BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011100
(493 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana
GN=RH36 PE=2 SV=1
Length = 491
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/480 (71%), Positives = 408/480 (85%), Gaps = 10/480 (2%)
Query: 19 SKTRSKPEP--QPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCK 76
SK+R P+ + + + T Q EKFTNP+P+S TT +T F GLGLAEWAV+TCK
Sbjct: 16 SKSRKNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSAT-NFEGLGLAEWAVETCK 74
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
ELGMR+PTPVQTHC+PKIL G+DVLGLAQTGSGKTAAFALPILHRLAEDPYGV ALV+TP
Sbjct: 75 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTP 134
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA+QLAEQFKALGS L+LRC V+VGGMD+LTQ SL++RPH+VI TPGRIKVLLE +
Sbjct: 135 TRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENN 194
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
PD+PPVFSRTKFLVLDEADRVLDVGF++ELR +FQCLPK+RQTLLFSATMTS+LQ LLE
Sbjct: 195 PDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEH 254
Query: 257 SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
S+NKAYFYEAYEG KTV+TL QQ+IF K+ K++YL+H+LS+MED GIRSA+IFVSTCR+
Sbjct: 255 SSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRT 314
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
C LSL+L+EL+ E +A+HS SQS RLSAL +FKSG+ ILLATDVASRGLDIPTVDLV
Sbjct: 315 CQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLV 374
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
+NYDIPR PRDYVHRVGRTARAGRGGLAVS +T+ DV LIH+IE VGK++E + ++
Sbjct: 375 INYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPY---NKK 431
Query: 437 VLSD---ITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSGE 493
V++D +T+V KA+RVA MK++D+GFE+K K+R+K K K LA+KG LKKR KR+KS E
Sbjct: 432 VITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLKKRG-KRQKSTE 490
>sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp.
japonica GN=Os07g0633500 PE=3 SV=1
Length = 501
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/431 (63%), Positives = 340/431 (78%), Gaps = 12/431 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LGL++W V C LGMR PT VQ CIP+ LEG+DVLG+A+TGSGKTAAFALPILH
Sbjct: 78 TFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILH 137
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
RL EDPYGV AL + PTRELA QLAEQF+ALG+ L LRC +GG D L QAK L RPH
Sbjct: 138 RLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPH 197
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
VV+ATPGRI L+ +DPD+ VF+RTKFLVLDEADRVLD+ FEE+LRV+F LPK RQT
Sbjct: 198 VVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTF 257
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSAT++ +L++LLELS N +YF+EAYEGFKTV+TLKQ YI +P + K++YL ++LSKM
Sbjct: 258 LFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLFYLLSKMN 317
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
+ IRS I+FVSTCR+C L LLEEL AV+LHS K QS+RL+ALH FKS + +LLA
Sbjct: 318 EDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLA 377
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV-TQNDVDLIHEI 419
TDVASRGLDI TVDLV+NYD+PRYPRDY+HRVGRTARA RGGL++SF+ TQ D+ L+HEI
Sbjct: 378 TDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEI 437
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKG 479
E VVGKQL ++ + ++V D T+V+KARR+A MK+ D+G E+K + RK+Q
Sbjct: 438 EDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQ--------- 488
Query: 480 SLKKRSEKRKK 490
KKR+++RK+
Sbjct: 489 --KKRAQERKR 497
>sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49
PE=1 SV=1
Length = 483
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFS--IKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA TVE L Q+Y+ +P+ VKD YL+H++ +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D S IIF +TC++C +L ++L + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + K+LEEF +E EVL +T+V RR +KL F+EK + K+++L
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQL 416
>sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49
PE=2 SV=1
Length = 480
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/415 (49%), Positives = 287/415 (69%), Gaps = 6/415 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
FA +GL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+EDPYG+ LV+TPTRELAYQ+AEQF+ LG L L+ ++VGGMD++ QA L +PHV
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG---FEEELRVVFQCLPKNRQ 238
VIATPGR+ L + +FLV+DEADR+L+ G F +L + +P RQ
Sbjct: 124 VIATPGRLADHLRSSNTFN--MKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQ 181
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSAT+T L+ L L+ N+ +F+EA +TVE L Q+Y+ +P+ VKD YL+H++
Sbjct: 182 TLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 299 MED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+D + S IIF +TC++C +L ++L + + VALHS Q +R +AL +FKS I
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRI 301
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVASRGLDIPTV +V+N++ P P+ Y+HRVGRTARAGR G A++ VTQ D+ L+H
Sbjct: 302 LIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLH 361
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKL 472
IE + +QL E +E EVL +T+V RR +KL F+EK + K++++
Sbjct: 362 AIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQM 416
>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium
discoideum GN=ddx49 PE=3 SV=1
Length = 508
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/413 (48%), Positives = 282/413 (68%), Gaps = 7/413 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LGL W V CK+LG + P+ +Q + IP+IL+G+D++ A+TGSGKTA+FA+PIL+
Sbjct: 5 TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN 64
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L+EDPYGV A+++TPTRELA Q+ EQF A+G+ +++ C VV+GG+D +TQA L RPH
Sbjct: 65 QLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPH 124
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKNRQ 238
+++ATPGR+ L I F KFLVLDEADR+L FE E+ + + L P+ RQ
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFC--KFLVLDEADRLLGEDFELEIASILEHLPPPEKRQ 182
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
TLLFSATMT +L L ++ NK + +E + TV+TLKQ+YI++P KD YL+++L K
Sbjct: 183 TLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKK 242
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E SAI+FV+ C + + +L +LD +V+LHSF Q RL+AL FKSG+ +L
Sbjct: 243 HEG---SSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVL 299
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVASRGLDIP V +V+NY + +DY+HRVGRTAR GR G A+SF+T +DV LI
Sbjct: 300 VATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKG 359
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
IE ++ KQLE ++ + EV + AR++ + L + F K KER+ ++
Sbjct: 360 IEEIIKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTER 412
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47
PE=2 SV=2
Length = 455
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 283/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F +++EV+ RV +A+R A M+L + G E+K ++R+
Sbjct: 376 QRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHG-EKKKRKRE 426
>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47
PE=2 SV=1
Length = 457
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 281/412 (68%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D ++Q+ +L
Sbjct: 83 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA 142
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH+VIATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 143 KKPHIVIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 200
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q Y+FIP KD YL+++L
Sbjct: 201 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 260
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 261 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 317
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 318 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 377
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 378 QRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG-EKKKRSRE 428
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47
PE=1 SV=1
Length = 455
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 280/412 (67%), Gaps = 6/412 (1%)
Query: 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFAL 116
+ T TF LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFAL
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 117 PILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176
PIL+ L E P + ALV+TPTRELA+Q++EQF+ALGS + ++ V+VGG+D ++Q+ +L
Sbjct: 81 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236
+PH++IATPGR+ LE K+LV+DEADR+L++ FE E+ + + +P++
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFN--LRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296
R+T LFSATMT +Q L + ++TVE L+Q YIFIP KD YL+++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356
+++ S +IF STC + +LLL L A+ LH SQS+RL +L++FK+ +
Sbjct: 259 NELAG---NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARS 315
Query: 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLI 416
ILLATDVASRGLDIP VD+V+N+DIP + +DY+HRVGRTARAGR G A++FVTQ DV+L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 417 HEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++GK+L F ++ EV+ RV +A+R A M+L + G E+K + R+
Sbjct: 376 QRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG-EKKKRSRE 426
>sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp8 PE=3 SV=1
Length = 453
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/438 (44%), Positives = 290/438 (66%), Gaps = 10/438 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+F+ LG++ W + T K L + PT +Q I +ILEG++ +G A+TGSGKTAAFALPI+
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ ++DP G+ AL++TPTRELA Q+ EQF ALG+ L+L+ ++VGGMD++ Q+ L RPH
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 181 VVIATPGRIKVLLEED-PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNR 237
VV+ATPGR+ L+ + + R KFLV+DEADR+L F ++L F LP ++R
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 238 QTLLFSATMTSDLQTL-LELSANKA---YFYEA-YEGFKTVETLKQQYIFIPKNVKDVYL 292
QTLLF+AT+T ++ L + N + YE + TL+Q YIF+ V++ YL
Sbjct: 188 QTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYL 247
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+H+L+ E+ +SAIIFV+ R+ L+ +L L+ LHS Q +R+++L RF++
Sbjct: 248 VHLLTIPENAK-KSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRA 306
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIP+V LV+N+D+PR P DY+HRVGRTARAGR G ++S VT+ D
Sbjct: 307 EAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
Query: 413 VDLIHEIEAVVGKQLEEFE-CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
VDL+H IE VG +L E+E E ++L I V A+R A+++++D GF E+ ++R +++
Sbjct: 367 VDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKR 426
Query: 472 LKMLAEKGSLKKRSEKRK 489
L LK K+K
Sbjct: 427 LMANGISNKLKNSGRKKK 444
>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis
elegans GN=T26G10.1 PE=3 SV=1
Length = 489
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/411 (45%), Positives = 274/411 (66%), Gaps = 7/411 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA LG+++ C+ LG +P+ +Q +P L+GKDV+GLA+TGSGKT AFA+P+L
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P LV+TPTRELA+Q+ +QF+ALGSG+ L V+VGG+D+ QA +L RPH
Sbjct: 105 SLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE KFL++DEADR+L++ FE EL + + +P+ R+T
Sbjct: 165 IIVATPGRLVDHLENTKGFN--LKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTY 222
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT + L S +KTV+ LKQ YIF+P K+ YL+++L+ E
Sbjct: 223 LFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLN--E 280
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
G SAI+F +TC + ++++L +L +AV LH SQ +RL +L++FKS IL+
Sbjct: 281 HAG-NSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVC 339
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP VD+V+NYD+P +DYVHRVGRTARAGR G+A++ VTQ DV+ +IE
Sbjct: 340 TDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIE 399
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQK 471
A +GK+L+E++C E EV+ + R +A A +++ + +EK K KK++
Sbjct: 400 ANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKE--MDEKKKSGKKRR 448
>sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana
GN=RH10 PE=2 SV=2
Length = 456
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/441 (43%), Positives = 279/441 (63%), Gaps = 20/441 (4%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E V+ C+ LG + P+ +Q +P LEGKDV+GLAQTGSGKT AFA+PIL
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 121 RLAEDPY------------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 168
L E Y A V++PTRELA Q+AEQF+ALG+ + LRC V+VGG+D
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 169 LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRV 228
+ Q +L RPHV++ATPGR+ + + K+LVLDEADR+L+ FE+ L
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFS--LKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ + +P R+T LFSATMT ++ L EA + TV+TLKQQY F+ K
Sbjct: 188 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++LS+M + +++IF TC L+L+L L A+ + +QS+RL AL+
Sbjct: 248 DCYLVYILSEMPE---STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 304
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+FK+G+ IL+ TDVASRGLDIP+VD+V+NYDIP +DY+HRVGRTARAGR G+ +S V
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 364
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
Q +++ +IE ++GK+L E+ +E EVLS + RV +A++++ M + + G ++ E
Sbjct: 365 NQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDD 424
Query: 469 KQKLKMLAEKGSLKKRSEKRK 489
++ + L G K R K +
Sbjct: 425 EESERFL---GGNKDRGNKER 442
>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rrp3
PE=3 SV=1
Length = 472
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/455 (43%), Positives = 293/455 (64%), Gaps = 21/455 (4%)
Query: 25 PEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVT--------FAGLGLAEWAVQTCK 76
PE + E S + Q + DP T ++T T F LG+ + + C+
Sbjct: 14 PEHGSDTESTSSHKSVAQQD-----DPLETQDEATATESRPAPKSFKDLGIIDQLCEACE 68
Query: 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136
+G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E+P L++ P
Sbjct: 69 TMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAP 128
Query: 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEED 196
TRELA+Q+++ F++LGS +++RC V+VGGMD+++Q+ +L +PH+++ATPGR+ LE
Sbjct: 129 TRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENT 188
Query: 197 PDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256
K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L
Sbjct: 189 KGFS--LRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRA 246
Query: 257 S-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
S +N + ++TV TL Q Y+F+P KD+YL+++L+ E +G +S IIF T
Sbjct: 247 SLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLN--EFVG-QSTIIFTRTVH 303
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
+S LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD+
Sbjct: 304 ETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDV 363
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435
VLN+D+P + YVHRVGRTARAG+ G+A+SFVTQ DV++ IE +GK+L+E+E ++
Sbjct: 364 VLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKD 423
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
EV+ RV +A+R A M++ + F+EK + K+
Sbjct: 424 EVMVLAERVGEAQRQAIMEMKN--FDEKRGTKAKK 456
>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RRP3 PE=3 SV=1
Length = 480
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/454 (44%), Positives = 291/454 (64%), Gaps = 20/454 (4%)
Query: 21 TRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGM 80
T+S E + EP+ SKN + ++++ + + T TF LG+ + +TC+EL
Sbjct: 35 TKSDNEEE-EPKKSSKNYTSVEVDE---------SEEQTKTFKDLGVIDSICETCEELKF 84
Query: 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140
+PTP+Q IP LEG+D++GLAQTGSGKTAAFA+P+L L E+P + +V+ PTREL
Sbjct: 85 TKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTREL 144
Query: 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP 200
AYQ++E F+ALGS + LR VVVGGM+++TQA +L +PHV++ATPGR+ LE
Sbjct: 145 AYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKG-- 202
Query: 201 PVFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSA 258
FS RT KFLV+DEADR+LD+ F L + + +P+ R T LFSATMTS ++ L S
Sbjct: 203 --FSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLFSATMTSKVEKLQRASL 260
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
++T + L Q +F P KD +L++++S E+ G S IIF T
Sbjct: 261 VDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVS--ENAG-NSMIIFARTKSDTQ 317
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
+SLLL L A+ LH SQ+ RL AL++FKSG IL+ATDVASRGLDIP VDLV+N
Sbjct: 318 RISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVIN 377
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
YDIP + Y+HRVGRTARAGR G +V+ V+Q D++L IE +GK+L+ + + + V+
Sbjct: 378 YDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLDSYPLESEAVM 437
Query: 439 SDITRVYKARRVATMKLM-DDGFEEKAKERKKQK 471
RV +A R A ++ +DG ++++K KK++
Sbjct: 438 LFSERVAEASRAAIQEMKGEDGTKKRSKFDKKRR 471
>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium
discoideum GN=ddx47 PE=3 SV=1
Length = 546
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/406 (43%), Positives = 263/406 (64%), Gaps = 5/406 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
VTF LG+ + C +LG +P +Q IP L+G+D++GLAQTGSGKTAAF +P+
Sbjct: 118 NVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPV 177
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L +L E P G+ L + PTRELAYQ+A+QF A+GS + ++ V+VGG+D ++Q+ +L +
Sbjct: 178 LQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKK 237
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHVV+ +PGR+ LE K+ ++DEADR+ FEEE+ + + +PK R
Sbjct: 238 PHVVVGSPGRVLHHLEHTKGFN--LRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERN 295
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMTS + L S + ++TV+TL QQY+F+P KD YL ++L++
Sbjct: 296 TYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNE 355
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+ IIF STC S ++++L L A+ ++ Q +RL++L++FK G +IL
Sbjct: 356 LAG---NLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSIL 412
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VDLV+NYD+P ++YVHRVGRTARAG G A++ VTQ DV++
Sbjct: 413 VATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQR 472
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKA 464
IE V+ K+L+ F C+E+ VL + RV +A R+AT +L D + +
Sbjct: 473 IEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNYSSSS 518
>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3
PE=3 SV=1
Length = 472
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/455 (44%), Positives = 292/455 (64%), Gaps = 21/455 (4%)
Query: 31 PEPESKNAKTTQLEKFTNPDPNSTTTDSTV---------TFAGLGLAEWAVQTCKELGMR 81
PE S T+ E D + T D +F LG+ + + C+ +G +
Sbjct: 14 PEHGSDAESTSSHESVAQQDDTAETQDEAAATETRPAPKSFKDLGIIDQLCEACETMGYK 73
Query: 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141
PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P L++ PTRELA
Sbjct: 74 APTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELA 133
Query: 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPP 201
+Q+++ F++LGS +++RC V+VGGMD+++Q+ +L +PH+++ATPGR+ LE
Sbjct: 134 FQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKG--- 190
Query: 202 VFS-RT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS-A 258
FS RT K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L S +
Sbjct: 191 -FSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLS 249
Query: 259 NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318
N + ++TV TL Q Y+F+P KD+YL+++L+ E +G +SAIIF T
Sbjct: 250 NPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLN--EFVG-QSAIIFTRTVHETQ 306
Query: 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378
+S LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD+VLN
Sbjct: 307 RISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLN 366
Query: 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL 438
+D+P + YVHRVGRTARAG+ G+A+SFVTQ DV++ IE +GK+L+E+E ++ EV+
Sbjct: 367 FDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVM 426
Query: 439 SDITRVYKARR--VATMKLMDDGFEEKAKERKKQK 471
RV +A+R + MK D+ KAK+ K K
Sbjct: 427 VLAERVGEAQRQAIVEMKNFDEKRGTKAKKFGKGK 461
>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain
RS) GN=RRP3 PE=3 SV=1
Length = 474
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 204/478 (42%), Positives = 299/478 (62%), Gaps = 11/478 (2%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVT--FAGLGLAEWAVQTC 75
K + S PQ E E +++T+Q P N ++T T F LG+ + + C
Sbjct: 5 KRRKLSHTPPQGEAEDGFSDSETSQASLQETPG-NDEKIEATTTKSFKDLGIIDSLCEAC 63
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135
LG + PT +Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P + LV+
Sbjct: 64 DSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLA 123
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELAYQ+++QF+ALGS + +RC V+VGGMD+++QA +L +PH+++ATPGR+ LE
Sbjct: 124 PTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLEN 183
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
K+LV+DEADR+LD+ F L + + LPK R+T LFSATM+S +++L
Sbjct: 184 TKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQR 241
Query: 256 LS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
S +N + ++TV TL Q + IP KD+YL+++L++ +S IIF T
Sbjct: 242 ASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPG---QSVIIFTRTV 298
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
L++LL L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD
Sbjct: 299 NETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVD 358
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
LVLNYD+P + Y+HRVGRTARAG+ G A S VTQ DV++ IEA +GK+L+E++ ++
Sbjct: 359 LVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEK 418
Query: 435 QEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
+EV+ RV +A+R A + M + E + K+ + + + KG+ + R E ++ G
Sbjct: 419 EEVMVLSDRVGEAQRHAITE-MKELHENRGKKGATLRNRRIG-KGAKRSRDEMDREEG 474
>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=RRP3 PE=3 SV=1
Length = 551
Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 269/422 (63%), Gaps = 8/422 (1%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
V F+ LG+ V+ C +G + PTP+Q IP+ L+ +DV+GLAQTGSGKTAAF +PIL
Sbjct: 104 VEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPIL 163
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
L ++P A V+ PTRELAYQ+++Q +ALGS + +R +VGGMD+++Q+ +L RP
Sbjct: 164 QALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRP 223
Query: 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239
HV++ATPGR++ LE ++LV+DEADR+LD+ F + + Q +P+ R+T
Sbjct: 224 HVIVATPGRLQDHLENTKGFS--LRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRT 281
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
+LFSATMT+ + L S E + TV TLKQ Y+F+P KD YL+H+ +
Sbjct: 282 MLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLAN-- 339
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E G S I+F T LS+LL L A+ LH SQ RL AL++FK+G +IL+
Sbjct: 340 EQAG-HSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 398
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVASRGLDIP VDLV+NYDIP +DY+HRVGRTARAGR G +V+ VTQ DV+L+ I
Sbjct: 399 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 458
Query: 420 EAVVGKQLEEFEC--KEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
EAV+G ++ EF ++ V+ RV +A R A +L D G A K+K KM +
Sbjct: 459 EAVIGLKMTEFPGGNDKEAVMLLSERVAEAHRAAVRELKDKGVGS-AGGSGKRKRKMDGK 517
Query: 478 KG 479
G
Sbjct: 518 YG 519
>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=rrp3 PE=3 SV=1
Length = 473
Score = 361 bits (927), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 284/422 (67%), Gaps = 12/422 (2%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+S T + +F LG+ + + C +G + PTP+Q IP L+ +D++GLA+TGSGKT
Sbjct: 45 SSETKPAPKSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKT 104
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AAFALPIL L + P LV+ PTRELA+Q+++ F+ALGS +++RC V+VGGMD+++Q
Sbjct: 105 AAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQ 164
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVLDEADRVLDVGFEEELRVV 229
+ +L +PH+++ATPGR+ LE FS RT K+LV+DEADR+LD+ F L +
Sbjct: 165 SIALGKKPHIIVATPGRLLDHLENTKG----FSLRTLKYLVMDEADRLLDMDFGPLLDKI 220
Query: 230 FQCLPKNRQTLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ LP+ R+T LFSATM+S +++L S +N + ++TV TL Q Y FIP K
Sbjct: 221 LKILPRERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYRFIPHKHK 280
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D+YL+++L+ E +G +SAIIF T +S LL L A+ LH SQS RL AL
Sbjct: 281 DIYLVYLLN--EFVG-QSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALG 337
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F+S IL+ATDVA+RGLDIP+VD+VLN+D+P + YVHRVGRTARAG+ G+A+SFV
Sbjct: 338 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFV 397
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV++ IE +GK+L+E++ ++ EV+ RV +A+R A M++ + F+EK R
Sbjct: 398 TQYDVEIWLRIEGALGKKLDEYDLEKDEVMVLAERVGEAQRQAIMEMKN--FDEKKGTRA 455
Query: 469 KQ 470
K+
Sbjct: 456 KK 457
>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rrp3 PE=3 SV=1
Length = 465
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 189/455 (41%), Positives = 285/455 (62%), Gaps = 10/455 (2%)
Query: 16 KPKSKTRSKPEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTC 75
K + T +PE + E ES +++ + ++ S F LG+ + + C
Sbjct: 5 KKRKITEKQPETNSDSEAESVSSRGSAKDETQTSGEEPAPAKS---FKELGIIDQLCEAC 61
Query: 76 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135
+ +G + PTP+Q+ IP LEG+DV+GLA+TGSGKTAAFALP+L L E P + LV+
Sbjct: 62 ENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLA 121
Query: 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEE 195
PTRELAYQ+++ F+ LGS + +RC V+VGGMD++ Q+ +L +PH+++ATPGR+ LE
Sbjct: 122 PTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLEN 181
Query: 196 DPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255
K+L +DEADR+LD+ F E L + + LP+ R T LFSATM++ +++L
Sbjct: 182 TKGFS--LRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQR 239
Query: 256 LSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315
S + ++TV TL+ YI IP K++YL+++L++ +SAIIF +T
Sbjct: 240 ASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAG---QSAIIFTTTVH 296
Query: 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375
++ +L L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP+VD+
Sbjct: 297 ETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDV 356
Query: 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435
V N+D+P + Y+HRVGRTARAG+ G+A+SFVTQ DV++ IE + K+L E++ ++
Sbjct: 357 VFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKKLPEYQVEKD 416
Query: 436 EVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
EV+ RV +A R AT+++ F+EK R K+
Sbjct: 417 EVMVMSERVAEASRQATIEM--KSFDEKKGARGKK 449
>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1
Length = 467
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 188/411 (45%), Positives = 270/411 (65%), Gaps = 8/411 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF LG+ E + C+ +G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL
Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQ 108
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E P LV+ PTRELAYQ+++ F++LG+ + +R V+VGGMD+++Q+ SL +PH
Sbjct: 109 ALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH 168
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+T
Sbjct: 169 IIVATPGRLLDHLENTKGFS--LRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTF 226
Query: 241 LFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATM+S +++L S +N + ++TV TL Q Y+FIP+ KD+YL+++L++
Sbjct: 227 LFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEF 286
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
+S IIF T L+ LL L A+ LH SQS RL AL +F++ IL+
Sbjct: 287 AG---QSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+VLN+D+P YVHRVGRTARAG+ GLA+SFV Q DV++ I
Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
E +GK+L+E++C + EV+ V +A+R A M + D + EK R K+
Sbjct: 404 EGALGKKLKEYDCPKDEVMVLGENVAEAQRQAIMDMKD--YNEKKGSRGKK 452
>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1
Length = 482
Score = 356 bits (913), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 195/444 (43%), Positives = 287/444 (64%), Gaps = 26/444 (5%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 55 TKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPI 114
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L + P + LV+ PTRELAYQ+++ F+ALGS + ++C V+VGGMD++ QA +L +
Sbjct: 115 LQSLLDKPQPLFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKK 174
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 175 PHIIVATPGRLLDHLENTKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 232
Query: 239 TLLFSATMTSDLQTL----------LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
T LFSAT++S +++L + +S+NK ++TV TL Q YIFIP K
Sbjct: 233 TYLFSATISSKVESLQRASLKDPLRVSISSNK---------YQTVSTLIQNYIFIPLVHK 283
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
D YL+++L++ +SAIIF T +++LL L A+ LH SQS RL AL+
Sbjct: 284 DTYLIYLLNEFAG---QSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALN 340
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
+F++G IL+ATDVA+RGLDIP+VD+VLNYD+P+ + Y+HRVGRTARAG+ G A+SFV
Sbjct: 341 KFRAGSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFV 400
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
TQ DV++ IEA +GK+ EE++ + EV+ RV +A+R A + M + E++ K+
Sbjct: 401 TQYDVEIWMRIEAALGKKQEEYQTVKDEVMVFKPRVEEAQRHARNE-MKNLHEDRGKKGA 459
Query: 469 KQKLKMLAEKGSLKKRSEKRKKSG 492
K + A G+ + R E ++ G
Sbjct: 460 VLKGRRPAN-GAKRGRDEMDREEG 482
>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp3 PE=3 SV=1
Length = 465
Score = 356 bits (913), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/422 (44%), Positives = 272/422 (64%), Gaps = 7/422 (1%)
Query: 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKT 111
+S ++ TF LG+ + + C++LG + PTP+Q IP +L +DV+GLAQTGSGKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 112 AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171
AAFALP++ L +P A+V+ PTRELAYQ++EQF+A+G + +R V+VGGMD++TQ
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231
A +L +PHV++ TPGR+ LE K+L++DEADR+LD+ F + + +
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLENTKGFS--LKNLKYLIMDEADRLLDMDFGPIIDKILK 215
Query: 232 CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
+P R+TLLFSATMTS ++ L S ++ F TV+TL Q+Y+F P KD Y
Sbjct: 216 IIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTY 275
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L+++++++ S IIF T L++LL L A+ LH SQS RL AL++FK
Sbjct: 276 LVYLVNELAG---NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFK 332
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
SG + L+ATDVA+RGLDIP VD+V+NYDIP + Y+HRVGRTARAGR G +++ VTQ
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQY 392
Query: 412 DVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARR--VATMKLMDDGFEEKAKERKK 469
D++ IEA +GK+++E+E ++ V RV +A+R + MK + D + K K K
Sbjct: 393 DLEPFLRIEATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDRRKSKGKLHTK 452
Query: 470 QK 471
+K
Sbjct: 453 RK 454
>sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RRP3 PE=3
SV=1
Length = 486
Score = 355 bits (910), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 195/450 (43%), Positives = 294/450 (65%), Gaps = 30/450 (6%)
Query: 30 EPEPESKNAKTTQLEKFTNPDPNSTTTDS-TVTFAGLGLAEWAVQTCKELGMRRPTPVQT 88
EP+P S + P T D+ TF LG+ + + C++L + PTP+Q
Sbjct: 29 EPKPSSDEESEEESATLEEPSAEETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQE 88
Query: 89 HCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148
IP L+G+D++GLA+TGSGKTAAFALP+L L + P + LV+ PTRELA Q+ + F
Sbjct: 89 KSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQAF 148
Query: 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT- 206
+ALGS + LRC V+VGG+D++ QA +L +PH+V+ATPGR+ LE+ FS RT
Sbjct: 149 EALGSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRLVDHLEKTKG----FSLRTL 204
Query: 207 KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------LEL 256
K+L++DEADR+LD+ F + + + +P+ R+T LFSAT++S +++L + +
Sbjct: 205 KYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLFSATISSKIESLQRASLRDPVKVSI 264
Query: 257 SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316
S+NK ++TV TL Q Y+FIP KDV+L+++++ E G +S I+F T
Sbjct: 265 SSNK---------YQTVSTLLQNYLFIPHPQKDVHLIYLIN--EHAG-QSTIVFTRTVWE 312
Query: 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376
+S+LL L A+ LH SQS RL AL++F+SG IL+ATDVA+RGLDIP+VD+V
Sbjct: 313 TQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVV 372
Query: 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436
LNYD+P+ + Y+HRVGRTARAG+ G+A+S VTQ D+++ IEA +GK+L E+ +++E
Sbjct: 373 LNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKLAEYPTEKEE 432
Query: 437 VLSDITRVYKARRVATMKLMDDGFEEKAKE 466
V++ +RV +A+R+A ++ M EE+ K+
Sbjct: 433 VMAFQSRVEEAQRIARIE-MKSFTEERGKK 461
>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=RRP3 PE=3 SV=1
Length = 485
Score = 354 bits (909), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 190/435 (43%), Positives = 279/435 (64%), Gaps = 8/435 (1%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPI
Sbjct: 58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPI 117
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L P + L++ PTRELA Q++E F+ALGS + +RC V+VGGMD+++QA SL +
Sbjct: 118 LQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKK 177
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+++ATPGR+ LE K+LV+DEADR+LD+ F L + + LP+ R+
Sbjct: 178 PHIIVATPGRLLDHLENTKGFS--LRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERR 235
Query: 239 TLLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
T LFSATM+S +++L S +N + ++TV TL Q Y+FIP KD+YL+++L+
Sbjct: 236 TYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLN 295
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
+ +SAI+F T L++LL L ++ LH SQS RL AL +F+S I
Sbjct: 296 EYAG---QSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDI 352
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ATDVA+RGLDIP+VD+VLN+D+P + Y+HRVGRTARAG+ G A S VTQ D+++
Sbjct: 353 LVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
IE +GK+L+E++ +++EV+ RV +A+R A ++ D EK R
Sbjct: 413 RIENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKD--LHEKRGSRGATLKGRRPA 470
Query: 478 KGSLKKRSEKRKKSG 492
KG+ + R E ++ G
Sbjct: 471 KGAKRGRDEMDREEG 485
>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=RRP3 PE=3 SV=1
Length = 493
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/453 (43%), Positives = 282/453 (62%), Gaps = 28/453 (6%)
Query: 20 KTRSKPEPQPEP-EPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKEL 78
K ++KP+P P EP + + E + + + TF LG+ + CKEL
Sbjct: 24 KPKTKPQPVTAPVEPSAVPNSEAESETIDDASGEESEEPAPKTFQDLGIVDSLCDACKEL 83
Query: 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138
G ++PTP+Q IP L+ +D++GLA+TGSGKT AFALPIL L + P + ALV+ PTR
Sbjct: 84 GWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTR 143
Query: 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD 198
ELA Q+A+ F+ALGS + LRC +++GG+D++ QA +L +PHVV+ATPGR+ LE+
Sbjct: 144 ELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKG 203
Query: 199 IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----- 253
++LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L
Sbjct: 204 FS--LRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRACL 261
Query: 254 -----LELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAI 308
+ +S++K ++TV TL Q Y+FIP KD YL+++ ++ I I
Sbjct: 262 RDPLKVSISSSK---------YQTVSTLVQNYVFIPHTHKDTYLIYLCNEFAGQTI---I 309
Query: 309 IFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368
IF T +++LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGL
Sbjct: 310 IFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGL 369
Query: 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428
DIP VD VLN D+P + YVHRVGRTARAGR G A+SFVTQ D++L IEA +G +L
Sbjct: 370 DIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLRIEAALGTKLT 429
Query: 429 EFECKEQEVLSDITRVYKARRVATMK---LMDD 458
E+ ++ +V+ RV +A+R+A + LMDD
Sbjct: 430 EYSLEKDDVMVFRPRVEEAQRIAKTEIKALMDD 462
>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RRP3 PE=3 SV=2
Length = 546
Score = 352 bits (902), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 185/399 (46%), Positives = 261/399 (65%), Gaps = 7/399 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ E C+ LG + TP+QT IP L GKD++GLA+TGSGKTAAF LPIL
Sbjct: 116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQ 175
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L + P L++ PTRELAYQ+++Q ALGS ++++C +VGGMD++ QA +L RPH
Sbjct: 176 ALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH 235
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQT 239
+++A+PGR+ LE K+LVLDEADR+LD+ F + L +F+ LP+ +R T
Sbjct: 236 IIVASPGRLLDHLENTKGFS--LKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHT 293
Query: 240 LLFSATMTSDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
LFSATM+S +++L + N + + V TL Q Y+ IP KD+YL+H+L+
Sbjct: 294 YLFSATMSSKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLN- 352
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
+++G + I+F T L++LL L +A+ LH SQS RL AL++FK+ IL
Sbjct: 353 -DNIG-HATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDIL 410
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VDLV+N+D+P YVHRVGRTARAG+ G AVSFVTQ D+++
Sbjct: 411 VATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQR 470
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMD 457
IE +GKQ+ E + EV+ RV +A+RVA ++ D
Sbjct: 471 IEHALGKQVPEEKVSRDEVMVYAERVGEAQRVAVREMKD 509
>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RRP3 PE=3 SV=1
Length = 484
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 182/395 (46%), Positives = 260/395 (65%), Gaps = 5/395 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG++ + C +G ++P+ +Q IP LEGKD++GLAQTGSGKTAAF+LPIL
Sbjct: 39 TFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQ 98
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E+P ALV+ PTRELAYQ+++Q +LGSG+ +R V+VGGMD+++Q+ +L RPH
Sbjct: 99 TLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH 158
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F + + + +PK R T
Sbjct: 159 IIVATPGRLMDHLENTKGFS--LKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNTY 216
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ + L S NK E + TV TL Q Y+ +P KD YL+++ +++
Sbjct: 217 LFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELS 276
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF T LS++L L A+ LH +QS RL++L++FKSG +IL+A
Sbjct: 277 S---SSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVA 333
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VDLV+NYD+P +DYVHRVGRTARAGR G +++ VTQ DV+++ IE
Sbjct: 334 TDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIE 393
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+ +GK++ F+ ++ V V KA R A +++
Sbjct: 394 SHIGKKMTSFDVDKEAVALLTDTVAKANREAALEM 428
>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RRP3 PE=3 SV=1
Length = 484
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 182/395 (46%), Positives = 260/395 (65%), Gaps = 5/395 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG++ + C +G ++P+ +Q IP LEGKD++GLAQTGSGKTAAF+LPIL
Sbjct: 39 TFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQ 98
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E+P ALV+ PTRELAYQ+++Q +LGSG+ +R V+VGGMD+++Q+ +L RPH
Sbjct: 99 TLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH 158
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGR+ LE K+LV+DEADR+LD+ F + + + +PK R T
Sbjct: 159 IIVATPGRLMDHLENTKGFS--LKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNTY 216
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ + L S NK E + TV TL Q Y+ +P KD YL+++ +++
Sbjct: 217 LFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELS 276
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
S +IF T LS++L L A+ LH +QS RL++L++FKSG +IL+A
Sbjct: 277 S---SSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVA 333
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVASRGLDIP VDLV+NYD+P +DYVHRVGRTARAGR G +++ VTQ DV+++ IE
Sbjct: 334 TDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIE 393
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKL 455
+ +GK++ F+ ++ V V KA R A +++
Sbjct: 394 SHIGKKMTSFDVDKEAVALLTDTVAKANREAALEM 428
>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rrp3 PE=3 SV=1
Length = 472
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 192/459 (41%), Positives = 285/459 (62%), Gaps = 13/459 (2%)
Query: 18 KSKTRSKPEPQPEPEPESKNAKTTQLEKFTNP-----DPNSTTTDSTVTFAGLGLAEWAV 72
K + ++ PQ E +S+ + + N +P+ + +F LGL E
Sbjct: 5 KKRKIAREAPQQEDHSDSEAHSSASEDAAPNTTEQEQEPSEAPKQAPKSFKELGLIEQLC 64
Query: 73 QTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLAL 132
+ C +G + PT +Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P L
Sbjct: 65 EACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGL 124
Query: 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVL 192
V+ PTRELAYQ+++ F+ LGS + +R V+VGGMD+++Q+ +L +PH+++ATPGR+
Sbjct: 125 VLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDH 184
Query: 193 LEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQT 252
LE K+LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++
Sbjct: 185 LENTKGFS--LRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSSKVES 242
Query: 253 LLELS-ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFV 311
L S N + F+TV TL+Q YIFIP KD+YL+++L+ E +G +S IIF
Sbjct: 243 LQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLN--EFVG-QSCIIFC 299
Query: 312 STCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP 371
T LS L L A+ LH SQS RL AL +F+S IL+ATDVA+RGLDIP
Sbjct: 300 RTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP 359
Query: 372 TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431
+VD+VLN+D+P + ++HR+GRTARAG+ G+A+SF TQ DV+ IE +GK+L E+
Sbjct: 360 SVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKKLPEYP 419
Query: 432 CKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
++ EV+ RV +A+R A +++ + ++EK R K+
Sbjct: 420 AEKDEVMVLAERVSEAQRSAILEMKN--YDEKKGSRGKK 456
>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain
B05.10) GN=rrp3 PE=3 SV=1
Length = 486
Score = 348 bits (893), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 292/469 (62%), Gaps = 40/469 (8%)
Query: 48 NPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK 93
+P+P T D+ V +F LG+ + + C LG + PTP+Q IP
Sbjct: 34 SPEPIEDTEDNRVIEETEEAEEDDAPKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPL 93
Query: 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153
L+G+D++GLA+TGSGKTAAFALPIL L + P + LV+ PTRELAYQ+++QF+ALGS
Sbjct: 94 ALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGS 153
Query: 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213
+ ++C V+VGGMD++ Q+ +L +PH+++ATPGR+ LE K+LV+DE
Sbjct: 154 VIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFS--LRSLKYLVMDE 211
Query: 214 ADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------LELSANKAYF 263
ADR+LD+ F L + + LP+ R+T LFSAT++S +++L + +S+NK
Sbjct: 212 ADRLLDLDFGPILDKILKVLPRERRTYLFSATISSKVESLQRASLKDPLRVSISSNK--- 268
Query: 264 YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLL 323
++TV TL Q YIFIP KD YL+++L++ +SAIIF T +++L
Sbjct: 269 ------YQTVSTLIQNYIFIPLIHKDTYLIYLLNEFAG---QSAIIFTRTVNETQRIAIL 319
Query: 324 LEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR 383
L L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP+VD+VLNYD+P+
Sbjct: 320 LRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQ 379
Query: 384 YPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR 443
+ Y+HRVGRTARAG+ G A+S VTQ D+++ IEA +GK+ E+ + EV+ R
Sbjct: 380 DSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGKKQVEYPTVKDEVMVFKPR 439
Query: 444 VYKARRVATMKLMDDGFEEKAKERKKQKLKMLAEKGSLKKRSEKRKKSG 492
V +A+R A + M + E++ K+ K + A G+ + R E ++ G
Sbjct: 440 VEEAQRHARNE-MKNLHEDRGKKGAVLKGRRPAN-GAKRGRDEMDREEG 486
>sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP8 PE=1 SV=1
Length = 431
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 271/421 (64%), Gaps = 12/421 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ QA L +PH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ ++ D R K+LVLDEAD +L F + L LP RQ
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++L K AY E+ + TLK +YI +P++VK+ YL
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R ++LHRF++
Sbjct: 244 YQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ D
Sbjct: 303 NAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE + K++ E + + V+ +T+V KA+R + M + + F E+ +++KK+
Sbjct: 363 VSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKK 422
Query: 471 K 471
+
Sbjct: 423 Q 423
>sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP8 PE=3 SV=1
Length = 431
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 271/421 (64%), Gaps = 12/421 (2%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
+EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ QA L +PH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ ++ D R K+LVLDEAD +L F + L LP RQ
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T +++L K AY E+ + TLK +YI +P++VK+ YL
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ E+ ++AIIFV+ + +L L++L+ +LHS Q +R ++LHRF++
Sbjct: 244 YQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A IL+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SFVTQ D
Sbjct: 303 NAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
Query: 413 VDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
V I IE + K++ E + + V+ +T+V KA+R + M + + F E+ +++KK+
Sbjct: 363 VSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKK 422
Query: 471 K 471
+
Sbjct: 423 Q 423
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rrp-3 PE=3 SV=1
Length = 515
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 187/437 (42%), Positives = 274/437 (62%), Gaps = 25/437 (5%)
Query: 25 PEPQPEPEPESKNAKTTQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPT 84
PEP E P + + + + P+ T TF LG+ + + C+ LG + PT
Sbjct: 56 PEPAEESTPATNSTEEDSVTLDVAPEQEEVETVKK-TFKDLGIVDALCEACERLGYKNPT 114
Query: 85 PVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144
P+Q IP L+ +D++G+A+TGSGKTAAFALPIL L + P + ALV+ PTRELA Q+
Sbjct: 115 PIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQI 174
Query: 145 AEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS 204
A+ F+ALGS + LRC +++GGMD++TQA +L +PHV++ATPGR+ LE+
Sbjct: 175 AQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFS--LR 232
Query: 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTL----------L 254
++LV+DEADR+LD+ F L + + LP+ R+T LFSATM+S +++L +
Sbjct: 233 SMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKV 292
Query: 255 ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314
+S+NK + TV TLK Y+FIP KD YL+++ ++ I IIF T
Sbjct: 293 SVSSNK---------YATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTI---IIFTRTV 340
Query: 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374
+++LL L A+ LH SQS RL AL++F++G IL+ATDVA+RGLDIP VD
Sbjct: 341 LETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILVATDVAARGLDIPNVD 400
Query: 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434
V+N+D+P+ + YVHRVGRTARAG+ G A+S VTQ D+++ IEA +G +L+E+ ++
Sbjct: 401 CVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKLDEYPLEK 460
Query: 435 QEVLSDITRVYKARRVA 451
EV+ RV +A+R A
Sbjct: 461 DEVMVFKPRVEEAQRHA 477
>sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1
Length = 431
Score = 344 bits (883), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 190/431 (44%), Positives = 270/431 (62%), Gaps = 19/431 (4%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL+ W V++ + + PT +Q HCIP+IL+G+D +G A+TGSGKT AFA P+L +
Sbjct: 4 FKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLSQ 63
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
++DP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA L +PH
Sbjct: 64 WSDDPSGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIVKQALELQKKPHF 123
Query: 182 VIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQ 238
+IATPGR+ +L ++ SR K+LVLDEAD +L F +L LP + RQ
Sbjct: 124 IIATPGRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIAKLPPKQKRQ 183
Query: 239 TLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292
TLLF+AT+T ++ L A AY E + TLK +Y+ +P++VK+ YL
Sbjct: 184 TLLFTATITDQVRALQNAPAQDSKPPLFAYEVENVDNVAVPSTLKLEYLLVPEHVKEAYL 243
Query: 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352
+L+ ED S I+FV+ + +L L L+ +LHS QS+R+++L RF++
Sbjct: 244 YQLLT-CEDYKDSSVIVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSERINSLQRFRA 302
Query: 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412
A +L+ATDVA+RGLDIPTV+LV+NYDIP+ P ++HR GRTARAGR G A+SFVT D
Sbjct: 303 NAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRD 362
Query: 413 VDLIHEIEAVVGKQLEEFECKEQE----VLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
V I IE + K+++ ECK+ + +T+V KA+R + M + F EK RK
Sbjct: 363 VSRIEAIEERINKKMD--ECKKVHDTAVIRKALTKVTKAKRESLMDMEKANFGEK---RK 417
Query: 469 KQKLKMLAEKG 479
QK K LAEK
Sbjct: 418 TQKKKNLAEKS 428
>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=rrp3 PE=3 SV=2
Length = 445
Score = 344 bits (883), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 277/427 (64%), Gaps = 13/427 (3%)
Query: 35 SKNAKTTQLEKFTNPDPNS-TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK 93
SKN+ + +PD + +TT + TF LG+ + + C+ELG PTP+Q CIP
Sbjct: 2 SKNSSRDSSPEEVSPDTETPSTTTAPKTFRELGVIDSLCEACEELGYTAPTPIQERCIPI 61
Query: 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153
LEG+D++GLA+TGSGKTAAF LP+L L + P +L++ PTRELA Q+A +ALG+
Sbjct: 62 ALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTRELAQQIAHTVEALGA 121
Query: 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS-RT-KFLVL 211
+ +RC +++GGMD+++QA +L +PHV++ATPGR+ LE FS RT K+LVL
Sbjct: 122 RISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKG----FSLRTLKYLVL 177
Query: 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK 271
DEADR+LD+ F L + + LPK R+T LFSATM+S +++L S + +
Sbjct: 178 DEADRLLDLDFGPILDKLLRLLPK-RKTYLFSATMSSKVESLQRASLSDPVRVSVSTKNQ 236
Query: 272 TVETLKQQYIFIPKNVKDVYLMHVLS-KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE 330
T L Q Y+FIP KD YL+++L+ + MG IIF T LS++L L
Sbjct: 237 TASKLLQSYLFIPHKFKDFYLVYLLNERAGQMG----IIFTRTVHETQRLSIMLRNLGFP 292
Query: 331 AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVH 390
A+ +H SQS RL++L++F++ +L+ATDVA+RGLDIP VD VLNYD+P+ + Y+H
Sbjct: 293 AIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIH 352
Query: 391 RVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRV 450
RVGRTARAG+ G+A SFVTQ +V+L IE +GK++EE++ ++ EV+ RV A+RV
Sbjct: 353 RVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEEYKPEKDEVMIFAERVNDAQRV 412
Query: 451 ATMKLMD 457
A + + D
Sbjct: 413 AALTMRD 419
>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp.
japonica GN=Os03g0669000 PE=2 SV=1
Length = 472
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/411 (44%), Positives = 259/411 (63%), Gaps = 10/411 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TFA LG+ V C +G + PT +Q IP LEG+D++GL QTGSGKT AFALPI+
Sbjct: 42 TFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQ 101
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L + P + A V++PTRELA+Q+ +QF+ALGS + L C V+VGG+D + QA SL R
Sbjct: 102 ALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKR 161
Query: 179 PHVVIATPGRIKVLLEEDPDIPPV-FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237
PH+V+ TPGR LL+ D ++ K+LVLDEAD++L+V F++ L + +PK R
Sbjct: 162 PHIVVGTPGR---LLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKER 218
Query: 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297
+T LFSATMT+ + L E + TV+TL+Q++ F+P + KD +L+HVL+
Sbjct: 219 RTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLN 278
Query: 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATI 357
++ I +IFV TC S LL+L L L +A+++ SQ +RL AL+RFK+ I
Sbjct: 279 ELPGSMI---MIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNI 335
Query: 358 LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIH 417
L+ TDVASRGLDI VD+V+NYDIP +DYVHRVGRTARAG G AVS V Q +
Sbjct: 336 LICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFK 395
Query: 418 EIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
IE ++G ++ + + E++ R+ ++R+A + M +G K K RK
Sbjct: 396 MIEKLLGYEIPDRKVDNAEIMILRERISDSKRIA-LTTMKEGGGHKKKRRK 445
>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP8 PE=3 SV=1
Length = 440
Score = 343 bits (879), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 191/441 (43%), Positives = 278/441 (63%), Gaps = 14/441 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+A+W ++ + + PT +Q+ CIP IL+G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDP+G+ L++TPTRELA Q+AEQF ALG+ ++++ VVVGG D + Q +L +P
Sbjct: 61 TQWSEDPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN-- 236
H VIATPGR+ +L + R K+LVLDEADR+L F +L+ F LP +
Sbjct: 121 HFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDK 180
Query: 237 RQTLLFSATMTSDLQTLLE---LSANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L E F E V TL+ Y+F+P VK+
Sbjct: 181 RQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L +E +A+IFV+ + +L +L +LD +LHS QS+R ++LHRF
Sbjct: 241 YLNSIL-HLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIPTV+LV+N+DIP P D++HRVGRTARAGR G AVS + +
Sbjct: 300 KAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAK-ER 467
D+D I IE + K++E E + V+ + ++ A+R + M++ + F E+ K R
Sbjct: 360 KDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERKKINR 419
Query: 468 KKQKL-KMLAEKGSLKKRSEK 487
KK L K+ E+ + K+S+K
Sbjct: 420 KKHGLDKVKPERVTKPKKSKK 440
>sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP8 PE=3 SV=1
Length = 437
Score = 339 bits (869), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 185/424 (43%), Positives = 267/424 (62%), Gaps = 14/424 (3%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
F LGL++W V++ + +R PT +Q+ CIP+IL+G+D +G A+TGSGKT AFA P+L
Sbjct: 10 NFRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLT 69
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+ +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ QA L +PH
Sbjct: 70 QWSEDPTGMFGIVLTPTRELAMQIAEQFTALGSYMNIRVALVVGGESIVDQALQLQRKPH 129
Query: 181 VVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNR 237
+IATPGR+ +L D R K+LVLDEAD +L F +L+ LP + R
Sbjct: 130 FIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEADILLTETFSNDLKTCVGALPPKEKR 189
Query: 238 QTLLFSATMTSDLQTLLELSANKA------YFYEAYEGFKTVETLKQQYIFIPKNVKDVY 291
QTLLF+AT+T ++ L + K Y E + TL +Y+ +P++VK+ Y
Sbjct: 190 QTLLFTATITDQVRALQDAPVQKGKQPLFCYEVENVDNVAIPSTLNTEYVLVPEHVKEAY 249
Query: 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351
L +L+ E +AIIFV+ + +L L+ LD +LHS Q +R +++HRF+
Sbjct: 250 LYQLLT-CESYANSTAIIFVNRTTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHRFR 308
Query: 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411
+ A +L+ATDVASRGLDIPTV+LV+NYDIP P ++HR GRTARAGR G A+SF+TQ
Sbjct: 309 ANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQR 368
Query: 412 DVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAK--ER 467
DV I IEA + ++ E + + V+ +T+V KA+R A M + + F E+ K +R
Sbjct: 369 DVSRIEAIEARINMKMTECDKVHDTAVIRKALTKVSKAKREALMAMEKENFGERRKLQKR 428
Query: 468 KKQK 471
K QK
Sbjct: 429 KTQK 432
>sp|A4RGD1|RRP3_MAGO7 ATP-dependent rRNA helicase RRP3 OS=Magnaporthe oryzae (strain
70-15 / ATCC MYA-4617 / FGSC 8958) GN=RRP3 PE=3 SV=1
Length = 538
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 260/398 (65%), Gaps = 12/398 (3%)
Query: 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPI 118
T +F LG+ E + C+ L ++PTP+Q IP L+G+DV+G+A+TGSGKTAAFALPI
Sbjct: 109 TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPI 168
Query: 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L L E P + LV+ PTRELA Q+ + F+ALG+ + LRC VVVGG+D+++Q+ +L +
Sbjct: 169 LQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKK 228
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PH+V+ATPGR+ LE+ KFLV+DEADR+LD+ F L + + LP+ R+
Sbjct: 229 PHIVVATPGRLLDHLEKTKGFS--LRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERR 286
Query: 239 TLLFSATMTSDLQTLLELSAN---KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295
T LFSATM+S +++L S K + E KTV TL Q +FIP KDVYL+++
Sbjct: 287 TFLFSATMSSKVESLQRASLRDPLKVSVSSSQE--KTVSTLIQNPLFIPHKHKDVYLIYL 344
Query: 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355
+ + ++ I+F T +S+LL L A+ LH SQS RL AL++FK+
Sbjct: 345 AN---EFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSR 401
Query: 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415
IL+ATDVA+RGLDIP VDLV+N+D+P+ Y+HRVGRTARAGR G A+S +TQ D++L
Sbjct: 402 DILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLEL 461
Query: 416 IHEIE--AVVGKQLEEFECKEQEVLSDITRVYKARRVA 451
IE A+ G++L F+ ++EV+ RV +A+R A
Sbjct: 462 WLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQRHA 499
>sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila
melanogaster GN=Dbp45A PE=2 SV=2
Length = 521
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/416 (42%), Positives = 264/416 (63%), Gaps = 5/416 (1%)
Query: 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHR 121
F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL R
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 122 LAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHV 181
L+E+P ALV+TPT ELAYQ++EQF G + +R VV GG D + +++ LM RPH+
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 182 VIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241
V+A PGR+ L F K+LV+DEADR+L+ F+E L ++ +CLPK RQ L
Sbjct: 129 VVAMPGRLADHLTGCDTFS--FDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLF 186
Query: 242 FSATMTSDL-QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM- 299
FSATM + ++ + A+ + + TVETL Q+Y+ +D+ L+ L K
Sbjct: 187 FSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYR 246
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E+ + +IF +T + C LLS+ L+ ++ + V LH F Q +R++AL RFKS Q L+
Sbjct: 247 EENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLI 306
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS-FVTQNDVDLIHE 418
ATDVA+RGLDIP+V+LV+N+ +PR P++Y+HRVGRTARAGR G+++S F D++L+
Sbjct: 307 ATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAA 366
Query: 419 IEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKM 474
IE + +L E ++ V +V RR + M+L ++ F+E+A+ +++ M
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKTWIM 422
>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RRP3 PE=3 SV=2
Length = 477
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/464 (41%), Positives = 273/464 (58%), Gaps = 17/464 (3%)
Query: 18 KSKTRSKP-EPQPEPEPESKNAKTTQLEKFTNPDPN-----STTTDSTV-----TFAGLG 66
KSKT SK + + E KNA Q ++ + N T D T +F L
Sbjct: 12 KSKTHSKKLDARALAEKIKKNALKQQAQEEPAKEENVAENFDTVVDPTAELKFKSFNELK 71
Query: 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP 126
L ++ +++ +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL L E
Sbjct: 72 LIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQ 131
Query: 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATP 186
LV+ PTRELAYQ+ E F ALGS + LR +VGGMD++ QA+ LM +PH+++ATP
Sbjct: 132 AAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATP 191
Query: 187 GRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246
GRI LE K+LV+DEADR+LD+ F L + + +P R T LFSATM
Sbjct: 192 GRIMDHLEHTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLFSATM 249
Query: 247 TSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRS 306
T+ + L S + ++T + L Q + + K+ YL+H+L+ E +G +S
Sbjct: 250 TNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLN--EFLG-KS 306
Query: 307 AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366
IIF TC +LL L AV LH +Q+QRL +L++FK+G+A IL+ATDVA+R
Sbjct: 307 IIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATDVAAR 366
Query: 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ 426
GLDIP+VD+V+NYDIP + Y+HRVGRTARAG+ G ++S +TQ D+++ IE+V+GK+
Sbjct: 367 GLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESVLGKK 426
Query: 427 LEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQ 470
L + + VL D V+ R A F EK +K +
Sbjct: 427 LPKDPSPSKAVL-DTLHVHVDRASAEAIRQTKDFHEKRNPKKNR 469
>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=RRP3 PE=3 SV=2
Length = 475
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 181/409 (44%), Positives = 259/409 (63%), Gaps = 6/409 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF+ L L ++ ++L +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL
Sbjct: 65 TFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 124
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
L E ALV+ PTRELAYQ+ E F ALGSG+ +R +VGGMD++ QA+ LM +PH
Sbjct: 125 SLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240
+++ATPGRI LE ++LV+DEADR+LD+ F L + + +P R T
Sbjct: 185 ILVATPGRIMDHLENTKGFS--LKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242
Query: 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME 300
LFSATMT+ + L S ++ ++T + L Q + + K+ +L+H+L+ E
Sbjct: 243 LFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLN--E 300
Query: 301 DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA 360
MG +S I+F TC +LL L AV LH +QSQRL +L++FKSG+A IL+A
Sbjct: 301 FMG-KSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIA 359
Query: 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420
TDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAG+ G ++S VTQ D+++ IE
Sbjct: 360 TDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIE 419
Query: 421 AVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKK 469
+V+G +L + ++VL+ + V+ R A F EK ++K+
Sbjct: 420 SVLGFKLPKDPSPPRDVLNAL-HVHVDRASAEAIKQTKDFHEKRTKKKR 467
>sp|Q756G5|DBP8_ASHGO ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP8
PE=3 SV=1
Length = 435
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/428 (42%), Positives = 263/428 (61%), Gaps = 13/428 (3%)
Query: 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115
+DS TF LG+A+W + + + +PT +Q CIP+IL G+D +G A+TGSGKT AFA
Sbjct: 2 SDSNSTFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFA 61
Query: 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175
P+L + + DP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG D+++QA L
Sbjct: 62 APMLTKWSADPCGMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIVSQALEL 121
Query: 176 MNRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234
+PH +IATPGR+ ++ D R ++LVLDEAD +L F + L Q LP
Sbjct: 122 QRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFSDALATCVQILP 181
Query: 235 --KNRQTLLFSATMTSDLQTLLELSANK------AYFYEAYEGFKTVETLKQQYIFIPKN 286
+ RQ LLF+ATMT + L + ++ E + +L+ Y+ +P++
Sbjct: 182 PKEKRQNLLFTATMTDQVLALKDAPPTSGKPPLFSFHVENLDDLAVPASLQTTYLLVPEH 241
Query: 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSA 346
VK+ YL VLS E+ +SAI+FV+ S +L +L +L+ +LHS Q +R ++
Sbjct: 242 VKEAYLYQVLSS-EEYKSKSAIVFVNRTISAEILRRMLMQLEIRVTSLHSQMPQRERTNS 300
Query: 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVS 406
L RF++ A +L+ATDVASRGLDIP V LV+NYDIP P Y+HR GRTARAGRGG A+S
Sbjct: 301 LQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALS 360
Query: 407 FVTQNDVDLIHEIEAVVGKQLEEFECKEQEVL--SDITRVYKARRVATMKLMDDGFEEKA 464
F+ DV I IE +GK+++EF L + +V A+R + M + +GF E+
Sbjct: 361 FIAPKDVSRIQAIEERIGKKMDEFTKVGDTALIRKSLNKVTVAKRESLMAMDKEGFGERR 420
Query: 465 K-ERKKQK 471
K +R K K
Sbjct: 421 KTQRSKGK 428
>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP8 PE=3 SV=2
Length = 441
Score = 335 bits (858), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 188/433 (43%), Positives = 268/433 (61%), Gaps = 15/433 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+++W + + + PT +Q+ CIPKIL+G D +G A+TGSGKT AFA P+L
Sbjct: 1 MSFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDP G+ LV+TPTRELA Q+AEQF ALGS ++++ V+VGG D++ QA L RP
Sbjct: 61 TQWSEDPSGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALELQRRP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN-- 236
H V+ATPGR+ +L D R K+L+LDEADR+L F +L F LP
Sbjct: 121 HFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPSTDK 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE------TLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L + K +TV+ TL +Y+F+P VK+
Sbjct: 181 RQTLLFTATVTDAVRALKDRPVPKGKLPVFIHEVETVDKVAIPSTLSVKYVFVPSYVKEA 240
Query: 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350
YL +L+ + +IIF + + LL L +L+ +LHS Q++R ++LHRF
Sbjct: 241 YLHSILN-LPQYSDSLSIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRF 299
Query: 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410
K+G A IL+ATDVASRGLDIPTV+LV+NYDIP D++HRVGRTARAGR G A+S V +
Sbjct: 300 KAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAE 359
Query: 411 NDVDLIHEIEAVVGKQLEEFE-CKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKERK 468
DVD I IE + K+++ E + +V+ D + + A+R A M + + F EK RK
Sbjct: 360 KDVDRILAIEERINKKMDLIEDISDNKVIKDSLNKTSVAKREAFMDMDRENFGEK---RK 416
Query: 469 KQKLKMLAEKGSL 481
K K A +G++
Sbjct: 417 INKSKRQANEGTI 429
>sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP8 PE=3 SV=1
Length = 442
Score = 334 bits (857), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 181/439 (41%), Positives = 275/439 (62%), Gaps = 10/439 (2%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LGL EW ++ + + +P+ +Q CIP+I++GKD +G A+TGSGKT AFA P+L
Sbjct: 1 MSFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPML 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
++DP G+ LV+TPTRELA Q+AEQF ALG+ +++R ++ GG+D++ Q+ L P
Sbjct: 61 AEWSKDPCGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PKN 236
H VIATPGR+ + D F R +++V+DEADR+L GF +L+ L P
Sbjct: 121 HFVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDEADRLLTPGFVPDLKTCMDLLPDPSK 180
Query: 237 RQTLLFSATMTSDLQTLLELSANKA--YFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294
RQTLLF+AT+T ++ L + + K + +E TL Q Y+F+P V++ YL
Sbjct: 181 RQTLLFTATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAYLWA 240
Query: 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354
+L+ D +SAIIFV+ ++ L +L LD + +LHS Q +R++AL RF++
Sbjct: 241 ILTH-PDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQA 299
Query: 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414
A +L+ATDVASRGLDIPTV++V+N+D+P DY+HRVGRTARAGR G +VS VT+ DV
Sbjct: 300 ARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVT 359
Query: 415 LIHEIEAVVGKQLEEFECKEQEVLSD--ITRVYKARRVATMKLMDDGFEEKAK-ERKKQK 471
+ IE VG ++E+++ E + + + +T A+R A + + + F E+ + +RKK
Sbjct: 360 RVTNIEERVGTKMEKYDLIEDDKVVEEYLTPASTAKRQAVLDMEAENFGERKRIQRKKAG 419
Query: 472 LKM-LAEKGSLKKRSEKRK 489
L + + K KR K K
Sbjct: 420 LDVDMKSKNKKPKRVAKGK 438
>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRP3 PE=3 SV=1
Length = 501
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ AL
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP3 PE=1 SV=2
Length = 501
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/436 (42%), Positives = 271/436 (62%), Gaps = 6/436 (1%)
Query: 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSG 109
+ N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSG
Sbjct: 71 NENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSG 130
Query: 110 KTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 169
KTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++
Sbjct: 131 KTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
Query: 170 TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229
QA+ LM +PH++IATPGR+ LE + KFLV+DEADR+LD+ F L +
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRI 248
Query: 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288
+ +P + R T LFSATMTS + L S ++TV+TL Q + +P +K
Sbjct: 249 LKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
+ YL+++L+ E +G ++ IIF T + LS L L+ A ALH +Q+QR+ +L
Sbjct: 309 NTYLIYLLN--EFIG-KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLD 365
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
FK+G+ +IL+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V
Sbjct: 366 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 409 TQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERK 468
+Q D++LI IE V+GK+L + + +L+ V KA M++ E+ A+ +
Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKG 485
Query: 469 KQKLKMLAEKGSLKKR 484
++ M E + +R
Sbjct: 486 RRGRMMTRENMDMGER 501
>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP8 PE=3 SV=2
Length = 433
Score = 332 bits (851), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 182/425 (42%), Positives = 267/425 (62%), Gaps = 16/425 (3%)
Query: 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL 119
++F LG+++W ++ + +R PT +Q CIP+IL G+D +G A+TGSGKT AFA P++
Sbjct: 1 MSFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMM 60
Query: 120 HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179
+ +EDP+G+ LV+TPTRELA Q+AEQF ALG+ ++++ VVVGG D++ QA + P
Sbjct: 61 TKWSEDPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSP 120
Query: 180 HVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KN 236
H +IATPGR+ +L D R KFLVLDEADR+L F +L F+ LP
Sbjct: 121 HFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPDASK 180
Query: 237 RQTLLFSATMTSDLQTLLEL---SANKAYFYEAYEGFKTV---ETLKQQYIFIPKNVKDV 290
RQTLLF+AT+T ++ L + K F V TL Y+F+P VK+
Sbjct: 181 RQTLLFTATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYVKEA 240
Query: 291 YLMHVL--SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348
YL ++L K E SAI+FV+ + +L L +LD +LHS QS+R ++LH
Sbjct: 241 YLHNILVSPKYEKA---SAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLH 297
Query: 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408
RF++G A +L+ATDVASRGLDIP V+LV+N DIP P DY+HRVGRTARAG+ G +VS V
Sbjct: 298 RFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIV 357
Query: 409 TQNDVDLIHEIEAVVGKQLEEF-ECKEQEVLSD-ITRVYKARRVATMKLMDDGFEEKAKE 466
++ DV+ I IE + K+++ E + +++ + ++ V A+R + + +GF EK K
Sbjct: 358 SEKDVERILAIENHINKKMDLLEEVNDDKIIKESLSIVTAAKRESVADMEKEGFGEKRKI 417
Query: 467 RKKQK 471
K+++
Sbjct: 418 NKRKR 422
>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=RRP3 PE=3 SV=2
Length = 539
Score = 331 bits (849), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 176/380 (46%), Positives = 245/380 (64%), Gaps = 9/380 (2%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
TF L L +++ + + +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL
Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183
Query: 121 RL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178
L A+ PY ALV+ PTREL +Q+ + F ALGS + LR +VGGMD++ QA+ LM +
Sbjct: 184 SLWHAQQPY--FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 241
Query: 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ 238
PHV++ATPGRI LE K+LV+DEADR+LD+ F L + + +P R
Sbjct: 242 PHVIVATPGRIMDHLEHTKGFS--LKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRT 299
Query: 239 TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298
T LFSATMT+ ++ L S + ++T + L Q + + K+ L+H+L+
Sbjct: 300 TYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLN- 358
Query: 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATIL 358
E MG +S I+F T +LL L AV LH SQSQRL +L++FKS QA IL
Sbjct: 359 -EFMG-KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANIL 416
Query: 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418
+ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S +TQ D+++
Sbjct: 417 VATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 476
Query: 419 IEAVVGKQLEEFECKEQEVL 438
IE+V+GK+L + + +EVL
Sbjct: 477 IESVLGKKLPKEDKPPKEVL 496
>sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RRP3 PE=3 SV=1
Length = 493
Score = 331 bits (848), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 185/418 (44%), Positives = 263/418 (62%), Gaps = 7/418 (1%)
Query: 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120
+FA L L +Q C+ L +PTP+Q IP L G DV+GLAQTGSGKTAAFA+PIL+
Sbjct: 74 SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILN 133
Query: 121 RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180
+L ED A V+ PTRELA Q+ E F +LGS + +R +VGGM+++ QA+ LM +PH
Sbjct: 134 KLWEDQQPYYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 193
Query: 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQT 239
++IATPGR+ LE KFLV+DEADR+LD+ F L + + +P K R T
Sbjct: 194 IIIATPGRLMDHLENTKGFS--LKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTT 251
Query: 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM 299
LFSATMTS + L S ++TV+TL Q + +P +K+ +L+++L+
Sbjct: 252 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN-- 309
Query: 300 EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359
E +G ++ IIF T + LS L L+ A ALH +Q+QR AL FK+G+ +IL+
Sbjct: 310 EFIG-KTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 368
Query: 360 ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419
ATDVA+RGLDIP+VD+V+NYDIP + Y+HRVGRTARAGR G ++S V+Q D++LI I
Sbjct: 369 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 428
Query: 420 EAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFEEKAKERKKQKLKMLAE 477
E V+GK+L + + +L+ V KA M+ M+ +EK K ++ +M+A+
Sbjct: 429 EEVLGKKLPKESVDKNIILTLRDSVDKANGEVVME-MNRRNKEKQARGKGRRGRMMAK 485
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,849,744
Number of Sequences: 539616
Number of extensions: 7929783
Number of successful extensions: 42594
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 365
Number of HSP's that attempted gapping in prelim test: 35633
Number of HSP's gapped (non-prelim): 3058
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)