTFLLTDGNADKSIIIFCNRTSTADYLHHLLRLLEHRVTSLHSGLP 381
Query: 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399
Q QR+ L RF++ A IL+ATDVASRGLDIP V LV+NYDIPR P DY+HRVGRTARAG
Sbjct: 382 QRQRVDNLGRFRAA-ARILVATDVASRGLDIPEVALVINYDIPRNPDDYIHRVGRTARAG 440
Query: 400 RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK----EQEVLSDITRVYKARRVATMKL 455
R G AV+FV Q DV+L+ IE VG+Q+E ++ + E VL D +V ++ +
Sbjct: 441 RKGEAVTFVGQRDVELVLAIEGRVGRQMEAWKEEGVNLETRVLRDALKVVSEKKREALLE 500
Query: 456 MDDGFEEKAK-ERKKQKLK 473
+++G E K +R KQKL+
Sbjct: 501 LEEGREVGGKRKRAKQKLR 519
>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
Length = 483
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 239/403 (59%), Gaps = 7/403 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
D N + +F+ L + E +Q+ KELG +PT +Q +P + + +D++GL++TGSG
Sbjct: 87 DTNENEQNEITSFSQLNICEEVLQSIKELGWEKPTLIQQKVLPLVFQKRDIIGLSETGSG 146
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTA F +PIL L AL+I+PTREL Q+A+ +ALGS L + + GG+D++
Sbjct: 147 KTACFIIPILQELKYKKQSFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIV 206
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
TQ+ +L +P+++I+TPGRI L K+LV DEAD++L + FE + +
Sbjct: 207 TQSLNLAKKPNIIISTPGRILDHLNNTKGFN--LKNLKYLVFDEADKLLSLDFESSINKL 264
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LP NR T LFSATMT + L + S E + TV+TL + YIF+P K
Sbjct: 265 LLILPNNRITFLFSATMTKSVAKLKKASLKNPIKIEVSNKYSTVKTLIETYIFLPLKYKY 324
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL + + I IIF +TC + L+ L +++ LH +Q+QRLS+L+
Sbjct: 325 TYLCSLCFYFTNKNI---IIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNL 381
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+ + IL++T V +RGLD+ + +V+N+D+ ++Y+HRVGRTARAG+ G +++FVT
Sbjct: 382 FKTNKYNILISTQVGARGLDLQNIKIVINFDLCS-CKEYIHRVGRTARAGKTGKSITFVT 440
Query: 410 QNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVA 451
Q DV+ IE + K++++F + E +VL T+ +A R++
Sbjct: 441 QYDVEAFLTIEKQLNKKIDKFTDIDEHDVLVYHTQALEALRLS 483
>gi|323445520|gb|EGB02089.1| hypothetical protein AURANDRAFT_8983 [Aureococcus anophagefferens]
Length = 379
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 222/383 (57%), Gaps = 21/383 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGLA W V +C LGM P+ +Q IP L G VLG+A+TGSGKTAAFALPIL
Sbjct: 1 FADLGLAPWVVASCGALGMAVPSAIQRGAIPATLRGDHVLGVAETGSGKTAAFALPILDA 60
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN-RPH 180
L DP+GV AL + P+RELA QLA+QF G+ +R V GG+D + Q L + RPH
Sbjct: 61 LFRDPFGVFALCVAPSRELAAQLADQFAVFGARQRVRVACVTGGVDGVAQGLELASGRPH 120
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL------DVG-FEEELRVVFQCL 233
VV+ TPGR+ + E ++ FLVLDEADR+L DVG + +R +
Sbjct: 121 VVVGTPGRLAEVCER-CEVAATLRCAAFLVLDEADRLLSPSLGPDVGRVDAAVRGAAR-R 178
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P R+ LL+SAT + L +A A + L +Y+ P VK Y
Sbjct: 179 PGARRDLLYSATRSEALDA--RAAALGATVVDRGSPAAVPAGLDAEYVLCPNRVKYAYFA 236
Query: 294 HVLSKMEDMGI---------RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRL 344
+L+ + +G RSAI+F TCR H + LL+ L +A LHS +RL
Sbjct: 237 RLLAALGLLGEGADAAGPRPRSAIVFAQTCRRAHDVHALLDALGADAACLHSKLGMRRRL 296
Query: 345 SALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA 404
+AL +F IL+ATDVASRGLD+P VDLV+N+D+PR DYVHRVGR ARAGR GLA
Sbjct: 297 AALGKFAQRSCAILVATDVASRGLDLPAVDLVVNFDMPRDADDYVHRVGRCARAGRRGLA 356
Query: 405 VSFVTQNDVDLIHEIEAVVGKQL 427
VS VTQ D+ + +EA +G +L
Sbjct: 357 VSVVTQRDLGWLAAVEARLGAKL 379
>gi|68071817|ref|XP_677822.1| RNA helicase [Plasmodium berghei strain ANKA]
gi|56498080|emb|CAH95521.1| RNA helicase, putative [Plasmodium berghei]
Length = 499
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 254/434 (58%), Gaps = 11/434 (2%)
Query: 30 EPEPESKNAKTTQLEK----FTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTP 85
+ EP + ++ ++LE N + T +F+ L + E +Q+ +ELG +PT
Sbjct: 59 QDEPINNDSNQSELEHNPLDHENEQNQDSETKEITSFSQLNICEEILQSIQELGWEKPTL 118
Query: 86 VQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145
+Q +P + + +D++GL++TGSGKTA F +PIL L AL+I+PTREL Q+A
Sbjct: 119 IQQKVLPLMFQKRDIIGLSETGSGKTACFIIPILQELKLKKQNFFALIISPTRELCIQIA 178
Query: 146 EQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSR 205
+ +ALGS L + + GG+D++TQ+ +L +P+++I+TPGRI L
Sbjct: 179 QNAQALGSNLLINICTIFGGVDIVTQSLNLAKKPNIIISTPGRILDHLNNTKGFN--LKN 236
Query: 206 TKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYE 265
K+LV DEAD++L + FE + + LPKNR T LFSATMT + L + S E
Sbjct: 237 LKYLVFDEADKLLSLDFESSINKLLLILPKNRITFLFSATMTKSVAKLKKTSLKNPIKIE 296
Query: 266 AYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE 325
+ TV+TL + YIF+P K YL + + I IIF +TC + L+
Sbjct: 297 VSNKYSTVKTLIENYIFLPLKYKYTYLCSLCFYYTNKNI---IIFSNTCATAQKLNFFCR 353
Query: 326 ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP 385
L +++ LH +Q+QRLS+L+ FK+ + IL++T V +RGLD+ + +V+N+D+
Sbjct: 354 NLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILISTQVGARGLDLQNIKIVINFDLCS-C 412
Query: 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRV 444
++Y+HRVGRTARAG+ G +++FVTQ DV+ IE + K++++F + E +VL +
Sbjct: 413 KEYIHRVGRTARAGKTGKSITFVTQYDVETFLTIEKQLNKKIDKFTDIDEHDVLVYHNQA 472
Query: 445 YKARRVATMKLMDD 458
+A R++ +++ ++
Sbjct: 473 LEALRLSEIEMKEN 486
>gi|340057234|emb|CCC51576.1| putative DEAD box RNA helicase [Trypanosoma vivax Y486]
Length = 509
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/426 (39%), Positives = 246/426 (57%), Gaps = 9/426 (2%)
Query: 48 NPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
PD VTF LGL E + CKE G PT +Q +P + EG+DV+G+AQTG
Sbjct: 25 GPDLLENEESKDVTFQQLGLCEELILACKEAGWSMPTRIQAATVPVVREGRDVIGVAQTG 84
Query: 108 SGKTAAFALPILHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVG 164
SGKT A+ LP++ L ++ PY + LV+ PTRELA Q+ QF LG + LR +VG
Sbjct: 85 SGKTGAYVLPLVDWLLTQSKVPY-LSVLVMVPTRELAQQVTAQFVMLGRSVGLRVVTLVG 143
Query: 165 GMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224
G+D++ QA L RPHVV+ TPGR+K L V + LVLDEAD++L++ +E+
Sbjct: 144 GVDMVDQACDLSKRPHVVVGTPGRVKDHLNNTKGFQMV--KLHALVLDEADKMLEMDYEK 201
Query: 225 ELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP 284
E+ + + LP +RQTLLFSAT+ + + L + S N + + TV+TLKQ YIF P
Sbjct: 202 EIDAILEHLPHSRQTLLFSATLNTKIDRLQKASLNDPVLLQVHRKNTTVDTLKQFYIFTP 261
Query: 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRL 344
V+ + +H+ E ++F H ++L L L A+ L +Q R
Sbjct: 262 -FVQMLPTLHLYLTRETGN--HILVFCRGAALVHRITLTLRILGHRALPLMGCMTQRNRN 318
Query: 345 SALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA 404
AL +FK G+A IL+ TDVA RGLDIP D+V+N+ +P DY+HRVGRTARAG G A
Sbjct: 319 VALTKFKEGKARILVCTDVAQRGLDIPHTDVVVNFALPDRVEDYIHRVGRTARAGAQGKA 378
Query: 405 VSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
V+ ++Q D+ + ++EA G + EE+ ++ +V + + RV A + A ++ ++ E
Sbjct: 379 VNIISQYDIVSLQKVEASTGVKCEEWPIQDGDVAAVLQRVEDAEQEAVREMRENQQESML 438
Query: 465 KERKKQ 470
K +Q
Sbjct: 439 KMEARQ 444
>gi|399949627|gb|AFP65285.1| DEAD box protein [Chroomonas mesostigmatica CCMP1168]
Length = 398
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 232/379 (61%), Gaps = 5/379 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTF LG+ E + LG ++PT +Q IP L KD++G AQTGSGKT A+ LPI+
Sbjct: 2 VTFKDLGICEQLNRITVSLGYKKPTKIQIFTIPHALNKKDIIGYAQTGSGKTIAYLLPIV 61
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L +L+I P RELA+Q+A F+A G+ +R VVVGG++ Q + P
Sbjct: 62 QNLIIRKSIFNSLIIVPARELAFQIASHFEAFGNIFGIRIAVVVGGINAGPQKALIFMNP 121
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
H++I+TPGR+ L + I + VLDEADR+L + F++E ++ L + +Q+
Sbjct: 122 HILISTPGRLVDHLAKT--IKLKLDKISIFVLDEADRLLHLDFKKEFLIILSELSRTKQS 179
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS ++ L + E ++ +K V+TL Q YIFIP+ K++Y + + +
Sbjct: 180 FLFSATMTSKIEKLQKNFMKAPVKIEIHQKYKAVKTLIQNYIFIPRKFKEIYFVFLCN-- 237
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G S + FV T + ++LL++ L + +H QS+R LH+FK G+ +L+
Sbjct: 238 EFIG-SSILAFVDTQKYAEKITLLVKLLGFKGGCIHGGLKQSKRFENLHKFKLGEIKLLI 296
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATD+A+RGLDIP VDLV+N+D+P + ++Y+HRVGRTARAG G A++ +TQ DV +I
Sbjct: 297 ATDLAARGLDIPCVDLVINFDLPSFAKEYIHRVGRTARAGNSGRAINLITQYDVSSCQKI 356
Query: 420 EAVVGKQLEEFECKEQEVL 438
E+++G++ E + + VL
Sbjct: 357 ESLIGEKFIELKYNPKFVL 375
>gi|82915130|ref|XP_728973.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23485712|gb|EAA20538.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 517
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/414 (36%), Positives = 245/414 (59%), Gaps = 11/414 (2%)
Query: 50 DPNSTTTDS----TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
+PN T D+ +F L + E +Q+ KELG +PT +Q +P + + +D++GL++
Sbjct: 94 EPNETGNDAEQNEITSFEQLNICEEVLQSIKELGWEKPTLIQQKVLPIVFQKRDIIGLSE 153
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TGSGKTA F +PIL L AL+I+PTREL Q+A+ +ALGS L + + GG
Sbjct: 154 TGSGKTACFIIPILQELKIKKQSFFALIISPTRELCIQIAQNAQALGSNLLINICTIFGG 213
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225
+D++TQ+ +L +P+++I TPGRI L K+L+ DEAD++L + FE
Sbjct: 214 VDIVTQSLNLAKKPNIIIGTPGRILDHLNNTKGFN--LKNLKYLIFDEADKLLSLDFESS 271
Query: 226 LRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285
+ + LPKNR T LFSATMT + L + S + + TV+TL + YIF+P
Sbjct: 272 INKLLLILPKNRITFLFSATMTKSVSKLKKASLKNPIQIQVSNKYSTVKTLIETYIFLPL 331
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
K YL + + I IIF +TC + L+ L +++ LH +Q+QRLS
Sbjct: 332 KYKYTYLCSLCFYFTNKNI---IIFSNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLS 388
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
+L+ FK+ + IL++T V +RGLD+ + +V+N+D+ ++Y+HRVGRTARAG+ G ++
Sbjct: 389 SLNLFKTNKYNILISTQVGARGLDLKNIKIVINFDLCS-CKEYIHRVGRTARAGKTGKSI 447
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDD 458
+FVTQ DV+ IE + K++++F + E +VL + +A R++ +++ ++
Sbjct: 448 TFVTQYDVETFLTIEKQLNKKIDKFTDIDEHDVLMYHNQTLEALRLSELEMKEN 501
>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 539
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 242/415 (58%), Gaps = 12/415 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+F L + E +Q+ +ELG ++PT +Q +P + +D++GL++TGSGKTA F +PIL
Sbjct: 132 ASFRELNICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIPIL 191
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L E ALVI+PTREL Q+A+ F+ALGS L + + GG+D++TQ+ +L +P
Sbjct: 192 QELREKRQSFFALVISPTRELCIQIAQHFQALGSNLLINICTIFGGVDIVTQSLNLAKKP 251
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
+++++TPGRI L K+LV DEAD++L + FE + + LP+ R T
Sbjct: 252 NIIVSTPGRILDHLNNTKGFN--LKNLKYLVFDEADKLLSLDFEASINKLLLILPEKRIT 309
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMT + L + S E + T TL + YIFIP K YL +
Sbjct: 310 FLFSATMTKSVAKLKKASLKNPITVEVSSKYSTASTLIENYIFIPLKYKYTYLCSLCFHF 369
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
RS IIF +TC + ++ L +++ LH +Q+QRLS+L+ FKS + IL+
Sbjct: 370 SS---RSIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSKRYNILI 426
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+T V +RGLD+ + +V+N+D+ ++Y+HRVGRTARAGR G +++FVTQ DV+ I
Sbjct: 427 STQVGARGLDLKDIRIVINFDLCS-CKEYIHRVGRTARAGRTGKSITFVTQYDVESFLAI 485
Query: 420 EAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLK 473
E ++ K++++F E E + L +Y + V ++L D +E ++ K K
Sbjct: 486 EKMLNKKIDKFSELDENDAL-----LYHEQTVEALRLADTEMKENQDLYRRGKFK 535
>gi|440302660|gb|ELP94967.1| ATP-dependent RNA helicase DBP8, putative [Entamoeba invadens IP1]
Length = 454
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 171/431 (39%), Positives = 251/431 (58%), Gaps = 12/431 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF GLG+ + ++T + PT +Q CIP +LE K+V+G A+TGSGKTAAFALPI+H
Sbjct: 31 TFDGLGIHPFMLKTLNNFKIITPTKIQQLCIPPLLEYKNVIGGAETGSGKTAAFALPIIH 90
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L+EDPY ALV+TPTRELA Q+ +QF+ G ++++ VVGG+D K L RPH
Sbjct: 91 HLSEDPYTGFALVLTPTRELAIQICDQFRVFGESINIKVVQVVGGVDDNMVLKLLELRPH 150
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD--VGFEEELRVVFQCLPKNRQ 238
V+++TPG++ LL + P F+ K+ +LDEADR+LD G ++ + +PKN
Sbjct: 151 VLVSTPGKLVSLLG---NFPFGFADAKYFILDEADRLLDEASGMLNDIITIKNKMPKNVT 207
Query: 239 TLLFSATMTSDLQTLLELSAN-KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
LFSAT + L+ + L + A K E +Q Y+F+P K YL +V +
Sbjct: 208 FGLFSATTDTILKKIEPLQIDPPPIILRAGIQQKLPEKCQQLYMFVPAYAKHTYLAYVAN 267
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ IIF S+ + +L+ L+ + LHS Q R S L +F+SG+A +
Sbjct: 268 N------KKCIIFCSSVPRTETIFRMLKSLEFKVAVLHSVLPQHVRESNLAQFRSGEADV 321
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+ASRGLDIP V LV+NYD+P DY+HR GRTARAG+ G +S V Q DVD +H
Sbjct: 322 LVATDLASRGLDIPDVPLVINYDMPWTAEDYIHRSGRTARAGKQGRCISIVDQYDVDRVH 381
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IE+ + L+++E E +V+ +T+ A+ +A + L D +K +K
Sbjct: 382 LIESQLTITLKKYEVNEADVMKLLTKTSNAKEIAFISLKDSEIMKKVNFERKMGRNTKGS 441
Query: 478 KGSLKKRSEKR 488
+ + K +KR
Sbjct: 442 QQAAHKEVKKR 452
>gi|167539739|ref|XP_001741236.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
gi|165894254|gb|EDR22313.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
SAW760]
Length = 406
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 153/385 (39%), Positives = 226/385 (58%), Gaps = 22/385 (5%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T TF LGL ++ + LG ++PT + + SGKTA+F
Sbjct: 4 TASKQKTFKDLGLIPEVLKVVEYLGYKKPTKISRKFYSR--------------SGKTASF 49
Query: 115 ALPILHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLT 170
LP++ L E ++I PTRELA Q+ E +G L L ++VGGMD++
Sbjct: 50 LLPMIQHLLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMK 109
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q+ L RPHV++ TPGRI ++ + + KFLV+DEAD++L++ F E+ +
Sbjct: 110 QSVQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLI 169
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ LP R T+LFSATM++ ++ L S + E + ++TV+TL+Q+Y FIP +D
Sbjct: 170 EKLPSQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRD 229
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
YL+ +L + E +S IIF C C L ++L +L A+ LH SQ +RL AL +
Sbjct: 230 GYLLSILKETEG---KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEK 286
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FKSG+ IL+ATDVASRGLDIP VD+V+NYD P P+DY+HRVGRTARAG+ G A++ VT
Sbjct: 287 FKSGKRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVT 346
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKE 434
Q ++L IE ++ K+L E++ +
Sbjct: 347 QYSIELYQRIETMIEKKLNEYKAND 371
>gi|19074653|ref|NP_586159.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
GB-M1]
gi|74621115|sp|Q8SR63.1|RRP3_ENCCU RecName: Full=ATP-dependent rRNA helicase RRP3
gi|19069295|emb|CAD25763.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
GB-M1]
gi|449330220|gb|AGE96481.1| putative ATP-dependent RNA helicase [Encephalitozoon cuniculi]
Length = 400
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 158/386 (40%), Positives = 226/386 (58%), Gaps = 6/386 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + E ++TC+E G+ RPT VQ IP +L G DV+ ++QTGSGKT AF LPI+
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L + LV+ PTREL+ Q+AE F LR ++VGG + QA L RPHV
Sbjct: 63 LLQKNRSFYCLVVAPTRELSSQIAECFNMF-QATGLRVCLLVGGANFNVQANQLSKRPHV 121
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ TPGRI + + R + VLDEADR + F E+L + L + RQTLL
Sbjct: 122 VVGTPGRIAEHVLKTKSFRT--ERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLL 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
F+ATM+ ++ L + E ++TV LK+ Y+F+ K+ L+ +L +
Sbjct: 180 FTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQG 239
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
M S I+FVS C + ++SL L L + ALH SQ +R A+ FK + +L+ T
Sbjct: 240 M---SVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCT 296
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
D+ SRGLDI VDLV+N+D+P+ +DY+HRVGRTARAGR G A++ VTQ DV+ I +IE
Sbjct: 297 DLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIEF 356
Query: 422 VVGKQLEEFECKEQEVLSDITRVYKA 447
+ K+LEEF+ ++ + R+ +A
Sbjct: 357 TLEKKLEEFKMMKKNFGTICARIEEA 382
>gi|444518869|gb|ELV12436.1| putative ATP-dependent RNA helicase DDX47 [Tupaia chinensis]
Length = 428
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/421 (39%), Positives = 246/421 (58%), Gaps = 51/421 (12%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQS----------------- 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
ATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 124 -------ATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 174
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 175 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 234
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ ++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 235 N---ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 291
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG---------GLAVSF 407
ILLATDVASRGLDIP VD+V+N+DIP + ++ G G SF
Sbjct: 292 ILLATDVASRGLDIPHVDVVVNFDIPTH-----------SKFGSGEQLYYQPTKACQFSF 340
Query: 408 VTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
+ + DV+L IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R
Sbjct: 341 L-RYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRTR 398
Query: 468 K 468
+
Sbjct: 399 E 399
>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 441
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/426 (37%), Positives = 251/426 (58%), Gaps = 28/426 (6%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG E+ QTCKE+G+ +PT VQ C+ +I+ G + + ++QTG+GKTAAFALPI+
Sbjct: 5 FTSLGCPEFIYQTCKEIGISKPTAVQQACVKQIITGHNCIVISQTGTGKTAAFALPIIST 64
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L++DPYG+ ALVI+PTRELA Q+ +QFK G G++ ++GG+ + QA +L PH+
Sbjct: 65 LSKDPYGIYALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASALEKNPHI 124
Query: 182 VIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V+ATPGRI L FS ++LVLDE DR+ G+ +++ + + LP+ RQT
Sbjct: 125 VVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFKDGYWDDVLEIIKYLPEKRQT 184
Query: 240 LLFSATMTS--DLQTLLEL----------SANKAYF--------YEAYEGFK-TVETLKQ 278
L FSAT + DL T++ S K++F +E + K +E +K
Sbjct: 185 LCFSATKSDQVDLLTIMTKPPSTSSCPLPSVGKSWFSDDKLTFYWEPTDDLKPKIEHVK- 243
Query: 279 QYIFIPKNVKDVYLMHVLSK-MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSF 337
+ + ++VYLM ++ K ME + I+F ST + ++L+L + +HS
Sbjct: 244 --VLVQDEGREVYLMIIIQKLMEADLYKQVIVFASTKEAAQTITLILRNFSYKTAVMHSD 301
Query: 338 KSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTAR 397
+S+RL L F++G+ IL+ATDVA+RGLDIP VD V++++ P+ YVHR GRT R
Sbjct: 302 MQESERLKELEEFRAGRQRILVATDVAARGLDIPFVDNVIHFNPPQNAATYVHRAGRTGR 361
Query: 398 AGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
AGR G ++ FV+ + + EIE +G+Q E + ++ E + + V+ A++ A + +
Sbjct: 362 AGREGRSILFVSGREKKIEQEIEKEIGQQFTELKVEKSE-MKEKMNVFWAKKDAKIAMSQ 420
Query: 458 DGFEEK 463
F ++
Sbjct: 421 SDFGKR 426
>gi|237841945|ref|XP_002370270.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211967934|gb|EEB03130.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221482742|gb|EEE21080.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
gi|221503065|gb|EEE28771.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 698
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 164/435 (37%), Positives = 251/435 (57%), Gaps = 10/435 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ ++T L + P+P+Q +P L GK+V GLA TGSGKT + P+L
Sbjct: 257 TFASLGVPPALIRTAASLHIFHPSPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQ 316
Query: 121 RLAE-DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
R+ D + + LV+ P RELA Q+ +QF+ G L +R +++GG DL+ + K L P
Sbjct: 317 RIGRGDGHAFMGLVLLPARELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQCP 376
Query: 180 HVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---K 235
H+VIATPGR+ ++ DP + S LVLDEADR+L FE++L+ + C+P +
Sbjct: 377 HIVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSSQ 436
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAY-FYEAYEGFK-TVETLKQQYIFIPKNVKDVYLM 293
RQTLLFSAT++ L L + A +A+ + + L Y+F+P ++ +YL+
Sbjct: 437 GRQTLLFSATVSPALLALQRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIYLL 496
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
++L I+F + R + LE L Q A LHS Q +R++ L +F+S
Sbjct: 497 YLLEHTSPFCSDRGIVFAGSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKFRSE 556
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ +L+ TDVA RGLD+P V+ V+N +P +DYVHR GRTARAGR G+A++FV V
Sbjct: 557 TSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPKSV 616
Query: 414 DLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+H IEA++ QL+ EQ+VL ++ K + + + L + GF+EKA E+ ++
Sbjct: 617 RAVHRIEALINTQLQPLPSINEQDVLKFLSNYSKVVQKSLLFLNEIGFDEKA-EQHEEYT 675
Query: 473 KMLAEKGSLKKRSEK 487
K E K+R++K
Sbjct: 676 KAFKE-ARRKRRAQK 689
>gi|157876834|ref|XP_001686759.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
gi|68129834|emb|CAJ09140.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
Length = 527
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 170/423 (40%), Positives = 247/423 (58%), Gaps = 12/423 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL + C + G + PT +Q I EG+D++G+AQTGSGKT A+ALP+++
Sbjct: 54 TFQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTGAYALPLVN 113
Query: 121 RL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + PY + LV+ PTRELA Q+ QF LG + LR +VGG D++ QA L
Sbjct: 114 WLLAQRKTPY-LSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSK 172
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPHVV+ TPGR+K L V + LVLDEAD++LD+ +E+E+ + + LP+NR
Sbjct: 173 RPHVVVGTPGRVKDHLSNTKGFKLV--KLHALVLDEADKMLDMNYEKEIDAILEQLPQNR 230
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T+LFSAT+++ + L + S + + TV+TLKQ YIF P YL L+
Sbjct: 231 RTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLFLT 290
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
K I +IF + H ++L L L A+ L QS R AL +FK G+ +
Sbjct: 291 KETGNHI---LIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRM 347
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVA RGLDIP D+V+N+ +P + DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 348 LICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQ 407
Query: 418 EIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
+IE G + E+ E EV + RV A + A ++ +D EE++ E++ ++L A
Sbjct: 408 KIEQQTGVKCVEYPSLPESEVQLVLQRVEDAEQEAIREIREDA-EERSLEKESRQLTT-A 465
Query: 477 EKG 479
KG
Sbjct: 466 RKG 468
>gi|146104251|ref|XP_001469775.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
gi|398024294|ref|XP_003865308.1| DEAD box RNA helicase, putative [Leishmania donovani]
gi|134074145|emb|CAM72887.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
gi|322503545|emb|CBZ38631.1| DEAD box RNA helicase, putative [Leishmania donovani]
Length = 527
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 171/425 (40%), Positives = 248/425 (58%), Gaps = 12/425 (2%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TF LGL + C + G + PT +Q I EG+D++G+AQTGSGKT A+ALP+
Sbjct: 52 TKTFQDLGLCQELCTACADAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPL 111
Query: 119 LHRL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
++ L + PY + LV+ PTRELA Q+ QF LG + LR +VGG D++ QA L
Sbjct: 112 VNWLLAQRKTPY-LSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACEL 170
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
RPHVV+ TPGR+K L V + LVLDEAD++LD+ +E+E+ + + LP+
Sbjct: 171 SKRPHVVVGTPGRVKDHLSNTKGFKLV--KLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
NR+T+LFSAT+++ + L + S + + TV+TLKQ YIF P YL
Sbjct: 229 NRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+K I +IF + H ++L L L A+ L QS R AL +FK G+
Sbjct: 289 LTKETGNHI---LIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKV 345
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ TDVA RGLDIP D+V+N+ +P + DY+HRVGRTARAG G AV+ ++Q D+ L
Sbjct: 346 RMLICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVL 405
Query: 416 IHEIEAVVGKQLEEFE-CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
+ +IE G + E+ E EV + RV A + A ++ +D EE++ E++ ++L
Sbjct: 406 LQKIEQQTGVKCVEYPFLPESEVQLVLQRVEDAEQEAIREIREDA-EERSLEKESRQLTT 464
Query: 475 LAEKG 479
A KG
Sbjct: 465 -ARKG 468
>gi|124801418|ref|XP_001349688.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
gi|3845295|gb|AAC71961.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
gi|156072124|gb|ABU45413.1| DEAD-box helicase 2 [Plasmodium falciparum]
Length = 562
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/401 (37%), Positives = 238/401 (59%), Gaps = 7/401 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
VTF L + E +++ KELG ++PT +Q +P KD++GL++TGSGKTA F +PI
Sbjct: 155 NVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPI 214
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L + ALVI+PTREL Q+++ F+ALG L + + GG+D++TQ+ +L +
Sbjct: 215 LQDLKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKK 274
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
P+V+++TPGRI L K+LV DEAD++L FE + + LP NR
Sbjct: 275 PNVIVSTPGRILDHLNNTKGFN--LKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRI 332
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT ++ L + E + TV TL + YIF+P K YL +
Sbjct: 333 TFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFH 392
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ R+ IIF +TC + L+ L +++ LH +Q+QRLS+L+ FK + IL
Sbjct: 393 YQ---TRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNIL 449
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
++T V +RGLD+ + +V+N+DI ++Y+HRVGRTARAGR G +++FVTQ DV+
Sbjct: 450 ISTQVGARGLDLQDIKIVINFDICS-CKEYIHRVGRTARAGRSGKSITFVTQYDVENFLA 508
Query: 419 IEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDD 458
IE + K++++F + E +VL + +A R++ +++ ++
Sbjct: 509 IEKQLNKKIDKFTDLDENDVLLYHEQTIEALRLSEIEMKEN 549
>gi|401396012|ref|XP_003879732.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
gi|325114139|emb|CBZ49697.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
Length = 733
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 257/455 (56%), Gaps = 11/455 (2%)
Query: 20 KTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELG 79
+ RS+ E E E S A T+ ++ T+++ +FA LG+ ++T L
Sbjct: 254 RKRSRAEAVSEDESSSSPASETEEPSAAG---SAWTSENGPSFASLGVPRALIRTAASLH 310
Query: 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-DPYGVLALVITPTR 138
+ P+P+Q +P L GK+V GLA TGSGKT + P+L R+ + + + LV+ P R
Sbjct: 311 IFHPSPIQVLALPHALRGKNVCGLAPTGSGKTLGYCWPLLQRIGRGEGHAFMGLVLLPAR 370
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA Q+ +QF+ G+ L R +++GG DL+ + K L PH+VI TPGR+ ++ P+
Sbjct: 371 ELAIQVLDQFRIYGAQLGARVCLLLGGRDLVEEGKLLDQCPHIVIGTPGRVSDHVQNAPE 430
Query: 199 -IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---KNRQTLLFSATMTSDLQTLL 254
+ S LVLDEADR+L FE++L+ + C+P + RQTLLFSAT++ L L
Sbjct: 431 RMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILACVPTSSQGRQTLLFSATVSPALLALQ 490
Query: 255 ELSANKAYF-YEAYEGFK-TVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVS 312
+ A +A+ + + L Y+F+P ++ VYL+++L I+F
Sbjct: 491 RRFGDDAMLLVDAHRTNQPALPNLSHFYLFVPARMQPVYLLYLLEHTPPFCSDRGIVFAG 550
Query: 313 TCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372
+ R + LE L Q A LHS Q +R++ L +F+S + +L+ TDVA RGLD+P
Sbjct: 551 SVRQTQQICTTLEILKQAATPLHSLMEQRKRVACLEKFRSETSRLLICTDVAGRGLDLPR 610
Query: 373 VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFEC 432
V+ V+N +P +DYVHR GRTARAGR G+A++FV V +H IEA++ QL+
Sbjct: 611 VEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPKSVRAVHRIEALINTQLQPLSS 670
Query: 433 -KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
EQ+VL ++ K + + + L + GF+EKA++
Sbjct: 671 INEQDVLKFLSNYSKVVQKSLLFLNEIGFDEKAEQ 705
>gi|95007096|emb|CAJ20316.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii RH]
Length = 574
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 164/435 (37%), Positives = 251/435 (57%), Gaps = 10/435 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ ++T L + P+P+Q +P L GK+V GLA TGSGKT + P+L
Sbjct: 133 TFASLGVPPALIRTAASLHIFHPSPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQ 192
Query: 121 RLAE-DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
R+ D + + LV+ P RELA Q+ +QF+ G L +R +++GG DL+ + K L P
Sbjct: 193 RIGRGDGHAFMGLVLLPARELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQCP 252
Query: 180 HVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---K 235
H+VIATPGR+ ++ DP + S LVLDEADR+L FE++L+ + C+P +
Sbjct: 253 HIVIATPGRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSSQ 312
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAY-FYEAYEGFK-TVETLKQQYIFIPKNVKDVYLM 293
RQTLLFSAT++ L L + A +A+ + + L Y+F+P ++ +YL+
Sbjct: 313 GRQTLLFSATVSPALLALQRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIYLL 372
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
++L I+F + R + LE L Q A LHS Q +R++ L +F+S
Sbjct: 373 YLLEHTSPFCSDRGIVFAGSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKFRSE 432
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ +L+ TDVA RGLD+P V+ V+N +P +DYVHR GRTARAGR G+A++FV V
Sbjct: 433 TSRLLICTDVAGRGLDLPRVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPKSV 492
Query: 414 DLIHEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
+H IEA++ QL+ EQ+VL ++ K + + + L + GF+EKA E+ ++
Sbjct: 493 RAVHRIEALINTQLQPLPSINEQDVLKFLSNYSKVVQKSLLFLNEIGFDEKA-EQHEEYT 551
Query: 473 KMLAEKGSLKKRSEK 487
K E K+R++K
Sbjct: 552 KAFKE-ARRKRRAQK 565
>gi|401420084|ref|XP_003874531.1| putative DEAD box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490767|emb|CBZ26031.1| putative DEAD box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 527
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 170/423 (40%), Positives = 247/423 (58%), Gaps = 12/423 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL E C E G + PT +Q I EG+D++G+AQTGSGKT A+ALP+++
Sbjct: 54 TFQDLGLCEELCSACAEAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLVN 113
Query: 121 RL---AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + PY + LV+ PTRELA Q+ QF LG + LR +VGG D++ QA L
Sbjct: 114 WLLTQRKTPY-LSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQACELSK 172
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
RPHV++ TPGR+K L V + LVLDEAD++LD+ +E+E+ + + LP++R
Sbjct: 173 RPHVIVGTPGRVKDHLSNTKGFKLV--KLHALVLDEADKMLDMDYEKEIDAILEQLPQDR 230
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T+LFSAT+++ + L + S + + TV+TLKQ YIF P YL L+
Sbjct: 231 RTMLFSATLSTKIDRLQKASLLDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLFLT 290
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
K I +IF + H ++L L L A+ L QS R AL +FK G+ +
Sbjct: 291 KETGNHI---LIFCRSAALVHKITLALRILGHRALPLMGRMDQSNRNIALTKFKEGKVRM 347
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVA RGLDIP D+V+N+ +P + DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 348 LICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQ 407
Query: 418 EIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA 476
+IE G + E+ E EV + RV A + A ++ +D EE++ E++ ++L A
Sbjct: 408 KIEQQTGVKCVEYPSLAESEVQLVLQRVEDAEQEAIREIREDA-EERSLEKESRQLTT-A 465
Query: 477 EKG 479
KG
Sbjct: 466 RKG 468
>gi|303390992|ref|XP_003073726.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
50506]
gi|303302874|gb|ADM12366.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
50506]
Length = 400
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/370 (41%), Positives = 216/370 (58%), Gaps = 6/370 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + VQ C+ G+ RPT +Q IP +L G D++ ++QTGSGKT AF LPI+ R
Sbjct: 3 FDELNIDDSLVQACQRNGITRPTEIQKQVIPMVLGGNDIIAVSQTGSGKTLAFVLPIVSR 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L LV+ PTREL+ Q+AE F GS LR ++VGG + QA L PH+
Sbjct: 63 LLLKNRSFFCLVVAPTRELSSQIAECFNMFGS-TGLRVCLLVGGTNFNLQANQLSKHPHI 121
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ TPGRI + + R + LVLDEADR + F E+L + + L + RQTLL
Sbjct: 122 VVGTPGRIAEHILKTKSFKA--ERIRKLVLDEADRFFEQDFVEDLETIIRSLREKRQTLL 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
F+ATM++++ L K EG++TV LK+ Y F K L+ L
Sbjct: 180 FTATMSNEISKLSSSILIKPKTIRVVEGYETVSALKEYYFFTAMKWKSSALVEFLEMNPG 239
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
S I+FVS C + ++SL L +L + AL+ SQ +R + FK + ++L+ T
Sbjct: 240 A---STIVFVSMCITARVMSLALSKLGFHSEALYGELSQEKREETMRMFKENKFSVLVCT 296
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DV SRGLDI VDLV+N+D+P+ +DYVHRVGRTARAGR G A++ VTQ DV+ + +E
Sbjct: 297 DVGSRGLDISHVDLVINFDVPKSGKDYVHRVGRTARAGRAGTAITLVTQYDVEQLQRVEF 356
Query: 422 VVGKQLEEFE 431
V+ K LEEF+
Sbjct: 357 VLKKSLEEFK 366
>gi|56202232|dbj|BAD73664.1| putative DEAD box protein [Oryza sativa Japonica Group]
gi|56202381|dbj|BAD73793.1| putative DEAD box protein [Oryza sativa Japonica Group]
Length = 423
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 234/406 (57%), Gaps = 25/406 (6%)
Query: 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVIT 135
+G + PT +Q IP L+G+DV+G+ QTGSGKTAAFALPI+ L E + A V+
Sbjct: 1 MGWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPCFFACVLA 60
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVG-------------GMDLLTQAKSLMNRPHVV 182
PTRELA Q+A+QF+ALGS + L+C VV G D K +R
Sbjct: 61 PTRELAIQIAKQFEALGSAISLQCSVVWWRSSRACLPEHLRKGFDSWQLWKERNSR---- 116
Query: 183 IATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLF 242
+ TPGR+ L F++ K+LVLDEAD +L V F++ + + +PK R+T LF
Sbjct: 117 VGTPGRLLDHLTNTKGFS--FNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLF 174
Query: 243 SATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDM 302
SATMT ++ L E + V+TL+Q +P KD YL+HVL+KM
Sbjct: 175 SATMTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGS 234
Query: 303 GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362
I ++FV TC S LL+L+L L +A+++ SQ +RL AL+RF++ IL+ TD
Sbjct: 235 MI---MVFVRTCESTRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTD 291
Query: 363 VASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAV 422
VASRGLDI VD+V+NYD P +DY+HRVGRTARAG+ G AVS V Q + + E
Sbjct: 292 VASRGLDIQGVDVVINYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFEGEFFKLTEQF 351
Query: 423 V-GKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKER 467
+ G+++ + E++ R+Y ++R+A + + G+ ++ + R
Sbjct: 352 LGGEEIPARKVDADEIMILHERIYDSKRIALKTMNESGYHKRMRRR 397
>gi|154345774|ref|XP_001568824.1| putative DEAD box RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066166|emb|CAM43956.1| putative DEAD box RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 527
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 164/415 (39%), Positives = 238/415 (57%), Gaps = 8/415 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TF LGL C E G + PT +Q I + EG+D++G+AQTGSGKT A+ALP+
Sbjct: 52 TKTFKDLGLCRELCMACAEAGWQHPTRIQASTITVVAEGRDLIGVAQTGSGKTGAYALPL 111
Query: 119 LHRLAEDPYG--VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
++ L P + LV+ PTRELA Q+ QF LG + LR +VGG D++ QA L
Sbjct: 112 VNWLLTQPKTPYLSVLVMVPTRELAQQVTAQFLLLGRSVGLRVATLVGGADMVEQACELS 171
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
RPHV++ TPGR+K L V + LVLDEAD++LD+ +E+E+ + + LP++
Sbjct: 172 KRPHVIVGTPGRVKDHLSNTKGFKLV--KLHALVLDEADKMLDMDYEKEIDAILEQLPQD 229
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T+LFSAT+++ + L + S + + TV+TLKQ YIF P YL L
Sbjct: 230 RRTMLFSATLSTKVDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLFL 289
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+K I +IF + H ++L L L A+ L QS R AL +FK G+
Sbjct: 290 TKETGNHI---LIFCRSAALVHRITLALRTLGHRALPLMGRMDQSNRNIALTKFKEGKVR 346
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ TDVA RGLDIP D+V+N+ +P + DY+HRVGRTARAG G AV+ ++Q D+ L+
Sbjct: 347 MLICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLL 406
Query: 417 HEIEAVVGKQLEEF-ECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
+IE G + E+ E EV + RV A + A ++ +D E ++ +Q
Sbjct: 407 QKIEQQTGVKCVEYPSLPESEVQLVLQRVEDAEQEAIREIREDAGERNLEKESRQ 461
>gi|398803769|ref|ZP_10562787.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096022|gb|EJL86353.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 481
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 166/405 (40%), Positives = 237/405 (58%), Gaps = 23/405 (5%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L+GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRLA--EDP------YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L R+ E+P + V ALV+ PTRELA Q+A+Q + +LR VV GGMD+
Sbjct: 62 LQRMMKHENPSTSPARHPVRALVLLPTRELAVQVAQQVELYAKYTNLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTAELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E T T++Q + + + K
Sbjct: 179 SYLPKQRITLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L +L ++ G++ A +FV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 ALHQIL---KERGMKQAFVFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAVSFV
Sbjct: 296 KKGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAS 355
Query: 411 NDVDLIHEIEAVVGKQLE----EFE-----CKEQEVLSDITRVYK 446
+D L+ +IE ++ ++E EFE KEQ ++D R+Y+
Sbjct: 356 SDNRLVADIEKLIKTKIELEPLEFEEDRPRIKEQGRINDGRRMYR 400
>gi|56758884|gb|AAW27582.1| SJCHGC09528 protein [Schistosoma japonicum]
Length = 454
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 168/444 (37%), Positives = 257/444 (57%), Gaps = 35/444 (7%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+ V+ ++ G+ PT VQ CIP ILEG DV+ A+TGSGKTAAF +PIL
Sbjct: 1 MSFGELGVCPEIVELLRDKGISAPTEVQKGCIPVILEGNDVVACAKTGSGKTAAFLIPIL 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL-----RCEVVV--GGMDLLTQA 172
L + + AL+ITPTRELA+Q+ EQ +GL+L C V+V GG ++ Q+
Sbjct: 61 QSLMTELKPLYALIITPTRELAHQIGEQ----AAGLNLIQGEPLCNVLVITGGRSIIHQS 116
Query: 173 KSLMNRPHVVIATPGRIKVLLE-----EDPDIPP----VFSRTKFLVLDEADRVLDVGFE 223
L PH++++TPGR+ LL ++ ++ SRTK +VLDEADR+L+ F
Sbjct: 117 IDLARSPHIIVSTPGRLADLLRTQIAAQEANVTDKQEWTLSRTKVVVLDEADRLLEDNFG 176
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKA--------YFYEAYEGFKTVET 275
++L ++ + LPK RQTLL A + LE + + A +++ + +
Sbjct: 177 KDLTIIMKALPKRRQTLLLVALSVMQSGSSLEAAKSAACTENRRLLFYWHLSVDYMPICR 236
Query: 276 LKQQYIF---IPKNV---KDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLLSLLLEELD 328
+ F + N K+ +L+H + + S I IF + C+ CHL+ L++ L
Sbjct: 237 GRNSRNFKSVLHSNAPEHKEAFLVHTVDQFLSENPHSLIMIFTNKCKWCHLIGLMMTTLG 296
Query: 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDY 388
++ LHS +Q R+S+L F+S Q +L+ATD+ASRGLD PTVD+V+N+++P P+DY
Sbjct: 297 IKSTLLHSAMTQKNRISSLTLFRSSQIRVLIATDLASRGLDFPTVDIVINHNVPIRPKDY 356
Query: 389 VHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
VHRVGRTARAG+ GLA++ +V + I+ + K+L+ F+ E++V I V AR
Sbjct: 357 VHRVGRTARAGKAGLALTLCDLFEVKRLKAIQTFINKELKIFDVNEKKVAQIIAEVSIAR 416
Query: 449 RVATMKLMDDGFEEKAKERKKQKL 472
R A KL + F+EK + K + L
Sbjct: 417 RDAERKLDEIRFDEKREINKAKNL 440
>gi|328855261|gb|EGG04388.1| hypothetical protein MELLADRAFT_53003 [Melampsora larici-populina
98AG31]
Length = 447
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 179/441 (40%), Positives = 253/441 (57%), Gaps = 26/441 (5%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T ++ TF L + + K L ++ PT +Q IP IL G+D +G +QTGSGKT AF+
Sbjct: 2 TTTSTTFQDLNVHSSLISALKSLSIQSPTEIQAKTIPDILNGRDCIGSSQTGSGKTIAFS 61
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL--HLRCEVVVGGMDLLTQAK 173
+PIL LA+DP AL++TPTRELA+Q++ Q K LGS V+VGG+++ +QA
Sbjct: 62 IPILQGLAKDPSSCYALILTPTRELAFQISSQLKVLGSLAIPGFSSTVIVGGIEMTSQAI 121
Query: 174 SLMNRPHVVIATPGR-IKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L RPHV+IATPGR + L + +I R KFLVLDEADR+L F + L +
Sbjct: 122 ELRKRPHVIIATPGRLVDHLKSSNGEIGNWDLRRCKFLVLDEADRMLTSTFADPLAYLIN 181
Query: 232 CL---PKNRQTLLFSATMTSDLQTLLELSANK---------AYFYEAYEGFKTVETLKQQ 279
P RQTLLF+AT+T + L ANK G E L+Q
Sbjct: 182 HHLPPPSQRQTLLFTATLTEPVLAL----ANKDPPPGKLKPVVHLCGSRGINLPENLRQL 237
Query: 280 YIFIPKNVKDVYLMHVLSKMEDM-GIRSAIIFVSTCRSCHLLSLLLEE----LDQEAVAL 334
Y F+P VK+ YL ++L + + I IIFVS R+ +L L A +L
Sbjct: 238 YSFVPSQVKETYLYYLLLNLNQLTDIPQTIIFVSKPRTAEMLKLAFNSDFLPFKIPACSL 297
Query: 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGR 394
HS +Q QRL A+ F+ + TIL++TD+ SRGLD+ V LV+N+DIP +YVHRVGR
Sbjct: 298 HSNLTQIQRLKAIEDFEERRFTILISTDLGSRGLDLKQVKLVINWDIPLEFNEYVHRVGR 357
Query: 395 TARAG-RGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATM 453
TAR G+++S V +NDVD + IE +G ++EE KE +VL + + KA+R A +
Sbjct: 358 TARGVLSDGVSISLVAENDVDCVLGIEEKMGLKMEELMMKEDKVLEYLNPISKAKREAYL 417
Query: 454 KLMDDGFEEKAKERKKQKLKM 474
+L ++ F EK K K +++K+
Sbjct: 418 ELEENKFGEKQKVNKLKRMKL 438
>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum So ce56]
gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum So ce56]
Length = 478
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 165/370 (44%), Positives = 218/370 (58%), Gaps = 10/370 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA L L E ++ + G PTP+Q IP ILEG D+LG AQTG+GKTAAFALPIL R
Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62
Query: 122 LAED----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
LA+ G+ LV+TPTRELA Q+AE F G L LR VV GG+ Q ++L
Sbjct: 63 LAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEALRR 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V++ATPGR+ L + I P F R LVLDEADR+LD+GF ++R V LP+ R
Sbjct: 123 GVDVLVATPGRLLDLCSQG--IAP-FGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSATM D+ L E T E + Q+ +F+ ++ K L HVL
Sbjct: 180 QTLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVL- 238
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D +R AI+F T + + L EAVA+H KSQ R AL FK G ++
Sbjct: 239 --KDPALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+NYD+P P YVHR+GRTARAG G+A+SF + +
Sbjct: 297 LVATDIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLA 356
Query: 418 EIEAVVGKQL 427
+IE ++ K+L
Sbjct: 357 DIERLIQKRL 366
>gi|358341811|dbj|GAA31574.2| ATP-dependent RNA helicase DDX47/RRP3 [Clonorchis sinensis]
Length = 464
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 156/371 (42%), Positives = 225/371 (60%), Gaps = 13/371 (3%)
Query: 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125
G+ + + K+LG +P+ +Q IP+ L GKDV+GLA+TGSGKTAAFA+PIL L
Sbjct: 21 GICQEILDVIKKLGWSKPSEIQAKTIPQALRGKDVVGLAETGSGKTAAFAIPILQDLISK 80
Query: 126 PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL-MNRPHVVIA 184
P ALV+TPTRELA QL QF LG LR +VGG + Q + L +++ H++I
Sbjct: 81 PKHNFALVLTPTRELALQLKSQFMDLGEVYGLRVICLVGGQHVEDQTRDLKVSKYHIIIG 140
Query: 185 TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244
TPGRI LE D+ + ++LVLDEAD++L+ FE++L + LP N +T L+SA
Sbjct: 141 TPGRICYHLENSKDLR--LNHIRYLVLDEADQMLEDTFEDQLSAIIANLPPNHRTYLYSA 198
Query: 245 TMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI 304
T++ +Q L E+ E + V+ L ++FIP+ +DVYL++ L + +
Sbjct: 199 TLSPKVQKLQEICTRSPIIVEVSLEYSKVKKLDHAFVFIPEQERDVYLVYALKTISKVTN 258
Query: 305 RSAIIFVSTCRSCHLLSLLLEELDQ----EAVALHSFKSQSQRLSALHRFKSGQATILLA 360
I+F +T R ++ LL L Q +AV L+ Q +R ++L F++GQA L+A
Sbjct: 259 SRTIVFTTTWRESFRIASLLNSLSQLLGGKAVPLNGAMQQDKRQNSLFSFRAGQAAFLVA 318
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYP------RDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
TD+ASRGLDIP VDL++NYD+PR P + Y+HRVGRTARAGR G A++ VT
Sbjct: 319 TDLASRGLDIPDVDLIINYDVPRRPSWSDSAKAYIHRVGRTARAGRSGRAITLVTPYSAT 378
Query: 415 LIHEIEAVVGK 425
+ IEA +G+
Sbjct: 379 RLKAIEAALGE 389
>gi|388455396|ref|ZP_10137691.1| ATP-dependent RNA helicase RhlE [Fluoribacter dumoffii Tex-KL]
Length = 461
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 228/383 (59%), Gaps = 10/383 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
++++F+ LGL +Q+ +ELG + P+P+QT IP +L GKDVL AQTG+GKTA+F LP
Sbjct: 38 NSMSFSSLGLIPPLLQSIEELGYKDPSPIQTKAIPIVLAGKDVLASAQTGTGKTASFVLP 97
Query: 118 ILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
+LH L+ P L++TPTRELA Q+ E + G L LR VV GG+ + Q
Sbjct: 98 VLHMLSAKPRAKSNRTRVLILTPTRELASQVHESIREYGRYLSLRSAVVFGGVKINPQMM 157
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L + +++ATPGR+ L ++ F + L+LDEADR+LD+GF ++R + CL
Sbjct: 158 KLRSGVELLVATPGRLLDLFQQRAI---QFDQVDTLILDEADRMLDMGFIHDIRRIINCL 214
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
PKNRQ LLFSAT T +++ L++ N+ + TV +KQ + K+ K L
Sbjct: 215 PKNRQNLLFSATFTDEIRKLVKTILNEPVAIDVTPRNTTVAKIKQTVHPVDKSQKAALLS 274
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
H++ K G ++F T + L L E A A H KSQSQR L FKSG
Sbjct: 275 HLIHK-NKWG--QTLVFSRTKHGANKLVKQLAEAQIYAAAFHGNKSQSQRTKTLEEFKSG 331
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ IL+ATD+A+RG+DI + V+N+D+P+ DYVHR+GRT RAG GLAVS V+ +++
Sbjct: 332 ELHILVATDIAARGIDIEQLPCVVNFDLPQVAEDYVHRIGRTGRAGAPGLAVSLVSADEI 391
Query: 414 DLIHEIEAVVGKQLEEFECKEQE 436
+ + IE ++ +L E ++ E
Sbjct: 392 NQLQAIEKLIQHKLNRIEIEDFE 414
>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 492
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 235/405 (58%), Gaps = 23/405 (5%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L+GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L R+ + P + V ALV+ PTRELA Q+AEQ K +LR VV GGMD+
Sbjct: 62 LQRMLKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKQGVEVLVATPGR---LLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E T T++Q + + + K
Sbjct: 179 SYLPKQRITLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L +L ++ G++ A +FV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 ALHQIL---KERGMKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAVSFV
Sbjct: 296 KKGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAS 355
Query: 411 NDVDLIHEIEAVVGKQLE----EFE-----CKEQEVLSDITRVYK 446
+D L+ +IE ++ ++E EF+ EQ ++D R+Y+
Sbjct: 356 SDQRLVADIEKLIKTKIELEPIEFDEDRPRISEQGRINDGRRMYR 400
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 220/378 (58%), Gaps = 14/378 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LA + E+G TP+Q IP++L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TQSFSELNLAPALAKAVAEMGYETMTPIQAQAIPQVLTGRDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+AEQ K LR VV GGMD+
Sbjct: 62 LQRLLKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTQLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E T T++Q + + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLANSYLQDPITVEVARSNATASTVEQHFYRVDDDDKRG 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L +L D G++ A +FV++ C L+ LE ALH KSQ +RL AL F
Sbjct: 239 TLRQIL---RDRGLKQAFVFVNSKLGCARLARSLERDGLNTAALHGDKSQDERLKALDAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G +L+ TDVA+RGLDI V V N+DIP DYVHR+GRT RAG GLAVSFV+
Sbjct: 296 KQGNVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSG 355
Query: 411 NDVDLIHEIEAVVGKQLE 428
D L+ E+E ++GK+LE
Sbjct: 356 RDARLVGELEKLLGKKLE 373
>gi|149235261|ref|XP_001523509.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152060561|sp|A5E6W6.1|RRP3_LODEL RecName: Full=ATP-dependent rRNA helicase RRP3
gi|146452918|gb|EDK47174.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 504
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 229/370 (61%), Gaps = 13/370 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L +++ + L +PTP+Q IP L+GKD++G+A+TGSGKTAAFA+PIL
Sbjct: 99 SFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQ 158
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A PY ALV+ PTRELA+Q+ E F ALGS + LR ++GGM ++ QA+ LM +
Sbjct: 159 TLYTAAQPY--YALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRK 216
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN-R 237
PHV+IATPGR+ LE + ++LV+DE DR++D+ + + + + + +P + R
Sbjct: 217 PHVIIATPGRLIDHLEHTKGFS--LKKLQYLVMDEVDRMIDLDYAKAIDQILKQIPSHQR 274
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T L++ATM+ +++ + S N E + K + LKQ N KD L+ +++
Sbjct: 275 ITYLYTATMSREIEK-FKRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLIQIVN 333
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ M + IIF T L+L L + V LH QS+RL A+++FK+G I
Sbjct: 334 -LDSM--KRVIIFTRTVVHTRRCCLMLLNLGFKCVELHGQMPQSRRLGAINKFKAG-TPI 389
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP VDLV+NYDIP P Y+HRVGRTARAG+ G A+S VTQ D++
Sbjct: 390 LVATDVAARGLDIPAVDLVINYDIPD-PTLYIHRVGRTARAGKAGKAISLVTQYDLESYL 448
Query: 418 EIEAVVGKQL 427
IE +G +L
Sbjct: 449 RIENTLGTKL 458
>gi|357474189|ref|XP_003607379.1| ATP-dependent RNA helicase DRS1 [Medicago truncatula]
gi|355508434|gb|AES89576.1| ATP-dependent RNA helicase DRS1 [Medicago truncatula]
Length = 479
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/206 (62%), Positives = 166/206 (80%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
D ++ D ++F+ LGL+EW V+ C +LGM+ P PVQ HCIPK+LEG+ V+G+ +TGSG
Sbjct: 272 DCDNAGNDKHMSFSDLGLSEWMVRGCDKLGMQSPRPVQRHCIPKVLEGRHVIGIDKTGSG 331
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFALPIL RL E P+GV ALV+TPTRELA QLA QF LGS L L VVVGG+D
Sbjct: 332 KTAAFALPILQRLGETPFGVFALVLTPTRELAVQLAHQFWILGSSLRLILTVVVGGLDKR 391
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QAK L+ RP++VIATP R+K+LL+++P+I P+F+ TKFLVLDEAD++LDVGF+EEL+V+
Sbjct: 392 IQAKQLVARPNLVIATPERLKILLQDNPEIAPIFAATKFLVLDEADQLLDVGFQEELKVI 451
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLE 255
FQCLP+NRQ L FSATMTS+LQ + +
Sbjct: 452 FQCLPENRQNLFFSATMTSNLQKMCD 477
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/223 (56%), Positives = 160/223 (71%), Gaps = 24/223 (10%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL+EW VQ CK+LGM+ P VQ HCIPK+LEG+DV+G+ +TGSGKTAAFALPIL
Sbjct: 1 MSFSDLGLSEWTVQNCKKLGMQTPRRVQQHCIPKVLEGRDVVGIDETGSGKTAAFALPIL 60
Query: 120 HRLAEDP--YGV--LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
RLAE P +GV ALV+TPTRELA QLA+QF ALGS L L
Sbjct: 61 QRLAEHPKPFGVYVFALVLTPTRELAIQLADQFLALGSSL-------------------L 101
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
PH+VIATP R++VLL ++P+I +F+ TKFLVLDEAD++LDVGF +EL V+ QCLP+
Sbjct: 102 PTSPHLVIATPERLRVLLLDNPEIATIFATTKFLVLDEADQLLDVGFRDELNVIVQCLPE 161
Query: 236 NRQTLLFSATMTSDLQTLL-ELSANKAYFYEAYEGFKTVETLK 277
NRQ L FS TMTS+L+ ++ + + Y +EA EG K +E LK
Sbjct: 162 NRQNLFFSETMTSNLKKMMYDRYRDNMYAFEACEGLKLLEHLK 204
>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 487
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/405 (41%), Positives = 234/405 (57%), Gaps = 23/405 (5%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L+GKDV+G AQTG+GKTAAFALP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L R+ + P + V ALV+ PTRELA Q+AEQ K +L VV GGMD+
Sbjct: 62 LQRMMKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E T T++Q + + + K
Sbjct: 179 SYLPKQRITLLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L +L K D+ + A +FV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 ALHQIL-KARDL--KQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAVSFV
Sbjct: 296 KSGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAA 355
Query: 411 NDVDLIHEIEAVVGKQLE----EFE-----CKEQEVLSDITRVYK 446
+D L+ +IE ++ ++E EFE EQ ++D R+Y+
Sbjct: 356 SDQRLVTDIEKLIKTKIEIEPMEFEEDTPRISEQGRINDGRRMYR 400
>gi|320038401|gb|EFW20337.1| ATP-dependent RNA helicase DBP8 [Coccidioides posadasii str.
Silveira]
Length = 508
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 179/468 (38%), Positives = 255/468 (54%), Gaps = 58/468 (12%)
Query: 35 SKNAKTTQLEKFTNPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGM 80
S+ K + L PD N+ D +F+ LGLA W V + + +
Sbjct: 67 SRIKKKSDLSAAKGPDRNADQADPVTAKDAFALGLQSMDSSFSSLGLAPWLVGSLSAMAI 126
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
RRPT +Q CIP+IL+G+D +G ++TGSGKT AFA PILHR +EDP+G+ A+V+TPT E+
Sbjct: 127 RRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTSEM 186
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLE-EDPDI 199
QA +L RPHVVIATPGR+ ++ D
Sbjct: 187 R----------------------------PQAIALSTRPHVVIATPGRLADHIKTSGQDT 218
Query: 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-----NRQTLLFSATMTSDLQTLL 254
+R + +VLDEADR+L G L V CL +RQTLLF+AT+T +++ L
Sbjct: 219 IYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSAVPSSTSRQTLLFTATVTPEVRALK 278
Query: 255 ELSANKAYFY-----EAYEGFKTV-ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+ +K + + E T+ TLKQ Y+ +P ++ +L HVL + + AI
Sbjct: 279 SMPRSKDRLHIFVTEISTENNTTIPPTLKQCYLQVPMTHREAFL-HVLLSTDANSSKPAI 337
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IF + ++ LL LL L +LHS QS+R S L RF++ A +L+ATDVA+RGL
Sbjct: 338 IFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGL 397
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP+V LV+N+D+PR P DY+HRVGRTARAGR G A++ V Q DV L+ IE VG+Q+
Sbjct: 398 DIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEERVGRQMV 457
Query: 429 EFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE---RKKQKLK 473
+E + + I R + V K G E+ ++ R+ +KLK
Sbjct: 458 AWEEEGVSIEGRIVRGGLLKDVGGAKREALGEIEEGRDVLGRRVRKLK 505
>gi|119605167|gb|EAW84761.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, isoform CRA_d [Homo
sapiens]
Length = 376
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 143/311 (45%), Positives = 202/311 (64%), Gaps = 6/311 (1%)
Query: 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---F 222
MD++ QA L +PHVVIATPGR+ L + +FLV+DEADR+L+ G F
Sbjct: 1 MDMVAQALELSRKPHVVIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDF 58
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF 282
+L + +P RQTLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+
Sbjct: 59 TVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLL 118
Query: 283 IPKNVKDVYLMHVLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341
+P+ VKD YL+H++ + +D S IIF +TC++C +L ++L + VALHS Q
Sbjct: 119 VPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQK 178
Query: 342 QRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG 401
+R +AL +FKS IL+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR
Sbjct: 179 ERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQ 238
Query: 402 GLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFE 461
G A++ VTQ D+ L+H IE + K+LEEF +E EVL +T+V RR +KL F+
Sbjct: 239 GQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFD 298
Query: 462 EKAKERKKQKL 472
EK + K+++L
Sbjct: 299 EKKEINKRKQL 309
>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
NSW150]
Length = 421
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 229/398 (57%), Gaps = 18/398 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL E +Q+ ELG + P+ +Q IPKIL GKDVL AQTG+GKTA+F LPIL
Sbjct: 1 MSFKSLGLIEPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPIL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L+ P L++TPTRELA Q+ E G L R VV GG+ + Q L
Sbjct: 61 QMLSTKPRANSNRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L + F + LVLDEADR+LD+GF +++ + LPK
Sbjct: 121 RSGVEILVATPGRLLDLYNQRA---IQFDQVDTLVLDEADRMLDMGFIHDMKRIINYLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
NRQ L+FSAT T ++++ ++ N+ + TV +KQ + KN K L H+
Sbjct: 178 NRQNLMFSATFTDEIRSFVKTILNQPIEIDVTPRNTTVVKIKQTVHPVDKNRKAALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + + A++F T + L L E A A+H KSQSQR AL+ FKSG+
Sbjct: 238 IHRNK---WNQALVFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGEL 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATD+A+RG+DI + V+N+D+P+ DYVHR+GRT RAG GLA+S V+ ++V+
Sbjct: 295 HILVATDIAARGIDIDQLPCVVNFDLPQVAEDYVHRIGRTGRAGAIGLAISLVSADEVNQ 354
Query: 416 IHEIEAVVGKQLEEFECKE--------QEVLSDITRVY 445
+ IE ++ +L+ E ++ Q +S TR Y
Sbjct: 355 LQSIEKLIQHKLDRIEIEDFEPQHNVPQTTISSTTRKY 392
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 10/368 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGLA +Q ++ G P+P+Q IP ILEGKD+L AQTG+GKTA F+LP+L
Sbjct: 1 MSFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLL 60
Query: 120 HRLAED-PYG---VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
HRL + P V AL++TPTRELA Q+ E K+ L L+ VV GG+ + Q K+L
Sbjct: 61 HRLLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKAL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V+IATPGR+ L +++ FS+ + LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 RSGVDVLIATPGRLLDLYQQNA---VKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPT 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTLLFSAT +S++ TL + N TVET++Q + I K+ K L
Sbjct: 178 KRQTLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKTAAL--- 234
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+S ++ G + ++F T + ++ L + A+H KSQ R AL FKSG+
Sbjct: 235 ISLIKQNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEI 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DI + +V+N D+P P DYVHR+GRT RAG G A SFV+ +++D
Sbjct: 295 DVLVATDIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQ 354
Query: 416 IHEIEAVV 423
+ +IE ++
Sbjct: 355 LKDIETLI 362
>gi|123468442|ref|XP_001317439.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121900173|gb|EAY05216.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 416
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 216/359 (60%), Gaps = 5/359 (1%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
TD + TF+ LGL + V CK LG + P P+Q IP +E KD+ G A+TGSGKT A+
Sbjct: 2 TDDSYTFSDLGLCQPMVDACKSLGWKYPMPIQIKTIPPAIEKKDICGTAETGSGKTGAYM 61
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
LPI H + E+P+ ALV PTRELA Q+ + +G + +R ++GG+D +Q K+L
Sbjct: 62 LPIFHHMWENPHSFFALVFAPTRELATQIDHVTRDIGKDIKVRVCTIIGGVDEDSQVKAL 121
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCLP 234
+PHVV+ATPGR+ L+ +P + P ++ + LV DEAD +L + F+ +++++ L
Sbjct: 122 KAQPHVVVATPGRLARLIRNNPKVIP-LNKVECLVFDEADNMLREPSFQTDIQLILSKLN 180
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
QT LFSATM +++ L + + + TL + + K+ L+
Sbjct: 181 STHQTYLFSATMPEEIEQLAKQTMSDPVRLSLTSVNTVARTLTEHLVISETGKKEATLVA 240
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ D + IIFV +C++ ++S LL L+ + H Q +R++A+ RFK+G
Sbjct: 241 LMNQYPD---KQTIIFVGSCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGD 297
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+AT+V SRGLD+P VDLV+NY++P +Y+HRVGR RA R G+AV+ +T N+V
Sbjct: 298 YRVLVATNVGSRGLDVPHVDLVINYELPEEHEEYIHRVGRAGRAERSGVAVTIITANEV 356
>gi|406973607|gb|EKD96982.1| hypothetical protein ACD_23C01154G0002, partial [uncultured
bacterium]
Length = 475
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 236/404 (58%), Gaps = 23/404 (5%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+ FA L LA+ + E+G TP+Q IP +L+G+DV+G AQTG+GKTAAFALP++
Sbjct: 1 MAFAQLQLADPLARAVAEMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLM 60
Query: 120 HRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
R+ + P + V ALV+ PTRELA Q+AEQ + G +LR VV GGMD+ Q
Sbjct: 61 QRMLKHENASTSPARHPVRALVLLPTRELAVQVAEQVELYGKYTNLRSAVVFGGMDMKPQ 120
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 121 TIELKKGVEVLVATPGR---LLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILS 177
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LPK R TLLFSAT + +++ L E T++Q + + K
Sbjct: 178 YLPKQRTTLLFSATFSPEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVEGEDKRHA 237
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +L + GI+ A +FV++ C L+ LE + ALH KSQ +RL AL FK
Sbjct: 238 LHQILRQR---GIKQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALESFK 294
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG +L+ TDVA+RGLDI V V N+DIP + DYVHR+GRT RAG GLAV+FV+++
Sbjct: 295 SGGVDLLVCTDVAARGLDIKDVPAVFNFDIPFHAEDYVHRIGRTGRAGAEGLAVTFVSKS 354
Query: 412 DVDLIHEIEAVVGKQLE----EFE-----CKEQEVLSDITRVYK 446
D L+ +IE ++ ++E EFE ++Q ++D R+Y+
Sbjct: 355 DQRLVTDIEKLLKTKIELEGIEFEENLPDIRKQGHINDGRRLYR 398
>gi|365097957|ref|ZP_09331724.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363413202|gb|EHL20410.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 505
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 234/404 (57%), Gaps = 19/404 (4%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + K
Sbjct: 179 SFLPKQRTTLLFSATFSPEIKRLASSYLQNPVTIEVARPNETASTVEQRFYSAGDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL + GI+ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIHQVL---KSRGIKQAFIFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KSGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSG 355
Query: 411 NDVDLIHEIEAVVGKQLE----EFECKEQEVLSDITRVYKARRV 450
+D L+ +IE ++ K++E E+E ++Q + + R+ RR
Sbjct: 356 SDARLVADIEKLIKKKIELEAIEYE-EDQPSIRNQGRINDGRRA 398
>gi|170579441|ref|XP_001894832.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158598430|gb|EDP36322.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 378
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 227/356 (63%), Gaps = 8/356 (2%)
Query: 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDP-DIPP 201
Q+ +QF ALG + L+ ++VGG D + Q+ L RPH+V+ATPGR+ LE D +
Sbjct: 2 QIGDQFAALGVSIGLKIGIIVGGKDRVAQSSDLARRPHIVVATPGRLADHLESDSENTGK 61
Query: 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKA 261
+F + +FLVLDEADR+LD + EL+ + LPK RQTLLFSAT+TS L L ++S K
Sbjct: 62 LFEKLRFLVLDEADRLLDGQYSIELKTILTFLPKQRQTLLFSATITSALSQLHQVSVKKP 121
Query: 262 YFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI-IFVSTCRSCHLL 320
YF+E TV+ L+Q+Y+ P VKD YL++V+ + S I IF TCR C L
Sbjct: 122 YFFEDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPESLILIFSHTCRECQAL 181
Query: 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD 380
+++ L + +LHS SQ +R S+L +F+SG+ IL+ TDVASRGLDIP VDLV+N++
Sbjct: 182 AIMFHGLGFKVGSLHSQISQQERTSSLTKFRSGRIKILICTDVASRGLDIPHVDLVVNHN 241
Query: 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSD 440
+P+ P+ Y+HRVGR+ARAGR G A+ FVTQ D+ L+ EIE ++ K+L++ +++V
Sbjct: 242 VPQNPKTYIHRVGRSARAGRFGCALLFVTQYDIYLLQEIEKIIKKKLDKLVVNDKKVTQY 301
Query: 441 ITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLA------EKGSLKKRSEKRKK 490
+T+V +R A +KL F E+ K++++ + E+ +R +KRK+
Sbjct: 302 VTQVLVTKREAEIKLDQQNFGERKIINKRKEMLIAGLDPDEVERTLKMQREQKRKQ 357
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 170/413 (41%), Positives = 235/413 (56%), Gaps = 25/413 (6%)
Query: 52 NSTTTDS-TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
N T D+ T+ FA L LA+ + E+G TP+Q IP +L GKDV+G AQTG+GK
Sbjct: 13 NELTADTPTMAFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGK 72
Query: 111 TAAFALPILHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
TAAFALP+L RL + P + V ALV+ PTRELA Q+A+Q K +LR VV
Sbjct: 73 TAAFALPLLQRLMKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVV 132
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
GGMD+ Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF
Sbjct: 133 FGGMDMKPQTLELKAGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGF 189
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF 282
+L+ + LPK R TLLFSAT + +++ L E T T++Q +
Sbjct: 190 LPDLQRILSYLPKTRTTLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYR 249
Query: 283 IPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQ 342
+ + K L+ ++ + I+ A +FV++ C L+ LE A ALH KSQ +
Sbjct: 250 VNDDDKRHALLQIVRSKD---IKQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDE 306
Query: 343 RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402
RL AL FK G+ +L+ TDVA+RGLDI V V N DIP DYVHR+GRT RAG G
Sbjct: 307 RLKALEAFKKGEVDLLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASG 366
Query: 403 LAVSFV-TQNDVDLIHEIEAVVGKQLE----EF-----ECKEQEVLSDITRVY 445
LAVSFV ND L+ +IE ++ ++E EF + + Q ++D R+Y
Sbjct: 367 LAVSFVGGGNDARLVADIEKLIKTKIELEAVEFDEDRPDIRSQGRINDGRRMY 419
>gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
Length = 451
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 215/372 (57%), Gaps = 13/372 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL + ELG+ RPTP+QT IP +EG+D+LGLAQTG+GKTAAF LP+L
Sbjct: 3 FNSLGLLPCITENLAELGLTRPTPIQTKAIPHAMEGRDILGLAQTGTGKTAAFGLPLLTA 62
Query: 122 LAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+A + P V LV+ PTRELA Q+ E +A G H+R +VVGG + Q L
Sbjct: 63 IAREQGKPEPKTVRGLVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNRLA 122
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
V++ATPGR+ LL+ S+T+FLVLDEAD++LD+GF LR + LP+
Sbjct: 123 RGTDVLVATPGRLIDLLDRRA---VTLSQTRFLVLDEADQMLDLGFIHALRRIATLLPQT 179
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM-HV 295
RQT+LFSATM + + E K + ++Q FI + K L+ H+
Sbjct: 180 RQTMLFSATMPKLMAEIAGSYLTDPVRVETAPPGKPADKIEQSVHFIAQGEKTALLIEHL 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ D AI+F T L L AVA+H KSQ QR A+ F+ G+A
Sbjct: 240 DAHRAD----PAIVFARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEA 295
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVA+RG+DIP + V NYD+P +YVHR+GRTARAGR G A+++ ++
Sbjct: 296 MVLVATDVAARGIDIPGIRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCAPAEMGE 355
Query: 416 IHEIEAVVGKQL 427
+ +I+ ++GK+L
Sbjct: 356 LRDIQKLLGKEL 367
>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 489
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/386 (41%), Positives = 225/386 (58%), Gaps = 16/386 (4%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SYLPKTRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ HVL G++ A +FV++ C LS LE +A ALH KSQ +RL AL F
Sbjct: 239 AIHHVL---RTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KRGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSS 355
Query: 411 NDVDLIHEIEAVVGKQ--LEEFECKE 434
+D L+ +IE + K+ LE E +E
Sbjct: 356 SDARLVADIEKLTKKKIDLEALEVEE 381
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 224/379 (59%), Gaps = 10/379 (2%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
T D +++F LGL+ ++ E G P+P+Q IP +L+GKDV+ AQTG+GKTA
Sbjct: 6 ATRDQSMSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAG 65
Query: 114 FALPILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
F LP+L L++ V ALV+TPTRELA Q+AE + G L LR V+ GG+ +
Sbjct: 66 FTLPMLELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPIN 125
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q L + V++ATPGR+ L + FS+ + LVLDEADR+LD+GF ++R +
Sbjct: 126 PQIAKLRHGVDVLVATPGRLMDLYNQKA---VKFSQLEILVLDEADRMLDMGFIRDIRKI 182
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LPK RQ L+FSAT + +++ L + N T+KQ + K+ K
Sbjct: 183 LAILPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKS 242
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L+ ++ K D + ++F T + L+ LE+ +A A+H KSQ+ R AL
Sbjct: 243 ALLIQLI-KQNDW--QQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALAD 299
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+GQA +L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+
Sbjct: 300 FKNGQARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVS 359
Query: 410 QNDVDLIHEIEAVVGKQLE 428
++ L+++IE ++ + L+
Sbjct: 360 NEEIKLLNDIERLINRVLD 378
>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 491
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/386 (41%), Positives = 225/386 (58%), Gaps = 16/386 (4%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SYLPKTRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ HVL G++ A +FV++ C LS LE +A ALH KSQ +RL AL F
Sbjct: 239 AIHHVL---RTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KRGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSS 355
Query: 411 NDVDLIHEIEAVVGKQ--LEEFECKE 434
+D L+ +IE + K+ LE E +E
Sbjct: 356 SDARLVADIEKLTKKKIDLEALEVEE 381
>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
Length = 448
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 214/372 (57%), Gaps = 11/372 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGLA ++ LG+ +PTP+Q IP I+ G+D+LGLAQTG+GKTAAF LP+L
Sbjct: 3 TFENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLPMLT 62
Query: 121 RLAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
R+ P V ALV+ PTRELA Q+ + A G +R + VVGG L QA+ L
Sbjct: 63 RILAYGKRPAPKTVRALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQAEKL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V+IATPGR+ L+E V S TK+LVLDEAD++LD+GF LR + + +P
Sbjct: 123 SKGCDVLIATPGRLIDLIERRAL---VLSETKYLVLDEADQMLDIGFIHALRRIAKLIPA 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTLLFSATM ++ L + E K E + Q F + K L
Sbjct: 180 ERQTLLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGVHFTTQGEKAALLAEY 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+S+ A++F T L+ LLE+ A+H KSQ QR AL F++ +
Sbjct: 240 ISRHPG---ELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEV 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVA+RGLDIP V V NYD+P P +YVHR+GRTARAGR G AV+F ++
Sbjct: 297 QVLVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSD 356
Query: 416 IHEIEAVVGKQL 427
+ IEA +G ++
Sbjct: 357 LRAIEAAMGAKI 368
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 226/396 (57%), Gaps = 14/396 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + ++G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SHLPKTRTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVSDDDKR- 237
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
Y + L K D IR A +F ++ C L+ LE A ALH KSQ +RL AL F
Sbjct: 238 YALRSLLKQRD--IRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V NYD+P DYVHR+GRT RAG G+AV+ VT
Sbjct: 296 KRGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTN 355
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYK 446
+D L+ EIE ++ K++ C ++ R ++
Sbjct: 356 HDARLVGEIEKLIKKKINVEACPMEDFRGSAPRGHR 391
>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 504
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 226/396 (57%), Gaps = 14/396 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + ++G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SHLPKTRTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVSDDDKR- 237
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
Y + L K D IR A +F ++ C L+ LE A ALH KSQ +RL AL F
Sbjct: 238 YALRSLLKQRD--IRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V NYD+P DYVHR+GRT RAG G+AV+ VT
Sbjct: 296 KRGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTN 355
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYK 446
+D L+ EIE ++ K++ C ++ R ++
Sbjct: 356 HDARLVGEIEKLIKKKINVEPCPMEDFRGSAPRGHR 391
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 224/379 (59%), Gaps = 10/379 (2%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
T D +++F LGL+ ++ E G P+P+Q IP +L+GKDV+ AQTG+GKTA
Sbjct: 6 ATRDQSMSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAG 65
Query: 114 FALPILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
F LP+L L++ V ALV+TPTRELA Q+AE + G L LR V+ GG+ +
Sbjct: 66 FTLPMLELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPIN 125
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q L + V++ATPGR+ L + FS+ + LVLDEADR+LD+GF ++R +
Sbjct: 126 PQIAKLRHGVDVLVATPGRLMDLYNQKA---VKFSQLEILVLDEADRMLDMGFIRDIRKI 182
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LPK RQ L+FSAT + +++ L + N T+KQ + K+ K
Sbjct: 183 LAILPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKS 242
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L+ ++ K D + ++F T + L+ LE+ +A A+H KSQ+ R AL
Sbjct: 243 ALLIQLI-KQNDW--QQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALAD 299
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+GQA +L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+
Sbjct: 300 FKNGQARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVS 359
Query: 410 QNDVDLIHEIEAVVGKQLE 428
++ L+++IE ++ + L+
Sbjct: 360 NEEIKLLNDIERLINRVLD 378
>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 484
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 222/378 (58%), Gaps = 14/378 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T ++ L LAE + E+G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TQPYSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ HVL+ + G++ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIRHVLN---ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG+ +L+ TDVA+RGLDI V V NYD+P DYVHR+GRT RAG GLAV+
Sbjct: 296 KSGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAAS 355
Query: 411 NDVDLIHEIEAVVGKQLE 428
+D L+ +IE ++ K++E
Sbjct: 356 SDTRLVADIEKLIKKKIE 373
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 224/379 (59%), Gaps = 10/379 (2%)
Query: 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113
T D +++F LGL+ ++ E G P+P+Q IP +L+GKDV+ AQTG+GKTA
Sbjct: 6 ATRDQSMSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAG 65
Query: 114 FALPILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
F LP+L L++ V ALV+TPTRELA Q+AE + G L LR V+ GG+ +
Sbjct: 66 FTLPMLELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPIN 125
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q L + V++ATPGR+ L + FS+ + LVLDEADR+LD+GF ++R +
Sbjct: 126 PQIAKLRHGVDVLVATPGRLMDLYNQKA---VKFSQLEILVLDEADRMLDMGFIRDIRKI 182
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LPK RQ L+FSAT + +++ L + N T+KQ + K+ K
Sbjct: 183 LAILPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKS 242
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L+ ++ K D + ++F T + L+ LE+ +A A+H KSQ+ R AL
Sbjct: 243 ALLIQLI-KQNDW--QQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALAD 299
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+GQA +L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+
Sbjct: 300 FKNGQARVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVS 359
Query: 410 QNDVDLIHEIEAVVGKQLE 428
++ L+++IE ++ + L+
Sbjct: 360 NEEIKLLNDIERLINRVLD 378
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 217/375 (57%), Gaps = 13/375 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L+ ++ C+ LG ++PTP+Q CIP L G+D+ G A TGSGKTAAF+LP+L
Sbjct: 225 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 284
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A L++TPTRELA Q+ + L +RC ++VGG+ Q +L +
Sbjct: 285 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 344
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P +V+ATPGRI L + L+LDEADR+L++GF E++ + + P+ R
Sbjct: 345 MPDIVVATPGRIIDHLRNSLSVG--LEDLAILILDEADRLLELGFSAEIQELIRMCPRRR 402
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK----NVKDVYLM 293
QT+LFSATMT ++ L+ LS NK EA K TL ++ + I + N + V L
Sbjct: 403 QTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLA 462
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
L +D IIF T S H L ++ +A LH +Q+QRL AL FK
Sbjct: 463 LCLKTFKD----KVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQ 518
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ L+ATDVA+RG+DI V V+N+ PR R Y+HRVGRTARAGR G AV+FVT +D
Sbjct: 519 EVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDR 578
Query: 414 DLIHEIEAVVGKQLE 428
L+ I G QL+
Sbjct: 579 SLLKAIAKKAGSQLK 593
>gi|407940452|ref|YP_006856093.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407898246|gb|AFU47455.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
Length = 490
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 229/400 (57%), Gaps = 15/400 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQNPITIEVARPNETASTVEQRFYSANDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ HVL + GI+ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIHHVL---KTRGIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KKGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSG 355
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRV 450
+D L+ +IE ++ K++ + E E E R+ RR
Sbjct: 356 SDARLVADIEKLIKKKI-DLEAIEYEEDRPRGRINDGRRA 394
>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 484
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 222/378 (58%), Gaps = 14/378 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T ++ L LAE + E+G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TQPYSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ HVL+ + G++ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIRHVLN---ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG+ +L+ TDVA+RGLDI V V NYD+P DYVHR+GRT RAG GLAV+
Sbjct: 296 KSGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAAS 355
Query: 411 NDVDLIHEIEAVVGKQLE 428
+D L+ +IE ++ K++E
Sbjct: 356 SDTRLVADIEKLIKKKIE 373
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 217/375 (57%), Gaps = 13/375 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L+ ++ C+ LG ++PTP+Q CIP L G+D+ G A TGSGKTAAF+LP+L
Sbjct: 195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 254
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A L++TPTRELA Q+ + L +RC ++VGG+ Q +L +
Sbjct: 255 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 314
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P +V+ATPGRI L + L+LDEADR+L++GF E++ + + P+ R
Sbjct: 315 MPDIVVATPGRIIDHLRNSLSVG--LEDLAILILDEADRLLELGFSAEIQELIRMCPRRR 372
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK----NVKDVYLM 293
QT+LFSATMT ++ L+ LS NK EA K TL ++ + I + N + V L
Sbjct: 373 QTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLA 432
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
L +D IIF T S H L ++ +A LH +Q+QRL AL FK
Sbjct: 433 LCLKTFKD----KVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQ 488
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ L+ATDVA+RG+DI V V+N+ PR R Y+HRVGRTARAGR G AV+FVT +D
Sbjct: 489 EVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDR 548
Query: 414 DLIHEIEAVVGKQLE 428
L+ I G QL+
Sbjct: 549 SLLKAIAKKAGSQLK 563
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 220/375 (58%), Gaps = 13/375 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L+ V+ C+ LG ++PTP+Q CIP L G+D+ G A TGSGKTAAF+LP+L
Sbjct: 163 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 222
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A L++TPTRELA Q+ + L +RC ++VGG+ Q +L +
Sbjct: 223 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 282
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P +V+ATPGRI L + ++LDEADR+L++GF E++ + + PK R
Sbjct: 283 MPDIVVATPGRIIDHLRNSLSVG--LEDLAVVILDEADRLLELGFSAEIQELIRMCPKRR 340
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK----NVKDVYLM 293
QT+LFSATMT ++ L++LS NK EA K TL ++ + I + N + V L
Sbjct: 341 QTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLA 400
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
L + RS IIF T +S H L ++ +A LH +Q+QRL AL F+
Sbjct: 401 LCLKTFK----RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQ 456
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ L+ATDVA+RG+DI V V+N+ PR + Y+HRVGRTARAGR G AV+FVT +D
Sbjct: 457 EVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDR 516
Query: 414 DLIHEIEAVVGKQLE 428
L+ I G QL+
Sbjct: 517 SLLKAIAKKAGSQLK 531
>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
Length = 470
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/433 (37%), Positives = 240/433 (55%), Gaps = 22/433 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA+ ++ + G PTP+Q IP ++ G+D+LG+AQTG+GKTAAFALPILHR
Sbjct: 4 FTDLGLAKPLLKALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPILHR 63
Query: 122 LAEDPYGVL-----ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
LAED LV++PTRELA Q+AE FKA G L L V+ GG+ Q ++L
Sbjct: 64 LAEDRRPAPRRSARVLVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMRALA 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
V++ATPGR+ L+E V + VLDEAD++LD+GF +R + + LPK
Sbjct: 124 GGVDVLVATPGRLIDHLQEKS---VVLEGVETFVLDEADQMLDMGFIVPIRRIVKFLPKR 180
Query: 237 RQTLLFSATMTSDLQTLL-ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L FSATM ++++ L E+ TVE + Q+ +F+ + K L +
Sbjct: 181 RQNLFFSATMPAEIEKLTGEILNPNPLKVTVTPPSTTVERINQRVLFVEQQRKRALLAEL 240
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+D + I+F T R ++ LE++ EA ++H KSQ QR AL FK+G
Sbjct: 241 F---DDASFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDV 297
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI V V+ +++P P YVHR+GRTARAG G AV+F ++ +L
Sbjct: 298 RALVATDIAARGIDIDAVSHVVQFELPNVPEAYVHRIGRTARAGADGSAVAFCADDERNL 357
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKML 475
+ +IE V +++ F+ + L AT L D G + + ER Q +
Sbjct: 358 LKDIEKVTKQRIPNFDRRNDRHLG----------AATAALPDTGGKPERSERSAQPHRQG 407
Query: 476 AEKGSLKKRSEKR 488
+K + S+ +
Sbjct: 408 HQKKPNRNHSQGK 420
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 226/390 (57%), Gaps = 16/390 (4%)
Query: 46 FTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
F++ D S +S F L L+ V+ C+ LG ++PTP+Q CIP L G+D+ G A
Sbjct: 156 FSSSDRASFHANS---FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAI 212
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
TGSGKTAAF+LP+L RL P V A L++TPTRELA Q+ + L +RC ++
Sbjct: 213 TGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQIHSMVEKLAQFTDIRCCLI 272
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
VGG+ Q +L + P +V+ATPGRI L + ++LDEADR+L++GF
Sbjct: 273 VGGLSTKIQEVALRSMPDIVVATPGRIIDHLRNSLSVG--LEDLAVVILDEADRLLELGF 330
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF 282
E++ + + PK RQT+LFSATMT ++ L++LS NK EA K TL ++ +
Sbjct: 331 SAEIQELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVVR 390
Query: 283 IPK----NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFK 338
I + N + V L L + RS IIF T +S H L ++ +A LH
Sbjct: 391 IRRARESNQEAVLLALCLKTFK----RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNL 446
Query: 339 SQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARA 398
+Q+QRL AL FK + L+ATDVA+RG+DI V V+N+ PR + Y+HRVGRTARA
Sbjct: 447 TQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARA 506
Query: 399 GRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
GR G AV+FVT +D L+ I G QL+
Sbjct: 507 GREGYAVTFVTDDDRCLLKAIAKKAGSQLK 536
>gi|351730076|ref|ZP_08947767.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 498
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 229/400 (57%), Gaps = 15/400 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYESMTPIQEQAIPVVLTGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQRFYSANDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL + G++ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIHQVL---KTRGLKQAFIFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KSGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSG 355
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRV 450
+D L+ +IE ++ K++ E E E E R+ RR
Sbjct: 356 SDARLVADIEKLIKKKI-ELEAIEYEEDQPRGRINDGRRA 394
>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
Length = 397
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/371 (38%), Positives = 222/371 (59%), Gaps = 11/371 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L E + G ++PTP+Q CIP ++ G D+LG+AQTG+GKTAAF+LPI++
Sbjct: 4 FKEFSLLESIIDRVSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINN 63
Query: 122 LAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ + A L++TPTRELA Q+ + GL L+ +VV GG+ Q S+
Sbjct: 64 FGRNKIDINAKSTRSLILTPTRELASQIMQNIDDYADGLGLKTKVVYGGVGRQNQVDSIA 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ L++ D DI F + VLDEAD +LD+GF ++++ + LPKN
Sbjct: 124 LGLDILVATPGRLLDLIKTD-DIN--FKALEVFVLDEADTMLDMGFFKDVQRIISKLPKN 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTLLFSATM ++++ L + + T+E + Q + K+ K L+++L
Sbjct: 181 RQTLLFSATMPAEIEILADAILTDPTKIQITAETVTIERINQSVYHLEKSNKVPLLLNIL 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K + +IF T ++ LEE A +LHS K+Q+ R AL FK +
Sbjct: 241 EKSH---YKKVLIFCKTKPGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLS 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RG+D+ + LV+NY++P PR+Y+HR+GRTARAG+ G+A+SF +ND+ L+
Sbjct: 298 VLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGIAISFAVENDITLL 357
Query: 417 HEIEAVVGKQL 427
+ IE +GK +
Sbjct: 358 NSIEKSIGKAI 368
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 220/375 (58%), Gaps = 13/375 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L+ V+ C+ LG ++PTP+Q CIP L G+D+ G A TGSGKTAAF+LP+L
Sbjct: 163 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 222
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A L++TPTRELA Q+ + L +RC ++VGG+ Q +L +
Sbjct: 223 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 282
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P +V+ATPGRI L + ++LDEADR+L++GF E++ + + PK R
Sbjct: 283 MPDIVVATPGRIIDHLRNSLSVG--LEDLAVVILDEADRLLELGFSAEIQELIRMCPKRR 340
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK----NVKDVYLM 293
QT+LFSATMT ++ L++LS NK EA K TL ++ + I + N + V L
Sbjct: 341 QTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLA 400
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
L + RS IIF T +S H L ++ +A LH +Q+QRL AL F+
Sbjct: 401 LCLKTFK----RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQ 456
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ L+ATDVA+RG+DI V V+N+ PR + Y+HRVGRTARAGR G AV+FVT +D
Sbjct: 457 EVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDR 516
Query: 414 DLIHEIEAVVGKQLE 428
L+ I G QL+
Sbjct: 517 SLLKAIAKKAGSQLK 531
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/398 (40%), Positives = 227/398 (57%), Gaps = 19/398 (4%)
Query: 44 EKFTNPDPNSTTTDS------TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG 97
E+ + PDP+ + S +F L ++ ++ C+ LG ++PTP+Q CIP L G
Sbjct: 153 EQSSTPDPSKFFSSSEGASFKANSFLELNISRPLLRACEALGYQKPTPIQAACIPLALTG 212
Query: 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSG 154
+D+ G A TGSGKTAAF+LP+L RL P V A L++TPTRELA Q+ + L
Sbjct: 213 RDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQF 272
Query: 155 LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEA 214
+RC ++VGG+ Q +L + P +V+ATPGRI L + L+LDEA
Sbjct: 273 TDIRCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLRNSLSVG--LEDLAILILDEA 330
Query: 215 DRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE 274
DR+L++GF E+ + + PK RQT+LFSATMT ++ L++LS NK EA K
Sbjct: 331 DRLLELGFSVEINELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPA 390
Query: 275 TLKQQYIFIPK----NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE 330
TL ++ + I + N + V L L ++ IIF T S H L ++ +
Sbjct: 391 TLTEEVVRIRRSREANQEAVLLALCLKTFKE----RVIIFSGTKHSAHRLKIMFGLSGMK 446
Query: 331 AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVH 390
A LH +Q+QRL AL FK + IL+ATD+A+RG+DI V V+N+ PR + Y+H
Sbjct: 447 AAELHGNLTQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYLH 506
Query: 391 RVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
RVGRTARAGR G AV+FVT +D L+ I G QL+
Sbjct: 507 RVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 544
>gi|225681661|gb|EEH19945.1| ATP-dependent rRNA helicase rrp3 [Paracoccidioides brasiliensis
Pb03]
Length = 469
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 188/464 (40%), Positives = 269/464 (57%), Gaps = 39/464 (8%)
Query: 4 QILLDRNFPLFAKPKSKTRSKPEPQPEPEPE-SKNAKTTQLEKFTNPDPNSTTTDSTVTF 62
Q L R A+P S T+S PE E S++ T++ + +P T +T +F
Sbjct: 2 QALKKRKLAHAARPDS-TKSNPETSGSKSVEQSQDQLTSEAGEQGAKNPQEET--ATKSF 58
Query: 63 AGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR- 121
LG+ + + C+ LG + PTP+QT IP L+G+D++GLA+TGSGKTAAFALPIL
Sbjct: 59 KDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQGE 118
Query: 122 ----LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L +G P + Q A C V+VGGMD++ QA +L
Sbjct: 119 LLSFLLRTHWG------NPANDPLSQSA-------------CAVIVGGMDMVPQAIALGK 159
Query: 178 RPHVVIATPGRIKVLLEEDPDI-PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
TPGR+ LE PP S T LV+DEADR+LD+ F L + + LP+
Sbjct: 160 ETSHHRRTPGRLLDHLENTKGFSPPATSNT--LVMDEADRLLDLDFGPILDKILKVLPRE 217
Query: 237 RQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
R+T L SATM+S +++L S +N + ++TV TL Q ++FIP KD+YL+++
Sbjct: 218 RRTYLLSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKDIYLVYL 277
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L++ +SAIIF T L++LL L A+ LH SQS RL AL +F+S
Sbjct: 278 LNEFAG---QSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSR 334
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A SFVTQ D+++
Sbjct: 335 DILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEV 394
Query: 416 IHEIEAVVGKQLEEFECKEQE--VLSDITRVYKARRVATMKLMD 457
IE + K+LEE++ +++E VLSD RV +A+R A ++ +
Sbjct: 395 WLRIENALDKKLEEYKVEKEEVMVLSD--RVGEAQRHAITEMKN 436
>gi|16125088|ref|NP_419652.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 476
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 220/382 (57%), Gaps = 11/382 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGLA+ ++ E G + PTP+Q IP +L+GKD+LG+AQTG+GKTAAFALPIL R
Sbjct: 4 FSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63
Query: 122 LAEDP-----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
LAED G LV++PTRELA Q+AE FKA + L + GG+ Q K+L
Sbjct: 64 LAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
V++ATPGR L++ + + S T+ VLDEAD++LD+GF +R + L KN
Sbjct: 124 GGIDVLVATPGR---LMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKN 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQ L FSATM S++ L N TVE + Q+ +FI K L +
Sbjct: 181 RQNLFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELF 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ D I+F T R ++ L EA ++H K+Q QR AL FK+G+
Sbjct: 241 A---DTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMR 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+ATD+A+RG+D+ V V+NY++P P YVHR+GRTAR G+ G+A+SF ++ +L+
Sbjct: 298 ALVATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLL 357
Query: 417 HEIEAVVGKQLEEFECKEQEVL 438
+I+ + + F+ + + L
Sbjct: 358 KDIQKATRQTIPSFDRRNDKQL 379
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 226/390 (57%), Gaps = 16/390 (4%)
Query: 46 FTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQ 105
F++ D S +S F L L+ V+ C+ LG ++PTP+Q CIP L G+D+ G A
Sbjct: 172 FSSSDRASFHANS---FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAI 228
Query: 106 TGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVV 162
TGSGKTAAF+LP+L RL P V A L++TPTRELA Q+ + L +RC ++
Sbjct: 229 TGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQIHSMVEKLAQFTDIRCCLI 288
Query: 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF 222
VGG+ Q +L + P +V+ATPGRI L + ++LDEADR+L++GF
Sbjct: 289 VGGLSTKIQEVALRSMPDIVVATPGRIIDHLRNSLSVG--LEDLAVVILDEADRLLELGF 346
Query: 223 EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF 282
E++ + + PK RQT+LFSATMT ++ L++LS NK EA K TL ++ +
Sbjct: 347 SAEIQELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVVR 406
Query: 283 IPK----NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFK 338
I + N + V L L + RS IIF T +S H L ++ +A LH
Sbjct: 407 IRRARESNQEAVLLALCLKTFK----RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNL 462
Query: 339 SQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARA 398
+Q+QRL AL FK + L+ATDVA+RG+DI V V+N+ PR + Y+HRVGRTARA
Sbjct: 463 TQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARA 522
Query: 399 GRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
GR G AV+FVT +D L+ I G QL+
Sbjct: 523 GREGYAVTFVTDDDRCLLKAIAKKAGSQLK 552
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 222/372 (59%), Gaps = 9/372 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L ++ G PTP+Q IP +L+ +D++G AQTG+GKTAAFALPIL
Sbjct: 1 MTFKELNLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFALPIL 60
Query: 120 HRLA-EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
LA E G+ AL++TPTRELA Q+ E F+ G+ L LRC V+ GG+ + Q + L
Sbjct: 61 QNLASERRKGIKALILTPTRELAIQIQENFEHYGTHLPLRCTVIFGGVSQVPQVERLRRG 120
Query: 179 PHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L+ + DI S+ + VLDEADR+LD+GF +++ V LPK R
Sbjct: 121 VDILIATPGRLCDLINQGYVDI----SQIEVFVLDEADRMLDMGFIRDVKKVLNALPKKR 176
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSATM +++ L + + T ++ Q I K K L +L
Sbjct: 177 QTLLFSATMPKEIEVLANTILHDPVTVKVDPVTSTASSIHQHVYLIDKGNKRRLLAKLLR 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
E + SA++F T + + L E A+A+H KSQ+ R +AL RFKSG I
Sbjct: 237 GRE---VGSALVFTRTKHAADKVVKELAETGMVAMAIHGNKSQNARQTALKRFKSGDIKI 293
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DIP + V NY++P P Y+HR+GRT RAG GG+A+SF +++ +
Sbjct: 294 LVATDIAARGIDIPELSHVFNYELPNEPETYIHRIGRTGRAGLGGVAISFCDYDEIPYLK 353
Query: 418 EIEAVVGKQLEE 429
+IE ++G+ + E
Sbjct: 354 DIEKLMGQTIPE 365
>gi|401839240|gb|EJT42545.1| RRP3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 404
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 211/334 (63%), Gaps = 6/334 (1%)
Query: 47 TNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQT 106
T + N+ +S +F L L +Q CK L +PTP+Q+ IP L+G D++GLAQT
Sbjct: 70 TAENDNANEGESFESFNELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQT 129
Query: 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 166
GSGKTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM
Sbjct: 130 GSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGM 189
Query: 167 DLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226
+++ QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L
Sbjct: 190 NMMDQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVL 247
Query: 227 RVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285
+ + +P + R T LFSATMTS + L S ++TV+TL Q + +P
Sbjct: 248 DRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQALMVVPG 307
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
+K+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+
Sbjct: 308 GLKNTYLIYLLN--ESIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMG 364
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNY 379
AL FK+G+ +IL+ATDVA+RGLDIP+VD+V+NY
Sbjct: 365 ALDLFKAGKRSILVATDVAARGLDIPSVDIVVNY 398
>gi|119616690|gb|EAW96284.1| hCG27698, isoform CRA_d [Homo sapiens]
Length = 392
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 205/308 (66%), Gaps = 6/308 (1%)
Query: 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220
V+VGG+D ++Q+ +L +PH++IATPGR+ LE K+LV+DEADR+L++
Sbjct: 62 VIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNM 119
Query: 221 GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQY 280
FE E+ + + +P++R+T LFSATMT +Q L + ++TVE L+Q Y
Sbjct: 120 DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYY 179
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
IFIP KD YL+++L+++ S +IF STC + +LLL L A+ LH SQ
Sbjct: 180 IFIPSKFKDTYLVYILNELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQ 236
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
S+RL +L++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR
Sbjct: 237 SKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGR 296
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGF 460
G A++FVTQ DV+L IE ++GK+L F ++ EV+ RV +A+R A M+L + G
Sbjct: 297 SGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG- 355
Query: 461 EEKAKERK 468
E+K + R+
Sbjct: 356 EKKKRSRE 363
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 220/375 (58%), Gaps = 13/375 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L+ V+ C+ LG ++PTP+Q CIP L G+D+ G A TGSGKTAAF+LP+L
Sbjct: 186 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 245
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A L++TPTRELA Q+ + L +RC ++VGG+ Q +L +
Sbjct: 246 RLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 305
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P +V+ATPGRI L + ++LDEADR+L++GF E++ + + PK R
Sbjct: 306 MPDIVVATPGRIIDHLRNSLSVG--LEDLAVVILDEADRLLELGFSAEIQELIRMCPKRR 363
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK----NVKDVYLM 293
QT+LFSATMT ++ L++LS NK EA K TL ++ + I + N + V L
Sbjct: 364 QTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLA 423
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
L + RS IIF T +S H L ++ +A LH +Q+QRL AL FK
Sbjct: 424 LCLKTFK----RSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQAQRLEALELFKKQ 479
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ L+ATDVA+RG+DI V V+N+ PR + Y+HRVGRTARAGR G AV+FVT +D
Sbjct: 480 EVDFLIATDVAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDR 539
Query: 414 DLIHEIEAVVGKQLE 428
L+ I G QL+
Sbjct: 540 SLLKAIAKKAGSQLK 554
>gi|337278667|ref|YP_004618138.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729743|gb|AEG92119.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 486
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 231/399 (57%), Gaps = 15/399 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 9 TDSFSNLSLAEPLARAVAEMGYETMTPIQAQAIPVVLTGRDVMGAAQTGTGKTAAFSLPL 68
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q K +LR VV GGMD+
Sbjct: 69 LQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKP 128
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V + +++VLDEADR+LD+GF +L+ +
Sbjct: 129 QTLELKRGVEVLVATPGR---LLDHIEAKNAVLGQVEYVVLDEADRMLDIGFLPDLQRIL 185
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q + + + K
Sbjct: 186 SYLPKQRTTLLFSATFSPEIKRLANSYLKDPVTIEVARPNETASTVEQHFYSVTDDDKRR 245
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L ++ + GI A +FV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 246 ALKQIVRQR---GITQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALAAF 302
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G+ +L+ATDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+FV+
Sbjct: 303 KAGEVDLLVATDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTFVSG 362
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR 449
+D L+ ++E ++ K++ + E E E R+ RR
Sbjct: 363 SDGRLVADLEKLLKKKV-DLEAIEYEDDRPRGRINDGRR 400
>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 506
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/392 (40%), Positives = 228/392 (58%), Gaps = 14/392 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+ FA L LA + ++G TP+Q IP +L+G+DV+G AQTG+GKTAAFALP+L
Sbjct: 15 MAFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLL 74
Query: 120 HRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
R+ + P + V ALV+ PTRELA Q+A+ K +LR VV GGMD+ Q
Sbjct: 75 QRMLKHENSSTSPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQ 134
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 135 TLELKKGVEVLVATPGR---LLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILS 191
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LPK R TLLFSAT +S+++ L E T++Q + + + K
Sbjct: 192 YLPKQRITLLFSATFSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHA 251
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +L + G++ A +FV++ C L+ LE + ALH KSQ +RL AL FK
Sbjct: 252 LHQIL---KSRGMKQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFK 308
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG+ +L+ TDVA+RGLDI V V N+DIP DYVHR+GRT RAG GLAVSFV ++
Sbjct: 309 SGEVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKS 368
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITR 443
D+ L+ +IE ++ ++E + E + DI +
Sbjct: 369 DIRLVADIEKLLNTKIELEAVEYDEDVPDIRK 400
>gi|401827655|ref|XP_003888120.1| ATP-dependent rRNA helicase [Encephalitozoon hellem ATCC 50504]
gi|392999320|gb|AFM99139.1| ATP-dependent rRNA helicase [Encephalitozoon hellem ATCC 50504]
Length = 399
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 215/369 (58%), Gaps = 6/369 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + ++ C+E G+ PT +Q IP I+ G D++ ++QTGSGKT AF LPI+
Sbjct: 3 FDELRVDKSLIEVCEENGIAEPTEIQEQVIPAIVGGSDIIAVSQTGSGKTLAFVLPIVSC 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L LVI PTREL+ Q+AE F ++ LR ++VGG QA L PHV
Sbjct: 63 LLSKNRSFYCLVIAPTRELSSQIAECF-SMFENTGLRVCLLVGGTSFNVQANQLSKHPHV 121
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGRI + + R + LVLDEADR + F E+L + + L + RQTLL
Sbjct: 122 IVGTPGRIAEHILKTKSFK--IERVRKLVLDEADRFFEQDFVEDLETIIRSLREKRQTLL 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
F+ATM+ ++ L E ++TV TLK+ Y+FI K+ L+ +L +
Sbjct: 180 FTATMSDEISKLSNSILRSPKTIRVVEKYETVPTLKEYYLFIAMKWKNSALVELLEM--N 237
Query: 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361
G+ S I+FVS C + ++SL L L + ALH Q +R + FK + +IL+ T
Sbjct: 238 PGV-SVIVFVSMCVTARVMSLALSRLGFHSEALHGELIQEKREETMRMFKENKFSILVCT 296
Query: 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421
DV SRGLDI VDLV+N+D+P+ +DYVHRVGRTARAGR G A++ VTQ D++ + +E
Sbjct: 297 DVGSRGLDISHVDLVINFDVPKSGKDYVHRVGRTARAGRSGTAITLVTQYDIEQLQRVEF 356
Query: 422 VVGKQLEEF 430
+ K LEEF
Sbjct: 357 ALKKSLEEF 365
>gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
CCS2]
gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
CCS2]
Length = 435
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 218/381 (57%), Gaps = 11/381 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA V KE G+ PTP+QT IP + G+DV+GLAQTGSGKTAAF LP++H
Sbjct: 3 FDMLGLAPRLVNVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMIHA 62
Query: 122 LAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L + +P L++ PTRELA Q+A+ A G HL+ +VVGG ++ Q K L
Sbjct: 63 LMKAGVKPNPKTSRGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKRLA 122
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ LL+ T +LVLDEAD++LD+GF LR + L K+
Sbjct: 123 GGVDLLVATPGRLIDLLDRRA---VRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKD 179
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT++FSATM + L A + + V+ + Q F+ + K L+ +L
Sbjct: 180 RQTMMFSATMPKLMGELAGTYLTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELL 239
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K D AI+F T C L +LE+ A ++H KSQ QR AL FKSG+
Sbjct: 240 DKHRD---ELAIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTR 296
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RGLDIP V V NYD+P +YVHR+GRTARAG G AV+ V +++ +
Sbjct: 297 VLVATDVAARGLDIPDVRFVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEMIEL 356
Query: 417 HEIEAVVGKQLEEFECKEQEV 437
+IE + + + +E E+
Sbjct: 357 KDIEKAMKETIPVASGREWEI 377
>gi|399217940|emb|CCF74827.1| unnamed protein product [Babesia microti strain RI]
Length = 495
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 229/402 (56%), Gaps = 22/402 (5%)
Query: 69 EWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG 128
EW ++ K++ + + +Q +P I G +V+ A TG+GKT F PIL L+++PYG
Sbjct: 81 EWIIEVAKKMQIHNLSEIQRRALPLIFRGFNVIASAPTGTGKTICFCWPILAELSKNPYG 140
Query: 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGR 188
V ALV+ P RELA Q++EQF GS + + V+GG DL++++ +L RP++V+ATPGR
Sbjct: 141 VFALVLMPNRELALQVSEQFALYGSPIGVSVMTVIGGTDLISESANLSFRPNIVVATPGR 200
Query: 189 IKVLLEE-DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL---PKNRQTLLFSA 244
+ L +I +FS T++LVLDEAD +L FEE+L + L K R+TLLFSA
Sbjct: 201 LAYHLRTPGRNIAEIFSETQYLVLDEADNLLAASFEEDLITIISSLLSMEKGRKTLLFSA 260
Query: 245 TMTSDLQTL---LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL----- 296
T+ ++ + LE F E + YIF P+ + V+L ++L
Sbjct: 261 TINESIENMHKILEFGKVPVKFINVR---ALDEKISHYYIFYPRCIHLVHLNYILRLPQF 317
Query: 297 -SKMEDMG------IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
+K+ + +R IIFV+T + C + L+ L LHS +Q R+ L +
Sbjct: 318 LNKLSETCNNDKRQLRQGIIFVATKKRCIFIEDSLKILGFTVAGLHSLLNQRDRIRQLDK 377
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
F+ G +L+AT+VASRGLDIP V V+N DI +DY HRVGRT RA G+A+SFV
Sbjct: 378 FRRGTVELLIATNVASRGLDIPKVTFVMNLDICIDVKDYKHRVGRTGRAYEKGIALSFVD 437
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
+ DV + E +G +L +FE E+E L + +V KA +VA
Sbjct: 438 ERDVSKVENFEKALGFKLNKFEFPEKESLKSLNKVTKASQVA 479
>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 475
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 224/383 (58%), Gaps = 13/383 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGLA+ ++ E G + PTP+Q IP +L+GKD+LG+AQTG+GKTAAFALPIL R
Sbjct: 4 FADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63
Query: 122 LAEDP-----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
LAED G LV++PTRELA Q+AE FKA + L + GG+ Q K+L
Sbjct: 64 LAEDRKPAPRRGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
V++ATPGR L++ + + S T+ VLDEAD++LD+GF +R + L KN
Sbjct: 124 GGIDVLVATPGR---LMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTKN 180
Query: 237 RQTLLFSATMTSDLQTLL-ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L FSATM S++ L EL + A + TVE + Q+ +FI K L +
Sbjct: 181 RQNLFFSATMPSEIGKLAGELLKDPVQVSVAPQA-TTVERIDQRVLFIEAQRKRPLLAEL 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ D I+F T R ++ L EA ++H K+Q QR AL FK+G+
Sbjct: 240 FA---DSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEM 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+D+ V V+NY++P P YVHR+GRTAR G+ G+A+SF ++ +L
Sbjct: 297 RALVATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNL 356
Query: 416 IHEIEAVVGKQLEEFECKEQEVL 438
+ +I+ + + F+ + + L
Sbjct: 357 LKDIQKATRQTIPAFDRRNDKQL 379
>gi|336066223|ref|YP_004561081.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296169|dbj|BAK32040.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 475
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 219/369 (59%), Gaps = 14/369 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ E +Q E G +PTP+Q IP +L+ D++GLAQTG+GKTAAFA+P L
Sbjct: 3 FKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQN 62
Query: 122 LAEDPYG------VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L E + + ALV+TPTRELA Q+ E F+ G + LR VV GG+ Q K+L
Sbjct: 63 LKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
N +IATPGR++ L+ + D+ S+ + +LDEADR+LD+GF +++ + + LP
Sbjct: 123 RNGVDTLIATPGRLEDLMSQGYIDL----SQIEIFILDEADRMLDMGFINDVKRIIKKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K +QTLLFSATM S++ ++ E+ N TVET++Q ++ + K L+
Sbjct: 179 KKKQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVYYVDQRNKTQLLID 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
VL E+ S ++F T R ++ L + AVA+H KSQ R AL FK G
Sbjct: 239 VL---ENKSFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKEGT 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+++ATD+A+RG+DI + V+NY++P P YVHR+GRT RAG G A+SF ++
Sbjct: 296 INVMVATDIAARGIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAISFCNFEEIP 355
Query: 415 LIHEIEAVV 423
L+ +IE V+
Sbjct: 356 LLKDIEHVI 364
>gi|333985213|ref|YP_004514423.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333809254|gb|AEG01924.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 379
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 222/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL+E ++ + G PTP+Q IP +L G+D+L AQTG+GKTA F LPILHR
Sbjct: 3 FSHLGLSETLLKAITDSGYTTPTPIQIKAIPAVLTGRDLLAAAQTGTGKTAGFTLPILHR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLH--LRCEVVVGGMDLLTQAKSL 175
LA+ YG V AL++TPTRELA Q+ E G+ H L+ EVV GG+ + Q L
Sbjct: 63 LAQTSYGRNRPVRALILTPTRELAAQVGESVLKYGAHQHPRLKSEVVFGGVKINPQMMRL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
++ ATPGR+ L+ ++ + + LVLDEADR+LD+GF ++R + LPK
Sbjct: 123 RGGVDILTATPGRLLDLVSQNA---VKLDKVEMLVLDEADRMLDMGFIRDIRKILALLPK 179
Query: 236 NRQTLLFSATMTSDLQTLL-ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQ LLFSAT ++D++ L EL N A E ET+ Q + K K L H
Sbjct: 180 QRQNLLFSATFSADIRKLTSELLVNPVKIEVAVEN-SAAETIDQLVYTVNKTAKTALLTH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L K +D + ++F ST + L+ L + +A A+H KSQ R SAL FK+G
Sbjct: 239 -LVKTKDW--QQVLVFTSTKHGANRLTEKLNTANIKAAAIHGNKSQGARTSALAGFKAGD 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RG+DI + V+N+++PR DYVHR+GRT RAG+ G AVS V+Q++
Sbjct: 296 IRVLVATDVAARGIDIAQLPHVVNFELPRSSSDYVHRIGRTGRAGKIGQAVSLVSQDEYQ 355
Query: 415 LIHEIEAVVGKQL 427
+ +E ++G Q+
Sbjct: 356 ALRLVEKLIGTQI 368
>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 475
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 219/369 (59%), Gaps = 14/369 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LG+ E +Q E G +PTP+Q IP +L+ D++GLAQTG+GKTAAFA+P L
Sbjct: 3 FKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQN 62
Query: 122 LAEDPYG------VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L E + + ALV+TPTRELA Q+ E F+ G + LR VV GG+ Q K+L
Sbjct: 63 LKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
N +IATPGR++ L+ + D+ S+ + +LDEADR+LD+GF +++ + + LP
Sbjct: 123 RNGVDTLIATPGRLEDLMSQGYIDL----SQIEIFILDEADRMLDMGFINDVKRIIKKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K +QTLLFSATM S++ ++ E+ N TVET++Q ++ + K L+
Sbjct: 179 KKKQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVYYVDQRNKTQLLID 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
VL E+ S ++F T R ++ L + AVA+H KSQ R AL FK G
Sbjct: 239 VL---ENKSFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGT 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+++ATD+A+RG+DI + V+NY++P P YVHR+GRT RAG G A+SF ++
Sbjct: 296 INVMVATDIAARGIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAISFCNFEEIP 355
Query: 415 LIHEIEAVV 423
L+ +IE V+
Sbjct: 356 LLKDIEHVI 364
>gi|378776210|ref|YP_005184640.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364507017|gb|AEW50541.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 420
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 158/394 (40%), Positives = 227/394 (57%), Gaps = 10/394 (2%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T++F L L E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPI
Sbjct: 6 TMSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPI 65
Query: 119 LHRLAE----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
L + ++ P V L++TPTRELA Q+ E G L LR V+ GG+ Q K
Sbjct: 66 LQKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQ 125
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L + +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 126 LDSGLEILVATPGRLLDLYQQRA---VKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLP 182
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQ LLFSAT T +++ L NKA + V+T+KQ + +N K L H
Sbjct: 183 LKRQNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSH 242
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L K + G ++F T + L L E +VA+H KSQ+QR+ AL FKSG+
Sbjct: 243 LLHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGK 299
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++
Sbjct: 300 VQTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIK 359
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
L+ IE ++ ++LE + K+ E L + + A+
Sbjct: 360 LLLSIEKLINQKLERIKIKDFEFLHNFSDFVSAK 393
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 159/395 (40%), Positives = 225/395 (56%), Gaps = 19/395 (4%)
Query: 47 TNPDPNSTTTDS------TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDV 100
+ PDP+ + S +F L ++ ++ C+ LG ++PTP+Q CIP L G+D+
Sbjct: 146 STPDPSKFFSSSEGASFKANSFLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDI 205
Query: 101 LGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHL 157
G A TGSGKTAAF+LP+L RL P V A L++TPTRELA Q+ + L +
Sbjct: 206 CGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDI 265
Query: 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217
RC ++VGG+ Q +L + P +V+ATPGRI L + L+LDEADR+
Sbjct: 266 RCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLRNSLSVG--LEDLAILILDEADRL 323
Query: 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLK 277
L++GF E+ + + PK RQT+LFSATMT ++ L++LS NK EA K TL
Sbjct: 324 LELGFSVEINELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLT 383
Query: 278 QQYIFIPK----NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA 333
++ + I + N + V L L ++ IIF T S H L ++ +A
Sbjct: 384 EEVVRIRRSREANQEAVLLALCLKTFKE----RVIIFSGTKHSAHRLKIMFGLSGMKAAE 439
Query: 334 LHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVG 393
LH +Q+QRL AL FK + IL+ATD+A+RG+DI V V+N+ PR + Y+HRVG
Sbjct: 440 LHGNLTQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYLHRVG 499
Query: 394 RTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
RTARAGR G AV+FVT +D L+ I G QL+
Sbjct: 500 RTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 534
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 216/375 (57%), Gaps = 13/375 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L+ ++ C+ LG ++PTP+Q CIP L G+D+ G A TGSGKTAAF+LP+L
Sbjct: 195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 254
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A L++TPTRELA + + L +RC ++VGG+ Q +L +
Sbjct: 255 RLLFRPKRVPAIRVLILTPTRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 314
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P +V+ATPGRI L + L+LDEADR+L++GF E++ + + P+ R
Sbjct: 315 MPDIVVATPGRIIDHLRNSLSVG--LEDLAILILDEADRLLELGFSAEIQELIRMCPRRR 372
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK----NVKDVYLM 293
QT+LFSATMT ++ L+ LS NK EA K TL ++ + I + N + V L
Sbjct: 373 QTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLA 432
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
L +D IIF T S H L ++ +A LH +Q+QRL AL FK
Sbjct: 433 LCLKTFKD----KVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQ 488
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ L+ATDVA+RG+DI V V+N+ PR R Y+HRVGRTARAGR G AV+FVT +D
Sbjct: 489 EVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDR 548
Query: 414 DLIHEIEAVVGKQLE 428
L+ I G QL+
Sbjct: 549 SLLKAIAKKAGSQLK 563
>gi|397662817|ref|YP_006504355.1| RNA helicase [Legionella pneumophila subsp. pneumophila]
gi|395126228|emb|CCD04409.1| RNA helicase [Legionella pneumophila subsp. pneumophila]
Length = 414
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 226/393 (57%), Gaps = 10/393 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L + E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPIL
Sbjct: 1 MSFKQLAMIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60
Query: 120 HRLAE----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+ ++ P V L++TPTRELA Q+ E G L LR V+ GG+ Q K L
Sbjct: 61 QKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 DSGLEILVATPGRLLDLYQQRA---VKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT T +++TL NKA + V+T+KQ + +N K L H+
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++F T + L L E +VA+H KSQ+QR AL FKSG+
Sbjct: 238 LHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++ L
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ ++LE + K+ E L + + A+
Sbjct: 355 LQSIEKLINQKLERIKIKDFEFLHNFSDFVSAK 387
>gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
Length = 414
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 158/393 (40%), Positives = 226/393 (57%), Gaps = 10/393 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L L E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPIL
Sbjct: 1 MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60
Query: 120 HRLAE----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+ + P V L++TPTRELA Q+ E G L LR V+ GG+ Q K L
Sbjct: 61 QKAGQQTPASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 DSGLEILVATPGRLLDLYQQRA---VKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT T +++TL NKA + V+T+KQ + +N K L H+
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++F T + L L E +VA+H KSQ+QR AL FKSG+
Sbjct: 238 LHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++ L
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ ++LE + K+ E L + + + A+
Sbjct: 355 LLSIEKLINQKLERIKIKDFEFLHNFSDLVSAK 387
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 219/370 (59%), Gaps = 10/370 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+E V+ G PTP+Q IP +LEGKDVL AQTG+GKTA F LP+L
Sbjct: 3 FKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQL 62
Query: 122 LAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L++ P V AL++TPTRELA Q+ + K G + LR V+ GG++ +Q +L N
Sbjct: 63 LSQTPPLRNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRN 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V++ATPGR L++ + ++ + LVLDEADR+LD+GF +++ + + +PK R
Sbjct: 123 GVDVLVATPGR---LIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSAT + ++++L E+ TVE ++QQ + K K L+ ++S
Sbjct: 180 QTLLFSATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTDLLIKLIS 239
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ ++F T + L+ LE A A+H KSQ R AL FKSG +
Sbjct: 240 ---EGNWEQVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+ASRGLDIP + V+N+++P DYVHR+GRT RAG GLAVS V+ ++ +
Sbjct: 297 LVATDIASRGLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLK 356
Query: 418 EIEAVVGKQL 427
+IE ++G ++
Sbjct: 357 DIEKLIGDKI 366
>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 589
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 224/389 (57%), Gaps = 11/389 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S +TF +GL + + G +PTP+Q IP +++GKD+LG+AQTG+GKTAAFALP
Sbjct: 2 SEITFESMGLNKALLTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALP 61
Query: 118 ILHRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
ILHRLAE+ P AL+++PTRELA Q+ + FK G+ L R V+ GG+ Q
Sbjct: 62 ILHRLAENRVAPRPRTTRALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQE 121
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
++L V++A PGR LL+ S + VLDEAD++LD+GF + +R +
Sbjct: 122 RALQQGLDVLVAAPGR---LLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSR 178
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
+P RQ L FSATM S++ L + TVE +KQ I++ + K L
Sbjct: 179 IPAKRQNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALL 238
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+ S D ++F T ++ LE EA A+H KSQ QR AL FK+
Sbjct: 239 TELFS---DPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKN 295
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G+ +L+ATD+A+RG+D+ V V+N+++P P YVHR+GRTARAG+ G A+SFV ++
Sbjct: 296 GKLRVLVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDE 355
Query: 413 VDLIHEIEAVVGKQLEEFECKEQEVLSDI 441
+ L+ +IE V +++ + + + L+ +
Sbjct: 356 MKLLKDIEKVTRQKIPAIDRRNDKALAQL 384
>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 448
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 226/380 (59%), Gaps = 21/380 (5%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGLAE V+ E G PTP+Q IP +L G D+L AQTG+GKTA F LPIL
Sbjct: 1 MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 120 HRLAED--PYG-------VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
HRLA P+ + ALV+TPTRELA Q+ E + G L+L V+ GG+ +
Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINP 120
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q K L + +++ATPGR LL+ + + LVLDEADR+LD+GF +++R V
Sbjct: 121 QIKMLKHGVDILVATPGR---LLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVL 177
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPKNRQ LLFSAT +++++ L + N E TVE ++Q+ + ++ K
Sbjct: 178 AALPKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHP 237
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV---ALHSFKSQSQRLSAL 347
L H++ ++F R+ H + L+E+L+++ + A+H KSQS R AL
Sbjct: 238 MLAHLIKSNN---WSQVLVF---TRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRAL 291
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
FK G +L+ATD+A+RG+DI + V+NYD+P P DYVHR+GRT RAG G AVS
Sbjct: 292 SEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSL 351
Query: 408 VTQNDVDLIHEIEAVVGKQL 427
V ++++++ +IE ++ ++L
Sbjct: 352 VCVDELEMLKDIEKLIKRKL 371
>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
Length = 538
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 226/378 (59%), Gaps = 11/378 (2%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
+ F+ GL + + ++ G PTPVQ IP ILEG+D++G AQTG+GKTAAFALP+
Sbjct: 61 NLKFSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPV 120
Query: 119 LHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
LH+L + P V ALV+TPTRELA Q+ + FK G LHLR + GG Q +L
Sbjct: 121 LHKLTLLKRPR-VRALVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALR 179
Query: 177 NRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ + +D D+ V + LVLDEADR+LD+GF ++ + + P
Sbjct: 180 RGADILVATPGRLLDFMGQDLVDLSSV----EILVLDEADRMLDMGFLPDVSRIVESTPS 235
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTL+FSATM +++ L + + + +T++Q+ IF + K + +
Sbjct: 236 KRQTLMFSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASL 295
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+ D + SAI+F T LS L+ E+VA+H K+Q QR AL+RFKSG+
Sbjct: 296 LT---DEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKV 352
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+++ATDVA+RGLDIP + V NYD+P Y+HR+GRT RAG G+A++ + ++D
Sbjct: 353 RVMVATDVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDA 412
Query: 416 IHEIEAVVGKQLEEFECK 433
+ E+E ++ K + E + +
Sbjct: 413 LREVEELLEKPIPELQTQ 430
>gi|115400041|ref|XP_001215609.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
gi|114191275|gb|EAU32975.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
Length = 360
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 218/341 (63%), Gaps = 8/341 (2%)
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L L + P +L++ PTRELA Q+A +ALG+ + +RC +++GGMD+++QA +L
Sbjct: 1 MLQALMDKPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGK 60
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+PHV++ATPGR+ LE K+LVLDEADR+LD+ F L + + LPK R
Sbjct: 61 KPHVIVATPGRLLDHLENTKGFS--LRTLKYLVLDEADRLLDLDFGPILDKLLRLLPK-R 117
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T LFSATM+S +++L S + +T L Q Y+FIP KD YL+++L+
Sbjct: 118 KTYLFSATMSSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLN 177
Query: 298 -KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ MGI IF T LS++L L A+ +H SQS RL++L++F++
Sbjct: 178 ERAGQMGI----IFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRN 233
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RGLDIP VD VLNYD+P+ + Y+HRVGRTARAG+ G+A SFVTQ +V+L
Sbjct: 234 LLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELW 293
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE +GK++EE++ ++ EV+ RV A+RVA + + D
Sbjct: 294 LRIEDALGKKVEEYKPEKDEVMIFAERVNDAQRVAALTMRD 334
>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 496
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 225/386 (58%), Gaps = 19/386 (4%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L R+ + P + V ALV+ PTRELA Q+A+Q K +LR VV GG+D+
Sbjct: 62 LQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q + + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L ++ + GI A +FV++ C L+ LE ALH KSQ +RL AL F
Sbjct: 239 ALKQIVKQR---GITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT- 409
K+G+ +L+ TDVA+RGLDI V V N+DIP DYVHR+GRT RAG GLAVSF +
Sbjct: 296 KAGEVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASG 355
Query: 410 QNDVDLIHEIEAVVGKQLE----EFE 431
ND L+ +IE ++ K++E EFE
Sbjct: 356 GNDARLVADIEKLIKKKIELEPVEFE 381
>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 486
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 225/386 (58%), Gaps = 19/386 (4%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L R+ + P + V ALV+ PTRELA Q+A+Q K +LR VV GG+D+
Sbjct: 62 LQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q + + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVTDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L ++ + GI A +FV++ C L+ LE ALH KSQ +RL AL F
Sbjct: 239 ALKQIVKQR---GITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT- 409
K+G+ +L+ TDVA+RGLDI V V N+DIP DYVHR+GRT RAG GLAVSF +
Sbjct: 296 KAGEVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASG 355
Query: 410 QNDVDLIHEIEAVVGKQLE----EFE 431
ND L+ +IE ++ K++E EFE
Sbjct: 356 GNDARLVADIEKLIKKKIELEPVEFE 381
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 221/373 (59%), Gaps = 10/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ ++ E G P+P+Q IP +L+GKDV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V ALV+TPTRELA Q+AE + G L LR V+ GG+ + Q L
Sbjct: 61 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V++ATPGR+ L + FS+ + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKA---VKFSQLEILVLDEADRMLDMGFIRDIRKILAILPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++ L + N T+KQ + K+ K L+ +
Sbjct: 178 QRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K D + ++F T + L+ LE+ +A A+H KSQ+ R AL FK+GQA
Sbjct: 238 I-KQNDW--QQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+ ++ L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKL 354
Query: 416 IHEIEAVVGKQLE 428
+++IE ++ + L+
Sbjct: 355 LNDIERLINRVLD 367
>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
Length = 422
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 222/377 (58%), Gaps = 14/377 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ +E G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L ++ G+ AL++TPTRELA Q+ E F+A G L+ V+ GG+ Q L
Sbjct: 61 QKLYKTDNRKGIKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDLKR 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTK---FLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR++ L+ + F K F VLDEADR+LD+GF ++R + + LP
Sbjct: 121 GTQILIATPGRLQDLVNQG------FINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLP 174
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTL FSATM S+++TL + E TV+T+ Q F+ K K L+H
Sbjct: 175 TQRQTLFFSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVYFVEKKEKKDLLIH 234
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L ++ I S ++F T L+ +L + A A+H KSQ+ R AL FKS
Sbjct: 235 LL---KNTAIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHT 291
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G A+SF ++
Sbjct: 292 IRVLIATDIAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTALSFCESEELP 351
Query: 415 LIHEIEAVVGKQLEEFE 431
+ +I+ ++GK + E
Sbjct: 352 YLKDIQKLIGKTIPVIE 368
>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 491
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 218/378 (57%), Gaps = 10/378 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ ++ + G + P+P+Q IP +L GKDV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ P V ALV+TPTRELA Q+AE G L LR VV GG+ + Q L
Sbjct: 61 ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L ++D FS+ + LVLDEADR+LD+GF +++ + LP
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAV---SFSQLETLVLDEADRMLDMGFIHDIKKILAILPP 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++TL + N T T++Q + KN K L+ +
Sbjct: 178 KRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + + + ++F T + L+ LE A A+H KSQ R AL FKSG
Sbjct: 238 IQQGD---WQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+ + L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKL 354
Query: 416 IHEIEAVVGKQLEEFECK 433
+ +IE ++GK L E +
Sbjct: 355 LADIERLIGKLLPRAEVE 372
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 221/373 (59%), Gaps = 10/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ ++ E G P+P+Q IP +L+GKDV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V ALV+TPTRELA Q+AE + G L LR V+ GG+ + Q L
Sbjct: 61 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V++ATPGR+ L + FS+ + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKA---VKFSQLEILVLDEADRMLDMGFIRDIRKILAILPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++ L + N T+KQ + K+ K L+ +
Sbjct: 178 QRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K D + ++F T + L+ LE+ +A A+H KSQ+ R AL FK+GQA
Sbjct: 238 I-KQNDW--QQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+ ++ L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKL 354
Query: 416 IHEIEAVVGKQLE 428
+++IE ++ + L+
Sbjct: 355 LNDIERLINRVLD 367
>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 425
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 218/370 (58%), Gaps = 10/370 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL+ + K G P+P+Q IP +LEGKDV+ AQTG+GKTA F LPIL
Sbjct: 1 MSFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 120 HRLAED----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V ALV+TPTRELA Q+ E A L LR EVV GG+ + Q L
Sbjct: 61 ELLSKGEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF +++ + + LPK
Sbjct: 121 RRGVDVLVATPGRLLDLFSQNA---ISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTLLFSAT + D++ L + A TVE ++Q I + K+ K L +
Sbjct: 178 ERQTLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPVDKSKKSAALKFL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + + ++F T + L+ L ++ EA A+H KSQ R AL FKSG+
Sbjct: 238 IQSRD---LSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEI 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG G A+S V++++ D
Sbjct: 295 RVLVATDIAARGIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQ 354
Query: 416 IHEIEAVVGK 425
+ +IE ++ K
Sbjct: 355 LSDIENLIRK 364
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 221/373 (59%), Gaps = 10/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ ++ E G P+P+Q IP +L+GKDV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V ALV+TPTRELA Q+AE + G L LR V+ GG+ + Q L
Sbjct: 61 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V++ATPGR+ L + FS+ + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKA---VKFSQLEILVLDEADRMLDMGFIRDIRKILAILPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++ L + N T+KQ + K+ K L+ +
Sbjct: 178 QRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K D + ++F T + L+ LE+ +A A+H KSQ+ R AL FK+GQA
Sbjct: 238 I-KQNDW--QQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+ ++ L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKL 354
Query: 416 IHEIEAVVGKQLE 428
+++IE ++ + L+
Sbjct: 355 LNDIERLINRVLD 367
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 221/373 (59%), Gaps = 10/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ ++ E G P+P+Q IP +L+GKDV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V ALV+TPTRELA Q+AE + G L LR V+ GG+ + Q L
Sbjct: 61 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V++ATPGR+ L + FS+ + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKA---VKFSQLEILVLDEADRMLDMGFIRDIRKILAILPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++ L + N T+KQ + K+ K L+ +
Sbjct: 178 QRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K D + ++F T + L+ LE+ +A A+H KSQ+ R AL FK+GQA
Sbjct: 238 I-KQNDW--QQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQA 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+ ++ L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKL 354
Query: 416 IHEIEAVVGKQLE 428
+++IE ++ + L+
Sbjct: 355 LNDIERLINRVLD 367
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 215/363 (59%), Gaps = 10/363 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL++ + T +L + PTP+QT IP +LEG+DV+GLAQTG+GKTAAF LPILHR
Sbjct: 12 FSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHR 71
Query: 122 LA----EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
LA P L+++PTREL+ Q+A+ K LG L LR VVVGG+ + Q K+L +
Sbjct: 72 LAPGKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLAS 131
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V+IATPGR+ L+E+ + + +VLDEAD++LD+GF ++ + P R
Sbjct: 132 GVDVLIATPGRLMDLIEQRAV---SLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATR 188
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSATM +++ L + KT + ++ + + K + + S
Sbjct: 189 QTLLFSATMPKEIRQLSDRHLTDPIEVSVIPAKKTADRVEHSVMHMQPGAK---MGALAS 245
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ D I+F T R + LE A A+H KSQ QR AL F++G +
Sbjct: 246 LIRDRKGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPV 305
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+D+P V LV+NY++P P YVHR+GRTARAG G AV+F ++ L+
Sbjct: 306 LIATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLR 365
Query: 418 EIE 420
+IE
Sbjct: 366 DIE 368
>gi|378754810|gb|EHY64839.1| hypothetical protein NERG_02242 [Nematocida sp. 1 ERTm2]
Length = 421
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 231/399 (57%), Gaps = 6/399 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA L V+ + G+ +PT +Q + ++ + +L ++ TG+GKT A+ LPI+H
Sbjct: 7 TFAEYTLDTSLVEALAKKGITQPTEIQKLMLTNLVNRQSILAISNTGTGKTLAYLLPIMH 66
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L +D A+VI PTREL+ Q+ +G+ + LR +++G DLL+Q KSL RPH
Sbjct: 67 TLLQDDKYFYAMVILPTRELSQQVHAVLADIGAEIGLRTSLLIGATDLLSQGKSLAARPH 126
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+VI TPGRI L I S K+LVLDE DR+LD F+ ++ + + + + T
Sbjct: 127 IVIGTPGRINHHLRNTKGIS--VSSFKYLVLDECDRLLDNDFDGDINNILEMISP-KYTF 183
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSAT+T + E N Y + E + QQYI++P+ K++YL ++
Sbjct: 184 LFSATLTKRVNAFKEKRMNNPLLYNVQKDEGIPENILQQYIYLPQKYKEMYLYSIV---H 240
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
++G R I+FV TC + + +L L + ++H K+Q R + F+ G+ +IL++
Sbjct: 241 NLGSRKCIVFVKTCITAERIERILRFLGESVCSIHGNKTQDIRTETIEMFRRGKHSILIS 300
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDV +RG+D+ + +++NYD+P ++Y+HR+GRT RAG G +++ VTQ DVD ++E
Sbjct: 301 TDVVARGMDMDGIKVIINYDMPDGHKEYIHRIGRTGRAGEVGSSITLVTQYDVDDFRKLE 360
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDG 459
+ K+++E+ + + S + V +A+R A M + ++G
Sbjct: 361 VKLNKKMDEYSVSSELIYSLVDSVDQAKREAAMDMKEEG 399
>gi|406986526|gb|EKE07099.1| hypothetical protein ACD_18C00189G0005 [uncultured bacterium]
Length = 451
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 216/369 (58%), Gaps = 7/369 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T F LG+ + ++ K G +PTP+Q IP LEGKDV+G+AQTG+GKT A+ +P+
Sbjct: 25 TGRFDDLGIKKNFLEILKNKGFEKPTPIQHQVIPGALEGKDVVGIAQTGTGKTLAYGIPL 84
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
+ LA G L++ PTRELA Q+A+ ++G L LR V++GG+ Q K L N
Sbjct: 85 IQNLATGNGG-QGLILVPTRELAQQVADALSSIGKSLGLRIAVIIGGVSSRPQIKDLRNN 143
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+VIATPGR+ L+E+ + L+LDEADR+LDVGF ++R +F+ P NRQ
Sbjct: 144 PHIVIATPGRLDDLMEQRQ---YRLDKVSMLILDEADRMLDVGFLPQIRRIFKLAPVNRQ 200
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T+LFSATM + +L E + E ++Q+ I K K L +L
Sbjct: 201 TMLFSATMPPSISSLASAFMKMPLRIEIAPQGTSAENVEQEVFIISKPDKMRLLYSLLKT 260
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+D + +IF T ++ + + A +HS ++Q QR ++L F G+ I+
Sbjct: 261 YKD---DTVLIFSRTKHGAKRIARDINTVGHSATEIHSNRTQGQRKASLEGFSRGRFRIM 317
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATD+A+RG+D+ + LV+N+D+P DYVHR+GRT RAGR G A+SFVT ++ I +
Sbjct: 318 VATDIAARGIDVKQISLVINFDLPDNSEDYVHRIGRTGRAGRSGKAISFVTPSEKMDIRK 377
Query: 419 IEAVVGKQL 427
IE ++ K L
Sbjct: 378 IEKLIRKTL 386
>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 449
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 226/380 (59%), Gaps = 21/380 (5%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGLA+ V+ E G PTP+Q IP +L G D+L AQTG+GKTA F LPIL
Sbjct: 1 MSFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 120 HRLAED--PYG-------VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
HRLA P+ + ALV+TPTRELA Q+ E + L+L V+ GG+ +
Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINP 120
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q K L + +++ATPGR LL+ S+ + LVLDEADR+LD+GF +++R V
Sbjct: 121 QIKLLKHGVDILVATPGR---LLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVL 177
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPKNRQ LLFSAT +++++ L + N E TVE ++Q+ + ++ K
Sbjct: 178 AVLPKNRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHP 237
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV---ALHSFKSQSQRLSAL 347
L H++ ++F R+ H + L+E+L+++ + A+H KSQS R AL
Sbjct: 238 MLAHLIKTNN---WSQVLVF---TRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRAL 291
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
FK G +L+ATD+A+RG+DI + V+NYD+P P DYVHR+GRT RAG G AVS
Sbjct: 292 SEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSL 351
Query: 408 VTQNDVDLIHEIEAVVGKQL 427
V +++D++ +IE ++ ++L
Sbjct: 352 VCVDELDMLKDIEKLIKRKL 371
>gi|395762134|ref|ZP_10442803.1| DEAD/DEAH box helicase [Janthinobacterium lividum PAMC 25724]
Length = 425
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 220/376 (58%), Gaps = 10/376 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF+ LGL + V+ ELG +PTPVQ IP +L G+D++ AQTG+GKTA FA+P+L
Sbjct: 14 MTFSSLGLIDPLVRKLDELGYAKPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 73
Query: 120 HRLAED----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
RL D P V LV+ PTRELA Q+ F++ G L LR V GG+ + Q L
Sbjct: 74 QRLTLDGVVAPQCVRVLVLVPTRELAEQVYASFRSYGGNLPLRSFVAYGGVPIEPQISKL 133
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR LL+ F + + LVLDEADR+LD+GFE EL ++ +PK
Sbjct: 134 RKGLDVLVATPGR---LLDLQTQGAVKFEQVQTLVLDEADRMLDLGFERELDILLMTMPK 190
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTLLFSAT + ++ + + E TV+ +KQ I K K +H+
Sbjct: 191 QRQTLLFSATFSDAIRAMAKTMLKDPISVEVSARNSTVKAVKQSVIVCDKKRKPELFLHL 250
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++FV T + LL L E A ++H K+Q RL AL RFK+ +
Sbjct: 251 LKK-KRWG--QVLVFVKTRKGVELLVNTLLEQGLRADSIHGDKTQPNRLRALARFKAAEV 307
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVA+RGLDI + +V+N+D+P DY+HR+GRT RAG G A+S V ++V+L
Sbjct: 308 QVLVATDVAARGLDIDQLPVVVNFDLPSVAEDYIHRIGRTGRAGASGEAISLVCADEVEL 367
Query: 416 IHEIEAVVGKQLEEFE 431
+ +EA+ + L+ E
Sbjct: 368 LSAVEALTRQTLKRNE 383
>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/392 (40%), Positives = 222/392 (56%), Gaps = 7/392 (1%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P+ T+ +F L L+ ++ C+ LG +PTP+Q CIP L G+D+ G A TGSGK
Sbjct: 127 PSEGTSFHANSFMELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGK 186
Query: 111 TAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
TAAFALP L RL P +LA L++TPTRELA Q+ + + +RC +VVGG+
Sbjct: 187 TAAFALPTLERLLFRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 246
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
Q SL + P +V+ATPGR+ L + L+LDEADR+L++GF E+
Sbjct: 247 TKVQEASLRSMPDIVVATPGRMIDHLRNSMSVD--LDDLAVLILDEADRLLELGFNAEIH 304
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287
+ + PK RQT+LFSATMT ++ L++LS K A K L ++ + + + +
Sbjct: 305 ELVRLCPKRRQTMLFSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRL-RRM 363
Query: 288 KDVYLMHVLSKMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
++V VL + S AIIF T ++ H L +L +A LH +Q+QRL A
Sbjct: 364 REVNQEAVLLALCSKTFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQRLDA 423
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L F+ + L+ATDVA+RGLDI V V+NY PR Y+HRVGRTARAGR G AV+
Sbjct: 424 LELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVT 483
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
FVT ND L+ I G +L EQ ++
Sbjct: 484 FVTDNDRSLLKAIAKRAGSKLRSRIVAEQSII 515
>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 442
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 217/372 (58%), Gaps = 10/372 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF+ LGLA+ +Q E G P+P+Q IP I++G DV+ AQTG+GKTA F LP+L
Sbjct: 1 MTFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAE----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
HRLA V ALV+TPTRELA Q+A+ + G L LR VV GG+ + Q L
Sbjct: 61 HRLASGKPASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L +++ F + L+LDEADR+LD+GF ++R + LPK
Sbjct: 121 RRGADILVATPGRLLDLYQQNA---VRFDHLEVLILDEADRMLDMGFIHDIRKIISFLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT ++D+++L + N T T+KQ + K K L +
Sbjct: 178 KRQNLMFSATFSTDIRSLAKTLVNNPIEISVSPANSTATTVKQWIAPVDKKKKPELLSQL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
++ + + ++F T + L+ LE + A A+H KSQ R AL FK+G
Sbjct: 238 INTHQWTQV---LVFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDK 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATD+A+RGLDI + V+N+D+P DYVHR+GRT RAG G A+S V+ ++V+
Sbjct: 295 QILVATDIAARGLDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGEAISLVSADEVEH 354
Query: 416 IHEIEAVVGKQL 427
+ IE ++GK L
Sbjct: 355 LWNIERLIGKNL 366
>gi|396082239|gb|AFN83849.1| ATP-dependent RNA helicase [Encephalitozoon romaleae SJ-2008]
Length = 397
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/371 (41%), Positives = 214/371 (57%), Gaps = 10/371 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + E ++ C+ G+ +PT +Q IP IL G D++ ++QTGSGKT AF LPI+
Sbjct: 3 FDELRVDESLIRICEGNGITKPTEIQEQVIPVILGGNDIIAVSQTGSGKTLAFVLPIVSC 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L L+I PTREL+ Q+AE F LR ++VGG QA L PHV
Sbjct: 63 LLLKDRSFYCLIIAPTRELSSQIAECFNMFEET-GLRVCLLVGGTSFNVQANQLSKHPHV 121
Query: 182 VIATPGRI--KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V+ TPGRI VL + I R + LVLDEADR + F ++L + + L + RQT
Sbjct: 122 VVGTPGRIAEHVLKTKSFRI----ERVRKLVLDEADRFFEQDFVDDLETIIRSLKEKRQT 177
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LLF+ATM+ ++ L E ++TV TLK+ YIFI K+ L+ +L
Sbjct: 178 LLFTATMSDEISKLSNSILRNPKIIRVVEKYETVPTLKEYYIFIAMKWKNASLVELLEM- 236
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+ GI S I+FVS C + ++SL L +L + ALH Q +R + FK + +L+
Sbjct: 237 -NPGI-SVIVFVSMCITARVMSLALSKLGFHSEALHGELIQEKREETMRMFKESKFNVLV 294
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
TDV SRGLDI VDLV+N+D+P+ +DY+HRVGRTARAGR G A++ VTQ DV+ +
Sbjct: 295 CTDVGSRGLDISHVDLVINFDVPKNGKDYIHRVGRTARAGRSGTAITLVTQYDVEQFQRM 354
Query: 420 EAVVGKQLEEF 430
E + K LEEF
Sbjct: 355 EFALKKSLEEF 365
>gi|440748527|ref|ZP_20927779.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
gi|436483035|gb|ELP39111.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
Length = 410
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 224/376 (59%), Gaps = 11/376 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+ F LG+ + +Q + G PTP+Q IP +L+G+D+LG AQTG+GKTAAFA+PI+
Sbjct: 1 MAFKNLGIIDPILQALAQEGYTTPTPIQQQAIPIVLQGRDLLGCAQTGTGKTAAFAIPII 60
Query: 120 HRLAEDPY---GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
LAE G+ AL++TPTRELA Q+ E F A G + V+ GG+ L Q +L
Sbjct: 61 QHLAEKKQHRPGIKALILTPTRELAIQIDESFAAYGRFAKISHTVIFGGVSQLHQVNALK 120
Query: 177 NRPHVVIATPGRIKVLL-EEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L+ ++ D+ S+ + VLDEADR+LD+GF +++ V LP
Sbjct: 121 RGVDVLVATPGRLLDLIGQKYIDL----SKLEIFVLDEADRMLDMGFIHDVKKVIALLPS 176
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTL FSATM ++Q L + E TV+ ++Q+ + K K L+++
Sbjct: 177 KRQTLFFSATMPPEIQKLADSLLTHPALVEVTPPSSTVDKIEQRLYYTNKGDKPALLLYL 236
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L ++ I SA++F T + LL+ + A+H KSQ+ R +AL+ FKSG+
Sbjct: 237 L---QEKKIGSALVFTRTKHGADKVVKLLQREKVKCAAIHGNKSQNNRQNALNDFKSGKL 293
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DI + V NYD+P P YVHR+GRT RAG GLA+SFV +
Sbjct: 294 QVLVATDIAARGIDIDELANVFNYDLPNIPETYVHRIGRTGRAGNSGLAMSFVDGETLKE 353
Query: 416 IHEIEAVVGKQLEEFE 431
+ +IE ++GK++ E
Sbjct: 354 LKDIEKLIGKKIPVIE 369
>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 481
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 216/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQQGSAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++T+ T +KQ + + K K MH
Sbjct: 178 VQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ A++FV T L+ +L+E +H K Q RL AL RFK+G+
Sbjct: 238 LVAENN---WDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++G+ L E
Sbjct: 355 QLAAIEALIGQTLRREE 371
>gi|395003518|ref|ZP_10387653.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394318531|gb|EJE54950.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 499
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 221/378 (58%), Gaps = 14/378 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQNPITIEVARPNETASTVEQRFYSANDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL + G++ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIHQVL---KTRGLKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KKGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSG 355
Query: 411 NDVDLIHEIEAVVGKQLE 428
+D L+ +IE ++ K++E
Sbjct: 356 SDARLVADIEKLIKKKIE 373
>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 480
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 220/377 (58%), Gaps = 14/377 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T ++ L LAE + ++G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TQPYSTLALAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHENSSASPARHPVRALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTAELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSVQDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ HVL+ + G++ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIRHVLT---ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V
Sbjct: 296 KSGDVDLLVCTDVAARGLDIKDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLVGS 355
Query: 411 NDVDLIHEIEAVVGKQL 427
D L+ +IE ++ K++
Sbjct: 356 GDARLVADIEKLIKKKV 372
>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 511
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 219/380 (57%), Gaps = 11/380 (2%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+++++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FAL
Sbjct: 32 NTSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFAL 91
Query: 117 PILHRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
P+L RL + V + LV+ PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 92 PLLQRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQ 151
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF
Sbjct: 152 MMKLRKGVDVLVATPGR---LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFA 208
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQTLLFSAT T D++T+ T +KQ + + K K
Sbjct: 209 ALPVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDL 268
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
MH++++ A++FV T L+ +L+E +H K Q RL AL RFK
Sbjct: 269 FMHLVAENN---WDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFK 325
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V +
Sbjct: 326 TGEVQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCAD 385
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
+ + IEA++G+ L E
Sbjct: 386 EAPQLAAIEALIGQTLRREE 405
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 222/378 (58%), Gaps = 14/378 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + ++G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK+R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SYLPKSRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRY 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL + + IR A IF ++ C L+ LE A ALH KSQ +RL AL F
Sbjct: 239 AIRSVLKERD---IRQAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G+ +L+ TDVA+RGLDI V V NYD+P DYVHR+GRT RAG GLAV+ VT
Sbjct: 296 KAGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTD 355
Query: 411 NDVDLIHEIEAVVGKQLE 428
+D + +IE ++ K+++
Sbjct: 356 HDSRNVADIEKLIKKKID 373
>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
Length = 423
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 219/373 (58%), Gaps = 14/373 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ +E G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L ++ G+ AL++TPTRELA Q+ E F+A G LR V+ GG+ Q L
Sbjct: 61 QKLYKTDNRKGIKALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDELKR 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTK---FLVLDEADRVLDVGFEEELRVVFQCLP 234
+++ATPGR++ L+ + F K F VLDEADR+LD+GF ++R + + LP
Sbjct: 121 GVQILVATPGRLQDLVNQG------FINLKALDFFVLDEADRMLDMGFIHDIRRILKFLP 174
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTL FSATM +++TL E TV+T+ Q F+ K K L+H
Sbjct: 175 AKRQTLFFSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIH 234
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I S +IF T L+ L + A A+H KSQ+ R AL FKS
Sbjct: 235 LL---KDPSIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHT 291
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF ++
Sbjct: 292 LRVLIATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELP 351
Query: 415 LIHEIEAVVGKQL 427
+ +I+ ++GK +
Sbjct: 352 YLKDIQKLIGKTI 364
>gi|375357970|ref|YP_005110742.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
Length = 427
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 8/370 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ ++ G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + + G+ ALV+TPTRELA Q+ E F+A G L+ V+ GG+ Q +L +
Sbjct: 61 QKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+++ATPGR+ L+ + S F VLDEADR+LD+GF +++ + + LP R
Sbjct: 121 GIQILVATPGRLLDLISQGF---ISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARR 177
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL FSATM +++TL K E TV+ + QQ F+ K K L+H+L
Sbjct: 178 QTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLL- 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D I S +IF T L+ +L + A A+H K+Q+ R AL FK+
Sbjct: 237 --KDTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRA 294
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF ++ +
Sbjct: 295 LIATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLK 354
Query: 418 EIEAVVGKQL 427
+I+ ++GK++
Sbjct: 355 DIQKLIGKKI 364
>gi|52840505|ref|YP_094304.1| DEAD/DEAH box helicase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 414
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 226/393 (57%), Gaps = 10/393 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L L E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPIL
Sbjct: 1 MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60
Query: 120 HRLAE----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+ ++ P V L++TPTRELA Q+ E G L LR V+ GG+ Q K L
Sbjct: 61 QKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 DSGLEILVATPGRLLDLYQQRA---VKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT T +++ L NKA + V+T+KQ + +N K L H+
Sbjct: 178 KRQNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++F T + L L E +VA+H KSQ+QR+ AL FKSG+
Sbjct: 238 LHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++ L
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ ++LE + K+ E L + + A+
Sbjct: 355 LLSIEKLINQKLERIKIKDFEFLHNFSDFVSAK 387
>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 506
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/435 (37%), Positives = 243/435 (55%), Gaps = 14/435 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++ A++ LG PTPVQ IP LEG+D++ A+TG+GKTAAF+LP L R
Sbjct: 4 FNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 63
Query: 122 L--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L A+ G L LV+TPTRELA Q+ E A+ + H R VVGG+ Q L +
Sbjct: 64 LGHAKGGQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHGV 123
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
++IATPGR+ L+E+ + LVLDEADR+LD+GF ++ + P +RQT
Sbjct: 124 DILIATPGRLVDLMEQGA---VRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQT 180
Query: 240 LLFSATMTSDLQ-TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
LLFSAT+ + ++ ++ +L + A+ A++G +T +T++Q + + + +K L VL+
Sbjct: 181 LLFSATIDASIKNSVGKLLHDPAFVEIAHKG-ETADTVEQYIVHVAQTLKPALLKAVLA- 238
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ G I+F T L+ A A+HS +SQ+QR AL F +G+ +L
Sbjct: 239 --EKGSDRVIVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVL 296
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDV +RG+D+ VD V+NYD+P P DYVHR+GRT RAG G AVSFV+ D + +
Sbjct: 297 VATDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRD 356
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATM----KLMDDGFEEKAKERKKQKLKM 474
IE ++ + + E E + A ++ E A+ERKK K +
Sbjct: 357 IEKLIKRPIPEMEVPSFDAEQAAEEAAGKAARADARRDPEIKQAAKEMAARERKKAKARE 416
Query: 475 LAEKGSLKKRSEKRK 489
A+ K + KRK
Sbjct: 417 QAQAEDAPKNAPKRK 431
>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 516
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/435 (37%), Positives = 243/435 (55%), Gaps = 14/435 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++ A++ LG PTPVQ IP LEG+D++ A+TG+GKTAAF+LP L R
Sbjct: 14 FNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 73
Query: 122 L--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L A+ G L LV+TPTRELA Q+ E A+ + H R VVGG+ Q L +
Sbjct: 74 LGHAKGGQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHGV 133
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
++IATPGR+ L+E+ + LVLDEADR+LD+GF ++ + P +RQT
Sbjct: 134 DILIATPGRLVDLMEQGAV---RLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQT 190
Query: 240 LLFSATMTSDLQ-TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
LLFSAT+ + ++ ++ +L + A+ A++G +T +T++Q + + + +K L VL+
Sbjct: 191 LLFSATIDASIKNSVGKLLHDPAFVEIAHKG-ETADTVEQYIVHVAQTLKPALLKAVLA- 248
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ G I+F T L+ A A+HS +SQ+QR AL F +G+ +L
Sbjct: 249 --EKGSDRVIVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVL 306
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDV +RG+D+ VD V+NYD+P P DYVHR+GRT RAG G AVSFV+ D + +
Sbjct: 307 VATDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRD 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATM----KLMDDGFEEKAKERKKQKLKM 474
IE ++ + + E E + A ++ E A+ERKK K +
Sbjct: 367 IEKLIKRPIPEMEVPSFDAEQAAEEAAGKAARADARRDPEIKQAAKEMAARERKKAKARE 426
Query: 475 LAEKGSLKKRSEKRK 489
A+ K + KRK
Sbjct: 427 QAQAEDAPKNAPKRK 441
>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60681162|ref|YP_211306.1| ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343]
gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|383117799|ref|ZP_09938542.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|423249596|ref|ZP_17230612.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|423256091|ref|ZP_17237019.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|423258064|ref|ZP_17238987.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|423264968|ref|ZP_17243971.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|423268460|ref|ZP_17247432.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|423273980|ref|ZP_17252927.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|423285051|ref|ZP_17263934.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
9343]
gi|251946848|gb|EES87130.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|387777510|gb|EIK39607.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|392649282|gb|EIY42960.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|392655681|gb|EIY49323.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|392703744|gb|EIY96885.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|392704701|gb|EIY97836.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|392707413|gb|EIZ00532.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|404579640|gb|EKA84354.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
Length = 427
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 220/370 (59%), Gaps = 8/370 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ ++ G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + + G+ ALV+TPTRELA Q+ E F+A G L+ V+ GG+ Q +L +
Sbjct: 61 QKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+++ATPGR+ L+ + S F VLDEADR+LD+GF +++ + + LP R
Sbjct: 121 GIQILVATPGRLLDLISQGF---ISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARR 177
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL FSATM +++TL K E TV+ + QQ F+ K K L+H+L
Sbjct: 178 QTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLL- 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D I S +IF T L+ +L + A A+H K+Q+ R AL FK+
Sbjct: 237 --KDTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRA 294
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF ++ +
Sbjct: 295 LIATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLK 354
Query: 418 EIEAVVGKQL 427
+I+ ++GK +
Sbjct: 355 DIQKLIGKNI 364
>gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
Alcoy]
gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
Alcoy]
Length = 414
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 226/393 (57%), Gaps = 10/393 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L L E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPIL
Sbjct: 1 MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+ ++ V L++TPTRELA Q+ E G L LR V+ GG+ Q K L
Sbjct: 61 QKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 DSGLEILVATPGRLLDLYQQGA---VKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT T +++TL NKA + V+T+KQ + +N K L H+
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++F T + L L E +VA+H KSQ+QR AL FKSG+
Sbjct: 238 LHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++ L
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ ++LE + K+ E L + + + A+
Sbjct: 355 LLSIEKLINQKLERIKIKDFEFLHNFSDLVSAK 387
>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 479
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 219/383 (57%), Gaps = 13/383 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA+ ++ + G PTP+Q IP ++ G+D+LG+AQTG+GKTAAFALPILHR
Sbjct: 4 FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 63
Query: 122 LAEDP-----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
LAED G LV++PTRELA Q+AE F+ G + L + GG+ Q K+L
Sbjct: 64 LAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALA 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
VV+ATPGR+ L E + + VLDEAD++LD+GF +R + LPK
Sbjct: 124 AGVDVVVATPGRLMDHLGEKS---AHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKE 180
Query: 237 RQTLLFSATMTSDLQTLL-ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L FSATM S++ L EL N A TVE + Q IFI K L +
Sbjct: 181 RQNLFFSATMPSEIGKLAGELLKNPAQV-AITPSATTVERIDQSLIFIEAQRKRPLLAEL 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+ D + +I+F T R ++ L EA A+H K+Q QR AL FK+GQ
Sbjct: 240 LA---DKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQV 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+D+ V V NY++P P YVHR+GRTAR G+ G+A+SF ++ +L
Sbjct: 297 KALIATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGKEGIAISFCADDERNL 356
Query: 416 IHEIEAVVGKQLEEFECKEQEVL 438
+ +I+ + + F+ + + L
Sbjct: 357 LKDIQKATRQTIPTFDRRNDKNL 379
>gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella
pneumophila str. Corby]
gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
str. Corby]
Length = 414
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 226/393 (57%), Gaps = 10/393 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L L E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPIL
Sbjct: 1 MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+ ++ V L++TPTRELA Q+ E G L LR V+ GG+ Q K L
Sbjct: 61 QKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 DSGLEILVATPGRLLDLYQQGA---VKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT T +++TL NKA + V+T+KQ + +N K L H+
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++F T + L L E +VA+H KSQ+QR AL FKSG+
Sbjct: 238 LHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++ L
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ ++LE + K+ E L + + + A+
Sbjct: 355 LLSIEKLINQKLERIKIKDFEFLHNFSDLVSAK 387
>gi|390574051|ref|ZP_10254201.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389933989|gb|EIM95967.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 481
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 214/377 (56%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA QL + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQLLQSFIAYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++ + T +KQ + + K K MH
Sbjct: 178 TQRQTLLFSATFTDDIRAMAAGILRGPVNISVSPPNATASKIKQWVVTVDKKNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ A++FV T L+ +L+E +H K Q RL AL RFK+G+
Sbjct: 238 LVAENH---WEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VNMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQMLPREE 371
>gi|377807736|ref|YP_004978928.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357938933|gb|AET92490.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 466
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/379 (41%), Positives = 217/379 (57%), Gaps = 15/379 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ + L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNVQALDYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAE-------DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
RL + + GVL LV PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAASSNRAGVLVLV--PTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQM 118
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL +F
Sbjct: 119 MKLRKGVDVLVATPGR---LLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELNAIFAA 175
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
LP RQTLLFSAT T D++ + T +KQ + + K K
Sbjct: 176 LPAERQTLLFSATFTDDIRAMAASILRGPVNISVSPPNATASRIKQWVVPVDKRNKPELF 235
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
MH++++ + A++FV T + L+ +L+E +H K Q RL AL RFK+
Sbjct: 236 MHLVAENK---WEHALVFVKTRKGVDYLAAMLDEAGYAIDTIHGDKPQPARLRALERFKT 292
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G+ +L+ATDVA+RGLDI + LV+N D+P +DYVHRVGRT RAG G+AVS V ++
Sbjct: 293 GEVQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRVGRTGRAGASGVAVSLVCADE 352
Query: 413 VDLIHEIEAVVGKQLEEFE 431
+ IEA++G+ L E
Sbjct: 353 APQLAAIEALIGETLSREE 371
>gi|398811913|ref|ZP_10570698.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398079456|gb|EJL70309.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 487
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 159/386 (41%), Positives = 225/386 (58%), Gaps = 19/386 (4%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLMLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L R+ + P + V ALV+ PTRELA Q+A+Q K +LR VV GG+D+
Sbjct: 62 LQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q + + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLASSYLQNPVTIEVARPNETASTVEQHFYSVGDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L ++ + GI A +FV++ C L+ LE ALH KSQ +RL AL F
Sbjct: 239 ALKQIVKQR---GITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALAAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT- 409
K+G+ +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAVSF +
Sbjct: 296 KAGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFASG 355
Query: 410 QNDVDLIHEIEAVVGKQLE----EFE 431
ND L+ +IE ++ K++E EFE
Sbjct: 356 GNDARLVADIEKLIKKKIELEPVEFE 381
>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
Length = 425
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 223/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+AE F+ G ++L+ V+ GG+ Q K L
Sbjct: 63 LSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTKVL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + +F VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----EFFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLINKEI 368
>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
Length = 506
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 215/370 (58%), Gaps = 14/370 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
+A L LAE + ++G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+L R
Sbjct: 20 YADLTLAEPLKRAVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQR 79
Query: 122 L------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
L + P + V ALV+ PTRELA Q+A+Q K HLR VV GGMD+ Q
Sbjct: 80 LLKHENASTSPARHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTL 139
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ + L
Sbjct: 140 ELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHL 196
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
PK R TLLFSAT + +++ L E T T++Q + + ++ K L
Sbjct: 197 PKQRTTLLFSATFSPEIKRLASSYLQNPITIEVARSNATATTVEQHFYSVGEDDKRHALR 256
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
VL D ++ A +FV++ C L+ LE + ALH KSQ +RL AL FK G
Sbjct: 257 QVL---RDKNLKQAFVFVNSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKG 313
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ +L+ TDVA+RGLDI V V N DIP DYVHR+GRT RAG G+AVSFV+ DV
Sbjct: 314 EVDLLVCTDVAARGLDIKDVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVAVSFVSPRDV 373
Query: 414 DLIHEIEAVV 423
+ EIE ++
Sbjct: 374 KSVAEIEKLI 383
>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 489
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 227/401 (56%), Gaps = 19/401 (4%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L E +T T++Q + + K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYSANDDDKRH 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL + GI+ A IFV++ C L+ LE + ALH KSQ +RL AL F
Sbjct: 239 AIHQVL---KSRGIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KQGAVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSG 355
Query: 411 NDVDLIHEIEAVVGKQ-----LEEFECKEQEVLSDITRVYK 446
+D L+ +IE ++ K+ LE E + L+D R ++
Sbjct: 356 SDARLVADIEKLLKKKIDIEALEYDEDRPHGRLNDGRRAWR 396
>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|397662231|ref|YP_006502931.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|394350410|gb|AFN36324.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|399115832|emb|CCG18635.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis
14/56]
Length = 442
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 222/390 (56%), Gaps = 18/390 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
F G ++ + G TP+Q ILEG+D++G AQTG+GKTAAF LPIL+
Sbjct: 5 NFKDFGFHSKILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILN 64
Query: 121 RL----------AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
RL A+ P V LV+TPTRELA Q+++ GL L+C ++ GG+D+ +
Sbjct: 65 RLIPKANYSTSPAKHP--VRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINS 122
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q + LM +VIATPGR LL+ ++ +FLVLDEADR+LD+GF +L +
Sbjct: 123 QKQELMRGADIVIATPGR---LLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRIL 179
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK+RQ+LL+SAT + ++++L + N T T+KQ+ + ++ K+
Sbjct: 180 SNLPKSRQSLLYSATFSENIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSESDKNA 239
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L+++L+ + IIF + +C L LL D +LH KSQ +R AL F
Sbjct: 240 ALVYILTSR---AFNNVIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLF 296
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KS + IL+ATDVA+RGLDI VD V+NY++P DYVHR+GRT RAG+ G+A+S +
Sbjct: 297 KSSKCNILVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSS 356
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSD 440
+ + EIE + G + ++ +V +
Sbjct: 357 EEGKSLSEIETLTGLKFQKLSLSIPDVFKN 386
>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
Length = 498
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 223/379 (58%), Gaps = 18/379 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
VTFA LGL+ + + G PTP+Q IP IL GKDV+ AQTG+GKTA F LP+L
Sbjct: 5 VTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64
Query: 120 HRL----------AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
+RL A P V AL++ PTRELA Q+ E + G L LR VV GG+++
Sbjct: 65 YRLQAYANTSVSPARHP--VRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIE 122
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q +L +++ATPGR+ L+E+ FS+T+ LVLDEADR+LD+GF +++ V
Sbjct: 123 PQIAALQAGVEILVATPGRLLDLVEQKA---VNFSKTEILVLDEADRMLDMGFLPDIKRV 179
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
L RQ+L+FSAT + +++ L + + EA E++ ++ + K
Sbjct: 180 MALLSPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKF 239
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L+H++ + ++ A+IFV T L+ +L + AVA+H ++Q QR AL
Sbjct: 240 ALLLHLIRQQN---LKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAE 296
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK G IL+ATDVA+RG+DI + V+NY++P P DYVHR+GRT RAG G A+S V+
Sbjct: 297 FKHGDVQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVS 356
Query: 410 QNDVDLIHEIEAVVGKQLE 428
+++ +L+ IE ++ +LE
Sbjct: 357 EHEKELLANIEKLLNAKLE 375
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 228/397 (57%), Gaps = 13/397 (3%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P++ T + TF +GL + +Q G +PTP+Q IP +++GKD+LG+AQTG+GK
Sbjct: 7 PHAKDTAVSTTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGK 66
Query: 111 TAAFALPILHRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 165
TAAFALPILHRLAE+ P LV++PTRELA Q+ + FKA G+ L R V+ GG
Sbjct: 67 TAAFALPILHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGG 126
Query: 166 MDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224
+ Q ++L +++A PGR+ + +++ D+ S T+ LVLDEAD++LD+GF +
Sbjct: 127 VKYGAQERALQQGLDILVAAPGRLLDHIQQKNLDL----SSTEILVLDEADQMLDLGFIK 182
Query: 225 ELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP 284
+R + +P RQ L FSATM +++ L + TV+ + Q + +
Sbjct: 183 PIRQIVSRIPAKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVE 242
Query: 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRL 344
+ K L + S E ++F T ++ LE EA A+H KSQ QR
Sbjct: 243 QGRKRALLTEMFSDPE---YTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRE 299
Query: 345 SALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA 404
L FK G+ +L+ATD+A+RG+D+ V V+N+++P P YVHR+GRTARAG G A
Sbjct: 300 RTLDAFKKGKLRVLVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTA 359
Query: 405 VSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDI 441
+SFV +++ L+ +IE V +++ + + + L +
Sbjct: 360 ISFVAGDEMKLLKDIEKVTRQKIPAIDRRNDKALGQL 396
>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
Length = 441
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 230/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEANHNVPITSMSHKTKAKKIDEVKII 400
>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
Length = 444
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 223/394 (56%), Gaps = 16/394 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LGL+ ++ +LG PTP+Q IP +++G+D+LG+AQTG+GKT F LP+L
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 120 HRLAEDP-YGVL--ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
H++AE +G+ ALV++PTRELA Q+ + K LH ++VGG+D + Q ++L
Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+V+ATPGR LL+ + T +++DEADR+LD+GF ++ + + LPK
Sbjct: 121 RNWDIVVATPGR---LLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKG 177
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQ+LLFSAT +Q L N A K + + Q++I + + + L L
Sbjct: 178 RQSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGL---L 234
Query: 297 SKMEDMG---IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
K+ D G IIF T RS LS+ L + + ALH KSQ R L RF+ G
Sbjct: 235 KKVLDEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRG 294
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+ATDVA+RGLDI + V+NYD+P+ DYVHR+GRT RAGR G A+SF D
Sbjct: 295 DLKVLVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADR 354
Query: 414 DLIHEIEAVVGKQL----EEFECKEQEVLSDITR 443
D++ IE + GK + EQ + TR
Sbjct: 355 DIVRSIETMAGKPIPHSPHSIPLSEQSLRKTFTR 388
>gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|423279249|ref|ZP_17258162.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|404585418|gb|EKA90034.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
Length = 427
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 219/370 (59%), Gaps = 8/370 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ ++ G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + + G+ ALV+TPTRELA Q+ E F+A G L+ V+ GG+ Q +L
Sbjct: 61 QKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRG 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+++ATPGR+ L+ + + F VLDEADR+LD+GF +++ + + LP R
Sbjct: 121 GIQILVATPGRLLDLISQGF---VSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKR 177
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL FSATM +++TL K E TV+ + QQ F+ K K L+H+L
Sbjct: 178 QTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLL- 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D I S +IF T L+ +L + A A+H K+Q+ R AL FK+
Sbjct: 237 --KDASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRA 294
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF ++ +
Sbjct: 295 LIATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLK 354
Query: 418 EIEAVVGKQL 427
+I+ ++GK +
Sbjct: 355 DIQKLIGKNI 364
>gi|424662680|ref|ZP_18099717.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
gi|404576370|gb|EKA81108.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
Length = 427
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 219/370 (59%), Gaps = 8/370 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ ++ G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L + + G+ ALV+TPTRELA Q+ E F+A G L+ V+ GG+ Q +L
Sbjct: 61 QKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRG 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+++ATPGR+ L+ + + F VLDEADR+LD+GF +++ + + LP R
Sbjct: 121 GIQILVATPGRLLDLISQGF---VSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKR 177
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL FSATM +++TL K E TV+ + QQ F+ K K L+H+L
Sbjct: 178 QTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLL- 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D I S +IF T L+ +L + A A+H K+Q+ R AL FK+
Sbjct: 237 --KDASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRA 294
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF ++ +
Sbjct: 295 LIATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLK 354
Query: 418 EIEAVVGKQL 427
+I+ ++GK +
Sbjct: 355 DIQKLIGKNI 364
>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
HTCC2516]
gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
HTCC2516]
Length = 406
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 218/377 (57%), Gaps = 18/377 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LGL+ E G+ PTP+QT IP LEG+DVLGLAQTG+GKTAAF LP++
Sbjct: 1 MTFENLGLSPRLAARLAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLI 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKAL-GSGLHLRCEVVVGGMDLLTQAK 173
L P VLAL++ PTRELA Q+ + +A G+G R +VVGG + QA
Sbjct: 61 QALTAAGTHAAPNTVLALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQAN 120
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
+L +++ATPGR+ LL+ + ++LVLDEAD++LD+GF LR + L
Sbjct: 121 ALRRGTDILVATPGRLIDLLDRKA---LTLGKARYLVLDEADQMLDLGFIHALRRIAPLL 177
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
PK RQT+LFSATM + + + K + + Q F+ K+ K L+
Sbjct: 178 PKERQTMLFSATMPKQMSEIAGAYLTDPVRVQVSPPGKPADKVDQSVHFVAKDAKQALLI 237
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA---LHSFKSQSQRLSALHRF 350
+L D A++F R+ H L+++LD+ A +H KSQ QR AL F
Sbjct: 238 DLLDAHRD---ERALVF---ARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGF 291
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
+ G+ +L+ATDVA+RG+DIP V V NY++P P +YVHR+GRTARAG G AV+F +
Sbjct: 292 REGKVRVLVATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAVAFCGE 351
Query: 411 NDVDLIHEIEAVVGKQL 427
++ + +IE V+GK +
Sbjct: 352 EEMGELRDIEKVLGKPI 368
>gi|410479720|ref|YP_006767357.1| DEAD/DEAH box helicase [Leptospirillum ferriphilum ML-04]
gi|406774972|gb|AFS54397.1| DEAD/DEAH box helicase domain protein [Leptospirillum ferriphilum
ML-04]
Length = 444
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 223/394 (56%), Gaps = 16/394 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LGL+ ++ +LG PTP+Q IP +++G+D+LG+AQTG+GKT F LP+L
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 120 HRLAEDP-YGVL--ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
H++AE +G+ ALV++PTRELA Q+ + K LH ++VGG+D + Q ++L
Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+V+ATPGR LL+ + T +++DEADR+LD+GF ++ + + LPK
Sbjct: 121 RNWDIVVATPGR---LLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKG 177
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQ+LLFSAT +Q L N A K + + Q++I + + + L L
Sbjct: 178 RQSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGL---L 234
Query: 297 SKMEDMG---IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
K+ D G IIF T RS LS+ L + + ALH KSQ R L RF+ G
Sbjct: 235 KKVLDEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRG 294
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+ATDVA+RGLDI + V+NYD+P+ DYVHR+GRT RAGR G A+SF D
Sbjct: 295 DLKVLVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADR 354
Query: 414 DLIHEIEAVVGKQL----EEFECKEQEVLSDITR 443
D++ IE + GK + EQ + TR
Sbjct: 355 DIVRSIETMAGKPIPHSPHSIPLSEQSLRKTFTR 388
>gi|226468596|emb|CAX69975.1| ATP-dependent rRNA helicase RRP3 [Schistosoma japonicum]
gi|226484750|emb|CAX74284.1| ATP-dependent rRNA helicase RRP3 [Schistosoma japonicum]
Length = 563
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 229/393 (58%), Gaps = 33/393 (8%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF+ LG+ + + C L + PT +Q IP LEG++++ LA+TGSGKT A+ALPI+
Sbjct: 5 TFSELGIGDELQKACHNLRWKEPTAIQVLSIPPALEGRNLVALAETGSGKTGAYALPIIQ 64
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM--NR 178
+L ++P+ ALV+ PTRELA Q+ QF ALG + L ++VGG+ + TQ LM +
Sbjct: 65 KLLQNPHPFFALVLAPTRELAAQVQAQFNALGKTIGLSTALLVGGVPI-TQQSDLMKISP 123
Query: 179 PHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
PHVVIATPGR L++ + F + LV+DEADR+L V FE + + +P R
Sbjct: 124 PHVVIATPGRFVDHLKKTKGFDELKFKNLRILVIDEADRMLGVDFESVIEKILCIVPTKR 183
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEG-FKTVETLKQQYIFIPKNVKDVYLMHVL 296
QT LFSATMT + L S + + F+++ L+Q +P+ D YL+++L
Sbjct: 184 QTFLFSATMTDKVGKLQRASVHDPVRVSTRKSKFQSLTNLRQYVHLVPQCEIDTYLVYLL 243
Query: 297 ---------------------SKMEDMGIRS-----AIIFVSTCRSCHLLSLLLEE-LDQ 329
S+ ED +S I+F T + + L+LLL + L Q
Sbjct: 244 RVALCPEIQVPGLDLIKLQSTSENEDSDDQSFMSTSVIVFTRTRVASNRLNLLLRQFLRQ 303
Query: 330 EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYV 389
+AL+ Q+QRL ALH+FK Q +L+ATDVASRGLDIP V LV+NYD+P + Y+
Sbjct: 304 PVIALNGDMLQAQRLGALHKFKRTQGAVLVATDVASRGLDIPQVGLVVNYDVPLDAKIYM 363
Query: 390 HRVGRTARAGRGGLAVSFVTQNDVD-LIHEIEA 421
HRVGRTARAGR G A++ +TQ V + EIE+
Sbjct: 364 HRVGRTARAGRHGCALTLLTQYSVTFFLKEIES 396
>gi|424868021|ref|ZP_18291789.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'5-way CG']
gi|387221616|gb|EIJ76157.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
Length = 444
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 223/394 (56%), Gaps = 16/394 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LGL+ ++ +LG PTP+Q IP +++G+D+LG+AQTG+GKT F LP+L
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 120 HRLAEDP-YGVL--ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
H++AE +G+ ALV++PTRELA Q+ + K LH ++VGG+D + Q ++L
Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+V+ATPGR LL+ + T +++DEADR+LD+GF ++ + + LPK
Sbjct: 121 RNWDIVVATPGR---LLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKG 177
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQ+LLFSAT +Q L N A K + + Q++I + + + L L
Sbjct: 178 RQSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGL---L 234
Query: 297 SKMEDMG---IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
K+ D G IIF T RS LS+ L + + ALH KSQ R L RF+ G
Sbjct: 235 KKVLDEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRG 294
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+ATDVA+RGLDI + V+NYD+P+ DYVHR+GRT RAGR G A+SF D
Sbjct: 295 DLKVLVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADR 354
Query: 414 DLIHEIEAVVGKQL----EEFECKEQEVLSDITR 443
D++ IE + GK + EQ + TR
Sbjct: 355 DIVRSIETMAGKPIPHSPHSIPLSEQSLRKTFTR 388
>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
HTCC2999]
Length = 442
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 223/380 (58%), Gaps = 11/380 (2%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ LGL+ +Q + G +P+P+Q I +L+G+DV+ AQTG+GKT AFALPI
Sbjct: 2 TTSFSDLGLSPAVLQAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALPI 61
Query: 119 LHRLAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
++ L+E P + AL++TPTRELA Q+AE KA LR VV GG+ + Q +
Sbjct: 62 VNLLSETSKRPSPNNIKALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQ 121
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L ++IATPGR+ L +++ FS+ + LVLDEADR+LD+GF +++ + + +
Sbjct: 122 GLRRGCDILIATPGRLLDLHQQNA---VKFSQLEILVLDEADRMLDMGFIHDIKRIMKLI 178
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P RQTLLFSAT + ++ L + + T +KQ + K+ K L+
Sbjct: 179 PAKRQTLLFSATFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLVHAEKSSKTTLLI 238
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
++ +D + ++F T + ++ L + A A+H KSQ R AL FKSG
Sbjct: 239 KLI---KDNDWQQVLVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSG 295
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+ATD+A+RG+DI + V+NYD+P P DYVHR+GRT RAG G AVSF T D+
Sbjct: 296 DVRVLVATDIAARGIDIDQLPNVINYDLPHVPEDYVHRIGRTGRAGATGHAVSFATNEDI 355
Query: 414 DLIHEIEAVVGKQLEEFECK 433
+++I+ ++G+ +E E +
Sbjct: 356 KQLNDIQNLIGEHIEVLEVE 375
>gi|420251223|ref|ZP_14754408.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398058303|gb|EJL50202.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 481
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 214/377 (56%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA QL + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQLLQSFIAYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++ + T +KQ + + K K MH
Sbjct: 178 TQRQTLLFSATFTDDIRAMAAGILRGPVNISVSPPNATASKIKQWVVTVDKKNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ A++FV T L+ +L+E +H K Q RL AL RFK+G+
Sbjct: 238 LVAENH---WEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VNMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLPREE 371
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 218/382 (57%), Gaps = 7/382 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F L L+ ++ C+ LG +PTP+Q CIP L G+D+ G A TGSGKTAAF+LP L
Sbjct: 126 SFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLE 185
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A LV+TPTRELA Q+ + L +RC ++VGG+ Q +L +
Sbjct: 186 RLLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRS 245
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P VV+ATPGR+ L + L+LDEADR+L++GF E+R + + PK R
Sbjct: 246 MPDVVVATPGRMIDHLRNSMSVD--LEDLAVLILDEADRLLELGFNAEIRELVRLCPKRR 303
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QT+LFSATMT ++ L++LS K A K TL ++ + I + +++V VL
Sbjct: 304 QTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRI-RRMREVNQEAVLL 362
Query: 298 KMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ + AIIF T ++ H L +L +A LH +Q QRL AL F+ Q
Sbjct: 363 ALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVD 422
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+ATDVA+RGLDI V V+NY PR YVHRVGRTARAGR G AV+FVT ND L+
Sbjct: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
Query: 417 HEIEAVVGKQLEEFECKEQEVL 438
I G +L EQ ++
Sbjct: 483 KSIVKRAGSKLRSRIVAEQSII 504
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 217/376 (57%), Gaps = 18/376 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F G ++ G TP+Q P ILEG+DV+G AQTG+GKTAAF LP+L+R
Sbjct: 6 FKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPLLNR 65
Query: 122 L----------AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
+ A+ P V LV+TPTRELA Q+++ A GL LR ++ GG+D Q
Sbjct: 66 MIPKASFSTSPAKHP--VRMLVLTPTRELAEQISKNVIAYADGLPLRTSLIYGGVDFNAQ 123
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
LM +VIATPGR LL+ ++ +FL+LDEADR+LD+GF +L +
Sbjct: 124 KHELMRGADIVIATPGR---LLDHVEQRTINLNQVEFLILDEADRMLDMGFMLDLLKILA 180
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQ+LL+SAT + ++++L + + T T+ Q+ + + K+
Sbjct: 181 QLPSRRQSLLYSATFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAEKNAA 240
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+++L+ + IIF + +C L L LD A +LH K+QS+R AL+ FK
Sbjct: 241 LLYLLA---SRNFNNVIIFSNRKITCKNLERYLNNLDLSAQSLHGDKTQSERTKALNLFK 297
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
S + IL+ATDVA+RGLDI VD V+NY++P DYVHR+GRT RAGR G+A+S + +
Sbjct: 298 SSKCNILVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGRKGIAISMYSSD 357
Query: 412 DVDLIHEIEAVVGKQL 427
+ + +HEIE ++G +
Sbjct: 358 EKESLHEIETLIGTKF 373
>gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 477
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 215/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++T+ T +KQ + + K K MH
Sbjct: 178 VQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWVVTVDKRNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ A++FV T L+ +L+E +H K Q RL AL RFK+G+
Sbjct: 238 LVAENN---WDHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++G+ L E
Sbjct: 355 QLAAIEALIGQTLRREE 371
>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 473
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 222/378 (58%), Gaps = 14/378 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + ++G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A+Q LR VV GGMD+
Sbjct: 62 LQRLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK+R TLLFSAT + +++ L E +T T++Q++ + + K
Sbjct: 179 SYLPKSRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVSDDDKRY 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL + + IR A IF ++ C L+ LE A ALH KSQ +RL AL F
Sbjct: 239 AIRSVLKERD---IRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G+ +L+ TDVA+RGLDI V V NYD+P DYVHR+GRT RAG GLAV+ VT
Sbjct: 296 KAGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTD 355
Query: 411 NDVDLIHEIEAVVGKQLE 428
+D + +IE ++ K+++
Sbjct: 356 HDSRNVADIEKLIKKKID 373
>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
657]
gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
657]
Length = 425
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 223/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+AE F+ G ++L+ V+ GG+ Q K L
Sbjct: 63 LSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTKVL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + +F VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----EFFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLINKEI 368
>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 479
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 216/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L G DV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPEVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GFE EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++T+ T +KQ + + K K MH
Sbjct: 178 AQRQTLLFSATFTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ A++FV T L+ +L++ +H K Q RL AL RFK+G+
Sbjct: 238 LVAENN---WEHALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
++L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VSMLVATDVAARGLDIDNLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLRREE 371
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 217/376 (57%), Gaps = 18/376 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F G ++ G TP+Q P ILEG+DV+G AQTG+GKTAAF LP+L+R
Sbjct: 6 FKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPLLNR 65
Query: 122 L----------AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
+ A+ P V LV+TPTRELA Q+++ A GL LR ++ GG+D Q
Sbjct: 66 MIPKASFSTSPAKHP--VRMLVLTPTRELAEQISKNVIAYADGLPLRTSLIYGGVDFNAQ 123
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
LM +VIATPGR LL+ ++ +FL+LDEADR+LD+GF +L +
Sbjct: 124 KLELMRGADIVIATPGR---LLDHVEQRTINLNQVEFLILDEADRMLDMGFMPDLLKILA 180
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQ+LL+SAT + ++++L + + T T+ Q+ + + K+
Sbjct: 181 QLPSRRQSLLYSATFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAEKNAA 240
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+++L+ + IIF + +C L L LD A +LH K+QS+R AL+ FK
Sbjct: 241 LLYLLA---SRNFNNVIIFSNRKITCKNLERYLNNLDLSAQSLHGDKTQSERTKALNLFK 297
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
S + IL+ATDVA+RGLDI VD V+NY++P DYVHR+GRT RAGR G+A+S + +
Sbjct: 298 SAKCNILVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGRKGIAISMYSSD 357
Query: 412 DVDLIHEIEAVVGKQL 427
+ + +HEIE ++G +
Sbjct: 358 EEESLHEIETLIGTKF 373
>gi|385792772|ref|YP_005825748.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
Length = 442
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 230/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSHKTKAKKIDEVKII 400
>gi|256087842|ref|XP_002580072.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|350646373|emb|CCD58966.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
Length = 454
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 220/384 (57%), Gaps = 13/384 (3%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S+ +F LG+ LG +P+ +Q IP L KD++GLA+TGSGKTAAFA+P
Sbjct: 2 SSKSFKELGVCNEICDVISTLGWVKPSEIQLKAIPAALRKKDIVGLAETGSGKTAAFAIP 61
Query: 118 ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
IL L P AL++TPTRELA Q+ F LG L+ +VGG + Q + L
Sbjct: 62 ILQDLLSKPRHNFALILTPTRELALQVKCLFMELGDKFGLKVVCLVGGQHVEDQVRDLKR 121
Query: 178 -RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+ HV++ TPGR+ LE ++ + ++ VLDEAD++L+ FE++L + L N
Sbjct: 122 LKFHVIVGTPGRVVYHLENTKELR--LNHVRYFVLDEADQMLEDTFEQQLAFIITKLHPN 179
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
+QT L+SATMT ++ + ++ E + V+ L ++FIP KD YL+++L
Sbjct: 180 KQTFLYSATMTQNVDKIRKVCTKSPVILEVSSKYSKVDKLDHAFVFIPDKEKDFYLIYLL 239
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKS 352
+ +IIF ST R + +L+ L + L+ Q +R S+L F++
Sbjct: 240 LSSKSADKSRSIIFTSTWRESFRIVAMLKSLADVISAASAPLNGVMQQDKRQSSLFDFRT 299
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYP------RDYVHRVGRTARAGRGGLAVS 406
G+ +IL+ATD+ASRGLD P VDLV+NYD+PR P + Y+HRVGRTARAGR G A++
Sbjct: 300 GRVSILVATDLASRGLDFPDVDLVINYDVPRRPSWSDSAKAYIHRVGRTARAGRHGRAIT 359
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEF 430
FVT V + IE+ + +++ +
Sbjct: 360 FVTPYSVTRLKAIESALNERIPQL 383
>gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
gi|423306019|ref|ZP_17284018.1| hypothetical protein HMPREF1072_02958 [Bacteroides uniformis
CL03T00C23]
gi|423309437|ref|ZP_17287427.1| hypothetical protein HMPREF1073_02177 [Bacteroides uniformis
CL03T12C37]
gi|156861394|gb|EDO54825.1| DEAD/DEAH box helicase [Bacteroides uniformis ATCC 8492]
gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
gi|392679863|gb|EIY73240.1| hypothetical protein HMPREF1072_02958 [Bacteroides uniformis
CL03T00C23]
gi|392684477|gb|EIY77802.1| hypothetical protein HMPREF1073_02177 [Bacteroides uniformis
CL03T12C37]
Length = 425
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 219/373 (58%), Gaps = 14/373 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ +E G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L ++ + AL++TPTRELA Q+ E F A G LR V+ GG+ Q L
Sbjct: 61 QKLYKTDNRKSIKALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDELKR 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTK---FLVLDEADRVLDVGFEEELRVVFQCLP 234
+++ATPGR++ L+ + F K F VLDEADR+LD+GF ++R + + LP
Sbjct: 121 GVQILVATPGRLQDLVNQG------FINLKALEFFVLDEADRMLDMGFIHDIRRILKLLP 174
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTL FSATM +++TL E TV+T+ Q F+ K K L+H
Sbjct: 175 AKRQTLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIH 234
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L ++ I+S +IF T L+ L + A A+H KSQ+ R AL FK+ +
Sbjct: 235 LL---KNPAIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHE 291
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF ++
Sbjct: 292 LRVLIATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELP 351
Query: 415 LIHEIEAVVGKQL 427
+ +I+ ++GK +
Sbjct: 352 YLKDIQKLIGKSI 364
>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
Length = 419
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 231/392 (58%), Gaps = 21/392 (5%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LGL++ ++ + G P+P+Q IPKILEGKDVL AQTG+GKTA F+LP+L
Sbjct: 1 MTFKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPML 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
H + + P+ V AL++TPTRELA Q+ ++ K + +R V+ GG++ Q ++L
Sbjct: 61 HIITKQPFQRHRPVKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRAL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCL 233
+++ATPGR+ L + VF+ + +FLVLDEADR+LD+GF ++ + L
Sbjct: 121 KQGTDILVATPGRLLDLHSQG-----VFNMKKVEFLVLDEADRMLDMGFVRDINKILAIL 175
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P RQ LLFSAT + +++ L + EA T E +KQ K+ K ++
Sbjct: 176 PAKRQNLLFSATFSKEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKTNKSAKTNLVI 235
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
+++ + +IF T + L+ L + D ++ A+H KSQ R AL FK G
Sbjct: 236 KLIT---EGNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDG 292
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+ATD+A+RGLDIP + V+NY++P P DYVHR+GRTARAG G A+S V+ ++
Sbjct: 293 SIRVLVATDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEF 352
Query: 414 DLIHEIEAVVGKQ-----LEEFECKE--QEVL 438
+ + IE ++G++ LE FE E Q+VL
Sbjct: 353 EYVKGIEKLLGEKLNSITLEGFEQTEKLQDVL 384
>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 448
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 152/385 (39%), Positives = 225/385 (58%), Gaps = 17/385 (4%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
+TVTFA LG+AE + PTP+Q IP +LEG+D+LGLAQTG+GKTAAFALP
Sbjct: 2 TTVTFADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALP 61
Query: 118 ILHRLA-----EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
IL LA P AL++ PTRELA Q+++ ++ G LR V+ GG++ Q
Sbjct: 62 ILQILAAANEKRQPKEARALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQV 121
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
K++ +V+ATPGR+ L+ + SRT LVLDEADR+LD+GF ++R +
Sbjct: 122 KAMTAGVDIVVATPGRLLDLMNQKH---VNLSRTSLLVLDEADRMLDMGFIRDVRKIIAA 178
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
+P+ RQ+LLFSATM S +Q L + + E TV+ + Q+ + + K L
Sbjct: 179 MPRQRQSLLFSATMPSSIQHLADEILREPVRVEVTPEVVTVDKIDQRVLHVDGKRKRELL 238
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV---ALHSFKSQSQRLSALHR 349
+L E + I+F R+ H + + E+LD+ V A+H KSQ R AL
Sbjct: 239 AKLLDNSE---LSRVIVF---TRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDM 292
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
F++G+A +L+ATD+A+RG+D+ + V+NY++P P YVHR+GRTARAG+ G+A+SF
Sbjct: 293 FRNGKARVLVATDIAARGIDVSDITHVINYELPNEPESYVHRIGRTARAGKSGIALSFCD 352
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKE 434
++ + IE + + L + E
Sbjct: 353 ASERSHLRSIEKLTKRPLTVMDTTE 377
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 213/368 (57%), Gaps = 8/368 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+E ++ K G TP+Q IP +L GKDV+G AQTG+GKTAAF LPIL
Sbjct: 3 FDELGLSEDLLKAVKRSGFEEATPIQEATIPLVLAGKDVIGQAQTGTGKTAAFGLPILEH 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+ + + A++I+PTRELA Q E+ LG R +VV GG D+ Q K L N P +
Sbjct: 63 VDPKEHAIQAIIISPTRELAIQTQEELYRLGKDKRARVQVVYGGADIRRQIKLLKNPPQI 122
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR LL+ S+ K LVLDEAD +LD+GF +++ + +P RQTLL
Sbjct: 123 LVGTPGR---LLDHINRKTVDLSKVKMLVLDEADEMLDMGFLDDIEKIISNVPGQRQTLL 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATM + + E + + T + + Q ++ V+D +++++ D
Sbjct: 180 FSATMPKAILRIGEKFMTEPEVVKIKAKELTTDLVDQYFV----KVRDYEKFDIMTRILD 235
Query: 302 M-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ I+F T R LS LE A +H SQ +R+S L RFK G+ IL+A
Sbjct: 236 VQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRMSILKRFKEGKLDILVA 295
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDI V V NYDIP+ P YVHR+GRT RAGR G++V+FVT N++D + IE
Sbjct: 296 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGRHGVSVTFVTPNEMDYLRVIE 355
Query: 421 AVVGKQLE 428
+ K+++
Sbjct: 356 RLTKKRMD 363
>gi|418292806|ref|ZP_12904736.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064219|gb|EHY76962.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 441
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 223/377 (59%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++T + L R+PTPVQT IP +L+G+D++ AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQTEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V ALV+ PTRELA Q+ E F+ G L LR V GG+ + Q +
Sbjct: 61 QRLTMEGAKVTSNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EEL +F LP
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNA---VGFAQLQALVLDEADRMLDLGFAEELDALFSALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQTLLFSAT + ++ + E +T+KQ + + K K +H
Sbjct: 178 KKRQTLLFSATFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L++ ++FV T + L L+ + A+H K Q+ RL AL RFK+G+
Sbjct: 238 LLAEKR---WGQVLVFVKTRKGVDQLVDELQAAGIASDAIHGDKPQASRLRALERFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G AVS V+ ++VD
Sbjct: 295 VQVLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVD 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IE ++ + L+ +
Sbjct: 355 QLAAIETLINQVLQRHD 371
>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 481
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 216/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQRGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGRGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++ + T +KQ + + K K MH
Sbjct: 178 AQRQTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+++ + G + A++FV T L+ +L+E +H K Q RL AL RFK+G+
Sbjct: 238 LVA---ENGWQHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLPRKE 371
>gi|408374555|ref|ZP_11172240.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407765513|gb|EKF73965.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 452
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL++ + E G +P+P+Q IP +L+GKDV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFSNLGLSDALLSAVAEKGYTQPSPIQAQAIPAVLDGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
RL+ P V ALV+TPTRELA Q+AE + G L LR VV GG+ + Q + L
Sbjct: 61 ERLSHGPKVRHNQVRALVLTPTRELAAQVAESVETYGKNLPLRSTVVFGGVKINPQMQRL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L +++ F + + LVLDEADR+LD+GF ++R + LP
Sbjct: 121 RGGVDVLVATPGRLLDLYQQNA---VRFDQLEILVLDEADRMLDMGFIHDIRKILAKLPP 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++ L + N+ + T E + Q I + K K L H+
Sbjct: 178 KRQNLMFSATFSPEIRALAKGLVNQPVEIDVSPRNTTTELVTQWIIPVDKKHKPALLAHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
++ + ++F T + L+ LE EA A+H KSQ+ R AL FKSG+
Sbjct: 238 INTHNWYQV---LVFSRTKHGANRLAKQLEAGGIEAAAIHGNKSQNARTRALADFKSGKL 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RGLDI + V+N D+P P DYVHR+GRT RAG G AVS V+ ++
Sbjct: 295 RALVATDIAARGLDIDQLPQVVNVDLPNLPEDYVHRIGRTGRAGASGQAVSLVSADESKQ 354
Query: 416 IHEIEAVVGKQLE 428
+ +IE ++ K+LE
Sbjct: 355 LKDIERLIQKKLE 367
>gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 542
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 218/380 (57%), Gaps = 11/380 (2%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+++++FA LGL ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FAL
Sbjct: 59 NTSMSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFAL 118
Query: 117 PILHRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
P+L RL + V + LV+ PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 119 PLLQRLVQHGPVVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQ 178
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF
Sbjct: 179 MMKLRKGVDVLVATPGR---LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFA 235
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQTLLFSAT T D++T+ T +KQ + + K K
Sbjct: 236 ALPVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDL 295
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
MH++++ A++FV T L+ +L+E +H K Q RL AL RFK
Sbjct: 296 FMHLVAENN---WDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFK 352
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V +
Sbjct: 353 TGEVQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCAD 412
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
+ + IEA++G+ L E
Sbjct: 413 EAPQLAAIEALIGQTLRREE 432
>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
D16]
gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
D16]
Length = 628
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 220/378 (58%), Gaps = 15/378 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LGL + KE G +P+P+Q IP L G+DVLG AQTG+GKT AFA PIL
Sbjct: 1 MTFEDLGLCPQILAALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60
Query: 120 HRLAEDP---YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
RL+ P + + AL++TPTRELA Q+ E F+ G L LRC V+ GG+ Q + L
Sbjct: 61 QRLSNKPASGHPIRALILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQVEKLG 120
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVF---SRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
+++ATPGR+ L ++ F + + VLDEADR+LD+GF +++ + + L
Sbjct: 121 KGVDILVATPGRLGDLYQQG------FIHLNDLEIFVLDEADRMLDMGFIHDVKKILKWL 174
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P+ +QTL FSATM ++ L+ + VE ++Q F+ + K L+
Sbjct: 175 PEKKQTLFFSATMPKEIAELVNSLLHHPARVAVDPVSSPVEAIRQSVYFVDRGNK-TKLL 233
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
+L M+ +G+++A++F T + ++ L + A A+H KSQ+ R AL FKSG
Sbjct: 234 SLL--MDQLGVKNALVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSG 291
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
L+ATD+A+RGLDI + V NY++P P YVHR+GRT RAG GG AV+F ++
Sbjct: 292 AIRCLVATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGHGGTAVAFCDFSEK 351
Query: 414 DLIHEIEAVVGKQLEEFE 431
L+ EIE ++G+ + E
Sbjct: 352 PLLKEIEKLIGRAIPVVE 369
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 169/458 (36%), Positives = 261/458 (56%), Gaps = 34/458 (7%)
Query: 43 LEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDV 100
+ F P+ S+ STV TF L L+ ++ +LG +P+P+Q+ IP L GKD+
Sbjct: 212 MASFYAPESESSEATSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDI 271
Query: 101 LGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALG---SG 154
+ A TGSGKTAAF +PI+ RL P V + +V+TPTRELA Q+A+ K +G SG
Sbjct: 272 IAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSG 331
Query: 155 LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF------ 208
L + VGG++L Q + L RP +VIATPGR I V + + F
Sbjct: 332 LTF--GLAVGGLNLRQQEQELKTRPDIVIATPGRF---------IDHVRNSSSFNVDSVE 380
Query: 209 -LVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267
LV+DEADR+L+ GF+EEL + LP RQTLLFSATM S +++L+ LS K
Sbjct: 381 VLVMDEADRMLEEGFQEELNEILTLLPSKRQTLLFSATMNSRIKSLISLSLRKPVRIMIN 440
Query: 268 EGFKTVETLKQQYIFIPK--NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE 325
+ L Q+++ I K ++K L +++ K++ G + ++FV+ H L ++L
Sbjct: 441 PPKQAAARLTQEFVRIRKRDHLKPALLFYLIRKLDGTGQKRIVVFVARKEMAHKLRIILG 500
Query: 326 ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP 385
L + LH +Q QRL +++ FKS + +L+ TD+ASRGLDIP +++V+N+D+P+
Sbjct: 501 LLGMKVGELHGSLTQEQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVINFDMPKSY 560
Query: 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDI--TR 443
Y+HRVGRTARAGR G +V+FV ++ D I K +EE K + V ++ T+
Sbjct: 561 EIYLHRVGRTARAGREGRSVTFVGESSQD--RSIVRSAIKSVEESSSKNKAVSRNVEWTQ 618
Query: 444 VYKARRVATM--KLMDDGFEEKAKERKKQKLKMLAEKG 479
+ + ++ + +DD E+ +E++ + +M KG
Sbjct: 619 IEETNKLVESFGETIDDILVEEKQEKEILRAEMQLRKG 656
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 215/370 (58%), Gaps = 10/370 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+ ++ +E G P+P+Q IP ++EGKDV+ AQTG+GKTA F LP+L R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 122 LAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L+ P V ALV+TPTRELA Q+ E + L L +VV GG+ + Q + L
Sbjct: 63 LSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRR 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF +++ + LPKNR
Sbjct: 123 GVDVLVATPGRLLDLANQNAI---KFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
Q LLFSAT + +++ L + + T ET++Q + K K L ++
Sbjct: 180 QNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLI- 238
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D + ++F T + L+ LEE A A+H KSQ R AL FKSGQ +
Sbjct: 239 --KDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RGLDI + V+N D+P+ P DYVHR+GRT RAG G A+SFV++++ +
Sbjct: 297 LVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELF 356
Query: 418 EIEAVVGKQL 427
IE ++ K L
Sbjct: 357 AIERLIQKVL 366
>gi|407927370|gb|EKG20264.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 363
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 217/340 (63%), Gaps = 8/340 (2%)
Query: 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGR 188
+ L++ PTRELAYQ+++QF+ALGS + ++C V+VGGMD+ Q +L PH+++ATPGR
Sbjct: 7 LFGLIMAPTRELAYQISQQFEALGSLIGVKCAVLVGGMDMTPQQIALGKNPHIIVATPGR 66
Query: 189 IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQTLLFSATMT 247
+ LE + K+LV+DEADR+LD+ F + + + LPK R+T LFSATM+
Sbjct: 67 LLDHLENTKGFS--LKQLKYLVMDEADRLLDLDFGPIIDKILKVLPKEGRRTYLFSATMS 124
Query: 248 SDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRS 306
S +++L S +N + +TV TL Q ++F+P KD+YL+H+L+ DM
Sbjct: 125 SKVESLQRASLSNPLRVSISSSSHQTVSTLIQHFLFVPHKHKDLYLIHLLN---DMIGHP 181
Query: 307 AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366
IIF T +++LL L A+ LH SQS RL AL +FK+ IL+ATDVA+R
Sbjct: 182 TIIFTRTVNETQRIAILLRALGFGAIPLHGQLSQSARLGALGKFKAKTRDILVATDVAAR 241
Query: 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ 426
GLDIP+V V+NYD+P + YVHRVGRTARAG+ G AVS VTQ DV++ IE +GK+
Sbjct: 242 GLDIPSVSYVINYDLPPDSKTYVHRVGRTARAGKSGKAVSIVTQYDVEIWLRIETALGKK 301
Query: 427 LEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKE 466
++E ++EV+ RV +A+R A ++ M D E + K+
Sbjct: 302 VDEEPVVKEEVMVLAERVGEAQR-AAIREMKDLHENRGKK 340
>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 479
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 209/364 (57%), Gaps = 11/364 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F GLGLA + T + G RPTP+Q IP ILEG+D++G+AQTG+GKTAAFALPILH
Sbjct: 4 FRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILHA 63
Query: 122 LAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L P G LV++PTRELA Q+AE F+ LG L VV GG+ Q K+L
Sbjct: 64 LITHPTPAPRGGARVLVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGAQIKALQ 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR L++ +T+F VLDE D++LD+GF + +R + LP
Sbjct: 124 RGLDILVATPGR---LVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTLPAK 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQ+L FSATM +++ L KT + ++QQ +F+ + K L+ +
Sbjct: 181 RQSLFFSATMPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVVFVETHRKRDILIELF 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
D + I+F T R ++ LE+ A A+H KSQSQR +L F+SG
Sbjct: 241 G---DAMMTRTIVFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSGHVR 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+ATD+A+RG+DI V V+NY++P P YVHR+GRTARAG G+A+S + D +
Sbjct: 298 ALVATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAISLCDGTERDYL 357
Query: 417 HEIE 420
IE
Sbjct: 358 RNIE 361
>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
Length = 441
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 229/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVGK-----QLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G +LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPRAELEGFEATHNVPITSMSHKTKAKKIDEVKII 400
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 215/370 (58%), Gaps = 10/370 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+ ++ +E G P+P+Q IP ++EGKDV+ AQTG+GKTA F LP+L R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 122 LAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L+ P V ALV+TPTRELA Q+ E + L L +VV GG+ + Q + L
Sbjct: 63 LSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRR 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF +++ + LPKNR
Sbjct: 123 GVDVLVATPGRLLDLANQNAI---KFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
Q LLFSAT + +++ L + + T ET++Q + K K L ++
Sbjct: 180 QNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLI- 238
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D + ++F T + L+ LEE A A+H KSQ R AL FKSGQ +
Sbjct: 239 --KDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RGLDI + V+N D+P+ P DYVHR+GRT RAG G A+SFV++++ +
Sbjct: 297 LVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELF 356
Query: 418 EIEAVVGKQL 427
IE ++ K L
Sbjct: 357 AIERLIQKVL 366
>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
Length = 432
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 216/374 (57%), Gaps = 12/374 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L+ ++ +E G P+P+Q IP +L GKDVLG AQTG+GKTAAFALPI+
Sbjct: 1 MTFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPII 60
Query: 120 HRLA------EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
L + +L++TPTRELA Q+AE FK GS +RC V+ GG+ + Q K
Sbjct: 61 QNLMRPSDKKHSKRVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIK 120
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L +++ATPGR+ L+ + +I S + VLDEADR+LD+GF +++ + L
Sbjct: 121 ELQRGIDILVATPGRLNDLIHQG-EIS--LSHVEMFVLDEADRMLDMGFIHDVKKIISLL 177
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P +QTLLFSATM ++Q L E + E V+ ++ ++ K K L+
Sbjct: 178 PVKKQTLLFSATMPPEIQALTEKLLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLV 237
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
H+L + I S ++F T ++ L + A A+H KSQ R AL +FK+G
Sbjct: 238 HLLKRE---AITSTLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAG 294
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L ATD+A+RG+DI + V+N+D+P P YVHR+GRT RAG GG A+SF +
Sbjct: 295 TVRVLAATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEK 354
Query: 414 DLIHEIEAVVGKQL 427
+ +IE ++GK++
Sbjct: 355 AYVEDIEKLIGKKI 368
>gi|387592705|gb|EIJ87729.1| hypothetical protein NEQG_02276 [Nematocida parisii ERTm3]
gi|387595334|gb|EIJ92959.1| hypothetical protein NEPG_02358 [Nematocida parisii ERTm1]
Length = 427
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/431 (33%), Positives = 240/431 (55%), Gaps = 11/431 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF+ L V+ + G+ PT +Q + + + +L ++ TG+GKT A++LPILH
Sbjct: 7 TFSSYSLDSSLVEELTKRGIIHPTEIQKLTLSNLENRQSLLAISNTGTGKTLAYSLPILH 66
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L D A++I PTREL+ Q+ +G+ + LR +++G +DLL Q KSL RPH
Sbjct: 67 SLLNDDRYFYAMIILPTRELSQQVHAVLSDIGAEIGLRTTLLIGAVDLLVQGKSLAARPH 126
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PKNRQT 239
++I TPGRI L I S K+LVLDE DR+LD F+ ++ + + + PK
Sbjct: 127 IIIGTPGRIYHHLRNTKGI--TLSSFKYLVLDECDRLLDNDFDGDINGILELISPK--YI 182
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSAT+T + N Y + E + QQY+++P+ K+VYL ++
Sbjct: 183 FLFSATLTKRVNAFKNKRMNNPLLYNVQKDEGIPENISQQYVYLPQKYKEVYLYSII--- 239
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+G R I+FV TC + + +L LD+ ++H KSQ R + F+ G+ ++L+
Sbjct: 240 RSLGSRKCIVFVKTCITAEKIERMLRSLDESVCSIHGNKSQEVRTETIEMFRRGRYSVLI 299
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
+TDV +RG+D+ + +++NYD+P ++Y+HR+GRT RAG G +++ VTQ DV+ ++
Sbjct: 300 STDVVARGMDMEGIKIIINYDMPDGHKEYIHRIGRTGRAGETGSSITLVTQYDVEEFRKL 359
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKG 479
E + +++E+ + S V A++ A + + ++G +K KE KK + + +
Sbjct: 360 EVKLDLKMDEYSISSDLIYSLSDSVDHAKKEAAVDMKEEGIGKKIKEVKKGRQGL---RT 416
Query: 480 SLKKRSEKRKK 490
S KK + K +K
Sbjct: 417 SNKKENRKNRK 427
>gi|340029625|ref|ZP_08665688.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus sp.
TRP]
Length = 481
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/384 (41%), Positives = 218/384 (56%), Gaps = 21/384 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F +G+ LG+ P+P+Q IP I+EG+D+LGLAQTG+GKTAAF LP+L R
Sbjct: 69 FTRMGIDPRVAINLSGLGIENPSPIQEKSIPAIVEGRDLLGLAQTGTGKTAAFGLPMLTR 128
Query: 122 LAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L +P AL++ PTRELA Q+AE G +R VVGG + Q + L
Sbjct: 129 LLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQYRVVGGASINVQVQRLE 188
Query: 177 NRPHVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V+IATPGR+ L++ D+ S+T++LVLDEAD++LD+GF LR + + LP+
Sbjct: 189 RGVDVLIATPGRLIDLIDRGAIDL----SQTRYLVLDEADQMLDIGFIHALRRIAKMLPR 244
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTLLFSATM ++ L + + E ++Q F+ + K L
Sbjct: 245 ERQTLLFSATMPKLMEELADSYLTDPVRVAVNPPGQAAEKIEQGVHFVNQGDKATLLAEY 304
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
LSK D AI+F T LS LLE+ + A+H KSQ QR AL F++G
Sbjct: 305 LSKHRD---ELAIVFGRTKHGSEKLSKLLEKWGFKVAAIHGNKSQGQRERALASFRAGDT 361
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVA+RGLDIP V V NYD+P P +YVHR+GRTARAGR G A++F + ++
Sbjct: 362 KVLVATDVAARGLDIPEVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPAEIGE 421
Query: 416 IHEIE-------AVVGKQLEEFEC 432
+ IE A+VG + E FE
Sbjct: 422 LRAIERAMKAKIAIVGGE-EPFEA 444
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 215/370 (58%), Gaps = 10/370 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+ ++ +E G P+P+Q IP ++EGKDV+ AQTG+GKTA F LP+L R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 122 LAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L+ P V ALV+TPTRELA Q+ E + L L +VV GG+ + Q + L
Sbjct: 63 LSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRR 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF +++ + LPKNR
Sbjct: 123 GVDVLVATPGRLLDLANQNAI---KFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
Q LLFSAT + +++ L + + T ET++Q + K K L ++
Sbjct: 180 QNLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLI- 238
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D + ++F T + L+ LEE A A+H KSQ R AL FKSGQ +
Sbjct: 239 --KDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RGLDI + V+N D+P+ P DYVHR+GRT RAG G A+SFV++++ +
Sbjct: 297 LVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELF 356
Query: 418 EIEAVVGKQL 427
IE ++ K L
Sbjct: 357 AIERLIQKVL 366
>gi|7022460|dbj|BAA91606.1| unnamed protein product [Homo sapiens]
Length = 257
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 178/256 (69%), Gaps = 6/256 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AE+F+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVST 313
+D S IIF +T
Sbjct: 242 FQDEHEDWSIIIFTNT 257
>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
Length = 442
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR LL+ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGR---LLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSHKTKAKKIDEVKII 400
>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 486
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 226/401 (56%), Gaps = 16/401 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + P + V ALV+ PTRELA Q+A Q LR VV GG+D+
Sbjct: 62 LQRLLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTLELKKGVEVLVATPGR---LLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L ++ E T T++Q++ + K
Sbjct: 179 SYLPKERTTLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYSANDDDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL G++ A IFV++ C L+ LE ALH +SQ +RL AL F
Sbjct: 239 AIHQVL---RTRGLKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLAV+ V+
Sbjct: 296 KSGDVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSG 355
Query: 411 NDVDLIHEIEAVVGKQ--LEEFECKEQEVLSDITRVYKARR 449
+D L+ +IE ++GK+ LE E E I +A R
Sbjct: 356 SDARLVADIEKLIGKKTDLEAIEYDEDRPRGRINDGRRAWR 396
>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 809
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 230/412 (55%), Gaps = 23/412 (5%)
Query: 24 KPEPQPEPEPESKNAKTTQL--------EKFTNPDPNSTTTDSTVT---FAGLGLAEWAV 72
KP P +P+P++K TQL E+ + T D+T + F L L+ +
Sbjct: 135 KPAPSTKPKPQTK----TQLPEDDGVFTEREKKNKKGAATEDATFSAESFNDLNLSRQLI 190
Query: 73 QTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL----HRLAEDPYG 128
+ C LG PTP+Q +P L G+D+ G A TGSGKTAAF LP+L HR A
Sbjct: 191 RACTALGYDVPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPLLERMLHRGARAAAA 250
Query: 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGR 188
LV+ PTRELA Q+ + L +R +VVGG+ TQA L RP +V+ATPGR
Sbjct: 251 THVLVLVPTRELAVQVHQMTMRLAQFTSIRAALVVGGLSANTQAAELRTRPEIVVATPGR 310
Query: 189 IKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMT 247
L++ + V LVLDEADR+L++GF EE+R + + P RQT+LFSAT+T
Sbjct: 311 ---LIDHVRNTHSVGLEDLAALVLDEADRLLEMGFLEEIREIVRHCPTRRQTMLFSATLT 367
Query: 248 SDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSA 307
S +Q L E S A + T TL ++ + + + H+++ + + +
Sbjct: 368 SGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASMKEAHLMALVNRTFTKKS 427
Query: 308 IIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367
I+F T + H L +++ A LH SQ+QRL+AL F+ G+A+ L+ATDVA+RG
Sbjct: 428 IVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAALESFRVGEASHLVATDVAARG 487
Query: 368 LDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
LDI VD V++YD PR Y+HRVGRTARAG+ G A++F+ ++D L+ +
Sbjct: 488 LDIAGVDAVISYDAPRTLASYLHRVGRTARAGKRGTALTFMEESDRKLVKAV 539
>gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
Length = 437
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 211/364 (57%), Gaps = 11/364 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F +GL V+ +GM PTP+Q IP + G+DV+GLAQTG+GKTAAF +P++ +
Sbjct: 4 FEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVAQ 63
Query: 122 LAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ E +P V LV+ PTRELA Q+ E K G L+ +VVGG + Q K L
Sbjct: 64 MLEMEARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQIKRLE 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ L++ + +T FLVLDEAD++LD+GF +LR + LPK
Sbjct: 124 RGVDLLVATPGRLLDLMDRRAVL---LHKTTFLVLDEADQMLDMGFIHDLRKIASVLPKE 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT+LFSATM + + N E K + + Q+ FI K K L+ +L
Sbjct: 181 RQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKKALLIELL 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+K + A++F T C L L + +A ++H KSQ QR A+ FK G T
Sbjct: 241 AKHTE---ERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDIT 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RGLDIP V V NY++P P +YVHR+GRTARAG+ G A++F +++ +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357
Query: 417 HEIE 420
+I+
Sbjct: 358 KDIQ 361
>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
Length = 441
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 228/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+ DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K+M
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSHKNKAKKIDEVKIM 400
>gi|358639136|dbj|BAL26433.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 517
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 215/381 (56%), Gaps = 12/381 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V+FA LGLAE ++ E G RPTP+Q IP +L G D+L AQTG+GKTA F LP+L
Sbjct: 6 VSFASLGLAEPLLRAISESGYTRPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPLL 65
Query: 120 HRLAEDPYGV------LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
H L+ P V L++TPTRELA Q+ E + G L L V+ GG+++ Q
Sbjct: 66 HLLSAKPAAVPKAGRPRCLILTPTRELAAQVEESVQTYGKHLPLTSMVMFGGVNINPQIA 125
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
+L R +++ATPGR LL+ S + LVLDEADR+LD+GF ++R V L
Sbjct: 126 ALKKRVDILVATPGR---LLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLAML 182
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
PK RQ LLFSAT + ++++L N E T E ++Q F+P+ K L+
Sbjct: 183 PKQRQNLLFSATFSDEIRSLANGLLNNPGCVEVARRNTTTELVEQSVYFVPQKQKRDLLV 242
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
H++ + + ++F T + L+ L + A A+H KSQS R AL +FK
Sbjct: 243 HLVKEHD---WHQVLVFTRTKHGANRLAEYLGKHGIPAAAIHGNKSQSARTKALSQFKDN 299
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+ATD+A+RGLDI + V+N+++P P DYVHR+GRT RAG G A+SFV +
Sbjct: 300 SLPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGKAISFVDSEEK 359
Query: 414 DLIHEIEAVVGKQLEEFECKE 434
+ IE ++ + +E E
Sbjct: 360 SYLTSIERLIKRSIERTPVPE 380
>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 489
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 245/419 (58%), Gaps = 16/419 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+E ++ K+ G P+P+Q IP +L G+DV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAE-DP---YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
HRL+ +P V ALV+TPTRELA Q+AE G L L+ VV GG+++ Q ++
Sbjct: 61 HRLSRGNPARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAM 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L+ ++ F + + L+LDEADR+LD+GF ++R + LPK
Sbjct: 121 RKGADVLVATPGRLLDLVSQNALH---FRQLEVLILDEADRMLDMGFIRDIRKIINMLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+RQTL+FSAT + +++TL + N+ + T ET+KQ + K K L H+
Sbjct: 178 DRQTLMFSATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRKPALLCHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + + ++F+ T + L LE +A A+H KSQ R AL FK G
Sbjct: 238 I---KHNNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DI + V+NY++P DYVHR+GRT RAG G A+S V+ ++ L
Sbjct: 295 RVLVATDIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPL 354
Query: 416 IHEIEAVVGKQL--EEFEC-KEQEVLSDITRVYKARRV---ATMKLMDDGFEEKAKERK 468
+ ++E ++ + L EEF+ K Q ++ T R V K+ DDG ++ ++++
Sbjct: 355 LVDVEKLIKQILPREEFDGFKPQNPVAMTTEAQLTRPVKKPKKPKMFDDGRSQEPRQQR 413
>gi|429770137|ref|ZP_19302216.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429185399|gb|EKY26379.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 491
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 224/392 (57%), Gaps = 11/392 (2%)
Query: 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124
+GL + + G +PTP+Q IP +++GKD+LG+AQTG+GKTAAFALPILHRLAE
Sbjct: 1 MGLNKALLTALASTGYEKPTPIQAKSIPDVMKGKDLLGIAQTGTGKTAAFALPILHRLAE 60
Query: 125 D-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ P AL+++PTRELA Q+A+ FK G+ L R VV GG+ Q ++L
Sbjct: 61 NRVAPKPRTTRALILSPTRELATQIADSFKQYGAHLGFRVAVVFGGVKYGPQERALQQGL 120
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
V++A PGR LL+ S T+ VLDEAD++LD+GF + +R + +P RQ
Sbjct: 121 DVLVAAPGR---LLDHIQQKTLDLSSTEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQN 177
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
L FSATM S++ L + TVE +KQ I++ + K L + S
Sbjct: 178 LFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALLTELFSAP 237
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
++F T ++ LE EA A+H KSQ QR AL FK+G+ +L+
Sbjct: 238 ---AYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLV 294
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATD+A+RG+D+ V V+N+++P P YVHR+GRTARAG+ G A+SFV +++ L+ +I
Sbjct: 295 ATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMKLLKDI 354
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
E V +++ + + + L+ + A VA
Sbjct: 355 EKVTRQKIPAIDRRNDKSLAQLDASIMAAGVA 386
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 216/370 (58%), Gaps = 10/370 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ +Q +E G ++P+P+Q IP +LEGKDV+ AQTG+GKTAAF LPIL
Sbjct: 1 MSFKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPIL 60
Query: 120 HRLAED----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
V AL++TPTRELA Q+ E ++ G L+L+ +VV GG+ + Q L
Sbjct: 61 SMFENTTPAAANNVKALILTPTRELAAQIDENIRSYGKHLNLKTQVVFGGVGINPQMIKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L ++ FS+ + LVLDEADR+LD+GF +++ + LPK
Sbjct: 121 RRGVDILVATPGRLMDLYQQRA---VKFSQLEILVLDEADRMLDMGFIHDIKKIMAILPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT + D++ L + N T ++Q I + K K+ L H+
Sbjct: 178 KRQNLLFSATFSDDIRKLAKTIVNNPVEISVNTKNSTATAVEQVIIPVDKTNKNTLLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ +E+ ++F T L+ L + + A A+H KSQ R AL FKSG+
Sbjct: 238 I--IEN-NWHQVLVFCRTKHGADRLAKFLIKKNISASAIHGNKSQGARTRALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL ATD+A+RG+DI + ++N+D+P P DYVHR+GRT RAG G A SF T D
Sbjct: 295 QILAATDIAARGIDINELPQIVNFDLPNIPEDYVHRIGRTGRAGATGHAYSFATIEDKKN 354
Query: 416 IHEIEAVVGK 425
I +I++++GK
Sbjct: 355 ISDIQSLIGK 364
>gi|347818470|ref|ZP_08871904.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 486
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 215/378 (56%), Gaps = 14/378 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F+ L LAE + E+G TP+Q IP +L G+DV+G AQTG+GKTAAF+LP+
Sbjct: 2 TSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLSGQDVMGAAQTGTGKTAAFSLPL 61
Query: 119 LHRLAEDPYG--------VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L RL + G V ALV+ PTRELA Q+A Q LR VV GGMD+
Sbjct: 62 LQRLLKHESGSASPARHPVRALVLLPTRELADQVARQIALYAKHTRLRSTVVFGGMDMKP 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ +
Sbjct: 122 QTIELKKGVEVLVATPGR---LLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRIL 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK R TLLFSAT + +++ L + E +T T++Q++ K
Sbjct: 179 SYLPKQRTTLLFSATFSPEIRRLAGSYLDNPVTIEVARPNETAATVEQRFYSANDEDKRR 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
+ VL G+ A IFV++ C L+ LE ALH KSQ +RL AL F
Sbjct: 239 AIHQVL---RTHGLTQAFIFVNSKLGCARLARSLEREGLRTTALHGDKSQDERLKALEAF 295
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
KSG +L+ TDVA+RGLDI V V N+D+P DYVHR+GRT RAG GLA + V+
Sbjct: 296 KSGAVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAFTLVSA 355
Query: 411 NDVDLIHEIEAVVGKQLE 428
+D L+ +IE ++ K+++
Sbjct: 356 SDARLVADIEQLIKKKID 373
>gi|374262391|ref|ZP_09620958.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
gi|363537177|gb|EHL30604.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
Length = 418
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 214/381 (56%), Gaps = 10/381 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL E ++ E G P+P+Q IP IL G D+L AQTG+GKTA+F LPIL
Sbjct: 1 MSFTSLGLIEPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPIL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
RL P L++TPTRELA Q+ E + G L LR VV GG+ + Q L
Sbjct: 61 QRLHNQPRAKSNHTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L ++ FS LVLDEADR+LD+GF +++ + LPK
Sbjct: 121 RGGVEILVATPGRLMDLYQQRAI---QFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT + ++TL + NK + T +KQ + KN K L H+
Sbjct: 178 ERQNLLFSATFSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNRKHALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K G ++F T + L L E A A+H KSQSQR L FKSG+
Sbjct: 238 IHK-NKWG--QTLVFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGEL 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATD+A+RG+DI + V+NYD+P+ DYVHR+GRT RAG G A+S V ++V
Sbjct: 295 HILVATDIAARGIDIDQLPCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLVCADEVGQ 354
Query: 416 IHEIEAVVGKQLEEFECKEQE 436
+ IE ++ ++LE E ++ E
Sbjct: 355 LQAIEKLIKRKLERIEIEDFE 375
>gi|108761880|ref|YP_632259.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
1622]
Length = 501
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 216/380 (56%), Gaps = 17/380 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L + ++ K G PTP+Q IP L G+DVLG+AQTG+GKTAAFALPIL
Sbjct: 1 MTFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPIL 60
Query: 120 HRL-AEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL A+ P G V LV+TPTRELA Q+ + F G GL LR V+ GG+ Q ++
Sbjct: 61 QRLSAKAPAGGARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQT 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL---VLDEADRVLDVGFEEELRVVFQ 231
L N V++ATPGR+ L+E+ F + L VLDEADR+LD+GF ++R V +
Sbjct: 121 LRNGVDVLVATPGRLLDLMEQG------FVSLRSLEVFVLDEADRMLDMGFIHDVRRVIK 174
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQTL FSAT+ D+ L E T ET+ QQ F+ + K
Sbjct: 175 ALPPKRQTLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGL 234
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L H+L ++ I A++F T + ++ LE + A+H KSQ+ R AL F+
Sbjct: 235 LTHLL---KEGNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFR 291
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG +L+ATD+A+RG+DI + V+NYD+P P YVHR+GRT RAG G AVSF
Sbjct: 292 SGTLRVLVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAE 351
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
+ + +IE + + + E
Sbjct: 352 ERAYLRDIERTIRRNVPVVE 371
>gi|404448789|ref|ZP_11013781.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403765513|gb|EJZ26391.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 398
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 220/369 (59%), Gaps = 11/369 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+ F L L E ++ + G PTP+Q IP +L+G D+LG AQTG+GKTAAF++PI+
Sbjct: 1 MAFNNLPLIEPILKAVAQEGYTTPTPIQQKAIPLVLDGNDLLGCAQTGTGKTAAFSIPII 60
Query: 120 HRLA---EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L+ + G+ AL++TPTRELA Q+ E + G +R V+ GG+ L Q +L
Sbjct: 61 QLLSTQKQSRPGIKALILTPTRELAIQINESLASYGKFTKIRHTVIFGGVSQLHQTNALK 120
Query: 177 NRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L+ + D+ + VLDEADR+LD+GF +++ + +P
Sbjct: 121 RGVDILVATPGRLLDLINQKYIDL----RHLEIFVLDEADRMLDMGFIHDVKKLINIIPT 176
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQTL FSATM S++Q L + + E TVE + Q+ F KN K L+H+
Sbjct: 177 KRQTLFFSATMPSEIQKLADTLLKNPKYVEVTPPSSTVEKITQKLYFTNKNDKAKLLIHL 236
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K E++G SA++F T + LL+ +A A+H KSQ+ R +AL+ FK+G+
Sbjct: 237 LEK-ENIG--SALVFGRTKHGSDKVVKLLQREGIKAAAIHGNKSQNARQNALNDFKNGKI 293
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATD+A+RG+DI + V NYD+P P YVHR+GRT RAG G+A+SF Q+ +
Sbjct: 294 RILVATDIAARGIDIDELATVFNYDLPNIPETYVHRIGRTGRAGNSGVAISFADQDTMKE 353
Query: 416 IHEIEAVVG 424
+IE ++G
Sbjct: 354 YRDIEKLIG 362
>gi|407067967|ref|ZP_11098805.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 538
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/393 (38%), Positives = 224/393 (56%), Gaps = 13/393 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+E ++ + G +P+P+Q +P +L GKDV+ AQTG+GKTA F LPIL
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 120 HRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ P V ALV+TPTRELA Q+ G L L VV GG+ + Q + L
Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAV---RFDQLEILVLDEADRMLDMGFIRDIRKILAFLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT + D+++L + N T +T++Q + K K L +
Sbjct: 178 KRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSAMLAKL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ +D R ++F T + L+ LEE D A +H KSQ R AL FK+G+
Sbjct: 238 I---KDNDWRQVLVFSKTKHGANKLARFLEEQDITAAPIHGNKSQGARTKALENFKTGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DIP + V+N+D+P DYVHR+GRT RAG G A+S V ++V
Sbjct: 295 RVLVATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGE 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ + LE +E E S + ++ ++R
Sbjct: 355 LFGIERLIQQVLER---RELEGFSPVNKLPESR 384
>gi|397665932|ref|YP_006507469.1| RNA helicase [Legionella pneumophila subsp. pneumophila]
gi|395129343|emb|CCD07573.1| RNA helicase [Legionella pneumophila subsp. pneumophila]
Length = 414
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/393 (39%), Positives = 225/393 (57%), Gaps = 10/393 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L L E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPIL
Sbjct: 1 MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFILPIL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+ ++ V L++TPTRELA Q+ E G L LR V+ GG+ +Q K L
Sbjct: 61 QKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHSQIKQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 DSGLEILVATPGRLLDLYQQRA---VKFDEINTLVLDEADRMLDMGFIHDIKKIIKLLPL 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT T +++ L NKA + V+T+KQ + +N K L H+
Sbjct: 178 KRQNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++F T + L L E +VA+H KSQ+QR AL FKSG+
Sbjct: 238 LHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++ L
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPNVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ ++LE K+ E L + + + A+
Sbjct: 355 LLSIEKLINQKLERITIKDFEFLHNFSDLVSAK 387
>gi|410637091|ref|ZP_11347679.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410143470|dbj|GAC14884.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 412
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/377 (39%), Positives = 215/377 (57%), Gaps = 10/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF LGL + E G PTP+Q IP IL+ +DV+ AQTG+GKTA F LPIL
Sbjct: 1 MTFNSLGLGQNIANALIEKGYNEPTPIQAQAIPAILDNQDVMAAAQTGTGKTAGFVLPIL 60
Query: 120 HRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+L+ P V ALV+TPTRELA Q++E KA L++R VV GG+ + Q +L
Sbjct: 61 EKLSHHPRPKGNQVNALVLTPTRELAAQISENVKAYSKNLNIRHTVVFGGVSINPQMMAL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L + F + LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 RKGVDILVATPGRLLDLYNQKA---VKFDNLQILVLDEADRMLDMGFIHDIKRIIKLLPN 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
+RQ LLFSAT ++ ++ L + N KT + ++Q + K+ K L H+
Sbjct: 178 SRQNLLFSATFSTQIRELAKSIVNNPVEISVAPANKTADKVEQCIHPVDKSKKSGLLTHI 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K ++M ++F T + L+ L + A+H KSQ R AL FKS
Sbjct: 238 I-KQQNMD--QVLVFSRTKHGANRLAKQLTARGIVSAAIHGNKSQGARTKALAEFKSSAI 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+NYD+P DYVHR+GRT RAG G A+S VT D+ L
Sbjct: 295 QVLVATDIAARGLDIHQLPFVINYDLPHVAEDYVHRIGRTGRAGATGHAISLVTAEDIKL 354
Query: 416 IHEIEAVVGKQLEEFEC 432
+ +IE V+G+++ E
Sbjct: 355 LKDIERVIGEKIPRIEV 371
>gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium
HTCC2083]
gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium
HTCC2083]
Length = 450
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 210/364 (57%), Gaps = 11/364 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F +GL+E V KELG+ PTP+Q IP+ L G DVLGLAQTG+GKTAAF LP++
Sbjct: 7 FETMGLSERLVARLKELGLTTPTPIQARAIPEALNGHDVLGLAQTGTGKTAAFGLPLITL 66
Query: 122 LAEDP-----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L+E+P V AL++ PTRELA Q+ E K G ++ +VVGG + Q+K L
Sbjct: 67 LSENPGRPSPKTVRALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQSKRLE 126
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ L++ + FLVLDEAD++LD+GF LR + LP+
Sbjct: 127 KGIDILVATPGRLIDLMDRRA---LTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPEQ 183
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT+LFSATM + + + K + + Q FI K K L+ +L
Sbjct: 184 RQTMLFSATMPKLMNEIANTYLKSPKRIQVSPPGKAADKVTQVVHFIAKTEKQSLLIELL 243
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+D A++F T C L L A ++H KSQ QR AL FK+G+
Sbjct: 244 GAHKD---ERALVFGRTKHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMK 300
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RGLDIP V V NY++P P YVHR+GRTARAG+ G A++F +++DL+
Sbjct: 301 VLVATDVAARGLDIPDVRHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEMDLL 360
Query: 417 HEIE 420
+IE
Sbjct: 361 KDIE 364
>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
Length = 446
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 219/368 (59%), Gaps = 10/368 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL+E ++ + G P+P+Q IP +LEG+DV+ AQTG+GKTA F LP+L
Sbjct: 10 MSFSTLGLSESLLKAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 69
Query: 120 HRLAED----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
H L++ V ALV+TPTRELA Q+AE G L+LR VV GG+ + Q L
Sbjct: 70 HGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 129
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
++IATPGR+ L +++ F + + L+LDEADR+LD+GF ++R + + LPK
Sbjct: 130 RKGVDILIATPGRLLDLYQQNA---MSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPK 186
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + D++ L + N T ++ Q + KN K L+ +
Sbjct: 187 KRQNLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVEL 246
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+++ ++F T R + L+ LE+ D +A A+H KSQ R AL FKSG+
Sbjct: 247 INQHN---WEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKL 303
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N D+P +DYVHR+GRT RAG G A+S V+ ++ L
Sbjct: 304 RVLVATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQL 363
Query: 416 IHEIEAVV 423
+ +IE ++
Sbjct: 364 LQDIERLI 371
>gi|340776541|ref|ZP_08696484.1| ATP-dependent RNA helicase [Acetobacter aceti NBRC 14818]
Length = 431
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 215/375 (57%), Gaps = 12/375 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
++TF L L+ ++ E G +PTP+Q IP +LEG+D+LG+AQTG+GKTA+F LP+
Sbjct: 2 SITFEDLALSPALLRALGEEGYVKPTPIQAQSIPLLLEGRDLLGMAQTGTGKTASFVLPL 61
Query: 119 LHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
LHRLAE P G LV+ PTREL Q+A+ F++ G L R + GG+ Q
Sbjct: 62 LHRLAETPRPAPKGGARVLVLAPTRELVSQIADGFESFGRHLDFRVTTIFGGVSQFHQVN 121
Query: 174 SLMNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
+L V++A PGR+ L+E+ D+ S + +VLDEAD++LD+GF + + +
Sbjct: 122 ALKEGVDVIVAAPGRLLDLIEQGLCDL----SELEAVVLDEADQMLDMGFAKPIERIVAT 177
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
LPK+R T+LFSATM + L++ N E TV+ ++Q +F+ K L
Sbjct: 178 LPKDRHTVLFSATMPKSIAALVDSLLNDPAKVEIAPPSTTVDRIEQSVMFMDAAHKKTAL 237
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+ L + DMG A++F + + L E A ALH KSQ QR AL F++
Sbjct: 238 LAQLQQTPDMG--QAVVFTLQKNIANEVCAFLTEAGITAEALHGNKSQGQRERALEAFRA 295
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G +L+ATD+A+RG+D+ TV V N+D+P P YVHR+GRT RAGR G A++
Sbjct: 296 GDVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGYAITLCDAEQ 355
Query: 413 VDLIHEIEAVVGKQL 427
+H +E +G+ L
Sbjct: 356 RAWLHNVEREIGRAL 370
>gi|339444742|ref|YP_004710746.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
gi|338904494|dbj|BAK44345.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
Length = 504
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+E +Q LG PTPVQ IP LEG+D++ A+TG+GKTAAF+LP L R
Sbjct: 4 FNELGLSEHVLQAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 63
Query: 122 L--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ A+ G L LV+TPTRELA Q+ E A+ H R VVGG+ Q L +
Sbjct: 64 VGHAKGGQGPLMLVVTPTRELAQQIGEVCSAIAVSTHHRILTVVGGLSYEPQISKLKHGV 123
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
++IATPGR+ L+E+ + LVLDEADR+LD+GF ++ + P RQT
Sbjct: 124 DILIATPGRLVDLMEQGA---VRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPSTRQT 180
Query: 240 LLFSATMTSDLQ-TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
LLFSAT+ + ++ ++ +L N A+ A++G +T +T++Q I +N+K L +L+
Sbjct: 181 LLFSATIDASIKNSVGKLLHNPAFVEIAHKG-ETADTVEQYIIHTQQNLKPDLLKALLA- 238
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ G I+F T L+ A A+HS +SQ+QR AL F SG+ ++
Sbjct: 239 --EKGSERVIVFARTRSRADSTCRRLKRAGFTAEAIHSDRSQNQRRRALDNFASGRVGVI 296
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDV +RG+D+ VD V+NYD+P P DYVHR+GRT RAG G AVSFV+ D + +
Sbjct: 297 VATDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETNDALRD 356
Query: 419 IEAVVGKQLEEFE 431
IE ++ + + E E
Sbjct: 357 IEKLIKRPIPEME 369
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 165/424 (38%), Positives = 234/424 (55%), Gaps = 12/424 (2%)
Query: 23 SKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTV----TFAGLGLAEWAVQTCKEL 78
++P+ Q E E A + E FT P P +T D +F L L+ ++ C+ L
Sbjct: 130 AEPDKQEEYLSEDDGAAEYKPEDFT-PKPFFSTVDGVSFHADSFMELNLSRPLLRACETL 188
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVIT 135
G ++PTP+Q CIP L G+D+ A TGSGKTAAFALP L RL P V A L++T
Sbjct: 189 GYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILT 248
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELA Q+ + L ++C ++VGG+ + Q L + P +V+ATPGR+ L
Sbjct: 249 PTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRN 308
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
+ L+LDEADR+L GF E+ + + PK RQT+LFSATMT +++ L++
Sbjct: 309 SMSVD--LDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 366
Query: 256 LSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRS-AIIFVSTC 314
LS NK A + L ++ + I + ++ VL + +S IIF T
Sbjct: 367 LSLNKPLRLSADPSARRPPGLTEEVVRI-RRTREANQEAVLLSLCTRTFKSKVIIFSGTK 425
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
++ H L +L +A LH +Q+QRL +L F+ + L+ATDVA+RGLDI V
Sbjct: 426 QAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQ 485
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
V+NY PR YVHRVGRTARAGR G AV+FVT +D L+ I VG +L+ E
Sbjct: 486 TVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPE 545
Query: 435 QEVL 438
Q ++
Sbjct: 546 QSIV 549
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 217/380 (57%), Gaps = 17/380 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L + ++ K G PTP+Q IP L G+DVLG+AQTG+GKTAAFALPIL
Sbjct: 1 MTFDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPIL 60
Query: 120 HRL-AEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL A+ P G V LV+TPTRELA Q+ + F+ G GL LR V+ GG+ Q ++
Sbjct: 61 QRLSAKAPAGGARPVRCLVLTPTRELAGQVGDSFQTYGKGLPLRHAVIFGGVGQNPQVQA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL---VLDEADRVLDVGFEEELRVVFQ 231
L N V++ATPGR+ L+E+ F + L VLDEADR+LD+GF ++R V +
Sbjct: 121 LRNGVDVLVATPGRLLDLMEQG------FVSLRSLEVFVLDEADRMLDMGFIHDVRRVIK 174
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQTL FSAT+ D+ L E T ET+ QQ F+ + K
Sbjct: 175 ALPPKRQTLFFSATLPPDIVDLARSILTDPIRVEVSPASSTAETVSQQVYFVEREQKRGL 234
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L H+L ++ I A++F T + ++ LE + A+H KSQ+ R AL F+
Sbjct: 235 LTHLL---KEGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFR 291
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG +L+ATD+A+RG+DI + V+NYD+P P YVHR+GRT RAG G AVSF
Sbjct: 292 SGTLRVLVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAE 351
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
+ + +IE + + + E
Sbjct: 352 ERAYLRDIERTIRRNVPVVE 371
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 221/382 (57%), Gaps = 14/382 (3%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S V FA GL+ ++ + G PTP+Q IP +L+G+DV+G AQTG+GKTA FALP
Sbjct: 63 SQVRFADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALP 122
Query: 118 ILHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
I+ L + P + V AL++TPTRELA Q+AE KA LR VV GGMD+
Sbjct: 123 IIQMLLAHASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQHTPLRSTVVFGGMDMK 182
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q L +VIATPGR+ +E+ +I + + LV+DEADR+LD+GF +L+ +
Sbjct: 183 GQTVILKAGVEIVIATPGRLLDHVEQK-NIS--LGQVQMLVMDEADRMLDMGFLPDLQRI 239
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LP RQ L+FSAT + +++ L E +T + + Q +P+N K
Sbjct: 240 INLLPAKRQNLMFSATFSPEIKKLANTFLTNPVTIEVARSNQTADKVTQVVYKVPENQKH 299
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
H+L + E ++ IIF +T L+ LE+ +AVA+H K+Q +R++AL
Sbjct: 300 ALTAHLLRQRE---LKQVIIFSNTKIGASRLAKGLEQEGMKAVAIHGDKTQQERMAALES 356
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK G+ IL+ATDVA+RGLDI + V+NYD+P DYVHR+GRT RAG G A+S +
Sbjct: 357 FKKGEIDILVATDVAARGLDITDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDALSIYS 416
Query: 410 QNDVDLIHEIEAVVGKQLEEFE 431
D L+ +IE ++ + + E
Sbjct: 417 DKDERLLADIEKLIKQTIRRGE 438
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 230/399 (57%), Gaps = 17/399 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+E +++ +G TP+Q IP LEGKDV+G AQTG+GKTAAF +P++
Sbjct: 3 TFKELGLSEPLIKSVLNMGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGIPLIQ 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
++AE + +V+TPTRELA Q+AE+ +G +R + GG ++ Q ++L RPH
Sbjct: 63 KIAETSEDIQGIVLTPTRELAVQVAEELNKIGQFKGIRTLPIYGGQEIDRQIRALKKRPH 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR L++ ++LDEAD +L++GF E++ + Q +P+ RQTL
Sbjct: 123 IIVATPGR---LMDHMRRRTIRLQNINMVILDEADEMLNMGFVEDIETILQEIPEARQTL 179
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATM +Q L + TV ++Q Y+ +P+ +K VL ++
Sbjct: 180 LFSATMPRQIQNLAQKFMKDPELISIKGKEVTVANIEQDYLEVPEKMK----FDVLCRLL 235
Query: 301 DMGIRS---AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
D I+S AI+F T LS L + A +H SQS+R S + +FK G +
Sbjct: 236 D--IQSPDLAIVFGRTKSRVDELSEALNKRGYSAEGIHGDLSQSKRDSVMRQFKEGSIEV 293
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDI V V N+DIP+ P YVHR+GRT RAG+ GLAV+FVT ++ +
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPREIGHLR 353
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE QL + + + + + I + +RVA K++
Sbjct: 354 LIE-----QLTKRKITRKNIPTMIEAIEVQQRVAIEKML 387
>gi|374336577|ref|YP_005093264.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372986264|gb|AEY02514.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
Length = 458
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 157/383 (40%), Positives = 223/383 (58%), Gaps = 21/383 (5%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + VQ E G +PTP+Q IP +L+G D+L AQTG+GKTA F LP+L
Sbjct: 1 MSFASLGLNDNLVQAIHECGYTQPTPIQQQAIPLVLKGGDLLAGAQTGTGKTAGFGLPML 60
Query: 120 HRLAED---PYG-----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
RL+E P V ALV+TPTRELA Q+ E +A LR V+ GG+ + Q
Sbjct: 61 QRLSETKARPLANGRAPVRALVLTPTRELAAQVEENLRAYAKHTDLRTLVMFGGVSINPQ 120
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
K+L + +V+ATPGR LL+ SR + LVLDEADR+LD+GF ++R +
Sbjct: 121 MKALGRKVDIVVATPGR---LLDHVSQRSIDLSRVEMLVLDEADRMLDMGFIRDIRRILA 177
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LPK RQ LLFSAT + +++TL E ++ E T ET+ Q++ + K K
Sbjct: 178 LLPKQRQNLLFSATFSDEIKTLAEDLLHQPEHIEVARRNATAETISQRFFEVDKGRKRAL 237
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE---AVALHSFKSQSQRLSALH 348
L + + R ++F R+ H + L E+LD++ A+A+H KSQ R AL
Sbjct: 238 LSYHIGHHN---WRQVLVF---TRTKHGANRLAEQLDKDGLPAMAIHGNKSQGARTKALS 291
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FKSG +L+ATD+A+RG+DI + V+NY++P DYVHR+GRT RAG G A+S V
Sbjct: 292 EFKSGGIRVLVATDIAARGIDISELPHVVNYELPNVAEDYVHRIGRTGRAGSNGEALSLV 351
Query: 409 TQNDVDLIHEIEAVVGKQLEEFE 431
+ + L+ IE ++ KQ + E
Sbjct: 352 SAEEKPLLKAIEKLI-KQSADLE 373
>gi|307200753|gb|EFN80820.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
Length = 334
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 202/310 (65%), Gaps = 5/310 (1%)
Query: 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220
V+VGGMD+ QA L +PH++IATPGR+ LE KFLV+ EADR+L++
Sbjct: 1 VLVGGMDMSAQALLLSKKPHIIIATPGRLVDHLENTKGFS--LRNLKFLVMGEADRILNM 58
Query: 221 GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQY 280
FE E+ + + +P+ R+TLLFSATMT +Q L S E ++TVE L+Q Y
Sbjct: 59 DFEIEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYY 118
Query: 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
IFIP KDVYL+H+L+++ S +IF +TC + +LLL L AV LH SQ
Sbjct: 119 IFIPVKFKDVYLVHILNELAG---NSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQ 175
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
++R++AL +FK+ +IL++TDVASR LDIP VD+V+N+DIP + +DY+HRVGRTARAGR
Sbjct: 176 NKRIAALTKFKARNRSILISTDVASRSLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGR 235
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGF 460
G +++FVTQ DV+L IE ++ KQL + +E EV+ RV +A+R+ M++ D
Sbjct: 236 SGRSITFVTQYDVELYQRIEQLISKQLPLWPTEEGEVMLLQERVTEAQRIVKMEVKDIEE 295
Query: 461 EEKAKERKKQ 470
+K +RKK+
Sbjct: 296 NKKLGKRKKR 305
>gi|339492846|ref|YP_004713139.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800218|gb|AEJ04050.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 441
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 222/376 (59%), Gaps = 17/376 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++T + L R+PTPVQ IP +L+G+D++ AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V ALV+ PTRELA Q+ E F+ G L LR V GG+ + Q +
Sbjct: 61 QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EEL +F LP
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNA---VGFAQLQALVLDEADRMLDLGFAEELDALFSALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQTLLFSAT + ++ + E +T+KQ + + K K +H
Sbjct: 178 KKRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA---LHSFKSQSQRLSALHRFK 351
+L++ ++FV T + L++EL + +A +H K Q+ RL AL RFK
Sbjct: 238 LLAERR---WGQVLVFVKTRKGV---DQLVDELQAQGIASDAIHGDKPQASRLRALERFK 291
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G A+S V +
Sbjct: 292 AGEVQVLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVAAD 351
Query: 412 DVDLIHEIEAVVGKQL 427
+VD + IE ++ + L
Sbjct: 352 EVDQLAAIETLINQVL 367
>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
Length = 446
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 218/368 (59%), Gaps = 10/368 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL+E ++ + G P+P+Q IP +LEG+DV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
H L++ V ALV+TPTRELA Q+AE G L+LR VV GG+ + Q L
Sbjct: 61 HGLSKGQSAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
++IATPGR+ L +++ F + + L+LDEADR+LD+GF ++R + + LP
Sbjct: 121 RKGVDILIATPGRLLDLYQQNA---MSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPN 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + D++ L + N T ++ Q + KN K L+ +
Sbjct: 178 KRQNLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVEL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+++ ++F T R + L+ LE+ D +A A+H KSQ R AL FKSG+
Sbjct: 238 INQHN---WEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKL 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N D+P +DYVHR+GRT RAG G A+S V+ ++ L
Sbjct: 295 RVLVATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQL 354
Query: 416 IHEIEAVV 423
+ +IE ++
Sbjct: 355 LQDIERLI 362
>gi|399072166|ref|ZP_10750181.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398042783|gb|EJL35752.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 494
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 220/389 (56%), Gaps = 13/389 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T + F L LA+ ++ + G PTP+Q IP ++ G+D+LG+AQTG+GKTAAFA
Sbjct: 10 TRNLTQFTDLALAKPLLKALTDKGYTTPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFA 69
Query: 116 LPILHRLAEDP-----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
LPILHRLAED G LV++PTRELA Q+A+ F+ G + L + GG+
Sbjct: 70 LPILHRLAEDKKPAPRRGFRCLVLSPTRELATQIADSFRDYGKHMGLTVATIFGGVKYGP 129
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q K+L VV+ATPGR+ L E + + VLDEAD++LD+GF +R +
Sbjct: 130 QMKALAAGVDVVVATPGRLMDHLGEKS---AHLNGVEIFVLDEADQMLDLGFVVPIRKIA 186
Query: 231 QCLPKNRQTLLFSATMTSDLQTLL-ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LPK RQ L FSATM S++ L EL N A TVE + Q IFI K
Sbjct: 187 SQLPKERQNLFFSATMPSEIGKLAGELLKNPAQV-AITPSATTVERIDQSLIFIEAQRKR 245
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L +L+ D + +I+F T R ++ L EA A+H K+Q QR AL
Sbjct: 246 PLLAELLA---DKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAA 302
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK+GQ L+ATD+A+RG+D+ V V N+++P P YVHR+GRTAR G+ G+A+SF
Sbjct: 303 FKAGQVKALIATDIAARGIDVNDVSHVFNFELPNVPESYVHRIGRTARKGKEGVAISFCA 362
Query: 410 QNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
++ +L+ +I+ + + F+ + + L
Sbjct: 363 DDERNLLRDIQKATRQTIPTFDRRNDKTL 391
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 227/374 (60%), Gaps = 12/374 (3%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
TT S F L L+ + C++LG PTP+Q IP L G+DV G AQTGSGKTAAF
Sbjct: 205 TTFSAQCFNDLHLSRPLCRACEKLGYATPTPIQAAIIPIALTGRDVCGRAQTGSGKTAAF 264
Query: 115 ALPILHRLAEDPYGVLA----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
ALP+L R+ P ++ +++ PTRELA Q A+ + LG +++ +VGG+ +
Sbjct: 265 ALPLLERMLHRPKNAVSAIHVVIMVPTRELAVQCAQMIQRLGEYTNVQVATIVGGLSMER 324
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
QA +L RP +V+ATPGR+ + F +VLDEADR+L++GF EE++ +
Sbjct: 325 QAAALRQRPEIVVATPGRLIDHVRNTHSFG--FEDVAAVVLDEADRLLEMGFLEEIKEIV 382
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFI-PKNV-- 287
+ +P+ RQTLLFSAT+TS ++ L LS A T TL ++ + I P+ V
Sbjct: 383 RNMPRQRQTLLFSATLTSAVEELASLSMRNPARLSADSLGTTPMTLTEEIVKIKPQFVAK 442
Query: 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
K+ +L+ +LS+ + I+F T H L ++L + +A LH +Q+QRL+AL
Sbjct: 443 KEAHLLSLLSR--SFKGKETIVFAKTKVQAHRLKIVLGLSNIKACELHGDMTQTQRLAAL 500
Query: 348 HRFKSGQAT-ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
F+S T I++ATDVA+RGLDI +VDLV++YD P+ Y+HRVGRTARAGR G+A++
Sbjct: 501 EDFRSNAETKIMVATDVAARGLDIASVDLVVSYDAPKNVASYLHRVGRTARAGRKGVAIT 560
Query: 407 FVTQNDVDLIHEIE 420
F+ + D L+ ++
Sbjct: 561 FMEEYDRALVKTLQ 574
>gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
Length = 444
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 215/370 (58%), Gaps = 12/370 (3%)
Query: 57 DSTVT-FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
D T++ F +GL V+ +GM PTP+Q IP + G+DV+GLAQTG+GKTAAF
Sbjct: 9 DKTMSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFG 68
Query: 116 LPILHRLAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
+P++ ++ E +P V LV+ PTRELA Q+ E K G L+ ++VGG +
Sbjct: 69 IPLVAQMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINP 128
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q K + +++ATPGR+ L++ + +T FLVLDEAD++LD+GF +LR +
Sbjct: 129 QIKRMERGVDLLVATPGRLLDLMDRRAVL---LHKTTFLVLDEADQMLDMGFIHDLRKIA 185
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK RQT+LFSATM + + N E K + + Q+ FI K K
Sbjct: 186 AVLPKERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKS 245
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L+ +L K + A++F T C L L + +A ++H KSQ QR A+ F
Sbjct: 246 LLIELLGKHTE---ERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESF 302
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G+ T+L+ATDVA+RGLDIP V V NY++P P +YVHR+GRTARAG+ G A++F
Sbjct: 303 KKGEVTVLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAP 362
Query: 411 NDVDLIHEIE 420
+++ + +I+
Sbjct: 363 DEMGELKDIQ 372
>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
Langeland]
gi|384461069|ref|YP_005673664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
230613]
gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
Langeland]
gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
230613]
Length = 425
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 222/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+AE F+ G ++L+ V+ GG+ Q K L
Sbjct: 63 LSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTKVL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KVRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLINKEI 368
>gi|386019450|ref|YP_005937474.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 441
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 222/376 (59%), Gaps = 17/376 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++T + L R+PTPVQ IP +L+G+D++ AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V ALV+ PTRELA Q+ E F+ G L LR V GG+ + Q +
Sbjct: 61 QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EEL +F LP
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNA---VGFAQLQALVLDEADRMLDLGFAEELDALFSALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQTLLFSAT + ++ + E +T+KQ + + K K +H
Sbjct: 178 KKRQTLLFSATFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA---LHSFKSQSQRLSALHRFK 351
+L++ ++FV T + L++EL + +A +H K Q+ RL AL RFK
Sbjct: 238 LLAERR---WGQVLVFVKTRKGV---DQLVDELQAQGIASDAIHGDKPQASRLRALERFK 291
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G A+S V +
Sbjct: 292 AGEVQVLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVAAD 351
Query: 412 DVDLIHEIEAVVGKQL 427
+VD + IE ++ + L
Sbjct: 352 EVDQLAAIETLINQVL 367
>gi|347735337|ref|ZP_08868231.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
gi|346921472|gb|EGY02178.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
Length = 387
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 215/365 (58%), Gaps = 12/365 (3%)
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGV-----LA 131
+LG TP+Q IP LEG+D+LG+AQTG+GKTAAF LPIL RL P + A
Sbjct: 19 QLGHHTATPIQARAIPHALEGRDILGIAQTGTGKTAAFTLPILQRLGAAPSALPLRMPRA 78
Query: 132 LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKV 191
L++TPTRELA Q+ E G GL L V++GG+ +Q K+L N +++ATPGR+
Sbjct: 79 LILTPTRELAVQIGESITNYGVGLKLSHTVILGGVGQGSQVKALANGIDILVATPGRLLD 138
Query: 192 LLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQ 251
L+ + + + LVLDEADR+LD+GF LR + LP NRQTL FSATM +D+
Sbjct: 139 LMTQGH---VRLDKVEVLVLDEADRMLDMGFIHSLRKIMAKLPANRQTLFFSATMPADVS 195
Query: 252 TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFV 311
L E T E ++Q+ IF+P K L+ ++ D G++ +I+F
Sbjct: 196 ELAGKMLRDPLRVEVTPVSTTAERIEQKVIFVPAAEKRHVLVDLIRG--DAGMQRSIVFT 253
Query: 312 STCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP 371
T + +S LE+ EA A+H KSQ+ R AL F++G +L+ATD+A+RG+D+
Sbjct: 254 RTKHGANRVSAQLEQAGIEAAAIHGNKSQNARQKALDGFRAGTVRVLVATDIAARGIDVD 313
Query: 372 TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH--EIEAVVGKQLEE 429
V V+N+++P P YVHR+GRTARAG G+AVS T + + I+ +IE ++ K +
Sbjct: 314 GVTHVVNFELPNEPETYVHRIGRTARAGASGVAVSLCTADGDERIYLRDIEKLIRKSIPV 373
Query: 430 FECKE 434
E E
Sbjct: 374 GERPE 378
>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase [Burkholderia vietnamiensis G4]
gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 483
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 215/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++T ++L + PTPVQ + IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++ + T +KQ + + K K MH
Sbjct: 178 ARRQTLLFSATFTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPVDKRNKPELFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ + A++FV T L+ +L+E +H K Q RL AL RFK+
Sbjct: 238 LVAENK---WEHALVFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARD 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + +V+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPMVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++GK L E
Sbjct: 355 QLAAIEALIGKTLRREE 371
>gi|452877593|ref|ZP_21954868.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
gi|452185681|gb|EME12699.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
Length = 447
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 220/377 (58%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++ + LG+ PTP+Q IP L+G+D+L AQTG+GKTAAFALP+L
Sbjct: 1 MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL 60
Query: 120 HRLA-EDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL E P V ALV+ PTRELA Q+ + G L LR V GG+ + Q
Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F+R + LVLDEADR+LD+GF EL +F LP
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAV---QFARLQALVLDEADRMLDLGFARELDELFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT + ++TL E ++++Q + + K K H
Sbjct: 178 RKRQTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L R A++F T +S L LL+ A ++H K Q RL AL RFK+G+
Sbjct: 238 LLQANR---WRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N+D+P DYVHR+GRT RAG G A+S V ++V+
Sbjct: 295 VDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVE 354
Query: 415 LIHEIEAVVGKQLEEFE 431
L+ IE ++G+ L+ E
Sbjct: 355 LLAAIETLIGQTLQRRE 371
>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 447
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 220/377 (58%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++ + LG+ PTP+Q IP L+G+D+L AQTG+GKTAAFALP+L
Sbjct: 1 MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL 60
Query: 120 HRLA-EDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL E P V ALV+ PTRELA Q+ + G L LR V GG+ + Q
Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F+R + LVLDEADR+LD+GF EL +F LP
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAV---QFARLQALVLDEADRMLDLGFARELDELFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT + ++TL E ++++Q + + K K H
Sbjct: 178 RKRQTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L R A++F T +S L LL+ A ++H K Q RL AL RFK+G+
Sbjct: 238 LLQANR---WRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N+D+P DYVHR+GRT RAG G A+S V ++V+
Sbjct: 295 VDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVE 354
Query: 415 LIHEIEAVVGKQLEEFE 431
L+ IE ++G+ L+ E
Sbjct: 355 LLAAIETLIGQTLQRRE 371
>gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
Length = 447
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 217/382 (56%), Gaps = 11/382 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA + KE G+ PTP+QT IP + G+DV+GLAQTG+GKTAAF LP++H
Sbjct: 4 FDMLGLAPRLIAVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMIHA 63
Query: 122 LAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L + +P V LV+ PTRELA Q+A+ A G HL+ +VVGG + Q K L
Sbjct: 64 LMKAGVKPNPKAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQTKRLA 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ LL+ T +LVLDEAD++LD+GF LR + L K+
Sbjct: 124 GGVDLLVATPGRLIDLLDRRA---VRLDETVYLVLDEADQMLDMGFIHALRRIAPLLAKD 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT++FSATM + L + A + + V+ + Q F+ + K L+ +L
Sbjct: 181 RQTMMFSATMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVDLL 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K D A++F T C L LE A ++H KSQ QR A+ FK+G+
Sbjct: 241 DKHRD---ELALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVR 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RG+DIP V V NYD+P +YVHR+GRTARAG G A++ V +++ +
Sbjct: 298 VLVATDVAARGIDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGSAIALVAPDEMIEL 357
Query: 417 HEIEAVVGKQLEEFECKEQEVL 438
+IE + + + + E++
Sbjct: 358 QDIEKAMKETIPVASGRPWEIM 379
>gi|381166173|ref|ZP_09875390.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Phaeospirillum molischianum DSM 120]
gi|380684620|emb|CCG40202.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Phaeospirillum molischianum DSM 120]
Length = 432
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 217/367 (59%), Gaps = 11/367 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGLAE ++ G PTP+Q IP +L G DVLGLAQTG+GKTA+FALP+L R
Sbjct: 4 FSDLGLAEPLLKALATEGYTSPTPIQEQSIPHLLAGHDVLGLAQTGTGKTASFALPLLQR 63
Query: 122 LAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L + P LV+TPTRELA Q+ + F+ GS LR +V GG+ ++ Q K++
Sbjct: 64 LEQFKKRAMPKSTRVLVLTPTRELAVQVGQSFRTYGSQYRLRHALVFGGVGMVPQIKTMA 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ L+ +D + LVLDEADR+LD+GF + +R + +PK+
Sbjct: 124 GGVDILVATPGRLLDLMSQDAI---RLDSVEALVLDEADRMLDMGFIQPIRKIVAAMPKS 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT+LFSATM + L E ++ E T E + Q+ +F+ + K L +L
Sbjct: 181 RQTVLFSATMPDSIVGLAESVLHRPVRVEVAPVSSTAEKIDQKVMFVDRENKRTLLTEIL 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ +D+G A++F T + ++ +L++ A A+H KSQ R AL F+ G+
Sbjct: 241 AG-KDVG--RALVFTRTKHGANRVAEMLDKAGISADAIHGNKSQGARQKALADFRDGKIK 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+ATD+A+RG+D+ + VLNY++P P YVHR+GRTARAG G+AVS ++V +
Sbjct: 298 ALVATDIAARGIDVDGITHVLNYELPNEPESYVHRIGRTARAGASGIAVSLCDADEVAYL 357
Query: 417 HEIEAVV 423
IE +
Sbjct: 358 RAIEKTI 364
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 220/378 (58%), Gaps = 10/378 (2%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T D +++F LGL+ ++ E G P+P+Q IP +L+G+DV+ AQTG+GKTA F
Sbjct: 7 TRDLSMSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGF 66
Query: 115 ALPILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
LP+L L++ V LV+TPTRELA Q+AE + G L LR VV GG+ +
Sbjct: 67 TLPLLELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINP 126
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L + V++ATPGR+ L + F++ + LVLDEADR+LD+GF ++R +
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKA---VKFNQLEILVLDEADRMLDMGFIRDIRKIL 183
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK RQ L+FSAT + +++ L + N T+KQ + K K
Sbjct: 184 AILPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSA 243
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L ++ K D + ++F T + L+ LEE +A A+H KSQ+ R AL F
Sbjct: 244 LLTQLI-KQHDW--QQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADF 300
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+GQ +L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+
Sbjct: 301 KNGQVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSS 360
Query: 411 NDVDLIHEIEAVVGKQLE 428
++ L+++IE ++ + L+
Sbjct: 361 EEIKLLNDIERLINRILD 378
>gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
Length = 414
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/393 (39%), Positives = 223/393 (56%), Gaps = 10/393 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F L L E + ELG PT +Q IP IL G D+LG AQTG+GKTA+F LPIL
Sbjct: 1 MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+ ++ L++TPTRELA Q E G L LR V+ GG+ Q K L
Sbjct: 61 QKASQQTQTSRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQIKQL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ +++ATPGR+ L ++ F LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 DSGLEILVATPGRLLDLYQQGA---VKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT T +++TL NKA + V+T+KQ + N K L H+
Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNHKLALLSHL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L K + G ++F T + L L E +VA+H KSQ+QR AL FKSG+
Sbjct: 238 LHK-NNWG--QTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG GLAVS V+ ++ L
Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354
Query: 416 IHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
+ IE ++ ++LE + K+ E L + + + A+
Sbjct: 355 LLSIEKLINQKLERIKIKDFEFLHNFSDLVSAK 387
>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 481
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 215/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F A G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT + D++ + T +KQ + + K K MH
Sbjct: 178 AQRQTLLFSATFSDDIRAMAATILRGPVNISVSPPNATASKIKQWVVTVDKRNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ + A++FV T L+ +L+E +H K Q RL AL RFK+G+
Sbjct: 238 LVAENK---WEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIKQTLRREE 371
>gi|372487003|ref|YP_005026568.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359353556|gb|AEV24727.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 443
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 213/377 (56%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA L L ++ LG + PTPVQ IP +L G D++ AQTG+GKTA+FALP+L
Sbjct: 1 MTFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLL 60
Query: 120 HRLAEDP-----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RLA DP AL++ PTRELA Q+ + F A G L LR V GG+ + Q
Sbjct: 61 QRLAHDPEPTASNSTRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +++ATPGR+ L ++ F + + LVLDEADR+LD+GF EL +F LP
Sbjct: 121 LRKGVDILVATPGRLLDLHRQNA---VRFDQVRTLVLDEADRMLDLGFARELNALFALLP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQTLLFSAT + ++++ + K E T +KQ + + K K H
Sbjct: 178 KQRQTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+ + ++FV T + L L A ++H K Q RL AL FK+GQ
Sbjct: 238 LYKHKK---WDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQ 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVASRGLDI + V+N+D+P P DYVHR+GRTARAG G AVS V ++V+
Sbjct: 295 VRVLVATDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVN 354
Query: 415 LIHEIEAVVGKQLEEFE 431
L+ IE ++G+ L E
Sbjct: 355 LLGAIEVLIGQPLSRIE 371
>gi|344940973|ref|ZP_08780261.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 419
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/373 (38%), Positives = 221/373 (59%), Gaps = 12/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++ ++ + G P+P+Q+ IP +L G DVL AQTG+GKTA F LPILHR
Sbjct: 3 FTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLH--LRCEVVVGGMDLLTQAKSL 175
L++ YG V L++TPTRELA Q+ E G+ LH L+ EVV GG+ + Q L
Sbjct: 63 LSQKAYGNNRPVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L+ ++ + + L+LDEADR+LD+GF ++R + LPK
Sbjct: 123 RGGVDILVATPGRLLDLVNQNA---VKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT + D++ L E E ++Q + K K L H+
Sbjct: 180 KRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHL 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + + + ++F +T + L+ L ++D +A A+H KSQ R SAL FK+G+
Sbjct: 240 IKEHD---WQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEI 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVA+RG+DI + V+N+++PR P DYVHR+GRT RAG G A+S V+ ++
Sbjct: 297 RVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSF 356
Query: 416 IHEIEAVVGKQLE 428
+ +E ++GK+++
Sbjct: 357 LRLVEKLIGKEIK 369
>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 434
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 217/371 (58%), Gaps = 10/371 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ L L + + + G + P+P+Q IP IL G+DV+ AQTG+GKTA F+LPIL R
Sbjct: 3 FSKLDLIQPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPILQR 62
Query: 122 LAE----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L+E L++TPTRELA Q+ + + + LHL VV GG+ + Q L
Sbjct: 63 LSEGKRPSANSARCLILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKLRR 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V++ATPGR+ L+E++ F+ +FLVLDEADR+LD+GF ++ + LPK R
Sbjct: 123 GTDVLVATPGRLLDLMEQNA---VRFNDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKKR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTLLFSAT + ++ + + E + T T+KQ + K K L +++
Sbjct: 180 QTLLFSATFSESIKAISQQFLTNPSLVETEQTNTTAATVKQWIHPVDKKQKPALLSYLIG 239
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++FV T R + LS+ LE+ +A A+H KSQ R AL FKSG+ T+
Sbjct: 240 HHR---WDQLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDI + LV+NYD+P DYVHR+GRT RAG G A+S V+ ++VD +
Sbjct: 297 LVATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLR 356
Query: 418 EIEAVVGKQLE 428
I+ ++ K LE
Sbjct: 357 AIQDLIRKPLE 367
>gi|294868682|ref|XP_002765642.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239865721|gb|EEQ98359.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 367
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 191/300 (63%), Gaps = 5/300 (1%)
Query: 131 ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK 190
A V+ PTREL Q +QF+ LG+ ++L +VGG+D++TQA SL +PH+++A+PGR+
Sbjct: 32 ACVLAPTRELCVQTGQQFEGLGASINLTTATIVGGLDMVTQAMSLSKKPHIIVASPGRLV 91
Query: 191 VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDL 250
LE KFLV+DEADR+L + FE+ L + Q P++RQT LFSATMT+ +
Sbjct: 92 DHLENTKGFH--LKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQTFLFSATMTNKV 149
Query: 251 QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIF 310
L S + E F + L Q Y+F+P K YL +L+ + + + +IF
Sbjct: 150 SQLQRASLTRPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALLAHFK---LSTVMIF 206
Query: 311 VSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370
V TC + ++ L L V LH +Q+ RL AL++F++G +IL+ATDVA+RGLDI
Sbjct: 207 VDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSILVATDVAARGLDI 266
Query: 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430
P+VD+V+N+D+P+ P +Y+HRVGRTARAGR G +V+ VTQ D++ IE GK++EEF
Sbjct: 267 PSVDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENKQGKKMEEF 326
>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 481
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 213/377 (56%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNMRDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 61 QRLGQQGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSVNPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++ L T ++Q + + K K MH
Sbjct: 178 AERQTLLFSATFTDDIRALAAGILRGPVDISVSPPNATASKIRQWVVPVDKRNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ A++FV T L+ +L+E +H K Q R+ AL RFK+G+
Sbjct: 238 LVAQNN---WEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VNMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLRREE 371
>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
Maree]
gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
Maree]
Length = 425
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/373 (38%), Positives = 222/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+G+D++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+ E F+ G ++L+ V+ GG+ Q K+L
Sbjct: 63 LSKDKKVNKDPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KARQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLINKEI 368
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 221/380 (58%), Gaps = 14/380 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA GLA + + G PTP+Q IP +L+G+DV+G AQTG+GKTA F+LPI+
Sbjct: 37 LTFADFGLAPEIQRALTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 96
Query: 120 HRLAEDP--------YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
L + V AL++TPTRELA Q+AE KA LR VV GGMD+ Q
Sbjct: 97 QLLMAHASSSMSPARHPVRALILTPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQ 156
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L +VIATPGR+ +E+ +I S+ + LV+DEADR+LD+GF +L+ +
Sbjct: 157 TVLLRGGVEIVIATPGRLLDHIEQK-NI--SLSQVQMLVMDEADRMLDMGFLPDLQRIIN 213
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LPK RQ L+FSAT + +++ L N E +T + + Q + ++ K
Sbjct: 214 LLPKQRQNLMFSATFSPEIKKLAATFLNDPLTIEVARSNQTADKVTQVVYKVSEDQKHAL 273
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
+ H+L + + ++ I+F +T L+ +LE+ A A+H KSQ +R++AL FK
Sbjct: 274 VAHLLRQRD---LKQVIVFSNTKIGASRLARVLEQEGMSATAIHGDKSQQERMAALEAFK 330
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
G+ +L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G A+S +
Sbjct: 331 KGEIDVLVATDVAARGLDISDLPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISIYSDK 390
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
D L+ +IE ++ + ++ E
Sbjct: 391 DERLLADIEKLIKQSIKRGE 410
>gi|387904228|ref|YP_006334566.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387579120|gb|AFJ87835.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 483
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 214/377 (56%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++T ++L + PTPVQ + IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT T D++ + T +KQ + + K K MH
Sbjct: 178 ARRQTLLFSATFTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPVDKRNKPELFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ + A++FV T L+ +L+E +H K Q RL AL RFK
Sbjct: 238 LVAENK---WEHALVFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKGRD 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + +V+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPMVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++GK L E
Sbjct: 355 QLAAIEALIGKTLRREE 371
>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
3502]
gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
19397]
gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
str. ATCC 3502]
gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
19397]
gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
Length = 425
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/373 (38%), Positives = 222/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+G+D++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+ E F+ G ++L+ V+ GG+ Q K+L
Sbjct: 63 LSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KARQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLINKEI 368
>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|422938927|ref|YP_007012074.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|407294078|gb|AFT92984.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
Length = 441
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 228/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+ DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSHKNKAKKIDEVKII 400
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 155/391 (39%), Positives = 220/391 (56%), Gaps = 7/391 (1%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P+ + +F L L+ ++ C+ LG +PTP+Q CIP L G+D+ G A TGSGK
Sbjct: 126 PSDGASFHANSFMELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGK 185
Query: 111 TAAFALPILHRLAEDP---YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
TAAF+LP L RL P + L++TP RELA Q+ + L +RC ++VGG+
Sbjct: 186 TAAFSLPTLERLLYRPKRDRAIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLIVGGLS 245
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
Q +L + P VV+ATPGR+ L + L+LDEADR+L++GF E+R
Sbjct: 246 RKEQEAALRSMPDVVVATPGRMIDHLRNSMSVD--LDDLAVLILDEADRLLELGFSAEIR 303
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287
+ + PK RQT+LFSATMT ++ L++LS K A K +TL ++ + + + +
Sbjct: 304 ELVRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLRLSADPATKRPKTLTEEVVRL-RRM 362
Query: 288 KDVYLMHVLSKMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
++V VL + S I+F T ++ H L +L +A LH +Q QRL A
Sbjct: 363 REVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDA 422
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L F+ Q L+ATDVA+RGLDI V+ V+N+ PR YVHRVGRTARAGR G AV+
Sbjct: 423 LELFRKQQVDFLIATDVAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYAVT 482
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437
FVT ND L+ I G +L+ EQ +
Sbjct: 483 FVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 513
>gi|392422527|ref|YP_006459131.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
gi|390984715|gb|AFM34708.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
Length = 441
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 222/377 (58%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++T + L R+PTPVQ IP +L+G+D++ AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V ALV+ PTRELA Q+ E F+ G L LR V GG+ + Q +
Sbjct: 61 QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F++ + LVLDEADR+LD+GF +EL +F LP
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNA---VGFNQLQALVLDEADRMLDLGFADELDQLFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQTLLFSAT + ++ + E +T+KQ + + K K +H
Sbjct: 178 KKRQTLLFSATFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L+ D ++FV T + L L+ + A+H K Q+ RL AL RFK+G+
Sbjct: 238 LLA---DKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G AVS V+ ++VD
Sbjct: 295 VQVLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVD 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IE ++ + L+ +
Sbjct: 355 QLAAIETLINQVLQRHD 371
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/391 (39%), Positives = 220/391 (56%), Gaps = 7/391 (1%)
Query: 51 PNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGK 110
P+ + +F L L+ ++ C+ LG +PTP+Q CIP L G+D+ G A TGSGK
Sbjct: 126 PSDGASFHANSFMELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGK 185
Query: 111 TAAFALPILHRLAEDP---YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
TAAF+LP L RL P + L++TP RELA Q+ + L +RC ++VGG+
Sbjct: 186 TAAFSLPTLERLLYRPKRDRAIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLIVGGLS 245
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
Q +L + P VV+ATPGR+ L + L+LDEADR+L++GF E+R
Sbjct: 246 RKEQEAALRSMPDVVVATPGRMIDHLRNSMSVD--LDDLAVLILDEADRLLELGFSAEIR 303
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287
+ + PK RQT+LFSATMT ++ L++LS K A K +TL ++ + + + +
Sbjct: 304 ELVRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLRLSADPATKRPKTLTEEVVRL-RRM 362
Query: 288 KDVYLMHVLSKMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
++V VL + S I+F T ++ H L +L +A LH +Q QRL A
Sbjct: 363 REVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDA 422
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L F+ Q L+ATDVA+RGLDI V+ V+N+ PR YVHRVGRTARAGR G AV+
Sbjct: 423 LELFRKQQVDFLIATDVAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYAVT 482
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437
FVT ND L+ I G +L+ EQ +
Sbjct: 483 FVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 513
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 217/376 (57%), Gaps = 12/376 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+ ++ +E G P+P+Q IP +LEGKDV+ AQTG+GKTA F LPIL R
Sbjct: 3 FTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILER 62
Query: 122 LAED----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L+E P + AL++TPTRELA Q+ E L LR VV GG+ + Q +L
Sbjct: 63 LSEGSRTRPNHIRALILTPTRELAAQIHENAVVYSRHLRLRSSVVFGGVKINPQMMNLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+++ATPGR+ L +++ FS+ + LVLDEADR+LD+GF +++ + LPKNR
Sbjct: 123 GTDILVATPGRLLDLYQQNA---VKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
Q LLFSAT + +++ L + N T T+ +Q+I+ K ++ L
Sbjct: 180 QNLLFSATFSDEIRDLAKGLVNNPVEISVTPANSTARTV-EQWIYPADKKKKPAMLAKL- 237
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + LS L + A +H KSQS R AL FKSG +
Sbjct: 238 -IKDGDWKQVLVFTRTKHGANKLSHFLNDEGITAAPIHGNKSQSARTKALADFKSGDVRV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DIP + V+N++IP DYVHR+GRT RAG G AVS V ++ D +
Sbjct: 297 LVATDIAARGIDIPQLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAVSLVCADEADDLF 356
Query: 418 EIEAVVGKQL--EEFE 431
IE ++ + L EE E
Sbjct: 357 GIERLIQQLLRREELE 372
>gi|387824537|ref|YP_005824008.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
Length = 445
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 234/419 (55%), Gaps = 15/419 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R VV GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---LKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT + +++ L N A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS + +
Sbjct: 237 LIKDQDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
IE ++G ++LE FE ++ ++R KA+++ +K++ K + QK
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSRKTKAKKIDEVKIIAAKRANKNNKSTNQK 415
>gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
Length = 433
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 211/364 (57%), Gaps = 11/364 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F +GL V+ +GM PTP+Q IP + G+DV+GLAQTG+GKTAAF +P++ +
Sbjct: 4 FEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPLVAQ 63
Query: 122 LAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ E +P V LV+ PTRELA Q+ E K G L+ ++VGG + Q K +
Sbjct: 64 MLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRME 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ L++ + +T FLVLDEAD++LD+GF +LR + LPK
Sbjct: 124 RGVDLLVATPGRLLDLMDRRAVL---LHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKE 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT+LFSATM + + N E K + + Q+ FI K K L+ +L
Sbjct: 181 RQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELL 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K + A++F T C L L + +A ++H KSQ QR A+ FK G+ T
Sbjct: 241 GKHTE---ERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVT 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RGLDIP V V NY++P P +YVHR+GRTARAG+ G A++F +++ +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357
Query: 417 HEIE 420
+I+
Sbjct: 358 KDIQ 361
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 217/380 (57%), Gaps = 14/380 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V F GL+ ++ E G PTP+Q IP +L+G+DV+G AQTG+GKTA F+LPI+
Sbjct: 16 VRFEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 75
Query: 120 HRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
RL + P + V AL++TPTRELA Q+AE KA LR VV GG+D+ Q
Sbjct: 76 QRLLAHASHSASPARHPVRALILTPTRELADQVAENVKAYSRFTPLRSTVVFGGVDMAPQ 135
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
+L +VIATPGR LL+ S+T+ LV+DEADR+LD+GF +L+ +
Sbjct: 136 TATLRAGVEIVIATPGR---LLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIIN 192
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LPK RQ LLFSAT + +++ L N E T E + Q + + K
Sbjct: 193 LLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVSQTIYKVEEAAKADA 252
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
+ ++ + E ++ I+F +T L+ L +A A+H K+QS+R++AL FK
Sbjct: 253 VSFIIRQRE---LKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALESFK 309
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
GQ +L+ATDVA+RGLDI + V+NYD+P DYVHR+GRT RAG G A+S
Sbjct: 310 QGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDK 369
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
D L+ +IE ++ K+ E E
Sbjct: 370 DERLLVDIEKLIKKKFERAE 389
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 220/378 (58%), Gaps = 10/378 (2%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
T D +++F LGL+ ++ E G P+P+Q IP +L+G+DV+ AQTG+GKTA F
Sbjct: 7 TRDLSMSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGF 66
Query: 115 ALPILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
LP+L L++ V LV+TPTRELA Q+AE + G L LR VV GG+ +
Sbjct: 67 TLPLLELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINP 126
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L + V++ATPGR+ L + F++ + LVLDEADR+LD+GF ++R +
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKA---VKFNQLEILVLDEADRMLDMGFIRDIRKIL 183
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
LPK RQ L+FSAT + +++ L + N T+KQ + K K
Sbjct: 184 AILPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAA 243
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L ++ K D + ++F T + L+ LEE +A A+H KSQ+ R AL F
Sbjct: 244 LLTQLI-KQHDW--QQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADF 300
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+GQ +L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+
Sbjct: 301 KNGQVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSS 360
Query: 411 NDVDLIHEIEAVVGKQLE 428
++ L+++IE ++ + L+
Sbjct: 361 EEIKLLNDIERLINRILD 378
>gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase [Paracoccus denitrificans PD1222]
gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
PD1222]
Length = 479
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 217/385 (56%), Gaps = 21/385 (5%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
F +G+ LG+ P+P+Q IP I+ G+D+LGLAQTG+GKTAAF LP+L
Sbjct: 68 AFTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPMLT 127
Query: 121 RLAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
RL +P AL++ PTRELA Q+AE G +R VVGG + Q + L
Sbjct: 128 RLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRL 187
Query: 176 MNRPHVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
V+IATPGR+ L+E D+ S+T++LVLDEAD++LD+GF LR + + LP
Sbjct: 188 ERGVDVLIATPGRLIDLIERGAIDL----SQTRYLVLDEADQMLDIGFIHALRRIAKMLP 243
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSATM ++ L + N + E + Q F+ + K L
Sbjct: 244 RERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAE 303
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
LSK D AI+F T L LL++ + A+H KSQ QR AL F++G+
Sbjct: 304 YLSKHVD---ELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGE 360
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDIP V V NYD+P P +YVHR+GRTARAGR G A++F + ++
Sbjct: 361 TKVLVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIG 420
Query: 415 LIHEIE-------AVVGKQLEEFEC 432
+ IE AVVG + E FE
Sbjct: 421 ELRAIEKAMKAKIAVVGGE-EPFEA 444
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 215/378 (56%), Gaps = 13/378 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ K G PTP+Q IP L GKDVLG+AQTG+GKTAAFALPIL
Sbjct: 1 MTFDELQLQETLLRAVKAEGYTTPTPIQQKAIPHALAGKDVLGVAQTGTGKTAAFALPIL 60
Query: 120 HRL-AEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL A+ P G V LV+TPTRELA Q+ E F G L LR V+ GG+ Q ++
Sbjct: 61 QRLSAKAPPGGARPVRCLVLTPTRELAGQVGESFATYGKNLPLRHTVIFGGVGQNPQVQA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCL 233
L V++ATPGR+ L+E+ V R+ + VLDEADR+LD+GF ++R V + L
Sbjct: 121 LQRGVDVLVATPGRLLDLMEQGC----VSLRSLEVFVLDEADRMLDMGFIHDVRRVIKAL 176
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
P RQTL FSAT+ D+ L E T ET+ QQ F+ + K L
Sbjct: 177 PSKRQTLFFSATLPPDIVDLARSILTDPVRVEVTPASSTAETVSQQVYFVEREQKRGLLT 236
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
H+L ++ I A++F T + ++ LE + A+H KSQ+ R AL F+SG
Sbjct: 237 HLL---KEGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSG 293
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+L+ATD+A+RG+DI + V+NYD+P P YVHR+GRT RAG G AVSF +
Sbjct: 294 TLRVLVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEER 353
Query: 414 DLIHEIEAVVGKQLEEFE 431
+ +IE + + + E
Sbjct: 354 AYLRDIERTIRRNVPVVE 371
>gi|429765433|ref|ZP_19297729.1| putative ATP-dependent RNA helicase RhlE [Clostridium celatum DSM
1785]
gi|429186393|gb|EKY27337.1| putative ATP-dependent RNA helicase RhlE [Clostridium celatum DSM
1785]
Length = 426
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 219/381 (57%), Gaps = 17/381 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + E ++ E G +PT +Q + IP +L+G+D+LG AQTG+GKTAAFA+PI+
Sbjct: 3 FKELNVIEPVLKAISEAGYEKPTEIQENSIPVVLKGRDILGCAQTGTGKTAAFAIPIIQN 62
Query: 122 LA-----EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ + AL++ PTRELA Q+ E F L ++ V+ GG++ +Q + +
Sbjct: 63 IVTAKGNSKERSIKALIVAPTRELAIQIEENFTIYAKYLDIKNTVIFGGVNQTSQVRKIN 122
Query: 177 NRPHVVIATPGRIKVLLEE-DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L+ + D+ S K+ VLDEADR+LD+G +++ + LPK
Sbjct: 123 AGVDVLVATPGRLLDLVNQRHIDL----SNVKYFVLDEADRMLDMGMIHDVKKIISKLPK 178
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSATM ++ L+ E T E + Q F+PK K L+H+
Sbjct: 179 ERQNLLFSATMPKEVTKLVNSILKNPVKVEVQPVSSTAEIISQGVYFVPKKNKKSLLIHL 238
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L +D I+S I+F T + ++ LE+ ++ A+H KSQ+QR AL+ FK G
Sbjct: 239 L---KDESIKSVIVFSRTKHGANKIAKDLEKAGIQSAAIHGNKSQNQRQLALNNFKEGNI 295
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DI + V+NYD+P YVHR+GRT RAG G+A++F + + +
Sbjct: 296 RVLVATDIAARGIDIDELSHVINYDLPDVAETYVHRIGRTGRAGASGVAITFCDEEEKAM 355
Query: 416 IHEIEAVVGKQL----EEFEC 432
IE ++GK + EE+E
Sbjct: 356 FRSIEKIIGKSIPVLEEEYEI 376
>gi|384084915|ref|ZP_09996090.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 420
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 221/385 (57%), Gaps = 18/385 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+E + E G PTP+Q IP ++ G D+L AQTG+GKTAAFA+PILH+
Sbjct: 5 FASLGLSEPIWRAAAERGYTTPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 64
Query: 122 LA-------EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
LA P V ALV+ PTRELA Q+ E + G L LR +++GG+ + Q +
Sbjct: 65 LAATSETAFHGPSSVRALVLVPTRELAAQVEESVQLYGKNLSLRSLILIGGVKINPQMQK 124
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ S + LVLDEADR+LD+GF ++R + LP
Sbjct: 125 LRRSVDVLVATPGR---LLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLP 181
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSAT + +++TL + N E T +T+ Q+++ + ++ K L H
Sbjct: 182 KKRQNLLFSATFSPEIRTLADGLLNNPVSVEVASRNATADTVSQRFLAVDQDRKRELLTH 241
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++ + + ++F T L+ L + +A+A+H KSQ R AL FK G+
Sbjct: 242 LIGEQQ---WHQVLVFTRTKHGADRLAKHLSQGGMQAMAIHGDKSQGARTRALAEFKEGK 298
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+DI + V+NY++P P DYVHR+GRT RAG G AVS V+ ++
Sbjct: 299 VRVLVATDIAARGIDINELPHVVNYELPHVPEDYVHRIGRTGRAGNNGQAVSLVSVDERK 358
Query: 415 LIHEIEAVVGKQLEE-----FECKE 434
+ ++E ++ + + FE K+
Sbjct: 359 QLSDVEKLLKRSFTKEIIVGFEPKQ 383
>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
15579]
gi|187774670|gb|EDU38472.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
Length = 425
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 223/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+ E F+ G ++L+ V+ GG+ Q K+L
Sbjct: 63 LSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KVRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF ++
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEEIK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLIHKEI 368
>gi|389696462|ref|ZP_10184104.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388585268|gb|EIM25563.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 505
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 208/368 (56%), Gaps = 19/368 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F GLA+ ++ G +PTP+Q IP +EG+DV G+AQTG+GKTAAFALPILHR
Sbjct: 4 FTDFGLAQPILKALSAEGYEKPTPIQAQTIPYAMEGRDVCGIAQTGTGKTAAFALPILHR 63
Query: 122 LAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L +P LV++PTREL+ Q+A+ FKA G L L EVV GG+ + Q K+L
Sbjct: 64 LNANPKPRKPKSPRVLVLSPTRELSGQIADSFKAYGRNLRLSTEVVFGGVTISRQEKALA 123
Query: 177 NRPHVVIATPGRIKVLLEEDP----DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
V++ATPGR+ L++ DI + LVLDEAD++LD+GF L+ +
Sbjct: 124 QGVDVLVATPGRLIDLVDRRALSLRDI-------EILVLDEADQMLDLGFIHALKRIVTL 176
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
LPK+RQ+L FSATM + TL + T E ++Q IF+ N K V L
Sbjct: 177 LPKDRQSLFFSATMPKTISTLADSFLRDPAHVAVTPVATTAERVEQSVIFVQTNRKQVLL 236
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L D I ++F T + L++ A+H KSQ QR AL F+
Sbjct: 237 ETLL---RDPSIDRVLVFTRTKHGADKVVRGLDKAGIAGAAIHGNKSQPQRERALAGFRD 293
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G +L+ATD+A+RG+D+ V V+NYD+P P YVHR+GRTARAG GLA+SF +
Sbjct: 294 GSCRVLVATDIAARGIDVEGVTHVINYDLPNVPESYVHRIGRTARAGATGLAISFCNDEE 353
Query: 413 VDLIHEIE 420
+ +IE
Sbjct: 354 KAYLKDIE 361
>gi|385209581|ref|ZP_10036449.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385181919|gb|EIF31195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 511
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 215/380 (56%), Gaps = 11/380 (2%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
++ ++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FAL
Sbjct: 28 NTPMSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFAL 87
Query: 117 PILHRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
P+L RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 88 PLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQ 147
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF
Sbjct: 148 MMKLRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFA 204
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQTLLFSAT T D++ + T ++Q + + K K
Sbjct: 205 ALPVQRQTLLFSATFTDDIRAMAAGILRDPLNISVSPPNATASKIRQWVVTVDKKNKPDL 264
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
MH++++ R A++FV T L+ +L+E +H K Q RL AL RFK
Sbjct: 265 FMHLVAENN---WRHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFK 321
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ TDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V +
Sbjct: 322 TGEVQMLVVTDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCAD 381
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
+ + IEA++ + L E
Sbjct: 382 EAPQLAAIEALIRQTLRREE 401
>gi|419954669|ref|ZP_14470805.1| ATP-dependent RNA helicase [Pseudomonas stutzeri TS44]
gi|387968533|gb|EIK52822.1| ATP-dependent RNA helicase [Pseudomonas stutzeri TS44]
Length = 439
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 223/376 (59%), Gaps = 17/376 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++T + L R+PTPVQ IP +L+G+D++ AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V ALV+ PTRELA Q+ E F+ G L LR V GG+ + Q +
Sbjct: 61 QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ FS+ + LVLDEADR+LD+GF +EL +F LP
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNA---VGFSQLQALVLDEADRMLDLGFADELDQLFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT + ++ + E +T+KQ + + K K +H
Sbjct: 178 RKRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA---LHSFKSQSQRLSALHRFK 351
+L++ ++FV T + L++EL + +A +H K Q+ RL AL RFK
Sbjct: 238 LLAERR---WGQVLVFVKTRKGV---DQLVDELQAQGIASDAIHGDKPQASRLRALERFK 291
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G A+S V+ +
Sbjct: 292 AGEVQVLVATDVAARGLDIHDLPQVVNFDLPTVAEDYVHRIGRTGRAGASGEAISLVSAD 351
Query: 412 DVDLIHEIEAVVGKQL 427
+VD + IE ++ + L
Sbjct: 352 EVDQLAAIETLINQVL 367
>gi|372267577|ref|ZP_09503625.1| DEAD/DEAH box helicase [Alteromonas sp. S89]
Length = 474
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 222/376 (59%), Gaps = 10/376 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA + E G +PTP+Q IP ++ G DV+ AQTG+GKTA F LP+LHR
Sbjct: 3 FEDLGLAPEIARAVAEQGYTQPTPIQQQAIPVVMRGGDVMAAAQTGTGKTAGFTLPLLHR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L+ P V ALV+TPTRELA Q+ + ++ L +R VV GG+ + Q L
Sbjct: 63 LSAGPRARNNQVRALVLTPTRELAAQVFDNVQSYSEHLPMRHSVVFGGVKINPQMMRLRG 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
+++ATPGR+ L + F R + LVLDEADR+LD+GF +++ + + LP+ R
Sbjct: 123 GADILVATPGRLLDLYNQRAI---KFDRLETLVLDEADRMLDMGFIHDIKKILRVLPEKR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
Q LLFSAT + ++++L + N + T +T++Q+ + K+ K L H++
Sbjct: 180 QNLLFSATFSPEIRSLAKGLVNDPVEIDVAPRNSTTKTVQQKLHPVDKSRKASLLCHLI- 238
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ G A++F T + L+ LE+ A A+H KSQ+ R AL FK+G+ I
Sbjct: 239 --KENGWHQALVFSRTKHGANRLAKQLEQHRIPAAAIHGNKSQNARTKALAEFKNGKVQI 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG G AVS V+ +++ +
Sbjct: 297 LVATDIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSADEIKQLR 356
Query: 418 EIEAVVGKQLEEFECK 433
+IE ++ K +E E +
Sbjct: 357 DIERLIQKPIEREEIE 372
>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421751661|ref|ZP_16188700.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|421753517|ref|ZP_16190508.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|421757241|ref|ZP_16194123.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|421759101|ref|ZP_16195935.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|424674420|ref|ZP_18111338.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409086783|gb|EKM86896.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|409086998|gb|EKM87108.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|409091165|gb|EKM91168.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|409092696|gb|EKM92663.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|417434898|gb|EKT89830.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
Length = 441
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 228/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+ DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSHKTKAKKIDEVKII 400
>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
Length = 445
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 217/372 (58%), Gaps = 11/372 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L + E + PTP+Q IP LEG+DVLG AQTG+GKTAA ALPIL+
Sbjct: 3 TFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPILN 62
Query: 121 RLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+L ++ P+ LALV+ PTRELA Q+ + F A G L LR ++ GG+ Q K+L
Sbjct: 63 QLGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQVKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
H+++ATPGR+ L+ + ++ + VLDEADR+LD+GF +L+ + LP
Sbjct: 123 KRGAHILVATPGRLLDLMNQGHI---KLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPT 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ+L FSAT+ + L +K +VE ++QQ +F+ +N K L +
Sbjct: 180 QRQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLMFVERNFKQPLLQKI 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L E + A++F T R+ + LS L +A A+H KSQ R AL F+ Q
Sbjct: 240 LGGDE---VERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQV 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATDVA+RG+DI + V+N+D+P P YVHR+GRT RAG G+A+SF ++++
Sbjct: 297 QVLVATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTGRAGANGIAISFCSESERKE 356
Query: 416 IHEIEAVVGKQL 427
+ IE ++G+++
Sbjct: 357 LRSIERLIGQKV 368
>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
Kyoto]
gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
Kyoto]
Length = 425
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 222/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+PIL
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPILQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+ E F+ G ++L+ V+ GG+ Q K+L
Sbjct: 63 LSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 RGRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLIHKEI 368
>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella novicida FTE]
gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
subsp. novicida FTE]
Length = 441
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 228/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ L L ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVGK-----QLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G +LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPRAELEGFEATHNVPITSMSHKTKAKKIDEVKII 400
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ ++ E G P+P+Q IP +L+G+DV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V LV+TPTRELA Q+AE + G L LR VV GG+ + Q L
Sbjct: 61 ELLSKGQRAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V++ATPGR+ L + F++ + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKA---VKFNQLEILVLDEADRMLDMGFIRDIRKILAILPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++ L + N T+KQ + K+ K L+ +
Sbjct: 178 QRQNLMFSATFSDEIRQLAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K +D + ++F T + L+ LEE +A A+H KSQ+ R AL FK+GQ
Sbjct: 238 I-KQQDW--QQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKTGQV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+ ++ L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKL 354
Query: 416 IHEIEAVVGKQLE 428
+++IE ++ + L+
Sbjct: 355 LNDIERLINRVLD 367
>gi|429211643|ref|ZP_19202808.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428156125|gb|EKX02673.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 443
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 216/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL E ++ LG + PTPVQ IP +L+G+D+L AQTG+GKTA FALP+L
Sbjct: 1 MTFAALGLIEPLLRALDGLGYQNPTPVQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
+L ++ V ALV+ PTRELA Q+ + F+A G + LR V GG+ + Q
Sbjct: 61 QKLLQEGPQVAANSVRALVLVPTRELAEQVHDSFRAYGQHVPLRTAVAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNA---LKFTQLQVLVLDEADRMLDLGFARELEEVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K QTLLFSAT + ++ + E +T+KQQ I + K K +H
Sbjct: 178 KRHQTLLFSATFSEAIRQMAGGLLRDPLSIEVAPRNTAAKTVKQQLITVDKKRKAELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L R A++F T + L +L+ A ++H K Q RL AL RFK G+
Sbjct: 238 LLQARR---WRQALVFAKTRKGVDELVGVLQAEGIAADSIHGDKPQPARLRALQRFKDGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
L+ATDVA+RGLDI + LV+N+D+P DYVHR+GRT RAG G A+S V ++V
Sbjct: 295 VDFLVATDVAARGLDIEQMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQALSLVCADEVQ 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IE ++G+ L E
Sbjct: 355 QLAAIETLIGQLLPRSE 371
>gi|358636156|dbj|BAL23453.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 480
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 220/378 (58%), Gaps = 14/378 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL ++ + G PTP+Q IP +L G+D++G AQTG+GKTA F LP+L
Sbjct: 1 MSFADLGLIPELLRAVADTGYTTPTPIQQQAIPVVLAGRDIMGGAQTGTGKTAGFTLPLL 60
Query: 120 HRLAEDP--------YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
+RLA + V AL++ PTRELA Q+ E K + LR + GG+D+ Q
Sbjct: 61 NRLARHASASTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRTTCIYGGVDMKPQ 120
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
+ L N +V+ATPGR LL+ V ++ + LVLDEADR+LD+GF ++R +
Sbjct: 121 IQELRNGVEIVVATPGR---LLDHVQQKTIVLNQVEMLVLDEADRMLDMGFIPDIRRILD 177
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP +RQ+LLFSAT + +++ L + + E ET+ + +K
Sbjct: 178 LLPASRQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNTVSETITHVVHPVSAGLKRNL 237
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+H+L D A++FV+T +C L+ LE D A A+H K QSQR AL FK
Sbjct: 238 LVHLLRHEPDT---QALVFVATKLACGRLAHFLERHDIAADAIHGDKGQSQRTEALEAFK 294
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG+ +L+ATDVA+RGLDI + V+N+++P DYVHR+GRT RAGR G AVS V+
Sbjct: 295 SGKLRVLVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRKGRAVSLVSSE 354
Query: 412 DVDLIHEIEAVVGKQLEE 429
+ L+ +IE ++ Q+ +
Sbjct: 355 EKHLLADIEKLIKLQIPQ 372
>gi|427403555|ref|ZP_18894437.1| hypothetical protein HMPREF9710_04033 [Massilia timonae CCUG 45783]
gi|425717538|gb|EKU80494.1| hypothetical protein HMPREF9710_04033 [Massilia timonae CCUG 45783]
Length = 451
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 221/382 (57%), Gaps = 23/382 (6%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL++ V+ E G PTP+Q+ IP +L G D+L AQTG+GKTA F LPIL
Sbjct: 1 MSFSSLGLSDAIVRAVTEQGYTAPTPIQSQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 120 HRLAED-----------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
HRL+ D P + ALV+TPTRELA Q+ E + G +L V+ GG+ +
Sbjct: 61 HRLSNDAVGAAQRNKTAPRAIRALVLTPTRELAAQVEESVRLYGKYTNLNSAVIFGGVGI 120
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
Q K L + +++ATPGR LL+ S+ + L+LDEADR+LD+GF ++R
Sbjct: 121 NPQIKLLKHGVDILVATPGR---LLDHAGQGTVDLSKIEILILDEADRMLDMGFIHDIRK 177
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
V LP RQ LLFSAT + D++ L + N E TVE + Q+ + ++ K
Sbjct: 178 VLALLPPKRQNLLFSATFSDDIKALADRLLNNPQSIEVARRNSTVEVIAQKIHPVDRDKK 237
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE---AVALHSFKSQSQRLS 345
L H++ + ++F R+ H + L+E+L ++ A+A+H KSQS R
Sbjct: 238 HPMLAHLI---KSNNWHQVLVF---TRTKHGANKLVEQLGKDGIGAMAIHGNKSQSARTK 291
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
AL FK G +L+ATD+A+RG+DI + V+NYD+P P DYVHR+GRT RAG G AV
Sbjct: 292 ALSEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAV 351
Query: 406 SFVTQNDVDLIHEIEAVVGKQL 427
S V ++ ++ +IE ++ + L
Sbjct: 352 SLVCVDEHQMLKDIEKLIKQTL 373
>gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
holarctica FSC022]
Length = 441
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 228/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSGVIFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+ DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSHKNKAKKIDEVKII 400
>gi|444915540|ref|ZP_21235671.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
gi|444713263|gb|ELW54166.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
Length = 486
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 154/383 (40%), Positives = 218/383 (56%), Gaps = 18/383 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L LAE ++ KE G PTP+Q IP +LEGKDVLG AQTG+GKTAAF LPIL
Sbjct: 1 MTFEDLKLAEPLLRAVKEEGYSTPTPIQQQAIPYVLEGKDVLGCAQTGTGKTAAFTLPIL 60
Query: 120 HRLA-------EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
RL+ + ALV++PTRELA Q+ + +A G L V+ GG+ Q
Sbjct: 61 QRLSVGRPPPPARGRPIRALVLSPTRELAAQIGDSVRAYGRYTGLNSAVIFGGVGQNAQE 120
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL---VLDEADRVLDVGFEEELRVV 229
++L +++ATPGR+ L+ + F K L VLDEADR+LD+GF +++ V
Sbjct: 121 QTLRQGVDILVATPGRLLDLMNQG------FVSYKALEVFVLDEADRMLDMGFIHDVKRV 174
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LP+ RQTL FSATM ++Q L K E T ET+ Q+ F+ K K
Sbjct: 175 IAALPRPRQTLFFSATMPPEIQGLANSILVKPVRVEVAPVSTTAETIDQRLYFVEKEQKR 234
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L+H+L+ D GI+ A++F T + ++ LE A +H KSQ+ R AL
Sbjct: 235 GLLVHLLNS--DQGIQRALVFTRTKHGANRVARHLESAGIGAEPIHGNKSQNARERALAA 292
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FKSG +L+ATD+A+RG+DI + V+N+D+P P YVHR+GRT RAG G+A+SF
Sbjct: 293 FKSGACRVLVATDIAARGIDIDGISHVINFDLPNIPETYVHRIGRTGRAGAAGIALSFCD 352
Query: 410 QNDVDLIHEIEAVVGKQLEEFEC 432
+ + +IE + +++ E
Sbjct: 353 TEERAYLKDIERTIRRRVPVVEA 375
>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 453
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 148/374 (39%), Positives = 220/374 (58%), Gaps = 10/374 (2%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S++TF+ GL + + L + PT +Q IP+IL+G D++ AQTGSGKTAAF LP
Sbjct: 26 SSMTFSKFGLDQEILSALDTLELTAPTSIQEQAIPEILQGHDLIATAQTGSGKTAAFCLP 85
Query: 118 ILHRLAE----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
IL L + P V L+I PTRELA QL KA L LR +V+ GG+ +L Q K
Sbjct: 86 ILQALKDGEKAKPNHVRCLIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRK 145
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L +++ATPGR+ + L + DI +F LVLDEADR+LD+GF +EL + Q L
Sbjct: 146 YLKRGSDILVATPGRL-LDLHQRGDI--LFDSLTHLVLDEADRLLDLGFAKELDQIIQAL 202
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293
PK RQTLLFSAT ++ L + N+ + + Q + K K L+
Sbjct: 203 PKQRQTLLFSATFAPPIKKLAKKILNQPKDVTTIQKAAAKPNINQWLHPVDKKRKTELLL 262
Query: 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353
+L++ + I+F +T ++ L++ L + A ALHS ++Q +R+ +FK+
Sbjct: 263 ELLNRKPHAQV---IVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNN 319
Query: 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413
+ +IL+ATDVA+RG+DI + LV+NYD+P+ DY+HR+GRT RAG G A S + ++
Sbjct: 320 EISILVATDVAARGIDIQNLPLVINYDLPKVSEDYIHRIGRTGRAGHAGQAFSIASADEF 379
Query: 414 DLIHEIEAVVGKQL 427
D + +IEA+ GK++
Sbjct: 380 DALLDIEALTGKKI 393
>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
indolifex HEL-45]
gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
indolifex HEL-45]
Length = 438
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 149/387 (38%), Positives = 220/387 (56%), Gaps = 11/387 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F +GL + V E+G++ PTP+Q IP+ + G+DV+GLAQTG+GKTAAF +P+L +
Sbjct: 4 FDMMGLPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLAQ 63
Query: 122 LAE-----DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ E +P V LV+ PTRELA Q+A + G ++ +VVGG + TQ K L
Sbjct: 64 MMELEGRPEPRSVRGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKRLE 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
++IATPGR+ LL+ T FLVLDEAD++LD+GF +LR + +PK
Sbjct: 124 RGVDLLIATPGRLLDLLDRRA---VKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKE 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT+LFSATM + + N E K + + Q+ FI K K L +L
Sbjct: 181 RQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKTELLKELL 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+K + A++F T L L + +A ++H KSQ QR A+ FK G T
Sbjct: 241 AKHKG---ERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDIT 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RGLDIP V V N+++P P +YVHR+GRTARAG+ G AV+F +++ +
Sbjct: 298 VLVATDVAARGLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEMGEL 357
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITR 443
I+ +G + + EV+ + ++
Sbjct: 358 KAIQKTMGISIPVASGRPWEVIDEPSK 384
>gi|392427583|ref|YP_006468577.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391357546|gb|AFM43245.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 488
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 235/396 (59%), Gaps = 21/396 (5%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F LGL+E +++ +G TP+Q IP L+G+D++G AQTG+GKTAA+ +P++
Sbjct: 3 SFTDLGLSETIIRSIVNMGFEETTPIQEMTIPIALQGRDLIGQAQTGTGKTAAYGIPLIE 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
R AE + +V+ PTRELA Q+AE+ +G + + GG ++ Q ++L RPH
Sbjct: 63 RFAEQSEQIQGIVLAPTRELAVQVAEELNKIGQFKGIHSLPIYGGQNIDWQIRALRKRPH 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR L++ + K +VLDEAD +L++GF E++ + + +P+ RQTL
Sbjct: 123 IIVATPGR---LMDHMRRRTIRLNEIKIVVLDEADEMLNMGFLEDIETILKEIPEIRQTL 179
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATM +Q + + + F + TV ++Q YI +P+ +K VL+++
Sbjct: 180 LFSATMPKQIQNIAQRFMKEPEFIQIKATGVTVSDIEQHYIEVPEKLK----FDVLTRLL 235
Query: 301 DMGIRS---AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
D I+S +I+F T R LS L + A +H +QS+R S L +FK G +
Sbjct: 236 D--IQSPELSIVFARTKRRVDELSEGLNKRGYSAEGIHGDLTQSKRDSVLRQFKDGTIDV 293
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDI V V N+DIP+ YVHRVGRT RAG+ GLA++FVT ++ ++
Sbjct: 294 LVATDVAARGLDISGVTHVFNFDIPQDTESYVHRVGRTGRAGKTGLAITFVTPREMGMLR 353
Query: 418 EIEAVVGKQ---------LEEFECKEQEVLSDITRV 444
IE+V+ ++ +E + +++ +++I RV
Sbjct: 354 LIESVIKRRVLRKPIPTIVEAVQGQQRLTMNEILRV 389
>gi|381395029|ref|ZP_09920736.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379329307|dbj|GAB55869.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 399
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 212/369 (57%), Gaps = 11/369 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL++ V + G PTP+Q IP +L GKDV+ AQTG+GKTAAF LP++
Sbjct: 1 MSFSALGLSKELVSAVTDKGYTTPTPIQEQAIPAVLSGKDVMAAAQTGTGKTAAFTLPLI 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
R A + P + ALV+TPTRELA Q+A +R VV GG+ + Q K
Sbjct: 61 QRFATNYSEPRPNHIKALVLTPTRELAAQVAANIDEYKVNTPIRSTVVFGGVSINPQMKH 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +++ATPGR+ L +++ FS LVLDEADR+LD+GF +++ + + LP
Sbjct: 121 LRRGCDILVATPGRLLDLFQQNA---VKFSDVSVLVLDEADRMLDMGFIHDIKRILKLLP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQ LLFSAT + D++ L N +++ +++ K K L+H
Sbjct: 178 QKRQNLLFSATFSEDIRGLASRLVNNPVEISVTPNNAAAPSVEHSIVYLEKANKSKLLIH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++ E G + A++F T + L+ L + A A+H KSQ R AL FK+G+
Sbjct: 238 LI---ESNGWQQALVFTRTKHGANRLTKQLCSHEISAAAIHGNKSQGARTKALASFKNGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ATD+A+RG+DI + V+NYD+P P DYVHR+GRT RAG G AVSFVT D
Sbjct: 295 LRILVATDIAARGIDIQQLPNVVNYDLPNVPEDYVHRIGRTGRAGSVGQAVSFVTAEDFK 354
Query: 415 LIHEIEAVV 423
+ +I+ ++
Sbjct: 355 QLSDIQNLI 363
>gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
Length = 536
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/395 (38%), Positives = 226/395 (57%), Gaps = 12/395 (3%)
Query: 39 KTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGK 98
+ T + N P+S+ + S F+ LGL++ V+ LG++ PTP+QT+ IP +LEG+
Sbjct: 14 RDTSSDSDNNVRPDSSISASNA-FSALGLSKRVVRPLAVLGLKDPTPIQTNAIPLVLEGR 72
Query: 99 DVLGLAQTGSGKTAAFALPILHRLAED-----PYGVLALVITPTRELAYQLAEQFKALGS 153
DV+GLAQTG+GKTAAF LP++ RL D P V AL++ PTREL Q+A+ +A
Sbjct: 73 DVMGLAQTGTGKTAAFGLPLIDRLLSDGDKVQPRSVRALILAPTRELVNQIADNLRAYVK 132
Query: 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213
+ VVGG ++ TQ + L V++ATPGR+ L++ K+LVLDE
Sbjct: 133 KTPVWVSSVVGGQNINTQIRHLAKGTDVLVATPGRLLDLVDRKA---VKLDTAKYLVLDE 189
Query: 214 ADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTV 273
AD++LD+GF LR + L + RQTLLFSATM ++ L + E K
Sbjct: 190 ADQMLDMGFIHALRRIEPLLGRPRQTLLFSATMPKLVEELSKSYLTNPERIEVARAGKAA 249
Query: 274 ETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA 333
+ ++Q +I K L +L++ D +++F T C L L A +
Sbjct: 250 DKVRQSVHYIATKDKLNLLSKLLAERPD---DLSLVFGRTKHGCEKLMKQLVAQGFAAAS 306
Query: 334 LHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVG 393
+H KSQ QR AL FKSG IL+ATDVA+RG+DIP V V N+++P P +YVHR+G
Sbjct: 307 IHGNKSQGQRDRALREFKSGAVRILVATDVAARGIDIPAVSHVYNFNLPEVPENYVHRIG 366
Query: 394 RTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
RTARAGR G AV+F ++ ++ +I+ ++ +E
Sbjct: 367 RTARAGRDGEAVAFCAPDERKMLRDIQRLMNFDIE 401
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 213/363 (58%), Gaps = 8/363 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
FA GL +Q ELG TP+Q+ IP L GKD++G AQTG+GKTAAF LP++H
Sbjct: 3 NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
++A++ ++ALV+TPTRELA Q+AE+ L +R + GG D+ Q ++L +P
Sbjct: 63 KIAKEEERIVALVMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKKKPQ 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
++I TPGR LL+ + +VLDEAD +LD+GF ++++ + + +P+NRQTL
Sbjct: 123 IIIGTPGR---LLDHINRKTIRLDDVQTVVLDEADEMLDMGFMDDIQSILKLVPENRQTL 179
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATM ++Q L + + Q YI +P+ K LS++
Sbjct: 180 LFSATMPPNIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPERQK----FEALSRLL 235
Query: 301 DM-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
DM AI+F T R L+ L++ A LH SQ QR + + +F+ G +L+
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLD+ V V+N+D+P+ P YVHR+GRT RAG+ G A SFVT ++D ++ I
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFI 355
Query: 420 EAV 422
E V
Sbjct: 356 ERV 358
>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
Length = 425
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 218/373 (58%), Gaps = 14/373 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L L E ++ ++ G PTP+Q IP +L+GKD+LG AQTG+GKTAAF++PIL
Sbjct: 1 MTFENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 120 HRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
+L ++ + AL++TPTRELA Q+ E F A G LR V+ GG+ Q L
Sbjct: 61 QKLYKTDNRKSIKALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDELKR 120
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTK---FLVLDEADRVLDVGFEEELRVVFQCLP 234
+++ATPGR++ L+ + F K F VLDEADR+LD+GF ++R + + LP
Sbjct: 121 GVQILVATPGRLQDLVNQG------FINLKALEFFVLDEADRMLDMGFIHDIRRILKLLP 174
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTL FSATM +++TL E TV+T+ Q F+ K K L+H
Sbjct: 175 AKRQTLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIH 234
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L ++ I S +IF T L+ L + A A+H KSQ+ R AL FK+ +
Sbjct: 235 LL---KNPAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHE 291
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF ++
Sbjct: 292 LRVLIATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELP 351
Query: 415 LIHEIEAVVGKQL 427
+ +I+ ++GK +
Sbjct: 352 YLKDIQKLIGKSI 364
>gi|387816925|ref|YP_005677269.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
Length = 425
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 221/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+ E F+ G ++L+ V+ GG+ Q K L
Sbjct: 63 LSKDKKANKNPRSIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKVL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLIHKEI 368
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 217/370 (58%), Gaps = 8/370 (2%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
TT S F L L+ V+ C LG PTP+Q +P L G+D+ G A TGSGKTAAF
Sbjct: 145 TTFSAANFTELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAF 204
Query: 115 ALPILHR-LAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
LP L R L P V A LV+ PTRELA Q+ + + L +R +VVGG+
Sbjct: 205 MLPCLERMLHRGPKPVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANV 264
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVV 229
QA SL +RP VV+ATPGR L++ + V LVLDEADR+L++GF EE+R +
Sbjct: 265 QATSLRSRPEVVVATPGR---LIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREI 321
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
+ PK RQT+LFSAT+TS ++ L E S A + T TL ++ + +
Sbjct: 322 VRHCPKRRQTMLFSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAA 381
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
+ H+L+ + + IIF T + H L +++ +A LH +Q+QRL+AL
Sbjct: 382 MKEAHLLAIVARTFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEE 441
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
F++G+AT ++ATDVA+RGLDI VD V++YD PR Y+HRVGRTARAGR G A++F+
Sbjct: 442 FRTGEATHMVATDVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFME 501
Query: 410 QNDVDLIHEI 419
++D LI +
Sbjct: 502 ESDRKLIKAV 511
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 217/372 (58%), Gaps = 10/372 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL++ ++ E G P+P+Q IP +L+GKDVL AQTG+GKTA F LP++
Sbjct: 1 MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMI 60
Query: 120 HRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
HRL +P + ALV+TPTRELA Q+ E + ++ V+ GG++ Q ++L
Sbjct: 61 HRLINNPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR LL+ S +FLVLDEADR+LD+GF +++ V + +P
Sbjct: 121 RQGVDILVATPGR---LLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPA 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT +D++ EA T E + Q+ + K+ K L+
Sbjct: 178 KRQNLLFSATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTEMLIKF 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + ++F T + LS LE+ + A+H K+Q+ R+ AL FKSG+
Sbjct: 238 I---REGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDIP + V+NY++P P DYVHR+GRT RAG G A+S V ++VD
Sbjct: 295 RVLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDY 354
Query: 416 IHEIEAVVGKQL 427
+ IE ++G++L
Sbjct: 355 VRGIEKLLGEKL 366
>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
Length = 464
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/370 (41%), Positives = 216/370 (58%), Gaps = 14/370 (3%)
Query: 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL---- 122
+AE + ++G TP+Q IP +L GKDV+G AQTG+GKTAAF+LP+L RL
Sbjct: 1 MAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHE 60
Query: 123 --AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
+ P + V ALV+ PTRELA Q+A+Q LR VV GGMD+ Q L
Sbjct: 61 NASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKG 120
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
V++ATPGR LL+ V ++ +++VLDEADR+LD+GF +L+ + LPK+R
Sbjct: 121 VEVLVATPGR---LLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRT 177
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT + +++ L E +T T++Q++ + + K + VL +
Sbjct: 178 TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKE 237
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ IR A IF ++ C L+ LE A ALH KSQ +RL AL FK+G+ +L
Sbjct: 238 RD---IRQAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLL 294
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ TDVA+RGLDI V V NYD+P DYVHR+GRT RAG GLAV+ VT +D + +
Sbjct: 295 VCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVAD 354
Query: 419 IEAVVGKQLE 428
IE + K++E
Sbjct: 355 IEKLTKKKIE 364
>gi|418404623|ref|ZP_12978074.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
gi|359501422|gb|EHK74033.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
Length = 504
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 225/394 (57%), Gaps = 15/394 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+E V T G +PTP+Q IP +L+ D++GLAQTG+GKTAAF LP++
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 121 RLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+L D P + ALV+ PTREL Q+A K L+ +VVGG+ + Q + L
Sbjct: 63 KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L+ ++ ++LVLDEAD++LD+GF +LR + + +PK
Sbjct: 123 ARGVDILVATPGRLLDLVSRKA---VTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKDVYLMH 294
NRQTLLFSATM + L E K + ++Q F+P K++K L
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ D G+ ++IF T L L+ + +A ++H KSQ QR AL F+ G+
Sbjct: 240 TLTANPD-GL--SLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGE 296
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RG+DIP V V NYD+P P YVHR+GRTAR GR G+A++F +++
Sbjct: 297 IRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIR 356
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
L+ +IE ++G Q+ E +D R K R
Sbjct: 357 LLRDIEKLMGIQI---AVASGEAPADQARPSKGR 387
>gi|384532968|ref|YP_005715632.1| DEAD/DEAH box helicase [Sinorhizobium meliloti BL225C]
gi|333815144|gb|AEG07811.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
BL225C]
Length = 504
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 225/394 (57%), Gaps = 15/394 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+E V T G +PTP+Q IP +L+ D++GLAQTG+GKTAAF LP++
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 121 RLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+L D P + ALV+ PTREL Q+A K L+ +VVGG+ + Q + L
Sbjct: 63 KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L+ ++ ++LVLDEAD++LD+GF +LR + + +PK
Sbjct: 123 ARGVDILVATPGRLLDLVSRKA---VTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKDVYLMH 294
NRQTLLFSATM + L E K + ++Q F+P K++K L
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ D G+ ++IF T L L+ + +A ++H KSQ QR AL F+ G+
Sbjct: 240 TLTANPD-GL--SLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGE 296
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RG+DIP V V NYD+P P YVHR+GRTAR GR G+A++F +++
Sbjct: 297 IRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIR 356
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
L+ +IE ++G Q+ E +D R K R
Sbjct: 357 LLRDIEKLMGIQI---AVASGEAPADQARPSKGR 387
>gi|16264922|ref|NP_437714.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
1021]
Length = 503
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 225/394 (57%), Gaps = 15/394 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+E V T G +PTP+Q IP +L+ D++GLAQTG+GKTAAF LP++
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 121 RLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+L D P + ALV+ PTREL Q+A K L+ +VVGG+ + Q + L
Sbjct: 63 KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L+ ++ ++LVLDEAD++LD+GF +LR + + +PK
Sbjct: 123 ARGVDILVATPGRLLDLVSRKA---VTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKDVYLMH 294
NRQTLLFSATM + L E K + ++Q F+P K++K L
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ D G+ ++IF T L L+ + +A ++H KSQ QR AL F+ G+
Sbjct: 240 TLTANPD-GL--SLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGE 296
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RG+DIP V V NYD+P P YVHR+GRTAR GR G+A++F +++
Sbjct: 297 IRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIR 356
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
L+ +IE ++G Q+ E +D R K R
Sbjct: 357 LLRDIEKLMGIQI---AVASGEAPADQARPSKGR 387
>gi|409398007|ref|ZP_11248859.1| ATP-dependent RNA helicase [Pseudomonas sp. Chol1]
gi|409117513|gb|EKM93941.1| ATP-dependent RNA helicase [Pseudomonas sp. Chol1]
Length = 441
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 223/376 (59%), Gaps = 17/376 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++T + L R+PTPVQ IP +L+G+D++ AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V ALV+ PTRELA Q+ E F+ G L LR V GG+ + Q +
Sbjct: 61 QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F++ + LVLDEADR+LD+GF +EL +F LP
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNA---VGFNQLQALVLDEADRMLDLGFADELDQLFCALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQTLLFSAT + ++ + E +T+KQ + + K K +H
Sbjct: 178 KRRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVA---LHSFKSQSQRLSALHRFK 351
+L++ ++FV T + L++EL + +A +H K Q+ RL AL RFK
Sbjct: 238 LLAERR---WGQVLVFVKTRKGV---DQLVDELQAQGIASDAIHGDKPQASRLRALERFK 291
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ IL+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G AVS V+ +
Sbjct: 292 AGEVRILVATDVAARGLDIHDLPQVVNFDLPTVAEDYVHRIGRTGRAGATGEAVSLVSAD 351
Query: 412 DVDLIHEIEAVVGKQL 427
+VD + IE ++ + L
Sbjct: 352 EVDQLAAIETLINQVL 367
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 219/372 (58%), Gaps = 10/372 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL++ ++ E G P+P+Q IPK+LEGKDVL AQTG+GKTA F LP+L
Sbjct: 1 MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPML 60
Query: 120 HRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
H L +P V ALV+TPTRELA Q+ + + + ++ V+ GG++ Q +++
Sbjct: 61 HNLIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTI 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR LL+ + S +FLVLDEADR+LD+GF +++ V + +P
Sbjct: 121 RQGVDILVATPGR---LLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPA 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT D++ L EA T E + Q+ + K+ K L+
Sbjct: 178 KRQNLLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKF 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
++ + ++F T + LS L++ + A+H K+Q+ R+ AL FKSG+
Sbjct: 238 IN---EGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKI 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDIP + V+NY++P P DYVHR+GRT RAG G A+S V ++V
Sbjct: 295 RVLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAY 354
Query: 416 IHEIEAVVGKQL 427
+ IE ++G++L
Sbjct: 355 VRGIEKLLGEKL 366
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 214/363 (58%), Gaps = 8/363 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
FA GL +Q ELG TP+Q+ IP L GKD++G AQTG+GKTAAF LP++H
Sbjct: 3 NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
++A++ ++AL++TPTRELA Q+AE+ L +R + GG D+ Q ++L +P
Sbjct: 63 KIAKEEERIVALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKRKPQ 122
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
++I TPGR LL+ + +VLDEAD +LD+GF E+++ + + +P+ RQTL
Sbjct: 123 IIIGTPGR---LLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTL 179
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATM +++Q L + + + Q YI +P+ K LS++
Sbjct: 180 LFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPERQK----FEALSRLL 235
Query: 301 DM-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
DM AI+F T R L+ L++ A LH SQ QR + + +F+ G +L+
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLD+ V V+N+D+P+ P YVHR+GRT RAG+ G A SFVT ++D ++ I
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFI 355
Query: 420 EAV 422
E V
Sbjct: 356 ERV 358
>gi|334320464|ref|YP_004557093.1| DEAD/DEAH box helicase [Sinorhizobium meliloti AK83]
gi|384538673|ref|YP_005722757.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407723120|ref|YP_006842781.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
gi|334098203|gb|AEG56213.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
gi|336037326|gb|AEH83256.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407323180|emb|CCM71781.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
Length = 504
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 225/394 (57%), Gaps = 15/394 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+E V T G +PTP+Q IP +L+ D++GLAQTG+GKTAAF LP++
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 121 RLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+L D P + ALV+ PTREL Q+A K L+ +VVGG+ + Q + L
Sbjct: 63 KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L+ ++ ++LVLDEAD++LD+GF +LR + + +PK
Sbjct: 123 ARGVDILVATPGRLLDLVSRKA---VTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKDVYLMH 294
NRQTLLFSATM + L E K + ++Q F+P K++K L
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ D G+ ++IF T L L+ + +A ++H KSQ QR AL F+ G+
Sbjct: 240 TLTANPD-GL--SLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGE 296
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RG+DIP V V NYD+P P YVHR+GRTAR GR G+A++F +++
Sbjct: 297 IRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIR 356
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
L+ +IE ++G Q+ E +D R K R
Sbjct: 357 LLRDIEKLMGIQI---AVASGEAPADQARPSKGR 387
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 214/380 (56%), Gaps = 12/380 (3%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ +VTF GL ++ E G +PTP+Q IP + G+DV+G AQTG+GKTA F+L
Sbjct: 10 NESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSL 69
Query: 117 PILHRLAEDP--------YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
PI+H L D + V AL++TPTRELA Q+ + LR VV GG+D+
Sbjct: 70 PIIHNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDM 129
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
Q + L +++ATPGR LL+ S+ + LVLDEADR+LD+GF +L+
Sbjct: 130 NPQTEQLRRGVEILVATPGR---LLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQR 186
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ LP +RQTLLFSAT + +++ L E T E ++Q +P N K
Sbjct: 187 IINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHK 246
Query: 289 DVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSAL 347
L+H+L + + G+ R I+F ++ C L+ LE A A+H K+Q++R+ L
Sbjct: 247 QAALVHLLKQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTL 306
Query: 348 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407
FK G +L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G A+S
Sbjct: 307 EAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSL 366
Query: 408 VTQNDVDLIHEIEAVVGKQL 427
D L+ +IE ++ + L
Sbjct: 367 FAPGDERLLADIEKLIKRNL 386
>gi|431928590|ref|YP_007241624.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431826877|gb|AGA87994.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 441
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 220/373 (58%), Gaps = 11/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++T + L R+PTPVQ IP +L+G+D++ AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V ALV+ PTRELA Q+ E F+ G L LR V GG+ + Q +
Sbjct: 61 QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR+ L ++ F++ + LVLDEADR+LD+GF +EL +F LP
Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNA---VGFNQLQALVLDEADRMLDLGFADELDQLFSALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQTLLFSAT + ++ + E +T+KQ + + K K +H
Sbjct: 178 KKRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L++ ++FV T + L L+ + A+H K Q+ RL AL RFK+G+
Sbjct: 238 LLAEKR---WGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + V+N+D+P DYVHR+GRT RAG G AVS V+ ++VD
Sbjct: 295 VQVLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVD 354
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ + L
Sbjct: 355 QLAAIETLINQVL 367
>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 452
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 225/385 (58%), Gaps = 12/385 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGLAE ++ + G PTP+Q IP ++EG+D++G+AQTG+GKTA+F LPIL+R
Sbjct: 4 FSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNR 63
Query: 122 LAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L E+ P AL+++PTREL+ Q+ E + + + +VVGG+ Q ++L
Sbjct: 64 LIEENRPTHPKTCRALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRALS 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
V++ATPGR+ L++ S TK L+LDEAD++LD+GF +R + LP
Sbjct: 124 KGVDVLVATPGRLLDLMQSGAV---KLSETKILILDEADQMLDLGFFPAIRKIVSFLPNK 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQT L SATM ++ L + + + +E ++Q + +PK K L+ ++
Sbjct: 181 RQTALLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLPKESKKDLLLELM 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
S D + AI+F T ++ L + ++ A+H KSQ+QR+ AL FK+G
Sbjct: 241 S---DRAVERAIVFSRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKTGAVK 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATD+A+RG+D+ V V+N+D+P P YVHR+GRTARAG+ G+AVS + + +
Sbjct: 298 ILVATDIAARGIDVDNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAVSMCEPGEYEYL 357
Query: 417 HEIEAVVGKQLEE-FECKEQEVLSD 440
+IE + G ++ F E + L++
Sbjct: 358 RDIERLTGLDIDRVFVGDEAKFLAE 382
>gi|433610674|ref|YP_007194135.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|429555616|gb|AGA10536.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 504
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 225/394 (57%), Gaps = 15/394 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL+E V T G +PTP+Q IP +L+ D++GLAQTG+GKTAAF LP++
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 121 RLAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
+L D P + ALV+ PTREL Q+A K L+ +VVGG+ + Q + L
Sbjct: 63 KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+++ATPGR+ L+ ++ ++LVLDEAD++LD+GF +LR + + +PK
Sbjct: 123 ARGVDILVATPGRLLDLVSRKA---VTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKDVYLMH 294
NRQTLLFSATM + L E K + ++Q F+P K++K L
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
L+ D G+ ++IF T L L+ + +A ++H KSQ QR AL F+ G+
Sbjct: 240 TLTANPD-GL--SLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGE 296
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RG+DIP V V NYD+P P YVHR+GRTAR GR G+A++F +++
Sbjct: 297 IRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIR 356
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSDITRVYKAR 448
L+ +IE ++G Q+ E +D R K R
Sbjct: 357 LLRDIEKLMGIQI---AVASGEAPADQARPSKGR 387
>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 471
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 210/355 (59%), Gaps = 12/355 (3%)
Query: 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP------YGVLALVITP 136
PTP+Q IP IL G+D+LG AQTG+GKTAAFA+P + L E+ + AL++TP
Sbjct: 24 PTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQLLREEKESHGAKQNIRALIVTP 83
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA Q+ E F G L+C VV GG+ Q + L R +++ATPGR+ L+ D
Sbjct: 84 TRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEKLKQRVDILVATPGRLLALI--D 141
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
I + K L+LDEADR+LD+GF +++ + P +QTLLFSATM D+ L
Sbjct: 142 QKIVNI-DHIKILILDEADRMLDMGFIHDVKKIIARTPLKKQTLLFSATMPPDIAKLAGT 200
Query: 257 SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
E TV+T+ Q F+ K+ K L+HVL +D I SA++F T
Sbjct: 201 ILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVL---KDNNIVSALVFTRTKHG 257
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
L+ L + A A+H KSQ R SAL+ FK+ IL+ATD+A+RG+DI + V
Sbjct: 258 ADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRILIATDIAARGIDIDELTHV 317
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431
+NYD+P P YVHR+GRT RAG GG A+SF ++ + +++IE ++GK++ E +
Sbjct: 318 INYDLPDIPETYVHRIGRTGRAGLGGTAISFCDYDEKEQLNDIERLIGKKITEIK 372
>gi|156096160|ref|XP_001614114.1| DEAD/DEAH box helicase domain containing protein [Plasmodium vivax
Sal-1]
gi|148802988|gb|EDL44387.1| DEAD/DEAH box helicase domain containing protein [Plasmodium vivax]
Length = 489
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/426 (34%), Positives = 237/426 (55%), Gaps = 23/426 (5%)
Query: 50 DPNSTTTDST--VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTG 107
D NS ++ VTF LG+ +W V+ K + + PT +Q C+P I+ G +V+G ++TG
Sbjct: 46 DGNSAGGAASPPVTFEELGVEDWLVKISKTVQISHPTKIQQLCLPLIMRGHNVIGTSETG 105
Query: 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167
+GKT + IL L ++P+GV ALV+ PTREL Q+ EQF G + ++ +GG
Sbjct: 106 TGKTICYCWGILQELNKNPFGVFALVLLPTRELVVQVVEQFLLYGHKIGIKIISCIGGSS 165
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
L+ Q + ++ +PHVV+ TPGR +++ D+ F R +FLVLDEAD +L +E +L
Sbjct: 166 LIEQRRGVLAKPHVVVGTPGRTSDVMDNCEDVRSCFRRLRFLVLDEADLLLRSCYEAKLE 225
Query: 228 VVFQCL---------------PKNRQTLLFSATMTSDLQTLLE-LSANKAYFYEAYEGFK 271
+ + + R+TLLFS+T+T L+ L K
Sbjct: 226 GILRGVRGGGSGETSGPVGGAVGGRRTLLFSSTITDSLELLANSFPQEDLLLVNVNRKQK 285
Query: 272 TVETLKQQYIFIPKNVKDVYLMHVL-SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE 330
++ L Q+Y+++ + + YL+++L K+ D +S IIF C L+ +L L
Sbjct: 286 PLKNLDQRYVYVDEIAQMTYLVYLLRKKLPD---QSGIIFTDNSYRCELVYTVLSMLGGF 342
Query: 331 AV-ALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYV 389
+V ++HS K +RL+AL + K+G IL+ATD+ SRG+DIP V+N+D P YV
Sbjct: 343 SVESIHSSKEPKKRLAALSKIKNGGCNILVATDIISRGIDIPKTSFVINFDFPNDSILYV 402
Query: 390 HRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR 449
HRVGRTARA R G+A+SFV + DV+ + + + L+ + + +EVL D+ V + +
Sbjct: 403 HRVGRTARANRKGVAISFVDKRDVNSFNSVMQTMRGALKPWRLRRREVLQDMFHVGRVLK 462
Query: 450 VATMKL 455
A + L
Sbjct: 463 KAELLL 468
>gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
Length = 464
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/371 (38%), Positives = 217/371 (58%), Gaps = 11/371 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL + + + G PTP+Q IP +++G+D++GLAQTG+GKT AFA PIL R
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 122 LAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L+ + G LV+ PTRELA Q+A F G+GL+LR +V GG + Q + L
Sbjct: 69 LSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLE 128
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
H+++ATPGR+ L+E+ + + L+LDEAD++LD+GF LR + + +P
Sbjct: 129 RGAHILVATPGRLIDLMEQRAV---SLDKVETLILDEADQMLDLGFIHALRAIAKNVPSK 185
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTL FSATM +++L T ++Q+ F+ + K L+
Sbjct: 186 RQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIE-- 243
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K+ D +RSAI+F T + L + D ++VA+H KSQSQR AL FK+G+
Sbjct: 244 -KIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVP 302
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
IL+ATD+A+RG+ + + V+NYD+P P +VHR+GRTARAG G+A+SF ++++ +
Sbjct: 303 ILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTL 362
Query: 417 HEIEAVVGKQL 427
IE + G +L
Sbjct: 363 RAIEKLTGLKL 373
>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 783
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 215/381 (56%), Gaps = 7/381 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F + L+ ++ C+ LG +PTP+Q CIP L G+D+ G A TGSGKTAAFALP L
Sbjct: 148 SFMEINLSRPLLRACEVLGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 207
Query: 121 RLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
RL P V A L++TPTRELA Q+ + L +RC ++VGG+ Q +L +
Sbjct: 208 RLLFRPKRVQAIRVLILTPTRELAVQVHSMVEKLAQFTDIRCCLIVGGLSTKVQESALRS 267
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
P +V+ATPGR+ L + L+LDEADR+L++GF E+ + + PK R
Sbjct: 268 MPDIVVATPGRMIDHLRNTMSVD--LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 325
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QT+LFSATMT ++ L++LS K A K TL ++ + I + +++V VL
Sbjct: 326 QTMLFSATMTEEINELIKLSLTKPLRLSADPSTKRPATLTEEVVRI-RRMREVNQEAVLL 384
Query: 298 KMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ S IIF T ++ H L +L +A LH +Q QRL AL F+ Q
Sbjct: 385 ALCSKTFTSRVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVD 444
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+ATDVA+RGLDI V V+NY PR YVHRVGRTARAGR G AV+FVT D L+
Sbjct: 445 FLIATDVAARGLDIIGVQTVINYACPRELTSYVHRVGRTARAGREGYAVTFVTDTDRSLL 504
Query: 417 HEIEAVVGKQLEEFECKEQEV 437
I G +L+ EQ +
Sbjct: 505 KAIAKRAGSKLKSRIVAEQSI 525
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 223/382 (58%), Gaps = 12/382 (3%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
D +++F LGL+ ++ + G P+P+Q IP +LEGKDV+ AQTG+GKTA F L
Sbjct: 20 DQSMSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTL 79
Query: 117 PILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
P+L L V ALV+TPTRELA Q+AE + G L LR VV GG+ + Q
Sbjct: 80 PLLELLTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQI 139
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
L +++ATPGR+ L + F++ + L+LDEADR+LD+GF +++ + +
Sbjct: 140 SKLGKGVDILVATPGRLLDLFNQRA---LNFNQLEVLILDEADRMLDMGFIHDIKKILKV 196
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF-IPKNVKDVY 291
LP RQ L+FSAT + D++ L + N T +T+ +QYI+ + + K
Sbjct: 197 LPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTV-EQYIYQVDQKQKTAA 255
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+H++ K D + ++F T + ++ LE D A A+H KSQ R AL FK
Sbjct: 256 LIHLI-KQNDW--KQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFK 312
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG+ +L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG G AVS V+ +
Sbjct: 313 SGEVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGD 372
Query: 412 DVDLIHEIEAVVGKQLEEFECK 433
+ L+ +IE ++ +++ E +
Sbjct: 373 ESKLLRDIERLIKQKIPRKEVE 394
>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
Length = 425
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 220/373 (58%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+ E F+ G ++L+ V+ GG+ Q K L
Sbjct: 63 LSKDKKANKNPKPIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKVL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KIRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G+
Sbjct: 239 LL---RDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGK 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLINKEI 368
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 219/385 (56%), Gaps = 10/385 (2%)
Query: 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTA 112
+ + D +++F LGL+ ++ G PTP+Q IP +LEGKDV+ AQTG+GKTA
Sbjct: 7 AASRDQSMSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTA 66
Query: 113 AFALPILHRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
F LP+L L+ V ALV+TPTRELA Q+AE G L L+ VV GG+ +
Sbjct: 67 GFTLPLLELLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGI 126
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
Q L +++ATPGR+ L + F++ + LVLDEADR+LD+GF +++
Sbjct: 127 GPQISKLGKGVDILVATPGRLLDLYNQGA---VNFNQLEVLVLDEADRMLDMGFIHDIKK 183
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + LP RQ L+FSAT + D++ L + N T ++++Q + + K
Sbjct: 184 ILRALPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQK 243
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
L+H++ K D + ++F T + ++ LE D A A+H KSQ R AL
Sbjct: 244 TAALIHLI-KQNDW--QQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALA 300
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FKSG +L+ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG G AVS V
Sbjct: 301 NFKSGLVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 360
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECK 433
+ ++ L+ +IE ++ K + E +
Sbjct: 361 SADESKLLRDIERLIKKNIPRKEVE 385
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/369 (41%), Positives = 208/369 (56%), Gaps = 6/369 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TF L L+ +Q KE+G PTP+Q IP +L G DV+G AQTG+GKTAAF +PI
Sbjct: 4 TKTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPI 63
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L +L V ALVITPTRELA Q+AE+ LG +R V GG + Q +L
Sbjct: 64 LEKLNPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRG 123
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
VV+ TPGR LL+ K LVLDEAD +LD+GF +++ + + P+ RQ
Sbjct: 124 VQVVVGTPGR---LLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQ 180
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSATM ++Q L + TV +++Q Y + + K L VL
Sbjct: 181 TLLFSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEVREKTKLESLCRVL-- 238
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E + + AIIF T R L LE +A LH +Q+QR + +FK+GQ L
Sbjct: 239 -ETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYL 297
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDI V V+NYDIP+ P YVHR+GRT RAGR G A++F+ + +
Sbjct: 298 VATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRL 357
Query: 419 IEAVVGKQL 427
IE ++G ++
Sbjct: 358 IEKIIGARI 366
>gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis
Bu]
Length = 481
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 216/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL + ++ ++L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIDPLLRNVQDLDYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRLLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT + D++ + T +KQ + + K K MH
Sbjct: 178 AQRQTLLFSATFSDDIRAMAAGILRGPVKISVSPPNATAGKIKQWVVPVDKRNKPDLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ + + A++FV T + L+ +L+E +H K Q RL AL RFK+G+
Sbjct: 238 LVAEND---WKHALVFVKTRKGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VHMLVATDVAARGLDINGLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLPREE 371
>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica URFT1]
gi|423050934|ref|YP_007009368.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951656|gb|AFX70905.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
Length = 441
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 227/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R V+ GG+ Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---VKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT +S+++ L N F A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+ DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++ KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSHKNKAKKIDEVKII 400
>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
Length = 483
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/377 (40%), Positives = 218/377 (57%), Gaps = 13/377 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGLAE V+ ELG PTP+QT IP +L G D+L AQTG+GKTA F LPIL
Sbjct: 1 MSFASLGLAEPLVRAVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60
Query: 120 HRL-------AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172
RL A V AL++TPTRELA Q+ E +A G L LR V+ GG+ + Q
Sbjct: 61 QRLNAFQPANANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQI 120
Query: 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
+L +V+ATPGR LL+ S+ LVLDEADR+LD+GF +++ V
Sbjct: 121 DALKRGVDIVVATPGR---LLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAK 177
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
LP RQ LLFSAT + +++ L + + E T ET+ Q+ + ++ K L
Sbjct: 178 LPAKRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKREML 237
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
H++ + + ++F T + L+ L + A+A+H KSQS R AL FK+
Sbjct: 238 THLIREHNWFQV---LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKA 294
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G +L+ATD+A+RG+DI + V+NY++P P DYVHR+GRT RAG G AVS V ++
Sbjct: 295 GTLQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDE 354
Query: 413 VDLIHEIEAVVGKQLEE 429
L+ +IE ++ +++ +
Sbjct: 355 KPLLRDIERLIKREIPQ 371
>gi|410632428|ref|ZP_11343087.1| DEAD-box ATP-dependent RNA helicase 52C [Glaciecola arctica
BSs20135]
gi|410147992|dbj|GAC19954.1| DEAD-box ATP-dependent RNA helicase 52C [Glaciecola arctica
BSs20135]
Length = 419
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/430 (35%), Positives = 243/430 (56%), Gaps = 21/430 (4%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL E ++T E G +P+P+Q IP +L G+DV+ +A TG+GKTA F LP++
Sbjct: 1 MSFGALGLCEELLKTVAEQGYTKPSPIQIKAIPAVLSGRDVMAVANTGTGKTAGFTLPVV 60
Query: 120 HRLAEDPY---------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
L+ V ALVITPTRELA Q+A+ K +++R V GG+ +
Sbjct: 61 QLLSGGANMDAPTLQAKCVRALVITPTRELAAQVADNVKNYSRRMNIRSVAVFGGVRIEP 120
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q L V++ATPGR+ L + F + + LVLDEADR+LD+GF +++ +
Sbjct: 121 QIAELQAGVDVLVATPGRLLDLYNQQA---INFDQLEILVLDEADRMLDLGFIDDIHHIQ 177
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
+ LPK RQTL+FSAT ++++++L N + TVE +KQ+ + K+ K
Sbjct: 178 KLLPKTRQTLMFSATFSNEIKSLARGMLNSPLLIDVAAANSTVEKVKQKLHPVDKSRKGE 237
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L+H++ K + R ++F T + L +LE+ A ++H+ ++Q R AL F
Sbjct: 238 MLIHLIKKNK---WRQVLVFSRTKQGADSLVAVLEKAGISAASIHANRTQHARTLALDGF 294
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G IL+ATD+ASRG+D+ + V+N+D+P P DYVHR+GRT RAG GLA+S ++
Sbjct: 295 KNGNVKILVATDIASRGIDVNQLPCVVNFDLPYVPEDYVHRIGRTGRAGTFGLAISLFSE 354
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
++ + IEA++G++ E+E++S +A + + + FE AK ++
Sbjct: 355 DESKQLKSIEALIGRKF------EREIISGFAPNKQAETGSADEDLYGNFEADAKPLRRG 408
Query: 471 KLKMLAEKGS 480
+ K +G
Sbjct: 409 QSKGRGRRGG 418
>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
Length = 582
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 218/380 (57%), Gaps = 14/380 (3%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S+++FA L L + ++ E G PTP+Q I +L G+D++ AQTG+GKTA FALP
Sbjct: 2 SSISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALP 61
Query: 118 ILHRLA-----EDPYG-VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
+L RLA P G LV+TPTRELA Q+ E LG+ L L V+ GG+ + Q
Sbjct: 62 LLQRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQ 121
Query: 172 AKSLMNRPHVVIATPGR-IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
++L R ++IATPGR I + +E D+ S + LVLDEADR+LD+GF ++R V
Sbjct: 122 IEALTQRVDILIATPGRLIDLAKQEAVDL----SGVEILVLDEADRMLDMGFIRDVRKVL 177
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
+ LP RQ LLFSAT D++ L + + E T E + + +N K
Sbjct: 178 KLLPAERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRE 237
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L H++ E + ++F T + L+ +L + A A+H KSQ R AL F
Sbjct: 238 LLTHLV---ESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEF 294
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K G +L+ATD+A+RG+DI + V+NY++P P DYVHR+GRT RAG G AVS V
Sbjct: 295 KDGSLRVLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCV 354
Query: 411 NDVDLIHEIEAVVGKQLEEF 430
+++ L+ +IEA +G+ + +F
Sbjct: 355 DELKLLADIEAFIGRPIPQF 374
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 169/442 (38%), Positives = 252/442 (57%), Gaps = 36/442 (8%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
TT F L L+ + C+ LG ++PTP+Q IP + G+DV G A TGSGKTAAF
Sbjct: 143 TTFDAKAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAF 202
Query: 115 ALP----ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
LP +LHR LV+ PTRELA Q+ + ++L +R +VVGG+
Sbjct: 203 MLPQLERMLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANV 262
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF-------LVLDEADRVLDVGFE 223
QA +L RP +V+ATPGR+ I V + F L+LDEADR+L++GF
Sbjct: 263 QAAALRTRPEIVVATPGRV---------IDHVRNTHSFGLEDLATLILDEADRLLEMGFL 313
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFI 283
EE++ + + PK RQTLLFSAT+T+ ++ L LS A T + L ++ + +
Sbjct: 314 EEIKEIVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKL 373
Query: 284 PKNV---KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
N K+ +LM ++S+ D +S IIF T + H L +++ D +A LH +Q
Sbjct: 374 KPNQSAQKEAFLMAIVSRSYD---KSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQ 430
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
+QRL+AL F++G T L+ATDVA+RGLDIP+VD V+++D P+ Y+HRVGRTARAG+
Sbjct: 431 TQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGK 490
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATM--KLMDD 458
G A++F+ ++D L+ I A G L K + V +I + +++ M +++
Sbjct: 491 KGTALTFMEESDRKLVKTI-AKRGANL-----KARIVPGNIVAEWH-KKIEDMEEQIVQI 543
Query: 459 GFEEKAKERKKQKLKMLAEKGS 480
+EE+ ER+ QK +M A K S
Sbjct: 544 NYEERT-ERQLQKAEMEANKAS 564
>gi|424834031|ref|ZP_18258749.1| ATP-dependent RNA helicase RhlE [Clostridium sporogenes PA 3679]
gi|365979266|gb|EHN15331.1| ATP-dependent RNA helicase RhlE [Clostridium sporogenes PA 3679]
Length = 425
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 221/373 (59%), Gaps = 14/373 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L + + + KE G ++ TP+Q IP IL+GKD++G AQTG+GKTAAFA+P+L
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++D P + ALV+ PTRELA Q+ E F+ G ++L+ V+ GG+ Q K+L
Sbjct: 63 LSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKAL 122
Query: 176 MNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
++IATPGR+ L + D+ + + VLDEADR+LD+G +++ + LP
Sbjct: 123 REGVDILIATPGRMLDLFNQKYIDLRNI----ECFVLDEADRMLDMGMIHDVKKIISKLP 178
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
K RQ LLFSATM S++ L++ E TV+T+ Q+ + K K L H
Sbjct: 179 KVRQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKH 238
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L +D I SA++F +T R ++++ L E EA A+H KSQ+ R AL+ FK G
Sbjct: 239 LL---KDESIDSALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGN 295
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 296 IRVLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETK 355
Query: 415 LIHEIEAVVGKQL 427
+ IE ++ K++
Sbjct: 356 SLKAIEKLIHKEI 368
>gi|421863783|ref|ZP_16295476.1| ATP-dependent RNA helicase PA3950 [Burkholderia cenocepacia H111]
gi|358076109|emb|CCE46354.1| ATP-dependent RNA helicase PA3950 [Burkholderia cenocepacia H111]
Length = 484
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 215/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL E ++ + L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT + +++T+ T +KQ + + K K MH
Sbjct: 178 AKRQTLLFSATFSDEIRTMAAGILRNPVDISVSAPNATASKIKQWVVTVDKRNKPGLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ + A++FV T L+++LE+ +H K Q RL AL RFK+G+
Sbjct: 238 LVAQNK---WEHALVFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLRREE 371
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 248/449 (55%), Gaps = 50/449 (11%)
Query: 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114
TT F L L+ + C+ LG ++PTP+Q IP + G+DV G A TGSGKTAAF
Sbjct: 143 TTFDAKAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAF 202
Query: 115 ALP----ILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
LP +LHR LV+ PTRELA Q+ + ++L +R +VVGG+
Sbjct: 203 MLPQLERMLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANV 262
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF-------LVLDEADRVLDVGFE 223
QA +L RP +V+ATPGR+ I V + F L+LDEADR+L++GF
Sbjct: 263 QAAALRTRPEIVVATPGRV---------IDHVRNTHSFGLEDLATLILDEADRLLEMGFL 313
Query: 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFI 283
EE++ + + PK RQTLLFSAT+T+ ++ L LS A T + L ++ + +
Sbjct: 314 EEIKEIVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKL 373
Query: 284 PKNV---KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
N K+ +LM ++S+ D +S IIF T + H L +++ D +A LH +Q
Sbjct: 374 KPNQSAQKEAFLMAIVSRSYD---KSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQ 430
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
+QRL+AL F++G T L+ATDVA+RGLDIP+VD V+++D P+ Y+HRVGRTARAG+
Sbjct: 431 TQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGK 490
Query: 401 GGLAVSFVTQNDVDLIHEI---------EAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
G A++F+ ++D L+ I V G + E+ K +++ I ++
Sbjct: 491 KGTALTFMEESDRKLVKTIAKRGANLKARIVPGNIVAEWHKKIEDMEEQIVQI------- 543
Query: 452 TMKLMDDGFEEKAKERKKQKLKMLAEKGS 480
+EE+ ER+ QK +M A K S
Sbjct: 544 -------NYEERT-ERQLQKAEMEANKAS 564
>gi|393722521|ref|ZP_10342448.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26605]
Length = 426
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 213/375 (56%), Gaps = 13/375 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T TFA L LA ++ E G PTP+Q IP +LEG+D+LG+AQTG+GKTAAFALP+
Sbjct: 2 TQTFADLALAPRLLRALDEQGYTTPTPIQAQSIPLLLEGRDMLGMAQTGTGKTAAFALPL 61
Query: 119 LHRLAEDP-----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
LHRLA +P +G LV+ PTREL Q+A F++ G + LR + GG+ Q
Sbjct: 62 LHRLAANPRPAPKHGARVLVLAPTRELVSQIAAGFESFGRHMPLRVATIFGGVSQFHQVN 121
Query: 174 SLMNRPHVVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
+L +++A PGR+ L+E+ D+ S + LVLDEAD++LD+GF + + +
Sbjct: 122 ALDAGVDIIVAAPGRLLDLIEQGLCDL----SALEALVLDEADQMLDMGFAKPIERLVAT 177
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
LPK+R TLLFSATM + L E E TV+ + Q +F+ K L
Sbjct: 178 LPKDRHTLLFSATMPKAITALAESLLRDPAHVEIAPPSTTVDRIAQSVMFLDAAHKKAAL 237
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+ +L E I A++F + + + E A ALH KSQ QR AL F++
Sbjct: 238 LELLRTPE---IGQAVVFTLQKNIANEVCAFISEAGITAEALHGNKSQGQRERALDAFRA 294
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G +L+ATD+A+RG+D+ TV V N+D+P P YVHR+GRT RAGR G A++
Sbjct: 295 GDVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGFAITLCDAEQ 354
Query: 413 VDLIHEIEAVVGKQL 427
+H++E +G+ L
Sbjct: 355 RAWLHDVEREIGRPL 369
>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 523
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 214/376 (56%), Gaps = 10/376 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+E ++ + G +P+P+Q +P +L GKDV+ AQTG+GKTA F LPIL
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 120 HRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ P V ALV+TPTRELA Q+ G L L VV GG+ + Q + L
Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAV---RFDQLEILVLDEADRMLDMGFIRDIRKILAFLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT + D+++L + N T T++Q + K K L +
Sbjct: 178 KRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ +D R ++F T + L+ LEE D + +H KSQ R AL FK+G+
Sbjct: 238 I---KDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DIP + V+N+D+P DYVHR+GRT RAG G A+S V ++V
Sbjct: 295 RVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGE 354
Query: 416 IHEIEAVVGKQLEEFE 431
+ IE ++ + LE E
Sbjct: 355 LFGIERLIQQVLERRE 370
>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
Length = 523
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 214/376 (56%), Gaps = 10/376 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+E ++ + G +P+P+Q +P +L GKDV+ AQTG+GKTA F LPIL
Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 120 HRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ P V ALV+TPTRELA Q+ G L L VV GG+ + Q + L
Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAV---RFDQLEILVLDEADRMLDMGFIRDIRKILAFLPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ LLFSAT + D+++L + N T T++Q + K K L +
Sbjct: 178 KRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ +D R ++F T + L+ LEE D + +H KSQ R AL FK+G+
Sbjct: 238 I---KDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+DIP + V+N+D+P DYVHR+GRT RAG G A+S V ++V
Sbjct: 295 RVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGE 354
Query: 416 IHEIEAVVGKQLEEFE 431
+ IE ++ + LE E
Sbjct: 355 LFGIERLIQQVLERRE 370
>gi|354807813|ref|ZP_09041268.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
gi|354513709|gb|EHE85701.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
Length = 523
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 233/419 (55%), Gaps = 24/419 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+E ++ + G TP+Q IP L GKDV+G AQTG+GKTAAF LPIL
Sbjct: 3 FAELGLSEPIMKAIERAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L D + AL+I+PTRELA Q E+ LG + +VV GG D+ Q +SL + P +
Sbjct: 63 LDLDNPNIQALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIRSLKDHPQI 122
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR LL+ K LVLDEAD +LD+GF +++ + + +P RQTLL
Sbjct: 123 LVGTPGR---LLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPDQRQTLL 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSAT+ + + + + + T + + Q Y+ KD +++++ D
Sbjct: 180 FSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYV----RAKDFEKFDIMTRLFD 235
Query: 302 M-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ +IF T R L+ L+ A +H SQ +R+S L FK+G+ IL+A
Sbjct: 236 VQSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDILVA 295
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDI V V NYDIP+ P YVHR+GRT RAG+ G++V+FVT N+++ +H IE
Sbjct: 296 TDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEYLHIIE 355
Query: 421 AVVGKQL---------EEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
+ K++ E F+ + ++DI + + ++A F E+A+E KQ
Sbjct: 356 NLTKKRMLPLQPPTEKEAFKGQLAAAVADINSMIEKGQLAK-------FSEEAEELLKQ 407
>gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 399
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 218/369 (59%), Gaps = 11/369 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F L E + G ++PTP+Q CIP ++ G D+LG+AQTG+GKTAAF+LPI+++
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 122 LAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
+ + A L++TPTRELA Q+ + GL L+ +VV GG+ Q S+
Sbjct: 64 FGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIE 123
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+++ATPGR+ L+E DI F + VLDEAD +LD+GF ++++ + LPK+
Sbjct: 124 LGLDILVATPGRLLDLIETG-DIN--FKALEVFVLDEADTMLDMGFFKDVQSIISKLPKS 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTLLFSATM ++++ L E + T++ + Q + K+ K L ++L
Sbjct: 181 RQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNIL 240
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+K + +IF T ++ LE+ A +LHS K+Q+ R AL FK
Sbjct: 241 TKAD---YEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLR 297
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATDVA+RG+D+ + LV+NY++P PR+Y+HR+GRTARAG+ G+A+SF +ND+ +
Sbjct: 298 VLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQL 357
Query: 417 HEIEAVVGK 425
IE +G+
Sbjct: 358 TNIENSIGQ 366
>gi|365926646|ref|ZP_09449409.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420264912|ref|ZP_14767511.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394429548|gb|EJF01976.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 503
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 217/380 (57%), Gaps = 9/380 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+E ++ G TP+Q IP +L+G+DV+G AQTG+GKTAAF LPIL++
Sbjct: 3 FTELGLSENILKAINRSGFEEATPIQAETIPLVLKGEDVIGQAQTGTGKTAAFGLPILNK 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+ + A++++PTRELA Q E+ LG H + +VV GG D+ Q SL P +
Sbjct: 63 IDTKKNEIQAVIVSPTRELAIQTQEELYRLGRDEHAKVQVVYGGADIRRQINSLKKAPQI 122
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR LL+ +VLDEAD +LD+GF E++ + + +P+ RQTLL
Sbjct: 123 LVGTPGR---LLDHIRRRTVKLDSVNVMVLDEADEMLDMGFVEDIESIIKAVPEKRQTLL 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATM + + E +K + T + + Q Y+ +D V++++ D
Sbjct: 180 FSATMPPAILKIGEKFMHKPSVVKIKAKELTTDLVDQYYV----RARDFEKFDVMTRIFD 235
Query: 302 M-GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ I+F T R LS LE A +H SQ +R+S L +FK+G+ IL+A
Sbjct: 236 VQAPELTIVFGRTKRRVDELSKGLEARGYNAKGIHGDLSQQRRMSILKQFKAGKLDILVA 295
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDI V V NYDIP+ P YVHR+GRT RAG G++V+FVT N++D + IE
Sbjct: 296 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGVSVTFVTPNEMDYLRVIE 355
Query: 421 AVVGKQLEEFE-CKEQEVLS 439
+ K++ + EQE +
Sbjct: 356 KLTKKRMSNLKPPTEQEAFN 375
>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
gi|416877267|ref|ZP_11919721.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
gi|334839751|gb|EGM18425.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
Length = 449
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++ + LG PTP+Q IP L+G+D+L AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 120 HRLA-EDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL E P V ALV+ PTRELA Q+ + G L LR V GG+ + Q
Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EL +F LP
Sbjct: 121 LRKGGDILVATPGRLLDLYRQNAV---KFAQLQALVLDEADRMLDLGFARELDELFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT + ++TL E ++++Q + + K K H
Sbjct: 178 RKRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L R A++F T +S L LL+ A ++H K Q RL AL RFK+G+
Sbjct: 238 LLQTNR---WRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N+D+P DYVHR+GRT RAG G AVS V ++V+
Sbjct: 295 VDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVE 354
Query: 415 LIHEIEAVVGKQLEEFE 431
L+ IE ++G+ L+ E
Sbjct: 355 LLAAIETLIGQTLQRRE 371
>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
Length = 443
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/384 (38%), Positives = 220/384 (57%), Gaps = 14/384 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL+E V+ + G P+P+Q IP +L GKDV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAEDPY---GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
RLAE+P G AL++TPTRELA Q+ + + + VV GG+ + Q L
Sbjct: 61 QRLAENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLR 120
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
V++ATPGR+ L +++ F+ + LVLDEADR+LD+GF ++R + LP
Sbjct: 121 KGLDVLVATPGRLMDLYQQNA---VRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAK 177
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQ LLFSAT +++++TL + + E T E +KQ + ++ K L ++
Sbjct: 178 RQNLLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLV 237
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
D ++F T + L+ LE+ A A+H KSQ R AL FK+G+
Sbjct: 238 ---RDNAWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVR 294
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATD+A+RGLDI + V+N+++P P DYVHR+GRT RAG G A+S V+ ++ L+
Sbjct: 295 VLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLL 354
Query: 417 HEIEAVVGKQL-----EEFECKEQ 435
IE ++ KQL E FE K
Sbjct: 355 AGIEKLIKKQLPRKEVEGFEPKNN 378
>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 485
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 223/376 (59%), Gaps = 19/376 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ L L + ++ E G PTP+Q IP +L +D+LG AQTG+GKTAAFA+PIL
Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62
Query: 122 LAED-------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
L+E+ P + L++TPTRELA Q+AE F A G L++R V+ GG+ +Q +
Sbjct: 63 LSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNT 122
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V+IATPGR+ L+ + +F VLDEADR+LD+GF +++ V LP
Sbjct: 123 LKAGVDVLIATPGRLLDLMNQGF---ISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLP 179
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+RQ+L FSATM D+ L + N E T +T++Q F+ K K L+H
Sbjct: 180 THRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVH 239
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV---ALHSFKSQSQRLSALHRFK 351
+L +D I+SA++F R+ H ++++L + + A+H KSQ+ R AL FK
Sbjct: 240 IL---DDKNIKSALVF---ARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFK 293
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
S + +L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF
Sbjct: 294 SRETRVLVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAE 353
Query: 412 DVDLIHEIEAVVGKQL 427
+ + + +I ++GK++
Sbjct: 354 ETEYLRDIHKLIGKRV 369
>gi|448820186|ref|YP_007413348.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
gi|448273683|gb|AGE38202.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
Length = 528
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 214/367 (58%), Gaps = 8/367 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++ ++ G TP+Q IP +LEGKDV+G AQTG+GKTAAFALPIL R
Sbjct: 3 FTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L D + + ALV++PTRELA Q E+ LG + +VV GG D+ Q ++L P V
Sbjct: 63 LDFDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNPQV 122
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR LL+ K LVLDEAD +L++GF E++ + + +P RQT+L
Sbjct: 123 IVGTPGR---LLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTML 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATM +++ + + + + T +T+ Q Y+ K+ +++++ D
Sbjct: 180 FSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYV----KAKEFEKFDIMTRLFD 235
Query: 302 MGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ I+F T R LS LE A +H SQ +R + +FK+G+ IL+A
Sbjct: 236 VQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVA 295
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLD+ V V NYDIP+ P YVHR+GRT RAG G++++FVT N+++ + IE
Sbjct: 296 TDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIE 355
Query: 421 AVVGKQL 427
+ K++
Sbjct: 356 KLTKKRM 362
>gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031534|ref|YP_004888525.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|418274186|ref|ZP_12889684.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240777|emb|CCC78011.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|376009752|gb|EHS83078.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 528
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 214/367 (58%), Gaps = 8/367 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++ ++ G TP+Q IP +LEGKDV+G AQTG+GKTAAFALPIL R
Sbjct: 3 FTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L D + + ALV++PTRELA Q E+ LG + +VV GG D+ Q ++L P V
Sbjct: 63 LDFDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNPQV 122
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
++ TPGR LL+ K LVLDEAD +L++GF E++ + + +P RQT+L
Sbjct: 123 IVGTPGR---LLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTML 179
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301
FSATM +++ + + + + T +T+ Q Y+ K+ +++++ D
Sbjct: 180 FSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYV----KAKEFEKFDIMTRLFD 235
Query: 302 MGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ I+F T R LS LE A +H SQ +R + +FK+G+ IL+A
Sbjct: 236 VQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVA 295
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLD+ V V NYDIP+ P YVHR+GRT RAG G++++FVT N+++ + IE
Sbjct: 296 TDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIE 355
Query: 421 AVVGKQL 427
+ K++
Sbjct: 356 KLTKKRM 362
>gi|392967075|ref|ZP_10332493.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
gi|387843872|emb|CCH54541.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
Length = 421
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 213/372 (57%), Gaps = 12/372 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ L L + E G PTP+Q IP +L +D+LG AQTG+GKTAAFA+PIL
Sbjct: 3 FSELPLISPILTALSEEGYTNPTPIQEQAIPPLLSRRDLLGCAQTGTGKTAAFAIPILQL 62
Query: 122 LAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L ED P + AL++TPTRELA Q+ E F A G L++R V+ GG+ Q +L
Sbjct: 63 LHEDRKQQQGPRRIRALILTPTRELAIQIGESFAAYGRHLNVRHTVIFGGVSQHAQVNAL 122
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V+IATPGR+ L+ + VLDEADR+LD+GF +++ V LP
Sbjct: 123 KSGIDVLIATPGRLLDLMNQGFI---SLRNIDLFVLDEADRMLDMGFIHDVKKVIVKLPT 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ+L FSATM D+ L + NK E T +T++Q F+ KN K L+HV
Sbjct: 180 QRQSLFFSATMPPDVAKLADSILNKPVKVEVTPVSSTADTIQQSVYFVDKNDKRKLLVHV 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
L+ D I SA++F T ++ L + +A A+H KSQ+ R AL FKS Q
Sbjct: 240 LN---DKRIASALVFARTKHGADKVAKDLVKAGIKAEAIHGNKSQNARQRALSNFKSRQT 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RG+D+ + V+NY++P P YVHR+GRT RAG G+A+SF +
Sbjct: 297 RVLVATDIAARGIDVEELSHVINYELPNVPETYVHRIGRTGRAGHNGIALSFCDAEETAY 356
Query: 416 IHEIEAVVGKQL 427
+ +I ++GK +
Sbjct: 357 LKDIHKLIGKHV 368
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 223/383 (58%), Gaps = 13/383 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL+ + T + G +PTPVQ IP +L+G D+LG+AQTG+GKTAAFALPIL
Sbjct: 4 FSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQH 63
Query: 122 LAED-----PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
L + P V AL+++PTRELA Q+AE FK G+ L+ + GG+ Q K+L+
Sbjct: 64 LLSNRKMPSPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALL 123
Query: 177 NRPHVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
V++ TPGR+ +E+ D+ S+ + VLDEAD++LD+GF + +R V LPK
Sbjct: 124 GGLDVLVCTPGRLIDHIEQKTVDL----SQVECFVLDEADQMLDLGFVKPIRQVASRLPK 179
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L FSATM ++ L E T E + QQ +FI K L +
Sbjct: 180 KRQNLFFSATMPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQRKRALLSEM 239
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ D + ++F T RS ++ L+ EA A+H K+QSQR AL F++G+
Sbjct: 240 YA---DAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKV 296
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
L+ATD+A+RG+D+ V V+NY++P YVHR+GRTARAG+ G++++ ++ L
Sbjct: 297 RALVATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRL 356
Query: 416 IHEIEAVVGKQLEEFECKEQEVL 438
+ +IE V +++ F+ ++ + L
Sbjct: 357 LKDIERVTRQRIPSFDRRKDQAL 379
>gi|354584019|ref|ZP_09002916.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353197281|gb|EHB62774.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 490
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 228/386 (59%), Gaps = 28/386 (7%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L ++ ++ + + PTP+Q IP +L G+D+LG AQTG+GKTAAF++P++
Sbjct: 1 MTFQDLNISPIILKALAKENYKTPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 60
Query: 120 HRLAEDP------YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
L E P + ALV++PTRELA Q+++ KA LR +VGG+ TQ +
Sbjct: 61 QLLNEQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 120
Query: 174 SLMNRPHVVIATPGR-IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232
+L ++IATPGR I ++ ++ D+ V + LVLDEADR+LD+GF +++ +
Sbjct: 121 ALQQGADILIATPGRLIDLINQKHVDLQHV----EILVLDEADRMLDMGFIHDVKRIIAK 176
Query: 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
+P +QTL FSATM S++ L++ + E T E + V+ VYL
Sbjct: 177 MPSKKQTLFFSATMPSEITQLVKTLLHNPVKVEITPVSSTAERI----------VQSVYL 226
Query: 293 MHVLSK-------MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
+ SK ++D I SA++F T R ++ L +++ A A+H KSQ+ R +
Sbjct: 227 LETGSKQKQLNELLKDPSIASALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQN 286
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
AL+ FKSG+ +L+ATD+A+RG+DI + V+N+++P P YVHR+GRT RAG G A+
Sbjct: 287 ALNNFKSGETRVLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAI 346
Query: 406 SFVTQNDVDLIHEIEAVVGKQLEEFE 431
SF ++V L+ +IE ++GK + E +
Sbjct: 347 SFCEVDEVPLLRDIEKLIGKSIPEVK 372
>gi|30683736|ref|NP_193396.3| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
gi|75338927|sp|Q9ZRZ8.1|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
Length = 789
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/398 (39%), Positives = 222/398 (55%), Gaps = 11/398 (2%)
Query: 49 PDPNSTTTDSTV----TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLA 104
P P +T D TF L L+ ++ C+ LG ++PTP+Q CIP L G+D+ A
Sbjct: 152 PKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211
Query: 105 QTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEV 161
TGSGKTAAFALP L RL P V A L++TPTRELA Q+ + L ++C +
Sbjct: 212 ITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGL 271
Query: 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG 221
+VGG+ + Q L + P +V+ATPGR+ L + L+LDEADR+L G
Sbjct: 272 IVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVD--LDDLAVLILDEADRLLQTG 329
Query: 222 FEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYI 281
F E+ + + PK RQT+LFSATMT +++ L++LS NK A + L ++ +
Sbjct: 330 FATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVV 389
Query: 282 FIPKNVKDVYLMHVLSKMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340
I + ++ VL + +S IIF T ++ H L +L +A LH +Q
Sbjct: 390 RI-RRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQ 448
Query: 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400
+QRL +L F+ + L+ATDVA+RGLDI V V+NY PR YVHRVGRTARAGR
Sbjct: 449 AQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGR 508
Query: 401 GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
G AV+FVT +D L+ I VG +L+ EQ ++
Sbjct: 509 EGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIV 546
>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 437
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 217/373 (58%), Gaps = 11/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL ++ +E G PTP+Q IP+I+ G D++G+AQTG+GKTAAF LPIL
Sbjct: 1 MSFRTLGLDANILKAVQEAGYTEPTPIQAAAIPQIIAGHDLIGIAQTGTGKTAAFVLPIL 60
Query: 120 HRLA-----EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
+LA + G+ ALV+ PTREL Q+ E +A L L+ V GG+ Q ++
Sbjct: 61 AKLAGMKREANQRGIRALVVAPTRELVVQIEENVRAYSKHLPLKVATVFGGVGEHPQIQA 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L + +VIATPGR+ L++ FS FLVLDEADR+LD+GF +R + + LP
Sbjct: 121 LRSGVDMVIATPGRLLDLMDRRHGD---FSGINFLVLDEADRMLDMGFLPSIRQIVKALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT++ +++ L + + ET+ Q +PK++K L+H
Sbjct: 178 RKRQTLLFSATLSREIEGLTHEFQHAPKTVQIGRRSNPAETVTQLVYEVPKHLKPALLVH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L D + ++F S ++ LE + LHS +SQ+QRL AL FKSG
Sbjct: 238 LL---RDPSMDMVLVFSRMKHSADRIARNLENKGIKTATLHSNRSQNQRLRALKDFKSGA 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATD+A+RG+D+ + V+NYD P + DYVHR+GRT RA G A+SFVT D
Sbjct: 295 VRVLVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFVTSEDHG 354
Query: 415 LIHEIEAVVGKQL 427
+ +E +G+ +
Sbjct: 355 TLRSLERFIGRGI 367
>gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 445
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 233/419 (55%), Gaps = 15/419 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P + L++TPTRELA Q+ EQ + + H+R VV GG+ + Q L
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---LKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT + ++ +L + A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
IE ++G ++LE FE ++ ++R KA+++ +K++ K + QK
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSRKTKAKKIDEVKIIATKRANKNNKNTSQK 415
>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
J2315]
gi|444357064|ref|ZP_21158648.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444373030|ref|ZP_21172445.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
J2315]
gi|443592438|gb|ELT61240.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|443606699|gb|ELT74462.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
Length = 484
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 214/377 (56%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL E + + L + PTPVQ IP +L GKDV+ AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIEPLLHNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT + +++T+ T +KQ + + K K MH
Sbjct: 178 AKRQTLLFSATFSDEIRTMAAGILRNPVDISVSAPNATASKIKQWVVTVDKRNKPGLFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ + A++FV T L+++LE+ +H K Q RL AL RFK+G+
Sbjct: 238 LVAQNK---WEHALVFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLRREE 371
>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384412590|ref|YP_005621955.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932964|gb|AEH63504.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 458
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 151/388 (38%), Positives = 217/388 (55%), Gaps = 10/388 (2%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T+++V+F LGL VQ LG +PTP+Q IP +LEGKD+ G+AQTG+GKTAAFA
Sbjct: 2 TETSVSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFA 61
Query: 116 LPILHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170
LP +H LA +P G L+++PTRELA Q+A L + V GG+ +
Sbjct: 62 LPSIHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGR 121
Query: 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF 230
Q + L +++ATPGR+ L+++ V + VLDEAD++LD+GF LR +
Sbjct: 122 QMRMLDRGTDILVATPGRLLDLIDQRA---LVLKDVEVFVLDEADQMLDLGFIHALRRID 178
Query: 231 QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290
+ LPKNRQTL FSATM +Q L + T E ++Q IF+ ++ K
Sbjct: 179 KLLPKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQA 238
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
L L G+ A++F T + LE A A+H KSQ QR AL+ F
Sbjct: 239 LLTITLKNTP--GLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAF 296
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
++G+ IL+ATD+A+RG+D+P V V NY++P YVHR+GRTARAGR G A+SF+
Sbjct: 297 RNGRLKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIAN 356
Query: 411 NDVDLIHEIEAVVGKQLEEFECKEQEVL 438
++ + IE + +L+ E V+
Sbjct: 357 DERSYLRSIERLTRVKLQILPLPENFVM 384
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 218/380 (57%), Gaps = 17/380 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+ ++ + G P+P+Q IP ++EGKDV+ AQTG+GKTA F LP+L R
Sbjct: 3 FTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 122 LAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L++ V AL++TPTRELA Q+ E + L L +VV GG+ Q + L
Sbjct: 63 LSKGQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF +++ + LPKNR
Sbjct: 123 GVDVLVATPGRLLDLANQNAI---KFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNR 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
Q LLFSAT + +++ L + N T ET++Q + K K VL+
Sbjct: 180 QNLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKK----ARVLT 235
Query: 298 KM-EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
K+ +D + ++F T + L+ LEE + A+H KSQ R AL FKSGQ
Sbjct: 236 KLIKDNDWKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVR 295
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
+L+ATD+A+RGLDI + V+N D+P+ P DYVHR+GRT RAG G A+SFV++++ +
Sbjct: 296 VLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASEL 355
Query: 417 HEIEAVVGK-----QLEEFE 431
IE ++ K LE FE
Sbjct: 356 FAIERLIQKILPRHTLEGFE 375
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 217/373 (58%), Gaps = 10/373 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL+ ++ E G P+P+Q IP +L+G+DV+ AQTG+GKTA F LP+L
Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V LV+TPTRELA Q+AE + G L LR VV GG+ + Q L
Sbjct: 61 ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
+ V++ATPGR+ L + F++ + LVLDEADR+LD+GF ++R + LPK
Sbjct: 121 RHGVDVLVATPGRLMDLYNQKA---VKFNQLEILVLDEADRMLDMGFIRDIRKILAILPK 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT + +++ L + N T+KQ + K K L +
Sbjct: 178 QRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K D + ++F T + L+ LEE +A A+H KSQ+ R AL FK+GQ
Sbjct: 238 I-KQHDW--QQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+L+ATD+A+RGLDI + V+N+D+P P DYVHR+GRT RAG G AVS V+ ++ L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKL 354
Query: 416 IHEIEAVVGKQLE 428
+++IE ++ + L+
Sbjct: 355 LNDIERLINRILD 367
>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 466
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 215/379 (56%), Gaps = 12/379 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+D+ F LGL+E ++ ++ G P+P+Q IP ++ G+DV+ AQTG+GKTA F
Sbjct: 2 SDTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFT 61
Query: 116 LPILHRLAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
LP+L RL+ V AL++TPTRELA Q++E + G L+L VV GG+ +
Sbjct: 62 LPLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKIN 121
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q L V++ATPGR+ L + FS+ + +LDEADR+LD+GF +++ +
Sbjct: 122 PQIARLRQGVDVLVATPGRLLDLYNQRA---VKFSQLEVFILDEADRMLDMGFIRDIKKL 178
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LPK+RQ LLFSAT + +++ L + N T E + Q + K K
Sbjct: 179 MTALPKDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKP 238
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L H++ ++ + ++F T + L+ LE A A+H KSQ R AL
Sbjct: 239 AVLTHLI---KENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAA 295
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK G IL+ATD+A+RG+DI + V+N+D+P P DYVHR+GRTARAG G A+S V
Sbjct: 296 FKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVC 355
Query: 410 QNDVDLIHEIEAVVGKQLE 428
+++DL+ IE V+ + +E
Sbjct: 356 ADELDLLWGIEHVIQQHIE 374
>gi|298207628|ref|YP_003715807.1| ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559]
gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 424
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 214/375 (57%), Gaps = 14/375 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TF L + +++ E G +PT +Q IP IL+G+DVLG AQTG+GKT AFA+PI+
Sbjct: 1 MTFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPII 60
Query: 120 HRLAED------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173
LA D +L+L++TPTRELA Q+ E F A G L+ V+ GG+ Q
Sbjct: 61 QHLANDLENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTN 120
Query: 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233
L + V+IATPGR+ L+++ K+ VLDEADR+LD+GF +++ + L
Sbjct: 121 KLKSGVDVLIATPGRLLDLMDQGY---ISLKDVKYFVLDEADRMLDMGFIHDIKKLLTKL 177
Query: 234 PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKDVYL 292
PKNRQ+L FSATM ++ TL E T ET+ QQY++ K K L
Sbjct: 178 PKNRQSLFFSATMPKNILTLSNQILKNPKKVEVNPVSSTAETI-QQYLYTTNKTNKGDLL 236
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+H+L ED I ++F T L + ++ A+H KSQ+QR AL FK
Sbjct: 237 LHIL---EDPKIDQVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKD 293
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
G +++ATD+A+RG+DI ++ V+NYDIP P YVHR+GR RAG G+A+S +
Sbjct: 294 GNIRVMVATDIAARGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEE 353
Query: 413 VDLIHEIEAVVGKQL 427
+ I +IE ++ +++
Sbjct: 354 IQFIKDIEKLIKQKI 368
>gi|29375434|ref|NP_814588.1| DEAD/DEAH box helicase [Enterococcus faecalis V583]
gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|384512540|ref|YP_005707633.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|422686078|ref|ZP_16744289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|422689795|ref|ZP_16747899.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|422692134|ref|ZP_16750156.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|422694449|ref|ZP_16752440.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|422696585|ref|ZP_16754542.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|422699736|ref|ZP_16757597.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|422703461|ref|ZP_16761283.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|422707307|ref|ZP_16765002.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|422711628|ref|ZP_16768555.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|422713329|ref|ZP_16770079.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|422717645|ref|ZP_16774329.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|422720386|ref|ZP_16777004.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|422722778|ref|ZP_16779327.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|422726299|ref|ZP_16782750.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|422729834|ref|ZP_16786229.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|422731038|ref|ZP_16787419.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|422735346|ref|ZP_16791620.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|422738996|ref|ZP_16794181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|424670976|ref|ZP_18107991.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|424676386|ref|ZP_18113259.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|424679344|ref|ZP_18116169.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|424682393|ref|ZP_18119164.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|424686115|ref|ZP_18122786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|424689249|ref|ZP_18125835.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|424692828|ref|ZP_18129304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|424696170|ref|ZP_18132529.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|424699415|ref|ZP_18135635.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|424703855|ref|ZP_18139979.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|424705957|ref|ZP_18141971.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|424716207|ref|ZP_18145521.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|424719149|ref|ZP_18148371.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|424722510|ref|ZP_18151560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|424726330|ref|ZP_18154998.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|424734532|ref|ZP_18163044.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|424746519|ref|ZP_18174750.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
gi|424757333|ref|ZP_18185087.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis V583]
gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|402356926|gb|EJU91644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|402357040|gb|EJU91755.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|402359536|gb|EJU94161.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|402367689|gb|EJV02027.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|402368059|gb|EJV02386.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|402368986|gb|EJV03284.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|402376373|gb|EJV10318.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|402376784|gb|EJV10706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|402378414|gb|EJV12272.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|402383780|gb|EJV17363.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|402388552|gb|EJV21987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|402388773|gb|EJV22199.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|402397103|gb|EJV30139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|402399841|gb|EJV32699.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|402401968|gb|EJV34706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|402407406|gb|EJV39938.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|402407938|gb|EJV40436.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|402409246|gb|EJV41678.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
Length = 536
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 213/373 (57%), Gaps = 20/373 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA + + G TP+Q+ IP L GKDV+G AQTG+GKTAAF LP+L++
Sbjct: 24 FKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNK 83
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+ D + LVI PTRELA Q E+ LG +R + V GG D+ Q + L +RPH+
Sbjct: 84 IDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHI 143
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ TPGR LL+ + LVLDEAD +L++GF E++ + +P+ RQTLL
Sbjct: 144 VVGTPGR---LLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLL 200
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFK------TVETLKQQYIFIPKNVKDVYLMHV 295
FSATM ++ + F + E K T + + Q Y+ KD +
Sbjct: 201 FSATMPPAIKNI------GVKFMKQPEHVKIKAKEMTADLIDQYYV----RSKDFEKFDI 250
Query: 296 LSKMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ D+ I+F T R L+ LE +A +H SQ +R+S L FK+G
Sbjct: 251 MTRLLDVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGN 310
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ATDVA+RGLDI V V NYDIP+ P YVHR+GRT RAG+GG++V+FVT N++
Sbjct: 311 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 370
Query: 415 LIHEIEAVVGKQL 427
+H IE + K++
Sbjct: 371 YLHVIENLTKKRM 383
>gi|170726099|ref|YP_001760125.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169811446|gb|ACA86030.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 432
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 165/406 (40%), Positives = 229/406 (56%), Gaps = 25/406 (6%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
T + F LGL +Q EL PT +Q+ IP +LEGKD+LG A TGSGKTAAFA
Sbjct: 9 TTNIARFDELGLIPELLQRIAELEYLTPTQIQSQSIPHLLEGKDLLGGANTGSGKTAAFA 68
Query: 116 LPILHRL--AEDPYG----VLALVITPTRELAYQLAEQFKALGSGL--HLRCEVVVGGMD 167
LPIL L + P V ALV+ PTRELA Q+A FK+ GL L+ E V GG+
Sbjct: 69 LPILQHLHVGDKPVAKGNMVRALVLVPTRELAKQVAASFKSYAQGLTPKLKVEAVFGGVS 128
Query: 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227
+ TQ +L V++ATPGR+ LL + S+ LVLDEADR+L +GF EEL
Sbjct: 129 VNTQMLALRGGADVLVATPGRLLDLLSSNA---IKLSQASHLVLDEADRMLSLGFAEELE 185
Query: 228 VVFQCLPKNRQTLLFSATMTSDLQTLLE--LSANKAYFYEAYEGFKTVETLKQQYIFIPK 285
V LPK +QTLLFSAT +++ L + L++ E+ E TL QQ + K
Sbjct: 186 KVLALLPKRKQTLLFSATFPEEVKELTDSLLNSPVELHLESTEE----STLVQQVYTVNK 241
Query: 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLS 345
N K L H+++ + R ++F S +C+ L L + A HS KSQ R
Sbjct: 242 NRKTALLAHLIN---ERNWRQVLVFASAKNTCNRLEQKLAKAGVSAQVFHSDKSQGSRTR 298
Query: 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAV 405
L FKSG+ ++L+ATD+A+RG+DI + +V+NY++PR P DY+HR+GR+ RAG GLA+
Sbjct: 299 VLDGFKSGEISVLIATDIAARGIDIEKLPVVINYELPRSPSDYMHRIGRSGRAGEAGLAL 358
Query: 406 SFVTQNDVDLIHEIEA-----VVGKQLEEFECKEQEVLSDITRVYK 446
S ++ ++ IE +V +Q+ FE E+ L +R K
Sbjct: 359 SLISHDEYQHFKLIEKKNKIRLVREQIVGFEADEEAPLDCPSREIK 404
>gi|451987161|ref|ZP_21935321.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
gi|451755216|emb|CCQ87844.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
Length = 449
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++ + LG PTP+Q IP L+G+D+L AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 120 HRLA-EDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL E P V ALV+ PTRELA Q+ + G L LR V GG+ + Q
Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EL +F LP
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAV---KFAQLQALVLDEADRMLDLGFARELDELFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT + ++TL E ++++Q + + K K H
Sbjct: 178 RKRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L R A++F T +S L LL+ A ++H K Q RL AL RFK+G+
Sbjct: 238 LLQANR---WRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N+D+P DYVHR+GRT RAG G AVS V ++V+
Sbjct: 295 VDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVE 354
Query: 415 LIHEIEAVVGKQLEEFE 431
L+ IE ++G+ L+ E
Sbjct: 355 LLAAIETLIGQTLQRRE 371
>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
Length = 505
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 216/380 (56%), Gaps = 11/380 (2%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+++++FA LGL E ++ + L + PTPVQ IP +L GKDV+ AQTG+GKTA FAL
Sbjct: 20 NTSMSFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFAL 79
Query: 117 PILHRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
P+L RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 80 PLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQ 139
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF
Sbjct: 140 MMKLRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFA 196
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQTLLFSAT + +++ + T +KQ + + K K
Sbjct: 197 ALPAKRQTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDL 256
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
MH++++ A++FV T L+L+LE+ +H K Q RL AL RFK
Sbjct: 257 FMHLVAQNR---WEHALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFK 313
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V +
Sbjct: 314 TGEVQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCAD 373
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
+ + IEA++ + L E
Sbjct: 374 EAPQLAAIEALIRQTLRREE 393
>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
Length = 507
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 216/380 (56%), Gaps = 11/380 (2%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+++++FA LGL E ++ + L + PTPVQ IP +L GKDV+ AQTG+GKTA FAL
Sbjct: 21 NTSMSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFAL 80
Query: 117 PILHRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
P+L RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 81 PLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQ 140
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF
Sbjct: 141 MMKLRKGVDVLVATPGR---LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFA 197
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
LP RQTLLFSAT + +++ + T +KQ + + K K
Sbjct: 198 ALPAKRQTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDL 257
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
MH++++ A++FV T L+L+LE+ +H K Q RL AL RFK
Sbjct: 258 FMHLVAQNR---WERALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFK 314
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+G+ +L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V +
Sbjct: 315 TGEVQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCAD 374
Query: 412 DVDLIHEIEAVVGKQLEEFE 431
+ + IEA++ + L E
Sbjct: 375 EAPQLAAIEALIRQTLRREE 394
>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 488
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 219/379 (57%), Gaps = 14/379 (3%)
Query: 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP 117
S VTF L L+ ++ + G PTP+Q IP IL GKDV+ AQTG+GKTA F LP
Sbjct: 3 SDVTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLP 62
Query: 118 ILHRL------AEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
+LH L + P + V AL++ PTRELA Q+ E + G L LR VV GG+++
Sbjct: 63 LLHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIE 122
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
Q L N +++ATPGR+ L+E FS+T+ LVLDEADR+LD+GF +++ V
Sbjct: 123 PQITELRNGVEILVATPGRLLDLVEHKA---VNFSKTEILVLDEADRMLDMGFLPDIKKV 179
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289
LP RQ+L+FSAT + +++ L + E E++ I K
Sbjct: 180 MALLPSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKF 239
Query: 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349
L+H L K +D+ + A++FV T L+ +L A+A+H K+Q QR AL
Sbjct: 240 ALLLH-LVKQQDL--KQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSE 296
Query: 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409
FK G IL+ATDVA+RG+DI + V+NY++P P DYVHR+GRT RAG G A+S V+
Sbjct: 297 FKHGDVQILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVS 356
Query: 410 QNDVDLIHEIEAVVGKQLE 428
+++ +L+ IE ++ +LE
Sbjct: 357 EHETELLTSIEKLLNTKLE 375
>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 220/382 (57%), Gaps = 15/382 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F+ LGL ++ ++ G P+P+Q IP +L G+DV+ AQTG+GKTA F LPIL
Sbjct: 1 MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL 60
Query: 120 HRLAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
L++ V ALV+TPTRELA Q+ E G L L+ VV GG+ ++ Q +L
Sbjct: 61 ELLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAAL 120
Query: 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235
N +++ATPGR+ L ++ FS+ + LVLDEADR+LD+GF +++ V LP
Sbjct: 121 RNGVDILVATPGRLLDLCQQKAI---SFSKLEILVLDEADRMLDMGFIRDIKKVLALLPA 177
Query: 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
RQ L+FSAT +++++ L + N T T+ Q + K K + L+ +
Sbjct: 178 KRQNLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIEL 237
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ K D + ++F T + L+ LE +A A+H KSQ+ R AL FK+G
Sbjct: 238 I-KTNDW--KQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAV 294
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
+++ATD+A+RG+DI + V+N+D+P P DYVHR+GRT RAG G AVS V +V L
Sbjct: 295 QVMVATDIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKL 354
Query: 416 IHEIEAVVG-----KQLEEFEC 432
+H+IE ++ KQL FE
Sbjct: 355 LHDIERLINRVIERKQLAGFEA 376
>gi|337755348|ref|YP_004647859.1| ATP-dependent RNA helicase RhlE [Francisella sp. TX077308]
gi|336446953|gb|AEI36259.1| ATP-dependent RNA helicase RhlE [Francisella sp. TX077308]
Length = 445
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 230/404 (56%), Gaps = 15/404 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F+ LGL ++ G +PTP+Q IP +L+G DV+ AQTG+GKTA F LPI+ R
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177
L + P V L++TPTRELA Q+ EQ + + H+R VV GG+ + Q L
Sbjct: 63 LLDQPKAQANRVKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRK 122
Query: 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
++IATPGR+ L ++ F VLDEADR+LD+GF +L+ + + LPK
Sbjct: 123 GVEILIATPGRLLDLYSQNA---LKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKL 179
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
QTL+FSAT + +++ L + A TV+ + Q+ + K+ K + ++S
Sbjct: 180 QTLMFSATFSPEIKNLASEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTK---INALIS 236
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++D + ++F T + +S L + + A+H KSQ+ R AL FKS +
Sbjct: 237 LIKDQDLHQVLVFSRTKHGANKISEKLNKASITSSAIHGNKSQTARTKALADFKSKDINV 296
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATD+A+RG+DI + V+N D+P DYVHR+GRT RAG+ GLA+S V+ ++V+ +
Sbjct: 297 LVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLS 356
Query: 418 EIEAVVG-----KQLEEFECKEQEVLSDITRVYKARRVATMKLM 456
IE ++G ++LE FE ++ ++R KA+++ +K++
Sbjct: 357 NIEHLIGHLLPREELEGFEATHNVPITSMSRKTKAKKIDEVKII 400
>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
Length = 536
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 213/373 (57%), Gaps = 20/373 (5%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGLA + + G TP+Q+ IP L GKDV+G AQTG+GKTAAF LP+L++
Sbjct: 24 FKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNK 83
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+ D + LVI PTRELA Q E+ LG +R + V GG D+ Q + L +RPH+
Sbjct: 84 IDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHI 143
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+ TPGR LL+ + LVLDEAD +L++GF E++ + +P+ RQTLL
Sbjct: 144 VVGTPGR---LLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLL 200
Query: 242 FSATMTSDLQTLLELSANKAYFYEAYEGFK------TVETLKQQYIFIPKNVKDVYLMHV 295
FSATM ++ + F + E K T + + Q Y+ KD +
Sbjct: 201 FSATMPPAIKNI------GVKFMKQPEHVKIKAKEMTADLIDQYYV----RSKDFEKFDI 250
Query: 296 LSKMEDMGIRS-AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
++++ D+ I+F T R L+ LE +A +H SQ +R+S L FK+G
Sbjct: 251 MTRLLDVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGN 310
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
IL+ATDVA+RGLDI V V NYDIP+ P YVHR+GRT RAG+GG++V+FVT N++
Sbjct: 311 LDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 370
Query: 415 LIHEIEAVVGKQL 427
+H IE + K++
Sbjct: 371 YLHVIENLTKKRM 383
>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
Length = 461
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 211/377 (55%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++FA LGL E ++ +EL PTPVQ IP +L GKDVL AQTG+GKTA FALP+L
Sbjct: 1 MSFASLGLIEPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLL 60
Query: 120 HRLAEDPYGVLA-----LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL + V + LV+ PTRELA Q+ + F G GL LR GG+ + Q
Sbjct: 61 QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L V++ATPGR LL+ + F + + LVLDEADR+LD+GF EL VF LP
Sbjct: 121 LRKGVDVLVATPGR---LLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLFSAT +++ + ++ T ++Q + + K K MH
Sbjct: 178 TRRQTLLFSATFPDEIRAMAAKRLHEPVQISVSAPNATASRVRQWVVTVDKRNKPELFMH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L+ + G + A++F T L+ LE +H K Q RL AL RFK G+
Sbjct: 238 LLA---EHGWQHALVFARTRAGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N D+P +DYVHR+GRT RAG G+AVS V ++
Sbjct: 295 VRMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354
Query: 415 LIHEIEAVVGKQLEEFE 431
+ IEA++ + L E
Sbjct: 355 QLAAIEALIRQTLRREE 371
>gi|339326719|ref|YP_004686412.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166876|gb|AEI77931.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 520
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 225/402 (55%), Gaps = 15/402 (3%)
Query: 38 AKTTQLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKIL 95
++ T + T P +TT T TF GL ++ E G PTP+Q IP +L
Sbjct: 14 SRQTPIPMTTTNAPEATTAGQTAVQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVL 73
Query: 96 EGKDVLGLAQTGSGKTAAFALPILHRL------AEDP--YGVLALVITPTRELAYQLAEQ 147
GKD++G AQTG+GKTA FALPI+ RL + P + V AL++TPTRELA Q+ +
Sbjct: 74 IGKDMMGAAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDN 133
Query: 148 FKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTK 207
LR VV GG+D+ Q +L +++ATPGR LL+ S+ +
Sbjct: 134 VARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGR---LLDHVQQKSVNLSQVQ 190
Query: 208 FLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267
LVLDEADR+LD+GF +L+ + LP +RQTLLFSAT + +++ L E
Sbjct: 191 MLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSPEIKRLASSYLKHPVTIEVA 250
Query: 268 EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSLLLEE 326
T E ++Q + K ++H+L + + G+ R I+FV++ C L+ LE
Sbjct: 251 RSNSTNENVRQMVYLVEDGHKQAAVVHLLKQRAEQGLSRQCIVFVNSKIGCSRLARHLER 310
Query: 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
A A+H K+Q++R+ L FKSG L+ATDVA+RGLDIP + V+N+D+P
Sbjct: 311 EGINAAAIHGDKTQTERMQTLEGFKSGTIDALVATDVAARGLDIPDMPCVVNFDVPYSAE 370
Query: 387 DYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHEIEAVVGKQL 427
DYVHR+GRT RAG G A+S +V ND L+ +IE ++ + +
Sbjct: 371 DYVHRIGRTGRAGASGDALSIYVPGNDERLLSDIEKLIKRSI 412
>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Ralstonia eutropha H16]
Length = 520
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 225/402 (55%), Gaps = 15/402 (3%)
Query: 38 AKTTQLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKIL 95
++ T + T P +TT T TF GL ++ E G PTP+Q IP +L
Sbjct: 14 SRQTPIPMTTTNAPEATTAGQTAVQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVL 73
Query: 96 EGKDVLGLAQTGSGKTAAFALPILHRL------AEDP--YGVLALVITPTRELAYQLAEQ 147
GKD++G AQTG+GKTA FALPI+ RL + P + V AL++TPTRELA Q+ +
Sbjct: 74 IGKDMMGAAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDN 133
Query: 148 FKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTK 207
LR VV GG+D+ Q +L +++ATPGR LL+ S+ +
Sbjct: 134 VARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGR---LLDHVQQKSVNLSQVQ 190
Query: 208 FLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267
LVLDEADR+LD+GF +L+ + LP +RQTLLFSAT + +++ L E
Sbjct: 191 MLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSPEIKRLASSYLKHPVTIEVA 250
Query: 268 EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGI-RSAIIFVSTCRSCHLLSLLLEE 326
T E ++Q + K ++H+L + + G+ R I+FV++ C L+ LE
Sbjct: 251 RSNSTNENVRQMVYLVEDGHKQAAVVHLLKQRAEQGLSRQCIVFVNSKIGCSRLARHLER 310
Query: 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386
A A+H K+Q++R+ L FKSG L+ATDVA+RGLDIP + V+N+D+P
Sbjct: 311 EGINAAAIHGDKTQTERMQTLEGFKSGTIDALVATDVAARGLDIPDMPCVVNFDVPYSAE 370
Query: 387 DYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHEIEAVVGKQL 427
DYVHR+GRT RAG G A+S +V ND L+ +IE ++ + +
Sbjct: 371 DYVHRIGRTGRAGASGDALSIYVPGNDERLLSDIEKLIKRSI 412
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/383 (39%), Positives = 224/383 (58%), Gaps = 14/383 (3%)
Query: 42 QLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKD 99
++ KF P+ S V F L L+ ++ +LG RP+P+Q+ IP L GKD
Sbjct: 199 EMAKFYAPEAESEQATKQVHNDFNSLSLSRPVLKGLGDLGYTRPSPIQSATIPIALLGKD 258
Query: 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALG---S 153
++ A TGSGKTAAF +PI+ RL P + + +V+TPTRELA Q+++ K LG S
Sbjct: 259 IIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLTPTRELAIQVSDVAKKLGKYVS 318
Query: 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213
GL + VGG++L Q +SL RP +V+ATPGR + + LV+DE
Sbjct: 319 GLTF--GLAVGGLNLRQQEQSLKARPDIVVATPGRFIDHIRNSASFN--VDSVEVLVIDE 374
Query: 214 ADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTV 273
ADR+L+ GF+EEL + LP RQTLLFSATM S ++ L+ L+ + +
Sbjct: 375 ADRMLEEGFQEELNEILSLLPSKRQTLLFSATMNSKIKQLVSLTLKRPVRVMIDPPKQAA 434
Query: 274 ETLKQQYIFIPK--NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEA 331
L Q+++ I K ++K L H++ K++ G + ++FV+ H L ++L L
Sbjct: 435 SKLTQEFVRIRKRDHLKPSVLFHLIKKLDGTGQKRMVVFVARKEMAHRLRIILGLLGISV 494
Query: 332 VALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHR 391
LH SQ QRL ++++FKS + IL+ TD+ASRGLDIP +++V+NYD+P+ Y+HR
Sbjct: 495 GELHGSLSQEQRLQSVNQFKSLEVPILVCTDLASRGLDIPKIEVVINYDMPKNYEVYLHR 554
Query: 392 VGRTARAGRGGLAVSFVTQNDVD 414
VGRTARAGR G +VS V ++ D
Sbjct: 555 VGRTARAGREGRSVSLVGESSQD 577
>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|418587191|ref|ZP_13151225.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418592075|ref|ZP_13155953.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|421152185|ref|ZP_15611773.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|421518498|ref|ZP_15965172.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|375042196|gb|EHS34856.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049103|gb|EHS41612.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|404347980|gb|EJZ74329.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404525815|gb|EKA36064.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 449
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++ + LG PTP+Q IP L+G+D+L AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 120 HRLA-EDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL E P V ALV+ PTRELA Q+ + G L LR V GG+ + Q
Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EL +F LP
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAV---KFAQLQALVLDEADRMLDLGFARELDELFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT + ++TL E ++++Q + + K K H
Sbjct: 178 RKRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L R A++F T +S L LL+ A ++H K Q RL AL RFK+G+
Sbjct: 238 LLQANR---WRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N+D+P DYVHR+GRT RAG G AVS V ++V+
Sbjct: 295 VDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVE 354
Query: 415 LIHEIEAVVGKQLEEFE 431
L+ IE ++G+ L+ E
Sbjct: 355 LLAAIETLIGQTLQRRE 371
>gi|407697074|ref|YP_006821862.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407254412|gb|AFT71519.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 454
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 220/387 (56%), Gaps = 13/387 (3%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL + ++ E G RP+P+Q IP +L G DV+ AQTG+GKTA F LP+L R
Sbjct: 3 FASLGLIDPLLRAVAEQGYDRPSPIQAQAIPAVLGGSDVMAAAQTGTGKTAGFTLPLLQR 62
Query: 122 LAEDPYG----VLALVITPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLM 176
L V ALV+TPTRELA Q+ E G L LR VV GG+++ Q L
Sbjct: 63 LEPGKPAASRQVRALVLTPTRELAAQVGESVAEYGKYLPALRSAVVFGGVNINPQINRLR 122
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
V++ATPGR+ L ++ F + + LVLDEADR+LD+GF ++R V + LPK
Sbjct: 123 GGVDVLVATPGRLLDLYQQKAM---SFDQLEILVLDEADRMLDMGFIHDIRKVLRLLPKQ 179
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
RQTL+FSAT +++++TL + + T E ++Q + + K K L H++
Sbjct: 180 RQTLMFSATFSNEIRTLAKTLVRSPKEIDISPRNSTAERVRQWVVTVDKRHKAALLTHLI 239
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+ + + ++F T + L+ LE EAVA+H KSQ+ R AL FKSG
Sbjct: 240 GEQQWFQV---LVFTRTKHGANRLAKQLESAGIEAVAIHGNKSQNARTRALAGFKSGDVR 296
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
L+ATD+A+RGLDI + V+N+D+P DYVHR+GRT RAG G AVS V+ D L+
Sbjct: 297 ALVATDIAARGLDIDQLPQVVNFDLPNVAEDYVHRIGRTGRAGADGEAVSLVSGEDQKLL 356
Query: 417 HEIEAVVGKQLEEFECK--EQEVLSDI 441
IE ++ + +E + E ++DI
Sbjct: 357 KGIERLIKQPIERRQVDNFEPPAVADI 383
>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|355639459|ref|ZP_09051174.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|392982323|ref|YP_006480910.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|419756955|ref|ZP_14283300.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421172786|ref|ZP_15630547.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|354831879|gb|EHF15883.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|384396710|gb|EIE43128.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317828|gb|AFM63208.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404537189|gb|EKA46803.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 449
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 11/377 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
+TFA LGL + ++ + LG PTP+Q IP L+G+D+L AQTG+GKTA FALP+L
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 120 HRLA-EDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174
RL E P V ALV+ PTRELA Q+ + G L LR V GG+ + Q
Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120
Query: 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
L +++ATPGR+ L ++ F++ + LVLDEADR+LD+GF EL +F LP
Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAV---KFAQLQALVLDEADRMLDLGFARELDELFAALP 177
Query: 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
+ RQTLLFSAT + ++TL E ++++Q + + K K H
Sbjct: 178 RKRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCH 237
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L R A++F T +S L LL+ A ++H K Q RL AL RFK+G+
Sbjct: 238 LLQANR---WRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGE 294
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
+L+ATDVA+RGLDI + LV+N+D+P DYVHR+GRT RAG G AVS V ++V+
Sbjct: 295 VDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVE 354
Query: 415 LIHEIEAVVGKQLEEFE 431
L+ IE ++G+ L+ E
Sbjct: 355 LLAAIETLIGQTLQRRE 371
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,499,078,655
Number of Sequences: 23463169
Number of extensions: 325429558
Number of successful extensions: 1778867
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 32836
Number of HSP's successfully gapped in prelim test: 8246
Number of HSP's that attempted gapping in prelim test: 1644157
Number of HSP's gapped (non-prelim): 57696
length of query: 493
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 346
effective length of database: 8,910,109,524
effective search space: 3082897895304
effective search space used: 3082897895304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)