Query 011100
Match_columns 493
No_of_seqs 354 out of 3481
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 4.2E-79 9.2E-84 550.9 33.3 398 53-455 54-451 (476)
2 KOG0340 ATP-dependent RNA heli 100.0 1.1E-78 2.3E-83 541.9 31.8 428 58-486 5-435 (442)
3 KOG0331 ATP-dependent RNA heli 100.0 1.9E-72 4.1E-77 541.8 35.4 369 59-430 90-467 (519)
4 KOG0338 ATP-dependent RNA heli 100.0 1E-69 2.2E-74 505.0 30.5 359 59-422 180-544 (691)
5 KOG0328 Predicted ATP-dependen 100.0 1.1E-69 2.5E-74 469.6 26.5 375 56-436 23-398 (400)
6 COG0513 SrmB Superfamily II DN 100.0 2E-67 4.4E-72 529.9 39.9 363 60-428 29-398 (513)
7 PRK04837 ATP-dependent RNA hel 100.0 1.2E-65 2.7E-70 512.1 39.8 378 58-441 6-392 (423)
8 KOG0326 ATP-dependent RNA heli 100.0 1E-67 2.2E-72 464.9 20.5 373 55-434 80-452 (459)
9 KOG0342 ATP-dependent RNA heli 100.0 7.5E-66 1.6E-70 478.8 32.6 369 58-433 80-456 (543)
10 KOG0333 U5 snRNP-like RNA heli 100.0 7.6E-66 1.6E-70 481.0 30.3 365 54-424 239-637 (673)
11 KOG0345 ATP-dependent RNA heli 100.0 8.2E-65 1.8E-69 468.7 34.4 367 60-430 4-383 (567)
12 PTZ00110 helicase; Provisional 100.0 2.1E-64 4.6E-69 513.1 38.7 371 56-430 126-503 (545)
13 PRK11776 ATP-dependent RNA hel 100.0 1.1E-63 2.3E-68 503.6 39.2 365 60-431 4-369 (460)
14 PRK11634 ATP-dependent RNA hel 100.0 1.6E-63 3.4E-68 510.6 40.7 374 58-437 4-378 (629)
15 PRK10590 ATP-dependent RNA hel 100.0 9.4E-64 2E-68 501.5 37.4 365 61-431 2-372 (456)
16 PRK04537 ATP-dependent RNA hel 100.0 3.2E-63 6.9E-68 505.9 37.7 369 60-433 9-386 (572)
17 PLN00206 DEAD-box ATP-dependen 100.0 4.8E-63 1E-67 502.0 37.7 364 57-425 118-489 (518)
18 KOG0347 RNA helicase [RNA proc 100.0 1.7E-63 3.7E-68 467.4 29.0 368 58-429 179-588 (731)
19 PRK01297 ATP-dependent RNA hel 100.0 1.1E-61 2.4E-66 490.0 43.7 377 56-439 83-469 (475)
20 KOG0346 RNA helicase [RNA proc 100.0 1.8E-62 3.9E-67 449.2 33.1 362 59-424 18-423 (569)
21 PRK11192 ATP-dependent RNA hel 100.0 3.7E-62 7.9E-67 489.6 35.9 363 61-429 2-370 (434)
22 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-62 3E-67 461.4 29.5 371 58-435 67-446 (758)
23 KOG0335 ATP-dependent RNA heli 100.0 4.7E-62 1E-66 461.5 28.9 368 56-426 70-459 (482)
24 KOG0348 ATP-dependent RNA heli 100.0 1.1E-61 2.3E-66 454.0 29.1 364 57-422 133-565 (708)
25 PTZ00424 helicase 45; Provisio 100.0 1.7E-59 3.7E-64 467.3 40.9 369 59-433 27-396 (401)
26 KOG0336 ATP-dependent RNA heli 100.0 7.3E-61 1.6E-65 434.7 25.8 365 55-425 214-586 (629)
27 KOG0341 DEAD-box protein abstr 100.0 2.2E-60 4.7E-65 428.9 14.6 360 56-422 166-540 (610)
28 KOG0339 ATP-dependent RNA heli 100.0 2.8E-58 6E-63 428.3 28.5 368 52-424 215-588 (731)
29 KOG0350 DEAD-box ATP-dependent 100.0 6.6E-58 1.4E-62 425.6 30.4 368 54-426 121-555 (620)
30 KOG0327 Translation initiation 100.0 1.6E-58 3.5E-63 418.9 24.7 370 59-436 25-395 (397)
31 KOG0332 ATP-dependent RNA heli 100.0 5.1E-58 1.1E-62 411.9 27.4 380 50-438 81-471 (477)
32 KOG0334 RNA helicase [RNA proc 100.0 1.1E-56 2.5E-61 453.6 27.9 366 56-423 361-732 (997)
33 KOG0337 ATP-dependent RNA heli 100.0 4.1E-56 8.9E-61 405.5 24.0 365 59-428 20-385 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 9.5E-55 2.1E-59 454.4 35.7 359 66-432 20-409 (742)
35 PLN03137 ATP-dependent DNA hel 100.0 3E-53 6.6E-58 439.6 36.4 338 65-420 442-796 (1195)
36 KOG4284 DEAD box protein [Tran 100.0 4.6E-54 1E-58 410.4 22.4 350 57-413 22-381 (980)
37 TIGR00614 recQ_fam ATP-depende 100.0 6E-52 1.3E-56 417.3 31.2 363 77-458 6-381 (470)
38 KOG0344 ATP-dependent RNA heli 100.0 4.3E-52 9.3E-57 396.1 25.5 363 59-425 131-509 (593)
39 PRK11057 ATP-dependent DNA hel 100.0 2.7E-50 5.8E-55 415.5 33.8 370 67-460 9-393 (607)
40 PRK02362 ski2-like helicase; P 100.0 4.7E-49 1E-53 416.5 31.5 334 61-412 2-398 (737)
41 TIGR01389 recQ ATP-dependent D 100.0 1.4E-48 3E-53 404.3 33.5 326 74-421 4-341 (591)
42 PRK13767 ATP-dependent helicas 100.0 4.3E-48 9.3E-53 412.5 32.0 338 67-409 18-396 (876)
43 PRK00254 ski2-like helicase; P 100.0 1.3E-47 2.9E-52 404.4 32.5 336 61-412 2-389 (720)
44 TIGR00580 mfd transcription-re 100.0 4.2E-46 9.2E-51 392.6 35.1 359 69-467 438-813 (926)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.4E-46 1.2E-50 380.7 31.4 319 78-410 12-390 (844)
46 COG0514 RecQ Superfamily II DN 100.0 1.4E-46 3.1E-51 369.6 24.7 329 74-422 8-348 (590)
47 COG1201 Lhr Lhr-like helicases 100.0 5.7E-46 1.2E-50 378.4 29.5 337 67-410 8-361 (814)
48 PRK01172 ski2-like helicase; P 100.0 1.9E-45 4.1E-50 386.7 29.4 333 61-412 2-379 (674)
49 PRK10689 transcription-repair 100.0 3.2E-45 7E-50 394.0 31.1 360 69-468 588-963 (1147)
50 PRK10917 ATP-dependent DNA hel 100.0 1.1E-44 2.4E-49 377.6 33.2 315 72-409 252-587 (681)
51 KOG0329 ATP-dependent RNA heli 100.0 1.3E-46 2.7E-51 321.9 14.2 330 60-430 42-375 (387)
52 TIGR00643 recG ATP-dependent D 100.0 3.5E-44 7.6E-49 371.6 32.6 318 69-409 223-564 (630)
53 PRK09751 putative ATP-dependen 100.0 3.1E-43 6.8E-48 380.2 30.0 323 102-432 1-408 (1490)
54 PRK09401 reverse gyrase; Revie 100.0 3.1E-41 6.8E-46 364.0 37.2 289 72-383 70-410 (1176)
55 COG1202 Superfamily II helicas 100.0 1.3E-42 2.8E-47 328.7 21.7 340 60-411 194-553 (830)
56 PHA02653 RNA helicase NPH-II; 100.0 1.8E-41 3.8E-46 346.0 29.7 317 85-420 167-523 (675)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-40 2.7E-45 347.8 31.1 309 86-414 6-339 (819)
58 COG1204 Superfamily II helicas 100.0 4.8E-41 1E-45 347.4 26.8 335 65-410 14-407 (766)
59 PRK12898 secA preprotein trans 100.0 8.4E-40 1.8E-44 328.3 33.2 323 78-413 100-588 (656)
60 PRK11664 ATP-dependent RNA hel 100.0 2.2E-40 4.7E-45 346.9 29.2 308 87-414 10-342 (812)
61 PRK14701 reverse gyrase; Provi 100.0 2.7E-40 5.8E-45 363.8 31.0 330 69-419 66-464 (1638)
62 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-39 2.3E-44 306.8 30.4 330 80-417 13-487 (542)
63 PHA02558 uvsW UvsW helicase; P 100.0 7.8E-40 1.7E-44 331.1 29.7 310 80-409 112-450 (501)
64 KOG0349 Putative DEAD-box RNA 100.0 2E-40 4.4E-45 303.7 20.6 280 127-409 285-613 (725)
65 TIGR01054 rgy reverse gyrase. 100.0 1.6E-38 3.4E-43 343.6 37.8 293 69-383 65-409 (1171)
66 KOG0351 ATP-dependent DNA heli 100.0 7.7E-40 1.7E-44 340.4 24.5 374 71-461 253-646 (941)
67 PRK09200 preprotein translocas 100.0 1.4E-38 3.1E-43 326.2 32.9 324 78-413 75-543 (790)
68 COG1205 Distinct helicase fami 100.0 3.9E-39 8.5E-44 337.9 28.2 340 67-411 55-422 (851)
69 KOG0352 ATP-dependent DNA heli 100.0 8.9E-40 1.9E-44 299.1 20.0 335 69-421 5-372 (641)
70 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-38 2.3E-43 320.9 26.7 337 78-419 106-499 (1230)
71 TIGR01587 cas3_core CRISPR-ass 100.0 4.4E-39 9.5E-44 315.3 23.6 302 99-412 1-337 (358)
72 TIGR03714 secA2 accessory Sec 100.0 1.3E-38 2.8E-43 323.3 25.9 324 78-413 67-539 (762)
73 TIGR00963 secA preprotein tran 100.0 1.7E-37 3.7E-42 313.1 33.4 324 78-414 53-520 (745)
74 KOG0353 ATP-dependent DNA heli 100.0 4.5E-38 9.8E-43 284.0 23.0 383 63-461 74-513 (695)
75 KOG0947 Cytoplasmic exosomal R 100.0 3.9E-37 8.6E-42 306.2 31.1 371 78-467 294-778 (1248)
76 PRK13766 Hef nuclease; Provisi 100.0 1.8E-36 3.8E-41 324.8 32.6 327 80-414 13-482 (773)
77 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-36 2.4E-41 294.8 27.3 295 86-396 1-357 (357)
78 COG1200 RecG RecG-like helicas 100.0 7.1E-36 1.5E-40 293.1 29.5 321 68-412 248-592 (677)
79 KOG0354 DEAD-box like helicase 100.0 7.5E-36 1.6E-40 297.2 27.2 328 79-414 59-532 (746)
80 TIGR00603 rad25 DNA repair hel 100.0 2.1E-35 4.5E-40 300.1 24.4 312 81-414 254-610 (732)
81 KOG0951 RNA helicase BRR2, DEA 100.0 2.6E-35 5.6E-40 300.1 23.9 378 31-418 259-709 (1674)
82 PRK11131 ATP-dependent RNA hel 100.0 1E-34 2.2E-39 309.0 28.3 304 85-414 77-414 (1294)
83 PRK04914 ATP-dependent helicas 100.0 2.1E-33 4.5E-38 295.3 32.9 344 82-432 152-624 (956)
84 PRK05580 primosome assembly pr 100.0 5.6E-33 1.2E-37 288.6 32.8 313 82-414 144-552 (679)
85 COG1197 Mfd Transcription-repa 100.0 3E-33 6.4E-38 289.5 27.0 360 74-470 587-959 (1139)
86 KOG0948 Nuclear exosomal RNA h 100.0 1.2E-33 2.7E-38 274.9 22.0 314 78-411 126-539 (1041)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.8E-33 3.9E-38 300.7 24.7 306 88-414 73-407 (1283)
88 COG4581 Superfamily II RNA hel 100.0 2.3E-32 5E-37 282.9 27.8 322 75-412 113-538 (1041)
89 PRK13104 secA preprotein trans 100.0 6.2E-31 1.3E-35 269.3 32.7 323 78-413 79-589 (896)
90 TIGR00595 priA primosomal prot 100.0 4E-31 8.6E-36 265.3 29.2 290 101-410 1-380 (505)
91 PRK12904 preprotein translocas 100.0 1.3E-30 2.9E-35 266.7 32.6 323 78-413 78-575 (830)
92 PRK09694 helicase Cas3; Provis 100.0 1.2E-30 2.5E-35 273.0 31.0 312 80-400 284-664 (878)
93 cd00268 DEADc DEAD-box helicas 100.0 3.7E-31 7.9E-36 238.2 23.4 200 62-264 1-202 (203)
94 PRK12899 secA preprotein trans 100.0 5.9E-30 1.3E-34 261.6 32.7 151 63-218 65-228 (970)
95 PRK12906 secA preprotein trans 100.0 6.1E-31 1.3E-35 268.1 25.0 323 78-413 77-555 (796)
96 COG1061 SSL2 DNA or RNA helica 100.0 4.6E-31 1E-35 261.8 22.8 290 81-398 35-376 (442)
97 KOG0950 DNA polymerase theta/e 100.0 1.2E-30 2.6E-35 262.0 16.7 343 66-420 207-620 (1008)
98 PRK13107 preprotein translocas 100.0 1.4E-28 3E-33 251.3 28.6 323 78-413 79-593 (908)
99 PRK11448 hsdR type I restricti 100.0 2E-28 4.2E-33 263.6 30.1 309 82-400 413-802 (1123)
100 COG4098 comFA Superfamily II D 100.0 5.8E-28 1.3E-32 216.3 26.9 313 82-421 97-426 (441)
101 PLN03142 Probable chromatin-re 100.0 7.3E-28 1.6E-32 254.4 25.9 319 82-412 169-600 (1033)
102 COG1643 HrpA HrpA-like helicas 100.0 2.4E-26 5.2E-31 237.1 25.7 312 84-414 52-390 (845)
103 PF00270 DEAD: DEAD/DEAH box h 100.0 4.6E-27 9.9E-32 205.2 17.0 165 84-252 1-168 (169)
104 KOG0922 DEAH-box RNA helicase 99.9 2.4E-25 5.2E-30 217.0 22.0 311 84-414 53-393 (674)
105 PRK12900 secA preprotein trans 99.9 5.1E-25 1.1E-29 226.2 24.3 124 287-413 582-713 (1025)
106 COG1203 CRISPR-associated heli 99.9 2.2E-25 4.8E-30 234.2 20.8 326 81-414 194-553 (733)
107 KOG0385 Chromatin remodeling c 99.9 1.4E-24 3E-29 213.0 24.5 318 81-413 166-601 (971)
108 COG1110 Reverse gyrase [DNA re 99.9 4.3E-23 9.4E-28 209.0 31.9 288 71-383 71-417 (1187)
109 KOG0923 mRNA splicing factor A 99.9 2.4E-24 5.1E-29 208.1 20.8 314 79-410 262-605 (902)
110 PRK12326 preprotein translocas 99.9 2.6E-23 5.6E-28 208.0 27.2 320 78-412 75-548 (764)
111 TIGR00631 uvrb excinuclease AB 99.9 2.7E-23 5.9E-28 213.6 24.5 132 288-421 427-563 (655)
112 KOG0920 ATP-dependent RNA heli 99.9 5.6E-23 1.2E-27 211.3 25.6 320 82-414 173-547 (924)
113 COG1198 PriA Primosomal protei 99.9 1.2E-22 2.5E-27 206.9 26.3 320 81-419 197-611 (730)
114 KOG0949 Predicted helicase, DE 99.9 9.9E-23 2.1E-27 204.5 21.7 161 83-248 512-673 (1330)
115 TIGR01407 dinG_rel DnaQ family 99.9 2.3E-21 5E-26 208.3 32.9 333 67-410 231-813 (850)
116 KOG0924 mRNA splicing factor A 99.9 4.8E-23 1E-27 199.5 17.6 310 80-411 354-697 (1042)
117 PRK13103 secA preprotein trans 99.9 3.1E-22 6.8E-27 205.2 24.4 321 78-412 79-592 (913)
118 PRK05298 excinuclease ABC subu 99.9 4.7E-21 1E-25 198.8 30.9 145 288-434 431-589 (652)
119 TIGR00348 hsdR type I site-spe 99.9 3.1E-21 6.8E-26 200.9 27.2 303 83-398 239-634 (667)
120 KOG0384 Chromodomain-helicase 99.9 1.1E-22 2.3E-27 209.1 15.8 318 81-412 369-812 (1373)
121 COG4096 HsdR Type I site-speci 99.9 4.5E-22 9.8E-27 198.7 16.5 302 80-399 163-526 (875)
122 CHL00122 secA preprotein trans 99.9 3.9E-20 8.5E-25 189.0 30.8 282 78-371 73-491 (870)
123 PRK12903 secA preprotein trans 99.9 2.2E-20 4.8E-25 189.6 28.6 321 78-412 75-540 (925)
124 KOG0387 Transcription-coupled 99.9 4.6E-21 9.9E-26 189.4 23.0 322 81-414 204-661 (923)
125 COG0556 UvrB Helicase subunit 99.9 4.7E-20 1E-24 175.1 24.4 167 236-411 386-557 (663)
126 KOG0390 DNA repair protein, SN 99.9 1E-19 2.2E-24 184.4 28.2 316 83-407 239-701 (776)
127 smart00487 DEXDc DEAD-like hel 99.9 2.8E-20 6.1E-25 166.7 20.0 185 77-265 3-189 (201)
128 PRK12902 secA preprotein trans 99.9 3.3E-19 7.1E-24 181.9 29.7 281 78-371 82-506 (939)
129 KOG0926 DEAH-box RNA helicase 99.9 1.8E-20 3.9E-25 184.8 19.4 298 90-410 264-703 (1172)
130 KOG4150 Predicted ATP-dependen 99.9 1.1E-20 2.4E-25 179.9 16.5 356 74-434 278-665 (1034)
131 KOG1123 RNA polymerase II tran 99.8 1.5E-20 3.2E-25 176.6 12.6 314 81-416 301-658 (776)
132 KOG0925 mRNA splicing factor A 99.8 1.1E-19 2.3E-24 170.4 16.0 329 59-411 24-387 (699)
133 PRK07246 bifunctional ATP-depe 99.8 4.4E-18 9.6E-23 180.4 30.4 347 78-443 242-817 (820)
134 KOG0389 SNF2 family DNA-depend 99.8 4.9E-19 1.1E-23 175.0 21.3 321 83-413 400-890 (941)
135 KOG0953 Mitochondrial RNA heli 99.8 7.5E-20 1.6E-24 174.2 14.8 282 99-428 193-490 (700)
136 KOG1000 Chromatin remodeling p 99.8 2.2E-17 4.8E-22 155.3 26.4 316 81-411 197-603 (689)
137 KOG0392 SNF2 family DNA-depend 99.8 1.6E-18 3.5E-23 178.1 16.6 320 82-412 975-1455(1549)
138 cd00079 HELICc Helicase superf 99.8 1.3E-18 2.8E-23 144.8 12.9 120 287-407 12-131 (131)
139 TIGR03117 cas_csf4 CRISPR-asso 99.8 5.7E-16 1.2E-20 157.2 30.5 104 296-401 462-604 (636)
140 PRK08074 bifunctional ATP-depe 99.8 3.9E-16 8.4E-21 168.7 30.9 117 294-410 742-892 (928)
141 PRK12901 secA preprotein trans 99.8 8.7E-17 1.9E-21 166.0 23.0 124 287-413 612-743 (1112)
142 COG4889 Predicted helicase [Ge 99.8 1.1E-18 2.3E-23 173.8 7.4 330 60-399 140-573 (1518)
143 PF00271 Helicase_C: Helicase 99.8 9.1E-19 2E-23 131.1 5.0 78 322-399 1-78 (78)
144 cd00046 DEXDc DEAD-like helica 99.7 5E-17 1.1E-21 137.0 16.0 144 98-246 1-144 (144)
145 KOG0386 Chromatin remodeling c 99.7 3.2E-17 6.8E-22 166.2 13.6 316 78-410 390-835 (1157)
146 PF04851 ResIII: Type III rest 99.7 4.2E-17 9.2E-22 144.2 11.3 155 82-247 3-183 (184)
147 KOG0951 RNA helicase BRR2, DEA 99.7 5E-16 1.1E-20 160.5 19.4 312 81-418 1142-1501(1674)
148 TIGR02562 cas3_yersinia CRISPR 99.7 4.5E-16 9.9E-21 161.6 19.1 322 74-400 400-881 (1110)
149 KOG1002 Nucleotide excision re 99.7 1.3E-14 2.7E-19 136.9 20.6 108 306-413 640-751 (791)
150 KOG0388 SNF2 family DNA-depend 99.7 1.5E-14 3.3E-19 141.6 21.1 127 285-412 1026-1155(1185)
151 COG1199 DinG Rad3-related DNA 99.6 9.7E-14 2.1E-18 146.8 27.3 115 293-410 468-616 (654)
152 PRK14873 primosome assembly pr 99.6 1.7E-13 3.8E-18 141.1 25.4 138 102-257 165-312 (665)
153 smart00490 HELICc helicase sup 99.6 8.8E-16 1.9E-20 116.2 6.3 81 319-399 2-82 (82)
154 PRK11747 dinG ATP-dependent DN 99.6 6.8E-13 1.5E-17 139.3 29.0 113 294-410 525-673 (697)
155 KOG0391 SNF2 family DNA-depend 99.6 7.9E-14 1.7E-18 143.0 21.0 124 287-411 1260-1387(1958)
156 TIGR00604 rad3 DNA repair heli 99.6 4E-13 8.8E-18 142.1 26.7 74 78-151 6-83 (705)
157 PF06862 DUF1253: Protein of u 99.6 5.6E-13 1.2E-17 128.9 23.8 293 127-419 36-423 (442)
158 KOG4439 RNA polymerase II tran 99.6 1.4E-13 3.1E-18 135.0 17.6 114 294-407 736-852 (901)
159 PF02399 Herpes_ori_bp: Origin 99.5 1.7E-13 3.8E-18 139.2 15.9 287 99-410 51-387 (824)
160 COG0553 HepA Superfamily II DN 99.5 8.2E-13 1.8E-17 145.3 18.1 325 80-412 336-823 (866)
161 KOG1015 Transcription regulato 99.5 1.3E-12 2.7E-17 132.0 17.4 121 287-408 1126-1272(1567)
162 COG0653 SecA Preprotein transl 99.5 8.9E-13 1.9E-17 135.0 16.6 322 78-412 77-546 (822)
163 COG0610 Type I site-specific r 99.4 4.2E-11 9E-16 129.2 27.1 299 98-409 274-651 (962)
164 KOG2340 Uncharacterized conser 99.4 8.8E-12 1.9E-16 119.0 15.2 338 81-419 215-676 (698)
165 PF00176 SNF2_N: SNF2 family N 99.4 5.4E-12 1.2E-16 120.7 12.9 154 86-248 1-174 (299)
166 KOG0921 Dosage compensation co 99.3 1.3E-11 2.9E-16 124.4 14.3 315 87-413 383-776 (1282)
167 PF07652 Flavi_DEAD: Flaviviru 99.3 4.5E-12 9.7E-17 102.3 8.0 136 96-250 3-140 (148)
168 smart00488 DEXDc2 DEAD-like he 99.2 2E-10 4.4E-15 107.9 12.7 73 78-151 5-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.2 2E-10 4.4E-15 107.9 12.7 73 78-151 5-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 99.1 5E-10 1.1E-14 102.2 12.3 133 78-218 74-210 (266)
171 KOG0952 DNA/RNA helicase MER3/ 99.0 9.3E-11 2E-15 120.6 1.5 168 82-255 927-1104(1230)
172 KOG1016 Predicted DNA helicase 99.0 3.9E-08 8.4E-13 98.3 17.9 109 305-413 720-849 (1387)
173 PRK15483 type III restriction- 98.7 1.1E-07 2.4E-12 100.4 13.3 146 98-248 60-240 (986)
174 PF13086 AAA_11: AAA domain; P 98.6 2.1E-07 4.6E-12 85.4 10.4 68 82-150 1-75 (236)
175 KOG1133 Helicase of the DEAD s 98.6 2.6E-05 5.6E-10 78.1 24.6 114 295-411 620-780 (821)
176 COG3587 Restriction endonuclea 98.6 7.7E-07 1.7E-11 90.7 13.1 72 353-424 482-566 (985)
177 PF02562 PhoH: PhoH-like prote 98.5 9.3E-08 2E-12 83.9 4.6 147 80-245 2-155 (205)
178 PF13872 AAA_34: P-loop contai 98.5 1.3E-06 2.9E-11 80.1 11.2 172 65-250 26-224 (303)
179 PF13604 AAA_30: AAA domain; P 98.5 6.7E-07 1.5E-11 79.2 9.0 123 82-245 1-130 (196)
180 TIGR00596 rad1 DNA repair prot 98.4 6.6E-06 1.4E-10 87.1 16.5 68 177-247 6-73 (814)
181 KOG1001 Helicase-like transcri 98.4 4.3E-07 9.2E-12 93.8 7.3 101 306-406 541-643 (674)
182 KOG1802 RNA helicase nonsense 98.4 1.6E-06 3.5E-11 85.9 10.7 85 74-164 402-486 (935)
183 KOG1803 DNA helicase [Replicat 98.3 3.7E-06 8E-11 83.0 9.2 66 81-149 184-250 (649)
184 PF12340 DUF3638: Protein of u 98.3 1.1E-05 2.3E-10 71.6 11.2 155 60-219 3-186 (229)
185 PRK10536 hypothetical protein; 98.3 1.5E-06 3.3E-11 78.4 5.8 142 78-242 55-209 (262)
186 TIGR01447 recD exodeoxyribonuc 98.2 1.3E-05 2.8E-10 82.5 12.2 143 84-245 147-295 (586)
187 PF13307 Helicase_C_2: Helicas 98.2 2.2E-06 4.8E-11 73.8 5.5 106 303-410 8-149 (167)
188 TIGR01448 recD_rel helicase, p 98.2 1.9E-05 4.1E-10 83.7 13.1 131 78-245 320-452 (720)
189 PF13245 AAA_19: Part of AAA d 98.2 7.7E-06 1.7E-10 59.8 7.1 58 90-148 2-62 (76)
190 TIGR00376 DNA helicase, putati 98.2 2E-05 4.4E-10 82.2 12.6 67 81-150 156-223 (637)
191 PRK10875 recD exonuclease V su 98.1 2.1E-05 4.6E-10 81.2 11.3 144 83-245 153-301 (615)
192 PF09848 DUF2075: Uncharacteri 98.1 1.2E-05 2.5E-10 78.5 8.9 108 99-232 3-117 (352)
193 COG3421 Uncharacterized protei 97.9 0.00011 2.4E-09 72.5 10.7 145 102-248 2-167 (812)
194 COG1875 NYN ribonuclease and A 97.8 0.00016 3.4E-09 67.6 9.7 65 77-141 223-289 (436)
195 PRK13889 conjugal transfer rel 97.8 0.00035 7.5E-09 75.8 13.4 62 78-143 343-405 (988)
196 KOG1805 DNA replication helica 97.7 0.00014 3E-09 75.8 8.8 126 80-219 667-810 (1100)
197 PF00580 UvrD-helicase: UvrD/R 97.7 0.00011 2.3E-09 70.8 7.5 68 83-152 1-69 (315)
198 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00073 1.6E-08 72.2 14.0 61 81-144 351-412 (744)
199 KOG1132 Helicase of the DEAD s 97.6 0.00051 1.1E-08 71.1 10.6 71 82-152 21-134 (945)
200 PRK13826 Dtr system oriT relax 97.5 0.0013 2.7E-08 72.0 13.6 137 67-245 367-505 (1102)
201 PRK12723 flagellar biosynthesi 97.5 0.00084 1.8E-08 65.5 11.0 129 98-257 175-309 (388)
202 PRK14974 cell division protein 97.5 0.0025 5.4E-08 61.0 13.4 130 99-257 142-275 (336)
203 PF13401 AAA_22: AAA domain; P 97.5 0.0015 3.2E-08 53.7 10.4 22 97-118 4-25 (131)
204 PRK06526 transposase; Provisio 97.4 0.00099 2.1E-08 61.4 9.2 39 93-134 94-132 (254)
205 KOG0298 DEAD box-containing he 97.4 0.00045 9.7E-09 74.1 7.7 152 97-253 374-557 (1394)
206 TIGR02760 TraI_TIGR conjugativ 97.4 0.0092 2E-07 70.3 18.7 135 82-245 429-566 (1960)
207 PRK04296 thymidine kinase; Pro 97.3 0.00032 6.8E-09 61.9 5.3 36 98-136 3-38 (190)
208 PRK08181 transposase; Validate 97.3 0.0022 4.8E-08 59.5 10.5 58 84-145 89-150 (269)
209 KOG1131 RNA polymerase II tran 97.3 0.0034 7.4E-08 61.3 11.9 74 78-151 12-90 (755)
210 PRK14722 flhF flagellar biosyn 97.2 0.0037 8.1E-08 60.5 11.7 165 61-257 82-269 (374)
211 KOG0383 Predicted helicase [Ge 97.2 0.0001 2.2E-09 75.7 0.8 75 291-367 619-696 (696)
212 PRK06921 hypothetical protein; 97.1 0.0067 1.4E-07 56.4 11.9 45 97-144 117-161 (266)
213 smart00492 HELICc3 helicase su 97.1 0.0024 5.2E-08 53.0 7.9 51 333-383 26-79 (141)
214 cd00009 AAA The AAA+ (ATPases 97.1 0.004 8.6E-08 52.0 9.5 18 97-114 19-36 (151)
215 KOG0989 Replication factor C, 97.1 0.0015 3.3E-08 59.8 7.0 45 203-248 127-171 (346)
216 PRK11889 flhF flagellar biosyn 97.1 0.0074 1.6E-07 58.3 11.6 129 98-258 242-375 (436)
217 PF05970 PIF1: PIF1-like helic 97.0 0.0015 3.3E-08 63.9 6.9 60 82-144 1-66 (364)
218 PF13871 Helicase_C_4: Helicas 97.0 0.0011 2.3E-08 61.1 5.3 78 345-422 52-141 (278)
219 PF00448 SRP54: SRP54-type pro 97.0 0.014 3.1E-07 51.5 12.1 123 100-250 4-129 (196)
220 smart00491 HELICc2 helicase su 96.9 0.0026 5.6E-08 52.9 6.7 69 341-409 31-137 (142)
221 smart00382 AAA ATPases associa 96.9 0.0013 2.8E-08 54.5 5.0 41 97-140 2-42 (148)
222 PF03354 Terminase_1: Phage Te 96.9 0.0038 8.1E-08 63.6 8.9 70 85-154 1-80 (477)
223 PRK07952 DNA replication prote 96.9 0.014 3E-07 53.4 11.4 41 98-142 100-140 (244)
224 PF14617 CMS1: U3-containing 9 96.9 0.0027 5.9E-08 57.7 6.5 86 127-216 125-212 (252)
225 KOG0738 AAA+-type ATPase [Post 96.8 0.013 2.8E-07 55.6 11.0 59 56-114 179-262 (491)
226 cd01120 RecA-like_NTPases RecA 96.8 0.013 2.9E-07 49.9 10.6 38 100-140 2-39 (165)
227 PF05127 Helicase_RecD: Helica 96.8 0.0007 1.5E-08 58.1 2.3 124 101-247 1-124 (177)
228 PRK05707 DNA polymerase III su 96.8 0.0054 1.2E-07 58.8 8.4 36 83-118 4-43 (328)
229 COG1419 FlhF Flagellar GTP-bin 96.8 0.0051 1.1E-07 59.2 8.1 130 97-257 203-335 (407)
230 PRK10919 ATP-dependent DNA hel 96.8 0.0028 6.1E-08 67.2 7.0 70 82-153 2-72 (672)
231 PHA02533 17 large terminase pr 96.8 0.01 2.2E-07 60.7 10.5 71 82-153 59-129 (534)
232 cd01124 KaiC KaiC is a circadi 96.8 0.01 2.2E-07 52.1 9.5 48 100-151 2-49 (187)
233 PRK05703 flhF flagellar biosyn 96.7 0.02 4.4E-07 57.0 12.4 128 97-257 221-354 (424)
234 PRK12377 putative replication 96.7 0.013 2.8E-07 53.7 10.0 45 98-146 102-146 (248)
235 PRK11054 helD DNA helicase IV; 96.7 0.0066 1.4E-07 64.1 9.1 78 81-160 195-273 (684)
236 PRK14086 dnaA chromosomal repl 96.7 0.028 6E-07 57.9 12.8 108 99-251 316-425 (617)
237 PRK12323 DNA polymerase III su 96.7 0.0074 1.6E-07 62.0 8.6 54 203-257 122-175 (700)
238 PRK08727 hypothetical protein; 96.7 0.009 1.9E-07 54.6 8.5 35 98-135 42-76 (233)
239 PRK13709 conjugal transfer nic 96.6 0.014 3E-07 67.2 11.6 62 82-144 967-1032(1747)
240 PRK08769 DNA polymerase III su 96.6 0.018 3.8E-07 54.9 10.3 37 81-117 3-46 (319)
241 TIGR01075 uvrD DNA helicase II 96.6 0.0076 1.6E-07 64.8 8.8 71 81-153 3-74 (715)
242 PRK00149 dnaA chromosomal repl 96.6 0.0077 1.7E-07 60.9 8.3 46 98-145 149-194 (450)
243 COG1484 DnaC DNA replication p 96.6 0.0075 1.6E-07 55.6 7.5 50 96-149 104-153 (254)
244 PF00308 Bac_DnaA: Bacterial d 96.6 0.0053 1.2E-07 55.4 6.2 107 99-250 36-144 (219)
245 PRK14956 DNA polymerase III su 96.6 0.0068 1.5E-07 60.4 7.4 19 100-118 43-61 (484)
246 COG1444 Predicted P-loop ATPas 96.5 0.022 4.9E-07 59.5 11.3 144 80-247 212-357 (758)
247 PRK14712 conjugal transfer nic 96.5 0.015 3.3E-07 66.0 10.7 62 82-144 835-900 (1623)
248 TIGR01547 phage_term_2 phage t 96.5 0.012 2.5E-07 58.7 9.1 135 99-248 3-142 (396)
249 PRK05642 DNA replication initi 96.5 0.012 2.7E-07 53.7 8.4 44 204-247 96-140 (234)
250 PRK07003 DNA polymerase III su 96.5 0.01 2.3E-07 61.9 8.4 39 204-243 118-156 (830)
251 PHA02544 44 clamp loader, smal 96.5 0.02 4.3E-07 55.1 10.0 39 205-243 100-138 (316)
252 PRK06835 DNA replication prote 96.5 0.024 5.2E-07 54.3 10.3 45 97-145 183-227 (329)
253 PRK06893 DNA replication initi 96.5 0.011 2.3E-07 53.9 7.7 45 204-248 90-136 (229)
254 PRK14087 dnaA chromosomal repl 96.5 0.015 3.4E-07 58.4 9.4 49 98-148 142-190 (450)
255 PRK08116 hypothetical protein; 96.4 0.014 3.1E-07 54.3 8.6 43 99-145 116-158 (268)
256 TIGR00362 DnaA chromosomal rep 96.4 0.0097 2.1E-07 59.4 7.9 44 98-143 137-180 (405)
257 COG2256 MGS1 ATPase related to 96.4 0.014 3.1E-07 55.7 8.3 19 98-116 49-67 (436)
258 TIGR02881 spore_V_K stage V sp 96.4 0.022 4.8E-07 53.0 9.6 19 98-116 43-61 (261)
259 PF05872 DUF853: Bacterial pro 96.4 0.0069 1.5E-07 58.9 6.2 53 202-254 251-308 (502)
260 TIGR01074 rep ATP-dependent DN 96.4 0.008 1.7E-07 64.2 7.4 69 83-153 2-71 (664)
261 CHL00181 cbbX CbbX; Provisiona 96.4 0.032 6.9E-07 52.6 10.6 21 97-117 59-79 (287)
262 PF13177 DNA_pol3_delta2: DNA 96.4 0.036 7.8E-07 47.4 10.0 51 203-254 100-150 (162)
263 PRK08084 DNA replication initi 96.4 0.014 3.1E-07 53.3 7.9 36 97-135 45-80 (235)
264 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.016 3.5E-07 52.7 8.3 20 97-116 38-57 (226)
265 PRK09183 transposase/IS protei 96.4 0.025 5.5E-07 52.4 9.6 46 94-143 99-144 (259)
266 PRK11773 uvrD DNA-dependent he 96.3 0.0078 1.7E-07 64.7 7.0 71 81-153 8-79 (721)
267 PRK07764 DNA polymerase III su 96.3 0.017 3.7E-07 62.1 9.4 39 204-243 119-157 (824)
268 PRK06995 flhF flagellar biosyn 96.3 0.023 5E-07 57.0 9.6 25 97-121 256-280 (484)
269 PRK13833 conjugal transfer pro 96.3 0.01 2.3E-07 56.4 7.0 65 74-141 122-187 (323)
270 COG3973 Superfamily I DNA and 96.3 0.017 3.7E-07 57.9 8.5 89 65-153 187-285 (747)
271 PRK06731 flhF flagellar biosyn 96.3 0.055 1.2E-06 50.2 11.3 128 98-257 76-208 (270)
272 cd01122 GP4d_helicase GP4d_hel 96.3 0.017 3.6E-07 54.3 8.2 79 70-151 3-81 (271)
273 PRK14964 DNA polymerase III su 96.3 0.031 6.6E-07 56.4 10.4 40 203-243 114-153 (491)
274 PRK14960 DNA polymerase III su 96.3 0.016 3.5E-07 59.8 8.3 39 204-243 117-155 (702)
275 PRK14958 DNA polymerase III su 96.2 0.031 6.8E-07 57.0 10.0 39 204-243 118-156 (509)
276 TIGR02782 TrbB_P P-type conjug 96.2 0.016 3.5E-07 54.8 7.4 67 72-141 108-175 (299)
277 COG4626 Phage terminase-like p 96.1 0.037 8E-07 55.4 9.8 147 82-244 61-223 (546)
278 TIGR02760 TraI_TIGR conjugativ 96.1 0.031 6.6E-07 66.1 10.8 62 81-144 1018-1084(1960)
279 PRK13894 conjugal transfer ATP 96.1 0.014 3.1E-07 55.6 6.6 67 71-140 123-190 (319)
280 PRK09111 DNA polymerase III su 96.1 0.029 6.4E-07 58.2 9.3 41 202-243 129-169 (598)
281 PRK11331 5-methylcytosine-spec 96.1 0.023 5E-07 56.1 8.1 32 84-115 181-212 (459)
282 PRK12402 replication factor C 96.1 0.034 7.3E-07 54.0 9.4 40 203-243 123-162 (337)
283 PRK14951 DNA polymerase III su 96.1 0.023 5E-07 59.0 8.4 40 203-243 122-161 (618)
284 TIGR01425 SRP54_euk signal rec 96.1 0.12 2.7E-06 51.0 13.0 60 99-164 102-163 (429)
285 PRK08903 DnaA regulatory inact 96.0 0.027 5.9E-07 51.2 8.1 41 206-247 91-132 (227)
286 PRK00771 signal recognition pa 96.0 0.059 1.3E-06 53.7 10.9 127 99-255 97-226 (437)
287 PRK04195 replication factor C 96.0 0.033 7.2E-07 56.8 9.4 19 97-115 39-57 (482)
288 PRK12724 flagellar biosynthesi 96.0 0.079 1.7E-06 52.0 11.4 125 99-257 225-356 (432)
289 PHA03333 putative ATPase subun 96.0 0.093 2E-06 54.2 12.2 69 84-154 171-242 (752)
290 PRK14088 dnaA chromosomal repl 96.0 0.04 8.6E-07 55.4 9.7 45 98-144 131-175 (440)
291 PRK06871 DNA polymerase III su 96.0 0.03 6.5E-07 53.4 8.3 43 203-246 105-147 (325)
292 PLN03025 replication factor C 96.0 0.065 1.4E-06 51.5 10.8 39 205-245 99-137 (319)
293 PRK06964 DNA polymerase III su 96.0 0.045 9.8E-07 52.7 9.5 40 83-123 2-46 (342)
294 PRK12422 chromosomal replicati 95.9 0.042 9.1E-07 55.1 9.4 109 98-253 142-252 (445)
295 PRK08691 DNA polymerase III su 95.9 0.049 1.1E-06 56.8 10.0 40 203-243 117-156 (709)
296 PF00004 AAA: ATPase family as 95.9 0.083 1.8E-06 43.1 9.8 16 100-115 1-16 (132)
297 TIGR02880 cbbX_cfxQ probable R 95.9 0.028 6.1E-07 52.9 7.7 20 97-116 58-77 (284)
298 COG2805 PilT Tfp pilus assembl 95.9 0.018 3.9E-07 52.9 5.9 51 57-126 103-153 (353)
299 PRK14949 DNA polymerase III su 95.9 0.046 9.9E-07 58.4 9.7 38 204-242 118-155 (944)
300 PRK07994 DNA polymerase III su 95.9 0.035 7.6E-07 57.8 8.7 38 204-242 118-155 (647)
301 PRK05580 primosome assembly pr 95.9 0.072 1.6E-06 56.7 11.2 95 285-381 172-267 (679)
302 PF05876 Terminase_GpA: Phage 95.8 0.023 5E-07 58.8 7.3 70 82-153 16-88 (557)
303 TIGR02785 addA_Gpos recombinat 95.8 0.022 4.7E-07 64.8 7.7 68 83-152 2-69 (1232)
304 PRK08451 DNA polymerase III su 95.8 0.069 1.5E-06 54.5 10.3 40 203-243 115-154 (535)
305 COG4962 CpaF Flp pilus assembl 95.8 0.024 5.1E-07 53.4 6.3 61 78-142 153-214 (355)
306 PRK07993 DNA polymerase III su 95.7 0.028 6E-07 54.2 7.0 36 83-118 3-45 (334)
307 TIGR00595 priA primosomal prot 95.7 0.064 1.4E-06 54.9 10.0 95 285-381 7-102 (505)
308 PRK14961 DNA polymerase III su 95.7 0.036 7.8E-07 54.3 7.9 40 203-243 117-156 (363)
309 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.033 7.1E-07 51.1 7.2 53 96-152 20-72 (237)
310 PF05496 RuvB_N: Holliday junc 95.7 0.025 5.5E-07 50.2 6.0 18 98-115 51-68 (233)
311 PRK05563 DNA polymerase III su 95.7 0.08 1.7E-06 54.9 10.6 21 98-118 39-59 (559)
312 PRK14952 DNA polymerase III su 95.7 0.065 1.4E-06 55.4 9.8 40 203-243 116-155 (584)
313 PRK05896 DNA polymerase III su 95.7 0.07 1.5E-06 54.9 9.9 40 203-243 117-156 (605)
314 PHA03368 DNA packaging termina 95.7 0.11 2.4E-06 53.5 11.1 134 98-248 255-392 (738)
315 PRK14969 DNA polymerase III su 95.7 0.075 1.6E-06 54.7 10.2 40 203-243 117-156 (527)
316 PF03969 AFG1_ATPase: AFG1-lik 95.7 0.12 2.7E-06 50.2 11.1 110 97-250 62-172 (362)
317 PRK14721 flhF flagellar biosyn 95.7 0.039 8.4E-07 54.5 7.7 131 97-257 191-323 (420)
318 PRK14723 flhF flagellar biosyn 95.7 0.055 1.2E-06 57.2 9.2 23 98-120 186-208 (767)
319 KOG0991 Replication factor C, 95.5 0.026 5.5E-07 49.9 5.2 41 204-245 112-152 (333)
320 TIGR01073 pcrA ATP-dependent D 95.5 0.041 8.9E-07 59.4 8.0 71 81-153 3-74 (726)
321 PRK07471 DNA polymerase III su 95.5 0.12 2.5E-06 50.6 10.3 43 203-246 139-181 (365)
322 PRK14965 DNA polymerase III su 95.5 0.09 2E-06 54.8 10.0 40 203-243 117-156 (576)
323 KOG1513 Nuclear helicase MOP-3 95.4 0.0089 1.9E-07 61.4 2.4 158 82-246 264-454 (1300)
324 PRK06090 DNA polymerase III su 95.4 0.11 2.5E-06 49.4 9.7 51 203-254 106-156 (319)
325 PRK09112 DNA polymerase III su 95.4 0.18 3.8E-06 49.0 11.2 42 203-245 139-180 (351)
326 COG2909 MalT ATP-dependent tra 95.4 0.045 9.7E-07 57.4 7.3 42 207-248 131-172 (894)
327 COG2804 PulE Type II secretory 95.4 0.03 6.4E-07 55.5 5.8 41 84-125 243-285 (500)
328 KOG0739 AAA+-type ATPase [Post 95.4 0.32 7E-06 44.8 11.8 81 58-151 128-213 (439)
329 PRK06645 DNA polymerase III su 95.4 0.078 1.7E-06 53.9 8.9 20 99-118 45-64 (507)
330 TIGR03499 FlhF flagellar biosy 95.3 0.077 1.7E-06 49.9 8.2 23 98-120 195-217 (282)
331 PRK08533 flagellar accessory p 95.3 0.14 3.1E-06 46.6 9.7 53 95-151 22-74 (230)
332 PRK14873 primosome assembly pr 95.3 0.15 3.2E-06 53.8 10.9 95 285-381 170-266 (665)
333 TIGR02525 plasmid_TraJ plasmid 95.3 0.047 1E-06 53.2 6.7 43 97-140 149-191 (372)
334 PRK00411 cdc6 cell division co 95.2 0.27 5.9E-06 48.9 12.3 36 98-134 56-91 (394)
335 TIGR00678 holB DNA polymerase 95.2 0.064 1.4E-06 47.2 6.9 39 203-242 94-132 (188)
336 COG1198 PriA Primosomal protei 95.2 0.087 1.9E-06 55.5 8.7 96 281-378 223-319 (730)
337 PRK10917 ATP-dependent DNA hel 95.2 0.18 3.9E-06 53.8 11.4 74 305-378 311-389 (681)
338 PRK08699 DNA polymerase III su 95.1 0.11 2.5E-06 49.8 8.9 35 83-117 2-41 (325)
339 PRK11823 DNA repair protein Ra 95.1 0.13 2.9E-06 51.7 9.7 52 96-151 79-130 (446)
340 COG0593 DnaA ATPase involved i 95.1 0.093 2E-06 51.3 8.2 48 205-252 175-224 (408)
341 KOG0733 Nuclear AAA ATPase (VC 95.1 0.22 4.8E-06 50.4 10.8 52 59-113 507-561 (802)
342 PRK13341 recombination factor 95.0 0.11 2.3E-06 55.4 9.2 40 205-249 109-148 (725)
343 PRK14954 DNA polymerase III su 95.0 0.07 1.5E-06 55.6 7.6 41 202-243 124-164 (620)
344 PRK13342 recombination factor 95.0 0.13 2.8E-06 51.5 9.3 19 98-116 37-55 (413)
345 PRK10867 signal recognition pa 95.0 0.53 1.1E-05 46.9 13.3 56 100-160 103-160 (433)
346 TIGR02524 dot_icm_DotB Dot/Icm 95.0 0.052 1.1E-06 52.8 6.1 43 96-139 133-176 (358)
347 PRK14963 DNA polymerase III su 95.0 0.091 2E-06 53.6 8.1 23 100-123 39-61 (504)
348 PRK14959 DNA polymerase III su 95.0 0.12 2.6E-06 53.6 8.9 20 99-118 40-59 (624)
349 PRK14955 DNA polymerase III su 94.9 0.21 4.5E-06 49.7 10.4 20 99-118 40-59 (397)
350 PRK12727 flagellar biosynthesi 94.9 0.11 2.4E-06 52.5 8.3 127 96-255 349-479 (559)
351 PF13173 AAA_14: AAA domain 94.9 0.2 4.3E-06 40.9 8.6 37 206-246 62-98 (128)
352 COG0470 HolB ATPase involved i 94.9 0.069 1.5E-06 51.5 6.9 39 204-243 108-146 (325)
353 PRK08939 primosomal protein Dn 94.9 0.16 3.4E-06 48.3 9.0 44 97-145 156-200 (306)
354 PTZ00112 origin recognition co 94.9 0.2 4.3E-06 53.5 10.3 22 100-122 784-805 (1164)
355 PRK14962 DNA polymerase III su 94.9 0.081 1.8E-06 53.5 7.4 18 100-117 39-56 (472)
356 TIGR00064 ftsY signal recognit 94.9 0.24 5.1E-06 46.3 10.0 41 98-141 73-115 (272)
357 PF05621 TniB: Bacterial TniB 94.9 0.12 2.7E-06 48.1 7.9 51 98-148 62-116 (302)
358 COG1474 CDC6 Cdc6-related prot 94.9 0.11 2.4E-06 50.6 8.0 26 98-124 43-68 (366)
359 PRK14948 DNA polymerase III su 94.8 0.15 3.3E-06 53.4 9.4 21 98-118 39-59 (620)
360 PF01695 IstB_IS21: IstB-like 94.8 0.057 1.2E-06 46.9 5.3 47 94-144 44-90 (178)
361 PRK12726 flagellar biosynthesi 94.8 0.11 2.5E-06 50.1 7.6 24 97-120 206-229 (407)
362 COG1435 Tdk Thymidine kinase [ 94.8 0.26 5.6E-06 42.7 9.0 104 98-232 5-108 (201)
363 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.2 4.3E-06 45.6 9.1 52 96-151 19-70 (229)
364 COG1110 Reverse gyrase [DNA re 94.7 0.17 3.6E-06 54.2 9.3 61 304-364 125-191 (1187)
365 TIGR00959 ffh signal recogniti 94.7 0.71 1.5E-05 46.0 13.3 58 99-161 101-160 (428)
366 PRK07940 DNA polymerase III su 94.7 0.16 3.5E-06 50.1 8.8 42 203-245 115-156 (394)
367 PRK13851 type IV secretion sys 94.7 0.039 8.5E-07 53.1 4.4 44 94-141 159-202 (344)
368 TIGR02928 orc1/cdc6 family rep 94.7 0.4 8.7E-06 47.1 11.7 24 98-122 41-64 (365)
369 PRK10416 signal recognition pa 94.6 0.29 6.3E-06 46.8 10.2 35 98-135 115-149 (318)
370 cd01121 Sms Sms (bacterial rad 94.6 0.24 5.1E-06 48.5 9.7 52 96-151 81-132 (372)
371 cd03115 SRP The signal recogni 94.6 1.2 2.5E-05 38.5 13.2 33 100-135 3-35 (173)
372 PRK14950 DNA polymerase III su 94.6 0.26 5.6E-06 51.6 10.5 19 99-117 40-58 (585)
373 PRK14957 DNA polymerase III su 94.6 0.23 5E-06 51.0 9.8 40 203-243 117-156 (546)
374 PRK05973 replicative DNA helic 94.5 0.089 1.9E-06 47.8 6.1 56 92-151 59-114 (237)
375 cd00984 DnaB_C DnaB helicase C 94.5 0.067 1.5E-06 49.2 5.5 39 95-135 11-49 (242)
376 PTZ00293 thymidine kinase; Pro 94.5 0.18 4E-06 44.6 7.8 39 97-138 4-42 (211)
377 TIGR02397 dnaX_nterm DNA polym 94.4 0.23 5E-06 48.6 9.4 24 99-123 38-61 (355)
378 PRK00440 rfc replication facto 94.4 0.46 9.9E-06 45.6 11.2 38 205-243 102-139 (319)
379 PRK05986 cob(I)alamin adenolsy 94.4 0.074 1.6E-06 46.2 5.0 144 96-255 21-167 (191)
380 PRK06067 flagellar accessory p 94.4 0.36 7.7E-06 44.1 9.9 52 96-151 24-75 (234)
381 TIGR00643 recG ATP-dependent D 94.3 0.27 5.9E-06 52.1 10.1 74 305-378 285-363 (630)
382 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.26 5.5E-06 41.7 7.9 52 204-255 94-147 (159)
383 PRK06620 hypothetical protein; 94.3 0.079 1.7E-06 47.6 5.2 18 98-115 45-62 (214)
384 TIGR03015 pepcterm_ATPase puta 94.3 0.66 1.4E-05 43.3 11.8 33 83-115 24-61 (269)
385 KOG2028 ATPase related to the 94.2 0.13 2.8E-06 48.6 6.5 49 98-149 163-211 (554)
386 PF05729 NACHT: NACHT domain 94.2 0.39 8.4E-06 40.8 9.3 43 99-142 2-47 (166)
387 PF03237 Terminase_6: Terminas 94.2 0.41 8.8E-06 47.0 10.6 116 101-231 1-123 (384)
388 COG2109 BtuR ATP:corrinoid ade 94.2 0.16 3.4E-06 43.6 6.3 142 100-256 31-175 (198)
389 PRK13900 type IV secretion sys 94.0 0.057 1.2E-06 51.9 4.0 44 94-141 157-200 (332)
390 TIGR00767 rho transcription te 94.0 0.43 9.3E-06 46.6 9.8 31 94-125 165-195 (415)
391 PRK11034 clpA ATP-dependent Cl 93.9 0.42 9.1E-06 51.3 10.4 20 97-116 207-226 (758)
392 PRK08058 DNA polymerase III su 93.8 0.28 6.1E-06 47.3 8.4 42 202-244 107-148 (329)
393 TIGR00708 cobA cob(I)alamin ad 93.8 0.11 2.3E-06 44.6 4.7 52 204-255 96-149 (173)
394 PRK06647 DNA polymerase III su 93.7 0.2 4.3E-06 51.9 7.5 18 99-116 40-57 (563)
395 COG1485 Predicted ATPase [Gene 93.5 0.76 1.6E-05 43.7 10.2 109 98-250 66-175 (367)
396 PF03266 NTPase_1: NTPase; In 93.5 0.03 6.6E-07 48.1 1.0 119 99-231 1-123 (168)
397 PRK14971 DNA polymerase III su 93.5 0.27 5.8E-06 51.6 8.0 41 202-243 118-158 (614)
398 TIGR00580 mfd transcription-re 93.5 0.6 1.3E-05 51.3 10.9 74 305-378 501-579 (926)
399 PRK04841 transcriptional regul 93.4 0.38 8.2E-06 53.6 9.7 41 207-247 123-163 (903)
400 PRK10436 hypothetical protein; 93.4 0.13 2.8E-06 51.8 5.3 40 84-124 203-244 (462)
401 cd01126 TraG_VirD4 The TraG/Tr 93.4 0.082 1.8E-06 52.3 4.0 48 99-151 1-48 (384)
402 PF01443 Viral_helicase1: Vira 93.4 0.099 2.2E-06 47.7 4.3 14 100-113 1-14 (234)
403 PF03796 DnaB_C: DnaB-like hel 93.4 0.3 6.6E-06 45.4 7.6 117 96-220 18-145 (259)
404 COG1219 ClpX ATP-dependent pro 93.4 0.056 1.2E-06 50.1 2.5 19 97-115 97-115 (408)
405 COG1200 RecG RecG-like helicas 93.3 0.49 1.1E-05 48.8 9.3 74 305-378 312-390 (677)
406 TIGR02639 ClpA ATP-dependent C 93.3 0.69 1.5E-05 49.9 11.1 19 98-116 204-222 (731)
407 PRK07399 DNA polymerase III su 93.2 0.68 1.5E-05 44.3 9.8 43 202-246 121-163 (314)
408 PRK06904 replicative DNA helic 93.2 0.85 1.8E-05 46.3 10.8 117 96-220 220-349 (472)
409 COG0552 FtsY Signal recognitio 93.1 3.8 8.2E-05 38.8 14.1 129 100-257 142-280 (340)
410 PF02534 T4SS-DNA_transf: Type 93.1 0.14 2.9E-06 52.4 5.2 50 98-152 45-94 (469)
411 PRK13764 ATPase; Provisional 93.1 0.2 4.3E-06 51.9 6.2 42 96-140 256-297 (602)
412 TIGR03600 phage_DnaB phage rep 93.1 0.64 1.4E-05 46.7 9.9 55 79-135 176-230 (421)
413 TIGR03878 thermo_KaiC_2 KaiC d 93.1 0.22 4.7E-06 46.3 6.0 37 96-135 35-71 (259)
414 PRK07133 DNA polymerase III su 92.9 0.42 9.2E-06 50.5 8.4 18 100-117 43-60 (725)
415 TIGR03819 heli_sec_ATPase heli 92.9 0.19 4.1E-06 48.5 5.5 64 71-140 153-217 (340)
416 TIGR01420 pilT_fam pilus retra 92.8 0.3 6.4E-06 47.5 6.8 42 97-140 122-163 (343)
417 PRK14970 DNA polymerase III su 92.8 0.84 1.8E-05 44.9 10.2 19 98-116 40-58 (367)
418 PRK13897 type IV secretion sys 92.8 0.18 3.9E-06 52.4 5.5 56 98-162 159-214 (606)
419 PRK04328 hypothetical protein; 92.7 0.18 3.8E-06 46.6 4.9 52 96-151 22-73 (249)
420 PHA00350 putative assembly pro 92.6 0.65 1.4E-05 45.5 8.7 25 100-124 4-29 (399)
421 TIGR02688 conserved hypothetic 92.6 0.62 1.4E-05 45.8 8.5 54 67-120 172-232 (449)
422 PHA00729 NTP-binding motif con 92.6 0.67 1.4E-05 41.6 8.1 17 99-115 19-35 (226)
423 PF00437 T2SE: Type II/IV secr 92.5 0.1 2.2E-06 48.9 3.1 43 95-140 125-167 (270)
424 cd01130 VirB11-like_ATPase Typ 92.5 0.22 4.8E-06 43.6 5.1 32 83-114 10-42 (186)
425 cd01129 PulE-GspE PulE/GspE Th 92.5 0.25 5.4E-06 45.9 5.5 59 75-139 59-119 (264)
426 KOG1513 Nuclear helicase MOP-3 92.4 0.12 2.5E-06 53.6 3.4 63 347-409 850-921 (1300)
427 PF12846 AAA_10: AAA-like doma 92.4 0.19 4E-06 47.8 4.8 43 97-142 1-43 (304)
428 COG1618 Predicted nucleotide k 92.3 0.12 2.6E-06 43.1 2.9 120 98-232 6-129 (179)
429 TIGR02533 type_II_gspE general 92.2 0.23 4.9E-06 50.5 5.4 39 84-123 227-267 (486)
430 KOG0701 dsRNA-specific nucleas 92.2 0.04 8.8E-07 62.2 -0.1 94 306-399 294-399 (1606)
431 PF06745 KaiC: KaiC; InterPro 92.1 0.15 3.3E-06 46.3 3.6 53 96-151 18-70 (226)
432 COG0466 Lon ATP-dependent Lon 92.1 0.54 1.2E-05 48.8 7.7 95 97-233 350-445 (782)
433 TIGR02538 type_IV_pilB type IV 92.0 0.24 5.2E-06 51.5 5.3 45 75-123 295-341 (564)
434 KOG0331 ATP-dependent RNA heli 91.9 1.1 2.4E-05 45.2 9.5 55 127-185 340-398 (519)
435 PRK08506 replicative DNA helic 91.8 1.1 2.4E-05 45.6 9.7 51 96-150 191-241 (472)
436 PRK10689 transcription-repair 91.8 1.3 2.8E-05 50.0 11.0 75 304-378 649-728 (1147)
437 PRK06305 DNA polymerase III su 91.7 0.72 1.6E-05 46.6 8.2 21 98-118 40-60 (451)
438 COG0630 VirB11 Type IV secreto 91.7 0.36 7.7E-06 46.1 5.7 57 80-140 125-182 (312)
439 TIGR01243 CDC48 AAA family ATP 91.7 1.2 2.6E-05 48.3 10.3 52 59-113 174-228 (733)
440 PRK14953 DNA polymerase III su 91.5 0.73 1.6E-05 46.9 8.1 18 100-117 41-58 (486)
441 PRK08840 replicative DNA helic 91.5 1.7 3.7E-05 44.0 10.6 69 79-150 199-267 (464)
442 PHA03372 DNA packaging termina 91.5 1.2 2.6E-05 45.5 9.3 132 98-247 203-338 (668)
443 PF02572 CobA_CobO_BtuR: ATP:c 91.4 0.68 1.5E-05 39.7 6.5 140 100-254 6-147 (172)
444 KOG0740 AAA+-type ATPase [Post 91.3 0.44 9.5E-06 46.8 6.0 50 205-254 245-307 (428)
445 TIGR00416 sms DNA repair prote 91.3 0.94 2E-05 45.7 8.6 52 96-151 93-144 (454)
446 COG5008 PilU Tfp pilus assembl 91.3 0.38 8.3E-06 43.6 5.0 15 100-114 130-144 (375)
447 TIGR03346 chaperone_ClpB ATP-d 91.3 1.4 3E-05 48.5 10.5 19 98-116 195-213 (852)
448 PRK09376 rho transcription ter 91.3 0.72 1.6E-05 44.9 7.2 30 94-124 166-195 (416)
449 TIGR01243 CDC48 AAA family ATP 91.2 0.76 1.7E-05 49.7 8.4 54 59-115 449-505 (733)
450 KOG0058 Peptide exporter, ABC 91.2 1.5 3.3E-05 45.7 9.8 42 203-245 620-661 (716)
451 TIGR00635 ruvB Holliday juncti 91.2 0.33 7.1E-06 46.4 5.0 18 98-115 31-48 (305)
452 COG2812 DnaX DNA polymerase II 91.0 0.36 7.8E-06 48.9 5.1 24 200-223 114-137 (515)
453 CHL00176 ftsH cell division pr 91.0 0.85 1.8E-05 48.0 8.1 18 98-115 217-234 (638)
454 COG2255 RuvB Holliday junction 91.0 0.37 8E-06 44.2 4.7 18 98-115 53-70 (332)
455 PF10412 TrwB_AAD_bind: Type I 91.0 0.33 7.2E-06 48.0 4.9 49 92-143 10-58 (386)
456 TIGR00763 lon ATP-dependent pr 90.9 1.2 2.6E-05 48.5 9.5 19 97-115 347-365 (775)
457 PRK08006 replicative DNA helic 90.9 2.3 4.9E-05 43.2 10.9 115 96-218 223-349 (471)
458 KOG0744 AAA+-type ATPase [Post 90.9 0.62 1.3E-05 43.6 6.1 67 97-164 177-257 (423)
459 PRK13850 type IV secretion sys 90.9 0.38 8.3E-06 50.7 5.4 49 98-151 140-188 (670)
460 COG0467 RAD55 RecA-superfamily 90.9 0.38 8.3E-06 44.7 5.0 53 96-152 22-74 (260)
461 KOG2036 Predicted P-loop ATPas 90.8 4.5 9.8E-05 41.9 12.5 141 84-248 255-413 (1011)
462 PRK04537 ATP-dependent RNA hel 90.8 1.7 3.8E-05 45.4 10.2 74 127-213 256-333 (572)
463 cd01393 recA_like RecA is a b 90.8 0.44 9.6E-06 43.2 5.2 41 97-137 19-62 (226)
464 cd01131 PilT Pilus retraction 90.8 0.37 8E-06 42.7 4.6 38 100-139 4-41 (198)
465 PRK10865 protein disaggregatio 90.7 1.9 4E-05 47.5 10.7 19 98-116 200-218 (857)
466 TIGR02640 gas_vesic_GvpN gas v 90.7 0.38 8.2E-06 44.8 4.8 28 89-116 13-40 (262)
467 PRK07004 replicative DNA helic 90.7 1.5 3.2E-05 44.5 9.2 40 94-135 210-249 (460)
468 PRK14701 reverse gyrase; Provi 90.7 1.7 3.6E-05 50.8 10.6 59 305-363 123-187 (1638)
469 PRK09087 hypothetical protein; 90.6 0.59 1.3E-05 42.4 5.8 17 98-114 45-61 (226)
470 PRK09435 membrane ATPase/prote 90.5 8 0.00017 37.2 13.6 14 100-113 59-72 (332)
471 TIGR02788 VirB11 P-type DNA tr 90.5 0.24 5.3E-06 47.3 3.4 20 94-113 141-160 (308)
472 TIGR03743 SXT_TraD conjugative 90.4 0.58 1.3E-05 49.2 6.3 53 97-152 176-230 (634)
473 CHL00095 clpC Clp protease ATP 90.3 1.5 3.2E-05 48.1 9.5 21 98-118 201-221 (821)
474 TIGR02237 recomb_radB DNA repa 90.3 0.37 8.1E-06 43.1 4.2 39 96-137 11-49 (209)
475 TIGR02655 circ_KaiC circadian 90.3 0.4 8.7E-06 49.0 4.9 52 97-152 263-314 (484)
476 KOG0333 U5 snRNP-like RNA heli 90.2 1.6 3.5E-05 43.5 8.5 86 128-234 517-606 (673)
477 TIGR03880 KaiC_arch_3 KaiC dom 90.2 0.54 1.2E-05 42.6 5.3 52 96-151 15-66 (224)
478 PRK05748 replicative DNA helic 90.1 1.8 3.9E-05 43.8 9.5 52 95-149 201-252 (448)
479 PF01580 FtsK_SpoIIIE: FtsK/Sp 90.1 0.48 1E-05 42.2 4.8 28 96-123 37-64 (205)
480 COG0210 UvrD Superfamily I DNA 90.1 0.84 1.8E-05 48.8 7.4 70 82-153 2-72 (655)
481 PF06733 DEAD_2: DEAD_2; Inte 90.0 0.16 3.5E-06 44.0 1.6 47 173-220 114-160 (174)
482 PRK13695 putative NTPase; Prov 89.9 2 4.4E-05 37.0 8.4 24 99-123 2-25 (174)
483 cd01128 rho_factor Transcripti 89.9 0.68 1.5E-05 42.6 5.6 29 94-123 13-41 (249)
484 TIGR00665 DnaB replicative DNA 89.8 1.4 3.1E-05 44.4 8.4 53 96-151 194-246 (434)
485 PF10593 Z1: Z1 domain; Inter 89.8 0.56 1.2E-05 42.8 4.9 88 328-421 110-203 (239)
486 cd01127 TrwB Bacterial conjuga 89.8 0.32 6.8E-06 48.6 3.6 50 91-143 36-85 (410)
487 PHA00012 I assembly protein 89.8 8.1 0.00018 36.7 12.4 25 100-124 4-28 (361)
488 cd03239 ABC_SMC_head The struc 89.8 0.25 5.5E-06 42.9 2.6 41 204-244 115-156 (178)
489 COG1074 RecB ATP-dependent exo 89.7 0.59 1.3E-05 53.0 6.1 56 96-151 15-72 (1139)
490 PF02456 Adeno_IVa2: Adenoviru 89.7 0.35 7.5E-06 44.9 3.5 40 100-140 90-129 (369)
491 PF04665 Pox_A32: Poxvirus A32 89.7 0.46 1E-05 43.1 4.3 35 99-136 15-49 (241)
492 cd00268 DEADc DEAD-box helicas 89.7 2.2 4.7E-05 37.8 8.7 85 292-380 54-151 (203)
493 COG1197 Mfd Transcription-repa 89.6 2.2 4.7E-05 47.1 9.8 74 305-378 644-722 (1139)
494 TIGR02784 addA_alphas double-s 89.5 0.8 1.7E-05 52.2 6.9 56 97-152 10-65 (1141)
495 TIGR02858 spore_III_AA stage I 89.4 2.4 5.3E-05 39.4 9.0 16 98-113 112-127 (270)
496 PF13555 AAA_29: P-loop contai 89.4 0.27 5.8E-06 34.1 1.9 18 97-114 23-40 (62)
497 TIGR03345 VI_ClpV1 type VI sec 89.3 2.5 5.3E-05 46.4 10.2 30 87-116 192-227 (852)
498 PRK05564 DNA polymerase III su 89.2 2.2 4.8E-05 40.9 8.8 40 203-243 91-130 (313)
499 PF13481 AAA_25: AAA domain; P 89.2 0.92 2E-05 39.8 5.8 63 90-153 24-94 (193)
500 TIGR01054 rgy reverse gyrase. 89.2 1.4 3E-05 50.0 8.3 60 304-363 121-187 (1171)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-79 Score=550.88 Aligned_cols=398 Identities=50% Similarity=0.815 Sum_probs=378.2
Q ss_pred CCCCCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEE
Q 011100 53 STTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLAL 132 (493)
Q Consensus 53 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~l 132 (493)
....++..+|.++++.+.+.+++...|+..||++|.++||.++.|+|+|..|.||||||.+|++|+++++.+++..+.++
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~l 133 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFAL 133 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEE
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeec
Q 011100 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLD 212 (493)
Q Consensus 133 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViD 212 (493)
|++|||+||.|+.+.|..++...|+++.++.||.+...+...+...++|+|+|||+|++++.+.+. ..+..++++|+|
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlD 211 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLD 211 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999996654 457899999999
Q ss_pred cccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHH
Q 011100 213 EADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292 (493)
Q Consensus 213 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (493)
|||++++++|...+..|+..+|..+|+++||||++..+.++....+..+..+.+...+.+++.+.|.|.+++..++..+|
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCC
Q 011100 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372 (493)
Q Consensus 293 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 372 (493)
.+++++... .++||||+++.+++.++-.|+.+|+.+..+||.|++..|...++.|++|.+.||+|||+++||+|+|.
T Consensus 292 V~ll~e~~g---~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~ 368 (476)
T KOG0330|consen 292 VYLLNELAG---NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPH 368 (476)
T ss_pred HHHHHhhcC---CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCC
Confidence 999986544 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHHHH
Q 011100 373 VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVAT 452 (493)
Q Consensus 373 v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (493)
|++|||||+|.+..+|+||+||+||+|+.|.+|.|++..|.+.+..|+..+++.+.+++++.+.+.....++..+.+.+.
T Consensus 369 Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~erv~eA~~~a~ 448 (476)
T KOG0330|consen 369 VDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNERVAEAQKEAG 448 (476)
T ss_pred ceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888887777777766665
Q ss_pred Hhh
Q 011100 453 MKL 455 (493)
Q Consensus 453 ~~~ 455 (493)
+.+
T Consensus 449 m~~ 451 (476)
T KOG0330|consen 449 MEM 451 (476)
T ss_pred cch
Confidence 443
No 2
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-78 Score=541.95 Aligned_cols=428 Identities=54% Similarity=0.835 Sum_probs=400.8
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
+...|+.|||++|+.+.|+.+|+..|||+|..|||.|++|+|+|-+|.||||||.+|.+|+++.|..++.+..++|++||
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCC-CCCCccCCcceEeeccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDP-DIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~l~~~~~vViDEah~ 216 (493)
|+|+.|+.+.|..+++.+++++.+++||.+...+...+..++|++|+|||++.+++.+.. .....+++++++|+||||+
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 999999999999999999999999999999999999999999999999999999998763 3345678999999999999
Q ss_pred cccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCC--ceEEeccccccccccceEEEEEecCCcchHHHHH
Q 011100 217 VLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANK--AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294 (493)
Q Consensus 217 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (493)
+++..|...++.+...+|..+|.++||||+++.+..+.....+. .+.+...++...++.+.+.|+.++...++.++.+
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 99999999999999999999999999999999998888877765 5667777788889999999999999999999999
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++......+.+.++||++++.+|+.++..|+.+++.+..+||.|++.+|...+.+|+++..+||||||+++||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 99999887778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHHHHHh
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMK 454 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (493)
.|||||.|.++.+|+||+||++|+|+.|.++++++..|...+..|++..+++++++......+...++++..+++.+.++
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~akrea~m~ 404 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVAKREAEMK 404 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhhheehhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011100 455 LMDDGFEEKAKERKKQKLKMLAEKGSLKKRSE 486 (493)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
+.+++|++... +++++.++.+...+.++...
T Consensus 405 m~~~~F~er~q-~R~~k~~m~~~~~~l~~~~~ 435 (442)
T KOG0340|consen 405 MDNNGFGERAQ-KRRKKRKMEGGDSQLKALGR 435 (442)
T ss_pred hhhcchhHHHH-HHHHHHhhcCChHHHHHHHH
Confidence 99999999977 66666666665554444333
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-72 Score=541.77 Aligned_cols=369 Identities=40% Similarity=0.601 Sum_probs=341.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc------CCCCeEEE
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE------DPYGVLAL 132 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~------~~~~~~~l 132 (493)
...|+.++|++++..+++..||..|||+|.+.||.+++|+|++..|.||||||++|++|++.++.. .+.++.+|
T Consensus 90 ~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred chhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 348999999999999999999999999999999999999999999999999999999999999886 34578999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeec
Q 011100 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLD 212 (493)
Q Consensus 133 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViD 212 (493)
||+|||+||.|+.+.+..++..+++++.+++||.....|...+..+.+|+|+|||+|.++++.+ ...++++.++|+|
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g---~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG---SLNLSRVTYLVLD 246 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC---CccccceeEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999988 5678999999999
Q ss_pred cccccccCCCHHHHHHHHHhC-CcCCceeeeeecccchHHHHHHHhcCCceEEecccc--ccccccceEEEEEecCCcch
Q 011100 213 EADRVLDVGFEEELRVVFQCL-PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG--FKTVETLKQQYIFIPKNVKD 289 (493)
Q Consensus 213 Eah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 289 (493)
|||+|+++||..+++.|+..+ ++.+|++++|||+|..+..+...+++.+..+.+... ......+.+....++...+.
T Consensus 247 EADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~ 326 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKL 326 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHH
Confidence 999999999999999999999 566689999999999999999999988777766543 24556777888888888888
Q ss_pred HHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCC
Q 011100 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369 (493)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 369 (493)
..+..++........+++||||++++.|+.++..|+..++++..+||+.++.+|..+++.|++|++.||||||+++||+|
T Consensus 327 ~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 327 RKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLD 406 (519)
T ss_pred HHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCC
Confidence 88999998887555679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccccc
Q 011100 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430 (493)
Q Consensus 370 i~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (493)
+|+|++|||||+|.++++|+||+||+||+|+.|.+++|++..+......+.+.+.+.....
T Consensus 407 i~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v 467 (519)
T KOG0331|consen 407 VPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTV 467 (519)
T ss_pred CccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999998888888775544443
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-69 Score=504.97 Aligned_cols=359 Identities=43% Similarity=0.632 Sum_probs=336.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC---CeEEEEEc
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY---GVLALVIT 135 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~---~~~~lil~ 135 (493)
..+|.+++|+..+++++..+||..|||+|..+||..+-|+|++.+|.||||||.+|++|++.++.-.+. ..++||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 458999999999999999999999999999999999999999999999999999999999999986553 57899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 136 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
|||+|+.|++...++++....+.+++..||.+...+...+...|||+|+|||+|.+++.+.+. ..++++.++|+||||
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s--f~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS--FNLDSIEVLVLDEAD 337 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC--ccccceeEEEechHH
Confidence 999999999999999999999999999999999999999999999999999999999998874 468899999999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC---CcchHHH
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK---NVKDVYL 292 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l 292 (493)
+|++.+|...+..|++.+++++|+++||||++..+..+..+.+++|+.+-+.+.......+.+.|+.+.. ..+...+
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999888888888899998887763 3456677
Q ss_pred HHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCC
Q 011100 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372 (493)
Q Consensus 293 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 372 (493)
..++..... .++|||+.+.+.|..+.-.|--+|+.+.-+||.+++.+|...++.|++++++||||||+++||+||++
T Consensus 418 ~~l~~rtf~---~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 418 ASLITRTFQ---DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHhcc---cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 777776553 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHH
Q 011100 373 VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAV 422 (493)
Q Consensus 373 v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 422 (493)
|.+||||++|.+.+.|+||+||++|+|+.|.+++|+...|...+..+...
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988887665
No 5
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-69 Score=469.55 Aligned_cols=375 Identities=33% Similarity=0.543 Sum_probs=351.3
Q ss_pred CCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
.....+|+++||.++++++++..||..|+.+|+.|++.|++|+|+++++..|+|||.+|.+.+++.+.-..+..++||+.
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lils 102 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILS 102 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEec
Confidence 34466899999999999999999999999999999999999999999999999999999999999888777678999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 136 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
|||+|+.|+.+.+..++..+++.|..+.||.+..+....+..+.+++.+|||++.+++..+ ......++++|+||||
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~---~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR---SLRTRAVKMLVLDEAD 179 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc---cccccceeEEEeccHH
Confidence 9999999999999999999999999999999998888888889999999999999999887 4456788999999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC-CcchHHHHH
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK-NVKDVYLMH 294 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 294 (493)
.|++.+|..++-.+++.+|++.|++++|||+|.++......+..++..+-+..+..+.+.++++|+.+.. +++...|..
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcd 259 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 259 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHH
Confidence 9999999999999999999999999999999999999999999999988888888888889999998875 458888887
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
+...+. ..+++|||||+..++.+.+.+++..+.+..+||+|++++|..++..|+.|+.+|||+||+.+||+|+|.|+
T Consensus 260 LYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 260 LYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred Hhhhhe---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 776554 36899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHH
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (493)
+|||||+|.+.+.|+|||||.||.|++|.++.|+..+|...++.+++.++.++.+++.+..+
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999998877544
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-67 Score=529.90 Aligned_cols=363 Identities=44% Similarity=0.661 Sum_probs=334.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc--CCCCeEEEEEccc
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE--DPYGVLALVITPT 137 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~--~~~~~~~lil~Pt 137 (493)
..|+++++++++++++.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999874 2222229999999
Q ss_pred HHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc
Q 011100 138 RELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~ 216 (493)
|+||.|+++.+..++... ++++..++||.+...+...+..+++|+|+|||++.+++... ...++.+.++|+||||+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEeccHhh
Confidence 999999999999999988 79999999999999999888878999999999999999987 56789999999999999
Q ss_pred cccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEecccccc--ccccceEEEEEecCCc-chHHHH
Q 011100 217 VLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK--TVETLKQQYIFIPKNV-KDVYLM 293 (493)
Q Consensus 217 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~ 293 (493)
|+++||...+..|+..++.++|+++||||++..+..+.+.++..+..+.+..... ....+.+.++.+.... +...+.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888777664444 7788999999988765 777777
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTV 373 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 373 (493)
.++.... ..++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+||||||+++||||+|++
T Consensus 266 ~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 266 KLLKDED---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 7775443 3479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCCcceeeccccccCCCCccEEEEEecc-cHHHHHHHHHHhcCccc
Q 011100 374 DLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN-DVDLIHEIEAVVGKQLE 428 (493)
Q Consensus 374 ~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 428 (493)
++|||||+|.+++.|+||+||+||+|..|.+++|+.+. |...+..+++.++..+.
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999986 89999999998876654
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-65 Score=512.14 Aligned_cols=378 Identities=32% Similarity=0.478 Sum_probs=331.5
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-------CCeE
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-------YGVL 130 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~-------~~~~ 130 (493)
...+|++++|+++++++|..+||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+...+ .+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 446799999999999999999999999999999999999999999999999999999999999886432 2478
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEe
Q 011100 131 ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLV 210 (493)
Q Consensus 131 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vV 210 (493)
+|||+||++||.|+++.+..+....++++..++||.....+...+..+++|+|+||+++.+++... ...++++++||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lV 162 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVV 162 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEE
Confidence 999999999999999999999999999999999999887777777788999999999999998765 45688999999
Q ss_pred eccccccccCCCHHHHHHHHHhCCc--CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcc
Q 011100 211 LDEADRVLDVGFEEELRVVFQCLPK--NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288 (493)
Q Consensus 211 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (493)
|||||++++++|...+..++..++. ..+.+++|||++..+..+.....+.+..+.+.........+.+.+.......+
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 9999999999999999999999874 56789999999999888887777777666655444444556665555444444
Q ss_pred hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCC
Q 011100 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368 (493)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 368 (493)
...+..++.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 243 ~~~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 243 MRLLQTLIEE---EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 4455555433 3347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHHHHHHH
Q 011100 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDI 441 (493)
Q Consensus 369 di~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (493)
|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+.+++...+..+++.++..++....+..+++..+
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 392 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDALLTDL 392 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999988888877666666666433
No 8
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-67 Score=464.92 Aligned_cols=373 Identities=32% Similarity=0.523 Sum_probs=352.8
Q ss_pred CCCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 55 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 55 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
+......|+++.|..+++..+.+.||+.|+|+|+++||..+.|+|+++.|..|+|||.+|.+|+++.+.......+++|+
T Consensus 80 t~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~il 159 (459)
T KOG0326|consen 80 TATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIIL 159 (459)
T ss_pred ccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccc
Q 011100 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEa 214 (493)
+|||+||.|+.+.+.++++.+++.+...+||++..+..-.+....+++|+|||+++++..++ ...++++..+|+|||
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg---Va~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG---VADLSDCVILVMDEA 236 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc---cccchhceEEEechh
Confidence 99999999999999999999999999999999998888888889999999999999999887 566899999999999
Q ss_pred cccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHH
Q 011100 215 DRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294 (493)
Q Consensus 215 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (493)
|.+++..|...++.++..+|+.+|++++|||+|-.+..+....+.+|+.++.... .++..+.++|.++.+..+...+..
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999987765 566788999999999999999998
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++.++.- .+.|||||+...++.+|..+.++|+.+.++|+.|.++.|..++..|++|.++.|||||.+.||||+++++
T Consensus 316 LfskLqI---NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavN 392 (459)
T KOG0326|consen 316 LFSKLQI---NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVN 392 (459)
T ss_pred HHHHhcc---cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceee
Confidence 8887764 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccch
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (493)
+|||||+|+++++|+||+||+||.|..|.++.+++-+|...+..+++.++..+..++...
T Consensus 393 vVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 393 VVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred EEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 999999999999999999999999999999999999999999999999999988776543
No 9
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.5e-66 Score=478.81 Aligned_cols=369 Identities=39% Similarity=0.607 Sum_probs=335.3
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC----CCCeEEEE
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED----PYGVLALV 133 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~----~~~~~~li 133 (493)
....|+.+.|++...++++.+||.++|++|...++.++.|+|+++.|.||||||++|++|+++.+... +.+..++|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999988653 24677999
Q ss_pred EcccHHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeec
Q 011100 134 ITPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLD 212 (493)
Q Consensus 134 l~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViD 212 (493)
|||||+||.|++.+++++.... ++.+..+.||.+.......+..+++|+|+|||+|.+++++...+ .+.+++++|+|
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f--~~r~~k~lvlD 237 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGF--LFRNLKCLVLD 237 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcc--hhhccceeEee
Confidence 9999999999999999998887 89999999999999888888889999999999999999988653 35677899999
Q ss_pred cccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCC-ceEEecccc--ccccccceEEEEEecCCcch
Q 011100 213 EADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANK-AYFYEAYEG--FKTVETLKQQYIFIPKNVKD 289 (493)
Q Consensus 213 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 289 (493)
|||++++.||...++.|+..+|..+|.++||||.+..++.+....+.. +.++..... ..+.+.+.|.|+..+...+.
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999999999999999999999999888766 555555443 34567889999999988887
Q ss_pred HHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCC
Q 011100 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369 (493)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 369 (493)
..+..++++.... .++||||+|+..+..++..|+...++|..+||+.++..|..+...|++.+..||||||+++||+|
T Consensus 318 ~ll~~~LKk~~~~--~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 318 SLLYTFLKKNIKR--YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred HHHHHHHHHhcCC--ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 8888888765543 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccc
Q 011100 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK 433 (493)
Q Consensus 370 i~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (493)
+|+|++||+||+|.++++|+||+||+||.|..|.+++++.+.+..+++++++ ..+++++..
T Consensus 396 ~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~---lpl~~~e~~ 456 (543)
T KOG0342|consen 396 IPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK---LPLEEFEFP 456 (543)
T ss_pred CCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh---CCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999984 455555443
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.6e-66 Score=480.95 Aligned_cols=365 Identities=36% Similarity=0.567 Sum_probs=337.9
Q ss_pred CCCCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-------
Q 011100 54 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP------- 126 (493)
Q Consensus 54 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~------- 126 (493)
..+.+..+|++.++|.++++.+...||..|+|+|.++||..++.+|+|..+.||||||++|++|++..+..-+
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 3455678899999999999999999999999999999999999999999999999999999999997765433
Q ss_pred --CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccC
Q 011100 127 --YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS 204 (493)
Q Consensus 127 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~ 204 (493)
.++.++|++|||+|++|+.++-.+++..+|++++.+.||.+..++.-.+..+++|+|+||++|.+.+.+. ...++
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr---~lvl~ 395 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR---YLVLN 395 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH---HHHhc
Confidence 3788999999999999999999999999999999999999998887788899999999999999999877 56789
Q ss_pred CcceEeeccccccccCCCHHHHHHHHHhCCc-------------------------CCceeeeeecccchHHHHHHHhcC
Q 011100 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPK-------------------------NRQTLLFSATMTSDLQTLLELSAN 259 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~~~~~~ 259 (493)
++.+||+||||+|.++||.+.+..++..+|. .+|++.||||+|+.++.++..++.
T Consensus 396 qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr 475 (673)
T KOG0333|consen 396 QCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR 475 (673)
T ss_pred cCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh
Confidence 9999999999999999999999999998873 168999999999999999999999
Q ss_pred CceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCC
Q 011100 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339 (493)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 339 (493)
.+............+.+.|.+..+..+.+...|..++... ...++|||+|+++.|+.+|+.|.+.|+.+..|||+-+
T Consensus 476 ~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~ 552 (673)
T KOG0333|consen 476 RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKS 552 (673)
T ss_pred CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCcc
Confidence 9999988888888889999999999888888888777654 3378999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHH
Q 011100 340 QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 340 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 419 (493)
+++|+.+++.|++|...||||||+++||||+|+|.+|||||+++++++|+|||||+||+|+.|.+++|+++.|-..+..|
T Consensus 553 qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 553 QEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred HHHhc
Q 011100 420 EAVVG 424 (493)
Q Consensus 420 ~~~~~ 424 (493)
.+.+.
T Consensus 633 kq~l~ 637 (673)
T KOG0333|consen 633 KQALR 637 (673)
T ss_pred HHHHH
Confidence 66543
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-65 Score=468.66 Aligned_cols=367 Identities=37% Similarity=0.591 Sum_probs=323.9
Q ss_pred cccccCC--CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC----CC-CeEEE
Q 011100 60 VTFAGLG--LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED----PY-GVLAL 132 (493)
Q Consensus 60 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~----~~-~~~~l 132 (493)
..|++++ |++|+++++...||...||+|..+||.++.++|+++.++||||||++|++|++..+..+ ++ ...+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 55999999999999999999999999999999999999999999999999999998432 11 24689
Q ss_pred EEcccHHHHHHHHHHHHHhccC-CCceEEEEEcCCCHHHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccCCcceEe
Q 011100 133 VITPTRELAYQLAEQFKALGSG-LHLRCEVVVGGMDLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLV 210 (493)
Q Consensus 133 il~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vV 210 (493)
||+|||+|+.|+.+.+..+... .++++.+++||....+....+. .+++|+|||||+|.+++.+... ...+.++.++|
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~LV 162 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEILV 162 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceEE
Confidence 9999999999999999988776 5889999999998887777664 5688999999999999988543 23366999999
Q ss_pred eccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEecccccc--ccccceEEEEEecCCcc
Q 011100 211 LDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK--TVETLKQQYIFIPKNVK 288 (493)
Q Consensus 211 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 288 (493)
+||||+++++||...++.|+..+|+++++-+||||....+..+....+..+..+.+..... ++..+...|..+....+
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999998887766655 77889999999999989
Q ss_pred hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCC
Q 011100 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366 (493)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 366 (493)
...+.+++.. ...+++|||++|+..++.....+... ...+..+||.|.+..|..+++.|++..-.+|+|||+++|
T Consensus 243 ~~~lv~~L~~---~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaAR 319 (567)
T KOG0345|consen 243 LSQLVHLLNN---NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAAR 319 (567)
T ss_pred HHHHHHHHhc---cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhc
Confidence 9988888875 33478999999999999999988876 568899999999999999999999988899999999999
Q ss_pred CCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccccc
Q 011100 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430 (493)
Q Consensus 367 Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (493)
|||+|++++||+||+|.++..|.||+||+||+|+.|.+++|+.+.+..++.-+.-.-...+++.
T Consensus 320 GlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 320 GLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred cCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 9999999999999999999999999999999999999999999988777665543323344443
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.1e-64 Score=513.08 Aligned_cols=371 Identities=34% Similarity=0.541 Sum_probs=328.0
Q ss_pred CCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-----CCCeE
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-----PYGVL 130 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-----~~~~~ 130 (493)
+.+..+|++++++++++++|+.+||.+||++|.++||.+++|+|+|++||||||||++|++|++..+... ..++.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~ 205 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPI 205 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcE
Confidence 3456789999999999999999999999999999999999999999999999999999999999887643 23678
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEe
Q 011100 131 ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLV 210 (493)
Q Consensus 131 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vV 210 (493)
+|||+||++||.|+.+.+..++...++++.+++|+.....+...+..+++|+|+||++|.+++... ...+.++++||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lV 282 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLV 282 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEE
Confidence 999999999999999999999988899999999999988888888888999999999999999876 45688999999
Q ss_pred eccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcC-CceEEecccc-ccccccceEEEEEecCCcc
Q 011100 211 LDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSAN-KAYFYEAYEG-FKTVETLKQQYIFIPKNVK 288 (493)
Q Consensus 211 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 288 (493)
|||||++++++|...+..++..+++.+|++++|||++..+..+...... .+..+.+... ......+.+.+..+....+
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k 362 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEK 362 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhH
Confidence 9999999999999999999999999999999999999998888776654 3444433221 2234556677777777677
Q ss_pred hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCC
Q 011100 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368 (493)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 368 (493)
...+..++..+... ..++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++||
T Consensus 363 ~~~L~~ll~~~~~~-~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 363 RGKLKMLLQRIMRD-GDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHhccc-CCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 77777777766543 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccccc
Q 011100 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430 (493)
Q Consensus 369 di~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (493)
|+|++++||+||+|.++++|+||+||+||.|..|.|++|+++++......+.+.+......+
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~v 503 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPV 503 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999988888888776554443
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.1e-63 Score=503.56 Aligned_cols=365 Identities=35% Similarity=0.532 Sum_probs=328.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.+|++++|++.+.++|..+||..|+|+|.+|++.+++|+|++++||||||||++|++|+++.+.......++||++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999999877655678999999999
Q ss_pred HHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 140 LAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
|+.|+.+.+..++... ++++..++||.+...+...+..+++|+|+||+++.+++... ...++++++||+||||+++
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~---~~~l~~l~~lViDEad~~l 160 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG---TLDLDALNTLVLDEADRML 160 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC---CccHHHCCEEEEECHHHHh
Confidence 9999999999987654 78999999999988888888889999999999999998875 4557899999999999999
Q ss_pred cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHh
Q 011100 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (493)
+++|...+..++..++...|+++||||+++.+..+...+...+..+...... ....+.+.++.++...+...+..++..
T Consensus 161 ~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~ 239 (460)
T PRK11776 161 DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLH 239 (460)
T ss_pred CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888777766554433 344577777777766666666666643
Q ss_pred hhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE
Q 011100 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378 (493)
Q Consensus 299 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~ 378 (493)
. ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 240 ~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~ 316 (460)
T PRK11776 240 H---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN 316 (460)
T ss_pred c---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE
Confidence 2 3368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccc
Q 011100 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431 (493)
Q Consensus 379 ~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (493)
||+|.++..|+||+||+||.|..|.|++|+.++|...+..+++.++..++...
T Consensus 317 ~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~ 369 (460)
T PRK11776 317 YELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEP 369 (460)
T ss_pred ecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999999999999999999999999999998887665543
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-63 Score=510.59 Aligned_cols=374 Identities=37% Similarity=0.565 Sum_probs=335.7
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
...+|++++|++.++++|.++||.+|+|+|.++|+.+++++|+|++||||||||++|++|+++.+......+++|||+||
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PT 83 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPT 83 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCc
Confidence 34569999999999999999999999999999999999999999999999999999999999988766556789999999
Q ss_pred HHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc
Q 011100 138 RELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~ 216 (493)
++||.|+++.+..+...+ ++.+..++||.+...+...+...++|+|+||+++.+++... ...++++++|||||||+
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~---~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG---TLDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcchhhceEEEeccHHH
Confidence 999999999999887655 78999999999988888888888999999999999998765 45688999999999999
Q ss_pred cccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHH
Q 011100 217 VLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296 (493)
Q Consensus 217 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (493)
|++++|...+..++..++...|+++||||+|..+..+...+...+..+.+.........+.+.|..+....+...+..++
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L 240 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHH
Confidence 99999999999999999999999999999999999988888887776665555555566777777776666666666655
Q ss_pred HhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeE
Q 011100 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376 (493)
Q Consensus 297 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V 376 (493)
.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 241 ~~---~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 241 EA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred Hh---cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 43 334689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHHH
Q 011100 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437 (493)
Q Consensus 377 i~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (493)
|+||+|.+++.|+||+||+||+|+.|.+++|+.+.+...+..+++.++..+++...+..+.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~ 378 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL 378 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHH
Confidence 9999999999999999999999999999999999999999999999998887776555443
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.4e-64 Score=501.54 Aligned_cols=365 Identities=38% Similarity=0.601 Sum_probs=324.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC------CCeEEEEE
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP------YGVLALVI 134 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~------~~~~~lil 134 (493)
+|++++|++++.++|.++||..||++|.++|+.+++++|+++++|||||||++|++|+++.+.... ...++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999986532 23579999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccc
Q 011100 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEa 214 (493)
+||++||.|+.+.+..+....++.+..++|+.....+...+...++|+|+||++|.+++... ...++++++||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lViDEa 158 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN---AVKLDQVEILVLDEA 158 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---CcccccceEEEeecH
Confidence 99999999999999999988899999999999988887777888999999999999988765 345789999999999
Q ss_pred cccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHH
Q 011100 215 DRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294 (493)
Q Consensus 215 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (493)
|++++++|...+..++..++...|+++||||+++.+..+.......+..+.+.........+.+.+..+....+...+..
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888777777666554444445556666666655544444444
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++. .....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 239 l~~---~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~ 315 (456)
T PRK10590 239 MIG---KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP 315 (456)
T ss_pred HHH---cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCC
Confidence 443 23346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccc
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (493)
+||+|++|.++.+|+||+||+||.|..|.+++|+..+|...+..+++.++..++...
T Consensus 316 ~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~ 372 (456)
T PRK10590 316 HVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIA 372 (456)
T ss_pred EEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999999999999999999999999999887775443
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-63 Score=505.90 Aligned_cols=369 Identities=36% Similarity=0.500 Sum_probs=322.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-------CCeEEE
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-------YGVLAL 132 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~-------~~~~~l 132 (493)
.+|++++|+++++++|.++||..|||+|.++||.+++|+|+++++|||||||++|++|+++.+...+ .++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999886432 246899
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeec
Q 011100 133 VITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLD 212 (493)
Q Consensus 133 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViD 212 (493)
||+||++|+.|+++.+..++...++++..++|+.....+...+...++|+|+||++|.+++.... ...+..+++||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~--~~~l~~v~~lViD 166 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK--VVSLHACEICVLD 166 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc--ccchhheeeeEec
Confidence 99999999999999999999999999999999999888877777889999999999999887543 2347789999999
Q ss_pred cccccccCCCHHHHHHHHHhCCc--CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchH
Q 011100 213 EADRVLDVGFEEELRVVFQCLPK--NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290 (493)
Q Consensus 213 Eah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (493)
|||++++++|...+..++..++. ..|+++||||++..+..+....+..+..+...........+.+.+.......+..
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH
Confidence 99999999999999999999886 7899999999999888888777776654444333334445566666555444444
Q ss_pred HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCC
Q 011100 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370 (493)
Q Consensus 291 ~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 370 (493)
.+..++. .....++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 247 ~L~~ll~---~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 247 LLLGLLS---RSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHh---cccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 4444443 3334689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccc
Q 011100 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK 433 (493)
Q Consensus 371 ~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (493)
|++++||+||+|.+..+|+||+||+||.|..|.|++|+.+.+...+..+++.++..++.....
T Consensus 324 p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 324 DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 999999999999999999999999999999999999999999999999998888776544433
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.8e-63 Score=501.99 Aligned_cols=364 Identities=32% Similarity=0.527 Sum_probs=322.3
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc-------CCCCe
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-------DPYGV 129 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~-------~~~~~ 129 (493)
.+..+|+++++++.+++.|...||..|||+|.++|+.+++|+|+++++|||||||++|++|++.++.. ...++
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999987753 12467
Q ss_pred EEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceE
Q 011100 130 LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209 (493)
Q Consensus 130 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~v 209 (493)
++|||+||++||.|+.+.+..+...+++.+..++||.....+...+..+++|+|+||++|.+++... ...++++++|
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~l 274 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVL 274 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEE
Confidence 8999999999999999999999988899999999998888777777788999999999999999876 4568899999
Q ss_pred eeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcch
Q 011100 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289 (493)
Q Consensus 210 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (493)
||||||+|++++|...+..++..++ .+|++++|||+++.++.+.......+..+...........+.+.+..+....+.
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~ 353 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKK 353 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHH
Confidence 9999999999999999999998885 689999999999999999888887777666555444455566767777666666
Q ss_pred HHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh-cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCC
Q 011100 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE-LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368 (493)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 368 (493)
..+..++....... .++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||+++++||
T Consensus 354 ~~l~~~l~~~~~~~-~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 354 QKLFDILKSKQHFK-PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGV 432 (518)
T ss_pred HHHHHHHHhhcccC-CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccC
Confidence 66677665443332 5799999999999999999975 588999999999999999999999999999999999999999
Q ss_pred CCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcC
Q 011100 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425 (493)
Q Consensus 369 di~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (493)
|+|++++||+||+|.+..+|+||+||+||.|..|.+++|++.++...+..+.+.+..
T Consensus 433 Dip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 433 DLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred CcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888877776543
No 18
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-63 Score=467.42 Aligned_cols=368 Identities=38% Similarity=0.583 Sum_probs=325.0
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCC----------
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDP---------- 126 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~---------- 126 (493)
....|..|+++..++++|..+||..||++|..++|.+..| .|++-.|.||||||++|.+|+++.+....
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3567999999999999999999999999999999999988 79999999999999999999999654321
Q ss_pred -CCe--EEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 127 -YGV--LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 127 -~~~--~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
..+ .+||++|||+||.|+...+..++...++++..++||.....+.+.+...++|||+|||||+.++.....+...+
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 123 49999999999999999999999999999999999999999999999999999999999999998876656678
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCC-----cCCceeeeeecccch---------------------HHHHHHH-
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLP-----KNRQTLLFSATMTSD---------------------LQTLLEL- 256 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~---------------------~~~~~~~- 256 (493)
.+++++|+||+|+|.+.|+...+..++..+. ..+|++.||||++-. ++.++..
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 9999999999999999999999999888775 467999999998631 2222222
Q ss_pred -hcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeecc
Q 011100 257 -SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALH 335 (493)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~ 335 (493)
+..++.++...........+....+.|+...++.++++++..+ ++++|||||+++.+.+++-+|..+++....+|
T Consensus 419 g~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred CccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec----CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 2245577777777777777777777888888888777776543 37999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHH
Q 011100 336 SFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL 415 (493)
Q Consensus 336 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~ 415 (493)
+.|.+.+|...+++|++....||||||+++||+|||+|.|||||..|.+.+.|+||.||++|++..|..++++.+.+...
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccc
Q 011100 416 IHEIEAVVGKQLEE 429 (493)
Q Consensus 416 ~~~~~~~~~~~~~~ 429 (493)
+..+..-+....+.
T Consensus 575 ~~KL~ktL~k~~dl 588 (731)
T KOG0347|consen 575 LKKLCKTLKKKEDL 588 (731)
T ss_pred HHHHHHHHhhccCC
Confidence 99998888765543
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-61 Score=490.02 Aligned_cols=377 Identities=33% Similarity=0.505 Sum_probs=327.2
Q ss_pred CCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC-------C
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-------G 128 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~-------~ 128 (493)
.+....|.+++|++.+.++|.++||..|+++|.++++.+++|+|+++.+|||||||++|++|+++.+...+. .
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 162 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCC
Confidence 344567999999999999999999999999999999999999999999999999999999999999876531 4
Q ss_pred eEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccCCcc
Q 011100 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTK 207 (493)
Q Consensus 129 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 207 (493)
.++|||+||++|+.|+++.+..+...+++.+..++||.+...+...+. ..++|+|+||++|..++..+ ...+++++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCc
Confidence 689999999999999999999999888999999999988776666553 56899999999999888765 45688999
Q ss_pred eEeeccccccccCCCHHHHHHHHHhCCc--CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC
Q 011100 208 FLVLDEADRVLDVGFEEELRVVFQCLPK--NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285 (493)
Q Consensus 208 ~vViDEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (493)
+|||||+|++++.+|...+..++..++. ..|++++|||++.++..+...+...+..+...........+.+.+..+..
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 319 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc
Confidence 9999999999999999999999998864 57999999999999888888887777666554444444555666666665
Q ss_pred CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCC
Q 011100 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365 (493)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 365 (493)
..+...+..++.. ....++||||+++..++.++..|...++.+..+||+++.++|..+++.|++|+++|||||++++
T Consensus 320 ~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~ 396 (475)
T PRK01297 320 SDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG 396 (475)
T ss_pred hhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccc
Confidence 5555555555543 3336899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHHHHH
Q 011100 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLS 439 (493)
Q Consensus 366 ~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (493)
+|||+|++++||+|++|.+..+|+||+||+||.|..|.+++|+..+|...+..+++.++..++ .+....+++.
T Consensus 397 ~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 469 (475)
T PRK01297 397 RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS-CEMPPAELLK 469 (475)
T ss_pred cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc-ccCCcHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999988775 2334444444
No 20
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-62 Score=449.24 Aligned_cols=362 Identities=34% Similarity=0.491 Sum_probs=323.9
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC------CCCeEEE
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGVLAL 132 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~------~~~~~~l 132 (493)
..+|++++|++.+++++.+.||.+||-+|+.+||.+++|+|+++.|.||||||.+|++|+++.+... ..++.++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 3689999999999999999999999999999999999999999999999999999999999988643 3478899
Q ss_pred EEcccHHHHHHHHHHHHHhccCC--CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEe
Q 011100 133 VITPTRELAYQLAEQFKALGSGL--HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLV 210 (493)
Q Consensus 133 il~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vV 210 (493)
|++||++||.|++..+.++...+ .+++.-+..+.+.......+...++|+|+||+++..++..+.. ..+..++++|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LV 175 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSFLV 175 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc--hhhhheeeEE
Confidence 99999999999999998876544 3666666766666666778889999999999999999987742 5678899999
Q ss_pred eccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEecccccc-ccccceEEEEEecCCcch
Q 011100 211 LDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK-TVETLKQQYIFIPKNVKD 289 (493)
Q Consensus 211 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 289 (493)
+||||.++..||...+..+...+|+..|.++||||+..++..+..++++.|++..+.+... .+..+.|+++.+.+..+.
T Consensus 176 vDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKf 255 (569)
T KOG0346|consen 176 VDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKF 255 (569)
T ss_pred echhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhH
Confidence 9999999999999999999999999999999999999999999999999999988766543 357788888888888888
Q ss_pred HHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC------
Q 011100 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV------ 363 (493)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------ 363 (493)
..++.+++.-.-. +++|||+|+++.|+++.-+|.++|+..++++|.|+..-|..+++.|+.|-++++||||.
T Consensus 256 lllyallKL~LI~--gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~ 333 (569)
T KOG0346|consen 256 LLLYALLKLRLIR--GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDK 333 (569)
T ss_pred HHHHHHHHHHHhc--CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhh
Confidence 8777777643333 68999999999999999999999999999999999999999999999999999999991
Q ss_pred -----------------------------CCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 364 -----------------------------ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 364 -----------------------------~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
++||||+.+|.+|+|||+|.++..|+||+||++|++++|.+++|+.+.+..
T Consensus 334 ~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 334 LEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred hhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 479999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHhc
Q 011100 415 LIHEIEAVVG 424 (493)
Q Consensus 415 ~~~~~~~~~~ 424 (493)
-...++..+.
T Consensus 414 g~~~le~~~~ 423 (569)
T KOG0346|consen 414 GKESLESILK 423 (569)
T ss_pred hhhHHHHHHh
Confidence 5566655543
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-62 Score=489.59 Aligned_cols=363 Identities=37% Similarity=0.558 Sum_probs=319.4
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC----CCeEEEEEcc
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLALVITP 136 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~----~~~~~lil~P 136 (493)
+|+++++++.++++|..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...+ ...++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 589999999999999999999999999999999999999999999999999999999999886432 2468999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc
Q 011100 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 137 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~ 216 (493)
|++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++... ...+.++++|||||||+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~---~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE---NFDCRAVETLILDEADR 158 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC---CcCcccCCEEEEECHHH
Confidence 999999999999999999999999999999988887777888999999999999998765 34578899999999999
Q ss_pred cccCCCHHHHHHHHHhCCcCCceeeeeecccc-hHHHHHHHhcCCceEEeccccccccccceEEEEEecC-CcchHHHHH
Q 011100 217 VLDVGFEEELRVVFQCLPKNRQTLLFSATMTS-DLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK-NVKDVYLMH 294 (493)
Q Consensus 217 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 294 (493)
+++++|...+..+...++...|+++||||++. .+..+.......+..+...........+.+.+..... ..+...+..
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999999999988999999999985 4777777777777666655544445556666655543 223334444
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++. .....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 239 l~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 239 LLK---QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHh---cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 433 22347899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccc
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEE 429 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (493)
+||+||+|.+...|+||+||+||.|..|.+++|+..+|...+..+++.+...+..
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999998877766544
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-62 Score=461.38 Aligned_cols=371 Identities=35% Similarity=0.553 Sum_probs=333.5
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC----CCeEEEE
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLALV 133 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~----~~~~~li 133 (493)
....|++++|+....++|+..+|..+|.+|+++||..+.|+|++..|.||||||++|++|+++.|.... .|.-+||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 345799999999999999999999999999999999999999999999999999999999999987543 3667999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecc
Q 011100 134 ITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213 (493)
Q Consensus 134 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDE 213 (493)
|.|||+||.|+++.+.+.++..++.++.+.||.+...+... ....+|+|||||+|+.++..... ..-+++.++|+||
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR-i~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER-ISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDE 223 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh-hhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEecc
Confidence 99999999999999999999999999999999997665554 46789999999999999988764 3457899999999
Q ss_pred ccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccc--cccccccceEEEEEecCCcchHH
Q 011100 214 ADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE--GFKTVETLKQQYIFIPKNVKDVY 291 (493)
Q Consensus 214 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (493)
||+|+++||...+..|+..+|+.+|+++||||.+..+..++++.+..|.++.+.. ....+..+.|.|+.++...+...
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 9999999999999999999999999999999999999999999999998877653 35678899999999999999999
Q ss_pred HHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCC
Q 011100 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369 (493)
Q Consensus 292 l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 369 (493)
|..++..... .++|||+.|++.+..+++.+.++ |+....+||.|++..|..++..|...+.-||+|||+++||+|
T Consensus 304 L~sFI~shlk---~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLD 380 (758)
T KOG0343|consen 304 LWSFIKSHLK---KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLD 380 (758)
T ss_pred HHHHHHhccc---cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCC
Confidence 9888876554 57999999999999999999876 788899999999999999999999999999999999999999
Q ss_pred CCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEeccc-HHHHHHHHHHhcCcccccccchH
Q 011100 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND-VDLIHEIEAVVGKQLEEFECKEQ 435 (493)
Q Consensus 370 i~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 435 (493)
+|.|++||++|.|.++++|+||+||++|.+..|.+++++++.+ ..++..+++. +..+.+...+..
T Consensus 381 FpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~~~ 446 (758)
T KOG0343|consen 381 FPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKIDPE 446 (758)
T ss_pred CcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccCHH
Confidence 9999999999999999999999999999999999999999998 4555555553 355555544443
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-62 Score=461.51 Aligned_cols=368 Identities=38% Similarity=0.551 Sum_probs=336.3
Q ss_pred CCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC---------
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--------- 126 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~--------- 126 (493)
+.....|++..+.+.+...++..|+..|+|+|+.+||.+..|++++++|+||||||.+|++|++..+....
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 33445888888999999999999999999999999999999999999999999999999999999987642
Q ss_pred -CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCC
Q 011100 127 -YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSR 205 (493)
Q Consensus 127 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~ 205 (493)
..+.+||++|||+|+.|++.+.+++.-..++++...+|+.+...+...+..+++|+|+|||+|.++++.+ ...|++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g---~i~l~~ 226 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG---KISLDN 226 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc---eeehhh
Confidence 2478999999999999999999999988899999999999999999999999999999999999999987 677899
Q ss_pred cceEeecccccccc-CCCHHHHHHHHHhCCc----CCceeeeeecccchHHHHHHHhcCC-ceEEeccccccccccceEE
Q 011100 206 TKFLVLDEADRVLD-VGFEEELRVVFQCLPK----NRQTLLFSATMTSDLQTLLELSANK-AYFYEAYEGFKTVETLKQQ 279 (493)
Q Consensus 206 ~~~vViDEah~~~~-~~~~~~~~~i~~~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 279 (493)
++++|+||||+|++ ++|.+.++.|+..... ++|.++||||.|..+..+...++.. +.++.+.........+.+.
T Consensus 227 ~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~ 306 (482)
T KOG0335|consen 227 CKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQK 306 (482)
T ss_pred CcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeE
Confidence 99999999999999 9999999999988754 7899999999999999988877776 6777777777888999999
Q ss_pred EEEecCCcchHHHHHHHHhhhhc-CC-----CeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC
Q 011100 280 YIFIPKNVKDVYLMHVLSKMEDM-GI-----RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353 (493)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~~~~-~~-----~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 353 (493)
+.++.+..+...+..++...... .. .+++|||.+++.|..++.+|...++.+..+||..++.+|...+..|+.|
T Consensus 307 i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g 386 (482)
T KOG0335|consen 307 ILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG 386 (482)
T ss_pred eeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC
Confidence 99999999999999988765522 11 3799999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCc
Q 011100 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ 426 (493)
Q Consensus 354 ~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (493)
.+.+||||++++||+|+|+|+|||+||+|.+..+|+|||||+||.|..|.++.|+...+......+.+.+.+.
T Consensus 387 ~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea 459 (482)
T KOG0335|consen 387 KAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEA 459 (482)
T ss_pred CcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988888888877766443
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-61 Score=454.01 Aligned_cols=364 Identities=37% Similarity=0.555 Sum_probs=318.6
Q ss_pred CCccccccCCCCHHHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc------CCCCe
Q 011100 57 DSTVTFAGLGLAEWAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE------DPYGV 129 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~------~~~~~ 129 (493)
-....|..+||++.+...|+. ++|..||.+|.++||.+++|+|++|.++||||||++|++|+++.+.. +..|.
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 346789999999999999985 79999999999999999999999999999999999999999999864 23478
Q ss_pred EEEEEcccHHHHHHHHHHHHHhccCCCc-eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcce
Q 011100 130 LALVITPTRELAYQLAEQFKALGSGLHL-RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208 (493)
Q Consensus 130 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 208 (493)
-+|||+|||+||.|+++.+.++...+.. -.+.+.||.....+...+..+++|+|+|||+|.+++.+... ..++.++|
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRw 290 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRW 290 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeE
Confidence 8999999999999999999999877653 44678888888888888999999999999999999988753 45788999
Q ss_pred EeeccccccccCCCHHHHHHHHHhCC-------------cCCceeeeeecccchHHHHHHHhcCCceEEecc--------
Q 011100 209 LVLDEADRVLDVGFEEELRVVFQCLP-------------KNRQTLLFSATMTSDLQTLLELSANKAYFYEAY-------- 267 (493)
Q Consensus 209 vViDEah~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-------- 267 (493)
||+||+|++++.||...+..|+..+. ...|-+++|||++..+..+....+.++..+...
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 99999999999999999999987762 246889999999999999999998888777621
Q ss_pred -----------------ccccccccceEEEEEecCCcchHHHHHHHHhh-hhcCCCeEEEEecchhhHHHHHHHHHhc--
Q 011100 268 -----------------EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKM-EDMGIRSAIIFVSTCRSCHLLSLLLEEL-- 327 (493)
Q Consensus 268 -----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lVf~~~~~~~~~l~~~l~~~-- 327 (493)
..+..++.+.+.|..+|...+...|..++... ......++|||+.+.+.++.-+..+...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 11344667888999999999888888777543 3334457999999999999888877652
Q ss_pred --------------------CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCc
Q 011100 328 --------------------DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387 (493)
Q Consensus 328 --------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~ 387 (493)
+..+..+||+|++++|..++..|...+..||+|||+++||+|+|+|++||+||+|.++++
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 344677999999999999999999998899999999999999999999999999999999
Q ss_pred ceeeccccccCCCCccEEEEEecccHHHHHHHHHH
Q 011100 388 YVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAV 422 (493)
Q Consensus 388 y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 422 (493)
|+||+||++|+|.+|.+++|+.+.+.++++.++..
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999999988887654
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-59 Score=467.26 Aligned_cols=369 Identities=34% Similarity=0.546 Sum_probs=321.9
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
..+|+++++++.+.++|.++||..|+|+|.++++.+++++|++++||||||||++|++|++..+.....+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999887655577899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
+|+.|+.+.+..++...++.+..+.|+.....+...+..+++|+|+||+++..++... ...++++++|||||||++.
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~---~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR---HLRVDDLKLFILDEADEML 183 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC---CcccccccEEEEecHHHHH
Confidence 9999999999999888888999999998887777777778899999999999988765 3457899999999999999
Q ss_pred cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC-cchHHHHHHHH
Q 011100 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN-VKDVYLMHVLS 297 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 297 (493)
+.++...+..++..++.+.|++++|||+++++..+...+...+..............+.+.+..+... .+...+..++
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 262 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLY- 262 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHH-
Confidence 99999999999999999999999999999988888777776665544433333445555555554432 2222333333
Q ss_pred hhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEE
Q 011100 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377 (493)
Q Consensus 298 ~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 377 (493)
......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 263 --~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 263 --ETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred --HhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 333346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccc
Q 011100 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK 433 (493)
Q Consensus 378 ~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (493)
+||+|.+..+|+||+||+||.|..|.|++|+++++...+..+++.+...+++....
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999999999999999999999999988887775543
No 26
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-61 Score=434.71 Aligned_cols=365 Identities=36% Similarity=0.522 Sum_probs=320.7
Q ss_pred CCCCcccc-ccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC------CC
Q 011100 55 TTDSTVTF-AGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PY 127 (493)
Q Consensus 55 ~~~~~~~~-~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~------~~ 127 (493)
.+.+..+| +.+.-.+++.+.+++.||.+|+|+|.+|+|.+++|.|++..|.||+|||++|++|-+-++... ..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 44455677 455778999999999999999999999999999999999999999999999999998776532 34
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTK 207 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 207 (493)
++.+|+++||++|+.|+.-++.... ..|+..++++||.+..++...+..+.+|+++||++|.++.... ...+..+.
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n---~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN---VINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC---eeeeeeeE
Confidence 7789999999999999998887764 3488999999999999999999999999999999999998876 67789999
Q ss_pred eEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEecccc-ccccccceEEEEEecCC
Q 011100 208 FLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG-FKTVETLKQQYIFIPKN 286 (493)
Q Consensus 208 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 286 (493)
++|+||||+|++++|..+++.|+-.+.+++|+++.|||+|..+..+...++..+....+..- ......+++.+++..+.
T Consensus 370 YlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~ 449 (629)
T KOG0336|consen 370 YLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDS 449 (629)
T ss_pred EEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccH
Confidence 99999999999999999999999999999999999999999999999999988876654432 23345566666544455
Q ss_pred cchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCC
Q 011100 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366 (493)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 366 (493)
.+......++..+.. ..++||||..+..|+.|..-|.-.|+....+||+-.+.+|+..++.|+.|+++||||||+++|
T Consensus 450 ~k~~~~~~f~~~ms~--ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSR 527 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSS--NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASR 527 (629)
T ss_pred HHHHHHHHHHHhcCC--CceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhc
Confidence 555555555555443 369999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcC
Q 011100 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425 (493)
Q Consensus 367 Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (493)
|+|++++.||+|||+|.+.++|+||+||+||+|+.|.+++|++.+|......+.+.+..
T Consensus 528 GlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 528 GLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred CCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888887776544
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.2e-60 Score=428.85 Aligned_cols=360 Identities=34% Similarity=0.561 Sum_probs=318.6
Q ss_pred CCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc--------CCC
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE--------DPY 127 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~--------~~~ 127 (493)
+.+..+|.++..+..+++.|++.|+.+|||+|.+.+|.+++|+|.|-.|-||||||++|.+|++..... ...
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 445678999999999999999999999999999999999999999999999999999999999865432 234
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCC------CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCC
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGL------HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPP 201 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 201 (493)
|+..||+||+|+||.|.++.+..++..+ .+++..+.||....++......+.+|+|+|||+|.+++.+. ..
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK---~~ 322 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK---IM 322 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh---hc
Confidence 7889999999999999999888776533 36788899999999999999999999999999999999876 55
Q ss_pred ccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEE
Q 011100 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYI 281 (493)
Q Consensus 202 ~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (493)
.++-++++++||||+|.++||...++.++..+...+|+++||||+|..++.+....+-+|..+++.......-++.+.+.
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevE 402 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVE 402 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999998888776665555656555
Q ss_pred EecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEc
Q 011100 282 FIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT 361 (493)
Q Consensus 282 ~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 361 (493)
++....+..+++..+++ . ..++||||.....++.+.++|--.|..++.+||+-.+++|...++.|+.|+-+|||||
T Consensus 403 yVkqEaKiVylLeCLQK---T-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQK---T-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHHhhhhhhhHHHHhcc---C-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 56556666666555543 2 3789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH-HHHHHHHHH
Q 011100 362 DVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV-DLIHEIEAV 422 (493)
Q Consensus 362 ~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~~~~~ 422 (493)
|+++.|+|+|++.||||||+|...+.|+|||||+||.|+.|.+.+|+..+.. ..+..+...
T Consensus 479 DVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~L 540 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHL 540 (610)
T ss_pred cchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987643 333444433
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-58 Score=428.27 Aligned_cols=368 Identities=33% Similarity=0.522 Sum_probs=334.0
Q ss_pred CCCCCCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-----C
Q 011100 52 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-----P 126 (493)
Q Consensus 52 ~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-----~ 126 (493)
.+.++....+|+.++.+..+..++.+.-|.+|||+|.+++|..+.|+|++-.|.||||||.+|+.|++-+++.. .
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g 294 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPG 294 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCC
Confidence 34455667889999999999999999999999999999999999999999999999999999999999888754 3
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCc
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRT 206 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 206 (493)
.++..||+||||+||.|++.+++++++.+|+++++++||.+.+++...+..++.||||||+||.+++... ...+.++
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK---atn~~rv 371 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK---ATNLSRV 371 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh---cccceee
Confidence 5788999999999999999999999999999999999999999999999999999999999999999876 5668999
Q ss_pred ceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC
Q 011100 207 KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286 (493)
Q Consensus 207 ~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (493)
.++|||||++|.+.||..+++.|...+.+++|+++||||++..++.+.+..+..++.+...+-......+.|.+.+++..
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE 451 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999888777666666677888888777764
Q ss_pred c-chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCC
Q 011100 287 V-KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365 (493)
Q Consensus 287 ~-~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 365 (493)
. +..++..-+-.+.. .+++|||+.-...++.++..|+..++++..+||+|.+.+|.+++..|+.++..|||+||+++
T Consensus 452 ~~Kl~wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa 529 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSS--EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA 529 (731)
T ss_pred HHHHHHHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh
Confidence 3 33444433333332 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhc
Q 011100 366 RGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424 (493)
Q Consensus 366 ~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 424 (493)
+|+|++.+..|||||+-.+++.|.|||||+||+|..|.+++|+++.|..+.-.|.+.+.
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999887777766553
No 29
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-58 Score=425.59 Aligned_cols=368 Identities=30% Similarity=0.480 Sum_probs=314.7
Q ss_pred CCCCCccccccCCCCHHHHH----------HHHHcCCCCCcHHHHhhhhhhhc---------CCcEEEEccCCCCchhHh
Q 011100 54 TTTDSTVTFAGLGLAEWAVQ----------TCKELGMRRPTPVQTHCIPKILE---------GKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 54 ~~~~~~~~~~~~~l~~~l~~----------~l~~~g~~~~~~~Q~~~i~~i~~---------~~~~lv~a~TGsGKTl~~ 114 (493)
....+...|+.+++++.... .+..+++.+.+|+|..++|+++. .+|++|.||||||||++|
T Consensus 121 ~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY 200 (620)
T KOG0350|consen 121 AQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAY 200 (620)
T ss_pred cCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeee
Confidence 33445667788887765544 48889999999999999999853 589999999999999999
Q ss_pred HHHHHHHhhcCC-CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC-C----cEEEECcch
Q 011100 115 ALPILHRLAEDP-YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR-P----HVVIATPGR 188 (493)
Q Consensus 115 ~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~----~Iiv~Tp~~ 188 (493)
.+|+++.+..++ ...+++||+||++|+.|+++.|..++...|+.|+.+.|..+...+...+.+. + ||+|+||||
T Consensus 201 ~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGR 280 (620)
T KOG0350|consen 201 VIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGR 280 (620)
T ss_pred hhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchH
Confidence 999999998874 3578999999999999999999999999999999999999888877777543 3 899999999
Q ss_pred HHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC----------------------------------
Q 011100 189 IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP---------------------------------- 234 (493)
Q Consensus 189 l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~---------------------------------- 234 (493)
|.+++.+.+ ...|..++|+||||||+|++..|..++-.++..+.
T Consensus 281 LVDHl~~~k--~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~ 358 (620)
T KOG0350|consen 281 LVDHLNNTK--SFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLY 358 (620)
T ss_pred HHHhccCCC--CcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcC
Confidence 999999765 45689999999999999999877777655543321
Q ss_pred cCCceeeeeecccchHHHHHHHhcCCceEEecc----ccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEE
Q 011100 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAY----EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIF 310 (493)
Q Consensus 235 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf 310 (493)
+..+.+.+|||+..+-.++..+.++.|..+.+. ..+..+..+.+.++......+...+..++.... ..++|+|
T Consensus 359 ~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k---~~r~lcf 435 (620)
T KOG0350|consen 359 PPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK---LNRTLCF 435 (620)
T ss_pred chhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh---cceEEEE
Confidence 123478999999999999999888888555444 456778888888888888788888888776543 3689999
Q ss_pred ecchhhHHHHHHHHH----hcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCC
Q 011100 311 VSTCRSCHLLSLLLE----ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386 (493)
Q Consensus 311 ~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~ 386 (493)
+++.+.+.+++..|+ .....+..+.|+++...|.+.++.|+.|++++|||+|+++||||+.+++.|||||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999887 2356777899999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCc
Q 011100 387 DYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ 426 (493)
Q Consensus 387 ~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (493)
.|+||+||++|+|+.|.|++++..++...+..+.+..+..
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~ 555 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLW 555 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhccc
Confidence 9999999999999999999999999998888887776553
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-58 Score=418.87 Aligned_cols=370 Identities=33% Similarity=0.540 Sum_probs=344.2
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
..+|++++|++.++++++..||.+|+.+|+.||..+..|.|+++++.+|+|||.+|.+++++.+........+|+++|++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtr 104 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR 104 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchH
Confidence 45899999999999999999999999999999999999999999999999999999999999998776678899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
+|+.|+......++...+.++..+.||.....+...+ ...++|+|+||+++.+++... ......++++|+||||.+
T Consensus 105 eLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmfvlDEaDEm 181 (397)
T KOG0327|consen 105 ELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMFVLDEADEM 181 (397)
T ss_pred HHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEEeecchHhh
Confidence 9999999999999999999999999998877554444 456999999999999999877 445677999999999999
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHH
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (493)
+..+|.+.+..+++.++++.|++++|||+|.++..+...+...+..+.+.....+...+++.|+.+....+...+..+..
T Consensus 182 Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~ 261 (397)
T KOG0327|consen 182 LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR 261 (397)
T ss_pred hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888877888899999999988888877777776
Q ss_pred hhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEE
Q 011100 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377 (493)
Q Consensus 298 ~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 377 (493)
. ..+.+||||+++.++.+...|...++.+..+|+.|.+.+|..++..|+.|..+|||+|+.+++|+|+..+..||
T Consensus 262 ~-----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 262 R-----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred h-----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee
Confidence 2 24789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHH
Q 011100 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQE 436 (493)
Q Consensus 378 ~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (493)
||++|...+.|+||+||+||.|.+|.++.++..+|...+.+++++++..+++.+.+..+
T Consensus 337 nydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 337 NYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 99999999999999999999999999999999999999999999999999998876554
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-58 Score=411.92 Aligned_cols=380 Identities=28% Similarity=0.450 Sum_probs=327.2
Q ss_pred CCCCCCCCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCC
Q 011100 50 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPY 127 (493)
Q Consensus 50 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~ 127 (493)
+|+++. -+..+|++|+|.++++++++.++|..|+.+|+.|+|.++.. +++|.++..|+|||.||.+.++.++...-.
T Consensus 81 dpnsPl-yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~ 159 (477)
T KOG0332|consen 81 DPNSPL-YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV 159 (477)
T ss_pred CCCCCc-cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc
Confidence 344443 46788999999999999999999999999999999999986 789999999999999999999999988777
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTK 207 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 207 (493)
.+.++.|+|||+||.|+.+.+.++++..++.......+.... ... .-..+|+|+||+.+.+++.... ...++.++
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~--~i~eqIviGTPGtv~Dlm~klk--~id~~kik 234 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGN--KLTEQIVIGTPGTVLDLMLKLK--CIDLEKIK 234 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCC--cchhheeeCCCccHHHHHHHHH--hhChhhce
Confidence 888999999999999999999999998888887776665211 000 1125899999999999887733 44578889
Q ss_pred eEeeccccccccC-CCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC
Q 011100 208 FLVLDEADRVLDV-GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN 286 (493)
Q Consensus 208 ~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (493)
.+|+||||.|++. ||.+.-..|...+|++.|+++||||....+..+.......+..+.+.........+.+.|+.|+..
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch
Confidence 9999999998864 789999999999999999999999999999999999998888888888888899999999998764
Q ss_pred -cchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCC
Q 011100 287 -VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365 (493)
Q Consensus 287 -~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 365 (493)
.+...+..+. .....++.||||.++++|.+++..|.+.|..+.++||+|...+|..++++|+.|..+|||+|++++
T Consensus 315 ~~K~~~l~~ly---g~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A 391 (477)
T KOG0332|consen 315 DDKYQALVNLY---GLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA 391 (477)
T ss_pred hhHHHHHHHHH---hhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh
Confidence 3444444433 333357899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCeEEEecCCC------CCCcceeeccccccCCCCccEEEEEecc-cHHHHHHHHHHhcCcccccccchHHHH
Q 011100 366 RGLDIPTVDLVLNYDIPR------YPRDYVHRVGRTARAGRGGLAVSFVTQN-DVDLIHEIEAVVGKQLEEFECKEQEVL 438 (493)
Q Consensus 366 ~Gidi~~v~~Vi~~~~p~------s~~~y~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (493)
||||++.|++|||||+|. +.+.|+|||||+||.|+.|.++.|+... ....+..|++.++..+.....+..+-+
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 999999999999999996 4678999999999999999999999755 567888999998877776655443333
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=453.62 Aligned_cols=366 Identities=35% Similarity=0.539 Sum_probs=339.9
Q ss_pred CCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-----CCCeE
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-----PYGVL 130 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-----~~~~~ 130 (493)
+.+..+|...|++..++.-++++||..|+|+|.+|||+|+.|+|+|..|.||||||++|++|++.++... ..|+.
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 3456789999999999999999999999999999999999999999999999999999999999887644 34889
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEe
Q 011100 131 ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLV 210 (493)
Q Consensus 131 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vV 210 (493)
+||++||++|+.|+++++..++..+++++++++|+.....+...+..++.|+|||||++.+++.........+.++.+||
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999998877655556677778999
Q ss_pred eccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEec-CCcch
Q 011100 211 LDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKD 289 (493)
Q Consensus 211 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 289 (493)
+||||+|.+.+|.+....|++.+++.+|+++||||+|..++.+....+..|..+.+.........+.+.+..++ ...+.
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 99999999999999999999999999999999999999999999988888888777766666778888888888 78889
Q ss_pred HHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCC
Q 011100 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369 (493)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 369 (493)
..|..++..... ..++||||.....|..+.+.|.+.|+.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|
T Consensus 601 ~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLd 678 (997)
T KOG0334|consen 601 LKLLELLGERYE--DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLD 678 (997)
T ss_pred HHHHHHHHHHhh--cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccc
Confidence 999999987666 369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHh
Q 011100 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVV 423 (493)
Q Consensus 370 i~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 423 (493)
++.+.+|||||+|...++|+||+||+||+|+.|.|++|+++++..+...|.+.+
T Consensus 679 v~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 679 VKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888888887
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-56 Score=405.53 Aligned_cols=365 Identities=38% Similarity=0.584 Sum_probs=340.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-CCeEEEEEccc
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-YGVLALVITPT 137 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~-~~~~~lil~Pt 137 (493)
...|..+||+..+.+++..-||..|+|+|++.+|.+++++|++..+-||||||.||++|+++.+.... .+.+++++.||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 56799999999999999999999999999999999999999999999999999999999999997653 46789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++|+.|..+.++.++...++++.+++||....++...+..++|||++||+++..+.-.. ...++.+.|||+||+|++
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem---~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM---TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe---eccccceeeeeehhhhHH
Confidence 99999999999999999999999999999999999999999999999999987665444 456889999999999999
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHH
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (493)
..+||.+.+..++..++..+|+++||||+|.++..+.+..+.++..+.+..+....+.+...+..+....+..+|..++.
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~ 256 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILG 256 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888877777777888888888888888888888887
Q ss_pred hhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEE
Q 011100 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377 (493)
Q Consensus 298 ~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 377 (493)
.... ..+++|||.+..+++.+...|+..|+.+..++|.|++.-|...+..|+.++..+||.|++++||+|+|..+.||
T Consensus 257 ~~~~--~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 257 GRIK--DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred cccc--ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 6544 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccc
Q 011100 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428 (493)
Q Consensus 378 ~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (493)
|||+|.+...|.||+||+.|+|+.|++|.++..++..++..+...++..+.
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 999999999999999999999999999999999999999999988887654
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.5e-55 Score=454.43 Aligned_cols=359 Identities=20% Similarity=0.260 Sum_probs=279.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 66 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 66 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
.+++++.++|++.||.+||++|.++++.+++|+|+++++|||||||++|++|+++.+..++ +.++|||+||++|+.|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999999987653 678999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHH-hcCCCCCCccCCcceEeeccccccccCCCHH
Q 011100 146 EQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLL-EEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l-~~~~~~~~~l~~~~~vViDEah~~~~~~~~~ 224 (493)
+.+..+. ..++++..+.|+..... ...+...++|+|+||+++...+ .....+...++++++|||||||.+.+. |+.
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-FGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-cHH
Confidence 9999987 44788888888877543 3445667999999999987533 222222234789999999999998763 766
Q ss_pred HHHHHHHh-------CCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC------------
Q 011100 225 ELRVVFQC-------LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK------------ 285 (493)
Q Consensus 225 ~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 285 (493)
.+..++.. .+.++|++++|||+++..+.... ....+... +.... .+........+.+.
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~-l~g~~~~~-i~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPAAAASR-LIGAPVVA-VTEDG-SPRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHH-HcCCCeEE-ECCCC-CCcCceEEEEecCCcccccccccccc
Confidence 65554443 35678999999999987664434 33444332 21111 11112222222221
Q ss_pred -CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc--------CCceeeccCCCCHHHHHHHHHHhhcCCCe
Q 011100 286 -NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL--------DQEAVALHSFKSQSQRLSALHRFKSGQAT 356 (493)
Q Consensus 286 -~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 356 (493)
.........++..+...+ .++||||+|++.++.++..|+.. +..+..+||++++++|..++++|++|+++
T Consensus 253 r~~~~~~~~~~l~~l~~~~-~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 253 RRSASAEAADLLADLVAEG-ARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred ccchHHHHHHHHHHHHHCC-CCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 001112233333333333 68999999999999999998764 56788999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEec--ccHHHHHHHHHHhcCccccccc
Q 011100 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ--NDVDLIHEIEAVVGKQLEEFEC 432 (493)
Q Consensus 357 vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 432 (493)
+||||+++++|||++++++||+|+.|.+..+|+||+||+||.|+.|.++++... .|...+...+..++..++....
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~ 409 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVF 409 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCcccee
Confidence 999999999999999999999999999999999999999999999999999874 4555677777777777766443
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3e-53 Score=439.62 Aligned_cols=338 Identities=21% Similarity=0.278 Sum_probs=259.2
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 65 LGLAEWAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 65 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
++-...+...++. +|+..|+|+|.++|+.++.|+|+++.+|||+|||+||++|++.. +..+|||+|+++|+.+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqD 515 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQD 515 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHH
Confidence 3344556555554 89999999999999999999999999999999999999999864 4579999999999987
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc------CCCcEEEECcchHHH---HHhcCCCCCCccCCcceEeeccc
Q 011100 144 LAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM------NRPHVVIATPGRIKV---LLEEDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Iiv~Tp~~l~~---~l~~~~~~~~~l~~~~~vViDEa 214 (493)
+...+... ++.+..+.++....++...+. +.++|+|+||++|.. ++..... ......+.+||||||
T Consensus 516 QV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~-L~~~~~LslIVIDEA 590 (1195)
T PLN03137 516 QIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN-LNSRGLLARFVIDEA 590 (1195)
T ss_pred HHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh-hhhccccceeccCcc
Confidence 66666553 789999999988766544332 568999999999852 2221110 111245789999999
Q ss_pred cccccCC--CHHHHHHH--HHhCCcCCceeeeeecccchHHHHHHHhc--CCceEEeccccccccccceEEEEEecCCcc
Q 011100 215 DRVLDVG--FEEELRVV--FQCLPKNRQTLLFSATMTSDLQTLLELSA--NKAYFYEAYEGFKTVETLKQQYIFIPKNVK 288 (493)
Q Consensus 215 h~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (493)
|++++|| |...+..+ +....+..+++++|||++..+...+...+ ..+..+. ..... .+..|.+++...+
T Consensus 591 HcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr--~Sf~R---pNL~y~Vv~k~kk 665 (1195)
T PLN03137 591 HCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR--QSFNR---PNLWYSVVPKTKK 665 (1195)
T ss_pred hhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee--cccCc---cceEEEEeccchh
Confidence 9999987 66666543 33444578899999999987765433322 2222221 11111 1234444443221
Q ss_pred -hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Q 011100 289 -DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367 (493)
Q Consensus 289 -~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 367 (493)
...+..++... .....+||||++++.|+.++..|...|+.+..|||+|++.+|..+++.|..|+++|||||+++++|
T Consensus 666 ~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 666 CLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred HHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 12233333221 112578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHH
Q 011100 368 LDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420 (493)
Q Consensus 368 idi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 420 (493)
||+|+|++||||++|.+++.|+||+|||||.|.+|.|++|+...|...+..+.
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877666554
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.6e-54 Score=410.41 Aligned_cols=350 Identities=28% Similarity=0.433 Sum_probs=316.5
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.....|+.+-|...++.+|+..+|..|+++|..|||.++.+-|+||++..|+|||++|.+.+++.+..+.....++||+|
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999988877889999999
Q ss_pred cHHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 137 TRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 137 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
||+++.|+.+.+..++..+ |++|.+++||+........+ ..++|+|||||++..++..+ ...++.++++|+||||
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~---~~n~s~vrlfVLDEAD 177 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELG---AMNMSHVRLFVLDEAD 177 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhc---CCCccceeEEEeccHH
Confidence 9999999999999998744 89999999999876665554 56889999999999999877 6678999999999999
Q ss_pred cccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcc------
Q 011100 216 RVLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVK------ 288 (493)
Q Consensus 216 ~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 288 (493)
.+++ ..|...+..|+..+|..+|++++|||.|..+...+..++.++.++.........-.++++++..+....
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284|consen 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred hhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHH
Confidence 9998 569999999999999999999999999999999999999999999888888888889998887765432
Q ss_pred --hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCC
Q 011100 289 --DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366 (493)
Q Consensus 289 --~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 366 (493)
...|-++++ .....++||||+....|+-++.+|...|+.+-++.|.|++.+|..+++.+++-.++|||+||..+|
T Consensus 258 lklq~L~~vf~---~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaR 334 (980)
T KOG4284|consen 258 LKLQKLTHVFK---SIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHHh---hCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhc
Confidence 222333333 333467999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 367 Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
|||-+++++|||.|+|.+.++|.||||||||.|..|.+++|+.....
T Consensus 335 GIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 335 GIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999976643
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6e-52 Score=417.33 Aligned_cols=363 Identities=20% Similarity=0.274 Sum_probs=265.9
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
.+||..|+|+|.++++.+++|+|+++.+|||||||++|++|++.. +..+|||+|+++|+.|+.+.+..+ +
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----G 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----C
Confidence 389999999999999999999999999999999999999999863 456999999999999999988765 6
Q ss_pred ceEEEEEcCCCHHHHHHH----hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC--CHHHHHHH-
Q 011100 157 LRCEVVVGGMDLLTQAKS----LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG--FEEELRVV- 229 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~--~~~~~~~i- 229 (493)
+.+..+.++....+.... ..+.++|+++||+++......... .....++++|||||||++.+|+ |...+..+
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~-l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT-LEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH-HHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 788888887765433221 245689999999987432110000 0025678999999999999886 45555443
Q ss_pred --HHhCCcCCceeeeeecccchHHHHHHHh--cCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhh-hcCC
Q 011100 230 --FQCLPKNRQTLLFSATMTSDLQTLLELS--ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKME-DMGI 304 (493)
Q Consensus 230 --~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 304 (493)
...+ ++.+++++|||+++.+....... ...+..+... .. ..++ .+....... ..+..++..+. ....
T Consensus 155 ~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s--~~-r~nl--~~~v~~~~~--~~~~~l~~~l~~~~~~ 226 (470)
T TIGR00614 155 SLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS--FD-RPNL--YYEVRRKTP--KILEDLLRFIRKEFKG 226 (470)
T ss_pred HHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC--CC-CCCc--EEEEEeCCc--cHHHHHHHHHHHhcCC
Confidence 3333 57889999999998765433322 2333333211 11 1111 222222221 12222333332 2233
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRY 384 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s 384 (493)
..+||||++++.++.++..|+..++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.+
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCc-ccccccchHHHHHHHHHHHHHHHHHHHhhccc
Q 011100 385 PRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQ-LEEFECKEQEVLSDITRVYKARRVATMKLMDD 458 (493)
Q Consensus 385 ~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (493)
.+.|+||+||+||.|.+|.|++|+++.|...++.+....... .........+.+..+.+...+++.....++.+
T Consensus 307 ~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~ 381 (470)
T TIGR00614 307 MESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYKLKLYEMMEYCLNSSTCRRLILLSHFGE 381 (470)
T ss_pred HHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhccccCHHHHHHHHcCC
Confidence 999999999999999999999999999988777765432111 00111112222333344455667777777655
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-52 Score=396.09 Aligned_cols=363 Identities=32% Similarity=0.450 Sum_probs=306.7
Q ss_pred cccccc----CCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-----CCCe
Q 011100 59 TVTFAG----LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-----PYGV 129 (493)
Q Consensus 59 ~~~~~~----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-----~~~~ 129 (493)
..+|++ ....+.+++.+...+|..|+|+|.+|+|.++.++++++++|||||||++|.+|++.++... ..|.
T Consensus 131 l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl 210 (593)
T KOG0344|consen 131 LLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGL 210 (593)
T ss_pred cccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccce
Confidence 445554 4577889999999999999999999999999999999999999999999999999988653 3478
Q ss_pred EEEEEcccHHHHHHHHHHHHHhc--cCCCceEEEEEcCCCHHHHHH-HhcCCCcEEEECcchHHHHHhcCCCCCCccCCc
Q 011100 130 LALVITPTRELAYQLAEQFKALG--SGLHLRCEVVVGGMDLLTQAK-SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRT 206 (493)
Q Consensus 130 ~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~-~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 206 (493)
+++|+.||++|+.|+++++.++. ...++++..+........... .....++|+|+||-++..++..... ...+..+
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~-~idl~~V 289 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKL-NIDLSKV 289 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCc-cchhhee
Confidence 89999999999999999999998 666666666555433222211 1234579999999999888876532 3568899
Q ss_pred ceEeeccccccccC-CCHHHHHHHHHhCC-cCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEec
Q 011100 207 KFLVLDEADRVLDV-GFEEELRVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP 284 (493)
Q Consensus 207 ~~vViDEah~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (493)
.++|+||||++.+. .|..++..|+..+. ++..+-+||||.+..++++..........+.+.........+.|..+++.
T Consensus 290 ~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~g 369 (593)
T KOG0344|consen 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCG 369 (593)
T ss_pred eeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeee
Confidence 99999999999998 88899988887765 57788899999999999999998887777766666556666777666665
Q ss_pred C-CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHH-HhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC
Q 011100 285 K-NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLL-EELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362 (493)
Q Consensus 285 ~-~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 362 (493)
. ..+...+..++... -..++|||+.+.+.|.+|...| .-.++++.++||+.++.+|..++++|+.|++.|||||+
T Consensus 370 se~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd 446 (593)
T KOG0344|consen 370 SEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD 446 (593)
T ss_pred cchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh
Confidence 4 44555555555543 3478999999999999999999 56689999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcC
Q 011100 363 VASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGK 425 (493)
Q Consensus 363 ~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (493)
+++||+|+.++++|||||+|.+..+|+||+||+||+|+.|.+++||+..|...++.+.+.+..
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988876543
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.7e-50 Score=415.46 Aligned_cols=370 Identities=21% Similarity=0.298 Sum_probs=270.4
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 67 LAEWAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 67 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
......+.|+. +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. ...+|||+|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHH
Confidence 34444455554 79999999999999999999999999999999999999999864 446999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCCCHHHHHHH----hcCCCcEEEECcchHHH--HHhcCCCCCCccCCcceEeecccccccc
Q 011100 146 EQFKALGSGLHLRCEVVVGGMDLLTQAKS----LMNRPHVVIATPGRIKV--LLEEDPDIPPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp~~l~~--~l~~~~~~~~~l~~~~~vViDEah~~~~ 219 (493)
+.+..+ |+.+..+.++......... ..+..+++++||+++.. ++.. ....++++|||||||++.+
T Consensus 83 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~-----l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 83 DQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH-----LAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH-----HhhCCCCEEEEeCcccccc
Confidence 988875 6777777777665443322 23568999999999863 2221 1134678999999999998
Q ss_pred CC--CHHHHHH---HHHhCCcCCceeeeeecccchHHHH-HHH-hcCCceEEeccccccccccceEEEEEecCCcchHHH
Q 011100 220 VG--FEEELRV---VFQCLPKNRQTLLFSATMTSDLQTL-LEL-SANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYL 292 (493)
Q Consensus 220 ~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (493)
|+ |...+.. +...+ ++.+++++|||++...... ... ....+..... .... .+ ..|...........+
T Consensus 154 ~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~~~r-~n--l~~~v~~~~~~~~~l 227 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDR-PN--IRYTLVEKFKPLDQL 227 (607)
T ss_pred ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--CCCC-Cc--ceeeeeeccchHHHH
Confidence 76 4544433 33333 4788999999999865442 222 2233332221 1111 11 223333332233333
Q ss_pred HHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCC
Q 011100 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372 (493)
Q Consensus 293 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 372 (493)
..+ +......++||||++++.|+.++..|...++.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|+
T Consensus 228 ~~~---l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 228 MRY---VQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHH---HHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCC
Confidence 333 33334478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcc-cccccchHHHHHHHHHHHHHHHHH
Q 011100 373 VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQL-EEFECKEQEVLSDITRVYKARRVA 451 (493)
Q Consensus 373 v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 451 (493)
+++||+||+|.+.++|+||+||+||.|.+|.|++|+++.|...++.+........ .......-..+..+.+...+++..
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Crr~~ 384 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQQQDIERHKLNAMGAFAEAQTCRRLV 384 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 9999999999999999999999999999999999999998777665543211000 000000111122233345577777
Q ss_pred HHhhcccch
Q 011100 452 TMKLMDDGF 460 (493)
Q Consensus 452 ~~~~~~~~~ 460 (493)
...++.+.+
T Consensus 385 ~l~yf~e~~ 393 (607)
T PRK11057 385 LLNYFGEGR 393 (607)
T ss_pred HHHHhCCCC
Confidence 777777655
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-49 Score=416.48 Aligned_cols=334 Identities=24% Similarity=0.328 Sum_probs=260.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.|++++|++++.++++..||.+|+|+|.+|++. +.+|+|+++++|||||||++|.++++..+.. +.++||++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 588999999999999999999999999999998 7889999999999999999999999999865 668999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc
Q 011100 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~ 219 (493)
||.|+++.+..+. .+|+++..++|+...... ....++|+|+||+++..++.+.. ..++++++||+||+|.+.+
T Consensus 79 La~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 79 LASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred HHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECccccCC
Confidence 9999999999764 458999999998764322 23568999999999999887652 3478999999999999998
Q ss_pred CCCHHHHHHHHHhC---CcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEE------------EEec
Q 011100 220 VGFEEELRVVFQCL---PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQY------------IFIP 284 (493)
Q Consensus 220 ~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 284 (493)
.+++..++.++..+ ..+.|++++|||+++. ..+..+.....+ ...++. ..+.... ..+.
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~----~~~~rp-v~l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELV----DSEWRP-IDLREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcc----cCCCCC-CCCeeeEecCCeeccccccccCC
Confidence 88988888776554 4678999999999863 233322211110 000110 0111100 0011
Q ss_pred CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC------------------------------------
Q 011100 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD------------------------------------ 328 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~------------------------------------ 328 (493)
...+...+..+...+. . .+++||||++++.|+.++..|....
T Consensus 226 ~~~~~~~~~~~~~~~~-~-~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 226 VPSKDDTLNLVLDTLE-E-GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred CccchHHHHHHHHHHH-c-CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 1111222222222222 2 3689999999999999888876431
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----ec-----CCCCCCcceeeccccccCC
Q 011100 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----YD-----IPRYPRDYVHRVGRTARAG 399 (493)
Q Consensus 329 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~-----~p~s~~~y~qr~GR~gR~g 399 (493)
..++++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 35788999999999999999999999999999999999999999999997 66 5888999999999999999
Q ss_pred CC--ccEEEEEeccc
Q 011100 400 RG--GLAVSFVTQND 412 (493)
Q Consensus 400 ~~--g~~~~~~~~~~ 412 (493)
.+ |.+++++...+
T Consensus 384 ~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 384 LDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCceEEEEecCch
Confidence 75 88898887653
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-48 Score=404.33 Aligned_cols=326 Identities=23% Similarity=0.327 Sum_probs=255.8
Q ss_pred HHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 74 TCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 74 ~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
.|++ +||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+.+.+..+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 3443 89999999999999999999999999999999999999999853 446899999999999999988875
Q ss_pred cCCCceEEEEEcCCCHHHHHHH----hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC--CHHHH
Q 011100 153 SGLHLRCEVVVGGMDLLTQAKS----LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG--FEEEL 226 (493)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~--~~~~~ 226 (493)
|+.+..+.++.+..+.... ..+..+|+++||+++....... .....++++|||||||++.+|| |...+
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 6788888888776544332 2467899999999985422111 1224578999999999999876 55555
Q ss_pred HHH---HHhCCcCCceeeeeecccchHHHHHHHhc--CCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhh
Q 011100 227 RVV---FQCLPKNRQTLLFSATMTSDLQTLLELSA--NKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301 (493)
Q Consensus 227 ~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (493)
..+ ...++ +.+++++|||++..+.......+ ..+..+. .... ..+..+.......+...+..++....
T Consensus 151 ~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~---r~nl~~~v~~~~~~~~~l~~~l~~~~- 223 (591)
T TIGR01389 151 QRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI--TSFD---RPNLRFSVVKKNNKQKFLLDYLKKHR- 223 (591)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCC---CCCcEEEEEeCCCHHHHHHHHHHhcC-
Confidence 443 34444 44599999999987665433322 2222221 1111 11223333334444445555554322
Q ss_pred cCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC
Q 011100 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI 381 (493)
Q Consensus 302 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 381 (493)
..++||||++++.++.++..|...++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+|++
T Consensus 224 --~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 --GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred --CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHH
Q 011100 382 PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421 (493)
Q Consensus 382 p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 421 (493)
|.|.+.|+|++||+||.|..|.|+++++..|...+..+.+
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998877666543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.3e-48 Score=412.46 Aligned_cols=338 Identities=23% Similarity=0.301 Sum_probs=252.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC------CCCeEEEEEcccHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGVLALVITPTREL 140 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~------~~~~~~lil~Pt~~L 140 (493)
+++.+.+.++. +|..|+|+|.++++.+++|+|++++||||||||++|.+|+++.+... ..+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66777777666 78899999999999999999999999999999999999999888642 235679999999999
Q ss_pred HHHHHHHHHH-------hc----cCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcce
Q 011100 141 AYQLAEQFKA-------LG----SGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208 (493)
Q Consensus 141 ~~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 208 (493)
++|+++.+.. ++ ..+ ++++...+|+.........+...++|+|+||++|..++... .+...+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999886553 22 233 67889999999887777777778999999999998777543 22235789999
Q ss_pred EeeccccccccCCCHHHHHHHHH----hCCcCCceeeeeecccchHHHHHHHhcC-------CceEEeccccccccccce
Q 011100 209 LVLDEADRVLDVGFEEELRVVFQ----CLPKNRQTLLFSATMTSDLQTLLELSAN-------KAYFYEAYEGFKTVETLK 277 (493)
Q Consensus 209 vViDEah~~~~~~~~~~~~~i~~----~~~~~~~~i~~SAT~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 277 (493)
|||||+|.+.+..++..+...+. ..+...|++++|||+++. ..+...... .+..+. .........+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEE
Confidence 99999999998777766554443 334678999999999862 333322211 111111 11111100000
Q ss_pred EE-----EEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc------CCceeeccCCCCHHHHHHH
Q 011100 278 QQ-----YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL------DQEAVALHSFKSQSQRLSA 346 (493)
Q Consensus 278 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~ 346 (493)
.. ............+...+......+ +++||||||+..|+.++..|+.. +..+..+||+|++++|..+
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~-~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEH-RTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 00 000111111122333333333333 68999999999999999999873 4678999999999999999
Q ss_pred HHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCC-CCccEEEEEe
Q 011100 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG-RGGLAVSFVT 409 (493)
Q Consensus 347 ~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g-~~g~~~~~~~ 409 (493)
++.|++|++++||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++++..
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999864 4455555544
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-47 Score=404.42 Aligned_cols=336 Identities=21% Similarity=0.302 Sum_probs=261.4
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.|+++++++.+.+.+++.||..|+|+|.++++. +++|+|+++++|||||||++|.+|++..+... +.++|||+|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 578899999999999999999999999999986 88999999999999999999999999987653 568999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc
Q 011100 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~ 219 (493)
|+.|+++.+..+. .+++++..++|+...... ....++|+|+||+++..++... ...++++++||+||+|.+.+
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~---~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG---SSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC---chhhhcCCEEEEcCcCccCC
Confidence 9999999998764 468999999998765322 2357899999999998888755 23478999999999999998
Q ss_pred CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccce-----EEEEEecCCcc---hHH
Q 011100 220 VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLK-----QQYIFIPKNVK---DVY 291 (493)
Q Consensus 220 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~ 291 (493)
.+++..++.++..+....|++++|||+++ ...+..+..... +. ..... ..+. +.+........ ...
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~-~~---~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAEL-VV---SDWRP-VKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCcc-cc---CCCCC-CcceeeEecCCeeeccCcchhcchHH
Confidence 88999999999999889999999999986 344444332221 11 11111 1111 11111111111 111
Q ss_pred HHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc---------------------------------CCceeeccCCC
Q 011100 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL---------------------------------DQEAVALHSFK 338 (493)
Q Consensus 292 l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~ 338 (493)
....+...... .+++||||++++.|+.++..|... ...+.++||+|
T Consensus 227 ~~~~~~~~i~~-~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 227 WESLVYDAVKK-GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHh-CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 22222222222 368999999999998877666321 23588999999
Q ss_pred CHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE-------ecCCC-CCCcceeeccccccCC--CCccEEEEE
Q 011100 339 SQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN-------YDIPR-YPRDYVHRVGRTARAG--RGGLAVSFV 408 (493)
Q Consensus 339 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~-------~~~p~-s~~~y~qr~GR~gR~g--~~g~~~~~~ 408 (493)
++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 44443 3568999999999976 568999998
Q ss_pred eccc
Q 011100 409 TQND 412 (493)
Q Consensus 409 ~~~~ 412 (493)
..++
T Consensus 386 ~~~~ 389 (720)
T PRK00254 386 TTEE 389 (720)
T ss_pred cCcc
Confidence 7655
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.2e-46 Score=392.62 Aligned_cols=359 Identities=18% Similarity=0.180 Sum_probs=267.3
Q ss_pred HHHHHHH-HHcCCCCCcHHHHhhhhhhhcC------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 69 EWAVQTC-KELGMRRPTPVQTHCIPKILEG------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 69 ~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
..+.+.+ ..++|. ||++|.+||+.++++ +|.+++||||||||.+|+++++..+.. +.+++|++||++||
T Consensus 438 ~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA 513 (926)
T TIGR00580 438 LEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLA 513 (926)
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHH
Confidence 3444444 457885 999999999999875 789999999999999999999998876 67899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCHHHHHH---Hh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK---SL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 142 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
.|+++.+.+++..+++++..++|+....+... .+ .+.++|+|+||. ++.. ...+.++++|||||+|+
T Consensus 514 ~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~~----~v~f~~L~llVIDEahr- 584 (926)
T TIGR00580 514 QQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQK----DVKFKDLGLLIIDEEQR- 584 (926)
T ss_pred HHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----HhhC----CCCcccCCEEEeecccc-
Confidence 99999999999888999999998876544332 22 346899999984 2322 23578899999999998
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHH
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (493)
|+......+..++.+.|+++||||+.+...............+...... ...+...+. ... .......+..
T Consensus 585 ----fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~--~~~-~~~i~~~i~~ 655 (926)
T TIGR00580 585 ----FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVM--EYD-PELVREAIRR 655 (926)
T ss_pred ----cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEE--ecC-HHHHHHHHHH
Confidence 4455566677778889999999998776554444444444433322211 112222222 111 1111222333
Q ss_pred hhhhcCCCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCe
Q 011100 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375 (493)
Q Consensus 298 ~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 375 (493)
.+.. .++++|||++++.++.+++.|++. +..+..+||+|++.+|..++.+|++|+.+|||||+++++|||+|++++
T Consensus 656 el~~--g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 656 ELLR--GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANT 733 (926)
T ss_pred HHHc--CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCE
Confidence 3332 368999999999999999999985 678999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-CCCcceeeccccccCCCCccEEEEEecccH---HHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHHH
Q 011100 376 VLNYDIPR-YPRDYVHRVGRTARAGRGGLAVSFVTQNDV---DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVA 451 (493)
Q Consensus 376 Vi~~~~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (493)
||+++.|. +...|.||+||+||.|+.|.|++++...+. ...+. -..+...+........+
T Consensus 734 VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~R----------------L~~~~~~~~~g~gf~ia 797 (926)
T TIGR00580 734 IIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKR----------------LEAIQEFSELGAGFKIA 797 (926)
T ss_pred EEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHH----------------HHHHHHhhcchhhHHHH
Confidence 99999975 466899999999999999999999976531 11111 11223333344466777
Q ss_pred HHhhcccchHHHHHHH
Q 011100 452 TMKLMDDGFEEKAKER 467 (493)
Q Consensus 452 ~~~~~~~~~~~~~~~~ 467 (493)
..++..+|.|+..-.+
T Consensus 798 ~~Dl~~Rg~G~~lG~~ 813 (926)
T TIGR00580 798 LHDLEIRGAGNLLGEE 813 (926)
T ss_pred HHHHHhcCCcCCCCCc
Confidence 7777777766554333
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.4e-46 Score=380.70 Aligned_cols=319 Identities=18% Similarity=0.193 Sum_probs=243.2
Q ss_pred cCCCCCcHHHHhhhhhhhcCC-cEEEEccCCCCchhHhHHHHHHHhhcCCCCe-EEEEEcccHHHHHHHHHHHHHhccCC
Q 011100 78 LGMRRPTPVQTHCIPKILEGK-DVLGLAQTGSGKTAAFALPILHRLAEDPYGV-LALVITPTRELAYQLAEQFKALGSGL 155 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~-~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~~~~ 155 (493)
.||. |||||.++++.++.|+ ++++++|||||||.++.++++.. ......+ +.++++|||+|+.|+++.+.++++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 5888 9999999999999998 58888999999999776655533 2222233 44557799999999999999988754
Q ss_pred -----------------------CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCC-------------C
Q 011100 156 -----------------------HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD-------------I 199 (493)
Q Consensus 156 -----------------------~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-------------~ 199 (493)
++++..++||.....+...+..+++|||+|++ ++.+... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccccccccch
Confidence 48899999999999999988889999999954 4433211 0
Q ss_pred CCccCCcceEeeccccccccCCCHHHHHHHHHhC--Cc---CCceeeeeecccchHHHHHHHhcCCceEEeccccccccc
Q 011100 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL--PK---NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE 274 (493)
Q Consensus 200 ~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~--~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (493)
...+++++++|+|||| ++.+|...+..|+..+ +. ..|+++||||++.++..+.......+..+.+........
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 1136889999999999 6788999999999964 33 269999999999888877766665555554443333333
Q ss_pred cceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHH-----HHHHH
Q 011100 275 TLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRL-----SALHR 349 (493)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~ 349 (493)
.+.+ ++......+...+...+........+++||||||++.|+.++..|++.++ ..+||+|++.+|. .++++
T Consensus 244 ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 244 KIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred ceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 3343 33333332332333333222233347899999999999999999998876 8999999999999 78999
Q ss_pred hhc----CC-------CeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCc-cEEEEEec
Q 011100 350 FKS----GQ-------ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG-LAVSFVTQ 410 (493)
Q Consensus 350 f~~----g~-------~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g-~~~~~~~~ 410 (493)
|++ |. ..|||||+++++|||++. ++||++..| .++|+||+||+||.|..| ..++++..
T Consensus 321 Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 321 FLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 987 44 689999999999999976 899998877 689999999999999854 44555543
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-46 Score=369.59 Aligned_cols=329 Identities=22% Similarity=0.290 Sum_probs=256.6
Q ss_pred HHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 74 TCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 74 ~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
.|+. +|+..+++-|.++|..+++++|+++..|||+||++||++|++-. .+.+|||.|..+|+.++.+.+...
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred HHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHc-
Confidence 3443 79999999999999999999999999999999999999999876 336999999999999999999887
Q ss_pred cCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC--CHHHH
Q 011100 153 SGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG--FEEEL 226 (493)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~--~~~~~ 226 (493)
|+.+..+.+..+..+....+ .+..++++.+||++..--... ...-..+.++||||||++.+|| |++.+
T Consensus 81 ---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~---~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 81 ---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE---LLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred ---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH---HHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 68888888876655443322 355899999999975421111 0112456789999999999997 77777
Q ss_pred HHH---HHhCCcCCceeeeeecccchHHHHHHHh--cCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhh
Q 011100 227 RVV---FQCLPKNRQTLLFSATMTSDLQTLLELS--ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301 (493)
Q Consensus 227 ~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (493)
..+ ...++ +..++++|||.++.+..-+... ...+..+...- . .+ +..|...+.......+. ++.....
T Consensus 155 ~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--d-Rp--Ni~~~v~~~~~~~~q~~-fi~~~~~ 227 (590)
T COG0514 155 RRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--D-RP--NLALKVVEKGEPSDQLA-FLATVLP 227 (590)
T ss_pred HHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--C-Cc--hhhhhhhhcccHHHHHH-HHHhhcc
Confidence 665 34444 7889999999998766544333 33332221111 1 11 11222222221222222 3322223
Q ss_pred cCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC
Q 011100 302 MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI 381 (493)
Q Consensus 302 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 381 (493)
...+..||||.|++.++.+++.|...|+.+..||++|+.++|..+.++|..++.+|+|||.++++|||.|++++|||||+
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHH
Q 011100 382 PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAV 422 (493)
Q Consensus 382 p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 422 (493)
|.|.++|+|-+|||||+|.+..|++|+++.|..+.+.+.+.
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999998877776654
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.7e-46 Score=378.40 Aligned_cols=337 Identities=23% Similarity=0.333 Sum_probs=272.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-----CCCeEEEEEcccHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-----PYGVLALVITPTRELA 141 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~ 141 (493)
|++.+.+.++.. |.+|||.|.+|++.+.+|+|+++.||||||||+++.+|++..+... ..+..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999988 9999999999999999999999999999999999999999999876 2357899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC
Q 011100 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG 221 (493)
Q Consensus 142 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~ 221 (493)
+++.+.+..++..+|+.+..-+|++...+......+.|||+|+|||.|.-++... .+...|.++++|||||+|.+.+..
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999999999888888899999999999998877653 335668999999999999999887
Q ss_pred CHHHHHHHHHhCC---cCCceeeeeecccchHHHHHHHhcCC--ceEEeccccccccccceEEEEEecCC-----cchHH
Q 011100 222 FEEELRVVFQCLP---KNRQTLLFSATMTSDLQTLLELSANK--AYFYEAYEGFKTVETLKQQYIFIPKN-----VKDVY 291 (493)
Q Consensus 222 ~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 291 (493)
.+.++..-+.++. ...|.+++|||..+ .....++.... +..+..... .............. .....
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~---~k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA---AKKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc---CCcceEEEEecCCccccccchhHH
Confidence 7766544443322 28899999999985 34444433333 222211111 11111221111111 12223
Q ss_pred HHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC-CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCC
Q 011100 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD-QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370 (493)
Q Consensus 292 l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 370 (493)
+...+..+.... +.+|||+||+..++.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+++|||+.++-|||+
T Consensus 242 ~~~~i~~~v~~~-~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 242 LYERIAELVKKH-RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHHhhc-CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 344444444444 589999999999999999999987 889999999999999999999999999999999999999999
Q ss_pred CCcCeEEEecCCCCCCcceeeccccccC-CCCccEEEEEec
Q 011100 371 PTVDLVLNYDIPRYPRDYVHRVGRTARA-GRGGLAVSFVTQ 410 (493)
Q Consensus 371 ~~v~~Vi~~~~p~s~~~y~qr~GR~gR~-g~~g~~~~~~~~ 410 (493)
.+++.||+++.|++...++||+||+|+. |....++++...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999874 445666666655
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-45 Score=386.65 Aligned_cols=333 Identities=20% Similarity=0.270 Sum_probs=253.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
.|+++++++.+.+.+...+|. |+++|.++++.+.+++++++++|||||||+++.++++..+.. +.+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHH
Confidence 578899999999999999998 999999999999999999999999999999999999988876 5679999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC
Q 011100 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220 (493)
Q Consensus 141 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~ 220 (493)
|.|+++.+.++. ..|.++...+|+...... ....++|+|+||+++..++... ...++++++||+||+|++.+.
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~---~~~l~~v~lvViDEaH~l~d~ 150 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD---PYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC---hhHHhhcCEEEEecchhccCC
Confidence 999999998764 468889889988754322 2356899999999999888765 344789999999999999988
Q ss_pred CCHHHHHHHHHh---CCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEE-----Eec-CCcchHH
Q 011100 221 GFEEELRVVFQC---LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYI-----FIP-KNVKDVY 291 (493)
Q Consensus 221 ~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~ 291 (493)
+++..++.++.. ++.+.|++++|||+++. ..+..+..... +. .... +..+..... ... .......
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~-~~---~~~r-~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASL-IK---SNFR-PVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCc-cC---CCCC-CCCeEEEEEecCeeeeccccccccc
Confidence 888888777554 45678999999999863 44443332211 11 1111 111111110 011 1111112
Q ss_pred HHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC-------------------------CceeeccCCCCHHHHHHH
Q 011100 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD-------------------------QEAVALHSFKSQSQRLSA 346 (493)
Q Consensus 292 l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~-------------------------~~~~~~~~~~~~~~r~~~ 346 (493)
+..++...... .+++||||++++.++.++..|.+.. ..+..+||+|++++|..+
T Consensus 225 ~~~~i~~~~~~-~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 225 INSLIKETVND-GGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred HHHHHHHHHhC-CCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 33344433333 3789999999999999998886531 247789999999999999
Q ss_pred HHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC---------CCCCCcceeeccccccCCC--CccEEEEEeccc
Q 011100 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI---------PRYPRDYVHRVGRTARAGR--GGLAVSFVTQND 412 (493)
Q Consensus 347 ~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~---------p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~~ 412 (493)
++.|++|.++|||||+++++|+|+|+..+|| ++. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999865544 443 4456788999999999995 566777765443
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.2e-45 Score=394.01 Aligned_cols=360 Identities=17% Similarity=0.158 Sum_probs=271.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhhhhhhcC------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 69 EWAVQTCKELGMRRPTPVQTHCIPKILEG------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 69 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
.+..+....++| .||++|.+||+.++.+ +|++++|+||+|||.+|+.+++..+.. +.+++|++||++||.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQ 663 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 455566677888 5999999999999987 899999999999999999888877664 778999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 143 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
|+++.|..++..+++++..++|+.+..++...+ .+.++|+|+||+.+ .. ...+.++++|||||+|++
T Consensus 664 Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~----~v~~~~L~lLVIDEahrf- 734 (1147)
T PRK10689 664 QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS----DVKWKDLGLLIVDEEHRF- 734 (1147)
T ss_pred HHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC----CCCHhhCCEEEEechhhc-
Confidence 999999998888888999999988776655433 25789999999643 22 234678999999999996
Q ss_pred cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHh
Q 011100 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (493)
+ ......+..++.+.|+++||||+++....+......++..+...... ...+...+.... .......++..
T Consensus 735 --G--~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~---~~~~k~~il~e 805 (1147)
T PRK10689 735 --G--VRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYD---SLVVREAILRE 805 (1147)
T ss_pred --c--hhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecC---cHHHHHHHHHH
Confidence 2 23345567778899999999999877666665555555555432221 112332222211 11222334444
Q ss_pred hhhcCCCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeE
Q 011100 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376 (493)
Q Consensus 299 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V 376 (493)
+.. .++++||||+++.++.+++.|.+. +..+..+||+|++.+|..++.+|++|+++|||||+++++|||+|++++|
T Consensus 806 l~r--~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 806 ILR--GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred Hhc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 433 368999999999999999999987 6789999999999999999999999999999999999999999999999
Q ss_pred EEecCC-CCCCcceeeccccccCCCCccEEEEEecccH---HHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHHHH
Q 011100 377 LNYDIP-RYPRDYVHRVGRTARAGRGGLAVSFVTQNDV---DLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVAT 452 (493)
Q Consensus 377 i~~~~p-~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (493)
|..+.. .+...|+||+||+||.|+.|.|++++..... .....+ +.+..++.......++.
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl----------------~~~~~~~~lg~gf~~a~ 947 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL----------------EAIASLEDLGAGFALAT 947 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHH----------------HHHHHhcCCcchHHHHH
Confidence 954432 2345799999999999999999988865421 111111 12223333344777888
Q ss_pred HhhcccchHHHHHHHH
Q 011100 453 MKLMDDGFEEKAKERK 468 (493)
Q Consensus 453 ~~~~~~~~~~~~~~~~ 468 (493)
.++..+|+|+..-.++
T Consensus 948 ~dl~~rg~g~~~g~~q 963 (1147)
T PRK10689 948 HDLEIRGAGELLGEEQ 963 (1147)
T ss_pred HHHHhcCCccCCCCcc
Confidence 8888888886655444
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.1e-44 Score=377.63 Aligned_cols=315 Identities=21% Similarity=0.270 Sum_probs=239.4
Q ss_pred HHHHHHcCCCCCcHHHHhhhhhhhcC------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 72 VQTCKELGMRRPTPVQTHCIPKILEG------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 72 ~~~l~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
...+..++|. ||++|.++++.+..+ .+.+++||||||||++|++|++..+.. +.+++|++||++||.|++
T Consensus 252 ~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 252 KKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHY 327 (681)
T ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHH
Confidence 3344567885 999999999999886 479999999999999999999998876 778999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCCCHHHHHH---Hh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC
Q 011100 146 EQFKALGSGLHLRCEVVVGGMDLLTQAK---SL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG 221 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~ 221 (493)
+.+.+++..+++++..++|+........ .+ .+.++|+|+||+.+.. ...+.++++|||||+|++
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~v~~~~l~lvVIDE~Hrf---- 395 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD--------DVEFHNLGLVIIDEQHRF---- 395 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc--------cchhcccceEEEechhhh----
Confidence 9999999999999999999988644332 22 3469999999987642 123678899999999985
Q ss_pred CHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhh
Q 011100 222 FEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMED 301 (493)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (493)
+...+..+......+++++||||+.+....+..........+.... .....+... ....... ..+...+.....
T Consensus 396 -g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~~r~~i~~~--~~~~~~~-~~~~~~i~~~~~ 469 (681)
T PRK10917 396 -GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--PGRKPITTV--VIPDSRR-DEVYERIREEIA 469 (681)
T ss_pred -hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--CCCCCcEEE--EeCcccH-HHHHHHHHHHHH
Confidence 3444445555566789999999987654443332222222221111 111122222 2222222 333333333333
Q ss_pred cCCCeEEEEecchh--------hHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC
Q 011100 302 MGIRSAIIFVSTCR--------SCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP 371 (493)
Q Consensus 302 ~~~~~~lVf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 371 (493)
.+ ++++|||+.++ .++.+++.|... +..+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|
T Consensus 470 ~g-~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip 548 (681)
T PRK10917 470 KG-RQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVP 548 (681)
T ss_pred cC-CcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccC
Confidence 33 78999999643 456677777765 46899999999999999999999999999999999999999999
Q ss_pred CcCeEEEecCCCC-CCcceeeccccccCCCCccEEEEEe
Q 011100 372 TVDLVLNYDIPRY-PRDYVHRVGRTARAGRGGLAVSFVT 409 (493)
Q Consensus 372 ~v~~Vi~~~~p~s-~~~y~qr~GR~gR~g~~g~~~~~~~ 409 (493)
++++||+++.|.. ...|.||+||+||.|..|.|++++.
T Consensus 549 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 549 NATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999974 5677889999999999999999995
No 51
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-46 Score=321.85 Aligned_cols=330 Identities=31% Similarity=0.540 Sum_probs=285.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.-|.++-|.+++++++-..||..|+.+|.++||...-|.|++.+|..|-|||.+|++..++.+..-.....+|++|.||+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 45788889999999999999999999999999999999999999999999999999999999988777788999999999
Q ss_pred HHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 140 LAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
||-|+..+..++.+.+ ++++.+++||.........+.+-++|+|+|||++..+.++. ...+++++.+|+||+|.|+
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k---~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR---SLNLKNVKHFVLDECDKML 198 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc---cCchhhcceeehhhHHHHH
Confidence 9999998888877655 68999999999998888888889999999999999999877 5678999999999999887
Q ss_pred cC-CCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEecccc-ccccccceEEEEEecCCcchHHHHHHH
Q 011100 219 DV-GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEG-FKTVETLKQQYIFIPKNVKDVYLMHVL 296 (493)
Q Consensus 219 ~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (493)
++ +....+..|++..|...|++.||||+++++......++..|..+-+.+. ..+...+.++|+.+.+..+...+..++
T Consensus 199 e~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 199 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 54 6778899999999999999999999999999999888888765544443 345678889999998888999999988
Q ss_pred HhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeE
Q 011100 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376 (493)
Q Consensus 297 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V 376 (493)
..++. .+++||+.+.... + | +.+ +|||++++||+|+..++.|
T Consensus 279 d~LeF---NQVvIFvKsv~Rl---------------------~----------f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 279 DVLEF---NQVVIFVKSVQRL---------------------S----------F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhh---cceeEeeehhhhh---------------------h----------h---hhh-hHHhhhhccccCcccceee
Confidence 87775 5799999887650 0 2 223 8999999999999999999
Q ss_pred EEecCCCCCCcceeeccccccCCCCccEEEEEecc-cHHHHHHHHHHhcCccccc
Q 011100 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN-DVDLIHEIEAVVGKQLEEF 430 (493)
Q Consensus 377 i~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 430 (493)
+|||+|.+..+|+||+|||||.|.+|.++.|++.. +...+..+.......+.++
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eL 375 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKEL 375 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhc
Confidence 99999999999999999999999999999999765 5555666665554444443
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.5e-44 Score=371.64 Aligned_cols=318 Identities=20% Similarity=0.261 Sum_probs=235.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhhhhhhcC------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 69 EWAVQTCKELGMRRPTPVQTHCIPKILEG------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 69 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
..+.+.+..++| +||++|.+|++.++.+ .+.+++||||||||++|+++++..+.. +.+++|++||++||.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHH
Confidence 344566677899 5999999999999876 358999999999999999999998876 678999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCHHHHHH---Hh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAK---SL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 143 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
|+++.+.+++..+++++..++|+........ .+ .+.++|+|+||+.+... ..+.++++|||||+|++.
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEEEechhhcc
Confidence 9999999999988999999999987654322 22 35689999999876421 236788999999999853
Q ss_pred cCCCHHHHHHHHHhCCc---CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHH
Q 011100 219 DVGFEEELRVVFQCLPK---NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (493)
...+..+..... .+++++||||+.+....+..........+.... .....+... ....... ..+...
T Consensus 371 -----~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p--~~r~~i~~~--~~~~~~~-~~~~~~ 440 (630)
T TIGR00643 371 -----VEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELP--PGRKPITTV--LIKHDEK-DIVYEF 440 (630)
T ss_pred -----HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC--CCCCceEEE--EeCcchH-HHHHHH
Confidence 222222222222 688999999987644333221111111111111 001112222 2222222 333333
Q ss_pred HHhhhhcCCCeEEEEecch--------hhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCC
Q 011100 296 LSKMEDMGIRSAIIFVSTC--------RSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365 (493)
Q Consensus 296 ~~~~~~~~~~~~lVf~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 365 (493)
+......+ .+++|||+.+ ..++.+++.|.+. +..+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 441 i~~~l~~g-~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 441 IEEEIAKG-RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHhC-CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 33322233 6899999876 4566777777653 67899999999999999999999999999999999999
Q ss_pred CCCCCCCcCeEEEecCCC-CCCcceeeccccccCCCCccEEEEEe
Q 011100 366 RGLDIPTVDLVLNYDIPR-YPRDYVHRVGRTARAGRGGLAVSFVT 409 (493)
Q Consensus 366 ~Gidi~~v~~Vi~~~~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~ 409 (493)
+|+|+|++++||+++.|. +...|.||+||+||.|..|.|++++.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999997 45678889999999999999999994
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.1e-43 Score=380.22 Aligned_cols=323 Identities=22% Similarity=0.267 Sum_probs=233.6
Q ss_pred EEccCCCCchhHhHHHHHHHhhcCC----------CCeEEEEEcccHHHHHHHHHHHHHhc------------cCCCceE
Q 011100 102 GLAQTGSGKTAAFALPILHRLAEDP----------YGVLALVITPTRELAYQLAEQFKALG------------SGLHLRC 159 (493)
Q Consensus 102 v~a~TGsGKTl~~~l~~l~~l~~~~----------~~~~~lil~Pt~~L~~q~~~~~~~~~------------~~~~~~~ 159 (493)
|++|||||||++|.+|++..+.... .+.++|||+|+++|++|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999886532 35789999999999999999886521 1347899
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHH----HHHHHHhCCc
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE----LRVVFQCLPK 235 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~----~~~i~~~~~~ 235 (493)
...+|+....++...+.+.++|+|+||++|..++.+.. ...++++++|||||+|.+.+..++.. +..+...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 99999999888777777789999999999998876532 34589999999999999987655544 4555555667
Q ss_pred CCceeeeeecccchHHHHHHHhcC-CceEEeccccccccccceEEEEEecCCcc---------------------hHHHH
Q 011100 236 NRQTLLFSATMTSDLQTLLELSAN-KAYFYEAYEGFKTVETLKQQYIFIPKNVK---------------------DVYLM 293 (493)
Q Consensus 236 ~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~ 293 (493)
+.|+|++|||+++ .+.+...... .+..+.. ........+. .++......+ .....
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 8899999999987 4455444432 2332221 1111111222 1111111000 01111
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC---------------------------------CceeeccCCCCH
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD---------------------------------QEAVALHSFKSQ 340 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~ 340 (493)
.++..+.. .+++||||||+..|+.++..|++.. ..+..|||+|++
T Consensus 236 ~il~~i~~--~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 236 GILDEVLR--HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHHhc--CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 23332222 3689999999999999999997642 125689999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH-HHHH--
Q 011100 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV-DLIH-- 417 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~-~~~~-- 417 (493)
++|..+++.|++|++++||||+.+++|||++++++||+++.|.+..+|+||+||+||. ..|.+..++.+.+. +.+.
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~ 392 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSA 392 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999999999999996 33444333333332 2222
Q ss_pred -HHHHHhcCccccccc
Q 011100 418 -EIEAVVGKQLEEFEC 432 (493)
Q Consensus 418 -~~~~~~~~~~~~~~~ 432 (493)
-++..+...++....
T Consensus 393 ~~ve~~l~g~iE~~~~ 408 (1490)
T PRK09751 393 VIVECMFAGRLENLTP 408 (1490)
T ss_pred HHHHHHhcCCCCccCC
Confidence 255566666665443
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.1e-41 Score=364.03 Aligned_cols=289 Identities=22% Similarity=0.319 Sum_probs=222.5
Q ss_pred HHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 011100 72 VQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 72 ~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
.+.++. +|+ .|+++|..+++.++.|+|++++||||+|||. |.++++..+.. .+.+++||+||++|+.|+++.+..
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHH
Confidence 334444 477 7999999999999999999999999999996 45555554443 267899999999999999999999
Q ss_pred hccCCCceEEEEEcCCCH-----HHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc-----
Q 011100 151 LGSGLHLRCEVVVGGMDL-----LTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD----- 219 (493)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~-----~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~----- 219 (493)
++...++.+..+.|+... ......+. +.++|+|+||++|.+++.. .....++++|+||||++++
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhcccch
Confidence 998888888888877542 22222333 5689999999999988762 2245689999999999986
Q ss_pred ------CCCH-HHHHHHHHhCCc------------------------CCceeeeeecccch-HHHHHHHhcCCceEEecc
Q 011100 220 ------VGFE-EELRVVFQCLPK------------------------NRQTLLFSATMTSD-LQTLLELSANKAYFYEAY 267 (493)
Q Consensus 220 ------~~~~-~~~~~i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~ 267 (493)
.||. ..+..++..++. ..|++++|||+++. +... .......+.+.
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---HhhccceEEec
Confidence 5674 567777766654 68999999999864 3321 11222223333
Q ss_pred ccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhh---HHHHHHHHHhcCCceeeccCCCCHHHHH
Q 011100 268 EGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS---CHLLSLLLEELDQEAVALHSFKSQSQRL 344 (493)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 344 (493)
.......++.+.|+... .+...+..++..+ + .++||||++... ++.++..|+..|+.+..+||+| .
T Consensus 298 ~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l---~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE--DSVEKLVELVKRL---G-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred CcccccCCceEEEEEcc--cHHHHHHHHHHhc---C-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 33344566777776554 3555566666544 2 479999999887 9999999999999999999999 2
Q ss_pred HHHHHhhcCCCeEEEE----cCCCCCCCCCCC-cCeEEEecCCC
Q 011100 345 SALHRFKSGQATILLA----TDVASRGLDIPT-VDLVLNYDIPR 383 (493)
Q Consensus 345 ~~~~~f~~g~~~vlv~----T~~~~~Gidi~~-v~~Vi~~~~p~ 383 (493)
..+++|++|+++|||| |++++||||+|+ +++|||||+|.
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 3459999999999999 699999999999 89999999997
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-42 Score=328.72 Aligned_cols=340 Identities=23% Similarity=0.265 Sum_probs=275.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
...+++++++.+.+.|+..|++.+.|+|.-++.. +++|.|.+|.++|+||||++..++-+..+... +.+.|+++|..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPLV 271 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPLV 271 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehhH
Confidence 5678999999999999999999999999999987 88999999999999999999998888887765 66899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHH----HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccc
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK----SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEa 214 (493)
+||+|.++.|+.....+|+.+.+-.|......... .....+||||+|++-+..+++.+ ..+.++..|||||+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgdiGtVVIDEi 347 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGDIGTVVIDEI 347 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----CcccccceEEeeee
Confidence 99999999999999999999988888765544332 22346899999999999999876 34789999999999
Q ss_pred cccccCCCHHHHHHHH---HhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEec-CCcchH
Q 011100 215 DRVLDVGFEEELRVVF---QCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNVKDV 290 (493)
Q Consensus 215 h~~~~~~~~~~~~~i~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 290 (493)
|.+.+...+..+.-++ +.+-+..|++.+|||..+.. .++.....+...++ ..+..+..+.+++. ...+..
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y~-----~RPVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLVLYD-----ERPVPLERHLVFARNESEKWD 421 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeEeec-----CCCCChhHeeeeecCchHHHH
Confidence 9998876666655544 34446899999999998754 44444444443332 34455666666665 444555
Q ss_pred HHHHHHHhh-----hhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCC
Q 011100 291 YLMHVLSKM-----EDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365 (493)
Q Consensus 291 ~l~~~~~~~-----~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 365 (493)
.+..+.+.- ...-.+++|||++|+..|..++.+|...|+.+..||++|+-.+|..+...|.++++.++|+|-+++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 555555321 112247899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCeEEE----ecCCCCCCcceeeccccccCCC--CccEEEEEecc
Q 011100 366 RGLDIPTVDLVLN----YDIPRYPRDYVHRVGRTARAGR--GGLAVSFVTQN 411 (493)
Q Consensus 366 ~Gidi~~v~~Vi~----~~~p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~ 411 (493)
.|+|+|.-.+|+. -.-..|+.+|.||+|||||.+. .|.+++++.+.
T Consensus 502 AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 502 AGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999997665542 3344578999999999999884 58888888764
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.8e-41 Score=346.04 Aligned_cols=317 Identities=18% Similarity=0.154 Sum_probs=230.7
Q ss_pred HHHHhhhhhhhcCCcEEEEccCCCCchhH---------hHHHHHHHhh---cCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 85 PVQTHCIPKILEGKDVLGLAQTGSGKTAA---------FALPILHRLA---EDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 85 ~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~---------~~l~~l~~l~---~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
.+|.++++.++++++++++|+||||||.+ |+.+.+..+. ......+++|++||++||.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999987 3334444332 12235689999999999999999987755
Q ss_pred cC---CCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHH
Q 011100 153 SG---LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229 (493)
Q Consensus 153 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i 229 (493)
.. .+..+...+|+... ..........+|+|+|++.. ...++++++|||||||.+...+ ..+..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred CccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch--hHHHHH
Confidence 33 35678888999873 22222234679999997521 1237789999999999987654 455555
Q ss_pred HHhCC-cCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC---------cchHHHHHHHHhh
Q 011100 230 FQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN---------VKDVYLMHVLSKM 299 (493)
Q Consensus 230 ~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~ 299 (493)
+..+. ..+|+++||||++.+++.+...+ +.+..+.+.. .....+.+.|...... .....+...+...
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l~~~~-~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRIKEFF-PNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHHHHHh-cCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 54443 34699999999998887775444 4444444322 2234455555433211 0111122222222
Q ss_pred hhcCCCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHh-hcCCCeEEEEcCCCCCCCCCCCcCeE
Q 011100 300 EDMGIRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRF-KSGQATILLATDVASRGLDIPTVDLV 376 (493)
Q Consensus 300 ~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~T~~~~~Gidi~~v~~V 376 (493)
.....+++||||+++..++.+++.|.+. ++.+..+||+|++. +..+++| ++|+.+|||||+++++|||+|+|++|
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 2223368999999999999999999987 68999999999975 4666777 68999999999999999999999999
Q ss_pred EEec---CCC---------CCCcceeeccccccCCCCccEEEEEecccHHHHHHHH
Q 011100 377 LNYD---IPR---------YPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420 (493)
Q Consensus 377 i~~~---~p~---------s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 420 (493)
|++| .|. |.++|.||+||+||. .+|.|+.|+++++...+..+.
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 9998 554 667899999999999 889999999988765444443
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-40 Score=347.83 Aligned_cols=309 Identities=20% Similarity=0.252 Sum_probs=233.9
Q ss_pred HHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH-HhccCCCceEEEEEc
Q 011100 86 VQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK-ALGSGLHLRCEVVVG 164 (493)
Q Consensus 86 ~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~g 164 (493)
+-.+.+..+.++++++++|+||||||++|.+++++.... +.+++|+.|+|++|.|+++.+. .+....|..++..++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 344566677788999999999999999999999987643 5689999999999999999885 455555666665555
Q ss_pred CCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc-ccccCCCHHH-HHHHHHhCCcCCceeee
Q 011100 165 GMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD-RVLDVGFEEE-LRVVFQCLPKNRQTLLF 242 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~ 242 (493)
+.+ .....++|+|+|||+|..++... ..++++++|||||+| ++++.++... +..+...++.+.|+++|
T Consensus 83 ~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 83 GEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred ccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 432 23456899999999999988764 348899999999999 5777766543 34566667888999999
Q ss_pred eecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcch-HHHHHHHHhhhhcCCCeEEEEecchhhHHHHH
Q 011100 243 SATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD-VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLS 321 (493)
Q Consensus 243 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~ 321 (493)
|||++... +...+.+.+. +.... ....+.+.|.......+. ..+...+..+.....+++|||++++.+++.++
T Consensus 153 SATl~~~~--l~~~l~~~~v-I~~~g---r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 153 SATLDGER--LSSLLPDAPV-VESEG---RSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred eCCCCHHH--HHHHcCCCcE-EEecC---cceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 99998653 3333333333 22211 112244555444322221 11222222222223478999999999999999
Q ss_pred HHHHh---cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCC-------------
Q 011100 322 LLLEE---LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP------------- 385 (493)
Q Consensus 322 ~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~------------- 385 (493)
..|.+ .++.+..+||+|++++|..+++.|++|..+||||||++++|||+|+|++||++++|+..
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 306 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLET 306 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeE
Confidence 99987 36889999999999999999999999999999999999999999999999999998632
Q ss_pred -----CcceeeccccccCCCCccEEEEEecccHH
Q 011100 386 -----RDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 386 -----~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
.+|.||+||+||. .+|.||.+++.++..
T Consensus 307 ~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 307 VRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 2478999999998 899999999987654
No 58
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.8e-41 Score=347.35 Aligned_cols=335 Identities=21% Similarity=0.262 Sum_probs=257.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhhhhhh-cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKIL-EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 65 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
..+++.+.+.++..|+.++++.|+.++...+ +++|++|++|||||||+++++.+++.+... +.++++|||+++||.+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~E 91 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEE 91 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHH
Confidence 3477888888888999889999998887654 559999999999999999999999999885 5689999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH
Q 011100 144 LAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223 (493)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~ 223 (493)
.++.|+ ....+|+++...+|+...... ...+++|+|+||+++..++++... .+..+++|||||+|.+.+...+
T Consensus 92 k~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 92 KYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeeeeecCCcccC
Confidence 999999 556679999999999885442 236799999999999999988754 5789999999999999888788
Q ss_pred HHHHHHHHhCCc---CCceeeeeecccchHHHHHHHhcCCceEEe-ccccccccccceEEEEEecCCc------chHHHH
Q 011100 224 EELRVVFQCLPK---NRQTLLFSATMTSDLQTLLELSANKAYFYE-AYEGFKTVETLKQQYIFIPKNV------KDVYLM 293 (493)
Q Consensus 224 ~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ 293 (493)
+.++.+...+.. ..|++++|||+|+- ..+..+...+..... ............+.+....... ......
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 888888766553 47999999999973 333333322222111 0111122222333333333222 223334
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc-------------------------------------CCceeeccC
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL-------------------------------------DQEAVALHS 336 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~ 336 (493)
.++......+ +++||||++++.+...+..++.. ...++.||+
T Consensus 244 ~~v~~~~~~~-~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 244 ELVLESLAEG-GQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHhcC-CeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 4444444444 79999999999999999988731 123577999
Q ss_pred CCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----ec-----CCCCCCcceeeccccccCCC--CccEE
Q 011100 337 FKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----YD-----IPRYPRDYVHRVGRTARAGR--GGLAV 405 (493)
Q Consensus 337 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~-----~p~s~~~y~qr~GR~gR~g~--~g~~~ 405 (493)
+++.++|..+.+.|+.|.++||+||.+++.|+|+|.-.+||- |+ .+.+..+|+|++|||||.|- .|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 999999999999999999999999999999999997777663 56 44567899999999999985 46777
Q ss_pred EEEec
Q 011100 406 SFVTQ 410 (493)
Q Consensus 406 ~~~~~ 410 (493)
++.+.
T Consensus 403 i~~~~ 407 (766)
T COG1204 403 ILATS 407 (766)
T ss_pred EEecC
Confidence 77733
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.4e-40 Score=328.30 Aligned_cols=323 Identities=22% Similarity=0.207 Sum_probs=248.1
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+. |+++|..+++.++.|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++.+..++..+|+
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 5665 9999999999999998 999999999999999999988776 678999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCC----------------------CCCccCCcceEeeccc
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPD----------------------IPPVFSRTKFLVLDEA 214 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~----------------------~~~~l~~~~~vViDEa 214 (493)
++.+++|+.+.. .......++|+|+|...+ .+.|..... -......+.++||||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999997643 344456889999999876 333332211 0122456789999999
Q ss_pred cccc-cCC-----------------CHH--------------------------------HHHHHHHhCC----------
Q 011100 215 DRVL-DVG-----------------FEE--------------------------------ELRVVFQCLP---------- 234 (493)
Q Consensus 215 h~~~-~~~-----------------~~~--------------------------------~~~~i~~~~~---------- 234 (493)
|.++ |.. +.. .++.++..++
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 9754 200 000 0000000000
Q ss_pred --------------c-------------------------------------------------------------CCce
Q 011100 235 --------------K-------------------------------------------------------------NRQT 239 (493)
Q Consensus 235 --------------~-------------------------------------------------------------~~~~ 239 (493)
. ..++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 0 0257
Q ss_pred eeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHH
Q 011100 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319 (493)
Q Consensus 240 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~ 319 (493)
.+||||.+.....+...+.-.+..+..... ......+.++.+....+...+...+......+ .++||||+|+..++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~-~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQG-RPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcC-CCEEEEeCcHHHHHH
Confidence 899999998777788777766655443332 22223344555666666777777776654434 689999999999999
Q ss_pred HHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC---CcC-----eEEEecCCCCCCcceee
Q 011100 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP---TVD-----LVLNYDIPRYPRDYVHR 391 (493)
Q Consensus 320 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~---~v~-----~Vi~~~~p~s~~~y~qr 391 (493)
++..|.+.|+.+..+||.+. +|+..+..|+.+...|+||||+++||+||+ +|. +||+|++|.+...|.||
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr 566 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQL 566 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHh
Confidence 99999999999999999865 555556666666678999999999999999 666 99999999999999999
Q ss_pred ccccccCCCCccEEEEEecccH
Q 011100 392 VGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 392 ~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
+||+||.|.+|.+++|++.+|.
T Consensus 567 ~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 567 AGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cccccCCCCCeEEEEEechhHH
Confidence 9999999999999999998763
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.2e-40 Score=346.92 Aligned_cols=308 Identities=19% Similarity=0.262 Sum_probs=233.6
Q ss_pred HHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH-hccCCCceEEEEEcC
Q 011100 87 QTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA-LGSGLHLRCEVVVGG 165 (493)
Q Consensus 87 Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~ 165 (493)
-.+.+..+.++++++++|+||||||++|.+++++.... ..+++|++|||++|.|+++.+.. +....|..++..+++
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 34566677788999999999999999999999876433 34799999999999999999854 555567777777765
Q ss_pred CCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc-cccCCCH-HHHHHHHHhCCcCCceeeee
Q 011100 166 MDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR-VLDVGFE-EELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 166 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~i~~S 243 (493)
... ....++|+|+|||+|.+++... ..++++++|||||+|. .++.++. ..+..++..++++.|+++||
T Consensus 87 ~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 87 ESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred ccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 432 2345789999999999988764 3589999999999996 4554432 23345566677889999999
Q ss_pred ecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchH-HHHHHHHhhhhcCCCeEEEEecchhhHHHHHH
Q 011100 244 ATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV-YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSL 322 (493)
Q Consensus 244 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~ 322 (493)
||++.. .+...+.+.+.+ .... ....+.+.|...+...+.. .+...+..+.....+.+||||++..+++.+++
T Consensus 157 ATl~~~--~l~~~~~~~~~I-~~~g---r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 157 ATLDND--RLQQLLPDAPVI-VSEG---RSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred cCCCHH--HHHHhcCCCCEE-EecC---ccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHH
Confidence 999864 344443333332 2211 1123555555444332221 12223333333334789999999999999999
Q ss_pred HHHh---cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCC--------------
Q 011100 323 LLEE---LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYP-------------- 385 (493)
Q Consensus 323 ~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~-------------- 385 (493)
.|.+ .++.+..+||+|+..+|..++..|++|+.+||||||++++|||+|+|++||++++++..
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 46788999999999999999999999999999999999999999999999998887532
Q ss_pred ----CcceeeccccccCCCCccEEEEEecccHH
Q 011100 386 ----RDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 386 ----~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
.+|.||+||+||. .+|.||.++++.+..
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 4799999999998 699999999977643
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.7e-40 Score=363.80 Aligned_cols=330 Identities=20% Similarity=0.243 Sum_probs=251.5
Q ss_pred HHHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 011100 69 EWAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQ 147 (493)
Q Consensus 69 ~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 147 (493)
.++.+.+++ +|| +|+++|.++++.+++|+|+++.||||||||++++++++..... +.++|||+||++|+.|+++.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~---g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK---GKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc---CCeEEEEECHHHHHHHHHHH
Confidence 455566665 899 5999999999999999999999999999999766665544332 66899999999999999999
Q ss_pred HHHhccCC--CceEEEEEcCCCHHHHHH---Hh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc--
Q 011100 148 FKALGSGL--HLRCEVVVGGMDLLTQAK---SL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD-- 219 (493)
Q Consensus 148 ~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~-- 219 (493)
+..++..+ ++.+..++|+.+..++.. .+ .+.++|+|+||++|...+... . ..+++++||||||+|++
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECceeccccc
Confidence 99988765 467778889888765532 23 346999999999998776542 1 25789999999999986
Q ss_pred ---------CCCHHHHHH----HHH----------------------hCCcCCc-eeeeeecccchHHHHHHHhcCCceE
Q 011100 220 ---------VGFEEELRV----VFQ----------------------CLPKNRQ-TLLFSATMTSDLQTLLELSANKAYF 263 (493)
Q Consensus 220 ---------~~~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~ 263 (493)
.||...+.. ++. .++...| ++++|||++..... ...+ ..+..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~~l~-~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR-VKLY-RELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHH-HHHh-hcCeE
Confidence 477766653 321 2344555 57799999863111 1222 33444
Q ss_pred EeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhh---HHHHHHHHHhcCCceeeccCCCCH
Q 011100 264 YEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS---CHLLSLLLEELDQEAVALHSFKSQ 340 (493)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~ 340 (493)
+.+.........+.+.|+......+ ..+..++..+ + ..+||||++++. |+.++..|.+.|+.+..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g-~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---G-KGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---C-CCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 5554444556677777765543333 4555555543 3 578999999875 589999999999999999994
Q ss_pred HHHHHHHHHhhcCCCeEEEEc----CCCCCCCCCCC-cCeEEEecCCC---CCCcceeec-------------cccccCC
Q 011100 341 SQRLSALHRFKSGQATILLAT----DVASRGLDIPT-VDLVLNYDIPR---YPRDYVHRV-------------GRTARAG 399 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~~vlv~T----~~~~~Gidi~~-v~~Vi~~~~p~---s~~~y~qr~-------------GR~gR~g 399 (493)
|...+++|++|+++||||| ++++||||+|+ |++|||||+|+ +.+.|.|.. ||+||.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 888888876 9999999
Q ss_pred CCccEEEEEecccHHHHHHH
Q 011100 400 RGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 400 ~~g~~~~~~~~~~~~~~~~~ 419 (493)
.++.++..+...+...++.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHH
Confidence 98888766666665555443
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-39 Score=306.79 Aligned_cols=330 Identities=26% Similarity=0.280 Sum_probs=246.6
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
.-+++.||.......+.+ +.+++.|||.|||+++++.+...+...+ + ++|+++||+.|+.|.++.|.+...--.-.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 346899999998888776 8999999999999999999998888764 3 899999999999999999999875545577
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCce
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 239 (493)
+.++|......+.. .+...+|+|+||+.+.+-+..+ ..++.++.++|+||||+....--...+...+-.-..++.+
T Consensus 90 ~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~i 165 (542)
T COG1111 90 AALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLI 165 (542)
T ss_pred eeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceE
Confidence 88999887655444 4567899999999998877776 6678999999999999965443333333333333568889
Q ss_pred eeeeecccchHHHHHHHhcCCc---eEEeccccccc---cccceEEEEEec-----------------------------
Q 011100 240 LLFSATMTSDLQTLLELSANKA---YFYEAYEGFKT---VETLKQQYIFIP----------------------------- 284 (493)
Q Consensus 240 i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~----------------------------- 284 (493)
+++||||..+.+.+.....+-. ..+....+.+. .......++.++
T Consensus 166 lgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~ 245 (542)
T COG1111 166 LGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVI 245 (542)
T ss_pred EEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 9999999998888776654321 11111110000 001111111100
Q ss_pred ---C----------------------------------------------------------------------------
Q 011100 285 ---K---------------------------------------------------------------------------- 285 (493)
Q Consensus 285 ---~---------------------------------------------------------------------------- 285 (493)
.
T Consensus 246 ~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~ 325 (542)
T COG1111 246 ESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLL 325 (542)
T ss_pred eccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHh
Confidence 0
Q ss_pred ---------------------CcchHHHHHHHHh-hhhcCCCeEEEEecchhhHHHHHHHHHhcCCcee-e--------c
Q 011100 286 ---------------------NVKDVYLMHVLSK-MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV-A--------L 334 (493)
Q Consensus 286 ---------------------~~~~~~l~~~~~~-~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~-~--------~ 334 (493)
+.+...+..+++. +...+..++|||++.+++++.+..+|.+.+..+. . .
T Consensus 326 ~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~ 405 (542)
T COG1111 326 ADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREG 405 (542)
T ss_pred cChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccc
Confidence 0000001111111 1112226899999999999999999999987764 2 3
Q ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 335 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
..||++.++.++++.|++|+++|||||+++++|+|+|.+|.||.|++..|+..++||.||+||. ++|.++++++.++.+
T Consensus 406 ~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 406 DKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred ccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchH
Confidence 4679999999999999999999999999999999999999999999999999999999999996 899999999998655
Q ss_pred HHH
Q 011100 415 LIH 417 (493)
Q Consensus 415 ~~~ 417 (493)
...
T Consensus 485 eay 487 (542)
T COG1111 485 EAY 487 (542)
T ss_pred HHH
Confidence 443
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.8e-40 Score=331.07 Aligned_cols=310 Identities=15% Similarity=0.141 Sum_probs=222.1
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
...|+++|.++++.++.+++.++++|||+|||+++...+...+.. ...++|||+||++|+.||.+.+.+++......+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 357999999999999999999999999999999765433222222 234899999999999999999998864433445
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCce
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 239 (493)
..+.+|... ....+|+|+||+++..... ..++++++||+||||++... .+..++..++..+++
T Consensus 190 ~~i~~g~~~-------~~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~ 252 (501)
T PHA02558 190 HKIYSGTAK-------DTDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFK 252 (501)
T ss_pred eEEecCccc-------CCCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccch----hHHHHHHhhhccceE
Confidence 555565432 1357999999999865432 13678899999999998653 456666667667889
Q ss_pred eeeeecccchHHH---HHHHhcCCceEEeccccc--cccccceEEEEE-----------------------ecCCcchHH
Q 011100 240 LLFSATMTSDLQT---LLELSANKAYFYEAYEGF--KTVETLKQQYIF-----------------------IPKNVKDVY 291 (493)
Q Consensus 240 i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------------------~~~~~~~~~ 291 (493)
++||||+...... +...+......+...... ..........+. .....+...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 9999999753221 112222111111000000 000000000000 011112223
Q ss_pred HHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEc-CCCCCCCCC
Q 011100 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT-DVASRGLDI 370 (493)
Q Consensus 292 l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi 370 (493)
+..++..+...+ .+++|||+++++++.+++.|...+.++..+||+++.++|..+++.|++|+..||||| +++++|+|+
T Consensus 333 I~~~~~~~~~~~-~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di 411 (501)
T PHA02558 333 IANLALKLAKKG-ENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI 411 (501)
T ss_pred HHHHHHHHHhcC-CCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc
Confidence 334444444333 678999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred CCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEe
Q 011100 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409 (493)
Q Consensus 371 ~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~ 409 (493)
|++++||++.++.+...|+||+||++|.+..+....+++
T Consensus 412 p~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 412 KNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred ccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 999999999999999999999999999887655444443
No 64
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=303.70 Aligned_cols=280 Identities=29% Similarity=0.441 Sum_probs=220.3
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhcc---CCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGS---GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.+.++|+-|.++|++|.+..++++-. +-.++-..+.||.....+...+..+.+|+|+||+++.+.++.+ ...+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~l 361 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTL 361 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceee
Confidence 356799999999999999996666543 3345556788998888999999999999999999999999887 4567
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCC------cCCceeeeeecccc-hHHHHHHHhcCCceEEeccccccccccc
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLP------KNRQTLLFSATMTS-DLQTLLELSANKAYFYEAYEGFKTVETL 276 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (493)
..++++|+||++.++..++...+..+...+| ...|.+.+|||+.. ++..+.+..+..+..+........++..
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetv 441 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETV 441 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhh
Confidence 8899999999999999999999988888776 35689999999864 4555555555555555544443334433
Q ss_pred eEEEEEecCCcchH------------------------------HHHHH------HHhhhhcCCCeEEEEecchhhHHHH
Q 011100 277 KQQYIFIPKNVKDV------------------------------YLMHV------LSKMEDMGIRSAIIFVSTCRSCHLL 320 (493)
Q Consensus 277 ~~~~~~~~~~~~~~------------------------------~l~~~------~~~~~~~~~~~~lVf~~~~~~~~~l 320 (493)
.+....+....... ....+ +.........++||||.+...|+.+
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNL 521 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHH
Confidence 33332222111000 00001 1112222336899999999999999
Q ss_pred HHHHHhcC---CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeecccccc
Q 011100 321 SLLLEELD---QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTAR 397 (493)
Q Consensus 321 ~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR 397 (493)
.+++.+.| +.++++||+..+.+|...++.|+.++.+.|||||+++||+||.++-++||..+|.+...|+|||||+||
T Consensus 522 er~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 522 ERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred HHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccch
Confidence 99999886 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEe
Q 011100 398 AGRGGLAVSFVT 409 (493)
Q Consensus 398 ~g~~g~~~~~~~ 409 (493)
+.+-|.+|+++.
T Consensus 602 aermglaislva 613 (725)
T KOG0349|consen 602 AERMGLAISLVA 613 (725)
T ss_pred hhhcceeEEEee
Confidence 999999998874
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.6e-38 Score=343.63 Aligned_cols=293 Identities=23% Similarity=0.338 Sum_probs=218.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 011100 69 EWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 69 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
.++.+.+.......|+++|..+++.++.|+|++++||||||||+ |.+|++..+... +.+++||+||++||.|+++.+
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHH
Confidence 34555565544557999999999999999999999999999997 666776655443 678999999999999999999
Q ss_pred HHhccCCCceEE---EEEcCCCHHHHHH---Hh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc--
Q 011100 149 KALGSGLHLRCE---VVVGGMDLLTQAK---SL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD-- 219 (493)
Q Consensus 149 ~~~~~~~~~~~~---~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~-- 219 (493)
..++...++.+. .++|+.....+.. .+ .++++|+|+||++|...+.... ..++++|+||||+|++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~------~~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG------PKFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc------CCCCEEEEeChHhhhhcc
Confidence 999887776543 4678877655432 22 3469999999999988776531 1789999999999998
Q ss_pred ---------CCCHHH-HHHHH----------------------HhCCcCCc--eeeeeec-ccchHHHHHHHhcCCceEE
Q 011100 220 ---------VGFEEE-LRVVF----------------------QCLPKNRQ--TLLFSAT-MTSDLQTLLELSANKAYFY 264 (493)
Q Consensus 220 ---------~~~~~~-~~~i~----------------------~~~~~~~~--~i~~SAT-~~~~~~~~~~~~~~~~~~~ 264 (493)
.||... +..++ ..++...| ++++||| .|..+... .......+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAK---LFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHH---Hcccccce
Confidence 567653 44432 23444445 5678999 45443321 12222233
Q ss_pred eccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecch---hhHHHHHHHHHhcCCceeeccCCCCHH
Q 011100 265 EAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC---RSCHLLSLLLEELDQEAVALHSFKSQS 341 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~ 341 (493)
.+........++.+.|..... +...+..+++.+ + .++||||++. +.|+.++..|.+.|+.+..+||+++.
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---G-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc--HHHHHHHHHHHc---C-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 333333445566666654332 234455555543 3 5789999999 99999999999999999999999973
Q ss_pred HHHHHHHHhhcCCCeEEEE----cCCCCCCCCCCC-cCeEEEecCCC
Q 011100 342 QRLSALHRFKSGQATILLA----TDVASRGLDIPT-VDLVLNYDIPR 383 (493)
Q Consensus 342 ~r~~~~~~f~~g~~~vlv~----T~~~~~Gidi~~-v~~Vi~~~~p~ 383 (493)
.+++.|++|+++|||| |++++||||+|+ +++|||||+|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999998874
No 66
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.7e-40 Score=340.37 Aligned_cols=374 Identities=19% Similarity=0.250 Sum_probs=274.6
Q ss_pred HHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 011100 71 AVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 71 l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
.......+|...+++-|.++|..++.|+|++|.+|||+||++||++|++-. ++..|||.|..+|+..+...+..
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhh
Confidence 333445689999999999999999999999999999999999999999865 55799999999999887777644
Q ss_pred hccCCCceEEEEEcCCCHHHHHHHh----cC--CCcEEEECcchHHHHHhcCCCCCCccCC---cceEeeccccccccCC
Q 011100 151 LGSGLHLRCEVVVGGMDLLTQAKSL----MN--RPHVVIATPGRIKVLLEEDPDIPPVFSR---TKFLVLDEADRVLDVG 221 (493)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~~~~~~~~----~~--~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~---~~~vViDEah~~~~~~ 221 (493)
. ++....+.++....++...+ .+ ..+|++.||+++...-.-.. ....+.. +.++||||||++..|+
T Consensus 327 ~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~-~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 327 K----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLE-SLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred c----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhh-HHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3 78999999988875443222 23 57999999998754211100 0111223 7889999999999986
Q ss_pred --CHHHHHHH---HHhCCcCCceeeeeecccchHHHHHH--HhcCCceEEeccccccccccceEEEEEecCCcchHHHHH
Q 011100 222 --FEEELRVV---FQCLPKNRQTLLFSATMTSDLQTLLE--LSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH 294 (493)
Q Consensus 222 --~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (493)
|++.+..+ .... +...++++|||.+..+..-+- +.+..+..+. . ....-+-.|.+.+...+...+..
T Consensus 402 HdFRp~Yk~l~~l~~~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~--sfnR~NL~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRF-PGVPFIALTATATERVREDVIRSLGLRNPELFK---S--SFNRPNLKYEVSPKTDKDALLDI 475 (941)
T ss_pred ccccHHHHHHHHHHhhC-CCCCeEEeehhccHHHHHHHHHHhCCCCcceec---c--cCCCCCceEEEEeccCccchHHH
Confidence 55555543 3333 347899999999876654333 3333333221 1 11122233444444423332222
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
+...-.......+||||.++..|+.++..|+..++.+..||++|+..+|..+...|..++++|+|||-++++|||.|+|+
T Consensus 476 ~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 476 LEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred HHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCcee
Confidence 22222223346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccc----cchHHHHHHHHHHHHHHHH
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE----CKEQEVLSDITRVYKARRV 450 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 450 (493)
.||||.+|++.+.|+|-+|||||.|....|++|+...|...++.+...-........ .....+.....+....+|.
T Consensus 556 ~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~ 635 (941)
T KOG0351|consen 556 FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRK 635 (941)
T ss_pred EEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHH
Confidence 999999999999999999999999999999999999987766655443211111111 2233444555556677777
Q ss_pred HHHhhcccchH
Q 011100 451 ATMKLMDDGFE 461 (493)
Q Consensus 451 ~~~~~~~~~~~ 461 (493)
....++.+.|.
T Consensus 636 ~~l~~fge~f~ 646 (941)
T KOG0351|consen 636 QILEYFGEEFD 646 (941)
T ss_pred HHHHhcccccc
Confidence 77777766644
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-38 Score=326.24 Aligned_cols=324 Identities=20% Similarity=0.222 Sum_probs=240.6
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+ .|+++|..+...+.+|+ |+.+.||+|||+++++|++..... |..++|++||+.||.|.++.+..++..+|+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 577 59999999999888886 999999999999999999977666 678999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCC---CCCCccCCcceEeeccccccc-cCC-----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDP---DIPPVFSRTKFLVLDEADRVL-DVG----------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~---~~~~~l~~~~~vViDEah~~~-~~~----------- 221 (493)
+++++.|+.+...+.. ....++|+|+||+++ .+++.... .....+..+.++||||||.++ |..
T Consensus 149 ~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 149 TVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred eEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 9999999988333322 235689999999998 44443321 112346788999999999865 210
Q ss_pred ----CHHHHHHHHHhCCc--------------------------------------------------------------
Q 011100 222 ----FEEELRVVFQCLPK-------------------------------------------------------------- 235 (493)
Q Consensus 222 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 235 (493)
.......+...+..
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 00111111111100
Q ss_pred -------------------------------------------------------CCceeeeeecccchHHHHHHHhcCC
Q 011100 236 -------------------------------------------------------NRQTLLFSATMTSDLQTLLELSANK 260 (493)
Q Consensus 236 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 260 (493)
...+.+||+|....-..+...+.-.
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~ 387 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNME 387 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCc
Confidence 0145677777655444554444332
Q ss_pred ceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCH
Q 011100 261 AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340 (493)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 340 (493)
...+ ....+....-....+......+...+...+...... ..++||||+|++.++.++..|.+.++++..+||.+.+
T Consensus 388 v~~I--Pt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~-~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 388 VVQI--PTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHET-GRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred EEEC--CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhc-CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 2222 111111111112233344455566666666554333 4799999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCCCCCC---CCcC-----eEEEecCCCCCCcceeeccccccCCCCccEEEEEeccc
Q 011100 341 SQRLSALHRFKSGQATILLATDVASRGLDI---PTVD-----LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi---~~v~-----~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~ 412 (493)
.++..+...+..| +|+|||++++||+|+ ++|. +||+|++|.+...|.||+||+||.|.+|.++.|++.+|
T Consensus 465 ~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 465 KEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 8888777777666 799999999999999 6898 99999999999999999999999999999999999876
Q ss_pred H
Q 011100 413 V 413 (493)
Q Consensus 413 ~ 413 (493)
.
T Consensus 543 ~ 543 (790)
T PRK09200 543 D 543 (790)
T ss_pred H
Confidence 4
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.9e-39 Score=337.89 Aligned_cols=340 Identities=23% Similarity=0.288 Sum_probs=270.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 146 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 146 (493)
....+..++...|+..|+.+|.+|+..+.+|+|++|+.+||||||.+|++|+++.+..++.. ++|+|.||++|++++.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 44555778888999999999999999999999999999999999999999999999987755 78999999999999999
Q ss_pred HHHHhccCCC--ceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHH-HhcCCCCCCccCCcceEeeccccccccCCCH
Q 011100 147 QFKALGSGLH--LRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVL-LEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223 (493)
Q Consensus 147 ~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~-l~~~~~~~~~l~~~~~vViDEah~~~~~~~~ 223 (493)
.+.++...++ +.+...+|+...........+.++|+++||++|..+ +.....+...++++++||+||+|.+-.. |+
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~G 212 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QG 212 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-ch
Confidence 9999988877 888889999888777777789999999999999884 4444444556788999999999975433 55
Q ss_pred HHHHHHHH-------hCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEec---------CCc
Q 011100 224 EELRVVFQ-------CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP---------KNV 287 (493)
Q Consensus 224 ~~~~~i~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 287 (493)
..+..+++ ..+...|+++.|||+.+.-+.........-.. . ......+......+...+ ...
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~-~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s 290 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV-P-VDEDGSPRGLRYFVRREPPIRELAESIRRS 290 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee-e-ccCCCCCCCceEEEEeCCcchhhhhhcccc
Confidence 44444333 33457899999999988766666555433222 2 222233444444444444 223
Q ss_pred chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHH----HHHHhcC----CceeeccCCCCHHHHHHHHHHhhcCCCeEEE
Q 011100 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLS----LLLEELD----QEAVALHSFKSQSQRLSALHRFKSGQATILL 359 (493)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 359 (493)
....+..+...+...+ -++|+|+.++..++.+. ..+...+ ..+..+++++...+|..+...|+.|+..+++
T Consensus 291 ~~~~~~~~~~~~~~~~-~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 291 ALAELATLAALLVRNG-IQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred hHHHHHHHHHHHHHcC-ceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 3444455555555555 78999999999999986 4444444 5688899999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcCeEEEecCCC-CCCcceeeccccccCCCCccEEEEEecc
Q 011100 360 ATDVASRGLDIPTVDLVLNYDIPR-YPRDYVHRVGRTARAGRGGLAVSFVTQN 411 (493)
Q Consensus 360 ~T~~~~~Gidi~~v~~Vi~~~~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 411 (493)
+|++++-|+|+.+++.||.++.|. +..++.||.||+||.++.+..+.....+
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999 8899999999999999777776666533
No 69
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.9e-40 Score=299.08 Aligned_cols=335 Identities=19% Similarity=0.285 Sum_probs=247.4
Q ss_pred HHHHHHHHH-cCCCCC-cHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 69 EWAVQTCKE-LGMRRP-TPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 69 ~~l~~~l~~-~g~~~~-~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
..+.++|++ +|+..+ ++.|++|+..+..+ +|+.|++|||+||++||.+|.+.. +...||+.|..+|..++.
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHH
Confidence 345677775 687765 79999999987765 789999999999999999999876 668999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCCCHHHHHHHh------cCCCcEEEECcchH-----HHHHhcCCCCCCccCCcceEeeccc
Q 011100 146 EQFKALGSGLHLRCEVVVGGMDLLTQAKSL------MNRPHVVIATPGRI-----KVLLEEDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~vViDEa 214 (493)
+.+..+ .+++..+.+..+..++.+.+ .....+++.||+.. ..+|+.. ..-+.+.++|+|||
T Consensus 79 DHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L----~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 79 DHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL----ANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH----hhhceeeeEEechh
Confidence 999887 46676666666554444332 34578999999864 2333322 11245789999999
Q ss_pred cccccCC--CHHHHHHH--HHhCCcCCceeeeeecccchHHHHHH--HhcCCceEEeccccccccccceEEEEEe-cC--
Q 011100 215 DRVLDVG--FEEELRVV--FQCLPKNRQTLLFSATMTSDLQTLLE--LSANKAYFYEAYEGFKTVETLKQQYIFI-PK-- 285 (493)
Q Consensus 215 h~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 285 (493)
|++.+|| |.+++..+ ++..-.+...+++|||.+..++.-+- +.+..|+-+-....++ .++ +|... ..
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR--~NL--FYD~~~K~~I 226 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR--DNL--FYDNHMKSFI 226 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh--hhh--hHHHHHHHHh
Confidence 9999986 55555443 22223577799999999887765332 3333332211111100 000 00000 00
Q ss_pred CcchHHHHHHHHhhhh----------cCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCC
Q 011100 286 NVKDVYLMHVLSKMED----------MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355 (493)
Q Consensus 286 ~~~~~~l~~~~~~~~~----------~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 355 (493)
......|..+...... .-.+-.||||.|++.|++++-.|...|+++..||+++...+|..+.+.|.+++.
T Consensus 227 ~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~ 306 (641)
T KOG0352|consen 227 TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEI 306 (641)
T ss_pred hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCC
Confidence 0011122222211111 012568999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHH
Q 011100 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421 (493)
Q Consensus 356 ~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 421 (493)
.||+||..+++|+|-|+|++|||.++|.|+..|.|..||+||.|...+|-++|+.+|.+.++-+.+
T Consensus 307 PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 307 PVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999887766543
No 70
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=320.85 Aligned_cols=337 Identities=19% Similarity=0.255 Sum_probs=257.3
Q ss_pred cCCCCCcHHHHhhhhhhhc-CCcEEEEccCCCCchhHhHHHHHHHhhcC-------CCCeEEEEEcccHHHHHHHHHHHH
Q 011100 78 LGMRRPTPVQTHCIPKILE-GKDVLGLAQTGSGKTAAFALPILHRLAED-------PYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
++|..++.+|.+++|.+.. +.|.||+||||||||..|++.|++.+.++ ..+.++++|+|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 7899999999999998876 46899999999999999999999998752 347889999999999999999999
Q ss_pred HhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHH
Q 011100 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVV 229 (493)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i 229 (493)
+.+..+|+.|..++|+....... ...++|+|+|||++....++...-...++.+++|||||+|.+.+ ..++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHH
Confidence 99999999999999998765444 35789999999998776666554455678899999999996654 478888887
Q ss_pred HHhCC-------cCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcch---H----HHHHH
Q 011100 230 FQCLP-------KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD---V----YLMHV 295 (493)
Q Consensus 230 ~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~l~~~ 295 (493)
..+.. ...+++++|||+|+-..-..++..+.+.-+-..+..-.+..+.+.++..+..... . ....-
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 66543 4678999999999854444444444332222333334455667777666655111 1 11122
Q ss_pred HHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC-----------------------CceeeccCCCCHHHHHHHHHHhhc
Q 011100 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD-----------------------QEAVALHSFKSQSQRLSALHRFKS 352 (493)
Q Consensus 296 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~-----------------------~~~~~~~~~~~~~~r~~~~~~f~~ 352 (493)
+.++...+ .+++|||.++..+...|+.|.+.. .....+|++|...+|..+...|..
T Consensus 342 v~e~~~~g-~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~ 420 (1230)
T KOG0952|consen 342 VVEFLQEG-HQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE 420 (1230)
T ss_pred HHHHHHcC-CeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc
Confidence 22333334 799999999999988888887631 235679999999999999999999
Q ss_pred CCCeEEEEcCCCCCCCCCCCcCeEEE----ecCCC------CCCcceeeccccccCC--CCccEEEEEecccHHHHHHH
Q 011100 353 GQATILLATDVASRGLDIPTVDLVLN----YDIPR------YPRDYVHRVGRTARAG--RGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 353 g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~p~------s~~~y~qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~~ 419 (493)
|.++||+||..++.|+|+|+-.++|- ||.-. ...+.+|..|||||.+ ..|.++++.+.+..+.+..+
T Consensus 421 G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 421 GHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred CCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 99999999999999999987666664 33322 2346689999999976 45888888887766555443
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.4e-39 Score=315.33 Aligned_cols=302 Identities=20% Similarity=0.191 Sum_probs=208.8
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHH---------
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL--------- 169 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~--------- 169 (493)
++++.||||||||++|+++++..+... .+.+++|++|+++|+.|+++.+..++.. .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 589999999999999999999887543 3568999999999999999999998532 334444432210
Q ss_pred --HH-HHHh------cCCCcEEEECcchHHHHHhcC-CCCCCccC--CcceEeeccccccccCCCHHHHHHHHHhCC-cC
Q 011100 170 --TQ-AKSL------MNRPHVVIATPGRIKVLLEED-PDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLP-KN 236 (493)
Q Consensus 170 --~~-~~~~------~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~l~--~~~~vViDEah~~~~~~~~~~~~~i~~~~~-~~ 236 (493)
.. .... .-..+|+|+||+++...+... ......+. ..++||+||+|.+.+.++.. +..++..+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 00 0011 123679999999988776552 11011111 23789999999998765444 444444443 47
Q ss_pred CceeeeeecccchHHHHHHHhcCCceEEeccccccccc-cceEEEEEec--CCcchHHHHHHHHhhhhcCCCeEEEEecc
Q 011100 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVE-TLKQQYIFIP--KNVKDVYLMHVLSKMEDMGIRSAIIFVST 313 (493)
Q Consensus 237 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~lVf~~~ 313 (493)
.|+++||||+|..+..+.............. ..... ...+.+.... ...+...+..++..... .+++||||++
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~lVf~~t 231 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLD--LKEERRFERHRFIKIESDKVGEISSLERLLEFIKK--GGKIAIIVNT 231 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCC--CccccccccccceeeccccccCHHHHHHHHHHhhC--CCeEEEEECC
Confidence 8999999999977666654432221110000 00000 1122222221 12344455555543332 3699999999
Q ss_pred hhhHHHHHHHHHhcCC--ceeeccCCCCHHHHHHH----HHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCc
Q 011100 314 CRSCHLLSLLLEELDQ--EAVALHSFKSQSQRLSA----LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRD 387 (493)
Q Consensus 314 ~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~ 387 (493)
++.++.++..|++.+. .+..+||++++.+|... ++.|++|+.++||||+++++|+|++ +++||++..| +++
T Consensus 232 ~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~ 308 (358)
T TIGR01587 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDS 308 (358)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHH
Confidence 9999999999988765 48999999999999764 8899999999999999999999994 8999998877 789
Q ss_pred ceeeccccccCCCC----ccEEEEEeccc
Q 011100 388 YVHRVGRTARAGRG----GLAVSFVTQND 412 (493)
Q Consensus 388 y~qr~GR~gR~g~~----g~~~~~~~~~~ 412 (493)
|+||+||+||.|+. |.++++....+
T Consensus 309 ~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 309 LIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999998864 35666665443
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.3e-38 Score=323.31 Aligned_cols=324 Identities=18% Similarity=0.171 Sum_probs=231.2
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+ .|+++|......+ ++..++.++||+|||++|++|++..... +..++|++|+++||.|+++.+..++..+|+
T Consensus 67 lgl-rpydVQlig~l~l--~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVL--HQGNIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred cCC-CccHHHHHHHHHh--cCCceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 455 3555555444444 4447999999999999999999877665 556999999999999999999999999999
Q ss_pred eEEEEEcCCC---HHHHHHHhcCCCcEEEECcchH-HHHHhcC---CCCCCccCCcceEeeccccccccC-C--------
Q 011100 158 RCEVVVGGMD---LLTQAKSLMNRPHVVIATPGRI-KVLLEED---PDIPPVFSRTKFLVLDEADRVLDV-G-------- 221 (493)
Q Consensus 158 ~~~~~~g~~~---~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~---~~~~~~l~~~~~vViDEah~~~~~-~-------- 221 (493)
.+.+.+++.. ...........++|+|+||++| .+.+... ......+..+.++|+||||.++-. .
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 9998877621 2222333446799999999999 4444322 111234678899999999987521 0
Q ss_pred -------CHHHHHHHHHhCCc-----------------------------------------------------------
Q 011100 222 -------FEEELRVVFQCLPK----------------------------------------------------------- 235 (493)
Q Consensus 222 -------~~~~~~~i~~~~~~----------------------------------------------------------- 235 (493)
.......+...+..
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 00000011111100
Q ss_pred ----------------------------------------------------------CCceeeeeecccchHHHHHHHh
Q 011100 236 ----------------------------------------------------------NRQTLLFSATMTSDLQTLLELS 257 (493)
Q Consensus 236 ----------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~ 257 (493)
...+.+||+|.......+...+
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 0246777777665555555544
Q ss_pred cCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCC
Q 011100 258 ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSF 337 (493)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 337 (493)
.-....+ ....+....-....++.....+...+...+......+ .++||||++++.++.++..|.+.|+.+..+||.
T Consensus 381 ~l~v~~I--Pt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~-~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~ 457 (762)
T TIGR03714 381 SLSVVKI--PTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETG-QPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ 457 (762)
T ss_pred CCCEEEc--CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCC-CCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 3322222 1111111111222344445556666666665554444 799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC---------CcCeEEEecCCCCCCcceeeccccccCCCCccEEEEE
Q 011100 338 KSQSQRLSALHRFKSGQATILLATDVASRGLDIP---------TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408 (493)
Q Consensus 338 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~---------~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~ 408 (493)
+.+.++..+..+++.| .|+|||++++||+|++ ++.+|++|++|....+ .||+||+||.|.+|.++.|+
T Consensus 458 ~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~i 534 (762)
T TIGR03714 458 NAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFV 534 (762)
T ss_pred ChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEE
Confidence 9998888777777666 7999999999999999 9999999999988766 99999999999999999999
Q ss_pred ecccH
Q 011100 409 TQNDV 413 (493)
Q Consensus 409 ~~~~~ 413 (493)
+.+|.
T Consensus 535 s~eD~ 539 (762)
T TIGR03714 535 SLEDD 539 (762)
T ss_pred ccchh
Confidence 98764
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.7e-37 Score=313.12 Aligned_cols=324 Identities=20% Similarity=0.198 Sum_probs=244.6
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+. |+++|..+...+.+|+ |+.++||+|||+++.+|++..... +..++|++||+.||.|.++.+..++..+|+
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 5665 9999999998888876 999999999999999999644444 446999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCCC---CCccCCcceEeecccccccc-CCCH---------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDI---PPVFSRTKFLVLDEADRVLD-VGFE--------- 223 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~---~~~l~~~~~vViDEah~~~~-~~~~--------- 223 (493)
++.+++|+.+....... ..++|+|+||++| .+++...... ...+..+.++||||+|+++- ....
T Consensus 127 sv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 99999999886544443 3589999999999 8887655211 23568899999999998752 1000
Q ss_pred ------H--------------------------------HHHHHH------------------HhC------Cc------
Q 011100 224 ------E--------------------------------ELRVVF------------------QCL------PK------ 235 (493)
Q Consensus 224 ------~--------------------------------~~~~i~------------------~~~------~~------ 235 (493)
. .++.++ ..+ ..
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0 000000 000 00
Q ss_pred -------------------------------------------------------CCceeeeeecccchHHHHHHHhcCC
Q 011100 236 -------------------------------------------------------NRQTLLFSATMTSDLQTLLELSANK 260 (493)
Q Consensus 236 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 260 (493)
...+.+||+|.......+...+.-.
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 364 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE 364 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC
Confidence 0246788888776666666665544
Q ss_pred ceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCH
Q 011100 261 AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340 (493)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 340 (493)
...+.......... ....++.....+...+...+......+ .++||||+++..++.++..|.+.|+.+..+|+. +
T Consensus 365 vv~IPtnkp~~R~d--~~d~i~~t~~~k~~ai~~~i~~~~~~g-rpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 365 VVVVPTNRPVIRKD--LSDLVYKTEEEKWKAVVDEIKERHAKG-QPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred EEEeCCCCCeeeee--CCCeEEcCHHHHHHHHHHHHHHHHhcC-CCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 33332111111111 112222333334444545454444444 899999999999999999999999999999997 8
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCC-------cCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 341 SQRLSALHRFKSGQATILLATDVASRGLDIPT-------VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~-------v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++.+|.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 89999999999999999999999999999998 55999999999999999999999999999999999998874
Q ss_pred H
Q 011100 414 D 414 (493)
Q Consensus 414 ~ 414 (493)
-
T Consensus 520 l 520 (745)
T TIGR00963 520 L 520 (745)
T ss_pred H
Confidence 3
No 74
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=284.03 Aligned_cols=383 Identities=20% Similarity=0.259 Sum_probs=275.1
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 63 AGLGLAEWAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 63 ~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
++++-+.+..+.|+. +....++|.|.++|+..+.|.+.++..|||.||++||.+|++.. ...+||+||..+|+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislm 147 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLM 147 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHH
Confidence 344555666666664 78899999999999999999999999999999999999999876 66799999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCHHHH---HHHh---cCCCcEEEECcchHHHHH--hcCCCCCCccCCcceEeecc
Q 011100 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQ---AKSL---MNRPHVVIATPGRIKVLL--EEDPDIPPVFSRTKFLVLDE 213 (493)
Q Consensus 142 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~---~~~~~Iiv~Tp~~l~~~l--~~~~~~~~~l~~~~~vViDE 213 (493)
.++.-.++.+ |+....+....+..+. ...+ .....+++.||+++...- .+..........+.++.+||
T Consensus 148 edqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 148 EDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 9988888887 5666555555443221 1112 234679999999874321 11100022245678999999
Q ss_pred ccccccCC--CHHHHH--HHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcch
Q 011100 214 ADRVLDVG--FEEELR--VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289 (493)
Q Consensus 214 ah~~~~~~--~~~~~~--~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (493)
+|++..|| |++.+. .++.+--++..++++|||.++.+..-....+.-...+.....+ ...++...+..-|. ...
T Consensus 224 vhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f-nr~nl~yev~qkp~-n~d 301 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF-NRPNLKYEVRQKPG-NED 301 (695)
T ss_pred eeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc-CCCCceeEeeeCCC-ChH
Confidence 99999886 444332 3444444688899999999875544333222111111111111 12233333333332 334
Q ss_pred HHHHHHHHhhh-hcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCC
Q 011100 290 VYLMHVLSKME-DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGL 368 (493)
Q Consensus 290 ~~l~~~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 368 (493)
..+..+.+.+. +..+...||||-+++.|+.++..|+..|+.+..+|+.|.+.+|..+-..|..|+++|+|+|-++++||
T Consensus 302 d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgi 381 (695)
T KOG0353|consen 302 DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGI 381 (695)
T ss_pred HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccC
Confidence 44444444332 22235689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCeEEEecCCCCCCccee-------------------------------------------eccccccCCCCccEE
Q 011100 369 DIPTVDLVLNYDIPRYPRDYVH-------------------------------------------RVGRTARAGRGGLAV 405 (493)
Q Consensus 369 di~~v~~Vi~~~~p~s~~~y~q-------------------------------------------r~GR~gR~g~~g~~~ 405 (493)
|-|+|++|||..+|+|++.|.| ..||+||.+.+..|+
T Consensus 382 dkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ci 461 (695)
T KOG0353|consen 382 DKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCI 461 (695)
T ss_pred CCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEE
Confidence 9999999999999999999999 789999999999999
Q ss_pred EEEecccHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHHHHHhhcccchH
Q 011100 406 SFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGFE 461 (493)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (493)
++|.-.|...+......-..-+. ..-++.........++|.....++++.+.
T Consensus 462 lyy~~~difk~ssmv~~e~~g~q----~ly~mv~y~~d~s~crrv~laehfde~w~ 513 (695)
T KOG0353|consen 462 LYYGFADIFKISSMVQMENTGIQ----KLYEMVRYAADISKCRRVKLAEHFDEAWE 513 (695)
T ss_pred EEechHHHHhHHHHHHHHhhhHH----HHHHHHHHHhhhHHHHHHHHHHHHHhhcC
Confidence 99998887666554432221111 22344455566677888877777765554
No 75
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=306.18 Aligned_cols=371 Identities=17% Similarity=0.232 Sum_probs=284.8
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
++|. |-.+|++||-++..|.+++|.|+|.+|||+++..++...-.. +.+++|..|-++|.+|-++.|+.-+...|
T Consensus 294 ~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHHhccccc-
Confidence 5665 889999999999999999999999999999988877665544 77899999999999999999999876544
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
.++|+.. +.+...++|+|.+.|..++.++.+ .++++.+||+||+|.+.|...+..|+.++-.+|.+.
T Consensus 369 ---LlTGDvq-------inPeAsCLIMTTEILRsMLYrgad---liRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 369 ---LLTGDVQ-------INPEASCLIMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred ---eeeccee-------eCCCcceEeehHHHHHHHHhcccc---hhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 7888765 356789999999999999998855 478899999999999999999999999999999999
Q ss_pred ceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEec---------------------------------
Q 011100 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP--------------------------------- 284 (493)
Q Consensus 238 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 284 (493)
++|++|||.|+..+..-|....+...+.+......+..+.+.+..-.
T Consensus 436 ~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 436 NFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred eEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 99999999999776655554333222222222222222222111100
Q ss_pred ------------------------------CCcch--HHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCC---
Q 011100 285 ------------------------------KNVKD--VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ--- 329 (493)
Q Consensus 285 ------------------------------~~~~~--~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~--- 329 (493)
...+. .....++..+.....-|+||||-+++.|+..+++|...+.
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 00011 2466677777777777899999999999999999976422
Q ss_pred ------------------------------------ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc
Q 011100 330 ------------------------------------EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTV 373 (493)
Q Consensus 330 ------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 373 (493)
.++++||++-+--++-+.-.|..|-++||+||.++++|+|+|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 36789999999999999999999999999999999999999977
Q ss_pred CeEEEec--------CCCCCCcceeeccccccCCC--CccEEEEEecccHHHHHHHHHHhcCcccccccchHHHHHHHHH
Q 011100 374 DLVLNYD--------IPRYPRDYVHRVGRTARAGR--GGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITR 443 (493)
Q Consensus 374 ~~Vi~~~--------~p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (493)
.+|+.-- .-..+-+|.|++|||||.|- .|+++++.... ......+.+...-..........--+..+.+
T Consensus 676 tvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li~G~~~~L~SQFRlTY~MILn 754 (1248)
T KOG0947|consen 676 TVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLIMGGPTRLESQFRLTYGMILN 754 (1248)
T ss_pred eEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHhcCCCchhhhhhhhHHHHHHH
Confidence 7776421 11347899999999999995 57777666554 3444555554444444444444555666777
Q ss_pred HHHHHHHHHHhhcccchHHHHHHH
Q 011100 444 VYKARRVATMKLMDDGFEEKAKER 467 (493)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (493)
..+...+...+++.+.|++...++
T Consensus 755 LLRve~lrvEdm~krSf~E~~s~~ 778 (1248)
T KOG0947|consen 755 LLRVEALRVEDMMKRSFSEFVSQR 778 (1248)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 778888888999999999987765
No 76
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.8e-36 Score=324.83 Aligned_cols=327 Identities=25% Similarity=0.286 Sum_probs=238.8
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
.-++++||.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+..++...+..+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 89 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKI 89 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceE
Confidence 346899999999988887 89999999999999999988887742 356899999999999999999998875445578
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCce
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 239 (493)
..++|+...... .......+|+|+||+.+...+... ...+.++++|||||||++.+......+...+......+++
T Consensus 90 ~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 90 VVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred EEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 888888776543 334467899999999988766554 3457889999999999987654444444444444556789
Q ss_pred eeeeecccchHHHHHHHhcC---CceEEec----------------------cccc-----------------------c
Q 011100 240 LLFSATMTSDLQTLLELSAN---KAYFYEA----------------------YEGF-----------------------K 271 (493)
Q Consensus 240 i~~SAT~~~~~~~~~~~~~~---~~~~~~~----------------------~~~~-----------------------~ 271 (493)
++||||+......+.....+ ....+.. .... .
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999985433322221111 0000000 0000 0
Q ss_pred -ccc-------------cceEEEE--------------------------------------------------------
Q 011100 272 -TVE-------------TLKQQYI-------------------------------------------------------- 281 (493)
Q Consensus 272 -~~~-------------~~~~~~~-------------------------------------------------------- 281 (493)
... .+.....
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 000 0000000
Q ss_pred ----------------EecCCcchHHHHHHHHhhh-hcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCC-------
Q 011100 282 ----------------FIPKNVKDVYLMHVLSKME-DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSF------- 337 (493)
Q Consensus 282 ----------------~~~~~~~~~~l~~~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~------- 337 (493)
......+...+..++.... ..+..++||||+++++|+.+...|...++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 0000112222333333322 1345799999999999999999999999998888876
Q ss_pred -CCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 338 -KSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 338 -~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
|++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.+++++..+..+
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~e 482 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTRD 482 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCChH
Confidence 999999999999999999999999999999999999999999999999999999999999865 8888888876543
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-36 Score=294.80 Aligned_cols=295 Identities=18% Similarity=0.201 Sum_probs=204.2
Q ss_pred HHHhhhhhhhcCCc--EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCC----CceE
Q 011100 86 VQTHCIPKILEGKD--VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL----HLRC 159 (493)
Q Consensus 86 ~Q~~~i~~i~~~~~--~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~ 159 (493)
+|.++++.+.++.+ +++++|||||||++|++|++.. ..++++++|+++|++|+++.+..++..+ +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999999875 7889999999999999998853 4468999999999999999998887432 4566
Q ss_pred EEEEcCCCHH--H------------------HHHHhcCCCcEEEECcchHHHHHhcCCC-----CCCccCCcceEeeccc
Q 011100 160 EVVVGGMDLL--T------------------QAKSLMNRPHVVIATPGRIKVLLEEDPD-----IPPVFSRTKFLVLDEA 214 (493)
Q Consensus 160 ~~~~g~~~~~--~------------------~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-----~~~~l~~~~~vViDEa 214 (493)
..+.|..... . +.......++|+++||+.+..++..... ....+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652111 0 0011124688999999999876653211 1123578999999999
Q ss_pred cccccCCCH-----HHHHHHHHhCCcCCceeeeeecccchHHHHHHHh--cCCceEEeccc-----------------cc
Q 011100 215 DRVLDVGFE-----EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS--ANKAYFYEAYE-----------------GF 270 (493)
Q Consensus 215 h~~~~~~~~-----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-----------------~~ 270 (493)
|.+...... .....++.......+++++|||+++.+...+... ...+....... .+
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 987643321 2233334433445799999999998766665543 22221111111 00
Q ss_pred c-ccccceEEEEEecCCcchHHHHHHHHhh----hhcCCCeEEEEecchhhHHHHHHHHHhcC--CceeeccCCCCHHHH
Q 011100 271 K-TVETLKQQYIFIPKNVKDVYLMHVLSKM----EDMGIRSAIIFVSTCRSCHLLSLLLEELD--QEAVALHSFKSQSQR 343 (493)
Q Consensus 271 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~lVf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r 343 (493)
. ....+.+.+.. ....+...+..++... .....+++||||+++..++.++..|++.+ ..+..+||.+++.+|
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 0 01234444433 3334444444443333 22234689999999999999999999864 567889999999988
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccc
Q 011100 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTA 396 (493)
Q Consensus 344 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~g 396 (493)
... ++..|||||+++++|||++.+ +|| ++ |.+.+.|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 654 478999999999999999876 566 45 889999999999997
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7.1e-36 Score=293.06 Aligned_cols=321 Identities=20% Similarity=0.272 Sum_probs=250.4
Q ss_pred CHHHH-HHHHHcCCCCCcHHHHhhhhhhhcC------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 68 AEWAV-QTCKELGMRRPTPVQTHCIPKILEG------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 68 ~~~l~-~~l~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
...+. +.+..++|. ||..|++++..|... .+-+++|..|||||+++++.++..+.. |.++.+++||..|
T Consensus 248 ~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAPTEIL 323 (677)
T COG1200 248 NGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAPTEIL 323 (677)
T ss_pred cHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEeccHHHH
Confidence 33444 445678887 999999999999864 457999999999999999999999888 8899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc
Q 011100 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 141 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~ 216 (493)
|.|.++.+.++++.+|+++..++|..........+ .+..+|+|+| +.++... ..+.++.+||+||-|+
T Consensus 324 A~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT----HALiQd~----V~F~~LgLVIiDEQHR 395 (677)
T COG1200 324 AEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT----HALIQDK----VEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc----chhhhcc----eeecceeEEEEecccc
Confidence 99999999999999999999999987654443322 4569999999 4455443 4478899999999999
Q ss_pred cccCCCHHHHHHHHHhCCc-CCceeeeeecccchHHHHHHHhcCCceEEecccccccccc-ceEEEEEecCCcchHHHHH
Q 011100 217 VLDVGFEEELRVVFQCLPK-NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVET-LKQQYIFIPKNVKDVYLMH 294 (493)
Q Consensus 217 ~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 294 (493)
|+-..+..+..... .++++.|||||.+..-.+.....-+...+. ..+.. ......+++.......+..
T Consensus 396 -----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id-----ElP~GRkpI~T~~i~~~~~~~v~e~ 465 (677)
T COG1200 396 -----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID-----ELPPGRKPITTVVIPHERRPEVYER 465 (677)
T ss_pred -----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc-----cCCCCCCceEEEEeccccHHHHHHH
Confidence 88888888888877 799999999998765555443322222221 11111 2223344555555555555
Q ss_pred HHHhhhhcCCCeEEEEecchhh--------HHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRS--------CHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~--------~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 364 (493)
+...+. .+ +++.+.|+-+++ +..++..|+.. +..+..+||.|+..++..++.+|++|+++|||||.++
T Consensus 466 i~~ei~-~G-rQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 466 IREEIA-KG-RQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHH-cC-CEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 555554 34 799999987764 44556666644 4568999999999999999999999999999999999
Q ss_pred CCCCCCCCcCeEEEecCCCCC-CcceeeccccccCCCCccEEEEEeccc
Q 011100 365 SRGLDIPTVDLVLNYDIPRYP-RDYVHRVGRTARAGRGGLAVSFVTQND 412 (493)
Q Consensus 365 ~~Gidi~~v~~Vi~~~~p~s~-~~y~qr~GR~gR~g~~g~~~~~~~~~~ 412 (493)
+.|||+|+.+++|..+.-+-- ...-|.-||+||.+..+.|++++.+..
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999998887654 455566699999999999999998776
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=7.5e-36 Score=297.20 Aligned_cols=328 Identities=24% Similarity=0.265 Sum_probs=233.1
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCce
Q 011100 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLR 158 (493)
Q Consensus 79 g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 158 (493)
..-.++.||.+.+...+ |+++||++|||+|||.+++..++.++...+. .++++++|++.|+.|+...+..++.. ..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--cc
Confidence 44569999999999999 9999999999999999999999998887764 68999999999999999777777654 45
Q ss_pred EEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC-CCHHHHHHHHHhCCcCC
Q 011100 159 CEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCLPKNR 237 (493)
Q Consensus 159 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~ 237 (493)
+....||.........+....+|+|+||+.+.+.+.++... .++.+.++||||||+.... .+...++..+..-....
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc--ccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 55566664433334455678899999999999988776432 2788999999999997644 45555556666555566
Q ss_pred ceeeeeecccchHHHHHHHhcCCceEEecccc-------------------c---------------------------c
Q 011100 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEG-------------------F---------------------------K 271 (493)
Q Consensus 238 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-------------------~---------------------------~ 271 (493)
|++++|||+..+.+.......+--....+... . .
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 99999999997666554432210000000000 0 0
Q ss_pred ccccceEEEEE------------ecCCcc---------------------------------------------------
Q 011100 272 TVETLKQQYIF------------IPKNVK--------------------------------------------------- 288 (493)
Q Consensus 272 ~~~~~~~~~~~------------~~~~~~--------------------------------------------------- 288 (493)
........|.. .+...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 00000000000 000000
Q ss_pred ------------------------hHHHHH-HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc---CCceee-------
Q 011100 289 ------------------------DVYLMH-VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL---DQEAVA------- 333 (493)
Q Consensus 289 ------------------------~~~l~~-~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~~------- 333 (493)
...+.. +..........++||||.++..|+.+..+|.+. ++....
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 000000 001111122267999999999999999999842 222222
Q ss_pred -ccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEeccc
Q 011100 334 -LHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412 (493)
Q Consensus 334 -~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~ 412 (493)
-..+|++.++..+++.|++|+++|||||+++++|+|++.|++||.||.-.++...+||.|| ||+ +.|.|+++++..+
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 2357999999999999999999999999999999999999999999999999999999999 997 6799998888544
Q ss_pred HH
Q 011100 413 VD 414 (493)
Q Consensus 413 ~~ 414 (493)
..
T Consensus 531 ~~ 532 (746)
T KOG0354|consen 531 VI 532 (746)
T ss_pred HH
Confidence 33
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-35 Score=300.13 Aligned_cols=312 Identities=17% Similarity=0.187 Sum_probs=211.6
Q ss_pred CCCcHHHHhhhhhhhc-C--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 81 RRPTPVQTHCIPKILE-G--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~-~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
..++|||.+++..+.. + +..++++|||+|||++.+..+.. + +.++|||||+..|+.||.+.|..++.....
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 3589999999998874 3 46899999999999997765443 2 346999999999999999999998644345
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC---CCcc--CCcceEeeccccccccCCCHHHHHHHHHh
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI---PPVF--SRTKFLVLDEADRVLDVGFEEELRVVFQC 232 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~l--~~~~~vViDEah~~~~~~~~~~~~~i~~~ 232 (493)
.+..++|+... .......|+|+|++.+.....+.... ...+ ..+++||+||||++.. ..+..++..
T Consensus 328 ~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~ 398 (732)
T TIGR00603 328 QICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTI 398 (732)
T ss_pred eEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHh
Confidence 66667765432 11234789999998765322111000 0112 4578999999999854 445555555
Q ss_pred CCcCCceeeeeecccchHH---HHHHHhcCCceEEeccccc--cccccceEEEEEec-----------------------
Q 011100 233 LPKNRQTLLFSATMTSDLQ---TLLELSANKAYFYEAYEGF--KTVETLKQQYIFIP----------------------- 284 (493)
Q Consensus 233 ~~~~~~~i~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------- 284 (493)
+. ....+++||||...-. .+..+.....+......-. .-.......-+.++
T Consensus 399 l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 399 VQ-AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred cC-cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 53 3457999999964211 1222221111111110000 00011111111111
Q ss_pred CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC-CCeEEEEcCC
Q 011100 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG-QATILLATDV 363 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~ 363 (493)
...+...+..++..... ...++||||.+...++.++..|. +..+||+++..+|..+++.|+.| .+++||+|++
T Consensus 478 np~K~~~~~~Li~~he~-~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkV 551 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQ-RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKV 551 (732)
T ss_pred ChHHHHHHHHHHHHHhh-cCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecc
Confidence 11122223334443332 34799999999999998888772 56789999999999999999975 8899999999
Q ss_pred CCCCCCCCCcCeEEEecCC-CCCCcceeeccccccCCCCccE-------EEEEecccHH
Q 011100 364 ASRGLDIPTVDLVLNYDIP-RYPRDYVHRVGRTARAGRGGLA-------VSFVTQNDVD 414 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~p-~s~~~y~qr~GR~gR~g~~g~~-------~~~~~~~~~~ 414 (493)
+.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ +.|++.+..+
T Consensus 552 gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999999999999998 4999999999999999877665 7888877544
No 81
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=300.10 Aligned_cols=378 Identities=19% Similarity=0.271 Sum_probs=285.0
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCCcccc-ccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC-CcEEEEccCCC
Q 011100 31 PEPESKNAKTTQLEKFTNPDPNSTTTDSTVTF-AGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG-KDVLGLAQTGS 108 (493)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGs 108 (493)
-|+.+......+.+..+.|.++..+......| .-..+|.|-..++ .|..++.++|..+.+..+.+ .++++|||||+
T Consensus 259 lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGa 336 (1674)
T KOG0951|consen 259 LPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGA 336 (1674)
T ss_pred cCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCC
Confidence 34445555556677777777776666555554 4556888999988 78888999999999988877 56999999999
Q ss_pred CchhHhHHHHHHHhhcCCC--------CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCc
Q 011100 109 GKTAAFALPILHRLAEDPY--------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180 (493)
Q Consensus 109 GKTl~~~l~~l~~l~~~~~--------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 180 (493)
|||.++++.+++.+..+.+ ..++++++|+++|++.|...|.+....+|+.|..++|+.....+. ...+.
T Consensus 337 GKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTq 413 (1674)
T KOG0951|consen 337 GKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQ 413 (1674)
T ss_pred CchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcce
Confidence 9999999999999876532 457999999999999999999999999999999999997754333 24689
Q ss_pred EEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC-------CcCCceeeeeecccc--hHH
Q 011100 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-------PKNRQTLLFSATMTS--DLQ 251 (493)
Q Consensus 181 Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~--~~~ 251 (493)
|+|+||++.....++..+ ....+-++++|+||.|.+.+ ..++.++.|..+. ..+.+++++|||+|+ ++.
T Consensus 414 VIV~TPEK~DiITRk~gd-raY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~ 491 (1674)
T KOG0951|consen 414 VIVTTPEKWDIITRKSGD-RAYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVA 491 (1674)
T ss_pred eEEeccchhhhhhcccCc-hhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhH
Confidence 999999997666655433 23345788999999996644 4778877665443 247899999999998 455
Q ss_pred HHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHH-----HHHhhhhcCCCeEEEEecchhhHHHHHHHHHh
Q 011100 252 TLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH-----VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326 (493)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~ 326 (493)
.++.... +-.+..... -.+..+.+.|+.+..+........ .-+-+...+.+++|||+.+++++-+.|+.++.
T Consensus 492 ~Fl~v~~--~glf~fd~s-yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd 568 (1674)
T KOG0951|consen 492 SFLRVDP--EGLFYFDSS-YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRD 568 (1674)
T ss_pred HHhccCc--ccccccCcc-cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHH
Confidence 5544443 222222233 345668888888876554433211 11234555668999999999988888877763
Q ss_pred -------------------------------------cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCC
Q 011100 327 -------------------------------------LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369 (493)
Q Consensus 327 -------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 369 (493)
+....+.+|+||+..+|..+.+.|+.|.++|+|+|-.+++|+|
T Consensus 569 ~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvn 648 (1674)
T KOG0951|consen 569 KALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVN 648 (1674)
T ss_pred HHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcC
Confidence 1345788999999999999999999999999999999999999
Q ss_pred CCCcCeEEE----ecCC------CCCCcceeeccccccCCCC--ccEEEEEecccHHHHHH
Q 011100 370 IPTVDLVLN----YDIP------RYPRDYVHRVGRTARAGRG--GLAVSFVTQNDVDLIHE 418 (493)
Q Consensus 370 i~~v~~Vi~----~~~p------~s~~~y~qr~GR~gR~g~~--g~~~~~~~~~~~~~~~~ 418 (493)
+|...++|- ||+- .++.+.+||+||+||.+.+ |..++.....+..+...
T Consensus 649 lpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 649 LPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred CCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHH
Confidence 998777774 4433 3567889999999998754 66676666666655544
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1e-34 Score=309.04 Aligned_cols=304 Identities=21% Similarity=0.280 Sum_probs=212.9
Q ss_pred HHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc----HHHHHHHHHHHHH-hccCCCceE
Q 011100 85 PVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT----RELAYQLAEQFKA-LGSGLHLRC 159 (493)
Q Consensus 85 ~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt----~~L~~q~~~~~~~-~~~~~~~~~ 159 (493)
.+-.+.+..+.+++.++++|+||||||+ ++|.+...........+++.-|. ++||.++.+++.. ++...|+.+
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v 154 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV 154 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee
Confidence 3445566667777889999999999999 46744322222112345555675 5777777777764 333333322
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc-ccccCCCHHH-HHHHHHhCCcCC
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD-RVLDVGFEEE-LRVVFQCLPKNR 237 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah-~~~~~~~~~~-~~~i~~~~~~~~ 237 (493)
... .....+++|+|+|||+|...+... ..++++++||||||| ++++.+|... +..++.. .++.
T Consensus 155 ----rf~------~~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 155 ----RFN------DQVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred ----cCc------cccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhhc-CCCc
Confidence 111 112357899999999999988764 348999999999999 6888887643 3333332 2468
Q ss_pred ceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCc---chHHHHHHH---HhhhhcCCCeEEEEe
Q 011100 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV---KDVYLMHVL---SKMEDMGIRSAIIFV 311 (493)
Q Consensus 238 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~---~~~~~~~~~~~lVf~ 311 (493)
|+++||||++. +.+...+.+.+.+ .+... ...+...|....... +...+..++ ..+...+.+.+||||
T Consensus 220 KvILmSATid~--e~fs~~F~~apvI-~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFL 293 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAPII-EVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFM 293 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCCEE-EEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 99999999963 5666666655543 22221 122444554433221 123333333 223334457899999
Q ss_pred cchhhHHHHHHHHHhcCCc---eeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC-------
Q 011100 312 STCRSCHLLSLLLEELDQE---AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI------- 381 (493)
Q Consensus 312 ~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~------- 381 (493)
++...++.+++.|...++. +..+||+|++.+|..+++. .|..+||||||++++|||+|++++||+++.
T Consensus 294 pg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd 371 (1294)
T PRK11131 294 SGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1294)
T ss_pred CCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccc
Confidence 9999999999999988764 6789999999999999876 478899999999999999999999999863
Q ss_pred --------C---CCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 382 --------P---RYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 382 --------p---~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
| .|..+|.||+||+||. .+|.||.+|+.++..
T Consensus 372 ~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 3 3446899999999998 789999999987654
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.1e-33 Score=295.29 Aligned_cols=344 Identities=18% Similarity=0.162 Sum_probs=221.7
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 82 RPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
.|.|||..++..++.. ..+|++.++|.|||+.+.+.+...+.. +...++|||||. .|..||..++.+.+ ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 4999999998777654 359999999999999887655554444 335679999998 89999999997655 4554
Q ss_pred EEEEcCCCHHHHH--HHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC--CHHHHHHHHHhCCc
Q 011100 160 EVVVGGMDLLTQA--KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG--FEEELRVVFQCLPK 235 (493)
Q Consensus 160 ~~~~g~~~~~~~~--~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~--~~~~~~~i~~~~~~ 235 (493)
..+.++....... .......+++|++.+.+...-.... ...-..+++|||||||++.... ....+..+......
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~--~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLE--QALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHH--HHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 4444332110000 0111246899999887654111000 0011367899999999987321 11223222222223
Q ss_pred CCceeeeeecccc-h------------------HHHHHH-------------Hhc-CCc---------------------
Q 011100 236 NRQTLLFSATMTS-D------------------LQTLLE-------------LSA-NKA--------------------- 261 (493)
Q Consensus 236 ~~~~i~~SAT~~~-~------------------~~~~~~-------------~~~-~~~--------------------- 261 (493)
...++++||||-. . ...+.. ... ..+
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l 384 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPL 384 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHH
Confidence 4578999999852 0 011100 000 000
Q ss_pred ------------------------------eEEec-cccccc-cccceEEE-EEecCCc---------------------
Q 011100 262 ------------------------------YFYEA-YEGFKT-VETLKQQY-IFIPKNV--------------------- 287 (493)
Q Consensus 262 ------------------------------~~~~~-~~~~~~-~~~~~~~~-~~~~~~~--------------------- 287 (493)
..+.. ...... +....+.+ ...+...
T Consensus 385 ~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~ 464 (956)
T PRK04914 385 LQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQI 464 (956)
T ss_pred HhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHH
Confidence 00000 000000 00000000 0000000
Q ss_pred ------------chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHH-hcCCceeeccCCCCHHHHHHHHHHhhcC-
Q 011100 288 ------------KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE-ELDQEAVALHSFKSQSQRLSALHRFKSG- 353 (493)
Q Consensus 288 ------------~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g- 353 (493)
....+..++..+......++||||+++..+..++..|+ ..|+.+..+||+|+..+|..+++.|+++
T Consensus 465 ~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~ 544 (956)
T PRK04914 465 YQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEE 544 (956)
T ss_pred HHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCC
Confidence 00011122222333334799999999999999999994 6799999999999999999999999984
Q ss_pred -CCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccccccc
Q 011100 354 -QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFEC 432 (493)
Q Consensus 354 -~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (493)
..+|||||+++++|+|++.+++||+||+|+++..|.||+||+||.|+.+.+.+++...+......+.+.+...+..++.
T Consensus 545 ~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~ 624 (956)
T PRK04914 545 DGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEH 624 (956)
T ss_pred CCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceec
Confidence 6999999999999999999999999999999999999999999999999887777766655667777777776655543
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=5.6e-33 Score=288.63 Aligned_cols=313 Identities=21% Similarity=0.240 Sum_probs=221.1
Q ss_pred CCcHHHHhhhhhhhcC---CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCce
Q 011100 82 RPTPVQTHCIPKILEG---KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLR 158 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~---~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 158 (493)
.|++.|.++++.+.++ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+.+.+ +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 789999999999999999888877765 6689999999999999999998865 578
Q ss_pred EEEEEcCCCHHHHHHH----hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCC------HHHHHH
Q 011100 159 CEVVVGGMDLLTQAKS----LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF------EEELRV 228 (493)
Q Consensus 159 ~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~------~~~~~~ 228 (493)
+..++|+.+..+.... ..+.++|+|+|++.+. ..+.++++|||||+|...-... ...+.
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va- 286 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA- 286 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-
Confidence 8899998876544322 2456899999987652 3467889999999997543211 12222
Q ss_pred HHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC-------CcchHHHHHHHHhhhh
Q 011100 229 VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK-------NVKDVYLMHVLSKMED 301 (493)
Q Consensus 229 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~ 301 (493)
+++....+.+++++|||++.. .+.....+.....................+.... ..-...+...+.....
T Consensus 287 ~~ra~~~~~~~il~SATps~~--s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 287 VVRAKLENIPVVLGSATPSLE--SLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HHHhhccCCCEEEEcCCCCHH--HHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 333445688999999998643 3333332333333332222111111111221111 0112334444444333
Q ss_pred cCCCeEEEEecch------------------------------------------------------------hhHHHHH
Q 011100 302 MGIRSAIIFVSTC------------------------------------------------------------RSCHLLS 321 (493)
Q Consensus 302 ~~~~~~lVf~~~~------------------------------------------------------------~~~~~l~ 321 (493)
.+ .++|||+|++ ..++.++
T Consensus 365 ~g-~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 365 RG-EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred cC-CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 33 6888887752 1356777
Q ss_pred HHHHhc--CCceeeccCCCC--HHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE--ecCCCCC----------
Q 011100 322 LLLEEL--DQEAVALHSFKS--QSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN--YDIPRYP---------- 385 (493)
Q Consensus 322 ~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--~~~p~s~---------- 385 (493)
+.|.+. +.++..+|+++. .++++.+++.|++|+.+|||+|+++++|+|+|++++|+. +|.+.+.
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 788776 678899999986 467899999999999999999999999999999999854 4555444
Q ss_pred CcceeeccccccCCCCccEEEEEecccHH
Q 011100 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 386 ~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
..|.|++||+||.+..|.+++.....+..
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 34799999999999999999877654433
No 85
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3e-33 Score=289.46 Aligned_cols=360 Identities=20% Similarity=0.216 Sum_probs=281.9
Q ss_pred HHHHcCCCCCcHHHHhhhhhhhcC------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 011100 74 TCKELGMRRPTPVQTHCIPKILEG------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQ 147 (493)
Q Consensus 74 ~l~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 147 (493)
....++|. -|+-|..||..+.+. .|-++||..|-|||-+++=++...++. |++|.|+|||--||+|.++.
T Consensus 587 F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 587 FEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred HHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHhHHHHHHH
Confidence 33456676 799999999998753 589999999999999999999888888 78999999999999999999
Q ss_pred HHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH
Q 011100 148 FKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223 (493)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~ 223 (493)
|++.+.++++++..++.=.+..++...+ .+..|||||| +.++... ..+.+++++||||-|+ |+
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~kd----v~FkdLGLlIIDEEqR-----FG 729 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSKD----VKFKDLGLLIIDEEQR-----FG 729 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCCC----cEEecCCeEEEechhh-----cC
Confidence 9999999999999988877766655443 4679999999 6666654 4578999999999999 78
Q ss_pred HHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcC
Q 011100 224 EELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMG 303 (493)
Q Consensus 224 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (493)
-.-..-++.+..+..++-+||||.+..-.+.-....+-..+.... ...+.... ++........-..++.++...
T Consensus 730 Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP----~~R~pV~T-~V~~~d~~~ireAI~REl~Rg- 803 (1139)
T COG1197 730 VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP----EDRLPVKT-FVSEYDDLLIREAILRELLRG- 803 (1139)
T ss_pred ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC----CCCcceEE-EEecCChHHHHHHHHHHHhcC-
Confidence 888888888888999999999998766555544444333332211 11122222 222233333334455555543
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI 381 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 381 (493)
+++-..+|.++..+.++..|+++ ...+++.||.|+..+-+.++..|.+|+++|||||.+++.|||+|+++++|..+.
T Consensus 804 -GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 804 -GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred -CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 58888899999999999999987 456888999999999999999999999999999999999999999999998776
Q ss_pred CCC-CCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHHHHHhhcccch
Q 011100 382 PRY-PRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEVLSDITRVYKARRVATMKLMDDGF 460 (493)
Q Consensus 382 p~s-~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (493)
.+- ..+..|.-||+||.++.+.|+.++.+... +.+...+.-+.+..++.......+|..++.-+|.
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~-------------lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGa 949 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA-------------LTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGA 949 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEEEEeecCccc-------------cCHHHHHHHHHHHhhhhcCchHHHHhcchhcccc
Confidence 643 56778999999999999999999987642 2222222334566677777788899999999999
Q ss_pred HHHHHHHHHH
Q 011100 461 EEKAKERKKQ 470 (493)
Q Consensus 461 ~~~~~~~~~~ 470 (493)
|+..-+++..
T Consensus 950 GNlLG~eQSG 959 (1139)
T COG1197 950 GNLLGEEQSG 959 (1139)
T ss_pred ccccCccccC
Confidence 9887777643
No 86
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=274.89 Aligned_cols=314 Identities=20% Similarity=0.287 Sum_probs=242.3
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
..|. +-|+|..+|..+-.+.+++|.|.|.+|||.++..++...+.. ..++++..|-++|.+|-++++..-++.
T Consensus 126 YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~D--- 198 (1041)
T KOG0948|consen 126 YPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKD--- 198 (1041)
T ss_pred CCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcc---
Confidence 3444 889999999999999999999999999999999999999888 668999999999999999999887765
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
|+..+|+... .+.+.-+|+|.+.|..++.+++ ..+..+.+||+||+|.|-|...+-.|+.-+-.+|++.
T Consensus 199 -VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 -VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred -cceeecceee-------CCCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 4557787653 4677889999999999999884 4588999999999999999999999998888899999
Q ss_pred ceeeeeecccchHHHHHHHh--cCCceEEeccccccccccceEE---------EEEecCCcc------------------
Q 011100 238 QTLLFSATMTSDLQTLLELS--ANKAYFYEAYEGFKTVETLKQQ---------YIFIPKNVK------------------ 288 (493)
Q Consensus 238 ~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~------------------ 288 (493)
+.+++|||+|+..+...|.+ ...|..+ ++.+++. ..+.++ |..+..+.+
T Consensus 268 r~VFLSATiPNA~qFAeWI~~ihkQPcHV-VYTdyRP-TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 268 RFVFLSATIPNARQFAEWICHIHKQPCHV-VYTDYRP-TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred eEEEEeccCCCHHHHHHHHHHHhcCCceE-EeecCCC-CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 99999999999766554443 2333322 2222222 122222 222222211
Q ss_pred ----------------------hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCC-----------------
Q 011100 289 ----------------------DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ----------------- 329 (493)
Q Consensus 289 ----------------------~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~----------------- 329 (493)
...+..+++........++|||+-+++.|+.+|-.+..+.+
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 11223344433344447899999999999999988766432
Q ss_pred ----------------------ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----ecC--
Q 011100 330 ----------------------EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----YDI-- 381 (493)
Q Consensus 330 ----------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~-- 381 (493)
.+.++|||+-+--++.+.-.|.+|-+++|+||.+++.|+|+|.-.+|+- ||-
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~ 505 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKK 505 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcc
Confidence 2678999999999999999999999999999999999999997776664 211
Q ss_pred --CCCCCcceeeccccccCCCC--ccEEEEEecc
Q 011100 382 --PRYPRDYVHRVGRTARAGRG--GLAVSFVTQN 411 (493)
Q Consensus 382 --p~s~~~y~qr~GR~gR~g~~--g~~~~~~~~~ 411 (493)
..+.-+|+|+.|||||.|.+ |.||++++..
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 12466899999999999965 7777777643
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-33 Score=300.75 Aligned_cols=306 Identities=20% Similarity=0.224 Sum_probs=214.6
Q ss_pred HhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 011100 88 THCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 167 (493)
Q Consensus 88 ~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 167 (493)
.+.+..+..++.++|+|+||||||+. +|.+..-.......++++.-|.|.-|..++..+.... |..++..+|...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~v 147 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYKV 147 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeEE
Confidence 35556666777899999999999985 5544332222223467777899988888776665533 334434444321
Q ss_pred HHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc-ccccCCCHHH-HHHHHHhCCcCCceeeeeec
Q 011100 168 LLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD-RVLDVGFEEE-LRVVFQCLPKNRQTLLFSAT 245 (493)
Q Consensus 168 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT 245 (493)
..+ ......+.|.|+|+|.|...+... ..++++++||||||| +.++.++... +..++... ++.++++||||
T Consensus 148 R~~--~~~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSAT 220 (1283)
T TIGR01967 148 RFH--DQVSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSAT 220 (1283)
T ss_pred cCC--cccCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCC
Confidence 111 112356899999999999988764 247899999999999 5888877654 55555443 57899999999
Q ss_pred ccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCc------chHHHHHHHHhhhhcCCCeEEEEecchhhHHH
Q 011100 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV------KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319 (493)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~ 319 (493)
+. ...+...+.+.+.+. +... ...+...|....... ....+...+..+.....+.+|||+++..+++.
T Consensus 221 ld--~~~fa~~F~~apvI~-V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~ 294 (1283)
T TIGR01967 221 ID--PERFSRHFNNAPIIE-VSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRD 294 (1283)
T ss_pred cC--HHHHHHHhcCCCEEE-ECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHH
Confidence 96 456777766555432 2211 112333443322111 11223333443333345789999999999999
Q ss_pred HHHHHHhcCC---ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCC-------------
Q 011100 320 LSLLLEELDQ---EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR------------- 383 (493)
Q Consensus 320 l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~------------- 383 (493)
++..|...+. .+..+||+|+.++|..++..+ +..+|||||+++++|||+|++++||++++++
T Consensus 295 l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 295 AAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred HHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 9999998643 578899999999999986654 3479999999999999999999999998654
Q ss_pred -----CCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 384 -----YPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 384 -----s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
|..+|.||+||+||.| +|.||.+|+.++..
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 3458999999999997 89999999987654
No 88
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-32 Score=282.86 Aligned_cols=322 Identities=18% Similarity=0.238 Sum_probs=245.3
Q ss_pred HHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 75 CKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 75 l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
...+||. |-++|++++..+..+.+++|+||||+|||++...++...+.. +.++++++|.++|.+|.++.+...+..
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---GQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---CCceEeccchhhhhhhHHHHHHHHhhh
Confidence 3447887 999999999999999999999999999999999988888877 556999999999999999999887654
Q ss_pred CCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC
Q 011100 155 LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234 (493)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~ 234 (493)
..--+++++|+.+. .++..++|+|.+.|.+++..+ ...+..+.+||+||+|.+.+...+..|+.++-.+|
T Consensus 189 v~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg---~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRG---SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceecceee-------CCCCceEEeeHHHHHHHhccC---cccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 32234678887663 577899999999999999887 44588999999999999999999999999999999
Q ss_pred cCCceeeeeecccchHHHHHHHh--cCCceEEeccccccccccceEEEEEe-------cCCcc-----------------
Q 011100 235 KNRQTLLFSATMTSDLQTLLELS--ANKAYFYEAYEGFKTVETLKQQYIFI-------PKNVK----------------- 288 (493)
Q Consensus 235 ~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----------------- 288 (493)
.+.+++++|||+++..+.-.|+. ...+..+...+ ..+..+.+++..- ..+.+
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~ 336 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFS 336 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccc
Confidence 99999999999998665544444 23332222211 2222233322211 11110
Q ss_pred ---------------------------hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc--------------
Q 011100 289 ---------------------------DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL-------------- 327 (493)
Q Consensus 289 ---------------------------~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-------------- 327 (493)
...-..+++.+.....-++|+|+-++..|+.++..+..+
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ 416 (1041)
T COG4581 337 EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIRE 416 (1041)
T ss_pred hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHH
Confidence 000012344444444568999999999999988877521
Q ss_pred --------------CC-------------ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE--
Q 011100 328 --------------DQ-------------EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN-- 378 (493)
Q Consensus 328 --------------~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~-- 378 (493)
++ .++++|++|-+..+..+...|..|-++|+++|.+++.|+|+|.-.+|+-
T Consensus 417 ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l 496 (1041)
T COG4581 417 IIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSL 496 (1041)
T ss_pred HHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeee
Confidence 11 2457899999999999999999999999999999999999997776653
Q ss_pred --e----cCCCCCCcceeeccccccCCCC--ccEEEEEeccc
Q 011100 379 --Y----DIPRYPRDYVHRVGRTARAGRG--GLAVSFVTQND 412 (493)
Q Consensus 379 --~----~~p~s~~~y~qr~GR~gR~g~~--g~~~~~~~~~~ 412 (493)
+ ..+.++.+|.|+.|||||.|.+ |.+++...+..
T Consensus 497 ~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 497 SKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred EEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 2 1344688999999999999975 66666654443
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.2e-31 Score=269.33 Aligned_cols=323 Identities=17% Similarity=0.187 Sum_probs=237.6
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|.. |+++|.-.--.+.+| -|+.++||+|||++|.+|++..... +..++||+||++||.|.++++..++..+|+
T Consensus 79 lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred cCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 4654 888887666556555 5899999999999999999987765 456999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCCCC---CccCCcceEeeccccccc-cCC-----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDIP---PVFSRTKFLVLDEADRVL-DVG----------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~---~~l~~~~~vViDEah~~~-~~~----------- 221 (493)
.+.+++|+.+...+...+ .++|+|+||++| .+++.....+. .....+.++||||||.++ |..
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 999999998876655544 689999999999 88887653211 123578999999999875 210
Q ss_pred ----CHHH--------------------------------------HHHHHHh---CC----------------------
Q 011100 222 ----FEEE--------------------------------------LRVVFQC---LP---------------------- 234 (493)
Q Consensus 222 ----~~~~--------------------------------------~~~i~~~---~~---------------------- 234 (493)
.... ++.++.. ++
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 0000 0111100 00
Q ss_pred ------c-------------------------------------------------------------CCceeeeeeccc
Q 011100 235 ------K-------------------------------------------------------------NRQTLLFSATMT 247 (493)
Q Consensus 235 ------~-------------------------------------------------------------~~~~i~~SAT~~ 247 (493)
. ...+.+||+|..
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 0 013456666665
Q ss_pred chHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc
Q 011100 248 SDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL 327 (493)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~ 327 (493)
.....+...+.-....+. ...+....-....++.....+...+...+..+...+ .|+||||+|++.++.++..|.+.
T Consensus 391 te~~Ef~~iY~l~Vv~IP--tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g-~PVLVgt~Sie~sE~ls~~L~~~ 467 (896)
T PRK13104 391 TEAYEFQQIYNLEVVVIP--TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRK-QPVLVGTVSIEASEFLSQLLKKE 467 (896)
T ss_pred hHHHHHHHHhCCCEEECC--CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCC-CCEEEEeCcHHHHHHHHHHHHHc
Confidence 555555554433322221 111111111222334444445555666666666655 89999999999999999999999
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCC-----------------------------------
Q 011100 328 DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT----------------------------------- 372 (493)
Q Consensus 328 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~----------------------------------- 372 (493)
++.+.++|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 468 gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 545 (896)
T PRK13104 468 NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVI 545 (896)
T ss_pred CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999994 9999999999999851
Q ss_pred ---cCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 373 ---VDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 373 ---v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
=-+||-...+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 546 ~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 546 AAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12788888888888889999999999999999999987763
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4e-31 Score=265.27 Aligned_cols=290 Identities=21% Similarity=0.235 Sum_probs=199.0
Q ss_pred EEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHH----hc
Q 011100 101 LGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS----LM 176 (493)
Q Consensus 101 lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~ 176 (493)
++.|+||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +..+..++++.+..+.... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999998776666655 6689999999999999999998865 5678888888765543222 23
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-----C-HHHHHHHHHhCCcCCceeeeeecccchH
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-----F-EEELRVVFQCLPKNRQTLLFSATMTSDL 250 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-----~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 250 (493)
+..+|+|+|+..+. ..+.++++|||||+|...-.+ | ...+.. +.....+.+++++|||++ +
T Consensus 75 g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~-~ra~~~~~~vil~SATPs--l 141 (505)
T TIGR00595 75 GEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV-YRAKKFNCPVVLGSATPS--L 141 (505)
T ss_pred CCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHH-HHHHhcCCCEEEEeCCCC--H
Confidence 56899999987542 246788999999999865322 1 122322 233345888999999976 4
Q ss_pred HHHHHHhcCCceEEeccccccccccceEEEEEecCCc----chHHHHHHHHhhhhcCCCeEEEEecchhh----------
Q 011100 251 QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV----KDVYLMHVLSKMEDMGIRSAIIFVSTCRS---------- 316 (493)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~lVf~~~~~~---------- 316 (493)
+.+.....+....................++...... -...+...+......+ +++|||+|++..
T Consensus 142 es~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g-~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 142 ESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAG-EQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcC-CcEEEEEeCCcCCCeeEhhhCc
Confidence 4444433333322222221111111122222221111 1223444444444444 689999765432
Q ss_pred --------------------------------------------------HHHHHHHHHhc--CCceeeccCCCCHHHH-
Q 011100 317 --------------------------------------------------CHLLSLLLEEL--DQEAVALHSFKSQSQR- 343 (493)
Q Consensus 317 --------------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~~r- 343 (493)
.+.+++.|.+. +.++..+|+++....+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 47778888876 6788999999987766
Q ss_pred -HHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEE--EecCCCCC----------CcceeeccccccCCCCccEEEEEec
Q 011100 344 -LSALHRFKSGQATILLATDVASRGLDIPTVDLVL--NYDIPRYP----------RDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 344 -~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi--~~~~p~s~----------~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
+.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|...+. ..|.|++||+||.+..|.+++....
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 8899999999999999999999999999999885 55654333 3479999999999999999865543
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-30 Score=266.73 Aligned_cols=323 Identities=20% Similarity=0.204 Sum_probs=240.7
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+. |+++|.-..-.+.+| -|..+.||+|||+++.+|++..... +..+-|++||..||.|.++.+..++..+|+
T Consensus 78 lg~~-~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~---G~~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT---GKGVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCCC-CCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 5665 899998777666666 4999999999999999999744444 345789999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCCC---CCccCCcceEeeccccccc-cCC-----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDI---PPVFSRTKFLVLDEADRVL-DVG----------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~---~~~l~~~~~vViDEah~~~-~~~----------- 221 (493)
++.+++|+.+...+...+ .++|+|+||++| .++++..... ...+..+.++||||||.++ |..
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 999999998887666554 589999999999 8888655321 1235788999999999865 210
Q ss_pred ----CHHHHHHHHHhCCc--------------------------------------------------------------
Q 011100 222 ----FEEELRVVFQCLPK-------------------------------------------------------------- 235 (493)
Q Consensus 222 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 235 (493)
....+..+...+..
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00111111111100
Q ss_pred -------------------------------------------------------CCceeeeeecccchHHHHHHHhcCC
Q 011100 236 -------------------------------------------------------NRQTLLFSATMTSDLQTLLELSANK 260 (493)
Q Consensus 236 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 260 (493)
...+.+||+|.......+...+.-.
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 389 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLD 389 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCC
Confidence 0246677777766655565555443
Q ss_pred ceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCH
Q 011100 261 AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340 (493)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 340 (493)
...+.. ..+....-....++.....+...+...+......+ .++||||+|+..++.++..|.+.++++..+|+. +
T Consensus 390 vv~IPt--nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~g-rpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q 464 (830)
T PRK12904 390 VVVIPT--NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKG-QPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--N 464 (830)
T ss_pred EEEcCC--CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcC-CCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--h
Confidence 332221 11111111122333344456666666666554444 799999999999999999999999999999994 8
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc--------------------------------------CeEEEecCC
Q 011100 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTV--------------------------------------DLVLNYDIP 382 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v--------------------------------------~~Vi~~~~p 382 (493)
.+|+..+..|+.+...|+|||++++||+||+=- -|||....|
T Consensus 465 ~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerh 544 (830)
T PRK12904 465 HEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERH 544 (830)
T ss_pred HHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccC
Confidence 899999999999999999999999999999632 278888899
Q ss_pred CCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 383 RYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 383 ~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 545 esrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 545 ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred chHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 9988889999999999999999999997763
No 92
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=1.2e-30 Score=273.03 Aligned_cols=312 Identities=20% Similarity=0.215 Sum_probs=202.0
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCC--Cc
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL--HL 157 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~ 157 (493)
..+|+|+|..+......+..+++.||||+|||.++++++...+ ......+++|..||+++++|+++++.++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-HhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4479999998865444456689999999999999877665433 33335679999999999999999987643321 34
Q ss_pred eEEEEEcCCCHHHHHH--------------------H-hc---C---CCcEEEECcchHHHHHhcCCCCCCccCCc----
Q 011100 158 RCEVVVGGMDLLTQAK--------------------S-LM---N---RPHVVIATPGRIKVLLEEDPDIPPVFSRT---- 206 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~--------------------~-~~---~---~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~---- 206 (493)
.+...+|......... . +. . -.+|+|||++.++..+-..+. ..+..+
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~lR~~~La~ 440 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFIRGFGLGR 440 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHHHHHhhcc
Confidence 5667776553211100 0 00 1 168999999987754433221 112222
Q ss_pred ceEeeccccccccCCCHHHHHHHHHhCC-cCCceeeeeecccchHHH-HHHHhcCC-c------e-EEeccc-----ccc
Q 011100 207 KFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFSATMTSDLQT-LLELSANK-A------Y-FYEAYE-----GFK 271 (493)
Q Consensus 207 ~~vViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~-~~~~~~~~-~------~-~~~~~~-----~~~ 271 (493)
++|||||+|.+-. -....+..+++.+. ....+|+||||+|..... +...+... . + .+.... ...
T Consensus 441 svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~ 519 (878)
T PRK09694 441 SVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFD 519 (878)
T ss_pred CeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeee
Confidence 4799999997632 23344444444432 356799999999986654 33322111 0 0 000000 000
Q ss_pred ---ccc--cceEEEEE--e--cCCcc-hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC---CceeeccCCC
Q 011100 272 ---TVE--TLKQQYIF--I--PKNVK-DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD---QEAVALHSFK 338 (493)
Q Consensus 272 ---~~~--~~~~~~~~--~--~~~~~-~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~ 338 (493)
... .....+.. . ..... ...+..++.... . .++++|||||++.|+.+++.|++.+ ..+..+||.+
T Consensus 520 ~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-~-g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 520 LSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-A-GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred ccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 000 01111111 1 11111 223333333332 2 3689999999999999999999765 5789999999
Q ss_pred CHHHHH----HHHHHh-hcCC---CeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCC
Q 011100 339 SQSQRL----SALHRF-KSGQ---ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400 (493)
Q Consensus 339 ~~~~r~----~~~~~f-~~g~---~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~ 400 (493)
...+|. .+++.| ++|+ ..|||||+++++|+|+ +++++|....| .+.++||+||+||.+.
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999994 567788 5565 4799999999999999 68999998888 6799999999999875
No 93
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3.7e-31 Score=238.18 Aligned_cols=200 Identities=47% Similarity=0.739 Sum_probs=180.9
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC--CCCeEEEEEcccHH
Q 011100 62 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED--PYGVLALVITPTRE 139 (493)
Q Consensus 62 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~--~~~~~~lil~Pt~~ 139 (493)
|+++++++.+.+.+..+|+..|+++|.++++.+.+|+++++.+|||+|||++|++|++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6889999999999999999999999999999999999999999999999999999999998876 45778999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc
Q 011100 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~ 219 (493)
|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.+..++.... ..+.+++++|+||+|.+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChHHhhc
Confidence 9999999999998877899999999998877766666789999999999999887663 4578899999999999998
Q ss_pred CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEE
Q 011100 220 VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFY 264 (493)
Q Consensus 220 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 264 (493)
.++...+..++..++...|++++|||+++.+..+.....+.+.++
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999999899999999999999988888777766543
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=5.9e-30 Score=261.57 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=129.2
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 63 AGLGLAEWAVQTCK-----ELGMRRP---TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 63 ~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
+.+++..++.+.+. ..||..| +|+|.++++.+..++++++.++||+|||++|++|++..+... ..++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG---KPVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---CCeEEE
Confidence 56778888887776 5789988 999999999999999999999999999999999999887653 348999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCCCCC----ccCCcceE
Q 011100 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDIPP----VFSRTKFL 209 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~~----~l~~~~~v 209 (493)
+||++||.|.++.+..++..+|+++.+++||.+...+...+ .++|+|+||++| .++++....... ....+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999999987776554 589999999999 898886521111 12456899
Q ss_pred eeccccccc
Q 011100 210 VLDEADRVL 218 (493)
Q Consensus 210 ViDEah~~~ 218 (493)
||||||.|+
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999876
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=6.1e-31 Score=268.14 Aligned_cols=323 Identities=19% Similarity=0.200 Sum_probs=233.6
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+. |+++|.-+.-.+..|+ |+.+.||+|||+++.+|++..... |..+-|++|+..||.|-++.+..++..+|+
T Consensus 77 ~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 5665 9999988776676775 999999999999999999988888 777999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHH-HHHhcCCC---CCCccCCcceEeeccccccc-cCC-----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEEDPD---IPPVFSRTKFLVLDEADRVL-DVG----------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~~---~~~~l~~~~~vViDEah~~~-~~~----------- 221 (493)
+++++.++......... -.+||+++|...+- +.|+.... -......+.+.||||+|.++ |..
T Consensus 151 ~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 99999998776554443 47899999987652 23322110 01234567899999999765 210
Q ss_pred ----CHHHHHHHHHhCCc--------------------------------------------------------------
Q 011100 222 ----FEEELRVVFQCLPK-------------------------------------------------------------- 235 (493)
Q Consensus 222 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 235 (493)
....+..+...+..
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 00000000000000
Q ss_pred ------------------------------------------------------------------CCceeeeeecccch
Q 011100 236 ------------------------------------------------------------------NRQTLLFSATMTSD 249 (493)
Q Consensus 236 ------------------------------------------------------------------~~~~i~~SAT~~~~ 249 (493)
..++.+||+|....
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 02456777777655
Q ss_pred HHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCC
Q 011100 250 LQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ 329 (493)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~ 329 (493)
...+...+.-....+ ....+....-....++.....+...+...+......+ .++||||+|+..++.++..|.+.++
T Consensus 389 ~~Ef~~iY~l~vv~I--Ptnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g-~pvLI~t~si~~se~ls~~L~~~gi 465 (796)
T PRK12906 389 EEEFREIYNMEVITI--PTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKG-QPVLVGTVAIESSERLSHLLDEAGI 465 (796)
T ss_pred HHHHHHHhCCCEEEc--CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCC-CCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 555555443332222 1111111111112233333445555555555444444 8999999999999999999999999
Q ss_pred ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC---CcC-----eEEEecCCCCCCcceeeccccccCCCC
Q 011100 330 EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP---TVD-----LVLNYDIPRYPRDYVHRVGRTARAGRG 401 (493)
Q Consensus 330 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~---~v~-----~Vi~~~~p~s~~~y~qr~GR~gR~g~~ 401 (493)
++..+|+.+...++..+..+++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++||+||.|.+
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~ 543 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDP 543 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCC
Confidence 9999999998777777777776665 999999999999994 888 999999999999999999999999999
Q ss_pred ccEEEEEecccH
Q 011100 402 GLAVSFVTQNDV 413 (493)
Q Consensus 402 g~~~~~~~~~~~ 413 (493)
|.+..|++.+|.
T Consensus 544 G~s~~~~sleD~ 555 (796)
T PRK12906 544 GSSRFYLSLEDD 555 (796)
T ss_pred cceEEEEeccch
Confidence 999999998863
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=4.6e-31 Score=261.79 Aligned_cols=290 Identities=22% Similarity=0.248 Sum_probs=199.1
Q ss_pred CCCcHHHHhhhhhhhc----CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 81 RRPTPVQTHCIPKILE----GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
..|+++|++++..+.. ++..++++|||+|||.+++..+... ...+|||||+++|+.||.+.+...... +
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~-~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKFLLL-N 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHhcCC-c
Confidence 4599999999999998 8889999999999998877655544 334999999999999999777766532 1
Q ss_pred ceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHH--hcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC
Q 011100 157 LRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLL--EEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l--~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~ 234 (493)
..+..+.|+... ... ..|.|+|.+.+.... .. ...+.+++||+||||++....+......+....
T Consensus 108 ~~~g~~~~~~~~------~~~-~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~- 174 (442)
T COG1061 108 DEIGIYGGGEKE------LEP-AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY- 174 (442)
T ss_pred cccceecCceec------cCC-CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccccCCcHHHHHHHHhhhccc-
Confidence 133344443321 111 469999998876642 21 112368999999999987654443333332222
Q ss_pred cCCceeeeeecccchH----HHHHHHhcCCceEEeccccccc----cccceEEEEEec--C-------------------
Q 011100 235 KNRQTLLFSATMTSDL----QTLLELSANKAYFYEAYEGFKT----VETLKQQYIFIP--K------------------- 285 (493)
Q Consensus 235 ~~~~~i~~SAT~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~------------------- 285 (493)
.++++|||++..- ..+..... +..+........ ........+.+. .
T Consensus 175 ---~~LGLTATp~R~D~~~~~~l~~~~g--~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 175 ---PRLGLTATPEREDGGRIGDLFDLIG--PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred ---ceeeeccCceeecCCchhHHHHhcC--CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 1899999987422 12222221 122221110000 000000001110 0
Q ss_pred -----------------CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHH
Q 011100 286 -----------------NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALH 348 (493)
Q Consensus 286 -----------------~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 348 (493)
..+...+..++.... ...+++|||.+..+++.++..+..-++ +..+.+..+..+|..+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 000001111111111 236899999999999999999988877 889999999999999999
Q ss_pred HhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccC
Q 011100 349 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARA 398 (493)
Q Consensus 349 ~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~ 398 (493)
.|+.|.+++||++.++.+|+|+|+++++|......|...|+||+||.-|.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999993
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=261.98 Aligned_cols=343 Identities=19% Similarity=0.234 Sum_probs=248.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhhh--hhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 66 GLAEWAVQTCKELGMRRPTPVQTHCIP--KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 66 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~--~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
+.+....-..+..|+..++.||.+++. .+++++++|..+||+.|||+++.+.++..+... ...++.+.|..+.+..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~E 284 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQE 284 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHH
Confidence 333344444556799999999999985 588999999999999999999999999887764 4468999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH
Q 011100 144 LAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223 (493)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~ 223 (493)
-...+..+...+|+++...+|....... ....++.|||.++-..++++.-. ...+..+++|||||.|.+.+.+.+
T Consensus 285 k~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie-~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 285 KISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIE-QGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred HHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHh-cCCccccCcEEEeeeeeeeccccc
Confidence 8899999999999999888876543211 23468999999997666554322 234678899999999999999999
Q ss_pred HHHHHHHHhC-----CcCCceeeeeecccc--hHHHHHHHhcCCceEEeccccccccccceEE-----------------
Q 011100 224 EELRVVFQCL-----PKNRQTLLFSATMTS--DLQTLLELSANKAYFYEAYEGFKTVETLKQQ----------------- 279 (493)
Q Consensus 224 ~~~~~i~~~~-----~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 279 (493)
..++.++..+ ....|+++||||+++ .+..++........+ ......+.++..
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~f----RPv~L~E~ik~G~~i~~~~r~~~lr~ia~ 435 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRF----RPVPLKEYIKPGSLIYESSRNKVLREIAN 435 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheeccc----CcccchhccCCCcccccchhhHHHHHhhh
Confidence 8888776543 234679999999997 344444322211100 000000000000
Q ss_pred -EEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh--------------------------------
Q 011100 280 -YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE-------------------------------- 326 (493)
Q Consensus 280 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-------------------------------- 326 (493)
+.......+.+.+..++.+....+ .++||||+++..|+.++..+..
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~-~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld 514 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEG-SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILD 514 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcC-CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccc
Confidence 000001111122333333333333 5699999999999988865432
Q ss_pred ------cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEe----cCCCCCCcceeeccccc
Q 011100 327 ------LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNY----DIPRYPRDYVHRVGRTA 396 (493)
Q Consensus 327 ------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~----~~p~s~~~y~qr~GR~g 396 (493)
....++++|++++.++|+.+...|++|.+.|++||++++.|+|+|..+++|-+ ....+...|.||+||||
T Consensus 515 ~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAG 594 (1008)
T KOG0950|consen 515 PVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAG 594 (1008)
T ss_pred hHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhh
Confidence 12457889999999999999999999999999999999999999999888753 23356779999999999
Q ss_pred cCCC--CccEEEEEecccHHHHHHHH
Q 011100 397 RAGR--GGLAVSFVTQNDVDLIHEIE 420 (493)
Q Consensus 397 R~g~--~g~~~~~~~~~~~~~~~~~~ 420 (493)
|.|- .|.+++++...+...+.++.
T Consensus 595 R~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 595 RTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred hcccccCcceEEEeeccchhHHHHHH
Confidence 9985 58899999999876666543
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.4e-28 Score=251.31 Aligned_cols=323 Identities=17% Similarity=0.168 Sum_probs=230.7
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|.. |+++|.-.--.+.+| -|+.++||.|||+++.+|++..... +..+.||+|+..||.|..+++..++..+|+
T Consensus 79 lgm~-~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~---g~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 79 FEMR-HFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT---GKGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred hCCC-cCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 5665 888887655455444 6899999999999999999987776 555999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCCC---CCccCCcceEeeccccccccCC------------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDI---PPVFSRTKFLVLDEADRVLDVG------------ 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~---~~~l~~~~~vViDEah~~~~~~------------ 221 (493)
+|.++.++.+...... .-.++|+++||+.| .+++...... ......+.++||||||.++-..
T Consensus 153 sv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 153 TVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred eEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 9999999888643322 34789999999998 7777665221 1123678899999999876310
Q ss_pred ----CHHHHHHHHHhCC-------------------cC------------------------------------------
Q 011100 222 ----FEEELRVVFQCLP-------------------KN------------------------------------------ 236 (493)
Q Consensus 222 ----~~~~~~~i~~~~~-------------------~~------------------------------------------ 236 (493)
....+..+...+. ..
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 0000010000000 00
Q ss_pred --------------------------------------------------------------------------Cceeee
Q 011100 237 --------------------------------------------------------------------------RQTLLF 242 (493)
Q Consensus 237 --------------------------------------------------------------------------~~~i~~ 242 (493)
..+.+|
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 123444
Q ss_pred eecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHH
Q 011100 243 SATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSL 322 (493)
Q Consensus 243 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~ 322 (493)
|+|.......+...+.-....+.... +....-....++.....+...+..-+..+...+ .++||||+|+..++.++.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnk--p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~G-rpVLV~t~sv~~se~ls~ 467 (908)
T PRK13107 391 TGTADTEAFEFQHIYGLDTVVVPTNR--PMVRKDMADLVYLTADEKYQAIIKDIKDCRERG-QPVLVGTVSIEQSELLAR 467 (908)
T ss_pred cCCChHHHHHHHHHhCCCEEECCCCC--CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcC-CCEEEEeCcHHHHHHHHH
Confidence 44444433333333322222211111 111011111222333344455555556666655 899999999999999999
Q ss_pred HHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC-------------------------------
Q 011100 323 LLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP------------------------------- 371 (493)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~------------------------------- 371 (493)
.|...++.+.++|+.++..++..+...|+.|. |+|||++++||+||.
T Consensus 468 ~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (908)
T PRK13107 468 LMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRH 545 (908)
T ss_pred HHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999998 999999999999996
Q ss_pred ------CcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 372 ------TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 372 ------~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
+=-+||-...+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 546 ~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 546 DEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 112788888998888889999999999999999999998774
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=2e-28 Score=263.63 Aligned_cols=309 Identities=19% Similarity=0.232 Sum_probs=198.8
Q ss_pred CCcHHHHhhhhhhhc----C-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 82 RPTPVQTHCIPKILE----G-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~----~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
.++++|.+|+..+.+ | +..+++++||||||.+++. ++..+.......++|||+|+.+|+.|+.+.|.......+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 589999999987753 3 5799999999999988544 444455444456899999999999999999988642212
Q ss_pred ceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCC--CCCccCCcceEeeccccccccC--------------
Q 011100 157 LRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD--IPPVFSRTKFLVLDEADRVLDV-------------- 220 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~~~~l~~~~~vViDEah~~~~~-------------- 220 (493)
..+..+++...... ........|+|+|++++...+..... ....+..+++||+||||+....
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111111111 11234579999999998776432211 1134678899999999995310
Q ss_pred -CCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccc----cccc---------------------cc
Q 011100 221 -GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE----GFKT---------------------VE 274 (493)
Q Consensus 221 -~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------------~~ 274 (493)
.+...++.++... +...++|||||......+ +....+.+.... ++.. ..
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~---FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e 644 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHTTEI---FGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGE 644 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccchhHH---hCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccc
Confidence 1235667777754 356899999997432221 111111111000 0000 00
Q ss_pred ---cceE---EE--EEecCCc--c--------------hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc---
Q 011100 275 ---TLKQ---QY--IFIPKNV--K--------------DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL--- 327 (493)
Q Consensus 275 ---~~~~---~~--~~~~~~~--~--------------~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--- 327 (493)
.... .+ ...+... . ...+..+...+...+.+++||||.++++|+.+++.|.+.
T Consensus 645 ~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~ 724 (1123)
T PRK11448 645 EVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKK 724 (1123)
T ss_pred hhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 0000 00 0000000 0 001112333333334479999999999999999887763
Q ss_pred ---CC---ceeeccCCCCHHHHHHHHHHhhcCCC-eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCC
Q 011100 328 ---DQ---EAVALHSFKSQSQRLSALHRFKSGQA-TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR 400 (493)
Q Consensus 328 ---~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~ 400 (493)
+. .+..+||+++ ++..++++|+++.. +|+|+++++.+|+|+|.+++||++.++.|...|+||+||+.|...
T Consensus 725 ~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 725 KYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred hcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 12 3456888775 56789999999886 699999999999999999999999999999999999999999754
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=5.8e-28 Score=216.32 Aligned_cols=313 Identities=21% Similarity=0.264 Sum_probs=221.5
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 82 RPTPVQTHCIPKIL----EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
++++.|+.+-..+. +..+.||.|.||+|||....-.+-+.+.+ |.++.|..|....+.+++.+++.-+.+ .
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~~--~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFSN--C 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhcc--C
Confidence 48999998876654 46889999999999998755555555555 778999999999999999999988764 5
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
.+.+++|+.+.. -...++|+|...|...- +.++++||||+|.+.-..-....-.+-.......
T Consensus 172 ~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk----------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 172 DIDLLYGDSDSY-------FRAPLVVATTHQLLRFK----------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG 234 (441)
T ss_pred CeeeEecCCchh-------ccccEEEEehHHHHHHH----------hhccEEEEeccccccccCCHHHHHHHHHhhcccC
Confidence 667789987642 12678899876665443 3458999999997542221122222333344566
Q ss_pred ceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcch-------HHHHHHHHhhhhcCCCeEEEE
Q 011100 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD-------VYLMHVLSKMEDMGIRSAIIF 310 (493)
Q Consensus 238 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~lVf 310 (493)
-++.+|||+++.++.-.... ......+...+-........++++....+. ..+...++.....+ .+++||
T Consensus 235 ~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~-~P~liF 311 (441)
T COG4098 235 ATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTG-RPVLIF 311 (441)
T ss_pred ceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcC-CcEEEE
Confidence 78999999998776544332 222333333333333333444544433222 24666666666655 899999
Q ss_pred ecchhhHHHHHHHHH-hcCC-ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCC--CCCC
Q 011100 311 VSTCRSCHLLSLLLE-ELDQ-EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIP--RYPR 386 (493)
Q Consensus 311 ~~~~~~~~~l~~~l~-~~~~-~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p--~s~~ 386 (493)
++++...+.++..|+ ..+. .++.+|+ ....|.+..+.|++|++.+||+|.+++||+.+|++++.+.-.-. .+-+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 999999999999994 4443 4477888 45678889999999999999999999999999999987653222 4567
Q ss_pred cceeeccccccCC--CCccEEEEEecccHHHHHHHHH
Q 011100 387 DYVHRVGRTARAG--RGGLAVSFVTQNDVDLIHEIEA 421 (493)
Q Consensus 387 ~y~qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~~~~ 421 (493)
..+|.+||+||.- ..|.++.|-..-...+.....+
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 7899999999964 4688777776666555544443
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=7.3e-28 Score=254.40 Aligned_cols=319 Identities=16% Similarity=0.194 Sum_probs=219.0
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 82 RPTPVQTHCIPKIL----EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
++++||.+++.++. .|.+.|++..+|.|||+..+..+............+|||||. ++..||.+++..++. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 58999999999875 467899999999999998655443322222234468999997 677899999999985 36
Q ss_pred eEEEEEcCCCHHHHHH---HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC
Q 011100 158 RCEVVVGGMDLLTQAK---SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~ 234 (493)
++..++|......... ......+|+|+|++.+........ --.+++|||||||++.+.. ..+...+..+.
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~-----k~~W~~VIvDEAHrIKN~~--Sklskalr~L~ 318 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK-----RFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS 318 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc-----cCCCCEEEEcCccccCCHH--HHHHHHHHHhh
Confidence 6777777654332221 123568999999998765433221 1246799999999988753 33444555554
Q ss_pred cCCceeeeeecccc-hHHHHHHH---hcCC--------------------------------ceEEecc-ccc-cccccc
Q 011100 235 KNRQTLLFSATMTS-DLQTLLEL---SANK--------------------------------AYFYEAY-EGF-KTVETL 276 (493)
Q Consensus 235 ~~~~~i~~SAT~~~-~~~~~~~~---~~~~--------------------------------~~~~~~~-~~~-~~~~~~ 276 (493)
....+++||||-. .+..+..+ .... ++++... ... ......
T Consensus 319 -a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 319 -TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 3456889999842 12111110 0000 0000000 000 000000
Q ss_pred eEEEE---------------------------------------------------------------EecCCcchHHHH
Q 011100 277 KQQYI---------------------------------------------------------------FIPKNVKDVYLM 293 (493)
Q Consensus 277 ~~~~~---------------------------------------------------------------~~~~~~~~~~l~ 293 (493)
....+ .+....+...+.
T Consensus 398 ~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLd 477 (1033)
T PLN03142 398 KETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLD 477 (1033)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHH
Confidence 00000 011123444556
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC---CCeEEEEcCCCCCCCCC
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG---QATILLATDVASRGLDI 370 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T~~~~~Gidi 370 (493)
.++..+...+ .++|||+......+.+..+|...++.++.+||+++..+|..+++.|+.. ..-+|++|.+++.|||+
T Consensus 478 kLL~~Lk~~g-~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 478 KLLPKLKERD-SRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHhcC-CeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 6666666555 7999999999999999999999999999999999999999999999863 34578999999999999
Q ss_pred CCcCeEEEecCCCCCCcceeeccccccCCCCccE--EEEEeccc
Q 011100 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA--VSFVTQND 412 (493)
Q Consensus 371 ~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~~ 412 (493)
..+++||+||++|++..+.|++||+.|.|+...+ +.|++.+.
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999999999999999987655 45555553
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.4e-26 Score=237.06 Aligned_cols=312 Identities=19% Similarity=0.236 Sum_probs=226.7
Q ss_pred cHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh-ccCCCceEEEE
Q 011100 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL-GSGLHLRCEVV 162 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~ 162 (493)
+....+.+..+.+++-++|.|+||||||+..-..+++.-. ..+..+.+.-|.|--|..+++.+.+. +...|-.|+..
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 4455666777778888999999999999976655555543 22557888889998888888776553 33334333322
Q ss_pred EcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc-cccCCCH-HHHHHHHHhCCcCCcee
Q 011100 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR-VLDVGFE-EELRVVFQCLPKNRQTL 240 (493)
Q Consensus 163 ~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~i 240 (493)
.-..+ .....+.|-++|.|.|...+.... .|+.+++|||||||. -++.++. ..+..++...+.+.++|
T Consensus 130 iRfe~------~~s~~Trik~mTdGiLlrei~~D~----~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 130 IRFES------KVSPRTRIKVMTDGILLREIQNDP----LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred EEeec------cCCCCceeEEeccHHHHHHHhhCc----ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 22111 124578999999999999988763 489999999999995 4444443 33344566666678999
Q ss_pred eeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEec-CCc-chHHHHHHHHhhhhcCCCeEEEEecchhhHH
Q 011100 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP-KNV-KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCH 318 (493)
Q Consensus 241 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~ 318 (493)
.||||+. .+.+...+.+.+.+...... -.+...|.... .+. -...+...+......+.+.+|||.+...+.+
T Consensus 200 imSATld--~~rfs~~f~~apvi~i~GR~----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~ 273 (845)
T COG1643 200 IMSATLD--AERFSAYFGNAPVIEIEGRT----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIE 273 (845)
T ss_pred EEecccC--HHHHHHHcCCCCEEEecCCc----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHH
Confidence 9999995 66777777766554432221 12333332222 122 2344555566666666789999999999999
Q ss_pred HHHHHHHh--c--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCC-----------
Q 011100 319 LLSLLLEE--L--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR----------- 383 (493)
Q Consensus 319 ~l~~~l~~--~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~----------- 383 (493)
..++.|.+ + ...+..+||.|+.+++..+++.-..|..+|++||++++.+|.|+++.+||+-+.-+
T Consensus 274 ~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~ 353 (845)
T COG1643 274 RTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLT 353 (845)
T ss_pred HHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCce
Confidence 99999997 3 46788999999999999998888888888999999999999999999999855433
Q ss_pred -------CCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 384 -------YPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 384 -------s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
|-++..||.|||||. .+|.||-+|+.++..
T Consensus 354 ~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 354 RLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred eeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 345778999999997 679999999986543
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=4.6e-27 Score=205.20 Aligned_cols=165 Identities=36% Similarity=0.535 Sum_probs=142.0
Q ss_pred cHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEE
Q 011100 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVV 163 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 163 (493)
||+|.++++.+.+++++++.||||+|||++|.++++..+... ...+++|++|+++|+.|+.+.+..++...++++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999998876 4558999999999999999999999988788999999
Q ss_pred cCCCHH-HHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC--cCCcee
Q 011100 164 GGMDLL-TQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQTL 240 (493)
Q Consensus 164 g~~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--~~~~~i 240 (493)
|+.... .....+..+++|+|+||+++..++.... ..+.++++||+||+|.+....+...+..++..+. .+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEE
Confidence 998865 3334445679999999999999998742 2456699999999999998888888888888874 358999
Q ss_pred eeeecccchHHH
Q 011100 241 LFSATMTSDLQT 252 (493)
Q Consensus 241 ~~SAT~~~~~~~ 252 (493)
++|||++..++.
T Consensus 157 ~~SAT~~~~~~~ 168 (169)
T PF00270_consen 157 LLSATLPSNVEK 168 (169)
T ss_dssp EEESSSTHHHHH
T ss_pred EEeeCCChhHhh
Confidence 999999966654
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.4e-25 Score=216.98 Aligned_cols=311 Identities=17% Similarity=0.219 Sum_probs=215.8
Q ss_pred cHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH-HhccCCCceEEEE
Q 011100 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK-ALGSGLHLRCEVV 162 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~ 162 (493)
+.+-.+.+..+.+++-++|.|+||||||+..--.++..-... ..++.+.-|.|.-|..++.+.. ++...+|-.|+..
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~--~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS--SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc--CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 444556777778888899999999999986444333332222 2348888899988888876664 3444444444332
Q ss_pred EcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc-cccCC-CHHHHHHHHHhCCcCCcee
Q 011100 163 VGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR-VLDVG-FEEELRVVFQCLPKNRQTL 240 (493)
Q Consensus 163 ~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~-~~~~~-~~~~~~~i~~~~~~~~~~i 240 (493)
.--. ......+.|.++|.|.|+..+...+ .|+.+++||+||||. -+..+ ....++.+++. ++..+++
T Consensus 131 IRFe------d~ts~~TrikymTDG~LLRE~l~Dp----~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklI 199 (674)
T KOG0922|consen 131 IRFE------DSTSKDTRIKYMTDGMLLREILKDP----LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLI 199 (674)
T ss_pred EEec------ccCCCceeEEEecchHHHHHHhcCC----ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEE
Confidence 2211 1123468999999999988777653 478999999999995 11111 11223333333 3467899
Q ss_pred eeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC-CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHH
Q 011100 241 LFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK-NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319 (493)
Q Consensus 241 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~ 319 (493)
+||||+. .+.+...+.+.+.+..... .-.+...|..-+. +.-...+..+++.+.....+.+|||....++.+.
T Consensus 200 imSATld--a~kfS~yF~~a~i~~i~GR----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 200 IMSATLD--AEKFSEYFNNAPILTIPGR----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred EEeeeec--HHHHHHHhcCCceEeecCC----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 9999995 6777777776554432211 2223333333221 2223334445555555666889999999999999
Q ss_pred HHHHHHhcC----C----ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC----------
Q 011100 320 LSLLLEELD----Q----EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI---------- 381 (493)
Q Consensus 320 l~~~l~~~~----~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~---------- 381 (493)
+++.|.+.- - -+..+||.|+.+++.+++..-..|..+|+++|++++..+.|+++..||+-++
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 999998751 1 2467999999999999999888899999999999999999999999997443
Q ss_pred --------CCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 382 --------PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 382 --------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
|-|..+-.||.|||||. .+|.|+-+|+.++.+
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAYD 393 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHHh
Confidence 33455678999999997 569999999988764
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.1e-25 Score=226.16 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=109.1
Q ss_pred cchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCC
Q 011100 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366 (493)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 366 (493)
.+...+...+......+ .++||||+|+..++.++..|...++.+.++|+ .+.+|+..+..|+.+...|+|||++++|
T Consensus 582 eK~~Ali~~I~~~~~~g-rpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKG-QPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHhhCC-CCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 34455555555544444 89999999999999999999999999999997 6889999999999999999999999999
Q ss_pred CCCCC---CcC-----eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 367 GLDIP---TVD-----LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 367 Gidi~---~v~-----~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
|+||+ +|. +||+++.|.|...|.|++||+||.|.+|.++.|++.+|.
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999 554 459999999999999999999999999999999998774
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=2.2e-25 Score=234.20 Aligned_cols=326 Identities=21% Similarity=0.192 Sum_probs=213.5
Q ss_pred CCCcHHHHhhhhhhhcC---C-cEEEEccCCCCchhHhHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHhccCC
Q 011100 81 RRPTPVQTHCIPKILEG---K-DVLGLAQTGSGKTAAFALPILHRLAE-DPYGVLALVITPTRELAYQLAEQFKALGSGL 155 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~---~-~~lv~a~TGsGKTl~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 155 (493)
...++.|..++..+... . .+++.||||+|||.+.+.+++..+.. .....+++++.|++.+++++++.+...+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 33589999999887754 4 68899999999999999999888777 3457789999999999999999999877654
Q ss_pred CceEEEEEcCCCHHHHHHH-----h---------cCCCcEEEECcchHHHHHhcCCCCCCcc--CCcceEeecccccccc
Q 011100 156 HLRCEVVVGGMDLLTQAKS-----L---------MNRPHVVIATPGRIKVLLEEDPDIPPVF--SRTKFLVLDEADRVLD 219 (493)
Q Consensus 156 ~~~~~~~~g~~~~~~~~~~-----~---------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l--~~~~~vViDEah~~~~ 219 (493)
+......+|.......... . ..-..+.++||..+.........+.. + -..+.+|+||+|.+.+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-LALLLTSLVILDEVHLYAD 352 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-HHHHHhhchhhccHHhhcc
Confidence 4433322333221111100 0 00123444554443332111111110 1 1235799999998877
Q ss_pred CCCHHHHHHHHHh-CCcCCceeeeeecccchHHHHHHHhcCCceEEecccccc---ccccceEEEEEecCCcchH---HH
Q 011100 220 VGFEEELRVVFQC-LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFK---TVETLKQQYIFIPKNVKDV---YL 292 (493)
Q Consensus 220 ~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~l 292 (493)
......+..++.. ...+..+++||||+|..+...+................. ....+.+... ...... ..
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~ 429 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER---VDVEDGPQEEL 429 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc---hhhhhhhhHhh
Confidence 6322333333322 234778999999999988887766655443332211100 0000000000 000111 11
Q ss_pred HHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhh----cCCCeEEEEcCCCCCCC
Q 011100 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK----SGQATILLATDVASRGL 368 (493)
Q Consensus 293 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~~~Gi 368 (493)
......-.. ..++++|.|||+..|..++..|+..+..+..+||.+...+|.+.+..+. .+...|+|||++++.|+
T Consensus 430 ~~~~~~~~~-~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 430 IELISEEVK-EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhcchhhhc-cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 222222222 2378999999999999999999998888999999999999998887654 47889999999999999
Q ss_pred CCCCcCeEEEecCCCCCCcceeeccccccCC--CCccEEEEEecccHH
Q 011100 369 DIPTVDLVLNYDIPRYPRDYVHRVGRTARAG--RGGLAVSFVTQNDVD 414 (493)
Q Consensus 369 di~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g--~~g~~~~~~~~~~~~ 414 (493)
|+ +.+++|--=.| +.+.+||+||++|.| ..|..+++.......
T Consensus 509 Di-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 509 DI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred cc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 99 69988865555 789999999999999 567777776654433
No 107
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=1.4e-24 Score=213.01 Aligned_cols=318 Identities=20% Similarity=0.234 Sum_probs=228.7
Q ss_pred CCCcHHHHhhhhhhhc----CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 81 RRPTPVQTHCIPKILE----GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
..+++||.+.+.++.. |-+.|+...+|.|||+..+..+..........+.-||+||...|. .|.+++.++++ +
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P--~ 242 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTP--S 242 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCC--C
Confidence 3589999999998653 678999999999999875443332222122234579999998775 58999999987 5
Q ss_pred ceEEEEEcCCCHHHHHH---HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC
Q 011100 157 LRCEVVVGGMDLLTQAK---SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 233 (493)
+++.+++|+........ ...+..+|+|+|++....--.-.. --..+++||||||++.+.. ..+..+++.+
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk-----~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f 315 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLK-----KFNWRYLVIDEAHRIKNEK--SKLSKILREF 315 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHh-----cCCceEEEechhhhhcchh--hHHHHHHHHh
Confidence 88899999875443322 123578999999998754322111 1246799999999998864 4455666665
Q ss_pred CcCCceeeeeecccc-hHHH------------------------------------------------------------
Q 011100 234 PKNRQTLLFSATMTS-DLQT------------------------------------------------------------ 252 (493)
Q Consensus 234 ~~~~~~i~~SAT~~~-~~~~------------------------------------------------------------ 252 (493)
... ..+++|+||-. .+..
T Consensus 316 ~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred ccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 433 35677888631 1110
Q ss_pred ---------------------------------------------HHHHhcCCceEEeccccccccccceEEEEEecCCc
Q 011100 253 ---------------------------------------------LLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287 (493)
Q Consensus 253 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
.++.+.+.|+.+.... ........-..+....
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~e---Pg~pyttdehLv~nSG 471 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAE---PGPPYTTDEHLVTNSG 471 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCC---CCCCCCcchHHHhcCc
Confidence 0111222222222111 1011111112233556
Q ss_pred chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCC---CeEEEEcCCC
Q 011100 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ---ATILLATDVA 364 (493)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~ 364 (493)
+...|..++..+...+ .++|||.......+.+..++.-.++..+.+.|.++.++|...++.|.... .-.|++|.+.
T Consensus 472 Km~vLDkLL~~Lk~~G-hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385|consen 472 KMLVLDKLLPKLKEQG-HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred ceehHHHHHHHHHhCC-CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc
Confidence 7788888999888887 89999999999999999999999999999999999999999999998643 4578899999
Q ss_pred CCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCcc--EEEEEecccH
Q 011100 365 SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL--AVSFVTQNDV 413 (493)
Q Consensus 365 ~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~--~~~~~~~~~~ 413 (493)
+.|||+..+|+||.||..|+|..-+|...||+|.|+... ++-|++.+.+
T Consensus 551 GLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 551 GLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred ccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 999999999999999999999999999999999998655 4556666643
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.3e-23 Score=209.03 Aligned_cols=288 Identities=24% Similarity=0.299 Sum_probs=197.2
Q ss_pred HHHHHHHc-CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 011100 71 AVQTCKEL-GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 71 l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
+.+.+++. |+ .|+..|+--...+..|+++-+.||||.|||.--++..+....+ +.+++||+||..|+.|+++.+.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k---gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK---GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc---CCeEEEEecCHHHHHHHHHHHH
Confidence 33444444 55 7999999999999999999999999999996544333332222 6789999999999999999999
Q ss_pred HhccCCC-ceEEE-EEcCCCHHHHH---H-HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC---
Q 011100 150 ALGSGLH-LRCEV-VVGGMDLLTQA---K-SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV--- 220 (493)
Q Consensus 150 ~~~~~~~-~~~~~-~~g~~~~~~~~---~-~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~--- 220 (493)
.+....+ ..+.. .++.....+.. . ...++.||+|+|.+-|...++.... -+++++++|.+|.++..
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-----~kFdfifVDDVDA~LkaskN 221 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-----LKFDFIFVDDVDAILKASKN 221 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-----cCCCEEEEccHHHHHhcccc
Confidence 9986655 44433 44443332222 2 2246799999998777666654321 26789999999977643
Q ss_pred --------CCHHH-------HHHHHHh------------------------CCcCCceeeeeecccchH--HHHHHHhcC
Q 011100 221 --------GFEEE-------LRVVFQC------------------------LPKNRQTLLFSATMTSDL--QTLLELSAN 259 (493)
Q Consensus 221 --------~~~~~-------~~~i~~~------------------------~~~~~~~i~~SAT~~~~~--~~~~~~~~~ 259 (493)
||... +..+... -.+..+++..|||..+.- ..+.+..++
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg 301 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG 301 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC
Confidence 22221 0111111 113457899999976522 222222222
Q ss_pred CceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecc---hhhHHHHHHHHHhcCCceeeccC
Q 011100 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVST---CRSCHLLSLLLEELDQEAVALHS 336 (493)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~---~~~~~~l~~~l~~~~~~~~~~~~ 336 (493)
+.+........++...|... .....+..+++.+.. ..|||++. ++.++.++++|+..|+++..+|+
T Consensus 302 ----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~----GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 302 ----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGD----GGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred ----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhCC----CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 12222333344444444433 344455566665543 47999999 99999999999999999999998
Q ss_pred CCCHHHHHHHHHHhhcCCCeEEEEcC----CCCCCCCCCC-cCeEEEecCCC
Q 011100 337 FKSQSQRLSALHRFKSGQATILLATD----VASRGLDIPT-VDLVLNYDIPR 383 (493)
Q Consensus 337 ~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~~Gidi~~-v~~Vi~~~~p~ 383 (493)
. ....++.|..|++++||... ++-||+|+|. ++++|.++.|+
T Consensus 371 ~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 2 36689999999999999764 7899999997 78999999983
No 109
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.4e-24 Score=208.08 Aligned_cols=314 Identities=17% Similarity=0.187 Sum_probs=218.7
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH-HHhccCCCc
Q 011100 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF-KALGSGLHL 157 (493)
Q Consensus 79 g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~-~~~~~~~~~ 157 (493)
..-..+++-.+.+.++.+++-+||.|.||||||...-..+...=.. ..+.++-+.-|.|.-|..++.++ .+++..+|-
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 4445677888888899999999999999999998633332222111 22445778889998888887655 445444443
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc-cccCCCHHHHHHHHHhCCcC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR-VLDVGFEEELRVVFQCLPKN 236 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~-~~~~~~~~~~~~i~~~~~~~ 236 (493)
.|+.-+-- .......+-|-++|.|+|+.-+...+ .|..++++||||||. .+..+..-.+-.-+...+++
T Consensus 341 eVGYsIRF------EdcTSekTvlKYMTDGmLlREfL~ep----dLasYSViiiDEAHERTL~TDILfgLvKDIar~Rpd 410 (902)
T KOG0923|consen 341 EVGYSIRF------EDCTSEKTVLKYMTDGMLLREFLSEP----DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPD 410 (902)
T ss_pred ccceEEEe------ccccCcceeeeeecchhHHHHHhccc----cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCc
Confidence 33222111 11123456788999999988776653 478999999999994 33322211122222334578
Q ss_pred CceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC-cchHHHHHHHHhhhhcCCCeEEEEecchh
Q 011100 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN-VKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315 (493)
Q Consensus 237 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~lVf~~~~~ 315 (493)
..++++|||+. .+++...+...+++......+ .+...|...|+. .-...+..+++.+.....+.+|||....+
T Consensus 411 LKllIsSAT~D--AekFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 411 LKLLISSATMD--AEKFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred ceEEeeccccC--HHHHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 88999999994 677888777777665433222 222333333332 22333444555555666688999999999
Q ss_pred hHHHHHHHHHhc---------CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCC---
Q 011100 316 SCHLLSLLLEEL---------DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR--- 383 (493)
Q Consensus 316 ~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~--- 383 (493)
..+...+.|.++ .+-++.+|+.++.+.+..+++.-..|..+|++||++++..+.|+++.+||+-++-+
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ns 564 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNS 564 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccC
Confidence 888777777653 34578899999999999999999999999999999999999999999999855432
Q ss_pred ---------------CCCcceeeccccccCCCCccEEEEEec
Q 011100 384 ---------------YPRDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 384 ---------------s~~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
|..+-.||+|||||.| +|.|+-+|+.
T Consensus 565 ynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 565 YNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 3456689999999985 5999999984
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.6e-23 Score=207.98 Aligned_cols=320 Identities=22% Similarity=0.200 Sum_probs=224.6
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+. |+++|.-..-.++.| -|+.+.||+|||+++.+|++..... |..+.|++|+..||.|-++.+..++..+|+
T Consensus 75 lg~r-~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCCC-cchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 5665 999999988888877 4789999999999999999988777 777999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-----HHHHhcCCCCCCccCCcceEeeccccccc-cCC----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-----KVLLEEDPDIPPVFSRTKFLVLDEADRVL-DVG---------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~vViDEah~~~-~~~---------- 221 (493)
++.++.++....+....+ .+||+++|..-+ .+.+..... ......+.++||||+|.++ |..
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~-~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVA-DLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChH-hhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 999999988765544443 689999998754 222211111 1234668899999999765 200
Q ss_pred ----CHHHHHHHHHhCCc--------------------------------------------------------------
Q 011100 222 ----FEEELRVVFQCLPK-------------------------------------------------------------- 235 (493)
Q Consensus 222 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 235 (493)
....+..+...+..
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00000011111100
Q ss_pred --------------------------------------------------------CCceeeeeecccchHHHHHHHhcC
Q 011100 236 --------------------------------------------------------NRQTLLFSATMTSDLQTLLELSAN 259 (493)
Q Consensus 236 --------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~ 259 (493)
...+.+||+|.......+...+.-
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 024667777776666666655544
Q ss_pred CceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCC
Q 011100 260 KAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339 (493)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 339 (493)
....+. ...+....-....++.....+...+..-+......+ .|+||.|.+++..+.++..|.+.+++..++++.-.
T Consensus 386 ~Vv~IP--tnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~G-rPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 GVSVIP--PNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETG-QPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred cEEECC--CCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 332221 111111111112233333444555555555555555 89999999999999999999999999999998644
Q ss_pred HHHHHHHHHHhhcC-CCeEEEEcCCCCCCCCCC---------------CcCeEEEecCCCCCCcceeeccccccCCCCcc
Q 011100 340 QSQRLSALHRFKSG-QATILLATDVASRGLDIP---------------TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL 403 (493)
Q Consensus 340 ~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~---------------~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~ 403 (493)
. ++..+-. ..| .-.|.|||++++||.||. +=-+||....+.|...-.|..||+||.|.+|.
T Consensus 463 ~--~EA~IIa-~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 A--EEARIIA-EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred H--hHHHHHH-hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 3 3322211 234 457999999999999996 12379999999999888999999999999999
Q ss_pred EEEEEeccc
Q 011100 404 AVSFVTQND 412 (493)
Q Consensus 404 ~~~~~~~~~ 412 (493)
+..|++-+|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999998776
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=2.7e-23 Score=213.65 Aligned_cols=132 Identities=22% Similarity=0.321 Sum_probs=114.5
Q ss_pred chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Q 011100 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367 (493)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 367 (493)
....+...+......+ .++||||+++..++.++..|.+.|+.+..+||+++..+|..++..|+.|++.|||||+.+++|
T Consensus 427 qi~~Ll~eI~~~~~~g-~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 427 QVDDLLSEIRQRVARN-ERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred hHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 3444455554444444 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEEec-----CCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHH
Q 011100 368 LDIPTVDLVLNYD-----IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421 (493)
Q Consensus 368 idi~~v~~Vi~~~-----~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 421 (493)
+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|++..+......+.+
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999999988 799999999999999997 6899999999876554444443
No 112
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.92 E-value=5.6e-23 Score=211.32 Aligned_cols=320 Identities=19% Similarity=0.217 Sum_probs=228.1
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH-HhccCCCceEE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK-ALGSGLHLRCE 160 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~ 160 (493)
..+..+.+.+..+.+++.+++.|.||+|||+.....++......+..+++++.-|.|--|..+++++. +.+...|-.|+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 45788889999999999999999999999999888888887666567788888899988888887764 45555554444
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc-cccCCCHHHHHHHHHhCCcCCce
Q 011100 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR-VLDVGFEEELRVVFQCLPKNRQT 239 (493)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~-~~~~~~~~~~~~i~~~~~~~~~~ 239 (493)
.-.+..+. ......+++||.|.|+..+... ..+.++.++|+||+|. -.+.+|.-.+...+-...++.++
T Consensus 253 Yqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 253 YQVRLESK------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred EEEeeecc------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 43333221 1234789999999999988774 3478999999999995 33444554444444444578899
Q ss_pred eeeeecccchHHHHHHHhcCCceEEeccccccc---------------cccceEE------------EEEecCCcchHHH
Q 011100 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKT---------------VETLKQQ------------YIFIPKNVKDVYL 292 (493)
Q Consensus 240 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~------------~~~~~~~~~~~~l 292 (493)
++||||+. .+.+...+.+.+.+......+.. .....+. ......+.+...+
T Consensus 323 ILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 323 ILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred EEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 99999996 44455555444433221111000 0000000 0011112344445
Q ss_pred HHHHHhhhhcC-CCeEEEEecchhhHHHHHHHHHhc-------CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCC
Q 011100 293 MHVLSKMEDMG-IRSAIIFVSTCRSCHLLSLLLEEL-------DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA 364 (493)
Q Consensus 293 ~~~~~~~~~~~-~~~~lVf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 364 (493)
..++..+.... .+.+|||.++...+..+...|... .+-+..+|+.|+..++..++..-..|..+|+++|+++
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 55555443333 578999999999999999988642 2456789999999999999999999999999999999
Q ss_pred CCCCCCCCcCeEEEec--------CCCC----------CCcceeeccccccCCCCccEEEEEecccHH
Q 011100 365 SRGLDIPTVDLVLNYD--------IPRY----------PRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 365 ~~Gidi~~v~~Vi~~~--------~p~s----------~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
+.+|.|++|-+||+.+ +-.+ ...-.||.|||||. .+|.||.+++....+
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 9999999999999844 3332 34557999999997 889999999876543
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.2e-22 Score=206.90 Aligned_cols=320 Identities=23% Similarity=0.261 Sum_probs=220.5
Q ss_pred CCCcHHHHhhhhhhhcC----CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 81 RRPTPVQTHCIPKILEG----KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~----~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
..+++-|..++..+.+. ...++.|.||||||.+|+-.+...+.+ |..+||++|-.+|..|+..+|+..+ |
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHHh---C
Confidence 35788999999998766 569999999999999999999888888 7889999999999999999999887 5
Q ss_pred ceEEEEEcCCCHHHHH----HHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc--cC---CCHHHHH
Q 011100 157 LRCEVVVGGMDLLTQA----KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL--DV---GFEEELR 227 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~----~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~--~~---~~~~~~~ 227 (493)
.++..++++.+..+.. ....+...|+||| .+..+..+.++++|||||=|.-. +. .+...--
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt----------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv 340 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT----------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV 340 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEe----------chhhcCchhhccEEEEeccccccccCCcCCCcCHHHH
Confidence 7888888877654433 3335789999999 22235668999999999999532 11 1222222
Q ss_pred HHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCc------chHHHHHHHHhhhh
Q 011100 228 VVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV------KDVYLMHVLSKMED 301 (493)
Q Consensus 228 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ 301 (493)
.+++.-..+.++++-|||+. ++.+.....+....................++.+.... -...+...+.....
T Consensus 341 A~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~ 418 (730)
T COG1198 341 AVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE 418 (730)
T ss_pred HHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh
Confidence 23333345788999999985 77777765555555555554442222233333222211 11344444444444
Q ss_pred cCCCeEEEEecchhh------------------------------------------------------------HHHHH
Q 011100 302 MGIRSAIIFVSTCRS------------------------------------------------------------CHLLS 321 (493)
Q Consensus 302 ~~~~~~lVf~~~~~~------------------------------------------------------------~~~l~ 321 (493)
.+ .++|+|.|.+-- +++++
T Consensus 419 ~g-eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 419 RG-EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred cC-CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 44 678888775332 23444
Q ss_pred HHHHhc--CCceeeccCCCCHHH--HHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCC--CCC----------
Q 011100 322 LLLEEL--DQEAVALHSFKSQSQ--RLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIP--RYP---------- 385 (493)
Q Consensus 322 ~~l~~~--~~~~~~~~~~~~~~~--r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p--~s~---------- 385 (493)
+.|... +..++.+.++..... -+..+..|.+|+.+|||.|.+++.|.|+|++..|...|.. ...
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 444433 344566666654433 4577899999999999999999999999999987654433 222
Q ss_pred CcceeeccccccCCCCccEEEEEecccHHHHHHH
Q 011100 386 RDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 386 ~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 419 (493)
..+.|-.||+||.+.+|.+++-....|-..+..+
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 2357899999999999999887776665544444
No 114
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=9.9e-23 Score=204.46 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=121.4
Q ss_pred CcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCC-CceEEE
Q 011100 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL-HLRCEV 161 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~ 161 (493)
|-.||.+.+..+-.+.+.+|.|||.+|||.+--.++=..+... ....+|+++|+++|++|+...+...+... -.+...
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc-CCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 8899999999999999999999999999987666555544443 35579999999999999998887776322 223333
Q ss_pred EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceee
Q 011100 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241 (493)
Q Consensus 162 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 241 (493)
+.|......+.. .-.|+|+|+-|+.+..++...+....+...++++|+||+|.+.+..-+..++.++..+ .+.+++
T Consensus 591 l~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~ 666 (1330)
T KOG0949|consen 591 LLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLV 666 (1330)
T ss_pred hHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCeeE
Confidence 444333211111 1268999999999998887744445567899999999999998877667777776665 466999
Q ss_pred eeecccc
Q 011100 242 FSATMTS 248 (493)
Q Consensus 242 ~SAT~~~ 248 (493)
+|||+.+
T Consensus 667 LSATigN 673 (1330)
T KOG0949|consen 667 LSATIGN 673 (1330)
T ss_pred EecccCC
Confidence 9999876
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=2.3e-21 Score=208.25 Aligned_cols=333 Identities=21% Similarity=0.298 Sum_probs=205.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhh----hhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIP----KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
+++.+.+.+...||. +++.|.+.+. .+.+++++++.||||+|||++|++|++..... +.+++|.+||++|..
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---EKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---CCeEEEEeCcHHHHH
Confidence 344667777778887 8999998666 45568899999999999999999999886652 558999999999999
Q ss_pred HHHH-HHHHhccCCC--ceEEEEEcCCCHHH---------------H--------------------------------H
Q 011100 143 QLAE-QFKALGSGLH--LRCEVVVGGMDLLT---------------Q--------------------------------A 172 (493)
Q Consensus 143 q~~~-~~~~~~~~~~--~~~~~~~g~~~~~~---------------~--------------------------------~ 172 (493)
|+.. .+..+.+.++ +++..+.|+.++.- . +
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~ 386 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFF 386 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhH
Confidence 9865 4555544333 67777776543100 0 0
Q ss_pred H------------------------HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-------
Q 011100 173 K------------------------SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG------- 221 (493)
Q Consensus 173 ~------------------------~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~------- 221 (493)
. .....++|+|+.+.-|...+.... ..+...+++||||||++.+..
T Consensus 387 ~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~---~ilp~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 387 AQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP---ELFPSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred HHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc---ccCCCCCEEEEECcchHHHHHHHHhcce
Confidence 0 001124899999887766554332 234556899999999876410
Q ss_pred C-----HHH----------------------------------------------------------------HHHHHHh
Q 011100 222 F-----EEE----------------------------------------------------------------LRVVFQC 232 (493)
Q Consensus 222 ~-----~~~----------------------------------------------------------------~~~i~~~ 232 (493)
+ ... +...+..
T Consensus 464 ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 543 (850)
T TIGR01407 464 LDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLA 543 (850)
T ss_pred eCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0 000 0000000
Q ss_pred -----------C-------------------------------------CcCCceeeeeecccc--hHHHHHHHhc-CCc
Q 011100 233 -----------L-------------------------------------PKNRQTLLFSATMTS--DLQTLLELSA-NKA 261 (493)
Q Consensus 233 -----------~-------------------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~-~~~ 261 (493)
+ +....++++|||+.. ....+..... ...
T Consensus 544 ~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~ 623 (850)
T TIGR01407 544 LKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDV 623 (850)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcc
Confidence 0 011357899999873 2333433322 221
Q ss_pred eEEecccccccccc-ceEEEEEecCC-------cchH---HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC--
Q 011100 262 YFYEAYEGFKTVET-LKQQYIFIPKN-------VKDV---YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD-- 328 (493)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~---~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~-- 328 (493)
...... ..+-. ..+..+.++.. .... .+...+..+.....+++|||++|.+..+.++..|....
T Consensus 624 ~~~~~~---~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~ 700 (850)
T TIGR01407 624 HFNTIE---PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEF 700 (850)
T ss_pred ccceec---CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccc
Confidence 111111 11111 11112222211 1111 23334444444445789999999999999999997521
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC--eEEEecCCCC-C--------------------
Q 011100 329 QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD--LVLNYDIPRY-P-------------------- 385 (493)
Q Consensus 329 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~--~Vi~~~~p~s-~-------------------- 385 (493)
....++..+.. ..|..+++.|++++..||++|+.+++|||+|+.. +||...+|.. +
T Consensus 701 ~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f 779 (850)
T TIGR01407 701 EGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPF 779 (850)
T ss_pred cCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCch
Confidence 12223333333 5788899999999999999999999999999866 5677777642 1
Q ss_pred ---------CcceeeccccccCCCCccEEEEEec
Q 011100 386 ---------RDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 386 ---------~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
..+.|.+||.-|...+.-++++++.
T Consensus 780 ~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 780 YDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred HHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 1236889999998665444555544
No 116
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.8e-23 Score=199.54 Aligned_cols=310 Identities=18% Similarity=0.204 Sum_probs=207.3
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH-hccCCCce
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA-LGSGLHLR 158 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~ 158 (493)
+-..+..+.+.+..|.+++-++|.|.||||||....-.++.. .......+-+.-|.|.-|..+++.+.. +...+|-.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed--GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED--GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc--ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 344566777888888888899999999999998644333322 112234566667999998888877654 43333433
Q ss_pred EEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc-cccCCCHHHHHHHHHhCCcCC
Q 011100 159 CEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR-VLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 159 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~-~~~~~~~~~~~~i~~~~~~~~ 237 (493)
++..+- ++. .....+.|-++|.|.|+.-.-.. ..|..+++||+||||. -++.+..--+....-.-..+.
T Consensus 432 VGYsIR----FEd--vT~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 432 VGYSIR----FED--VTSEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred cceEEE----eee--cCCCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 322111 110 11245678899999987644333 3478899999999995 333322211222222223578
Q ss_pred ceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHH----HHHhhhhcCCCeEEEEecc
Q 011100 238 QTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH----VLSKMEDMGIRSAIIFVST 313 (493)
Q Consensus 238 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~lVf~~~ 313 (493)
.+|.+|||+. .+++...+.+.+.+......+ .+...|. ...-..++.. .+........+.+|||...
T Consensus 502 KliVtSATm~--a~kf~nfFgn~p~f~IpGRTy----PV~~~~~---k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 502 KLIVTSATMD--AQKFSNFFGNCPQFTIPGRTY----PVEIMYT---KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred eEEEeecccc--HHHHHHHhCCCceeeecCCcc----ceEEEec---cCchHHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 8999999994 778888888766654332221 1112222 2223333333 3333444455789999998
Q ss_pred hhhHHHHHHH----HHhc------CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC--
Q 011100 314 CRSCHLLSLL----LEEL------DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI-- 381 (493)
Q Consensus 314 ~~~~~~l~~~----l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~-- 381 (493)
.+..+..+.. |.+. ++.+..+++.|+.+-+.+++.....|..+++|||++++..+.+|++.+||..+.
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 8766555444 4333 567889999999999999999888999999999999999999999999998542
Q ss_pred ----------------CCCCCcceeeccccccCCCCccEEEEEecc
Q 011100 382 ----------------PRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411 (493)
Q Consensus 382 ----------------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 411 (493)
|-|-+.--||.|||||. .+|.|+-+|+..
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 34556668999999997 569999999874
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=3.1e-22 Score=205.17 Aligned_cols=321 Identities=19% Similarity=0.183 Sum_probs=218.7
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|.. |+++|.-.--.+.+| -|+.+.||+|||+++.+|++..... |..+.|++|+..||.|-++.+..++..+|+
T Consensus 79 lGm~-~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 79 MGMR-HFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred hCCC-cchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 5654 888887665555544 7899999999999999999887777 777999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCC---CCCccCCcceEeeccccccc-cCC-----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPD---IPPVFSRTKFLVLDEADRVL-DVG----------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~vViDEah~~~-~~~----------- 221 (493)
++.++.++.........+ .++|+++|..-+ .+.|+.... -......+.++||||+|.++ |..
T Consensus 153 ~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~ 230 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAE 230 (913)
T ss_pred EEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCc
Confidence 999999988766555444 489999998775 222222110 01234778999999999765 210
Q ss_pred ----CHHHHHHHHHhCCc--------------------------------------------------------------
Q 011100 222 ----FEEELRVVFQCLPK-------------------------------------------------------------- 235 (493)
Q Consensus 222 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 235 (493)
....+..+...+..
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i 310 (913)
T PRK13103 231 DSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHV 310 (913)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHH
Confidence 00001111110000
Q ss_pred -------------------------------------------------------------------------CCceeee
Q 011100 236 -------------------------------------------------------------------------NRQTLLF 242 (493)
Q Consensus 236 -------------------------------------------------------------------------~~~~i~~ 242 (493)
...+.+|
T Consensus 311 ~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGM 390 (913)
T PRK13103 311 YAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGM 390 (913)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccC
Confidence 0134455
Q ss_pred eecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHH
Q 011100 243 SATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSL 322 (493)
Q Consensus 243 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~ 322 (493)
|+|.......+...+.-....+.. ..+....-....++.....+...+..-+..+...+ .|+||-+.|++..+.++.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPT--nkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~G-rPVLVGT~SVe~SE~ls~ 467 (913)
T PRK13103 391 TGTADTEAFEFRQIYGLDVVVIPP--NKPLARKDFNDLVYLTAEEKYAAIITDIKECMALG-RPVLVGTATIETSEHMSN 467 (913)
T ss_pred CCCCHHHHHHHHHHhCCCEEECCC--CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCHHHHHHHHH
Confidence 555544444444444332222211 11111111112233334445555666666666655 899999999999999999
Q ss_pred HHHhcCCceeeccCCCCHHHHHHHHHHhhcC-CCeEEEEcCCCCCCCCCC------------------------------
Q 011100 323 LLEELDQEAVALHSFKSQSQRLSALHRFKSG-QATILLATDVASRGLDIP------------------------------ 371 (493)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~------------------------------ 371 (493)
.|...+++..++++.-. +++..+-. ..| .-.|.|||++++||.||.
T Consensus 468 ~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (913)
T PRK13103 468 LLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKR 544 (913)
T ss_pred HHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhH
Confidence 99999999999888644 33332222 334 457999999999999994
Q ss_pred -------CcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEeccc
Q 011100 372 -------TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412 (493)
Q Consensus 372 -------~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~ 412 (493)
+=-+||-...+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 545 ~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 545 HQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12278888999998888999999999999999999998766
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=4.7e-21 Score=198.79 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=123.8
Q ss_pred chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Q 011100 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367 (493)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 367 (493)
....+...+......+ .++||||++...++.++..|...|+.+..+||+++..+|..++..|+.|.+.|+|||+.+++|
T Consensus 431 q~~~L~~~L~~~~~~g-~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 431 QVDDLLSEIRKRVAKG-ERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred cHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3444555554444444 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEEecC-----CCCCCcceeeccccccCCCCccEEEEEec---------ccHHHHHHHHHHhcCcccccccc
Q 011100 368 LDIPTVDLVLNYDI-----PRYPRDYVHRVGRTARAGRGGLAVSFVTQ---------NDVDLIHEIEAVVGKQLEEFECK 433 (493)
Q Consensus 368 idi~~v~~Vi~~~~-----p~s~~~y~qr~GR~gR~g~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 433 (493)
+|+|++++||++|. |.+..+|+||+||+||. ..|.|++|++. .+....++++..++......+..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 99999999999875 78889999999999996 78999999984 45667777777777777666544
Q ss_pred h
Q 011100 434 E 434 (493)
Q Consensus 434 ~ 434 (493)
.
T Consensus 589 ~ 589 (652)
T PRK05298 589 I 589 (652)
T ss_pred H
Confidence 3
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=3.1e-21 Score=200.90 Aligned_cols=303 Identities=20% Similarity=0.240 Sum_probs=179.0
Q ss_pred CcHHHHhhhhhhhc----------CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 83 PTPVQTHCIPKILE----------GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~----------~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
++.+|..|+..+.+ .+..+++++||||||++++..+...+ ......++|||+|+.+|..|+.+.|..+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 78899999987642 24699999999999988666554433 33446789999999999999999999885
Q ss_pred cCCCceEEEEEcCCCHHHHHHHh-cCCCcEEEECcchHHHHHhcCCCCCCccCCc-ceEeeccccccccCCCHHHHHHHH
Q 011100 153 SGLHLRCEVVVGGMDLLTQAKSL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVF 230 (493)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~-~~vViDEah~~~~~~~~~~~~~i~ 230 (493)
.. +. .+..+.......+ .....|+|+|.+++...+....... ..... -+||+||||+.... .....+.
T Consensus 318 ~~----~~--~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~-~~~~~~~lvIvDEaHrs~~~---~~~~~l~ 387 (667)
T TIGR00348 318 KD----CA--ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKF-PVDRKEVVVIFDEAHRSQYG---ELAKNLK 387 (667)
T ss_pred CC----CC--cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhcc-CCCCCCEEEEEEcCccccch---HHHHHHH
Confidence 32 11 1111221112222 2346899999999876443221000 11111 27999999986432 2222222
Q ss_pred HhCCcCCceeeeeecccchHH-HHHHHhc---CCce-EEeccccccccccceEEEEEec---------------------
Q 011100 231 QCLPKNRQTLLFSATMTSDLQ-TLLELSA---NKAY-FYEAYEGFKTVETLKQQYIFIP--------------------- 284 (493)
Q Consensus 231 ~~~~~~~~~i~~SAT~~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------- 284 (493)
..+ ++..+++|||||...-. .....+. +... .+.........-.....|....
T Consensus 388 ~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 388 KAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred hhC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 344 46789999999953211 0011111 1111 1111000000000000111000
Q ss_pred -CCcc------------------------hHHHHHHHHhhh---hcCCCeEEEEecchhhHHHHHHHHHhc-----CCce
Q 011100 285 -KNVK------------------------DVYLMHVLSKME---DMGIRSAIIFVSTCRSCHLLSLLLEEL-----DQEA 331 (493)
Q Consensus 285 -~~~~------------------------~~~l~~~~~~~~---~~~~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~ 331 (493)
.... ......++..+. .....+++|||.++..|..+...|.+. +...
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 0000 000011222211 111378999999999999999988765 2344
Q ss_pred eeccCCCCHH---------------------HHHHHHHHhhc-CCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcce
Q 011100 332 VALHSFKSQS---------------------QRLSALHRFKS-GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYV 389 (493)
Q Consensus 332 ~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~ 389 (493)
+++++..... ....++++|++ +.++|||+++++.+|+|.|.+++++..-+-.+ ..++
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~Ll 625 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLL 625 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHH
Confidence 5555543332 12367888976 68899999999999999999999988665554 4689
Q ss_pred eeccccccC
Q 011100 390 HRVGRTARA 398 (493)
Q Consensus 390 qr~GR~gR~ 398 (493)
|.+||+.|.
T Consensus 626 Qai~R~nR~ 634 (667)
T TIGR00348 626 QAIARTNRI 634 (667)
T ss_pred HHHHHhccc
Confidence 999999994
No 120
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=1.1e-22 Score=209.08 Aligned_cols=318 Identities=19% Similarity=0.227 Sum_probs=216.6
Q ss_pred CCCcHHHHhhhhhhh----cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 81 RRPTPVQTHCIPKIL----EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
.+++.||.+.+++++ .++++|++...|.|||+.-+..+-.........+..|||+|...+ ..|.+.|..+. +
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHh---h
Confidence 679999999999865 578999999999999965333222222222123348999998665 55888888886 6
Q ss_pred ceEEEEEcCCCHHHHHHHh----cC-----CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHH
Q 011100 157 LRCEVVVGGMDLLTQAKSL----MN-----RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~~----~~-----~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~ 227 (493)
+++++.+|........+.. .. ..+++++|++.++.--..... -...+++|||||++.+.. ..+-
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~-----i~w~~~~vDeahrLkN~~--~~l~ 517 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK-----IPWRYLLVDEAHRLKNDE--SKLY 517 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc-----CCcceeeecHHhhcCchH--HHHH
Confidence 8899999987665544433 12 478999999887543222111 134679999999998653 2222
Q ss_pred HHHHhCCcCCceeeeeeccc-chHHHHHHHh-------------------------------------------------
Q 011100 228 VVFQCLPKNRQTLLFSATMT-SDLQTLLELS------------------------------------------------- 257 (493)
Q Consensus 228 ~i~~~~~~~~~~i~~SAT~~-~~~~~~~~~~------------------------------------------------- 257 (493)
..+..+. -.+.+++|+||- +.++.+..+.
T Consensus 518 ~~l~~f~-~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveksl 596 (1373)
T KOG0384|consen 518 ESLNQFK-MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSL 596 (1373)
T ss_pred HHHHHhc-ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCC
Confidence 2244333 334577788863 2333332221
Q ss_pred ----------------------------------------------------cCCceEEeccccccccccceE------E
Q 011100 258 ----------------------------------------------------ANKAYFYEAYEGFKTVETLKQ------Q 279 (493)
Q Consensus 258 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~------~ 279 (493)
.+.++.+...... ....... .
T Consensus 597 p~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~-~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 597 PPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEK-ILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHH-HHHhhhhcchHHHH
Confidence 1111111000000 0000000 0
Q ss_pred EEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhc---CCCe
Q 011100 280 YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS---GQAT 356 (493)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~ 356 (493)
-..+....+...|..++..+...+ .++|||...+...+.|+++|...+++.-.+.|.+..+.|..+++.|.. .++-
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~G-HrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGG-HRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCC-ceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 000011222233444555566555 899999999999999999999999999999999999999999999986 4678
Q ss_pred EEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCcc--EEEEEeccc
Q 011100 357 ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL--AVSFVTQND 412 (493)
Q Consensus 357 vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~--~~~~~~~~~ 412 (493)
.|+||-+.+-|||+..+|+||+||..|+|..-+|.-.||+|.|+... +|-|++.+.
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 99999999999999999999999999999999999999999998755 477888764
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=4.5e-22 Score=198.74 Aligned_cols=302 Identities=17% Similarity=0.163 Sum_probs=195.2
Q ss_pred CCCCcHHHHhhhhhhhc----CC-cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 80 MRRPTPVQTHCIPKILE----GK-DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~----~~-~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
-..++.+|..||..+.+ |+ ..|+++.||+|||.++ +.++..|.+.....++|+|+-+++|+.|.+..+..+...
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 34589999999987653 44 3999999999999884 456777887777889999999999999999998888654
Q ss_pred CCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCC--CccCCcceEeeccccccccCCCHHHHHHHHHh
Q 011100 155 LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIP--PVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232 (493)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~--~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~ 232 (493)
+-.+..+.+... .+.+.|.|+|+..+...+....... .....+++|||||||+- ....+..|+..
T Consensus 242 -~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dY 308 (875)
T COG4096 242 -GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDY 308 (875)
T ss_pred -ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHH
Confidence 444444444322 1257999999999988776542222 22355899999999983 33445566666
Q ss_pred CCcCCceeeeeecccchHHHHH-HHh-cC-----------------CceEEecccc----ccccccc-------------
Q 011100 233 LPKNRQTLLFSATMTSDLQTLL-ELS-AN-----------------KAYFYEAYEG----FKTVETL------------- 276 (493)
Q Consensus 233 ~~~~~~~i~~SAT~~~~~~~~~-~~~-~~-----------------~~~~~~~~~~----~~~~~~~------------- 276 (493)
+..- ++++||||...+..-. ..+ .. .+..+.+... .-.+...
T Consensus 309 FdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~ 386 (875)
T COG4096 309 FDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE 386 (875)
T ss_pred HHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc
Confidence 5332 3455999876332211 111 11 1111110000 0000000
Q ss_pred -eEEEEEec------CCcchHHHHHHHHhh-hh--cC--CCeEEEEecchhhHHHHHHHHHhcC-----CceeeccCCCC
Q 011100 277 -KQQYIFIP------KNVKDVYLMHVLSKM-ED--MG--IRSAIIFVSTCRSCHLLSLLLEELD-----QEAVALHSFKS 339 (493)
Q Consensus 277 -~~~~~~~~------~~~~~~~l~~~~~~~-~~--~~--~~~~lVf~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~ 339 (493)
.+.|...+ -......+...+... .. .+ .+++||||.+..+|+.+...|.+.. --+..+.++-.
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 00000000 000112222333322 22 22 4789999999999999999998752 23455666443
Q ss_pred HHHHHHHHHHhhc--CCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCC
Q 011100 340 QSQRLSALHRFKS--GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399 (493)
Q Consensus 340 ~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g 399 (493)
.. ...++.|.. .-.+|.|+.+++..|||+|.|..+|.+..-.|...|.|++||+-|.-
T Consensus 467 ~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 467 QA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 33 345555654 44689999999999999999999999999999999999999999953
No 122
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.88 E-value=3.9e-20 Score=189.02 Aligned_cols=282 Identities=20% Similarity=0.167 Sum_probs=183.0
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+. |+++|.-+.-.+. +.-|+.+.||.|||+++.+|++..... |..|.||+++..||.+-++++..++..+|+
T Consensus 73 lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 5666 8899876654444 458999999999999999999755554 667999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-----HHHHhcCCCCCCccCCcceEeeccccccc-cCC----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-----KVLLEEDPDIPPVFSRTKFLVLDEADRVL-DVG---------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~vViDEah~~~-~~~---------- 221 (493)
.|+++.++.+....... -.+||+++|..-+ .+.+..... ......+.++||||+|.++ |..
T Consensus 147 svg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~-~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 147 TVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLS-DVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred ceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChH-HhhccccceeeeecchhheeccCCCceeccCCC
Confidence 99999888877555444 4579999998643 332221111 1234668899999999765 210
Q ss_pred -----CHHHHHHHHHhCCc-------------------------------------------------------------
Q 011100 222 -----FEEELRVVFQCLPK------------------------------------------------------------- 235 (493)
Q Consensus 222 -----~~~~~~~i~~~~~~------------------------------------------------------------- 235 (493)
.......+...+..
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00000000000000
Q ss_pred -------------------------------------------------------CCceeeeeecccchHHHHHHHhcCC
Q 011100 236 -------------------------------------------------------NRQTLLFSATMTSDLQTLLELSANK 260 (493)
Q Consensus 236 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 260 (493)
...+.+||+|.......+...+.-.
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 383 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE 383 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC
Confidence 0246777777766555555555433
Q ss_pred ceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCH
Q 011100 261 AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340 (493)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 340 (493)
...+....... .... ...++.....+...+..-+......+ .|+||-|.|++..+.++..|.+.+++..++++.-..
T Consensus 384 vv~IPtnkp~~-R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~g-rPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 384 VVCIPTHRPML-RKDL-PDLIYKDELSKWRAIADECLQMHQTG-RPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred EEECCCCCCcc-ceeC-CCeEEeCHHHHHHHHHHHHHHHHhcC-CCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 33322111111 1111 12223333334444444444455555 899999999999999999999999999999986432
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC
Q 011100 341 SQRLSALHRFKSGQATILLATDVASRGLDIP 371 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 371 (493)
.+++..+-.-.-..-.|.|||++++||.||.
T Consensus 461 ~~~EA~IIA~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHhcCCCCcEEEeccccCCCcCee
Confidence 2333322222222457999999999999983
No 123
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.2e-20 Score=189.64 Aligned_cols=321 Identities=21% Similarity=0.222 Sum_probs=219.0
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|.. |+++|.-..-.+..| -|+.+.||-|||+++.+|++-.... |..|-|++..--||..-++++..++..+|+
T Consensus 75 lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 75 LGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred hCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 5664 899998777666666 5899999999999999999866665 666889999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCCC---CCccCCcceEeeccccccc-cCC-----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDI---PPVFSRTKFLVLDEADRVL-DVG----------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~---~~~l~~~~~vViDEah~~~-~~~----------- 221 (493)
.|++...+......... -.+||+++|..-| .+.|+..... ......+.+.||||+|.++ |..
T Consensus 149 svG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 149 SVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred ceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 99999887776554444 3689999998764 2233322110 1234677899999999765 210
Q ss_pred ----CHHHHHHHHHhCCc--------------------------------------------------------------
Q 011100 222 ----FEEELRVVFQCLPK-------------------------------------------------------------- 235 (493)
Q Consensus 222 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 235 (493)
....+..+...+..
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 00111111111100
Q ss_pred ------------------------------------------------------CCceeeeeecccchHHHHHHHhcCCc
Q 011100 236 ------------------------------------------------------NRQTLLFSATMTSDLQTLLELSANKA 261 (493)
Q Consensus 236 ------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~ 261 (493)
...+.+||+|....-..+...+.-..
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~V 386 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRV 386 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 01455666666555445554443332
Q ss_pred eEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHH
Q 011100 262 YFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341 (493)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 341 (493)
..+.... +....-....++.....+...+...+......+ .|+||.|.|++..+.++..|.+.|+...++++.-.
T Consensus 387 v~IPTnk--P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~g-qPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-- 461 (925)
T PRK12903 387 NVVPTNK--PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKG-QPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-- 461 (925)
T ss_pred EECCCCC--CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcC-CCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--
Confidence 2221111 110001111223333344455555555555554 89999999999999999999999999999998533
Q ss_pred HHHHHHHHhhcC-CCeEEEEcCCCCCCCCCCCcC--------eEEEecCCCCCCcceeeccccccCCCCccEEEEEeccc
Q 011100 342 QRLSALHRFKSG-QATILLATDVASRGLDIPTVD--------LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412 (493)
Q Consensus 342 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~~v~--------~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~ 412 (493)
+++..+-. ..| .-.|.|||++++||.||.--. |||....|.|..---|..||+||.|.+|.+..|++-+|
T Consensus 462 e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 462 AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 34433332 445 468999999999999995221 89999999988888899999999999999999998776
No 124
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.6e-21 Score=189.39 Aligned_cols=322 Identities=16% Similarity=0.199 Sum_probs=218.7
Q ss_pred CCCcHHHHhhhhhhhc----CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 81 RRPTPVQTHCIPKILE----GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
..|++||++.+.++.+ +.-.|+...+|.|||...+..+........-...+|||||. .++.||..+|..++..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~-- 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP-- 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc--
Confidence 3479999999998764 45589999999999976443332222221223569999997 6889999999999875
Q ss_pred ceEEEEEcCCCH--------HHHHH-----HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH
Q 011100 157 LRCEVVVGGMDL--------LTQAK-----SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE 223 (493)
Q Consensus 157 ~~~~~~~g~~~~--------~~~~~-----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~ 223 (493)
+++..++|..+. ..... .......|+|+|++.+...-. ...-...+++|+||.|++-+..
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d-----~l~~~~W~y~ILDEGH~IrNpn-- 353 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGD-----DLLGILWDYVILDEGHRIRNPN-- 353 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCc-----ccccccccEEEecCcccccCCc--
Confidence 567777776541 11111 112356799999887643311 1112356899999999998875
Q ss_pred HHHHHHHHhCCcCCceeeeeecccc-hHHHHHHHhcC-------------------------------------------
Q 011100 224 EELRVVFQCLPKNRQTLLFSATMTS-DLQTLLELSAN------------------------------------------- 259 (493)
Q Consensus 224 ~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~------------------------------------------- 259 (493)
..+...+..++ ..+.+++|+||.. .+..+..++..
T Consensus 354 s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 354 SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 45555555554 4455667888632 22222211100
Q ss_pred -----------------------Cc---eEEecc--------------------cc-----------------ccc----
Q 011100 260 -----------------------KA---YFYEAY--------------------EG-----------------FKT---- 272 (493)
Q Consensus 260 -----------------------~~---~~~~~~--------------------~~-----------------~~~---- 272 (493)
+. .+.... +. ...
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 00 000000 00 000
Q ss_pred --cccceEEE-EEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHH-hcCCceeeccCCCCHHHHHHHHH
Q 011100 273 --VETLKQQY-IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE-ELDQEAVALHSFKSQSQRLSALH 348 (493)
Q Consensus 273 --~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~ 348 (493)
...-...+ .......+...+..++......+ .++|+|..++.....+..+|. ..++.+..+.|..+...|..+++
T Consensus 513 ~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg-~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 513 DEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQG-DRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred ccccccCCCcCCChhhcchHHHHHHHHHHHhhCC-CEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 00000011 11112345666777888888777 699999999999999999999 57999999999999999999999
Q ss_pred HhhcCCC--eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccE--EEEEecccHH
Q 011100 349 RFKSGQA--TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA--VSFVTQNDVD 414 (493)
Q Consensus 349 ~f~~g~~--~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~~~~ 414 (493)
+|+++.. -.|++|.+.+-|+|+.+++-||.||+.|+|..-.|..-||-|.|++..+ |-|++....+
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 9998753 3577999999999999999999999999999999999999999986544 5556655443
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=4.7e-20 Score=175.13 Aligned_cols=167 Identities=21% Similarity=0.247 Sum_probs=123.8
Q ss_pred CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchh
Q 011100 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315 (493)
Q Consensus 236 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~ 315 (493)
..|++++||||.+.-.... .+.. .-.+. ++...+...+..-|.......+..-+......+ .++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~v-veQiI---RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~-eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNV-VEQII---RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKN-ERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCce-eEEee---cCCCCCCCceeeecCCCcHHHHHHHHHHHHhcC-CeEEEEeehHH
Confidence 3589999999975322211 1111 11110 111112222233333333444444444434444 79999999999
Q ss_pred hHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC-----CCCCCccee
Q 011100 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI-----PRYPRDYVH 390 (493)
Q Consensus 316 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~-----p~s~~~y~q 390 (493)
.|+.|.++|.+.|+.+.++|++...-+|..++..++.|.+.|||.-+.+-+|+|+|.|..|..+|. .+|-.+.+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998775 467889999
Q ss_pred eccccccCCCCccEEEEEecc
Q 011100 391 RVGRTARAGRGGLAVSFVTQN 411 (493)
Q Consensus 391 r~GR~gR~g~~g~~~~~~~~~ 411 (493)
-||||+|. -.|.++++.+.-
T Consensus 538 tIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhh
Confidence 99999995 679999988753
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.87 E-value=1e-19 Score=184.42 Aligned_cols=316 Identities=17% Similarity=0.160 Sum_probs=206.0
Q ss_pred CcHHHHhhhhhhhc---C-------CcEEEEccCCCCchhHhHHHHHHHhhcCCC----CeEEEEEcccHHHHHHHHHHH
Q 011100 83 PTPVQTHCIPKILE---G-------KDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~---~-------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~----~~~~lil~Pt~~L~~q~~~~~ 148 (493)
++|+|.+.+..+.+ | ..+|++..+|+|||+..+..+...+.+.+. -.+.|||+|. .|+..|.++|
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkEF 317 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKEF 317 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHHH
Confidence 79999999987654 2 237889999999999876666655555553 1678999997 7899999999
Q ss_pred HHhccCCCceEEEEEcCCCH-HHHHHHh------cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC
Q 011100 149 KALGSGLHLRCEVVVGGMDL-LTQAKSL------MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG 221 (493)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~ 221 (493)
.++.....+....++|+... +.....+ .-..-|++.+++.+....... ....++++|+||.|++.+..
T Consensus 318 ~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~i-----l~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 318 GKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKI-----LLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHH-----hcCCCCeEEECCCCCccchh
Confidence 99876556777778887764 1111111 123567788888887666543 35678899999999987754
Q ss_pred CHHHHHHHHHhCCcCCceeeeeeccc-chHHHHHHHh-------------------------------------------
Q 011100 222 FEEELRVVFQCLPKNRQTLLFSATMT-SDLQTLLELS------------------------------------------- 257 (493)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~~~------------------------------------------- 257 (493)
..+...+..+. .++.|++|+|+- +++.++....
T Consensus 393 --s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 393 --SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 44445555554 455688899974 2222221110
Q ss_pred -----cCCceEEeccccccccccceEEEEEecCCc---------------------------------------------
Q 011100 258 -----ANKAYFYEAYEGFKTVETLKQQYIFIPKNV--------------------------------------------- 287 (493)
Q Consensus 258 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 287 (493)
..-....+...-....+.....++++....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 000000000000001111112222221110
Q ss_pred -----------------------------chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCC
Q 011100 288 -----------------------------KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFK 338 (493)
Q Consensus 288 -----------------------------~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 338 (493)
+...|..++..........+++..|-+.+.+.+...++-.|..+..+||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 111112222111111113344444666666777777777799999999999
Q ss_pred CHHHHHHHHHHhhcC--C-CeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEE
Q 011100 339 SQSQRLSALHRFKSG--Q-ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407 (493)
Q Consensus 339 ~~~~r~~~~~~f~~g--~-~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~ 407 (493)
+..+|..+++.|++. . .-.|.+|-+.+.||++-+.+.||.||++|||+.-.|.++|+-|.|++-.|++|
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999974 3 33566788999999999999999999999999999999999999998777554
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=2.8e-20 Score=166.70 Aligned_cols=185 Identities=41% Similarity=0.593 Sum_probs=149.6
Q ss_pred HcCCCCCcHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCC
Q 011100 77 ELGMRRPTPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL 155 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 155 (493)
..++..++++|.+++..+... +.+++.++||+|||.++..+++..+.... ..+++|++|+..++.|+...+..++...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 357788999999999999998 99999999999999999999988877643 3579999999999999999999887655
Q ss_pred CceEEEEEcCCCHHHHHHHhcCCC-cEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC
Q 011100 156 HLRCEVVVGGMDLLTQAKSLMNRP-HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234 (493)
Q Consensus 156 ~~~~~~~~g~~~~~~~~~~~~~~~-~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~ 234 (493)
........++.............. +|+++|++.+...+.... .....++++|+||+|.+....+...+..++..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 434445555555444444444444 999999999999887753 3456788999999999887668888888988888
Q ss_pred cCCceeeeeecccchHHHHHHHhcCCceEEe
Q 011100 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYE 265 (493)
Q Consensus 235 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 265 (493)
...+++++|||++++..............+.
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 8899999999999888888777766544443
No 128
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3.3e-19 Score=181.91 Aligned_cols=281 Identities=21% Similarity=0.186 Sum_probs=184.4
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|.. |+++|.-.--.+.+| -|+.+.||-|||+++.+|++..... |..+.||+++..||..-++++..++..+|+
T Consensus 82 lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~---GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 82 LGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT---GKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred hCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc---CCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 5665 888887666555555 7999999999999999999877666 667999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-----HHHHhcCCCCCCccCCcceEeeccccccc-cCC----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-----KVLLEEDPDIPPVFSRTKFLVLDEADRVL-DVG---------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~~~~~~~~l~~~~~vViDEah~~~-~~~---------- 221 (493)
.|+++.++........ .-.+||+++|+..+ .+.+..... ......+.++||||+|.++ |..
T Consensus 156 tvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 156 SVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred eEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEecccceeeccCCCcccccCCC
Confidence 9999988776644433 45789999999876 444432221 2345778899999999765 211
Q ss_pred -----CHHHHHHHHHhCCc-------------------------------------------------------------
Q 011100 222 -----FEEELRVVFQCLPK------------------------------------------------------------- 235 (493)
Q Consensus 222 -----~~~~~~~i~~~~~~------------------------------------------------------------- 235 (493)
.......+...+..
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 00001111111000
Q ss_pred -------------------------------------------------------------CCceeeeeecccchHHHHH
Q 011100 236 -------------------------------------------------------------NRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 236 -------------------------------------------------------------~~~~i~~SAT~~~~~~~~~ 254 (493)
..++.+||+|.......+.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 0134566666554444444
Q ss_pred HHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeec
Q 011100 255 ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVAL 334 (493)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~ 334 (493)
..+.-....+.... +....-....++.....+...+..-+......+ .|+||-|.|++..+.++..|.+.|+...++
T Consensus 393 ~iY~l~Vv~IPTnk--P~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~G-rPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKLEVTVIPTNR--PRRRQDWPDQVYKTEIAKWRAVANETAEMHKQG-RPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCCcEEEcCCCC--CeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCC-CCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 44433322221111 111111111222333344445555555555555 899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcC-CCeEEEEcCCCCCCCCCC
Q 011100 335 HSFKSQSQRLSALHRFKSG-QATILLATDVASRGLDIP 371 (493)
Q Consensus 335 ~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 371 (493)
++.-...+++..+-.- .| .-.|.|||++++||.||.
T Consensus 470 NAk~~~~~~EA~IIa~-AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQ-AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHh-cCCCCcEEEeccCCCCCcCEe
Confidence 9963333333332222 34 457999999999999984
No 129
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.8e-20 Score=184.81 Aligned_cols=298 Identities=19% Similarity=0.189 Sum_probs=192.7
Q ss_pred hhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC---CCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEE--Ec
Q 011100 90 CIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED---PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV--VG 164 (493)
Q Consensus 90 ~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~--~g 164 (493)
++..|..+.-+||||.||||||+..-..++.+=... ..+..+-|.-|.|.-|..++.+...-...++-.|... +.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 334444556699999999999987555555432211 2244677888999888877766654333344444332 22
Q ss_pred CCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHH-------HhCC---
Q 011100 165 GMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVF-------QCLP--- 234 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~-------~~~~--- 234 (493)
+. ....+.|.++|.|.|+.-+... ..|..++.||+||||.=.= ....+.-++ +...
T Consensus 344 ~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 344 GT--------IGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred cc--------cCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhhhh
Confidence 22 2356899999999999888764 3478899999999995210 112221111 1111
Q ss_pred ---cCCceeeeeecccchHHHHH---HHhcCCceEEeccccccccccceEEEEEecCCcchHHHHH----HHHhhhhcCC
Q 011100 235 ---KNRQTLLFSATMTSDLQTLL---ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMH----VLSKMEDMGI 304 (493)
Q Consensus 235 ---~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~ 304 (493)
....+|+||||+. +..+. .++...+-.+.+.... -.+. +.........++.. .+..+.....
T Consensus 410 ~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQ---fPVs---IHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQ---FPVS---IHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred cccCceeEEEEeeeEE--ecccccCceecCCCCceeeeeccc---CceE---EEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 2456899999985 22222 2222222233322211 1111 12223333344443 4444555666
Q ss_pred CeEEEEecchhhHHHHHHHHHhcC--------------------------------------------------------
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELD-------------------------------------------------------- 328 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~-------------------------------------------------------- 328 (493)
+.+|||+....+++.+.+.|++..
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 889999999999999999887620
Q ss_pred -------------------------------------------CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCC
Q 011100 329 -------------------------------------------QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS 365 (493)
Q Consensus 329 -------------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 365 (493)
.-+..+++-++.+++.++++.-..|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 0145577778888888888888889999999999999
Q ss_pred CCCCCCCcCeEEEecCC--------CCC----------CcceeeccccccCCCCccEEEEEec
Q 011100 366 RGLDIPTVDLVLNYDIP--------RYP----------RDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 366 ~Gidi~~v~~Vi~~~~p--------~s~----------~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
..+.||++.+||+.+.- ..+ ++--||+|||||.| +|.||-+|+.
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99999999999985533 223 34469999999985 5999999875
No 130
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.1e-20 Score=179.91 Aligned_cols=356 Identities=14% Similarity=0.054 Sum_probs=249.7
Q ss_pred HHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 74 TCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 74 ~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
.+..+-......+|.+++..+.+|++.++.-.|.+||.++|.+.....+...+ ....+++.|+.++++...+.+.-...
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-ATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-ccceecchhHHHHhhccCCceEEEEE
Confidence 34445667789999999999999999999999999999999998877666544 44589999999998876543322111
Q ss_pred ---CCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHH-HHhcCCCCCCccCCcceEeeccccccccCCCH----HH
Q 011100 154 ---GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKV-LLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE----EE 225 (493)
Q Consensus 154 ---~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~-~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~----~~ 225 (493)
...--++-.+.+............+.+++++.|..... .+.+...+..++-...++++||+|.++.. ++ ..
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~ 435 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQ 435 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHH
Confidence 11112334455555555555566788999999988655 34444444444555678999999976543 33 23
Q ss_pred HHHHHHhC-----CcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC---------cchHH
Q 011100 226 LRVVFQCL-----PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN---------VKDVY 291 (493)
Q Consensus 226 ~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 291 (493)
++.+++.+ ..+.|++-.+||+...+......+.-...... .....+..-++.+++.|.- .+...
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li--~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELV--TIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEE--EecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 33333322 24678999999988766665555543332222 2223344445555554421 12223
Q ss_pred HHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCC--------ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC
Q 011100 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ--------EAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363 (493)
Q Consensus 292 l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 363 (493)
...++..+...+ -++|.||++++.|+.+....++.-+ .+..|.|+...++|.++...+-.|+..-+|+|++
T Consensus 514 ~s~~~~~~i~~~-~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNA 592 (1034)
T KOG4150|consen 514 VSHLFAEMVQHG-LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNA 592 (1034)
T ss_pred HHHHHHHHHHcC-CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecch
Confidence 344555555555 6899999999999988776655321 2456889999999999999999999999999999
Q ss_pred CCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEe--cccHHHHHHHHHHhcCcccccccch
Q 011100 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT--QNDVDLIHEIEAVVGKQLEEFECKE 434 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (493)
++.|||+.+++.|++.++|.|+..+.|..|||||.+++..+++++. +-|..++..-...++....+...+.
T Consensus 593 LELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 593 LELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred hhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEec
Confidence 9999999999999999999999999999999999998887766554 5566666666666666666655444
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.5e-20 Score=176.60 Aligned_cols=314 Identities=17% Similarity=0.197 Sum_probs=208.8
Q ss_pred CCCcHHHHhhhhhhhcC---CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 81 RRPTPVQTHCIPKILEG---KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~---~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
..++|||++++..+..+ ++.+|+.|+|+|||++-+-++... ..++|++|.+-.-+.||...|..+..--+-
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCcc
Confidence 45899999999998854 679999999999998755433322 456999999999999999999998765556
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC-----CCccCCcceEeeccccccccCCCHHHHHHHHHh
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI-----PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-----~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~ 232 (493)
.++.++.+... ....++.|+|+|+.++..--.+.... ...-..+.++++||+|.+....|...+..+...
T Consensus 375 ~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 375 QICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred ceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH
Confidence 67777776442 23467889999997663211110000 011245689999999998776677666666555
Q ss_pred CCcCCceeeeeecccchHHHHHH--------------HhcCC-ceEEe-------------ccccccccccceEEEEEec
Q 011100 233 LPKNRQTLLFSATMTSDLQTLLE--------------LSANK-AYFYE-------------AYEGFKTVETLKQQYIFIP 284 (493)
Q Consensus 233 ~~~~~~~i~~SAT~~~~~~~~~~--------------~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~~ 284 (493)
. .+++|||+-.+-.++.. ..+.. ..+-. ....+......+.....+-
T Consensus 450 c-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM 524 (776)
T KOG1123|consen 450 C-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM 524 (776)
T ss_pred h-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec
Confidence 4 58999998543222111 11100 00000 0001111111111222222
Q ss_pred CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhc-CCCeEEEEcCC
Q 011100 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS-GQATILLATDV 363 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~ 363 (493)
...+......+++.++..+ .++|||..+.-.....|-.|. --.++|..++.+|..+++.|+- ..++.++.+-+
T Consensus 525 NP~KFraCqfLI~~HE~Rg-DKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRG-DKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred CcchhHHHHHHHHHHHhcC-CeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 3345555566677666655 899999988776666655443 3467899999999999999995 46889999999
Q ss_pred CCCCCCCCCcCeEEEecCCC-CCCcceeeccccccCCC------CccEEEEEecccHHHH
Q 011100 364 ASRGLDIPTVDLVLNYDIPR-YPRDYVHRVGRTARAGR------GGLAVSFVTQNDVDLI 416 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~p~-s~~~y~qr~GR~gR~g~------~g~~~~~~~~~~~~~~ 416 (493)
....+|+|..+++|+..... |...-.||.||.-|+.+ ....+++++.+..++.
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 99999999999999876553 45566899999988743 2345667776655433
No 132
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.1e-19 Score=170.36 Aligned_cols=329 Identities=17% Similarity=0.174 Sum_probs=216.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
...|...+.++...+.|++.---..+..+.+.+..+..++-+++.|.||||||...-.+.+....... ..+...-|.|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchH
Confidence 56788899999999999887666678888888888888999999999999999876666666555543 3466777999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc-c
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR-V 217 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~-~ 217 (493)
.-|.+++.+...-. ++..+--.|..-..+.. ..+++-+-+||.++|+.-..+. ..+..++++|+||||. .
T Consensus 102 vaamsva~RVadEM---Dv~lG~EVGysIrfEdC--~~~~T~Lky~tDgmLlrEams~----p~l~~y~viiLDeahERt 172 (699)
T KOG0925|consen 102 VAAMSVAQRVADEM---DVTLGEEVGYSIRFEDC--TSPNTLLKYCTDGMLLREAMSD----PLLGRYGVIILDEAHERT 172 (699)
T ss_pred HHHHHHHHHHHHHh---ccccchhcccccccccc--CChhHHHHHhcchHHHHHHhhC----cccccccEEEechhhhhh
Confidence 88888876655432 33332223322111111 1122223468888877655543 3478999999999995 1
Q ss_pred ccCC-CHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC-cchHHHHHH
Q 011100 218 LDVG-FEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN-VKDVYLMHV 295 (493)
Q Consensus 218 ~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 295 (493)
+..+ .-..+..+...- ++..++.||||+ +..++...+.+.+..... . ...+...|..-+.. .-...+..+
T Consensus 173 lATDiLmGllk~v~~~r-pdLk~vvmSatl--~a~Kfq~yf~n~Pll~vp-g----~~PvEi~Yt~e~erDylEaairtV 244 (699)
T KOG0925|consen 173 LATDILMGLLKEVVRNR-PDLKLVVMSATL--DAEKFQRYFGNAPLLAVP-G----THPVEIFYTPEPERDYLEAAIRTV 244 (699)
T ss_pred HHHHHHHHHHHHHHhhC-CCceEEEeeccc--chHHHHHHhCCCCeeecC-C----CCceEEEecCCCChhHHHHHHHHH
Confidence 1111 112233334333 588999999998 467777777777655321 1 11122222221221 122334445
Q ss_pred HHhhhhcCCCeEEEEecchhhHHHHHHHHHhc---------CCceeeccCCCCHHHHHHHHHHhhc---C--CCeEEEEc
Q 011100 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL---------DQEAVALHSFKSQSQRLSALHRFKS---G--QATILLAT 361 (493)
Q Consensus 296 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---g--~~~vlv~T 361 (493)
++.......+.+|||....++.+..++.+... .+.+..+| +.+...+++.... | ..+|+|+|
T Consensus 245 ~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvst 320 (699)
T KOG0925|consen 245 LQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVST 320 (699)
T ss_pred HHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEe
Confidence 55555556789999999999888887777632 24566777 4444444443332 2 35899999
Q ss_pred CCCCCCCCCCCcCeEEEecC------------------CCCCCcceeeccccccCCCCccEEEEEecc
Q 011100 362 DVASRGLDIPTVDLVLNYDI------------------PRYPRDYVHRVGRTARAGRGGLAVSFVTQN 411 (493)
Q Consensus 362 ~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 411 (493)
++++..+.++++.+||+-++ |-|..+-.||.||+||. ++|.|+.+|++.
T Consensus 321 niaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 321 NIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred cchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999998554 33445667999999995 889999999864
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=4.4e-18 Score=180.38 Aligned_cols=347 Identities=22% Similarity=0.314 Sum_probs=206.2
Q ss_pred cCCCCCcHHHHhhhhhh----hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH-HHHHHhc
Q 011100 78 LGMRRPTPVQTHCIPKI----LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA-EQFKALG 152 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~ 152 (493)
.||. +++-|.+....+ .++..+++.|+||+|||++|++|++... .+.+++|++||++|+.|+. +.+..+.
T Consensus 242 ~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 3554 999999855443 3467799999999999999999988754 2567999999999999994 6677777
Q ss_pred cCCCceEEEEEcCCCHHHH-----------------------------------------------HHHh----------
Q 011100 153 SGLHLRCEVVVGGMDLLTQ-----------------------------------------------AKSL---------- 175 (493)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~~-----------------------------------------------~~~~---------- 175 (493)
+.+++++..+.|+.++.-. +..+
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 7677877777765431000 0000
Q ss_pred --------------cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-----CH-------HH----
Q 011100 176 --------------MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-----FE-------EE---- 225 (493)
Q Consensus 176 --------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-----~~-------~~---- 225 (493)
....+|+|+...-|...+.... .+...+++||||||++.+.. .. ..
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~----~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~ 472 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK----DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKA 472 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc----CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHH
Confidence 1124899999887666554332 24678999999999875321 00 00
Q ss_pred ---------------------------------------H------------------HHHHHh------C---------
Q 011100 226 ---------------------------------------L------------------RVVFQC------L--------- 233 (493)
Q Consensus 226 ---------------------------------------~------------------~~i~~~------~--------- 233 (493)
+ ..++.. +
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~ 552 (820)
T PRK07246 473 LSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKR 552 (820)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcc
Confidence 0 000000 0
Q ss_pred ------------------CcCCceeeeeeccc--chHHHHHHHh-cCCceEEeccccccccccceEEEEEe----cCC--
Q 011100 234 ------------------PKNRQTLLFSATMT--SDLQTLLELS-ANKAYFYEAYEGFKTVETLKQQYIFI----PKN-- 286 (493)
Q Consensus 234 ------------------~~~~~~i~~SAT~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 286 (493)
+....++++|||++ +... +.... ............+ . .+....+ +..
T Consensus 553 ~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~~~---~--~~~~~~i~~~~p~~~~ 626 (820)
T PRK07246 553 VTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEKDK---K--QDQLVVVDQDMPLVTE 626 (820)
T ss_pred eeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCCCCh---H--HccEEEeCCCCCCCCC
Confidence 00135688899985 2222 33222 2211111111000 0 1111221 211
Q ss_pred -cchH---HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC
Q 011100 287 -VKDV---YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362 (493)
Q Consensus 287 -~~~~---~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 362 (493)
.... .+...+..+. ...++++|+++|.+..+.++..|......+ ...|... .+..++++|++++..||++|+
T Consensus 627 ~~~~~~~~~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 627 TSDEVYAEEIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred CChHHHHHHHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 0112 2333343444 334799999999999999999997654443 3334221 255689999999889999999
Q ss_pred CCCCCCCCCC--cCeEEEecCCCC-C-----------------------------CcceeeccccccCCCCccEEEEEec
Q 011100 363 VASRGLDIPT--VDLVLNYDIPRY-P-----------------------------RDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 363 ~~~~Gidi~~--v~~Vi~~~~p~s-~-----------------------------~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
.+.+|||+|+ ...||...+|.. + ..+.|-+||.-|...+--+++++++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 9999999974 555677676632 2 1246889999997653324444443
Q ss_pred c--cHHHHHHHHHHhcCcccccccchHHHHHHHHH
Q 011100 411 N--DVDLIHEIEAVVGKQLEEFECKEQEVLSDITR 443 (493)
Q Consensus 411 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (493)
. ...+-+.+.+.+-..+.....+..++...+.+
T Consensus 783 R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~~~~~ 817 (820)
T PRK07246 783 RILTKSYGKQILASLAEEFLISQQNFSDVLVEIDR 817 (820)
T ss_pred cccccHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Confidence 3 22344555555544333334455555554443
No 134
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.83 E-value=4.9e-19 Score=174.99 Aligned_cols=321 Identities=18% Similarity=0.223 Sum_probs=216.4
Q ss_pred CcHHHHhhhhhhh----cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCce
Q 011100 83 PTPVQTHCIPKIL----EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLR 158 (493)
Q Consensus 83 ~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 158 (493)
+-+||.-.+.++. .+-+.|+....|.|||...+ ..+..|.+.+....-|||||...| ..|.++|.++|+. ++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPs--l~ 475 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPS--LK 475 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCc--eE
Confidence 7889999988753 34568999999999997644 344444443334457999999776 5589999999985 77
Q ss_pred EEEEEcCCCHHHHHHHhc----CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC
Q 011100 159 CEVVVGGMDLLTQAKSLM----NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234 (493)
Q Consensus 159 ~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~ 234 (493)
+...+|......+.+... ...+|+++|+.....--.... +..-.++.++|+||+|.+.+.. ...+..++.. +
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRs--flk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I-~ 551 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRS--FLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI-N 551 (941)
T ss_pred EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHH--HHHhccccEEEecchhhhhccc-hHHHHHhccc-c
Confidence 888999887666655432 368999999865421111000 1112467899999999888763 3334443332 2
Q ss_pred cCCceeeeeeccc-chHHHHHHHh--------------------------------------------------------
Q 011100 235 KNRQTLLFSATMT-SDLQTLLELS-------------------------------------------------------- 257 (493)
Q Consensus 235 ~~~~~i~~SAT~~-~~~~~~~~~~-------------------------------------------------------- 257 (493)
....+++|+||- +++..++.+.
T Consensus 552 -An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~ 630 (941)
T KOG0389|consen 552 -ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKS 630 (941)
T ss_pred -ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334566777762 1111110000
Q ss_pred ------cCCceEEec-------------------------ccc--c------------cccccc-eEEEE----------
Q 011100 258 ------ANKAYFYEA-------------------------YEG--F------------KTVETL-KQQYI---------- 281 (493)
Q Consensus 258 ------~~~~~~~~~-------------------------~~~--~------------~~~~~~-~~~~~---------- 281 (493)
..+...+.. ... . ...+.+ +..|.
T Consensus 631 qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~ 710 (941)
T KOG0389|consen 631 QVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKR 710 (941)
T ss_pred HHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHH
Confidence 000000000 000 0 000000 00000
Q ss_pred ---------------------------------------------EecCCcchHHHHHHHHhhhhcCCCeEEEEecchhh
Q 011100 282 ---------------------------------------------FIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316 (493)
Q Consensus 282 ---------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~ 316 (493)
..-...+...|..++..+...+ .++|||..-...
T Consensus 711 il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G-~RVLiFSQFTqm 789 (941)
T KOG0389|consen 711 ILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG-DRVLIFSQFTQM 789 (941)
T ss_pred HhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC-CEEEEeeHHHHH
Confidence 0002234555666777777776 899999999999
Q ss_pred HHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCC-C-eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccc
Q 011100 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ-A-TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGR 394 (493)
Q Consensus 317 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR 394 (493)
.+.|...|.-+++....+.|...-.+|..+++.|...+ + -+|++|-+.+.|||+..+++||.+|...+|-.-.|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999999754 3 468899999999999999999999999999999999999
Q ss_pred cccCCCC--ccEEEEEecccH
Q 011100 395 TARAGRG--GLAVSFVTQNDV 413 (493)
Q Consensus 395 ~gR~g~~--g~~~~~~~~~~~ 413 (493)
++|.|+. -.++-|++.+..
T Consensus 870 cHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHhhCCcceeEEEEEEecCcH
Confidence 9999975 455777777654
No 135
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=7.5e-20 Score=174.17 Aligned_cols=282 Identities=16% Similarity=0.237 Sum_probs=189.0
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
-++-+|||.||||.- +++++.. ....++.-|.|-||.++++.+.+. |+.|..++|......... ...
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~---aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~ 259 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKS---AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNP 259 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhh---hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCc
Confidence 366689999999954 5667766 456799999999999999998887 789999999754322211 124
Q ss_pred CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHH-HHHHhCCcCCceeeeeecccchHHHHHHHh
Q 011100 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR-VVFQCLPKNRQTLLFSATMTSDLQTLLELS 257 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~-~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 257 (493)
+..+-||-++.. .-..+++.||||+++|.+...+-.|. .++.......++++=-|-++ -++.+....
T Consensus 260 a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvld-lV~~i~k~T 327 (700)
T KOG0953|consen 260 AQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLD-LVRKILKMT 327 (700)
T ss_pred ccceEEEEEEee-----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHH-HHHHHHhhc
Confidence 677888876642 12456899999999999887765554 44444445555555333322 233333322
Q ss_pred cCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCc-eeeccC
Q 011100 258 ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE-AVALHS 336 (493)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~ 336 (493)
... ..+ ..|..... ......++..+.....+.|| .|-+++....+...+.+.+.. +++++|
T Consensus 328 Gd~-vev-------------~~YeRl~p---L~v~~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 328 GDD-VEV-------------REYERLSP---LVVEETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred CCe-eEE-------------EeecccCc---ceehhhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhcCcceEEEec
Confidence 221 111 11111111 11111233333333335554 467888899999999888876 999999
Q ss_pred CCCHHHHHHHHHHhhc--CCCeEEEEcCCCCCCCCCCCcCeEEEecCCC---------CCCcceeeccccccCCC---Cc
Q 011100 337 FKSQSQRLSALHRFKS--GQATILLATDVASRGLDIPTVDLVLNYDIPR---------YPRDYVHRVGRTARAGR---GG 402 (493)
Q Consensus 337 ~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~---------s~~~y~qr~GR~gR~g~---~g 402 (493)
+++++.|...-..|++ ++++||||||++++|+|+ +++-||.+++-+ ...+..|.+|||||.|. .|
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999997 899999999999999999 899999887652 23456899999999874 47
Q ss_pred cEEEEEecccHHHHHHHHHHhcCccc
Q 011100 403 LAVSFVTQNDVDLIHEIEAVVGKQLE 428 (493)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (493)
.+.++..++ +..+.+.+....+
T Consensus 469 ~vTtl~~eD----L~~L~~~l~~p~e 490 (700)
T KOG0953|consen 469 EVTTLHSED----LKLLKRILKRPVE 490 (700)
T ss_pred eEEEeeHhh----HHHHHHHHhCCch
Confidence 666665543 3444444444443
No 136
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.81 E-value=2.2e-17 Score=155.29 Aligned_cols=316 Identities=14% Similarity=0.187 Sum_probs=209.7
Q ss_pred CCCcHHHHhhhhhhh-cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 81 RRPTPVQTHCIPKIL-EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
..+.|+|.+.+...+ .|..+++...+|.|||+.++..+... .. ....|||||. +|-..|.+.+..++..... +
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yy-ra---EwplliVcPA-svrftWa~al~r~lps~~p-i 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYY-RA---EWPLLIVCPA-SVRFTWAKALNRFLPSIHP-I 270 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHH-hh---cCcEEEEecH-HHhHHHHHHHHHhcccccc-e
Confidence 346899999998755 46779999999999999866544333 33 2348999997 5677899999998765433 5
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCce
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 239 (493)
.++.++.+.. ..+.....|.|.+++.+..+-.-. .-..+.+||+||.|++.+. .....+.++..+..-.++
T Consensus 271 ~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~l-----~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhv 341 (689)
T KOG1000|consen 271 FVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDIL-----KKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHV 341 (689)
T ss_pred EEEecccCCc---cccccCCeEEEEEHHHHHHHHHHH-----hcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhhe
Confidence 5555655431 122344678999998876543322 1234789999999987665 334455555555566789
Q ss_pred eeeeecccc----hH---------------HHHHHHhcC-C--ceEEecccc------------------------cccc
Q 011100 240 LLFSATMTS----DL---------------QTLLELSAN-K--AYFYEAYEG------------------------FKTV 273 (493)
Q Consensus 240 i~~SAT~~~----~~---------------~~~~~~~~~-~--~~~~~~~~~------------------------~~~~ 273 (493)
+++|+|+.- ++ -.+...+.+ + .+.+..... ...+
T Consensus 342 ILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLP 421 (689)
T KOG1000|consen 342 ILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLP 421 (689)
T ss_pred EEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999741 11 111111111 0 011110000 0112
Q ss_pred ccceEEEEEecCCcc-------------------------------------hHHHHHHHHh---hhhcCCCeEEEEecc
Q 011100 274 ETLKQQYIFIPKNVK-------------------------------------DVYLMHVLSK---MEDMGIRSAIIFVST 313 (493)
Q Consensus 274 ~~~~~~~~~~~~~~~-------------------------------------~~~l~~~~~~---~~~~~~~~~lVf~~~ 313 (493)
....+.++.++.... ...+.+.+.. +...+..+.+|||..
T Consensus 422 pKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH 501 (689)
T KOG1000|consen 422 PKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHH 501 (689)
T ss_pred ccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehh
Confidence 221222222221110 0001111111 233445789999999
Q ss_pred hhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC-CCeE-EEEcCCCCCCCCCCCcCeEEEecCCCCCCcceee
Q 011100 314 CRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG-QATI-LLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHR 391 (493)
Q Consensus 314 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr 391 (493)
....+.+..++.+.++..+.+.|..+..+|....+.|+.. +.+| +++-.+++.|+++...+.|++..++|++.-.+|.
T Consensus 502 ~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQA 581 (689)
T KOG1000|consen 502 QIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEec
Confidence 9999999999999999999999999999999999999965 4555 4566889999999999999999999999999999
Q ss_pred ccccccCCCCccEE--EEEecc
Q 011100 392 VGRTARAGRGGLAV--SFVTQN 411 (493)
Q Consensus 392 ~GR~gR~g~~g~~~--~~~~~~ 411 (493)
-.|++|.|++..+. .|+..+
T Consensus 582 EDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 582 EDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred hhhhhhccccceeeEEEEEecC
Confidence 99999999987653 344444
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.79 E-value=1.6e-18 Score=178.08 Aligned_cols=320 Identities=17% Similarity=0.161 Sum_probs=210.2
Q ss_pred CCcHHHHhhhhhhh--c--CCcEEEEccCCCCchhHhHHHHHHHhhcCC------CCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 82 RPTPVQTHCIPKIL--E--GKDVLGLAQTGSGKTAAFALPILHRLAEDP------YGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~--~--~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.++.||++.+.++. . +-+.|++...|-|||+..+-.+......+. .....|||||. .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 36889999998753 2 346899999999999986544443332221 13448999997 7999999999999
Q ss_pred ccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHH
Q 011100 152 GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231 (493)
Q Consensus 152 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~ 231 (493)
+.. +++....|+.......+....+.+|+|+.++.+.+-+..... ..+.|+|+||-|-+.+.. ..+.....
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~-----~~wNYcVLDEGHVikN~k--tkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK-----IDWNYCVLDEGHVIKNSK--TKLTKAVK 1124 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh-----cccceEEecCcceecchH--HHHHHHHH
Confidence 876 677777887766666665567789999999988754433211 245689999999887643 33333344
Q ss_pred hCCcCCceeeeeecccc-hHHHHHHHhcC-----------------CceEEec----c----------------------
Q 011100 232 CLPKNRQTLLFSATMTS-DLQTLLELSAN-----------------KAYFYEA----Y---------------------- 267 (493)
Q Consensus 232 ~~~~~~~~i~~SAT~~~-~~~~~~~~~~~-----------------~~~~~~~----~---------------------- 267 (493)
.+..+ +.+.+|+||-. .+.++..++.. ++..-.. .
T Consensus 1125 qL~a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRAN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 44333 35667888742 22222211100 0000000 0
Q ss_pred -------ccccccccceEEEE---------------------------------------------------------Ee
Q 011100 268 -------EGFKTVETLKQQYI---------------------------------------------------------FI 283 (493)
Q Consensus 268 -------~~~~~~~~~~~~~~---------------------------------------------------------~~ 283 (493)
--...++.+.|.|+ ..
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 00000111111110 00
Q ss_pred c-----------------------CCcchHHHHHHHHhhhh-------------cCCCeEEEEecchhhHHHHHHHHHhc
Q 011100 284 P-----------------------KNVKDVYLMHVLSKMED-------------MGIRSAIIFVSTCRSCHLLSLLLEEL 327 (493)
Q Consensus 284 ~-----------------------~~~~~~~l~~~~~~~~~-------------~~~~~~lVf~~~~~~~~~l~~~l~~~ 327 (493)
+ ...|...+..++....- ....++||||.-+...+-+.+-|.+.
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 0 11122222333322211 12368999999999999988777654
Q ss_pred C---CceeeccCCCCHHHHHHHHHHhhcC-CCeEEE-EcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCc
Q 011100 328 D---QEAVALHSFKSQSQRLSALHRFKSG-QATILL-ATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG 402 (493)
Q Consensus 328 ~---~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv-~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g 402 (493)
. .....+.|..++.+|.++.++|+++ .++||+ +|-+.+-|+|+.++|+||+++-.|+|..-+|...||+|.|++-
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCce
Confidence 3 3345789999999999999999998 678766 7789999999999999999999999999999999999999876
Q ss_pred cE--EEEEeccc
Q 011100 403 LA--VSFVTQND 412 (493)
Q Consensus 403 ~~--~~~~~~~~ 412 (493)
.+ +-+++.+.
T Consensus 1444 vVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1444 VVNVYRLITRGT 1455 (1549)
T ss_pred eeeeeeehhccc
Confidence 54 66666664
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=1.3e-18 Score=144.75 Aligned_cols=120 Identities=35% Similarity=0.572 Sum_probs=108.3
Q ss_pred cchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCC
Q 011100 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366 (493)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 366 (493)
.+...+..++..... ..+++||||++...++.++..|.+.+..+..+||+++..+|..+++.|.++...+|++|+++++
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 455566666665543 3478999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEE
Q 011100 367 GLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407 (493)
Q Consensus 367 Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~ 407 (493)
|+|+|++++||+++.|++...|+|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998887653
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.77 E-value=5.7e-16 Score=157.22 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=75.2
Q ss_pred HHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhc----CCCeEEEEcCCCCCCCCC-
Q 011100 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS----GQATILLATDVASRGLDI- 370 (493)
Q Consensus 296 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gidi- 370 (493)
+..+.....++++|.+.|....+.++..|...--..+.+.|..+ .+..++++|++ |...||++|+.+.+|||+
T Consensus 462 ~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~ 539 (636)
T TIGR03117 462 TAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLT 539 (636)
T ss_pred HHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccC
Confidence 33334444478999999999999999999764323445555432 34567888887 478999999999999999
Q ss_pred -------C--CcCeEEEecCCCCCC-------------------------cceeeccccccCCCC
Q 011100 371 -------P--TVDLVLNYDIPRYPR-------------------------DYVHRVGRTARAGRG 401 (493)
Q Consensus 371 -------~--~v~~Vi~~~~p~s~~-------------------------~y~qr~GR~gR~g~~ 401 (493)
| .+.+||+..+|..+. .+.|-+||.-|...+
T Consensus 540 ~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 540 HKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred CccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 3 388899887774321 246888998887654
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=3.9e-16 Score=168.71 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=83.8
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCC--ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ--EAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP 371 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 371 (493)
..+..+.....+++|||++|.+..+.++..|..... ....+.-+++...|..+++.|+.++-.||++|..+.+|||+|
T Consensus 742 ~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~p 821 (928)
T PRK08074 742 AYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIP 821 (928)
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccC
Confidence 333334433447899999999999999999976432 122333344445678899999999889999999999999999
Q ss_pred C--cCeEEEecCCCC-CC-----------------------------cceeeccccccCCCCccEEEEEec
Q 011100 372 T--VDLVLNYDIPRY-PR-----------------------------DYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 372 ~--v~~Vi~~~~p~s-~~-----------------------------~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
+ +.+||...+|.. +. .+.|.+||.-|...+--++++++.
T Consensus 822 g~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 822 GDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred CCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 7 478888777752 21 236889999998654334444444
No 141
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=8.7e-17 Score=166.04 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=98.1
Q ss_pred cchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCC
Q 011100 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASR 366 (493)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 366 (493)
.+...+..-+..+...+ .|+||-+.|++..+.++..|...+++..++++.....+ ..+-.-.-..-.|.|||++++|
T Consensus 612 eK~~Aii~ei~~~~~~G-rPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E--AeIVA~AG~~GaVTIATNMAGR 688 (1112)
T PRK12901 612 EKYNAVIEEITELSEAG-RPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE--AEIVAEAGQPGTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHCC-CCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH--HHHHHhcCCCCcEEEeccCcCC
Confidence 34445555555555555 89999999999999999999999999999988654333 3222222224579999999999
Q ss_pred CCCCC--------CcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 367 GLDIP--------TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 367 Gidi~--------~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
|.||. +=-+||....+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99996 334889999999999999999999999999999999987763
No 142
>COG4889 Predicted helicase [General function prediction only]
Probab=99.75 E-value=1.1e-18 Score=173.84 Aligned_cols=330 Identities=19% Similarity=0.227 Sum_probs=189.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC----CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG----KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~----~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
..|+.+.- .++...+.-..-.+|+|+|+.|+....+| ...=+.+.+|+|||.+.+ -+...+.. .++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh----hheEeec
Confidence 44544432 34455555566778999999999998775 224455679999998854 45566554 5799999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHH-----------------------HHH--HHhcCCCcEEEECcchHH
Q 011100 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL-----------------------TQA--KSLMNRPHVVIATPGRIK 190 (493)
Q Consensus 136 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~-----------------------~~~--~~~~~~~~Iiv~Tp~~l~ 190 (493)
|+.+|..|..+++..-. .+.++...+.++.... ... .....+--|+++|++.+.
T Consensus 214 PSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99999999888887643 2345544444432110 011 111234568999999886
Q ss_pred HHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC-----cCCceeeeeecccchHHHHHHHhcCCc----
Q 011100 191 VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-----KNRQTLLFSATMTSDLQTLLELSANKA---- 261 (493)
Q Consensus 191 ~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~~~~~~~~~~~~~---- 261 (493)
..-.... .-+..+++||+||||+.........=..-+..+. +....+.|||||.---+..........
T Consensus 293 ~i~eAQe---~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~ 369 (1518)
T COG4889 293 RIKEAQE---AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELS 369 (1518)
T ss_pred HHHHHHH---cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceee
Confidence 6544331 2267889999999998653221111111111111 123457899997421111100000000
Q ss_pred ----------eEEeccccc----cccccceEEEEEecC----------------CcchHHHHHHH---Hhhh-hcC----
Q 011100 262 ----------YFYEAYEGF----KTVETLKQQYIFIPK----------------NVKDVYLMHVL---SKME-DMG---- 303 (493)
Q Consensus 262 ----------~~~~~~~~~----~~~~~~~~~~~~~~~----------------~~~~~~l~~~~---~~~~-~~~---- 303 (493)
.++...-+. ......+..+..+.. .........++ .-+. ..+
T Consensus 370 SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~ 449 (1518)
T COG4889 370 SMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDND 449 (1518)
T ss_pred ccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccc
Confidence 000000000 000011111111110 00111110111 0000 000
Q ss_pred ----------CCeEEEEecchhhHHHHHHHHHh-------------cCC--ceeeccCCCCHHHHHHHHH---HhhcCCC
Q 011100 304 ----------IRSAIIFVSTCRSCHLLSLLLEE-------------LDQ--EAVALHSFKSQSQRLSALH---RFKSGQA 355 (493)
Q Consensus 304 ----------~~~~lVf~~~~~~~~~l~~~l~~-------------~~~--~~~~~~~~~~~~~r~~~~~---~f~~g~~ 355 (493)
..++|-||.++++...++..+.. .++ .+-.+.|.|...+|...+. .|...++
T Consensus 450 ~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~nec 529 (1518)
T COG4889 450 LKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNEC 529 (1518)
T ss_pred ccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchh
Confidence 13578899998887777665532 133 3444568899999865544 3456789
Q ss_pred eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCC
Q 011100 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399 (493)
Q Consensus 356 ~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g 399 (493)
+||--...+++|+|+|.++.||.+++-.++-+.+|.+||+-|-.
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99988899999999999999999999999999999999999954
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=9.1e-19 Score=131.09 Aligned_cols=78 Identities=36% Similarity=0.678 Sum_probs=75.5
Q ss_pred HHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCC
Q 011100 322 LLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG 399 (493)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g 399 (493)
++|+..++.+..+||+++..+|..+++.|++++..|||||+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=5e-17 Score=137.02 Aligned_cols=144 Identities=42% Similarity=0.549 Sum_probs=112.7
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
+++++.+|||+|||.+++..+........ ..+++|++|++.++.|+.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 46899999999999998888887766532 567999999999999999999888765 6778888887776665555567
Q ss_pred CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecc
Q 011100 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 246 (493)
..+|+++|++.+........ .....++++|+||+|.+....+...............+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 89999999999887776542 2345778999999999887655444333344456788899999996
No 145
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.73 E-value=3.2e-17 Score=166.17 Aligned_cols=316 Identities=18% Similarity=0.211 Sum_probs=210.8
Q ss_pred cCCCCCcHHHHhhhhhhhc----CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 78 LGMRRPTPVQTHCIPKILE----GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
+...++.+||...+.++.+ +-+.|++..+|.|||..-+..+...+......+.-||+||+-.|.+ |..+|..+.+
T Consensus 390 l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaP 468 (1157)
T KOG0386|consen 390 LQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAP 468 (1157)
T ss_pred hcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccc
Confidence 4445799999999988654 3468999999999998765555444433333445799999988876 7778888765
Q ss_pred CCCceEEEEEcCCCHHHH--HHHhcCCCcEEEECcchHHHHHhcCCCCCCccC--CcceEeeccccccccCCCHHHHHHH
Q 011100 154 GLHLRCEVVVGGMDLLTQ--AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFS--RTKFLVLDEADRVLDVGFEEELRVV 229 (493)
Q Consensus 154 ~~~~~~~~~~g~~~~~~~--~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~--~~~~vViDEah~~~~~~~~~~~~~i 229 (493)
. +......|....... .....++.+|+++|++.+.. . ...|+ +..++||||.|+|.+.. ..+...
T Consensus 469 S--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----d---k~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~ 537 (1157)
T KOG0386|consen 469 S--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----D---KALLSKISWKYMIIDEGHRMKNAI--CKLTDT 537 (1157)
T ss_pred c--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----C---HHHHhccCCcceeecccccccchh--hHHHHH
Confidence 3 444444454332211 12224789999999887643 1 11222 34579999999998732 222222
Q ss_pred HHhCCcCCceeeeeecccc-------------------------------------------------------------
Q 011100 230 FQCLPKNRQTLLFSATMTS------------------------------------------------------------- 248 (493)
Q Consensus 230 ~~~~~~~~~~i~~SAT~~~------------------------------------------------------------- 248 (493)
+.......+.+++|+|+-.
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 3222223334455555420
Q ss_pred ---------------------------------------------------------hHHHHHHHhcCCceEEe-ccccc
Q 011100 249 ---------------------------------------------------------DLQTLLELSANKAYFYE-AYEGF 270 (493)
Q Consensus 249 ---------------------------------------------------------~~~~~~~~~~~~~~~~~-~~~~~ 270 (493)
.+..+.++ .+.|+.+. +...+
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKi-CNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKL-CNHPYLFANVENSY 696 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHh-cCCchhhhhhcccc
Confidence 00000000 11111110 00000
Q ss_pred cccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHh
Q 011100 271 KTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350 (493)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 350 (493)
...-.. -..+....+...+..++-++...+ ++++.||........+..+|.-.++....+.|....++|...+..|
T Consensus 697 ~~~~~~---~dL~R~sGKfELLDRiLPKLkatg-HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 697 TLHYDI---KDLVRVSGKFELLDRILPKLKATG-HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccCh---hHHHHhccHHHHHHhhhHHHHhcC-cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 000000 011123446666777787777777 8999999999999999999999999999999999999999999999
Q ss_pred hcCC---CeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEec
Q 011100 351 KSGQ---ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 351 ~~g~---~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
..-+ +..|.+|.+.+.|+|+..++.||.||..|++....|+--|+.|.|+...+-++...
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 9744 35688999999999999999999999999999999999999999988777665543
No 146
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=4.2e-17 Score=144.21 Aligned_cols=155 Identities=24% Similarity=0.258 Sum_probs=103.7
Q ss_pred CCcHHHHhhhhhhhc-------CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 82 RPTPVQTHCIPKILE-------GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+..... +++|++|+..|+.|+...+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 489999999999884 578999999999999998865555433 7999999999999999999776543
Q ss_pred CCceEEE-----------EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC--------CCccCCcceEeecccc
Q 011100 155 LHLRCEV-----------VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI--------PPVFSRTKFLVLDEAD 215 (493)
Q Consensus 155 ~~~~~~~-----------~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~--------~~~l~~~~~vViDEah 215 (493)
....... ..................+++++|...+.......... .......++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111111 01111111222333567899999999998776543211 1223567899999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeeccc
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMT 247 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 247 (493)
++.... .+..++. .....+++|||||.
T Consensus 157 ~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 975432 1455555 45677999999986
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=5e-16 Score=160.46 Aligned_cols=312 Identities=19% Similarity=0.259 Sum_probs=213.8
Q ss_pred CCCcHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH-hccCCCce
Q 011100 81 RRPTPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA-LGSGLHLR 158 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~ 158 (493)
....|+|.++++.+.+. .++++.+|+|||||.|+.+.++. .....++++++|..+.+..+++.+.. +....|+.
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 34489999999998875 45999999999999998887776 22356899999999999988877754 55556889
Q ss_pred EEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHH------HHHHHHHh
Q 011100 159 CEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE------ELRVVFQC 232 (493)
Q Consensus 159 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~------~~~~i~~~ 232 (493)
++.++|..+... .+....+|+|+||+++..+ . ..+.+++.|.||+|.+.+. ++. .++.|...
T Consensus 1218 ~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-------~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1218 IVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-------SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred EEecCCccccch---HHhhhcceEEechhHHHHH-h-------hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHH
Confidence 988988876532 2345679999999997655 2 3678899999999987632 221 15666666
Q ss_pred CCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHH--------HHHHHHhhhhcCC
Q 011100 233 LPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVY--------LMHVLSKMEDMGI 304 (493)
Q Consensus 233 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~ 304 (493)
+.++.+++++|..+.+.- .+ ........++.....+.. .+...+..+........ ...+.+ ... ..
T Consensus 1286 ~~k~ir~v~ls~~lana~-d~--ig~s~~~v~Nf~p~~R~~-Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~-~a~-~~ 1359 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANAR-DL--IGASSSGVFNFSPSVRPV-PLEIHIQSVDISHFESRMLAMTKPTYTAIVR-HAG-NR 1359 (1674)
T ss_pred HHhheeEEEeehhhccch-hh--ccccccceeecCcccCCC-ceeEEEEEeccchhHHHHHHhhhhHHHHHHH-Hhc-CC
Confidence 677889999999887633 23 333333444444433222 22222222222211111 122222 222 34
Q ss_pred CeEEEEecchhhHHHHHHHHHhc----------------------CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL----------------------DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 362 (493)
++.+||+++++.|..++.-|-.+ .....+-|-+++..+...+-..|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 78999999999998777644321 12233338899999999999999999999999876
Q ss_pred CCCCCCCCCCcCeEEE----ec------CCCCCCcceeeccccccCCCCccEEEEEecccHHHHHH
Q 011100 363 VASRGLDIPTVDLVLN----YD------IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418 (493)
Q Consensus 363 ~~~~Gidi~~v~~Vi~----~~------~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 418 (493)
- ..|+-...--+|+. || .+....+.+|+.|+|.| .|.|++++...+..++++
T Consensus 1440 ~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1440 D-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred c-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 6 77887743333332 22 23346778999999988 588999998887766654
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.71 E-value=4.5e-16 Score=161.59 Aligned_cols=322 Identities=19% Similarity=0.143 Sum_probs=193.2
Q ss_pred HHHHcCCCCCcHHHHhhhhhhhc----CC--c--EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 74 TCKELGMRRPTPVQTHCIPKILE----GK--D--VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 74 ~l~~~g~~~~~~~Q~~~i~~i~~----~~--~--~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
.+++..-..-+.||-+|+..+.. .. - ++-.|.||+|||++ -.-|+..+.....+.+..|..-.|.|..|.-
T Consensus 400 ~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQTG 478 (1110)
T TIGR02562 400 YFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQTG 478 (1110)
T ss_pred hhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceeccch
Confidence 33333334467899999988654 11 1 56689999999987 5667778888777889999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCCCHHHHHH-------------------------------------------Hhc------
Q 011100 146 EQFKALGSGLHLRCEVVVGGMDLLTQAK-------------------------------------------SLM------ 176 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------------------------------~~~------ 176 (493)
+.+++...--+-.+.+++|+....+-.. .+.
T Consensus 479 da~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~ 558 (1110)
T TIGR02562 479 HALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEK 558 (1110)
T ss_pred HHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhh
Confidence 9998876544456667777643211110 000
Q ss_pred --CCCcEEEECcchHHHHHhcCC--CCCCccC--CcceEeeccccccccCCCHHHHHHHHHhCC-cCCceeeeeecccch
Q 011100 177 --NRPHVVIATPGRIKVLLEEDP--DIPPVFS--RTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFSATMTSD 249 (493)
Q Consensus 177 --~~~~Iiv~Tp~~l~~~l~~~~--~~~~~l~--~~~~vViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~ 249 (493)
-...|+|||++.++....... .....+- .-+.|||||+|.+-...+ ..+..++..+. -+.++++||||+|+.
T Consensus 559 rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 559 TLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPA 637 (1110)
T ss_pred hhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 013799999999877663221 1111110 124699999997543322 22333333211 367899999999986
Q ss_pred HHHHHH-Hh----------cC---Cc--eEEeccccc-----------------------------cccccceEEEEEec
Q 011100 250 LQTLLE-LS----------AN---KA--YFYEAYEGF-----------------------------KTVETLKQQYIFIP 284 (493)
Q Consensus 250 ~~~~~~-~~----------~~---~~--~~~~~~~~~-----------------------------~~~~~~~~~~~~~~ 284 (493)
+...+. .+ .+ .+ +...-.+++ ..+....-..+.++
T Consensus 638 l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~ 717 (1110)
T TIGR02562 638 LVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLS 717 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecC
Confidence 543221 11 11 11 111110100 00111111222333
Q ss_pred CCcch------HHHHHHHH---hhh------hc-CCCe---EEEEecchhhHHHHHHHHHhc------CCceeeccCCCC
Q 011100 285 KNVKD------VYLMHVLS---KME------DM-GIRS---AIIFVSTCRSCHLLSLLLEEL------DQEAVALHSFKS 339 (493)
Q Consensus 285 ~~~~~------~~l~~~~~---~~~------~~-~~~~---~lVf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~ 339 (493)
..... .+...+.. .+. .. ..++ .+|-+++++.+..++..|... .+.+++||+...
T Consensus 718 ~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~ 797 (1110)
T TIGR02562 718 SLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDP 797 (1110)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccCh
Confidence 22110 11111111 111 00 1122 578888888888888888765 245788999998
Q ss_pred HHHHHHHHHHh----------------------hc----CCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeecc
Q 011100 340 QSQRLSALHRF----------------------KS----GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVG 393 (493)
Q Consensus 340 ~~~r~~~~~~f----------------------~~----g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~G 393 (493)
...|..+++.. .+ +...|+|+|.+++.|+|+ +.+++|- -|.+..+.+|++|
T Consensus 798 l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aG 874 (1110)
T TIGR02562 798 LLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAG 874 (1110)
T ss_pred HHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhh
Confidence 88777666443 12 467899999999999999 7887775 3445889999999
Q ss_pred ccccCCC
Q 011100 394 RTARAGR 400 (493)
Q Consensus 394 R~gR~g~ 400 (493)
|+.|.|.
T Consensus 875 R~~R~~~ 881 (1110)
T TIGR02562 875 RVNRHRL 881 (1110)
T ss_pred ccccccc
Confidence 9999875
No 149
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.66 E-value=1.3e-14 Score=136.89 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=92.0
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC-CCeE-EEEcCCCCCCCCCCCcCeEEEecCCC
Q 011100 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG-QATI-LLATDVASRGLDIPTVDLVLNYDIPR 383 (493)
Q Consensus 306 ~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidi~~v~~Vi~~~~p~ 383 (493)
+.|||..-....+.+...|.+.|+.++-+.|+|++..|..+++.|.+. +++| |++-.+.+..+|+-...+|+.+|+.|
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 467777777777777888888899999999999999999999999975 5665 55668888999999999999999999
Q ss_pred CCCcceeeccccccCCC--CccEEEEEecccH
Q 011100 384 YPRDYVHRVGRTARAGR--GGLAVSFVTQNDV 413 (493)
Q Consensus 384 s~~~y~qr~GR~gR~g~--~g~~~~~~~~~~~ 413 (493)
++..-.|.-.|.+|.|+ +-.++.|+.++..
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 99999999999999996 5667888877654
No 150
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.65 E-value=1.5e-14 Score=141.63 Aligned_cols=127 Identities=19% Similarity=0.284 Sum_probs=111.3
Q ss_pred CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCe-EEEEcCC
Q 011100 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT-ILLATDV 363 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~T~~ 363 (493)
...+...|..++.++...+ .++|+|+...+..+.+.++|...++....+.|.....+|..++.+|+..++- .|++|.+
T Consensus 1026 dSgKL~~LDeLL~kLkaeg-HRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEG-HRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred cccceeeHHHHHHHhhcCC-ceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 3445666778888887776 8999999999999999999999999999999999999999999999987654 5779999
Q ss_pred CCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCc--cEEEEEeccc
Q 011100 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGG--LAVSFVTQND 412 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g--~~~~~~~~~~ 412 (493)
.+-|||+...+.||+||..|++..-.|...||+|.|+.- .++-++..+.
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 999999999999999999999999999999999999854 4555666554
No 151
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=9.7e-14 Score=146.77 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=81.2
Q ss_pred HHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCc-eeeccCCCCHHHHHHHHHHhhcCCC-eEEEEcCCCCCCCCC
Q 011100 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE-AVALHSFKSQSQRLSALHRFKSGQA-TILLATDVASRGLDI 370 (493)
Q Consensus 293 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidi 370 (493)
...+..+....++++|||++|.+..+.++..+...... ....+|..+ +...++.|..+.- .++|+|..+++|||+
T Consensus 468 ~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 468 AAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 33344444444578999999999999999999876653 344455444 3477888887544 899999999999999
Q ss_pred CC--cCeEEEecCCCC-C-----------------------------CcceeeccccccCCCCccEEEEEec
Q 011100 371 PT--VDLVLNYDIPRY-P-----------------------------RDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 371 ~~--v~~Vi~~~~p~s-~-----------------------------~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
|+ ...||...+|.- + ....|.+||+-|.-.+.-++++++.
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 97 467888887753 1 1247999999996444333444433
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.61 E-value=1.7e-13 Score=141.14 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=98.0
Q ss_pred EEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHH----HhcC
Q 011100 102 GLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK----SLMN 177 (493)
Q Consensus 102 v~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~ 177 (493)
..+.+|||||.+|+-.+-..+.. |..+||++|...|+.|+.+.|+..+. +..+..++++.+..+... ...+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 33446999999999988888777 77899999999999999999998874 156788888876554433 3356
Q ss_pred CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc--cC-CC---HHHHHHHHHhCCcCCceeeeeecccchHH
Q 011100 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL--DV-GF---EEELRVVFQCLPKNRQTLLFSATMTSDLQ 251 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~--~~-~~---~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 251 (493)
..+|+|||- +..+..+.++++|||||=|.-. +. .. ...+.. ++....+..+++.|||++ ++
T Consensus 240 ~~~IViGtR----------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPS--le 306 (665)
T PRK14873 240 QARVVVGTR----------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHART--AE 306 (665)
T ss_pred CCcEEEEcc----------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCC--HH
Confidence 689999993 2235668999999999999532 21 11 122322 233335788999999986 44
Q ss_pred HHHHHh
Q 011100 252 TLLELS 257 (493)
Q Consensus 252 ~~~~~~ 257 (493)
.+....
T Consensus 307 s~~~~~ 312 (665)
T PRK14873 307 AQALVE 312 (665)
T ss_pred HHHHHh
Confidence 444433
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=8.8e-16 Score=116.17 Aligned_cols=81 Identities=48% Similarity=0.790 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccC
Q 011100 319 LLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARA 398 (493)
Q Consensus 319 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~ 398 (493)
.++..|...++.+..+||+++..+|..++..|+++...+||+|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011100 399 G 399 (493)
Q Consensus 399 g 399 (493)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=6.8e-13 Score=139.30 Aligned_cols=113 Identities=19% Similarity=0.340 Sum_probs=77.4
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhh----cCCCeEEEEcCCCCCCCC
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK----SGQATILLATDVASRGLD 369 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~~~Gid 369 (493)
..+..+...+ +.++||++|.+..+.++..|..........++. ..+..+++.|+ .|+..||++|..+.+|||
T Consensus 525 ~~i~~l~~~~-gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 525 EFLPELLEKH-KGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHHHhcC-CCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccccc
Confidence 3333333433 568999999999999999887532223444553 24667776666 467889999999999999
Q ss_pred CCC--cCeEEEecCCCC-CC-----------------------------cceeeccccccCCCCccEEEEEec
Q 011100 370 IPT--VDLVLNYDIPRY-PR-----------------------------DYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 370 i~~--v~~Vi~~~~p~s-~~-----------------------------~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
+|+ +++||...+|.. +. .+.|.+||.-|...+--++++++.
T Consensus 601 ~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 601 LPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred CCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 997 788998887743 21 236888999997554333444443
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.60 E-value=7.9e-14 Score=143.02 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=107.2
Q ss_pred cchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCC--CeEEEEcCCC
Q 011100 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ--ATILLATDVA 364 (493)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~ 364 (493)
.|...|.-++..+...+ +++|||+...+..+.|..+|.-.|+....+.|...-++|...+++|+... +..|++|...
T Consensus 1260 GKLQtLAiLLqQLk~eg-hRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEG-HRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred chHHHHHHHHHHHHhcC-ceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 45666777888888877 89999999999999999999999999999999999999999999999754 3567799999
Q ss_pred CCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCcc--EEEEEecc
Q 011100 365 SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGL--AVSFVTQN 411 (493)
Q Consensus 365 ~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~--~~~~~~~~ 411 (493)
+.|||+-+.|.||+||..||+.--.|.-.|++|.|+.-. .|-|++.+
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999999999887777778888776544 45566654
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=4e-13 Score=142.15 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=63.3
Q ss_pred cCCCCCcHHHHhhhhhhh----cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 78 LGMRRPTPVQTHCIPKIL----EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
+.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.+++......+...++++++.|.+-..|+.++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 578878999998887654 57889999999999999999999987765544578999999999999999999885
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.58 E-value=5.6e-13 Score=128.94 Aligned_cols=293 Identities=19% Similarity=0.230 Sum_probs=200.1
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccC-------------CCce------EEEE-EcCCCHHHHHHHhcC---------
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSG-------------LHLR------CEVV-VGGMDLLTQAKSLMN--------- 177 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~------~~~~-~g~~~~~~~~~~~~~--------- 177 (493)
..++||||+|+|..|.++.+.+..+... +|+. ...- ..+....+....+.+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4688999999999999999988887644 1100 0000 000000111111111
Q ss_pred ---------------CCcEEEECcchHHHHHhcC---CCCCCccCCcceEeeccccccc--cCCCHHHHHHHHHhCCc--
Q 011100 178 ---------------RPHVVIATPGRIKVLLEED---PDIPPVFSRTKFLVLDEADRVL--DVGFEEELRVVFQCLPK-- 235 (493)
Q Consensus 178 ---------------~~~Iiv~Tp~~l~~~l~~~---~~~~~~l~~~~~vViDEah~~~--~~~~~~~~~~i~~~~~~-- 235 (493)
..||||++|=-|...+... ..-..+|+.+.++|+|.||.++ +|.+...+-..+...|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 3599999999988888741 2224568999999999999765 44444444444444442
Q ss_pred -------------------CCceeeeeecccchHHHHHHH-hcCCceEEecccc-------ccccccceEEEEEecCCcc
Q 011100 236 -------------------NRQTLLFSATMTSDLQTLLEL-SANKAYFYEAYEG-------FKTVETLKQQYIFIPKNVK 288 (493)
Q Consensus 236 -------------------~~~~i~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 288 (493)
-+|++++|+...+++..+... +.|..-.+..... ......+.|.+..++....
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 269999999999988888876 3332222221111 1234556677766553221
Q ss_pred ----hHH----HHHHHHhhh-hcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEE
Q 011100 289 ----DVY----LMHVLSKME-DMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359 (493)
Q Consensus 289 ----~~~----l~~~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 359 (493)
+.. ...++-.+. ....+.+|||+++.-.-..+..+|++.++..+.+|-..+..+-..+-..|..|+.++|+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 111 122444444 45557899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC--CCCCCCCCcCeEEEecCCCCCCcceeeccccccCC------CCccEEEEEecccHHHHHHH
Q 011100 360 ATDVA--SRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG------RGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 360 ~T~~~--~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g------~~g~~~~~~~~~~~~~~~~~ 419 (493)
.|.-+ -+-..+.++++||.|++|..+.-|...++-.+... ....|.++++.-|.-.++.|
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99854 46678889999999999999987766654443332 25789999999887655554
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.56 E-value=1.4e-13 Score=135.04 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=91.7
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhc--CCCeEE-EEcCCCCCCCCC
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS--GQATIL-LATDVASRGLDI 370 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vl-v~T~~~~~Gidi 370 (493)
..+.........+++|...-......+...+.+.|.....+||.....+|..+++.|.. |..+|+ ++-.+.+.|+|+
T Consensus 736 ~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL 815 (901)
T KOG4439|consen 736 EILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNL 815 (901)
T ss_pred HHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeee
Confidence 33333333344566666666666677788899999999999999999999999999985 445554 466888999999
Q ss_pred CCcCeEEEecCCCCCCcceeeccccccCCCCccEEEE
Q 011100 371 PTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSF 407 (493)
Q Consensus 371 ~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~ 407 (493)
-+.+|+|..|+.|++.--.|.+.|.-|.|++..+++.
T Consensus 816 ~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 816 IGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999889999999999998776543
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.53 E-value=1.7e-13 Score=139.17 Aligned_cols=287 Identities=16% Similarity=0.216 Sum_probs=178.5
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc-C
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM-N 177 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 177 (493)
-.+|.+|+|||||.+..-++-..+.. .+.++|+|...++|+.++...++...-. |+. .+.+... ..+. .
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~----~~i~~~ 120 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDD----YIIDGR 120 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeecccc----cccccc
Confidence 37889999999998765554444332 2668999999999999999988765211 221 1111110 0011 1
Q ss_pred CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHH-------HHHHhCCcCCceeeeeecccchH
Q 011100 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR-------VVFQCLPKNRQTLLFSATMTSDL 250 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~-------~i~~~~~~~~~~i~~SAT~~~~~ 250 (493)
..+-+++..+.|..+.. ..+.++++|||||+-.+++.-+...++ .+...+.....+|++-|++....
T Consensus 121 ~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred ccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 35677777777655432 236778999999999877654433322 23334456778999999999988
Q ss_pred HHHHHHhcCCceEEeccccccccccceEEEEEec------------------------------------CCcchHHHHH
Q 011100 251 QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIP------------------------------------KNVKDVYLMH 294 (493)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~l~~ 294 (493)
-+++........+..+...+....-.......++ ..........
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~ 274 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSE 274 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHH
Confidence 8877776544433333332222111111111111 0111223333
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc-
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTV- 373 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v- 373 (493)
+...+.. + .++.||+.|...++.++++.......+..++|.-+..+.+ . =++++|+|-|.++..|+++...
T Consensus 275 L~~~L~~-g-knIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 275 LLARLNA-G-KNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHhC-C-CcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchhh
Confidence 4444433 2 5788999999999999999999988999998866655321 2 2579999999999999999643
Q ss_pred -CeEEEecCC--CC--CCcceeeccccccCCCCccEEEEEec
Q 011100 374 -DLVLNYDIP--RY--PRDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 374 -~~Vi~~~~p--~s--~~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
+-|+-|=-| .. +.+..|++||+-.. .....+++++.
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~ 387 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDA 387 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEec
Confidence 445555223 22 33579999997554 34555555543
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.48 E-value=8.2e-13 Score=145.30 Aligned_cols=325 Identities=22% Similarity=0.207 Sum_probs=205.7
Q ss_pred CCCCcHHHHhhhhhhhc-----CCcEEEEccCCCCchhHhHHHHHHHhhcCCC-CeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 80 MRRPTPVQTHCIPKILE-----GKDVLGLAQTGSGKTAAFALPILHRLAEDPY-GVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~-----~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
...++++|.+.+.++.. +.+.+++...|.|||+..+..+...+..... .+.++|+||+ +++.+|.+++.++..
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~ 414 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCc
Confidence 35588999999987552 5678889999999998877666553333322 3579999998 577889999988876
Q ss_pred CCCceEEEEEcCCCH----HHHHHHhcC-----CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHH
Q 011100 154 GLHLRCEVVVGGMDL----LTQAKSLMN-----RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224 (493)
Q Consensus 154 ~~~~~~~~~~g~~~~----~~~~~~~~~-----~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~ 224 (493)
.+.. +...+|.... ......+.. ..+++++|++.+........ ...-..+.++|+||+|.+.+..- .
T Consensus 415 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~--~l~~~~~~~~v~DEa~~ikn~~s-~ 490 (866)
T COG0553 415 DLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHG--GLKKIEWDRVVLDEAHRIKNDQS-S 490 (866)
T ss_pred cccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHH--HHhhceeeeeehhhHHHHhhhhh-H
Confidence 5443 6666666541 223332322 27999999988877321100 11123567899999999766421 1
Q ss_pred HHHHHHHhCCcCCceeeeeecc-cchHHHHHHHhc---CCceEE------------------------------------
Q 011100 225 ELRVVFQCLPKNRQTLLFSATM-TSDLQTLLELSA---NKAYFY------------------------------------ 264 (493)
Q Consensus 225 ~~~~i~~~~~~~~~~i~~SAT~-~~~~~~~~~~~~---~~~~~~------------------------------------ 264 (493)
....+. .+.... .+++|+|| .+.+..+..+.. ......
T Consensus 491 ~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 491 EGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 111111 111111 24444444 111111100000 000000
Q ss_pred -----------e--cc----------------c----------c-----cc------cc------------------ccc
Q 011100 265 -----------E--AY----------------E----------G-----FK------TV------------------ETL 276 (493)
Q Consensus 265 -----------~--~~----------------~----------~-----~~------~~------------------~~~ 276 (493)
. +. . . .. .. ..+
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 0 00 0 0 00 00 000
Q ss_pred eEEEEEec---------------------------------CC-cchHHHHHHH-HhhhhcCC-CeEEEEecchhhHHHH
Q 011100 277 KQQYIFIP---------------------------------KN-VKDVYLMHVL-SKMEDMGI-RSAIIFVSTCRSCHLL 320 (493)
Q Consensus 277 ~~~~~~~~---------------------------------~~-~~~~~l~~~~-~~~~~~~~-~~~lVf~~~~~~~~~l 320 (493)
. .++..| .. .+...+..++ ......+. .+++||++.......+
T Consensus 649 r-~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 649 R-QICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred H-HhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0 000000 00 3444555566 45555552 2899999999999999
Q ss_pred HHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC--CCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccC
Q 011100 321 SLLLEELDQEAVALHSFKSQSQRLSALHRFKSG--QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARA 398 (493)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~ 398 (493)
...|...++....++|.++...|...++.|.++ ..-+++++.+++.|+|+...++||+||+.|++....|...|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999998899999999999999999999986 445677888999999999999999999999999999999999999
Q ss_pred CCCccE--EEEEeccc
Q 011100 399 GRGGLA--VSFVTQND 412 (493)
Q Consensus 399 g~~g~~--~~~~~~~~ 412 (493)
|+...+ +-++..+.
T Consensus 808 gQ~~~v~v~r~i~~~t 823 (866)
T COG0553 808 GQKRPVKVYRLITRGT 823 (866)
T ss_pred cCcceeEEEEeecCCc
Confidence 987665 44455544
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.48 E-value=1.3e-12 Score=132.03 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=102.8
Q ss_pred cchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc----------------------CCceeeccCCCCHHHHH
Q 011100 287 VKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL----------------------DQEAVALHSFKSQSQRL 344 (493)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~ 344 (493)
.+...|+.++......+ .++|||..+....+.+..+|.-. |.....+.|.....+|.
T Consensus 1126 gKmiLLleIL~mceeIG-DKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIG-DKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred cceehHHHHHHHHHHhc-ceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 34556777888777777 89999999999999999988642 34567789999999999
Q ss_pred HHHHHhhcC----CCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEE
Q 011100 345 SALHRFKSG----QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFV 408 (493)
Q Consensus 345 ~~~~~f~~g----~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~ 408 (493)
.+...|++- ..-.||+|.+.+.|||+-.++.||+||..|+|.--+|.|=|+-|.|+..-||++-
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 999999863 2347999999999999999999999999999999999999999999977776653
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.48 E-value=8.9e-13 Score=134.96 Aligned_cols=322 Identities=20% Similarity=0.206 Sum_probs=200.0
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|.. ++.+|. +-.+.-...-++-+.||-|||+++.+|++-..+. |..+.+++..--||.--.+++..++..+|+
T Consensus 77 lg~~-~~dVQl--iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 77 LGMR-HFDVQL--LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred cCCC-hhhHHH--hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 3444 555664 4444444557899999999999999999876665 556889999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHH-HHHhcC---CCCCCccCCcceEeeccccccc-cC--------C---
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-VLLEED---PDIPPVFSRTKFLVLDEADRVL-DV--------G--- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~---~~~~~~l~~~~~vViDEah~~~-~~--------~--- 221 (493)
.+++...+....+.... -.+||.++|-..|- +.++.. ..-......+.+.|+||+|.++ +. |
T Consensus 151 svG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~ 228 (822)
T COG0653 151 SVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAE 228 (822)
T ss_pred ceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccc
Confidence 99999998876555544 46899999976541 111111 0001234467889999999654 21 1
Q ss_pred C----HHHHHHHHHhCCcC-------------------------------------------------------------
Q 011100 222 F----EEELRVVFQCLPKN------------------------------------------------------------- 236 (493)
Q Consensus 222 ~----~~~~~~i~~~~~~~------------------------------------------------------------- 236 (493)
. ...+..+...+...
T Consensus 229 ~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIV 308 (822)
T COG0653 229 DSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIV 308 (822)
T ss_pred cCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEE
Confidence 1 11122222111100
Q ss_pred --------------------------------------------------------CceeeeeecccchHHHHHHHhcCC
Q 011100 237 --------------------------------------------------------RQTLLFSATMTSDLQTLLELSANK 260 (493)
Q Consensus 237 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 260 (493)
..+.+||+|.......+...+...
T Consensus 309 rd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~ 388 (822)
T COG0653 309 RDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD 388 (822)
T ss_pred ecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc
Confidence 012333333333333333333222
Q ss_pred ceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCH
Q 011100 261 AYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQ 340 (493)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 340 (493)
...+....... ..-....++.....+...+...+......+ .|+||-+.+++..+.++..|.+.+++..++.+.-.
T Consensus 389 vv~iPTnrp~~--R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~g-qPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h- 464 (822)
T COG0653 389 VVVIPTNRPII--RLDEPDLVYKTEEEKFKAIVEDIKERHEKG-QPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH- 464 (822)
T ss_pred eeeccCCCccc--CCCCccccccchHHHHHHHHHHHHHHHhcC-CCEEEcCcceecchhHHHHHHhcCCCceeeccccH-
Confidence 22221111111 111111122223344555555555555555 89999999999999999999999999988888655
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC-----------eEEEecCCCCCCcceeeccccccCCCCccEEEEEe
Q 011100 341 SQRLSALHRFKSGQATILLATDVASRGLDIPTVD-----------LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~-----------~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~ 409 (493)
.++.-+-...-..-.|-|||++++||-||.--. +||-.....|..---|.-||+||.|-+|.+-.|++
T Consensus 465 -~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 465 -AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred -HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 344333333333446889999999999995211 45555544444444588899999999999988877
Q ss_pred ccc
Q 011100 410 QND 412 (493)
Q Consensus 410 ~~~ 412 (493)
-+|
T Consensus 544 leD 546 (822)
T COG0653 544 LED 546 (822)
T ss_pred hHH
Confidence 554
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.44 E-value=4.2e-11 Score=129.20 Aligned_cols=299 Identities=18% Similarity=0.196 Sum_probs=168.5
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc-
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM- 176 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 176 (493)
+..+|+--||||||++.. .+...+...+..+.+++|+-++.|-.|+.+.|..+........ ...+..+-...+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~-~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF-KLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHH-HHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 459999999999998844 4444455446688999999999999999999999865432222 2223333333333
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCc-ceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHH--H
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRT-KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQT--L 253 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~-~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~--~ 253 (493)
....|+|+|.++|........... +.+- =+||+||||+-- ++.....+-..+ ++...++||+||...-.. .
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~--~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELEL--LKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred CCCcEEEEEecccchhhhcccccc--cCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCccccccccch
Confidence 235899999999988776541111 2222 258999999842 334444444444 357899999998642211 1
Q ss_pred HHHhcCCceEEeccccccccccceEEEEEe-c-----CCcc--------------------------------------h
Q 011100 254 LELSANKAYFYEAYEGFKTVETLKQQYIFI-P-----KNVK--------------------------------------D 289 (493)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~--------------------------------------~ 289 (493)
...+......+...........+...|... . .... .
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 222222222222222222222222222111 0 0000 0
Q ss_pred HHHHHHHHhhh--hcCCCeEEEEecchhhHHHHHHHHHhcCC---------c-eeec-------------cCCCCHHHHH
Q 011100 290 VYLMHVLSKME--DMGIRSAIIFVSTCRSCHLLSLLLEELDQ---------E-AVAL-------------HSFKSQSQRL 344 (493)
Q Consensus 290 ~~l~~~~~~~~--~~~~~~~lVf~~~~~~~~~l~~~l~~~~~---------~-~~~~-------------~~~~~~~~r~ 344 (493)
.....+..+.. .....++++.|.++..+..+......... . +..+ |... ...+.
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~ 581 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKK 581 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHh
Confidence 00011111111 22336788888887744444433322100 0 0000 1111 12223
Q ss_pred HHHHHh--hcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCC----CccEEEEEe
Q 011100 345 SALHRF--KSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR----GGLAVSFVT 409 (493)
Q Consensus 345 ~~~~~f--~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~----~g~~~~~~~ 409 (493)
....+| .....++||.++++-+|+|.|.++++.. |-|.-....+|.+-|+.|.-. .|..+.|+.
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 333443 3467899999999999999998887765 788878889999999999542 244444444
No 164
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=8.8e-12 Score=119.01 Aligned_cols=338 Identities=21% Similarity=0.266 Sum_probs=214.6
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEE-ccCCCCc--hhHhHHHHHHHhhc----------------------------CCCCe
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGL-AQTGSGK--TAAFALPILHRLAE----------------------------DPYGV 129 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~-a~TGsGK--Tl~~~l~~l~~l~~----------------------------~~~~~ 129 (493)
..+|+.|.+.+..+.+.+|++.. ...+.|+ +-.|.+-+++++.. +-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 56999999999999999997753 3334555 45666777766631 11257
Q ss_pred EEEEEcccHHHHHHHHHHHHHhccCCCc---------eEE----------------------EEEcCCCHH--------H
Q 011100 130 LALVITPTRELAYQLAEQFKALGSGLHL---------RCE----------------------VVVGGMDLL--------T 170 (493)
Q Consensus 130 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~---------~~~----------------------~~~g~~~~~--------~ 170 (493)
+||||||+|+-|-.+...+..+..+.+- +.. ++.|.++.. .
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999988887432211 000 111111100 0
Q ss_pred H-HHH--hcCCCcEEEECcchHHHHHhcCC---CCCCccCCcceEeeccccccccCCCHHHHHHHHHhC---Cc------
Q 011100 171 Q-AKS--LMNRPHVVIATPGRIKVLLEEDP---DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL---PK------ 235 (493)
Q Consensus 171 ~-~~~--~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~---~~------ 235 (493)
. ... -....||+||+|=-|..++.... .-.-+++.+.++|||-||.++...| ..+..++..+ |.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 0 000 02346999999999988887322 2234578899999999998775544 3333444433 21
Q ss_pred ---------------CCceeeeeecccchHHHHHHHhcCC----ceEEeccccc---cccccceEEEEEec----CCcch
Q 011100 236 ---------------NRQTLLFSATMTSDLQTLLELSANK----AYFYEAYEGF---KTVETLKQQYIFIP----KNVKD 289 (493)
Q Consensus 236 ---------------~~~~i~~SAT~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~ 289 (493)
-+|+++||+--......+....... .....+.... ...-.+.|.+..+. ....+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 1478888887665555544433221 1111111110 00111112111111 11111
Q ss_pred HHH----HHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCC-
Q 011100 290 VYL----MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVA- 364 (493)
Q Consensus 290 ~~l----~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~- 364 (493)
... ..++-.+.......+|||.++.-.-.++..++++.++....+|...+..+-..+-+-|-.|+..||+-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 111 222223333334568999999999999999999999888888888788887788888999999999999865
Q ss_pred -CCCCCCCCcCeEEEecCCCCCCcc---eeeccccccCCC----CccEEEEEecccHHHHHHH
Q 011100 365 -SRGLDIPTVDLVLNYDIPRYPRDY---VHRVGRTARAGR----GGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 365 -~~Gidi~~v~~Vi~~~~p~s~~~y---~qr~GR~gR~g~----~g~~~~~~~~~~~~~~~~~ 419 (493)
-+-.++.+|..||.|.+|.+|.-| +.+.+|+.-.|+ .-.|.++++.-|.-.+..+
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 477899999999999999998766 667777655443 3568889999887655544
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.37 E-value=5.4e-12 Score=120.75 Aligned_cols=154 Identities=21% Similarity=0.156 Sum_probs=93.7
Q ss_pred HHHhhhhhhh-------------cCCcEEEEccCCCCchhHhHHHHHHHhhcCCC--CeEEEEEcccHHHHHHHHHHHHH
Q 011100 86 VQTHCIPKIL-------------EGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 86 ~Q~~~i~~i~-------------~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
+|.+++..++ ..+.+|++.++|+|||+..+..+.......+. ...+|||||. .+..||..++..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777776653 23569999999999998866655433322221 1259999999 788999999999
Q ss_pred hccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHH-----HHHhcCCCCCCccCCcceEeeccccccccCCCHHH
Q 011100 151 LGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIK-----VLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225 (493)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-----~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~ 225 (493)
++....+++....|+..............+++|+|++.+. ...... .--++++||+||+|.+.+.. ..
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l-----~~~~~~~vIvDEaH~~k~~~--s~ 152 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDL-----KQIKWDRVIVDEAHRLKNKD--SK 152 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHH-----HTSEEEEEEETTGGGGTTTT--SH
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccc-----ccccceeEEEeccccccccc--cc
Confidence 9865456777777665222222233456899999999887 111110 01237889999999985543 33
Q ss_pred HHHHHHhCCcCCceeeeeecccc
Q 011100 226 LRVVFQCLPKNRQTLLFSATMTS 248 (493)
Q Consensus 226 ~~~i~~~~~~~~~~i~~SAT~~~ 248 (493)
....+..+. ....+++||||..
T Consensus 153 ~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 153 RYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHCCC-ECEEEEE-SS-SS
T ss_pred ccccccccc-cceEEeecccccc
Confidence 333344454 6678889999754
No 166
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.35 E-value=1.3e-11 Score=124.35 Aligned_cols=315 Identities=18% Similarity=0.224 Sum_probs=189.6
Q ss_pred HHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCC--eEEEEEcccHHHHHHHHHHHHH-hccCCCceEEEEE
Q 011100 87 QTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG--VLALVITPTRELAYQLAEQFKA-LGSGLHLRCEVVV 163 (493)
Q Consensus 87 Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~ 163 (493)
-...+..+.+++-+++.+.||+|||..+...+|..+..+..+ ..+.+.-|++..+.-+.+++.. .+...+-.|+.
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy-- 460 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY-- 460 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccc--
Confidence 344555566677799999999999999999999998876443 3367777998887777766543 33322222211
Q ss_pred cCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc-cCCCHHHHHHHHHhCCcCCceeee
Q 011100 164 GGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCLPKNRQTLLF 242 (493)
Q Consensus 164 g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~ 242 (493)
+...........-.|+.+|-+.++..+.+. +..+.++++||.|..- +..|...+..-+.......++++|
T Consensus 461 ---~vRf~Sa~prpyg~i~fctvgvllr~~e~g------lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 461 ---NVRFDSATPRPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred ---cccccccccccccceeeeccchhhhhhhhc------ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 111111111234578899999999888776 5677899999999632 223333333322333345667777
Q ss_pred eecccchHH--------------------HHHHHhcCCceEEec-----------ccccccccc-ceEEEE-Eec-----
Q 011100 243 SATMTSDLQ--------------------TLLELSANKAYFYEA-----------YEGFKTVET-LKQQYI-FIP----- 284 (493)
Q Consensus 243 SAT~~~~~~--------------------~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~-~~~----- 284 (493)
|||+..+.- .+.....+....... ......... -...+- .+.
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 777654321 111100000000000 000000000 000000 000
Q ss_pred ----------CCc-chHHHHHHHHhhhhcC-CCeEEEEecchhhHHHHHHHHHhc-------CCceeeccCCCCHHHHHH
Q 011100 285 ----------KNV-KDVYLMHVLSKMEDMG-IRSAIIFVSTCRSCHLLSLLLEEL-------DQEAVALHSFKSQSQRLS 345 (493)
Q Consensus 285 ----------~~~-~~~~l~~~~~~~~~~~-~~~~lVf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~ 345 (493)
... ....+..++......+ .+-++||.+.......|..+|... ...+...|+.....+..+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 000 1111222222222222 256899999999998888887654 346788899999999999
Q ss_pred HHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCC------------------CCCCcceeeccccccCCCCccEEEE
Q 011100 346 ALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIP------------------RYPRDYVHRVGRTARAGRGGLAVSF 407 (493)
Q Consensus 346 ~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p------------------~s~~~y~qr~GR~gR~g~~g~~~~~ 407 (493)
+.+....|..+++++|+++...+.+.++..||+.+.- .+.....||.||+||. ++|.|..+
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 9999999999999999999999999887777764422 1334568999999996 77999888
Q ss_pred EecccH
Q 011100 408 VTQNDV 413 (493)
Q Consensus 408 ~~~~~~ 413 (493)
++..-.
T Consensus 771 cs~arF 776 (1282)
T KOG0921|consen 771 CSRARF 776 (1282)
T ss_pred cHHHHH
Confidence 876443
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.33 E-value=4.5e-12 Score=102.29 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=78.6
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 175 (493)
+|+-.++-..+|+|||.-.+--++...... +.++|||.|||.++..+.+.++.. ++++. +.-... ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~~-----~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARMR-----TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS--------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeeec-----cc
Confidence 345578899999999987555555433332 678999999999999888877543 33322 111111 12
Q ss_pred cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC--CHHHHHHHHHhCCcCCceeeeeecccchH
Q 011100 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG--FEEELRVVFQCLPKNRQTLLFSATMTSDL 250 (493)
Q Consensus 176 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 250 (493)
.++.-|-|+|...+...+... ..+.+++++|+||+|..-... +...+... ... ....++++|||+|...
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCC
Confidence 356678899999887776553 235789999999999642211 11122222 111 2357999999998644
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.19 E-value=2e-10 Score=107.87 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=58.5
Q ss_pred cCCCCCcHHHHhhh----hhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC---CeEEEEEcccHHHHHHHHHHHHH
Q 011100 78 LGMRRPTPVQTHCI----PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY---GVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i----~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
+.|. |+|.|.+.+ ..+..|.++++.+|||+|||+++++|++..+...+. +.+++|+++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4566 699999954 445668899999999999999999999876654332 23799999999999988777766
Q ss_pred h
Q 011100 151 L 151 (493)
Q Consensus 151 ~ 151 (493)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.19 E-value=2e-10 Score=107.87 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=58.5
Q ss_pred cCCCCCcHHHHhhh----hhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC---CeEEEEEcccHHHHHHHHHHHHH
Q 011100 78 LGMRRPTPVQTHCI----PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY---GVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i----~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
+.|. |+|.|.+.+ ..+..|.++++.+|||+|||+++++|++..+...+. +.+++|+++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4566 699999954 445668899999999999999999999876654332 23799999999999988777766
Q ss_pred h
Q 011100 151 L 151 (493)
Q Consensus 151 ~ 151 (493)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.14 E-value=5e-10 Score=102.23 Aligned_cols=133 Identities=26% Similarity=0.341 Sum_probs=98.8
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
.|+. |++.|.-++-.+..|+ |+...||-|||++..+|++..... |..|-|++.+..||..-++++..++..+|+
T Consensus 74 ~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 4554 9999998887776665 999999999999999998877776 677999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHH-HHhcCCCC---CCccCCcceEeeccccccc
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKV-LLEEDPDI---PPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~-~l~~~~~~---~~~l~~~~~vViDEah~~~ 218 (493)
.+....++.......... .++|+++|...+.- .++..... ......+.++||||+|.++
T Consensus 148 sv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999988765444433 46899999987643 33322111 1124678999999999765
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.00 E-value=9.3e-11 Score=120.60 Aligned_cols=168 Identities=21% Similarity=0.256 Sum_probs=123.0
Q ss_pred CCcHHHHhhhhhhhc-CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEE
Q 011100 82 RPTPVQTHCIPKILE-GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCE 160 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 160 (493)
.+.|.|.+.+-.+.. ..++++-+|||+|||++|.+.+...+...+ +.++++++|..+|+....+.+......-|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 466778777765544 456999999999999999999988877766 578999999999999988888877665589999
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC-------
Q 011100 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL------- 233 (493)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~------- 233 (493)
-++|+..... .-...++++|+||+++....+++.. ...+.+++.+|+||.|++.+ ++++.++.+....
T Consensus 1006 e~tgd~~pd~---~~v~~~~~~ittpek~dgi~Rsw~~-r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t 1080 (1230)
T KOG0952|consen 1006 ELTGDVTPDV---KAVREADIVITTPEKWDGISRSWQT-RKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQT 1080 (1230)
T ss_pred eccCccCCCh---hheecCceEEcccccccCccccccc-hhhhccccceeecccccccC-CCcceEEEEeeccccCcccc
Confidence 9999876531 1235689999999999888876654 45678999999999997654 3455554443222
Q ss_pred CcCCceeeeeecccc--hHHHHHH
Q 011100 234 PKNRQTLLFSATMTS--DLQTLLE 255 (493)
Q Consensus 234 ~~~~~~i~~SAT~~~--~~~~~~~ 255 (493)
++..+++++|.-+.+ ++..++.
T Consensus 1081 ~~~vr~~glsta~~na~dla~wl~ 1104 (1230)
T KOG0952|consen 1081 EEPVRYLGLSTALANANDLADWLN 1104 (1230)
T ss_pred CcchhhhhHhhhhhccHHHHHHhC
Confidence 234556666554433 4444443
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.96 E-value=3.9e-08 Score=98.34 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=90.7
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCC------------------ceeeccCCCCHHHHHHHHHHhhcC---CCeEEEEcCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQ------------------EAVALHSFKSQSQRLSALHRFKSG---QATILLATDV 363 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T~~ 363 (493)
.++|||..+......+.+.|....+ ....+.|..+..+|++.+.+|++- ..-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 5689999999999999998876522 233578888999999999999863 2357889999
Q ss_pred CCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
...|||+-..+-+|.||.-|++.--.|.+-|+-|-|+...|+++-.--|.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 99999999999999999999999999999999999998888777654443
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.74 E-value=1.1e-07 Score=100.36 Aligned_cols=146 Identities=15% Similarity=0.212 Sum_probs=87.4
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH---------HhccCCCceEEEEEcCC--
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK---------ALGSGLHLRCEVVVGGM-- 166 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~---------~~~~~~~~~~~~~~g~~-- 166 (493)
.++.+.++||+|||.+|+-.++......+ -.+.||+||+.+.-..+...+. .......+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 36899999999999999988877655543 4679999999998887765544 22222234444444332
Q ss_pred -----CHHHHHHHhc-------CCCcEEEECcchHHHHHh--cC------CCCCCccCCc----ceEeeccccccccCCC
Q 011100 167 -----DLLTQAKSLM-------NRPHVVIATPGRIKVLLE--ED------PDIPPVFSRT----KFLVLDEADRVLDVGF 222 (493)
Q Consensus 167 -----~~~~~~~~~~-------~~~~Iiv~Tp~~l~~~l~--~~------~~~~~~l~~~----~~vViDEah~~~~~~~ 222 (493)
........+. +...|+|+|.+.+..-.. .. ......++.+ -+||+||.|++...
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 1122222221 146899999887754211 00 0000112111 36999999998553
Q ss_pred HHHHHHHHHhCCcCCceeeeeecccc
Q 011100 223 EEELRVVFQCLPKNRQTLLFSATMTS 248 (493)
Q Consensus 223 ~~~~~~i~~~~~~~~~~i~~SAT~~~ 248 (493)
...+..| ..+.+.. ++.+|||.+.
T Consensus 217 ~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 2345555 3343222 5779999976
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.63 E-value=2.1e-07 Score=85.43 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=50.9
Q ss_pred CCcHHHHhhhhhhhcCCc-EEEEccCCCCchhHhHHHHHHHh------hcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 011100 82 RPTPVQTHCIPKILEGKD-VLGLAQTGSGKTAAFALPILHRL------AEDPYGVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~-~lv~a~TGsGKTl~~~l~~l~~l------~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
++++.|.+|+..++.... .+|.||+|+|||.+... ++..+ .....+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999998 99999999999965444 33333 1234477899999999999999988877
No 175
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.61 E-value=2.6e-05 Score=78.10 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=75.6
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCC-------ceeeccCCCCHHHHHHHHHHhh----cCCCeEEEEc--
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQ-------EAVALHSFKSQSQRLSALHRFK----SGQATILLAT-- 361 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T-- 361 (493)
.+..+...-++.+++|+++.+-...+.+.+.+.|+ ..+.+-..-+ -+.+++.|. .|.-.+|+|.
T Consensus 620 ~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVG 696 (821)
T KOG1133|consen 620 SISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVG 696 (821)
T ss_pred HHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEec
Confidence 33333333347799999999999999888887654 2233333333 344555554 3454566654
Q ss_pred CCCCCCCCCCC--cCeEEEecCCCC-C-------------------------------CcceeeccccccCCCCccEEEE
Q 011100 362 DVASRGLDIPT--VDLVLNYDIPRY-P-------------------------------RDYVHRVGRTARAGRGGLAVSF 407 (493)
Q Consensus 362 ~~~~~Gidi~~--v~~Vi~~~~p~s-~-------------------------------~~y~qr~GR~gR~g~~g~~~~~ 407 (493)
.-+++|||+.+ .+.||..++|.. . ...-|-||||-|.-++--+|++
T Consensus 697 GKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~L 776 (821)
T KOG1133|consen 697 GKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYL 776 (821)
T ss_pred cccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEE
Confidence 68899999987 678888888853 1 0125889999998777777777
Q ss_pred Eecc
Q 011100 408 VTQN 411 (493)
Q Consensus 408 ~~~~ 411 (493)
++..
T Consensus 777 lD~R 780 (821)
T KOG1133|consen 777 LDKR 780 (821)
T ss_pred ehhh
Confidence 7643
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.57 E-value=7.7e-07 Score=90.72 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCC--CCc-----------cEEEEEecccHHHHHHH
Q 011100 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAG--RGG-----------LAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 353 g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g--~~g-----------~~~~~~~~~~~~~~~~~ 419 (493)
...+.|++--++-+|+|=|+|=.++-.....|..+=+|.+||.-|.- +.| .-.+++...+.+++..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 35789999999999999999999999999989999999999999842 223 23456777888888877
Q ss_pred HHHhc
Q 011100 420 EAVVG 424 (493)
Q Consensus 420 ~~~~~ 424 (493)
.+...
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 76543
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.52 E-value=9.3e-08 Score=83.89 Aligned_cols=147 Identities=18% Similarity=0.252 Sum_probs=75.2
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH-------HHHHHhc
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA-------EQFKALG 152 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~-------~~~~~~~ 152 (493)
+...+..|..++..++...-+++.||.|||||+.++..+++.+... .-.+++|+-|..+....+- +.+..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS---------TTT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3457899999999999878899999999999999999998888773 3557888888765311110 0000000
Q ss_pred cCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHh
Q 011100 153 SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232 (493)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~ 232 (493)
..+--....+.+... ...+.....|-+.++..+. +. .+++ .+||+|||+.+ -...+..++.+
T Consensus 81 ~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-----Gr----t~~~-~~iIvDEaQN~----t~~~~k~ilTR 142 (205)
T PF02562_consen 81 RPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-----GR----TFDN-AFIIVDEAQNL----TPEELKMILTR 142 (205)
T ss_dssp HHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-----T------B-S-EEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-----Cc----cccc-eEEEEecccCC----CHHHHHHHHcc
Confidence 000000000001111 1112234456666543321 21 1222 68999999976 44788888999
Q ss_pred CCcCCceeeeeec
Q 011100 233 LPKNRQTLLFSAT 245 (493)
Q Consensus 233 ~~~~~~~i~~SAT 245 (493)
+..+.+++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888887765544
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.48 E-value=1.3e-06 Score=80.13 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=109.5
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhc----------CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILE----------GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 65 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----------~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
+.|++.++. .| .++..|.+++-...+ +.-+++-..||.||--...-.|+..+.+. ..++|++
T Consensus 26 ~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~r~vwv 97 (303)
T PF13872_consen 26 LHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RKRAVWV 97 (303)
T ss_pred cCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CCceEEE
Confidence 356665544 22 267788877754321 24588999999999988777788888874 3369999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCcc---------CC
Q 011100 135 TPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVF---------SR 205 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l---------~~ 205 (493)
..+..|-.+..+.+..++.. .+.+..+..-.. .....-...|+++|+..|...-.........+ +.
T Consensus 98 S~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~df 172 (303)
T PF13872_consen 98 SVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDF 172 (303)
T ss_pred ECChhhhhHHHHHHHHhCCC-cccceechhhcc----CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCC
Confidence 99999999999999988754 333332222100 00011245699999987766543221111111 11
Q ss_pred cceEeeccccccccCCC--------HHHHHHHHHhCCcCCceeeeeecccchH
Q 011100 206 TKFLVLDEADRVLDVGF--------EEELRVVFQCLPKNRQTLLFSATMTSDL 250 (493)
Q Consensus 206 ~~~vViDEah~~~~~~~--------~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 250 (493)
=.+||+||||.+.+..- +..+..+.+.+| +.+++.+|||-..+.
T Consensus 173 dgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep 224 (303)
T PF13872_consen 173 DGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEP 224 (303)
T ss_pred CceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCC
Confidence 24799999999877532 134445555664 677999999976543
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.48 E-value=6.7e-07 Score=79.24 Aligned_cols=123 Identities=21% Similarity=0.269 Sum_probs=72.6
Q ss_pred CCcHHHHhhhhhhhcCC--cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 82 RPTPVQTHCIPKILEGK--DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
+|++-|.+++..++.+. -.++.|+.|+|||.+ +..+...+... +.++++++||...+..+.+.. ++.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~-------~~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREKT-------GIEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHHH-------TS-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh-------Ccch
Confidence 47899999999997654 377889999999976 34455555554 578999999998877755542 1221
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC----CCccCCcceEeeccccccccCCCHHHHHHHHHhCCc
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI----PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~----~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~ 235 (493)
.|- ..++...... ...+...++||||||-.+.. ..+..++...+.
T Consensus 71 ------------------------~Ti---~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~~ 119 (196)
T PF13604_consen 71 ------------------------QTI---HSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAKK 119 (196)
T ss_dssp ------------------------EEH---HHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-T
T ss_pred ------------------------hhH---HHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHHh
Confidence 121 1111111100 01145567999999998643 566777777665
Q ss_pred -CCceeeeeec
Q 011100 236 -NRQTLLFSAT 245 (493)
Q Consensus 236 -~~~~i~~SAT 245 (493)
+.+++++--+
T Consensus 120 ~~~klilvGD~ 130 (196)
T PF13604_consen 120 SGAKLILVGDP 130 (196)
T ss_dssp -T-EEEEEE-T
T ss_pred cCCEEEEECCc
Confidence 5566655443
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.43 E-value=6.6e-06 Score=87.11 Aligned_cols=68 Identities=15% Similarity=0.013 Sum_probs=54.3
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeeccc
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMT 247 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 247 (493)
....|+++||..+..-+-.+ ...++.+..+||||||++....-...+..+++.-.+..-+.+|||.|.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 45689999999987655544 466889999999999999877666677777777667777999999985
No 181
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.43 E-value=4.3e-07 Score=93.81 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=86.6
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCC-Ce-EEEEcCCCCCCCCCCCcCeEEEecCCC
Q 011100 306 SAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ-AT-ILLATDVASRGLDIPTVDLVLNYDIPR 383 (493)
Q Consensus 306 ~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~ 383 (493)
+++||+.-..-+..+...|...++....+.|.|+...|...+..|..+. .. .+++.-+.+.|+|+-.+.+|+..|+-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 7888888888888887777777888888999999999999999999543 33 355778999999999999999999999
Q ss_pred CCCcceeeccccccCCCCccEEE
Q 011100 384 YPRDYVHRVGRTARAGRGGLAVS 406 (493)
Q Consensus 384 s~~~y~qr~GR~gR~g~~g~~~~ 406 (493)
++..-.|.+-|+.|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998665533
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.42 E-value=1.6e-06 Score=85.90 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=68.6
Q ss_pred HHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 74 TCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 74 ~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
.+...++.+++.-|..|+.+++...-.|++||+|+|||.+....+++..... +..+|+++|+..-+.|+++.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~--~~~VLvcApSNiAVDqLaeKIh~t-- 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH--AGPVLVCAPSNIAVDQLAEKIHKT-- 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc--CCceEEEcccchhHHHHHHHHHhc--
Confidence 3344678889999999999999999999999999999988766666655553 567999999999999988887765
Q ss_pred CCCceEEEEEc
Q 011100 154 GLHLRCEVVVG 164 (493)
Q Consensus 154 ~~~~~~~~~~g 164 (493)
|++++-+..
T Consensus 478 --gLKVvRl~a 486 (935)
T KOG1802|consen 478 --GLKVVRLCA 486 (935)
T ss_pred --CceEeeeeh
Confidence 566665544
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.27 E-value=3.7e-06 Score=82.97 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCCcHHHHhhhhhhhcCCc-EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 011100 81 RRPTPVQTHCIPKILEGKD-VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~-~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
..+.+-|.+|+......++ .++.||+|+|||.+....+.+.+.+ +.++||++||..-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHHhc
Confidence 3477889999999888866 7889999999999877777776666 6789999999998888887644
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.26 E-value=1.1e-05 Score=71.58 Aligned_cols=155 Identities=21% Similarity=0.293 Sum_probs=96.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhc---CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILE---GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
..|+....|.|++=-+. .++. +++.|.+....+.+ |.+.+.+.-+|.|||.+ ++|++..+..++ ..-+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg-~~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG-SRLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHH-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-CcEEEEEcC
Confidence 35777777888875442 3443 89999999998886 47899999999999987 777777766654 335667777
Q ss_pred cHHHHHHHHHHHHHhccC-CCceEEEE--EcCCCH--------HHHHHHhcCCCcEEEECcchHHHHHhcCC------C-
Q 011100 137 TRELAYQLAEQFKALGSG-LHLRCEVV--VGGMDL--------LTQAKSLMNRPHVVIATPGRIKVLLEEDP------D- 198 (493)
Q Consensus 137 t~~L~~q~~~~~~~~~~~-~~~~~~~~--~g~~~~--------~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~------~- 198 (493)
. +|..|....+...+.. ++-++..+ .-.... ............|+++||+.+..+.-... .
T Consensus 79 k-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~ 157 (229)
T PF12340_consen 79 K-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKP 157 (229)
T ss_pred H-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCH
Confidence 5 7999999888765432 23233222 111111 11111223456799999998755432110 0
Q ss_pred -C-------CCccCCcceEeecccccccc
Q 011100 199 -I-------PPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 199 -~-------~~~l~~~~~vViDEah~~~~ 219 (493)
. ...++....-|+||+|..++
T Consensus 158 ~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 158 EEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 01123334579999997765
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.25 E-value=1.5e-06 Score=78.37 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=84.3
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH-----------HHHH
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY-----------QLAE 146 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~-----------q~~~ 146 (493)
.++...+..|...+..+.++..+++.||+|+|||+.+...+++.+.... -.+++|.=|+..... -+.-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 4677788999999999988888999999999999988877776665432 445666667653211 1111
Q ss_pred HHHHhccCCCceEEEEEcCCCHHHHHHHh--cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHH
Q 011100 147 QFKALGSGLHLRCEVVVGGMDLLTQAKSL--MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224 (493)
Q Consensus 147 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~ 224 (493)
.+..+...+.. +.|.. ....+ .....|-|.. ..+++.. .++ -++||+|||+.+. ..
T Consensus 134 ~~~pi~D~L~~----~~~~~----~~~~~~~~~~~~Iei~~----l~ymRGr-----tl~-~~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 134 YFRPVYDVLVR----RLGAS----FMQYCLRPEIGKVEIAP----FAYMRGR-----TFE-NAVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHH----HhChH----HHHHHHHhccCcEEEec----HHHhcCC-----ccc-CCEEEEechhcCC----HH
Confidence 11111111100 01111 11111 1223455555 2333322 122 2689999999763 37
Q ss_pred HHHHHHHhCCcCCceeee
Q 011100 225 ELRVVFQCLPKNRQTLLF 242 (493)
Q Consensus 225 ~~~~i~~~~~~~~~~i~~ 242 (493)
.+..++.+++.+.++++.
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 788888888888776654
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.20 E-value=1.3e-05 Score=82.54 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=85.6
Q ss_pred cHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc---CCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEE
Q 011100 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE---DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCE 160 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 160 (493)
.++|+.|+..++.++-+++.|+.|+|||.+.. .++..+.. .....++++++||---+..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 37999999999999999999999999997633 23333322 1112579999999888777776665543222110
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC---CCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI---PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
. . ......+-..|..+++........+ ....-.+++||||||-++. ...+..++..++.+.
T Consensus 224 ---~--~-------~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 ---E--A-------LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred ---h--h-------hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 0 0 0001112234433333221110000 0112357899999999753 356777888888888
Q ss_pred ceeeeeec
Q 011100 238 QTLLFSAT 245 (493)
Q Consensus 238 ~~i~~SAT 245 (493)
++|++.=.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 87766544
No 187
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.20 E-value=2.2e-06 Score=73.84 Aligned_cols=106 Identities=22% Similarity=0.294 Sum_probs=71.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhcCC--ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC--CCCCCCCCCC--cCeE
Q 011100 303 GIRSAIIFVSTCRSCHLLSLLLEELDQ--EAVALHSFKSQSQRLSALHRFKSGQATILLATD--VASRGLDIPT--VDLV 376 (493)
Q Consensus 303 ~~~~~lVf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gidi~~--v~~V 376 (493)
.++.+|||++|.+..+.+...+..... ...++.. ....+..+++.|+.++-.||+++. .+++|||+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 348999999999999999999887542 2223332 355788899999999999999998 9999999996 7789
Q ss_pred EEecCCCC-CC-----------------------------cceeeccccccCCCCccEEEEEec
Q 011100 377 LNYDIPRY-PR-----------------------------DYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 377 i~~~~p~s-~~-----------------------------~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
|...+|.. +. ...|.+||+-|...+--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99888853 21 125889999997665444444444
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.18 E-value=1.9e-05 Score=83.74 Aligned_cols=131 Identities=20% Similarity=0.117 Sum_probs=79.7
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
.++ .+++.|.+|+..+..++-+++.|+.|+|||.+. -.++..+........+++++||-.-+..+.+.. |.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~ 390 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GL 390 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CC
Confidence 454 599999999999998888999999999999753 334444443321256888999987665443221 21
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCC--CCCccCCcceEeeccccccccCCCHHHHHHHHHhCCc
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPD--IPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPK 235 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~ 235 (493)
.. .|..+++........ ........++||||||+++.. ..+..++..++.
T Consensus 391 ~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~ 442 (720)
T TIGR01448 391 TA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPD 442 (720)
T ss_pred cc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCC
Confidence 11 111111110000000 000123467999999998633 456677777887
Q ss_pred CCceeeeeec
Q 011100 236 NRQTLLFSAT 245 (493)
Q Consensus 236 ~~~~i~~SAT 245 (493)
+.+++++.-+
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 8887776544
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=98.17 E-value=7.7e-06 Score=59.81 Aligned_cols=58 Identities=36% Similarity=0.544 Sum_probs=41.5
Q ss_pred hhhhhhcCCc-EEEEccCCCCchhHhHHHHHHHhh--cCCCCeEEEEEcccHHHHHHHHHHH
Q 011100 90 CIPKILEGKD-VLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 90 ~i~~i~~~~~-~lv~a~TGsGKTl~~~l~~l~~l~--~~~~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
++...+.+.. ++|.||+|||||...+-.+...+. ... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443333334 666999999999776665555553 223 668999999999999888877
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.16 E-value=2e-05 Score=82.24 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=54.3
Q ss_pred CCCcHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 011100 81 RRPTPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
..+++.|.+|+..++.. ..++|.||+|+|||.+..-.+.+.+.. +.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35689999999998876 558899999999997765555555544 55899999999999988888776
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.11 E-value=2.1e-05 Score=81.17 Aligned_cols=144 Identities=19% Similarity=0.147 Sum_probs=86.7
Q ss_pred CcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc-C-CCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEE
Q 011100 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-D-PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCE 160 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~-~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 160 (493)
..++|+.|+...+.++-.+|.|++|+|||.+..- ++..+.. . ....++++++||.--|..+.+.+......+++.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 3589999999999988999999999999976432 3333322 1 124578899999988888877766544332211
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC---CCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI---PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
. ... .....-..|-.+++........+ ....-.+++|||||+-++ -...+..+++.++++.
T Consensus 230 ---~------~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 ---D------EQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHA 293 (615)
T ss_pred ---h------hhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCC
Confidence 0 000 00011123322222211111000 011234589999999975 2366777888888888
Q ss_pred ceeeeeec
Q 011100 238 QTLLFSAT 245 (493)
Q Consensus 238 ~~i~~SAT 245 (493)
++|++.-.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88877654
No 192
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.10 E-value=1.2e-05 Score=78.49 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=65.8
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
-++|.|..|||||+.++- ++..+.....+..++++++...|...+...+...... ..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc----------------------ch
Confidence 378999999999987554 4444422233667999999999998888777654300 00
Q ss_pred CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-------CHHHHHHHHHh
Q 011100 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-------FEEELRVVFQC 232 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-------~~~~~~~i~~~ 232 (493)
....+..+..+...+... ......+++|||||||++...+ ....+..++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~---~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSES---DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccc---cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 111222333332222201 2235678999999999998731 23556666655
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.00011 Score=72.52 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=78.1
Q ss_pred EEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh-ccCCCceEEEEEcCCCHHH----HHHHhc
Q 011100 102 GLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL-GSGLHLRCEVVVGGMDLLT----QAKSLM 176 (493)
Q Consensus 102 v~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~----~~~~~~ 176 (493)
..+.||||||++....|++...++ -...|+.|............|..- ...+=..-.+.+++..... ......
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 457899999999888888887764 233677776655555444333211 0000001111122211100 001123
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCcc---CCcce-EeeccccccccCCC---------HHHHHH-HHHhC--CcCCcee
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVF---SRTKF-LVLDEADRVLDVGF---------EEELRV-VFQCL--PKNRQTL 240 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l---~~~~~-vViDEah~~~~~~~---------~~~~~~-i~~~~--~~~~~~i 240 (493)
....|+++|.+.|...+.+.......+ .+..+ .+-||||++-...- ...|+. ++-.+ .++.-++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 467899999999988776655444433 33344 56799999854210 111222 11122 2345678
Q ss_pred eeeecccc
Q 011100 241 LFSATMTS 248 (493)
Q Consensus 241 ~~SAT~~~ 248 (493)
.+|||.+.
T Consensus 160 ef~at~~k 167 (812)
T COG3421 160 EFSATIPK 167 (812)
T ss_pred hhhhcCCc
Confidence 89999984
No 194
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.78 E-value=0.00016 Score=67.59 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=53.3
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCc--EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKD--VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~--~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
.+|+...+..|.-|+..++...- +.+.|+.|||||+-++.+.+......+.-.+++|.=|+..+-
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 37899888999999999887643 778999999999998888888887766667788877876554
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.76 E-value=0.00035 Score=75.78 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=46.7
Q ss_pred cCCCCCcHHHHhhhhhhhcCCc-EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 78 LGMRRPTPVQTHCIPKILEGKD-VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~-~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
.|+ .+++-|.+|+..++.+++ +++.|+.|+|||.+ +-.+...+... +.+++.++||---+..
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAEN 405 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHH
Confidence 454 499999999999998765 78999999999976 34444444432 6679999999765543
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.70 E-value=0.00014 Score=75.80 Aligned_cols=126 Identities=22% Similarity=0.241 Sum_probs=81.2
Q ss_pred CCCCcHHHHhhhhhhhcCCc-EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCce
Q 011100 80 MRRPTPVQTHCIPKILEGKD-VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLR 158 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~-~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 158 (493)
...++..|++|+-.++..+| .+|.|=+|+|||.+....+--.+.. +.++|+.+=|..-+..+.-.+... ++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~----~i~ 739 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGF----GIY 739 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhcc----Ccc
Confidence 45689999999999888877 7889999999997755444333333 678999998887666665555544 333
Q ss_pred EEEEEcCCCH-----------------HHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc
Q 011100 159 CEVVVGGMDL-----------------LTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 159 ~~~~~g~~~~-----------------~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~ 219 (493)
+.-+-.+... ........+.+.||.+|--.+.+.+. ..+.++++|||||-.+..
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-------~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-------VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-------hccccCEEEEcccccccc
Confidence 2211111111 11222345678899998543332222 235689999999998764
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.68 E-value=0.00011 Score=70.78 Aligned_cols=68 Identities=29% Similarity=0.183 Sum_probs=54.6
Q ss_pred CcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
+++-|.+++.. ....++|.|..|||||.+.+.-++..+... ....++|++++|+..+..+..++...+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 57889999988 667899999999999999887777776655 345679999999999999999888864
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.66 E-value=0.00073 Score=72.20 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=45.3
Q ss_pred CCCcHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 81 RRPTPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
..+++-|.+|+..++.+ +-+++.|++|+|||...- .+...+... +..+++++||---+..+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~--g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA--GYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC--CCeEEEEeCcHHHHHHH
Confidence 34899999999998875 558999999999997633 344444332 66799999997655543
No 199
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.57 E-value=0.00051 Score=71.09 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCcHHHHhhhhhhhc----CCcEEEEccCCCCchhHhHHHHH---HHhhc----------C-------------------
Q 011100 82 RPTPVQTHCIPKILE----GKDVLGLAQTGSGKTAAFALPIL---HRLAE----------D------------------- 125 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKTl~~~l~~l---~~l~~----------~------------------- 125 (493)
+|++.|...+..++. ..+.++..|||+|||++.+-..+ +.+.. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 389999988877664 57799999999999987553333 22210 0
Q ss_pred --C-----CCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 126 --P-----YGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 126 --~-----~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
+ ..+++.+-.-|..-..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 13466777778877888888887754
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.53 E-value=0.0013 Score=72.03 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhhc-CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILE-GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
+++..+......++ .|++-|.+++..+.. ++-.++.|+.|+|||.+ +-.+...+... +.+++.++||-.-+..+.
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~--G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA--GYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEEcCcHHHHHHHH
Confidence 44444444333343 599999999998864 45589999999999976 33444544433 667999999976554433
Q ss_pred HHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHH
Q 011100 146 EQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~ 225 (493)
+ ..|+....+ .++....... ...+..-++|||||+.++.. ..
T Consensus 443 e-------~~Gi~a~TI------------------------as~ll~~~~~---~~~l~~~~vlVIDEAsMv~~----~~ 484 (1102)
T PRK13826 443 K-------EAGIQSRTL------------------------SSWELRWNQG---RDQLDNKTVFVLDEAGMVAS----RQ 484 (1102)
T ss_pred H-------hhCCCeeeH------------------------HHHHhhhccC---ccCCCCCcEEEEECcccCCH----HH
Confidence 2 123332221 1110000011 12345567999999997643 44
Q ss_pred HHHHHHhCC-cCCceeeeeec
Q 011100 226 LRVVFQCLP-KNRQTLLFSAT 245 (493)
Q Consensus 226 ~~~i~~~~~-~~~~~i~~SAT 245 (493)
+..++...+ .+.+++++.=+
T Consensus 485 m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 485 MALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHhcCCEEEEECCH
Confidence 445555543 45666665544
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00084 Score=65.46 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=69.0
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 174 (493)
+.+++.||||+|||.+..-.+....... ..+.++.++. +.|.-+..+ +..++..+++++...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~------------ 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAI------------ 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEee------------
Confidence 4588999999999987654333322211 1234444444 344444433 444444445544221
Q ss_pred hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-CHHHHHHHHHhCCcC-Cceeeeeecccc-hHH
Q 011100 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCLPKN-RQTLLFSATMTS-DLQ 251 (493)
Q Consensus 175 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~~~-~~~i~~SAT~~~-~~~ 251 (493)
.++..+...+.. +.++++|+||++.+..... ....+..++...... -.++.+|||... ++.
T Consensus 240 ---------~~~~~l~~~L~~-------~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 240 ---------ESFKDLKEEITQ-------SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ---------CcHHHHHHHHHH-------hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 123333333332 3567899999999875321 223445555544333 356888998764 444
Q ss_pred HHHHHh
Q 011100 252 TLLELS 257 (493)
Q Consensus 252 ~~~~~~ 257 (493)
.....+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 444443
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=97.47 E-value=0.0025 Score=61.03 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=71.9
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc---HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT---RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt---~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 175 (493)
-+++.|++|+|||.+..-.+ ..+... +.+++++... ..-..|+......+ ++.+.....+.+...
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~dp~~----- 209 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGADPAA----- 209 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCCHHH-----
Confidence 37889999999998654433 334332 4456555532 23344544444433 554432222211100
Q ss_pred cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHH
Q 011100 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 176 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 254 (493)
.+.+.+... ...++++|+||.++++.. ...-..+..+.+...+...++.++||..++.....
T Consensus 210 ------------v~~~ai~~~-----~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 210 ------------VAYDAIEHA-----KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred ------------HHHHHHHHH-----HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 011222211 013457999999998753 33456667777766677778889998876655544
Q ss_pred HHh
Q 011100 255 ELS 257 (493)
Q Consensus 255 ~~~ 257 (493)
..+
T Consensus 273 ~~f 275 (336)
T PRK14974 273 REF 275 (336)
T ss_pred HHH
Confidence 443
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.45 E-value=0.0015 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchhHhHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~ 118 (493)
++.+++.|++|+|||.+....+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 4568999999999997655433
No 204
>PRK06526 transposase; Provisional
Probab=97.38 E-value=0.00099 Score=61.39 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=25.9
Q ss_pred hhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 93 ~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
.+..+.++++.||+|+|||..+.......... +.+++++
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~---g~~v~f~ 132 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQA---GHRVLFA 132 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHC---CCchhhh
Confidence 34466889999999999997655444443333 4455553
No 205
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.38 E-value=0.00045 Score=74.08 Aligned_cols=152 Identities=19% Similarity=0.131 Sum_probs=94.0
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcC---------------CCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAED---------------PYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEV 161 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~---------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 161 (493)
|++++..-..|.|||.+-+...+..+... ...+.+|||+|. ++..||++++..-.... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 56789999999999988776555443210 112458999998 67789999999887653 66666
Q ss_pred EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC---------------CCccCCcc--eEeeccccccccCCCHH
Q 011100 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI---------------PPVFSRTK--FLVLDEADRVLDVGFEE 224 (493)
Q Consensus 162 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~---------------~~~l~~~~--~vViDEah~~~~~~~~~ 224 (493)
..|=.............+|||++|+..|..-+...... ...|-.+. .|++|||+++-.. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 65532211111122357899999999987755433110 11111112 2899999977653 24
Q ss_pred HHHHHHHhCCcCCceeeeeecccchHHHH
Q 011100 225 ELRVVFQCLPKNRQTLLFSATMTSDLQTL 253 (493)
Q Consensus 225 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 253 (493)
........++ ....-++|+||-..+..+
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 4444444443 344788999976544443
No 206
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.35 E-value=0.0092 Score=70.27 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=78.9
Q ss_pred CCcHHHHhhhhhhhcCC--cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 82 RPTPVQTHCIPKILEGK--DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
.+++-|.+++..++... -.++.|+.|+|||.+ +-.++..+... +..+++++||-.-+..+.+... +..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g-------~~A 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ--GYEIQIITAGSLSAQELRQKIP-------RLA 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHhc-------chh
Confidence 48899999999988864 489999999999976 33444444332 6789999999876655544321 111
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC-CcCCc
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PKNRQ 238 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~-~~~~~ 238 (493)
.. .......+.. ..-..|...+ +.. ...+..-++||||||-++.. ..+..++... +.+.+
T Consensus 499 ~T------i~~~l~~l~~--~~~~~tv~~f---l~~----~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 499 ST------FITWVKNLFN--DDQDHTVQGL---LDK----SSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSK 559 (1960)
T ss_pred hh------HHHHHHhhcc--cccchhHHHh---hcc----cCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCE
Confidence 00 0000110000 0111222222 211 12345668999999997643 4555566544 45788
Q ss_pred eeeeeec
Q 011100 239 TLLFSAT 245 (493)
Q Consensus 239 ~i~~SAT 245 (493)
++++.=+
T Consensus 560 vVlvGD~ 566 (1960)
T TIGR02760 560 LILLNDS 566 (1960)
T ss_pred EEEEcCh
Confidence 8877665
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.34 E-value=0.00032 Score=61.89 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=25.3
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.-.++.||+|+|||..++-.+...... +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 347889999999997755544444333 567888866
No 208
>PRK08181 transposase; Validated
Probab=97.30 E-value=0.0022 Score=59.46 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=33.8
Q ss_pred cHHHHhhhh----hhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 84 TPVQTHCIP----KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 84 ~~~Q~~~i~----~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
...|..++. .+..++++++.||+|+|||..+.......+.. +..++++ +..+|..++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeee-eHHHHHHHHH
Confidence 344544442 33467889999999999996544333333332 4445444 4455655543
No 209
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.29 E-value=0.0034 Score=61.32 Aligned_cols=74 Identities=18% Similarity=0.094 Sum_probs=49.6
Q ss_pred cCCCCCcHHHHhhhhhh----hcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-CCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 78 LGMRRPTPVQTHCIPKI----LEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-YGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
+.+...+|-|.+-...+ -.+.+.++.+|+|+|||.+.+..++......+ ...+.++..-|..-......+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 56777788887665443 34567999999999999886665555444443 3456777777766555555555554
No 210
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0037 Score=60.52 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=80.5
Q ss_pred ccccCCCCHHHHHHHHH-cC----CCC---CcHHHHhhhhh-----------hhcCCcEEEEccCCCCchhHhHHHHHHH
Q 011100 61 TFAGLGLAEWAVQTCKE-LG----MRR---PTPVQTHCIPK-----------ILEGKDVLGLAQTGSGKTAAFALPILHR 121 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~-~g----~~~---~~~~Q~~~i~~-----------i~~~~~~lv~a~TGsGKTl~~~l~~l~~ 121 (493)
.+...|+++.+.+.|-. .. ... ...+....+.. +..+..+++.||||+|||+.....+...
T Consensus 82 ~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 82 YLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667888877776643 11 111 12333333322 1124578999999999998766544443
Q ss_pred hhcCCCCeEEEEEc-cc-HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC
Q 011100 122 LAEDPYGVLALVIT-PT-RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI 199 (493)
Q Consensus 122 l~~~~~~~~~lil~-Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 199 (493)
....+ ..++.++. .+ +.-+. +.+..++..+++.+.. +.+++.+...+..
T Consensus 162 ~~~~G-~~~V~lit~D~~R~ga~---EqL~~~a~~~gv~~~~---------------------~~~~~~l~~~l~~---- 212 (374)
T PRK14722 162 VMRFG-ASKVALLTTDSYRIGGH---EQLRIFGKILGVPVHA---------------------VKDGGDLQLALAE---- 212 (374)
T ss_pred HHhcC-CCeEEEEecccccccHH---HHHHHHHHHcCCceEe---------------------cCCcccHHHHHHH----
Confidence 33322 12344333 22 22222 2333333323443322 3344444433332
Q ss_pred CCccCCcceEeeccccccccCC-CHHHHHHHHHhCCcCCceeeeeecccch-HHHHHHHh
Q 011100 200 PPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCLPKNRQTLLFSATMTSD-LQTLLELS 257 (493)
Q Consensus 200 ~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~~~ 257 (493)
+.+.++|+||.+-+..... ....+..+.........++.+|||...+ +....+.+
T Consensus 213 ---l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 ---LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred ---hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 3456889999998643221 2222332222222334578889997653 34444433
No 211
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.21 E-value=0.0001 Score=75.67 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=62.2
Q ss_pred HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhc---CCCeEEEEcCCCCCC
Q 011100 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS---GQATILLATDVASRG 367 (493)
Q Consensus 291 ~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~~G 367 (493)
.|...+..+...+ .+++||...+...+.+..++...+ ....+.|......|..++++|+. ...-.|.+|.+.+.|
T Consensus 619 ~l~~~~~~l~~~g-hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 619 LLLKMLKKLKSSG-HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3444555555555 889999999999999999998888 88899999999999999999994 356789999988765
No 212
>PRK06921 hypothetical protein; Provisional
Probab=97.13 E-value=0.0067 Score=56.45 Aligned_cols=45 Identities=29% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
+..+++.|++|+|||..+. .+...+.... +..++++. ..++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~-g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK-GVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc-CceEEEEE-HHHHHHHH
Confidence 5679999999999996533 3444444321 34455544 44554443
No 213
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.11 E-value=0.0024 Score=53.04 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=38.7
Q ss_pred eccCCCCHHHHHHHHHHhhcCC-CeEEEEcCCCCCCCCCCC--cCeEEEecCCC
Q 011100 333 ALHSFKSQSQRLSALHRFKSGQ-ATILLATDVASRGLDIPT--VDLVLNYDIPR 383 (493)
Q Consensus 333 ~~~~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gidi~~--v~~Vi~~~~p~ 383 (493)
++.-+....+...+++.|++.. ..||+++.-+++|+|+|+ ++.||...+|.
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3344455556788889998654 379999988999999997 56788888774
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.11 E-value=0.004 Score=51.97 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 011100 97 GKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~ 114 (493)
++.+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999643
No 215
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.09 E-value=0.0015 Score=59.79 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=33.3
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccc
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTS 248 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 248 (493)
...++.+|+||||.|... -...+++.+...+...++++.+.-+..
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhh
Confidence 456789999999988654 335666677777777888888777654
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0074 Score=58.29 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=67.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccH-HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTR-ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~-~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 174 (493)
+.+++.||||+|||......+... ... +.++.++. |.| ..+.|+. .++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~~--GkkVglI~aDt~RiaAvEQLk----~yae~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HGK--KKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HHc--CCcEEEEecCCcchHHHHHHH----HHhhhcCCcE---------------
Confidence 458899999999998766554433 322 44444444 334 2333433 2222223332
Q ss_pred hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-CHHHHHHHHHhCCcCCceeeeeeccc-chHHH
Q 011100 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCLPKNRQTLLFSATMT-SDLQT 252 (493)
Q Consensus 175 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 252 (493)
+++.+|..+...+..... -.++++|+||-+-+..... .-..+..++....+..-++.+|||.. +++..
T Consensus 300 ------~v~~d~~~L~~aL~~lk~----~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE----EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh----ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 123355555555543211 1246899999998754322 22334444444334444566888755 45566
Q ss_pred HHHHhc
Q 011100 253 LLELSA 258 (493)
Q Consensus 253 ~~~~~~ 258 (493)
+...+.
T Consensus 370 i~~~F~ 375 (436)
T PRK11889 370 IITNFK 375 (436)
T ss_pred HHHHhc
Confidence 655543
No 217
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.02 E-value=0.0015 Score=63.88 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=43.1
Q ss_pred CCcHHHHhhhhhh------hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 82 RPTPVQTHCIPKI------LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 82 ~~~~~Q~~~i~~i------~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
+|++-|++++..+ .++..+++.|+-|+|||..+-. +...+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhcc--ccceEEEecchHHHHHhc
Confidence 3678899998888 5678899999999999975332 2333332 256799999997655443
No 218
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.01 E-value=0.0011 Score=61.05 Aligned_cols=78 Identities=14% Similarity=0.336 Sum_probs=59.5
Q ss_pred HHHHHhhcCCCeEEEEcCCCCCCCCCCC--------cCeEEEecCCCCCCcceeeccccccCCCC-ccEEEEEec---cc
Q 011100 345 SALHRFKSGQATILLATDVASRGLDIPT--------VDLVLNYDIPRYPRDYVHRVGRTARAGRG-GLAVSFVTQ---ND 412 (493)
Q Consensus 345 ~~~~~f~~g~~~vlv~T~~~~~Gidi~~--------v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~-g~~~~~~~~---~~ 412 (493)
...+.|.+|+..|+|.+++++.||.+.. -++-|...+||+....+|..||++|.|+. .-.|.++.. .+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998863 23567789999999999999999999984 444554443 24
Q ss_pred HHHHHHHHHH
Q 011100 413 VDLIHEIEAV 422 (493)
Q Consensus 413 ~~~~~~~~~~ 422 (493)
..+...+.+.
T Consensus 132 ~Rfas~va~r 141 (278)
T PF13871_consen 132 RRFASTVARR 141 (278)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.98 E-value=0.014 Score=51.47 Aligned_cols=123 Identities=22% Similarity=0.199 Sum_probs=64.2
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
+++.||||+|||.+..=.+.....+ +.++.+++ ..|.=+.++.+.+.+. +++++.......+....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~---l~vp~~~~~~~~~~~~~------ 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEI---LGVPFYVARTESDPAEI------ 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHH---HTEEEEESSTTSCHHHH------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHH---hccccchhhcchhhHHH------
Confidence 6889999999998755444333333 33444444 3444444433333333 35655432222221111
Q ss_pred CCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc-CCCHHHHHHHHHhCCcCCceeeeeecccchH
Q 011100 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDL 250 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 250 (493)
+...+... .-+++++|+||-+.+... ......+..++..+.+..-.+.+|||...+.
T Consensus 72 -----------~~~~l~~~-----~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 72 -----------AREALEKF-----RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp -----------HHHHHHHH-----HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred -----------HHHHHHHH-----hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 11122211 013467899999886432 2234566666766666666788999987643
No 220
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.95 E-value=0.0026 Score=52.93 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCC---eEEEEcCC--CCCCCCCCC--cCeEEEecCCCC-C---------------------------
Q 011100 341 SQRLSALHRFKSGQA---TILLATDV--ASRGLDIPT--VDLVLNYDIPRY-P--------------------------- 385 (493)
Q Consensus 341 ~~r~~~~~~f~~g~~---~vlv~T~~--~~~Gidi~~--v~~Vi~~~~p~s-~--------------------------- 385 (493)
.+...+++.|++..- .||+++.- +++|||+|+ ++.||..++|.. +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 344678888886443 68888876 999999997 578888887742 1
Q ss_pred ---CcceeeccccccCCCCccEEEEEe
Q 011100 386 ---RDYVHRVGRTARAGRGGLAVSFVT 409 (493)
Q Consensus 386 ---~~y~qr~GR~gR~g~~g~~~~~~~ 409 (493)
....|.+||+-|...+--++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 112588899999765544454444
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.94 E-value=0.0013 Score=54.54 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
+..+++.||+|+|||..... ++..+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~--~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP--GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC--CCCEEEECCEEcc
Confidence 45689999999999976443 33333321 1246777766543
No 222
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.91 E-value=0.0038 Score=63.62 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=52.7
Q ss_pred HHHHhhhhhhhc-----C----CcEEEEccCCCCchhHhHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 85 PVQTHCIPKILE-----G----KDVLGLAQTGSGKTAAFALPILHRLA-EDPYGVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 85 ~~Q~~~i~~i~~-----~----~~~lv~a~TGsGKTl~~~l~~l~~l~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
|||+-.+..++. | +.+++.-|=|.|||......++..+. ....+..++++++++.-|..+++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 677777776652 2 45888899999999766655555543 3344678999999999999999999887654
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.014 Score=53.37 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=25.2
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
..+++.|++|+|||..+.. +...+... +..++++ +..+|..
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~--g~~v~~i-t~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR--GKSVLII-TVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc--CCeEEEE-EHHHHHH
Confidence 4689999999999976443 44444442 4455555 4334443
No 224
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.85 E-value=0.0027 Score=57.69 Aligned_cols=86 Identities=26% Similarity=0.300 Sum_probs=62.8
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCC-CHHHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccC
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM-DLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFS 204 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~ 204 (493)
..+.+|||+..-.=|..+.+.+..+-. -+..++-+++.. ...++...+. ...+|.||||+|+..+++.+ ...++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~l~ 200 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALSLS 200 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCCcc
Confidence 357799999987777777877777631 123444455544 4555555554 47899999999999999877 55689
Q ss_pred CcceEeeccccc
Q 011100 205 RTKFLVLDEADR 216 (493)
Q Consensus 205 ~~~~vViDEah~ 216 (493)
++.+||||--|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998773
No 225
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.013 Score=55.60 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=36.3
Q ss_pred CCCccccccCCCCHHHHHHHHHc--------------CCCCCcH-HHHhhh-----hhhhcC-----CcEEEEccCCCCc
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKEL--------------GMRRPTP-VQTHCI-----PKILEG-----KDVLGLAQTGSGK 110 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~--------------g~~~~~~-~Q~~~i-----~~i~~~-----~~~lv~a~TGsGK 110 (493)
......|+.++....+.+.|+.- |....-. .++.++ |.+.+| +.++..||+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 34566789999998998888641 1111111 122221 233444 5699999999999
Q ss_pred hhHh
Q 011100 111 TAAF 114 (493)
Q Consensus 111 Tl~~ 114 (493)
|+.+
T Consensus 259 TlLA 262 (491)
T KOG0738|consen 259 TLLA 262 (491)
T ss_pred HHHH
Confidence 9743
No 226
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.84 E-value=0.013 Score=49.91 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=24.4
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
+++.|++|+|||......+...... +..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcch
Confidence 6789999999997655444433332 5557776654433
No 227
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.82 E-value=0.0007 Score=58.05 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=53.5
Q ss_pred EEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCc
Q 011100 101 LGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPH 180 (493)
Q Consensus 101 lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 180 (493)
++.|+-|-|||.+.-+.+...+... ..+++|.+|+.+-++.+++.+..-...++++........ ...........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccccccce
Confidence 5789999999987655444433332 257999999998888777766555444444330000000 00001112456
Q ss_pred EEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeeccc
Q 011100 181 VVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMT 247 (493)
Q Consensus 181 Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 247 (493)
|-+..|+.+... -...+++|||||=.+ -...+..++... ..++||.|..
T Consensus 76 i~f~~Pd~l~~~----------~~~~DlliVDEAAaI----p~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAE----------KPQADLLIVDEAAAI----PLPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred EEEECCHHHHhC----------cCCCCEEEEechhcC----CHHHHHHHHhhC----CEEEEEeecc
Confidence 666666554211 123478999999975 335566665433 2567777764
No 228
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.0054 Score=58.84 Aligned_cols=36 Identities=19% Similarity=0.048 Sum_probs=28.2
Q ss_pred CcHHHHhhhhhhhcCC----cEEEEccCCCCchhHhHHHH
Q 011100 83 PTPVQTHCIPKILEGK----DVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~~----~~lv~a~TGsGKTl~~~l~~ 118 (493)
++|||...+..+.... ..++.||.|.|||..+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 5899999998877642 48899999999997655433
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.79 E-value=0.0051 Score=59.21 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=70.4
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc-HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT-RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 175 (493)
++.+.+.||||.|||++..=.+............+||.+-| |.=|. +.++.++.-+++++..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~---EQLk~Ya~im~vp~~vv~------------ 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV---EQLKTYADIMGVPLEVVY------------ 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH---HHHHHHHHHhCCceEEec------------
Confidence 56789999999999987554443333233334445666654 43333 344444444455554444
Q ss_pred cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc-cCCCHHHHHHHHHhCCcCCceeeeeecccc-hHHHH
Q 011100 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL-DVGFEEELRVVFQCLPKNRQTLLFSATMTS-DLQTL 253 (493)
Q Consensus 176 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~ 253 (493)
+|.-|...+.. +.++++|.||=+-+-. |......+..++......--.+.+|||... ++..+
T Consensus 268 ---------~~~el~~ai~~-------l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 268 ---------SPKELAEAIEA-------LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred ---------CHHHHHHHHHH-------hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 44444433332 3455677777766522 222334555555554444456778888653 55555
Q ss_pred HHHh
Q 011100 254 LELS 257 (493)
Q Consensus 254 ~~~~ 257 (493)
...+
T Consensus 332 ~~~f 335 (407)
T COG1419 332 IKQF 335 (407)
T ss_pred HHHh
Confidence 5544
No 230
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.79 E-value=0.0028 Score=67.22 Aligned_cols=70 Identities=24% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-DPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
.|++-|.+|+... ...++|.|..|||||.+...-+...+.. .-...++|+++-|+..|.++.+++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 3789999998753 3568899999999999988777777754 22345799999999999999999987653
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=96.76 E-value=0.01 Score=60.75 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=55.0
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
.|.|+|...+..+..++-.++..+=..|||.+....++......+ +..+++++|+..-|..+++.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 488999999988766666788888999999887755544433322 55899999999999998888876654
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.76 E-value=0.01 Score=52.11 Aligned_cols=48 Identities=29% Similarity=0.252 Sum_probs=34.1
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
+++.||+|+|||...+-.+...+.. +..++++... +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998766655655544 5568887653 4566676666665
No 233
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.02 Score=56.97 Aligned_cols=128 Identities=25% Similarity=0.246 Sum_probs=65.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHh-hcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRL-AEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l-~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 173 (493)
++.+++.||||+|||.+..-.+.... ... +.++.++. |.+.-+. +.+..++..+++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------------ 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------------ 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------------
Confidence 45688999999999977554443332 222 33444443 3343222 2233332222333321
Q ss_pred HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC-CCHHHHHHHHHhC-CcCCceeeeeecccc-hH
Q 011100 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCL-PKNRQTLLFSATMTS-DL 250 (493)
Q Consensus 174 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~~-~~ 250 (493)
+.+++.+...+.. +.++++|+||.+-+.... .....+..++... .+....+.+|||... ++
T Consensus 284 ---------~~~~~~l~~~l~~-------~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 284 ---------VYDPKELAKALEQ-------LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL 347 (424)
T ss_pred ---------cCCHHhHHHHHHH-------hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH
Confidence 2334444444433 235689999999764321 1223455555521 233447788998764 55
Q ss_pred HHHHHHh
Q 011100 251 QTLLELS 257 (493)
Q Consensus 251 ~~~~~~~ 257 (493)
..+...+
T Consensus 348 ~~~~~~f 354 (424)
T PRK05703 348 KDIYKHF 354 (424)
T ss_pred HHHHHHh
Confidence 5555444
No 234
>PRK12377 putative replication protein; Provisional
Probab=96.73 E-value=0.013 Score=53.66 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=28.0
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 146 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 146 (493)
.++++.|++|+|||..+. .+...+... +..+ +.++..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~~--g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLAK--GRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCe-EEEEHHHHHHHHHH
Confidence 569999999999996533 344444442 3334 44455566665544
No 235
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.72 E-value=0.0066 Score=64.10 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=57.9
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
..+++-|.+|+-.- ..+++|.|..|||||.+...-+...+... ..+.++|+++.|+..|..+.+++.......++.+
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~v 272 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDITA 272 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcEE
Confidence 56999999998543 34589999999999998776666555443 2345799999999999999998877654323333
Q ss_pred E
Q 011100 160 E 160 (493)
Q Consensus 160 ~ 160 (493)
.
T Consensus 273 ~ 273 (684)
T PRK11054 273 R 273 (684)
T ss_pred E
Confidence 3
No 236
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.67 E-value=0.028 Score=57.86 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=58.1
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
.+++.|++|+|||.... .+.+.+.....+.+++++. ..+++++....+..-
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~~--------------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRDG--------------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHhc---------------------------
Confidence 38999999999996433 3344443322245566554 445555543322210
Q ss_pred CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-CHHHHHHHHHhCCc-CCceeeeeecccchHH
Q 011100 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCLPK-NRQTLLFSATMTSDLQ 251 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~ 251 (493)
..+ .+.. .+.++++||||++|.+.... ....+-.++..+.. +.++|+.|-..+.++.
T Consensus 367 ------~~~----~f~~------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 367 ------KGD----SFRR------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred ------cHH----HHHH------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 000 1111 13456899999999876533 22334444444433 4667765555555544
No 237
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0074 Score=62.03 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=30.4
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHh
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELS 257 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 257 (493)
...++++||||+|+|....+ ..+.+.+..-+.+..+|+.|--+..-...+...+
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 35678999999999865433 3333444444455556665544433333344333
No 238
>PRK08727 hypothetical protein; Validated
Probab=96.65 E-value=0.009 Score=54.56 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
..+++.|++|+|||..... +...+... +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQA--GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc--CCcEEEEe
Confidence 3499999999999965443 23333332 44566654
No 239
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.65 E-value=0.014 Score=67.18 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCcHHHHhhhhhhhcCC--cEEEEccCCCCchhHhHHHHHHHhhc--CCCCeEEEEEcccHHHHHHH
Q 011100 82 RPTPVQTHCIPKILEGK--DVLGLAQTGSGKTAAFALPILHRLAE--DPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKTl~~~l~~l~~l~~--~~~~~~~lil~Pt~~L~~q~ 144 (493)
.+++.|.+|+..++.+. -++|.|..|+|||.+. -.++..+.. ...+..++.++||---+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 58999999999999864 5899999999999763 233333321 12255688899998766543
No 240
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.018 Score=54.88 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=28.5
Q ss_pred CCCcHHHHhhhhhhhc----CC---cEEEEccCCCCchhHhHHH
Q 011100 81 RRPTPVQTHCIPKILE----GK---DVLGLAQTGSGKTAAFALP 117 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~----~~---~~lv~a~TGsGKTl~~~l~ 117 (493)
..++|||..++..+.. ++ -+++.||.|.||+..+...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~l 46 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALAL 46 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 4589999999987653 33 4899999999999765543
No 241
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.60 E-value=0.0076 Score=64.76 Aligned_cols=71 Identities=23% Similarity=0.190 Sum_probs=57.5
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
..|++-|.+++... ...++|.|..|||||.+...-+...+... -...++|+|+-|+..|..+.+++..+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45899999999653 35699999999999999777777766542 2355799999999999999999988764
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.59 E-value=0.0077 Score=60.92 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=27.9
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
+.+++.||+|+|||.... .+...+.....+.+++++ +...+..+..
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi-~~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYV-TSEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEE-EHHHHHHHHH
Confidence 458999999999997543 344444443334456665 4445554443
No 243
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.0075 Score=55.63 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=34.1
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
.+.++++.|++|+|||..+.. +.+.+... + .-++.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~--g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKA--G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHc--C-CeEEEEEHHHHHHHHHHHHh
Confidence 567899999999999976544 34444442 3 34556677788877666443
No 244
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.56 E-value=0.0053 Score=55.40 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=58.9
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
-+++.||+|+|||-- +..+.+.+.....+.+++++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 389999999999973 44454555443335567766543 444433332222
Q ss_pred CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-CHHHHHHHHHhCC-cCCceeeeeecccchH
Q 011100 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCLP-KNRQTLLFSATMTSDL 250 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 250 (493)
.....+... +...++++||.+|.+.+.. +...+-.++..+. .+.++++.|...|..+
T Consensus 86 -----~~~~~~~~~----------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -----GEIEEFKDR----------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -----TSHHHHHHH----------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -----ccchhhhhh----------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011111111 3466899999999876532 2334444444432 4567777776777654
No 245
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.0068 Score=60.39 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.6
Q ss_pred EEEEccCCCCchhHhHHHH
Q 011100 100 VLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~ 118 (493)
+|+.||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999998765543
No 246
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.54 E-value=0.022 Score=59.48 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=85.2
Q ss_pred CCCCcHHHHhhhhhhhcCC--cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 80 MRRPTPVQTHCIPKILEGK--DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
.+....-|.+.+..+++.+ -+++.|.=|=|||.+.-+.++....... ..+++|.+|+.+-++.+++.+.+-+..+|.
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 3333333444555555543 4888999999999887776633322221 457999999999888888777666555554
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
+-.+........ .....+...|-+.+|.... ..-++||||||-.+ ..+.+..++...
T Consensus 291 ~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~-------------~~~DllvVDEAAaI----plplL~~l~~~~---- 347 (758)
T COG1444 291 KRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ-------------EEADLLVVDEAAAI----PLPLLHKLLRRF---- 347 (758)
T ss_pred ccccccccccce--eeecCCceeEEeeCcchhc-------------ccCCEEEEehhhcC----ChHHHHHHHhhc----
Confidence 432222211100 0000122335566665432 11468999999865 446666666554
Q ss_pred ceeeeeeccc
Q 011100 238 QTLLFSATMT 247 (493)
Q Consensus 238 ~~i~~SAT~~ 247 (493)
+.++||.|+.
T Consensus 348 ~rv~~sTTIh 357 (758)
T COG1444 348 PRVLFSTTIH 357 (758)
T ss_pred CceEEEeeec
Confidence 3688899975
No 247
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.53 E-value=0.015 Score=66.05 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=44.8
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhH--HHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 82 RPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFA--LPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~--l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
.+++-|.+|+..++.. +-++|.|..|+|||.+.- +-++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHH
Confidence 6999999999999976 559999999999997632 222222222 2256788899997766554
No 248
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.53 E-value=0.012 Score=58.69 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=78.8
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH-HHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE-LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
-.++.|..|||||.+..+.++..+.....+.+++++-|+.. |..-++..+......+|+....-...... .. .+..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecC
Confidence 36789999999999988888877777523577898988876 66677777776655555432221111100 00 0111
Q ss_pred -CCcEEEECc-chHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC--cCCceeeeeecccc
Q 011100 178 -RPHVVIATP-GRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP--KNRQTLLFSATMTS 248 (493)
Q Consensus 178 -~~~Iiv~Tp-~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~ 248 (493)
+..|++..- +.... +. ....+.++.+|||..+... .+..++..+. .....+++|.||..
T Consensus 80 ~g~~i~f~g~~d~~~~-ik-------~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNK-LK-------SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CCeEEEeecccCChhH-hh-------CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 334555443 22111 11 1233689999999987433 4444444443 22224788988865
No 249
>PRK05642 DNA replication initiation factor; Validated
Probab=96.51 E-value=0.012 Score=53.68 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=26.8
Q ss_pred CCcceEeeccccccccC-CCHHHHHHHHHhCCcCCceeeeeeccc
Q 011100 204 SRTKFLVLDEADRVLDV-GFEEELRVVFQCLPKNRQTLLFSATMT 247 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~ 247 (493)
.+++++|||++|.+... .+...+-.++..+......+++|++.+
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 34578999999976543 234556666655544334456666644
No 250
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.01 Score=61.92 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=24.7
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
..++++||||+|+|....+ ..+.+++..-+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4578999999998865443 33444555545555555544
No 251
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.46 E-value=0.02 Score=55.12 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=25.8
Q ss_pred CcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
..++|||||+|.+........+..++...+.+.++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998743334455666676666666666544
No 252
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.024 Score=54.34 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
+.++++.|+||+|||..+. .+...+... +..++++ +...|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~~--g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLDR--GKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHHC--CCeEEEE-EHHHHHHHHH
Confidence 4779999999999997543 344444443 4455554 4455655443
No 253
>PRK06893 DNA replication initiation factor; Validated
Probab=96.45 E-value=0.011 Score=53.89 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCcceEeeccccccccC-CCHHHHHHHHHhCCc-CCceeeeeecccc
Q 011100 204 SRTKFLVLDEADRVLDV-GFEEELRVVFQCLPK-NRQTLLFSATMTS 248 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 248 (493)
.+.+++|+||+|.+... .+...+..++..... +.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 45679999999987532 233344444544433 3456677777543
No 254
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.45 E-value=0.015 Score=58.39 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=30.8
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
+.+++.|++|+|||... ..+.+.+.....+.+++++.+ ..+..++...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 44899999999999543 444555544333556766555 45665555444
No 255
>PRK08116 hypothetical protein; Validated
Probab=96.45 E-value=0.014 Score=54.32 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=27.1
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
.+++.|++|+|||..+. .+.+.+... +..++++ +..+|...+.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEEE-EHHHHHHHHH
Confidence 49999999999997644 455555543 3344444 4455555443
No 256
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.45 E-value=0.0097 Score=59.38 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=27.1
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
..+++.|++|+|||... ..+.+.+.....+..++++.. ..+..+
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS-EKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH-HHHHHH
Confidence 34899999999999754 344555544333455666643 344433
No 257
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.014 Score=55.69 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.+.|+.||+|+|||..+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4699999999999976554
No 258
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.41 E-value=0.022 Score=53.05 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.++++.||+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999976544
No 259
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=96.40 E-value=0.0069 Score=58.88 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=33.7
Q ss_pred ccCCcce-EeeccccccccCC---CHHHHHHHHHhCC-cCCceeeeeecccchHHHHH
Q 011100 202 VFSRTKF-LVLDEADRVLDVG---FEEELRVVFQCLP-KNRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 202 ~l~~~~~-vViDEah~~~~~~---~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~ 254 (493)
+++..++ +.|||||.+.+.. +...++.+.+.++ +..-++++|-++.+--+.++
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL 308 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPDDVL 308 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCCCCHHHH
Confidence 3455566 5699999988764 3455555555554 56678888888764333333
No 260
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.40 E-value=0.008 Score=64.20 Aligned_cols=69 Identities=22% Similarity=0.144 Sum_probs=55.4
Q ss_pred CcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
|++-|.+++... ..+++|.|..|||||.+.+.-+...+... .....+|+|+.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 788999988653 45799999999999998877777777542 2346799999999999999999887653
No 261
>CHL00181 cbbX CbbX; Provisional
Probab=96.39 E-value=0.032 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCCchhHhHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALP 117 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~ 117 (493)
+.++++.||+|+|||..+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 445899999999999876544
No 262
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.38 E-value=0.036 Score=47.38 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=34.0
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHH
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 254 (493)
....+++||||||.|... ....+...+..-+.+..++++|..+..-+..+.
T Consensus 100 ~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 100 EGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp TSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred cCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 357899999999987554 446667777776777777777766655444443
No 263
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.37 E-value=0.014 Score=53.33 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+..+++.||+|+|||..... +.+.+... +.+++++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~~--~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQR--GRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHhC--CCeEEEEE
Confidence 35699999999999965443 23333322 44555553
No 264
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.36 E-value=0.016 Score=52.69 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+..+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999976544
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=96.35 E-value=0.025 Score=52.41 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=28.8
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
+..+.++++.||+|+|||..+.......... +..++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEe-HHHHHHH
Confidence 4567889999999999997655443332322 55566553 3445443
No 266
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.34 E-value=0.0078 Score=64.65 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=56.9
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-DPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
..|++-|.+|+... ...++|.|..|||||.+...-+...+.. +-...++|+|+-|+..|.++.+++.++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999998753 3569999999999999877777766653 22345799999999999999999988754
No 267
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.017 Score=62.14 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=26.8
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
..++++||||+|+|.... ...+.+++...+.+..+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999986543 345556666666666666554
No 268
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.33 E-value=0.023 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=18.5
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHR 121 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~ 121 (493)
|.-+.+.||||+|||++....+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3458889999999998866554433
No 269
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.33 E-value=0.01 Score=56.40 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHcCCCCCcHHHHhhhhhhh-cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 74 TCKELGMRRPTPVQTHCIPKIL-EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 74 ~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
.+...|. +++.|.+.+..+. .+.+++++|+||||||.. +-.++..+...+...+++.+-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCcccc
Confidence 3444454 5678887776544 467899999999999965 344555554333456788887777763
No 270
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.33 E-value=0.017 Score=57.92 Aligned_cols=89 Identities=19% Similarity=0.104 Sum_probs=59.7
Q ss_pred CCCC-HHHHHHHHHcCCCCCcH----HHHhhhhhhhc--CCcEEEEccCCCCchhHhHHHHHHHhhcCC---CCeEEEEE
Q 011100 65 LGLA-EWAVQTCKELGMRRPTP----VQTHCIPKILE--GKDVLGLAQTGSGKTAAFALPILHRLAEDP---YGVLALVI 134 (493)
Q Consensus 65 ~~l~-~~l~~~l~~~g~~~~~~----~Q~~~i~~i~~--~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~---~~~~~lil 134 (493)
.+.. +-+...|++.--.+++. +|.+-=..|.. ++-++|+|..|||||.+++--+...+.... .+..+||+
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEE
Confidence 3344 44556777654444443 35444444444 345899999999999998876666554432 24459999
Q ss_pred cccHHHHHHHHHHHHHhcc
Q 011100 135 TPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~~ 153 (493)
.|.+.+..=+.+.+-+++.
T Consensus 267 ~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 267 GPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCcHHHHHHHHHhchhhcc
Confidence 9999998888888877754
No 271
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.055 Score=50.24 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=67.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccH-HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTR-ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~-~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 174 (493)
..+++.|++|+|||..+...+...... +.++.++. +.+ ..+.|+...... .++++...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~~------------ 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIAV------------ 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEEec------------
Confidence 568999999999998766544433222 33444443 222 455555433332 23333211
Q ss_pred hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC-CCHHHHHHHHHhCCcCCceeeeeeccc-chHHH
Q 011100 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCLPKNRQTLLFSATMT-SDLQT 252 (493)
Q Consensus 175 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 252 (493)
.++..+...+.... ...++++|+||-+-+.... ..-..+..++....+..-++.+|||.. .+...
T Consensus 137 ---------~~~~~l~~~l~~l~----~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 137 ---------RDEAAMTRALTYFK----EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ---------CCHHHHHHHHHHHH----hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 23334443333211 1235689999999875422 222334444444444444667899864 46666
Q ss_pred HHHHh
Q 011100 253 LLELS 257 (493)
Q Consensus 253 ~~~~~ 257 (493)
....+
T Consensus 204 ~~~~f 208 (270)
T PRK06731 204 IITNF 208 (270)
T ss_pred HHHHh
Confidence 66654
No 272
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.29 E-value=0.017 Score=54.27 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 011100 70 WAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 70 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
++.++|..-|+.+-.+.--+.+--+..|.-+++.|++|+|||......+.+..... +..++++.-- .-..++...+.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcc-cCHHHHHHHHH
Confidence 34445543333333222233333455667799999999999976555555443332 4567777632 22344444444
Q ss_pred Hh
Q 011100 150 AL 151 (493)
Q Consensus 150 ~~ 151 (493)
..
T Consensus 80 ~~ 81 (271)
T cd01122 80 GQ 81 (271)
T ss_pred HH
Confidence 43
No 273
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.031 Score=56.38 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=24.3
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||+|.+....+ ..+...+..-++...+++.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 46788999999998765433 33444444444444444443
No 274
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.016 Score=59.80 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
...+++||||+|+|....+ ..+..++...+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 4568999999998765433 44555555555555555443
No 275
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.031 Score=57.02 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=26.3
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
..++++||||+|+|....+ ..+...+...|.+..+++.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998865443 34445666656666666655
No 276
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.17 E-value=0.016 Score=54.84 Aligned_cols=67 Identities=30% Similarity=0.397 Sum_probs=44.4
Q ss_pred HHHHHHcCCCCCcHHHHhhhhhhh-cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 72 VQTCKELGMRRPTPVQTHCIPKIL-EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 72 ~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
++.|...|. +++-|.+.+..+. .+++++++|+||||||.. +-.++..+.......+++++-.+.+|.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhhc
Confidence 444444454 5566666666544 457899999999999965 444555555433356788888888873
No 277
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.13 E-value=0.037 Score=55.41 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=85.5
Q ss_pred CCcHHHHhhhhhhhc------C----CcEEEEccCCCCchhHhH-HHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 011100 82 RPTPVQTHCIPKILE------G----KDVLGLAQTGSGKTAAFA-LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~------~----~~~lv~a~TGsGKTl~~~-l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
.+-|||.-++..++. + +..++..|-+-|||..+. +.+...+.....+..+.|++|+.+-+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 478999999988872 1 358999999999996544 44444444555577899999999999888888877
Q ss_pred hccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchH---HHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHH
Q 011100 151 LGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI---KVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR 227 (493)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l---~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~ 227 (493)
...... +... ......+-...+.... ...+..... ...=.+..+.|+||.|...+.+ ..+.
T Consensus 141 mv~~~~----------~l~~---~~~~q~~s~~i~~~~~~s~ik~~aa~~~-~~Dg~~~~~~I~DEih~f~~~~--~~~~ 204 (546)
T COG4626 141 MVKRDD----------DLRD---LCNVQTHSRTITHRKTDSTIKAVAADPN-TVDGLNSVGAIIDELHLFGKQE--DMYS 204 (546)
T ss_pred HHHhCc----------chhh---hhccccceeEEEecccceeeeeeccCCC-cccCCCcceEEEehhhhhcCHH--HHHH
Confidence 654322 0000 0011111111222211 112222211 1222345689999999865542 4444
Q ss_pred HHHHhCC--cCCceeeeee
Q 011100 228 VVFQCLP--KNRQTLLFSA 244 (493)
Q Consensus 228 ~i~~~~~--~~~~~i~~SA 244 (493)
.+..-+. ++.+++..|.
T Consensus 205 ~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 205 EAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHhhhccCcCceEEEEec
Confidence 4444332 4666777666
No 278
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.13 E-value=0.031 Score=66.06 Aligned_cols=62 Identities=29% Similarity=0.387 Sum_probs=45.1
Q ss_pred CCCcHHHHhhhhhhhcCCc--EEEEccCCCCchhHhH---HHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 81 RRPTPVQTHCIPKILEGKD--VLGLAQTGSGKTAAFA---LPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~--~lv~a~TGsGKTl~~~---l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
..+++.|.+|+..++.+.+ ++|.|..|+|||.... -++...+... +..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHH
Confidence 3599999999999987644 7889999999997642 2233333322 56788999997665544
No 279
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.09 E-value=0.014 Score=55.63 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 71 AVQTCKELGMRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 71 l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
.+..|...|. +++.|.+.+.. +..+++++++|+||||||.. +-.++..+...+...+++++-.+.+|
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3444544565 56778888875 44567899999999999954 44455544322335578888887776
No 280
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.029 Score=58.22 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=26.3
Q ss_pred ccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 202 ~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
.+...++|||||+|.|.... ...+...+...+....+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 35678899999999886433 234444455555555566554
No 281
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.08 E-value=0.023 Score=56.07 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=24.9
Q ss_pred cHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
-......+..+..++++++.||+|+|||..+.
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34445566667788999999999999997654
No 282
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.08 E-value=0.034 Score=54.04 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=24.8
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....++|||||+|.+... ....+..++...+...++++.+
T Consensus 123 ~~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 123 SADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 345679999999987542 2344555565555555555443
No 283
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.023 Score=58.99 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=23.6
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
...++++||||+|+|....+. .+...+..-+....+++.|
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 356789999999998654432 2333344434444455444
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.05 E-value=0.12 Score=51.02 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=33.3
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVG 164 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 164 (493)
-++++|++|+|||++..-.+. .+... +.++++++ |.|.-+.++.+ .++...++++.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~~--G~kV~lV~~D~~R~aA~eQLk---~~a~~~~vp~~~~~~ 163 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQRK--GFKPCLVCADTFRAGAFDQLK---QNATKARIPFYGSYT 163 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHC--CCCEEEEcCcccchhHHHHHH---HHhhccCCeEEeecC
Confidence 378899999999976554333 23332 44566555 45654444333 333334566544443
No 285
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.04 E-value=0.027 Score=51.24 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=23.9
Q ss_pred cceEeeccccccccCCCHHHHHHHHHhCCcCCc-eeeeeeccc
Q 011100 206 TKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ-TLLFSATMT 247 (493)
Q Consensus 206 ~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~-~i~~SAT~~ 247 (493)
.++|||||+|.+... ....+..++........ +++++++.+
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 468999999987433 23344444544333333 466777654
No 286
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.04 E-value=0.059 Score=53.69 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=62.4
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc-cc-HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT-PT-RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~-Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
.++++|++|+|||.+..-.+ ..+... +.+++++. .+ +.-+ .+.+..++...++.+.......+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA-~~L~~~--g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~------- 163 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLA-RYFKKK--GLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV------- 163 (437)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHHc--CCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH-------
Confidence 47889999999998755444 334432 44555544 32 3322 2233333333344432111111100
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHH
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 255 (493)
..+...+... ...++||||.+-+... ...-..+..+.....+..-++.++||...+......
T Consensus 164 ----------~i~~~al~~~-------~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~ 226 (437)
T PRK00771 164 ----------EIAKEGLEKF-------KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAK 226 (437)
T ss_pred ----------HHHHHHHHHh-------hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHH
Confidence 0112233322 2237899999965432 122334455555555555677788887654444333
No 287
>PRK04195 replication factor C large subunit; Provisional
Probab=96.03 E-value=0.033 Score=56.84 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999997644
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.079 Score=52.00 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=63.7
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
-+++.||+|+|||....-.+....... +.++.++. +.|..+..+.. .++...++.+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~eQLk---~yAe~lgvp~~~~-------------- 285 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAIEQLK---RYADTMGMPFYPV-------------- 285 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHHHHHH---HHHHhcCCCeeeh--------------
Confidence 377899999999987665554432222 33454444 44555444333 3322223332110
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc-CCCHHHHHHHHHhCC---cCCceeeeeecccc-hHH
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD-VGFEEELRVVFQCLP---KNRQTLLFSATMTS-DLQ 251 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~-~~~ 251 (493)
..+..+...+.. .++++|+||=+.+... ......+..++.... +.-.++.+|||... ++.
T Consensus 286 -------~~~~~l~~~l~~--------~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 286 -------KDIKKFKETLAR--------DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred -------HHHHHHHHHHHh--------CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 011222222221 3457899997765432 222344445554432 22356788998876 555
Q ss_pred HHHHHh
Q 011100 252 TLLELS 257 (493)
Q Consensus 252 ~~~~~~ 257 (493)
.....+
T Consensus 351 ~~~~~f 356 (432)
T PRK12724 351 TVLKAY 356 (432)
T ss_pred HHHHHh
Confidence 555544
No 289
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.02 E-value=0.093 Score=54.21 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=49.0
Q ss_pred cHHHHhhhhhhh---cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 84 TPVQTHCIPKIL---EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 84 ~~~Q~~~i~~i~---~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
+|.=.+=|..++ ..+-.++.+|=|.|||.+..+.+...+... +.+++|.+|...-+.++++.+...+..
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 444444444433 446688899999999988665555444312 678999999999999999888777653
No 290
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.04 Score=55.38 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=27.7
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
+.+++.||+|+|||.... .+.+.+.....+.+++++.. ..+..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~-~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS-EKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 359999999999997543 34444544333456777654 3344333
No 291
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.03 Score=53.42 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=27.3
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecc
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 246 (493)
....+++|||+||.|... -...+.+.+..=|.+..+++.|..+
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 456789999999998643 3345555555544555555555444
No 292
>PLN03025 replication factor C subunit; Provisional
Probab=96.00 E-value=0.065 Score=51.54 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=24.0
Q ss_pred CcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeec
Q 011100 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 245 (493)
..+++|+||+|.|.... ...+...+...+....+++ +++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE-EeC
Confidence 46799999999986442 3445555555444454444 443
No 293
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.045 Score=52.65 Aligned_cols=40 Identities=23% Similarity=0.084 Sum_probs=28.4
Q ss_pred CcHHHHhhhhhhhcC-----CcEEEEccCCCCchhHhHHHHHHHhh
Q 011100 83 PTPVQTHCIPKILEG-----KDVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~-----~~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
++|||...+..+... ..+++.||.|.||+..+...+ ..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A-~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA-QGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH-HHHc
Confidence 478888888776642 248899999999997654433 3443
No 294
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.94 E-value=0.042 Score=55.12 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=57.9
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
+.+++.||+|+|||.... .+.+.+... +.+++++.. ..+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~-~~f~~~~~~~l~~-------------~------------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS-ELFTEHLVSAIRS-------------G------------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH-HHHHHHHHHHHhc-------------c-------------
Confidence 458999999999996533 444444432 455666653 3444433322210 0
Q ss_pred CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-CHHHHHHHHHhC-CcCCceeeeeecccchHHHH
Q 011100 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCL-PKNRQTLLFSATMTSDLQTL 253 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~ 253 (493)
..+.+.. .+.+.++++|||+|.+.... ....+..++..+ ..+.++++.|-+.|..+..+
T Consensus 192 -------~~~~f~~----------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 192 -------EMQRFRQ----------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -------hHHHHHH----------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 0011111 13456799999999876432 233344444333 23456666555566655443
No 295
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.049 Score=56.80 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=25.3
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
+...+++||||+|.|....+ ..+...+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 45678999999998754322 34445555555566566554
No 296
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.91 E-value=0.083 Score=43.11 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhHhH
Q 011100 100 VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~ 115 (493)
+++.||.|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999997543
No 297
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.91 E-value=0.028 Score=52.93 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+.++++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 34799999999999987543
No 298
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.89 E-value=0.018 Score=52.92 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP 126 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~ 126 (493)
....+|+.+++|+-+.+.+.. ..-=++|.||||||||.+ +..++..+.++.
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 344567777777666653311 011289999999999977 556777776653
No 299
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.046 Score=58.43 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLF 242 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 242 (493)
...+++||||||+|.... ...+.+++..-+.+..+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 456899999999985432 23444444444445555554
No 300
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.035 Score=57.82 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=23.4
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLF 242 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 242 (493)
..++++||||+|+|....+ ..+.+.+..-+.+..+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 4678999999998865433 3344445554444445544
No 301
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.85 E-value=0.072 Score=56.69 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh-cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC
Q 011100 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE-LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 363 (493)
...|.......+......+ +++||.++++..+.++.+.|++ .+..+..+||+++..+|...+.....|+.+|+|+|..
T Consensus 172 GSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 3445444444444333334 6899999999999999999876 4788999999999999999999999999999999974
Q ss_pred CCCCCCCCCcCeEEEecC
Q 011100 364 ASRGLDIPTVDLVLNYDI 381 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~ 381 (493)
.. -+.+.++.+||.-+.
T Consensus 251 al-~~p~~~l~liVvDEe 267 (679)
T PRK05580 251 AL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred Hh-cccccCCCEEEEECC
Confidence 32 245677888776553
No 302
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.84 E-value=0.023 Score=58.75 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=54.8
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH-HHHHHhcc
Q 011100 82 RPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA-EQFKALGS 153 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~~ 153 (493)
..+|+|.+.+..+... +.++++.++-+|||.+.+..+...+...+ ..+|++.||..+|.++. ..+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 4789999999887765 56999999999999976666666556654 35899999999999887 55666554
No 303
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.83 E-value=0.022 Score=64.79 Aligned_cols=68 Identities=28% Similarity=0.232 Sum_probs=55.6
Q ss_pred CcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 83 PTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+.......++|+|+=|+..+..+.+++....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 6899999997 3578899999999999999887777777654333569999999999998888776643
No 304
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.80 E-value=0.069 Score=54.46 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=26.8
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||||+|.... ...+...+..-+....+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4677899999999886432 344555555556666666655
No 305
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.76 E-value=0.024 Score=53.39 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=44.6
Q ss_pred cCCCCCcHHHHhhhhhhhcCC-cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 78 LGMRRPTPVQTHCIPKILEGK-DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~-~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
..|..+++-|...+..+...+ +++++|.||||||+. +-.+...+.. ..+++.+--|.+|-.
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~---~eRvItiEDtaELql 214 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS---DERVITIEDTAELQL 214 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC---cccEEEEeehhhhcc
Confidence 456778999999998877765 999999999999974 2222222222 447888888888744
No 306
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.74 E-value=0.028 Score=54.16 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=26.8
Q ss_pred CcHHHHhhhhhhh----cCC---cEEEEccCCCCchhHhHHHH
Q 011100 83 PTPVQTHCIPKIL----EGK---DVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 83 ~~~~Q~~~i~~i~----~~~---~~lv~a~TGsGKTl~~~l~~ 118 (493)
++|||...+..+. +++ -.++.||.|.||+..+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 5788888887765 333 48899999999997655433
No 307
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.74 E-value=0.064 Score=54.87 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=72.3
Q ss_pred CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh-cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC
Q 011100 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE-LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 363 (493)
...|......++......+ +++||.++++.-+.++++.|++ .+..+..+||+++..+|.....+..+|+.+|+|+|..
T Consensus 7 GsGKT~v~l~~i~~~l~~g-~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALG-KSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred CCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 3445555455555444444 6899999999999999998876 4678899999999999999999999999999999964
Q ss_pred CCCCCCCCCcCeEEEecC
Q 011100 364 ASRGLDIPTVDLVLNYDI 381 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~ 381 (493)
+-. ..+.++.+||.-+.
T Consensus 86 alf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 86 ALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred HHc-CcccCCCEEEEECC
Confidence 322 45667888776443
No 308
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.036 Score=54.32 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=23.4
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||+|.+....+ ..+...+...+....+++.|
T Consensus 117 ~~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 35668999999998864332 23334444444444555543
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.72 E-value=0.033 Score=51.06 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=37.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
.|..+++.|++|+|||+..+..+...+.+ +.++++++- .+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 35679999999999998776666666644 667888873 345566666666653
No 310
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.72 E-value=0.025 Score=50.19 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.++|+.||+|+|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 359999999999997543
No 311
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.08 Score=54.89 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=16.5
Q ss_pred CcEEEEccCCCCchhHhHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~ 118 (493)
+-+|+.||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999998766543
No 312
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.065 Score=55.44 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=25.6
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||+|+|.... ...+...+...+.+..+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4677899999999886543 234445555555555555555
No 313
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.69 E-value=0.07 Score=54.94 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=23.4
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||||.|.... ...+...+..-+...-++++|
T Consensus 117 ~~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 117 TFKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred hCCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 3456899999999875432 234444455444444444444
No 314
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.68 E-value=0.11 Score=53.48 Aligned_cols=134 Identities=17% Similarity=0.134 Sum_probs=79.5
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCC--CceEEEEEcCCCHHHHHHHh
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL--HLRCEVVVGGMDLLTQAKSL 175 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~ 175 (493)
+-.++..|==.|||.... +++..+...-.+.++++++|.+..++.+++++...+... +-.+..+.| ... .-.+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEe
Confidence 557889999999998755 566655544348889999999999999999888765421 111111122 110 0001
Q ss_pred cCC--CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccc
Q 011100 176 MNR--PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTS 248 (493)
Q Consensus 176 ~~~--~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 248 (493)
.++ ..|.+++- .... ...=.+++++|||||+.+.+..+...+ -.+.. .+++++++|.|-..
T Consensus 330 ~nG~kstI~FaSa-------rntN--siRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 330 PDGSRSTIVFASS-------HNTN--GIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNTG 392 (738)
T ss_pred cCCCccEEEEEec-------cCCC--CccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCCC
Confidence 111 24444421 1110 122247899999999987664333333 22222 38889999988553
No 315
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.075 Score=54.67 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=25.2
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||+|+|....+ ..+...+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 45678999999998865432 33444455545555566555
No 316
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.66 E-value=0.12 Score=50.21 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
.+.+-+.|+.|.|||+..- ++........+.+ +...+.+.++++.+..+. |+.+.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd--~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~-------- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMD--LFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDP-------- 116 (362)
T ss_pred CceEEEECCCCCchhHHHH--HHHHhCCcccccc----ccccHHHHHHHHHHHHHh-----------CCCcc--------
Confidence 4569999999999997433 3222222212222 255577888888877763 11111
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC-CcCCceeeeeecccchH
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PKNRQTLLFSATMTSDL 250 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 250 (493)
+....... .+...+|++||+|. .|.+-...+..++..+ ..+.-+++.|-++|.++
T Consensus 117 ------------l~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 ------------LPQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ------------HHHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 11111111 23456899999994 3444334445555443 34667788888887654
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.039 Score=54.49 Aligned_cols=131 Identities=19% Similarity=0.257 Sum_probs=62.6
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
|.-+.+.||||+|||......+...+.........++.+.+.-.. ..+.+..++..+|+.+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~------------- 255 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK------------- 255 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC-------------
Confidence 445889999999999876544433332222223345555552221 12223333333344443222
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC-CCHHHHHHHHHhCCcCCceeeeeecccc-hHHHHH
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCLPKNRQTLLFSATMTS-DLQTLL 254 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~ 254 (493)
++..+...+.. +.+.+.++||.+-+.... .....+..+.....+...++.+|||... ++..+.
T Consensus 256 --------~~~dl~~al~~-------l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 256 --------DIADLQLMLHE-------LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred --------CHHHHHHHHHH-------hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 22222222221 345577888886543211 1122233322222234456888999643 455555
Q ss_pred HHh
Q 011100 255 ELS 257 (493)
Q Consensus 255 ~~~ 257 (493)
..+
T Consensus 321 ~~f 323 (420)
T PRK14721 321 SAY 323 (420)
T ss_pred HHh
Confidence 444
No 318
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.055 Score=57.16 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=17.4
Q ss_pred CcEEEEccCCCCchhHhHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILH 120 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~ 120 (493)
+-+.+.||||+|||++....+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 44788999999999876654433
No 319
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.53 E-value=0.026 Score=49.85 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=25.7
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeec
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 245 (493)
...+.+|+||||.|.+. -...+++.+.......++.+.--+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 45678999999987543 445666666655545555443333
No 320
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.50 E-value=0.041 Score=59.37 Aligned_cols=71 Identities=28% Similarity=0.271 Sum_probs=56.8
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
..|++-|.+|+... ...++|.|..|||||.+...-+.+.+... -...++|+++-|+..|..+.+++..+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999753 45699999999999999887777776543 2345799999999999999998887754
No 321
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.12 Score=50.57 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=26.8
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecc
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 246 (493)
....+++||||+|.|... -...+...+..-+.+..++++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 456789999999987433 3344555555544455555555444
No 322
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.09 Score=54.76 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=25.2
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||+|+|.... ...+...+..-+.+..+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4677899999999876432 244555555544555555444
No 323
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.44 E-value=0.0089 Score=61.41 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=91.7
Q ss_pred CCcHHHHhhhhhhhc--------CC--cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 82 RPTPVQTHCIPKILE--------GK--DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~--------~~--~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.++..|.+++-...+ |. .+++-...|-||--+..-.|+....+. ..++|++.-+..|--+..+.+...
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchhhc
Confidence 466778888754332 32 266666666666543333455555553 567999999989988878888877
Q ss_pred ccCCCceEEEEEc----CCCHHHHHHHhcCCCcEEEECcchHHHHHhcC-CCCCCcc---------CCcceEeecccccc
Q 011100 152 GSGLHLRCEVVVG----GMDLLTQAKSLMNRPHVVIATPGRIKVLLEED-PDIPPVF---------SRTKFLVLDEADRV 217 (493)
Q Consensus 152 ~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~l---------~~~~~vViDEah~~ 217 (493)
+.. ++.+..+.- ..+..+. -.-+-.|+++|+..|..-.... ......+ +.=.+||+||||+.
T Consensus 342 gA~-~I~V~alnK~KYakIss~en---~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 342 GAT-GIAVHALNKFKYAKISSKEN---TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred CCC-Cccceehhhccccccccccc---CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 644 455544321 1111000 0112468999986554322211 0000000 11157999999987
Q ss_pred ccC---------CCHHHHHHHHHhCCcCCceeeeeecc
Q 011100 218 LDV---------GFEEELRVVFQCLPKNRQTLLFSATM 246 (493)
Q Consensus 218 ~~~---------~~~~~~~~i~~~~~~~~~~i~~SAT~ 246 (493)
.+. ..+..+..+-+.+| +.+++..|||=
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 652 24566667667775 78899999993
No 324
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.11 Score=49.38 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=31.0
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHH
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 254 (493)
....+++|||+||.|... -...+.+.+..=|.+..+++.|..+..-+..+.
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 466789999999998543 334555555554555556665555443333433
No 325
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.41 E-value=0.18 Score=49.02 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=27.2
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeec
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 245 (493)
....+++||||||.|.... ...+...+..-+.+..++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 3567899999999885432 34456666665555556666533
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.40 E-value=0.045 Score=57.39 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=37.9
Q ss_pred ceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccc
Q 011100 207 KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTS 248 (493)
Q Consensus 207 ~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 248 (493)
=++|+|..|++.+......++.+++..|++.+.++.|=+-|.
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 489999999999999999999999999999999998887653
No 327
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.40 E-value=0.03 Score=55.55 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=30.6
Q ss_pred cHHHHhhhhhhhcCCc--EEEEccCCCCchhHhHHHHHHHhhcC
Q 011100 84 TPVQTHCIPKILEGKD--VLGLAQTGSGKTAAFALPILHRLAED 125 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~--~lv~a~TGsGKTl~~~l~~l~~l~~~ 125 (493)
++.|.+.+..++.... ++|.||||||||.+ +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 6777777777777655 88899999999976 55566665543
No 328
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.32 Score=44.80 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=47.4
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCC-----cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEE
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGK-----DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLAL 132 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-----~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~l 132 (493)
+...|++..=-+...++|+..=+-.. -+|.+..|+ -+++.||+|+||+..+-..+-. .....
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPI------KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE-------AnSTF 194 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPI------KFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE-------ANSTF 194 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecc------cchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh-------cCCce
Confidence 34567665434555666665322110 135566663 4899999999999533222222 11467
Q ss_pred EEcccHHHHHHHHHHHHHh
Q 011100 133 VITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 133 il~Pt~~L~~q~~~~~~~~ 151 (493)
+-+-+..|+..|..+-.++
T Consensus 195 FSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 195 FSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred EEeehHHHHHHHhccHHHH
Confidence 7777778888776554444
No 329
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.078 Score=53.91 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.4
Q ss_pred cEEEEccCCCCchhHhHHHH
Q 011100 99 DVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~ 118 (493)
.+++.||.|+|||.++-+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999998765543
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.31 E-value=0.077 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=17.2
Q ss_pred CcEEEEccCCCCchhHhHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILH 120 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~ 120 (493)
+.+++.||||+|||......+..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45888999999999775544433
No 331
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.31 E-value=0.14 Score=46.57 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=33.6
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 95 LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
..|.-+++.|++|+|||......+...+.+ +.++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 346679999999999997655444444333 5567888743 2334555555444
No 332
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.26 E-value=0.15 Score=53.76 Aligned_cols=95 Identities=20% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc-C-CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC
Q 011100 285 KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL-D-QEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 362 (493)
.+.+......++......+ +++||.++.+..+..+...|+.. + ..+..+|+++++.+|...+....+|+.+|+|.|-
T Consensus 170 GSGKTevyl~~i~~~l~~G-k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAG-RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcC-CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 4567777777887777766 78999999999999999999865 3 5789999999999999999999999999999997
Q ss_pred CCCCCCCCCCcCeEEEecC
Q 011100 363 VASRGLDIPTVDLVLNYDI 381 (493)
Q Consensus 363 ~~~~Gidi~~v~~Vi~~~~ 381 (493)
.+. =.-+++...||..+-
T Consensus 249 SAv-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 249 SAV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred eeE-EeccCCCCEEEEEcC
Confidence 542 245567777776544
No 333
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.25 E-value=0.047 Score=53.16 Aligned_cols=43 Identities=23% Similarity=0.118 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
+..++++||||||||.. +..++..+.......+++.+-...++
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEecCchh
Confidence 34589999999999975 44556666543334455655444443
No 334
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.20 E-value=0.27 Score=48.87 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=22.4
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
.++++.||+|+|||...- .++..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 569999999999997633 344444433223344444
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.17 E-value=0.064 Score=47.16 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=22.6
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLF 242 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 242 (493)
....+++||||+|.+.... ...+...+...++...++++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 4667899999999975432 23344444443333444433
No 336
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.16 E-value=0.087 Score=55.48 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=78.1
Q ss_pred EEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh-cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEE
Q 011100 281 IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE-LDQEAVALHSFKSQSQRLSALHRFKSGQATILL 359 (493)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 359 (493)
..++.+.+......++......+ +++||.++.+.....+...++. .|..+.++|+++++.+|.....+...|+.+|+|
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVI 301 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVI 301 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEE
Confidence 34566778888888888888877 8999999999988888777765 488999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcCeEEE
Q 011100 360 ATDVASRGLDIPTVDLVLN 378 (493)
Q Consensus 360 ~T~~~~~Gidi~~v~~Vi~ 378 (493)
.|-.+- =.-++++-.||.
T Consensus 302 GtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 302 GTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred Eechhh-cCchhhccEEEE
Confidence 996431 234456666664
No 337
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.16 E-value=0.18 Score=53.82 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=64.0
Q ss_pred CeEEEEecchhhHHHHHHHHHh----cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-CCCCCCCCCCcCeEEE
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEE----LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-VASRGLDIPTVDLVLN 378 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~v~~Vi~ 378 (493)
.+++|.++|..-|.+.+..+++ .++.+..+||+++..+|...+..+.+|+..|+|+|. .+...+.+.++.+||.
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 6899999999999887776665 468899999999999999999999999999999996 4555678888888876
No 338
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.11 Score=49.76 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=26.7
Q ss_pred CcHHHHhhhhhhhcC-----CcEEEEccCCCCchhHhHHH
Q 011100 83 PTPVQTHCIPKILEG-----KDVLGLAQTGSGKTAAFALP 117 (493)
Q Consensus 83 ~~~~Q~~~i~~i~~~-----~~~lv~a~TGsGKTl~~~l~ 117 (493)
++|||...+..+... ..+++.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 478888888877642 24899999999999765543
No 339
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.12 E-value=0.13 Score=51.71 Aligned_cols=52 Identities=25% Similarity=0.188 Sum_probs=34.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|.-+++.|++|+|||+..+..+...... +.+++|+.-. +-..|+...+..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc-ccHHHHHHHHHHc
Confidence 34568999999999997655544443322 5578888754 4456666666555
No 340
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.093 Score=51.30 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=31.2
Q ss_pred CcceEeeccccccccC-CCHHHHHHHHHhCCc-CCceeeeeecccchHHH
Q 011100 205 RTKFLVLDEADRVLDV-GFEEELRVVFQCLPK-NRQTLLFSATMTSDLQT 252 (493)
Q Consensus 205 ~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~ 252 (493)
++++++||.++.+... .....+-.++..+.. +.|+++.|-.+|..+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 6789999999987654 234444445555543 44777777777765543
No 341
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.22 Score=50.41 Aligned_cols=52 Identities=25% Similarity=0.258 Sum_probs=32.6
Q ss_pred ccccccCCCCHHHHHHHHH---cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhH
Q 011100 59 TVTFAGLGLAEWAVQTCKE---LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~ 113 (493)
..+|++.|--..+...|.. ..+++|-.++.-.+.. -..++++||+|+|||+.
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 4577777766666666543 2444443333332221 34599999999999974
No 342
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.05 E-value=0.11 Score=55.38 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=23.9
Q ss_pred CcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccch
Q 011100 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSD 249 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 249 (493)
...++||||+|++... ....++..+. ..+++++++|-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 3458999999986432 2223333332 45677777775543
No 343
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.07 Score=55.61 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=24.1
Q ss_pred ccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 202 ~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
.+...+++||||+|.|.... ...+...+..-+...-+|+++
T Consensus 124 ~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 35677899999999986432 233444444434444444444
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.03 E-value=0.13 Score=51.50 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999976443
No 345
>PRK10867 signal recognition particle protein; Provisional
Probab=95.01 E-value=0.53 Score=46.94 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=30.0
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEE
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCE 160 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~ 160 (493)
++++|++|+|||++..-.+.. +... .+.+++++. +.|.-+.. .+..++...++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~-l~~~-~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKY-LKKK-KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHHh-cCCcEEEEEccccchHHHH---HHHHHHhhcCCeEE
Confidence 788999999999875544443 3322 133455444 44544332 22333333455544
No 346
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.98 E-value=0.052 Score=52.78 Aligned_cols=43 Identities=30% Similarity=0.285 Sum_probs=25.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCC-CeEEEEEcccHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-GVLALVITPTRE 139 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~-~~~~lil~Pt~~ 139 (493)
.+.-++++||||||||.. +..++..+..... +.+++.+-...+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~~~~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAEAPDSHRKILTYEAPIE 176 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhhcCCCCcEEEEeCCCce
Confidence 345699999999999975 3445555543322 334544443333
No 347
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.091 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=17.0
Q ss_pred EEEEccCCCCchhHhHHHHHHHhh
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
+++.||.|+|||.++.. +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 59999999999987554 334443
No 348
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.12 Score=53.59 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=16.5
Q ss_pred cEEEEccCCCCchhHhHHHH
Q 011100 99 DVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~ 118 (493)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998766544
No 349
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.21 Score=49.67 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.2
Q ss_pred cEEEEccCCCCchhHhHHHH
Q 011100 99 DVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~ 118 (493)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38899999999998765543
No 350
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.90 E-value=0.11 Score=52.45 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=61.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK 173 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 173 (493)
.|+.+.+.||||+|||......+....... .+.++.++. +.+.-+.+ .+..+...+++.+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~E---QLk~ya~iLgv~v~~a----------- 413 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGRE---QLHSYGRQLGIAVHEA----------- 413 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHH---HHHHhhcccCceeEec-----------
Confidence 356688899999999987554443332222 123344433 23433322 2333333333332211
Q ss_pred HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCC-CHHHHHHHHHhCCcCCceeeeeeccc-chHH
Q 011100 174 SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQCLPKNRQTLLFSATMT-SDLQ 251 (493)
Q Consensus 174 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~ 251 (493)
.+++.+...+.. +.++++|+||.+-+..... ....+..+... .....++.++++.. .++.
T Consensus 414 ----------~d~~~L~~aL~~-------l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 414 ----------DSAESLLDLLER-------LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred ----------CcHHHHHHHHHH-------hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHH
Confidence 123334444443 3456899999998643211 11222222222 23345677777764 2444
Q ss_pred HHHH
Q 011100 252 TLLE 255 (493)
Q Consensus 252 ~~~~ 255 (493)
.+..
T Consensus 476 eii~ 479 (559)
T PRK12727 476 EVVR 479 (559)
T ss_pred HHHH
Confidence 4433
No 351
>PF13173 AAA_14: AAA domain
Probab=94.90 E-value=0.2 Score=40.89 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=24.5
Q ss_pred cceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecc
Q 011100 206 TKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246 (493)
Q Consensus 206 ~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 246 (493)
-.+|+|||+|.+.+ +...+..+.... .+.+++ +|++.
T Consensus 62 ~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii-~tgS~ 98 (128)
T PF13173_consen 62 KKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKII-LTGSS 98 (128)
T ss_pred CcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEE-EEccc
Confidence 35899999999864 557777777754 344444 44443
No 352
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.069 Score=51.50 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=24.9
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
...++|||||||.|... ....+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 56789999999987552 3445555555544455555544
No 353
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.89 E-value=0.16 Score=48.31 Aligned_cols=44 Identities=30% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE-cccHHHHHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI-TPTRELAYQLA 145 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil-~Pt~~L~~q~~ 145 (493)
++.+++.|++|+|||..+. .+...+... +..++++ +| +|+.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~~--g~~v~~~~~~--~l~~~lk 200 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAKK--GVSSTLLHFP--EFIRELK 200 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCEEEEEHH--HHHHHHH
Confidence 4579999999999997644 344444432 4444443 34 4554443
No 354
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.89 E-value=0.2 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=16.0
Q ss_pred EEEEccCCCCchhHhHHHHHHHh
Q 011100 100 VLGLAQTGSGKTAAFALPILHRL 122 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l 122 (493)
++|.|+||+|||++.-. ++..+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 45999999999987544 34444
No 355
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.081 Score=53.47 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.1
Q ss_pred EEEEccCCCCchhHhHHH
Q 011100 100 VLGLAQTGSGKTAAFALP 117 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~ 117 (493)
+|+.||+|+|||..+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999875543
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.86 E-value=0.24 Score=46.31 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=24.9
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELA 141 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~ 141 (493)
+-+++.|++|+|||.+..-.+.. +... +.+++++. +.|.-+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~~~--g~~V~li~~D~~r~~a 115 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LKKQ--GKSVLLAAGDTFRAAA 115 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHhc--CCEEEEEeCCCCCHHH
Confidence 34777899999999875554433 3322 44565555 344433
No 357
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.86 E-value=0.12 Score=48.10 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=27.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhc-CC---CCeEEEEEcccHHHHHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAE-DP---YGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~-~~---~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
.++++.|+||-|||...--..-.+-.. +. .-+.+++-+|...-....+..+
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 579999999999997532222111111 11 1234455566665555555443
No 358
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.11 Score=50.63 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=18.9
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAE 124 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~ 124 (493)
.++++.|+||+|||.+.- -++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 459999999999997643 34555544
No 359
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.15 Score=53.39 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=16.4
Q ss_pred CcEEEEccCCCCchhHhHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~ 118 (493)
..+|+.||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 457999999999998755433
No 360
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.80 E-value=0.057 Score=46.95 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
+-.++++++.|++|+|||..+...+...+.. +..++++ +..+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEe-ecCceeccc
Confidence 3456889999999999997755544444443 5555554 455666554
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.11 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCCchhHhHHHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILH 120 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~ 120 (493)
++.+++.||+|+|||....-.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 455889999999999775554443
No 362
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.26 Score=42.66 Aligned_cols=104 Identities=16% Similarity=0.019 Sum_probs=56.7
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
+-.++.||++||||...+-.+...... +.++++..|-..- .+ +...+.-.-|. .
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD~----------R~---~~~~V~Sr~G~----------~ 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAIDT----------RY---GVGKVSSRIGL----------S 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHc---CCeEEEEeccccc----------cc---ccceeeeccCC----------c
Confidence 346889999999998644444333333 6678888885321 11 11111111111 1
Q ss_pred CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHh
Q 011100 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC 232 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~ 232 (493)
..-++|-.+..+...+..... ...++.|.||||+-+. ...-..+..+...
T Consensus 59 ~~A~~i~~~~~i~~~i~~~~~----~~~~~~v~IDEaQF~~-~~~v~~l~~lad~ 108 (201)
T COG1435 59 SEAVVIPSDTDIFDEIAALHE----KPPVDCVLIDEAQFFD-EELVYVLNELADR 108 (201)
T ss_pred ccceecCChHHHHHHHHhccc----CCCcCEEEEehhHhCC-HHHHHHHHHHHhh
Confidence 234555566666666665422 1127899999999633 2233444444444
No 363
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.74 E-value=0.2 Score=45.63 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=32.5
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|..+++.|++|+|||......+.+.+.+ +..++++.- .+...++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45679999999999997655555554443 445677664 23344554444443
No 364
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.17 Score=54.25 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=51.5
Q ss_pred CCeEEEEecchhhHHHHHHHHHhcC-----Cceee-ccCCCCHHHHHHHHHHhhcCCCeEEEEcCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEELD-----QEAVA-LHSFKSQSQRLSALHRFKSGQATILLATDVA 364 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 364 (493)
++++++.++|..-+.+.++.|..+. ..+.. +||.|+..+++.++++|.+|+.+|||+|+.+
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3789999999998888888887653 33323 9999999999999999999999999999854
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.69 E-value=0.71 Score=45.98 Aligned_cols=58 Identities=24% Similarity=0.250 Sum_probs=30.8
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEE
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEV 161 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~ 161 (493)
-++++|++|+|||.+..-.+....... +.+++++. +.|.-+.+ .+..++...++++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchHHHH---HHHHHHHhcCCceEe
Confidence 378899999999987655444422122 34455444 34443333 233333333555443
No 366
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=0.16 Score=50.07 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=24.7
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeec
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 245 (493)
....+++||||+|+|.... ...+...+..-+.+..+++.|.+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 3567899999999985442 23444455543444444444444
No 367
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.66 E-value=0.039 Score=53.14 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=30.9
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
+..+.+++++|+||||||.. +-.++..+.. ..+++.+-.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~---~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP---QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC---CCCEEEECCCcccc
Confidence 44578899999999999964 3344444433 45677777887763
No 368
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.65 E-value=0.4 Score=47.11 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=17.7
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHh
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRL 122 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l 122 (493)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 56999999999999764 3344444
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.63 E-value=0.29 Score=46.78 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
.-+++.||+|+|||....-.+.. +... +.+++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~-l~~~--g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHK-YKAQ--GKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHhc--CCeEEEEe
Confidence 34778999999999765543332 3222 44565554
No 370
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.63 E-value=0.24 Score=48.47 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=33.1
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|.-+++.|++|+|||...+..+...... +.+++|+.-.. -..|+...+..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EE-s~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEE-SPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCc-CHHHHHHHHHHc
Confidence 34568999999999997655444333222 45788887543 345666555554
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.61 E-value=1.2 Score=38.49 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+++.|++|+|||......+. .+... +.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~-~~~~~--g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL-YLKKK--GKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC--CCcEEEEE
Confidence 57889999999987554333 33332 44454433
No 372
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.26 Score=51.64 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.4
Q ss_pred cEEEEccCCCCchhHhHHH
Q 011100 99 DVLGLAQTGSGKTAAFALP 117 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~ 117 (493)
.+|+.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999875543
No 373
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.23 Score=51.00 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=25.6
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||+|+|.... ...+...+...+....+++.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999976542 244555555555555555555
No 374
>PRK05973 replicative DNA helicase; Provisional
Probab=94.52 E-value=0.089 Score=47.75 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=38.5
Q ss_pred hhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 92 ~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.-+..|.-++|.|++|+|||...+..+.+...+ +.+++|++--- =..|+.+.+..+
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEe-s~~~i~~R~~s~ 114 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEY-TEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeC-CHHHHHHHHHHc
Confidence 344556779999999999998777666666544 55677776432 246666666665
No 375
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.51 E-value=0.067 Score=49.16 Aligned_cols=39 Identities=21% Similarity=0.109 Sum_probs=27.3
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 95 LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
..|.-+++.|++|+|||...+-.+++.+.+. +..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEe
Confidence 3456789999999999976555555554442 44678877
No 376
>PTZ00293 thymidine kinase; Provisional
Probab=94.49 E-value=0.18 Score=44.60 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
|+-.++.||++||||.-.+-.+...... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 4457889999999997645444433333 55688888864
No 377
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.45 E-value=0.23 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=16.9
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhh
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
.+++.||.|+|||..+.. +...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~~-la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI-FAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 478999999999965433 444443
No 378
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.40 E-value=0.46 Score=45.65 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=23.6
Q ss_pred CcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
..++|+|||+|.+... ....+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4578999999987543 2344555555555555555544
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.40 E-value=0.074 Score=46.22 Aligned_cols=144 Identities=15% Similarity=0.072 Sum_probs=74.8
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH-HHHHHHHHhccCCCceEEEEEcCCCHHHHHHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY-QLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS 174 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~-q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 174 (493)
....+++..++|.|||.+++--++..+.. +.+++++-=.+--.. -=...+..+ . ++... ..+......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---G~~V~ivQFlKg~~~~GE~~~l~~l-~--~v~~~--~~g~~~~~~--- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---GKKVGVVQFIKGAWSTGERNLLEFG-G--GVEFH--VMGTGFTWE--- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---CCeEEEEEEecCCCccCHHHHHhcC-C--CcEEE--ECCCCCccc---
Confidence 45679999999999999988888887777 667777653221100 001112221 1 22222 111110000
Q ss_pred hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH--HHHHHHHHhCCcCCceeeeeecccchHHH
Q 011100 175 LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE--EELRVVFQCLPKNRQTLLFSATMTSDLQT 252 (493)
Q Consensus 175 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 252 (493)
....+--.......+...... ..-..+++||+||+-...+.++- ..+..++...|....+|+..-.+|..+..
T Consensus 90 -~~~~~e~~~~~~~~~~~a~~~----l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 90 -TQDRERDIAAAREGWEEAKRM----LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred -CCCcHHHHHHHHHHHHHHHHH----HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 000000000001111111111 11256799999999988887753 55666777766666666555556666655
Q ss_pred HHH
Q 011100 253 LLE 255 (493)
Q Consensus 253 ~~~ 255 (493)
.+.
T Consensus 165 ~AD 167 (191)
T PRK05986 165 AAD 167 (191)
T ss_pred hCc
Confidence 544
No 380
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.38 E-value=0.36 Score=44.11 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=34.5
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|.-+++.|++|+|||......+...+.+ +.+++++.=-.. ..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 34668999999999997766666555544 566777775433 34555555554
No 381
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.32 E-value=0.27 Score=52.05 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=63.3
Q ss_pred CeEEEEecchhhHHHHHHHHHh----cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-CCCCCCCCCcCeEEE
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEE----LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-ASRGLDIPTVDLVLN 378 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidi~~v~~Vi~ 378 (493)
.+++|.+++..-|.+.++.+++ .++.+..+||+++..+|...++...+|+..|+|+|.. +...+++.++.+||.
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 5899999999999888776665 3789999999999999999999999999999999964 445677788888875
No 382
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.31 E-value=0.26 Score=41.70 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=38.6
Q ss_pred CCcceEeeccccccccCCC--HHHHHHHHHhCCcCCceeeeeecccchHHHHHH
Q 011100 204 SRTKFLVLDEADRVLDVGF--EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 255 (493)
..+++||+||+-...+.++ ...+..++...|....+|+.+-.+|+.+...+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 5679999999998877664 356777778777777777777777776665543
No 383
>PRK06620 hypothetical protein; Validated
Probab=94.30 E-value=0.079 Score=47.59 Aligned_cols=18 Identities=28% Similarity=0.124 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
+.+++.||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997433
No 384
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.30 E-value=0.66 Score=43.28 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=21.9
Q ss_pred CcHHHHhhhhhhh----cCC-cEEEEccCCCCchhHhH
Q 011100 83 PTPVQTHCIPKIL----EGK-DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 83 ~~~~Q~~~i~~i~----~~~-~~lv~a~TGsGKTl~~~ 115 (493)
+++.+.+++..+. .+. .+++.||+|+|||....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555555555432 233 48899999999997644
No 385
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.21 E-value=0.13 Score=48.62 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=27.5
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
.++|++||.|+|||..+-+.+-.. .....+.+=+.-|.+-++++...|+
T Consensus 163 pSmIlWGppG~GKTtlArlia~ts---k~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTS---KKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhc---CCCceEEEEEeccccchHHHHHHHH
Confidence 469999999999997543322211 1113345555555555554444443
No 386
>PF05729 NACHT: NACHT domain
Probab=94.19 E-value=0.39 Score=40.84 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=24.7
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCC-CC--eEEEEEcccHHHHH
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDP-YG--VLALVITPTRELAY 142 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~-~~--~~~lil~Pt~~L~~ 142 (493)
-++|.|+.|+|||.... -++..+.... .. ..+.+..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 37899999999997644 3444444332 22 13444445544444
No 387
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.16 E-value=0.41 Score=47.04 Aligned_cols=116 Identities=20% Similarity=0.183 Sum_probs=54.2
Q ss_pred EEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH----HHHHHHhccC-CCceEEEEEcCCCHHHHHHHh
Q 011100 101 LGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL----AEQFKALGSG-LHLRCEVVVGGMDLLTQAKSL 175 (493)
Q Consensus 101 lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~----~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~ 175 (493)
++.++.|+|||.+....++..+...+....++++ |+..-+.+. ...+..+... +............. +
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII------L 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE------E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE------e
Confidence 5778999999999888787777766544555665 555444442 2333344333 12222111111110 1
Q ss_pred cCCCcEEEECcch--HHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHH
Q 011100 176 MNRPHVVIATPGR--IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ 231 (493)
Q Consensus 176 ~~~~~Iiv~Tp~~--l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~ 231 (493)
.++..|.+.+.+. -..-+.. ..++++++||+-.+.+..+...+.....
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~G--------~~~~~i~iDE~~~~~~~~~~~~~~~~~~ 123 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIRG--------FEYDLIIIDEAAKVPDDAFSELIRRLRA 123 (384)
T ss_dssp TTS-EEEEES-----SHHHHHT--------S--SEEEEESGGGSTTHHHHHHHHHHHH
T ss_pred cCceEEEEeccccccccccccc--------cccceeeeeecccCchHHHHHHHHhhhh
Confidence 2444566655332 1122221 3457899999988765544444444333
No 388
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.15 E-value=0.16 Score=43.57 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=73.3
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH-HHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL-AEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
++|.-..|=|||.+++-.++..+.. |.+++|+-=.+-=...= ...+..+ ..++....+-.+.....+.. .
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh---G~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~----~ 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH---GLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDR----E 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC---CCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCc----H
Confidence 6667778889999988888888777 66777765222110000 1112222 11122111111111100000 0
Q ss_pred CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH--HHHHHHHHhCCcCCceeeeeecccchHHHHHHH
Q 011100 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE--EELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 256 (493)
.++ ..+...+...... ..-..+++||+||.-..+..++. +.+..++...|....+|+..-..|+.+.....+
T Consensus 102 ~d~--~aa~~~w~~a~~~----l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 102 ADI--AAAKAGWEHAKEA----LADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred HHH--HHHHHHHHHHHHH----HhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 011 1111112211111 11135789999999988877653 566677777777777776665577766666554
No 389
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.03 E-value=0.057 Score=51.93 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=30.1
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
+..+.+++|+|+||||||.. +-.++..+.. ..+++.+=-+.+|.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~---~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA---IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC---CCeEEEecCCCccc
Confidence 34578999999999999964 3445555443 45677766666653
No 390
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.99 E-value=0.43 Score=46.62 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=22.1
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcC
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAED 125 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~ 125 (493)
+-.|+.+++.||+|+|||..... +...+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhhccc
Confidence 44688899999999999975333 55554443
No 391
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.86 E-value=0.42 Score=51.30 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
..++++.||+|+|||..+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35799999999999976544
No 392
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.82 E-value=0.28 Score=47.31 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=26.6
Q ss_pred ccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeee
Q 011100 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244 (493)
Q Consensus 202 ~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 244 (493)
.....+++||||+|+|... -...+...+..-|.+..+++.|.
T Consensus 107 ~~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 107 VESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 3466789999999987543 23445555555455555555443
No 393
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.75 E-value=0.11 Score=44.58 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=37.3
Q ss_pred CCcceEeeccccccccCCCH--HHHHHHHHhCCcCCceeeeeecccchHHHHHH
Q 011100 204 SRTKFLVLDEADRVLDVGFE--EELRVVFQCLPKNRQTLLFSATMTSDLQTLLE 255 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 255 (493)
..+++||+||+-...+.++- ..+..++...|....+|+..-.+|..+...+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 46799999999988777643 55667777777777777666667766655543
No 394
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.2 Score=51.86 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.2
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
-+|+.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 389999999999987554
No 395
>COG1485 Predicted ATPase [General function prediction only]
Probab=93.53 E-value=0.76 Score=43.65 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=63.5
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
+.+-+.|+.|.|||.. +-+.........+ .-++...-+..+++++..+- |..+.
T Consensus 66 ~GlYl~GgVGrGKT~L--MD~Fy~~lp~~~k----~R~HFh~FM~~vH~~l~~l~-----------g~~dp--------- 119 (367)
T COG1485 66 RGLYLWGGVGRGKTML--MDLFYESLPGERK----RRLHFHRFMARVHQRLHTLQ-----------GQTDP--------- 119 (367)
T ss_pred ceEEEECCCCccHHHH--HHHHHhhCCcccc----ccccHHHHHHHHHHHHHHHc-----------CCCCc---------
Confidence 5588999999999963 3333333222112 23567788888888887763 21111
Q ss_pred CCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC-CcCCceeeeeecccchH
Q 011100 178 RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PKNRQTLLFSATMTSDL 250 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 250 (493)
+ ..+..- ...+.+++++||.| +.|.+-...+..++..+ ..+..++..|-|.|+++
T Consensus 120 ----l----~~iA~~---------~~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 120 ----L----PPIADE---------LAAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ----c----HHHHHH---------HHhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 0 001111 13456789999999 34443333334444332 35788899999988654
No 396
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.51 E-value=0.03 Score=48.07 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=51.2
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
++++.|+.|+|||+. +.-++..+........-.+..+.+ .-+...|+.+..+..+.... .......
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~~~~~v~Gf~t~evr-----------~~g~r~GF~iv~l~~g~~~~--la~~~~~ 66 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKKKGLPVGGFYTEEVR-----------ENGRRIGFDIVDLNSGEEAI--LARVDFR 66 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHHTCGGEEEEEEEEEE-----------TTSSEEEEEEEET-TS-EEE--EEETTSS
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhccCCccceEEeeccc-----------CCCceEEEEEEECcCCCccc--ccccccc
Confidence 478999999999976 455666664432222222322222 11111233333331211000 0000012
Q ss_pred CcEEEECcchHHHHHhcCCC--CCCccCCcceEeeccccccc--cCCCHHHHHHHHH
Q 011100 179 PHVVIATPGRIKVLLEEDPD--IPPVFSRTKFLVLDEADRVL--DVGFEEELRVVFQ 231 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~--~~~~l~~~~~vViDEah~~~--~~~~~~~~~~i~~ 231 (493)
...-++.+.-....+..... +...+...+++|+||+-.|- ..+|...+..++.
T Consensus 67 ~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 67 SGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp -SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred ccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 23334444443344443211 11112466899999999764 3456677777766
No 397
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.27 Score=51.58 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=25.4
Q ss_pred ccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 202 ~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
.+...+++||||+|.|... -...+...+...+....+|+.|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999998543 2334555555544444444433
No 398
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.46 E-value=0.6 Score=51.31 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=63.7
Q ss_pred CeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-CCCCCCCCCCcCeEEE
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-VASRGLDIPTVDLVLN 378 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~v~~Vi~ 378 (493)
.+++|.++|..-|.+.+..+++. ++.+..++|..+..++..+++.+..|+.+|+|+|. .+...+.+.++.+||.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 68999999999999988877653 66788899999999999999999999999999996 5556678888888876
No 399
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.40 E-value=0.38 Score=53.63 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=33.3
Q ss_pred ceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeeccc
Q 011100 207 KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMT 247 (493)
Q Consensus 207 ~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 247 (493)
-+||||++|.+.+......+..++...+.+.++++.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 47999999998666666788888998888888888887744
No 400
>PRK10436 hypothetical protein; Provisional
Probab=93.40 E-value=0.13 Score=51.78 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=25.3
Q ss_pred cHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhc
Q 011100 84 TPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAE 124 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~ 124 (493)
.+.|.+.+..++.. .-++++||||||||.+. ..++..+..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 34455555544433 34889999999999763 445555543
No 401
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.40 E-value=0.082 Score=52.35 Aligned_cols=48 Identities=33% Similarity=0.348 Sum_probs=36.9
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
++++.|+||||||.++++|-+... ...++|+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988876542 345888889989987766555543
No 402
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.40 E-value=0.099 Score=47.69 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.2
Q ss_pred EEEEccCCCCchhH
Q 011100 100 VLGLAQTGSGKTAA 113 (493)
Q Consensus 100 ~lv~a~TGsGKTl~ 113 (493)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 403
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.39 E-value=0.3 Score=45.37 Aligned_cols=117 Identities=18% Similarity=0.112 Sum_probs=57.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 175 (493)
.|.=+++.|.||.|||..++-.+.+.+... +..+++++.--. ..++..++-........ ..+..+.-...+...+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~-~~~l~~R~la~~s~v~~--~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMS-EEELAARLLARLSGVPY--NKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS--HHHHHHHHHHHHHTSTH--HHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCC-HHHHHHHHHHHhhcchh--hhhhccccCHHHHHHH
Confidence 344589999999999977666666655543 356888875311 23333333332222111 1111121111111111
Q ss_pred ------cCCCcEE-EECcc----hHHHHHhcCCCCCCccCCcceEeeccccccccC
Q 011100 176 ------MNRPHVV-IATPG----RIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220 (493)
Q Consensus 176 ------~~~~~Ii-v~Tp~----~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~ 220 (493)
.....++ ..+|. .+...+.... .....+++||||=.|.+...
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~---~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLK---REGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHH---HHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHH---hhccCCCEEEechHHHhcCC
Confidence 1223344 34443 3444433221 11256789999999987763
No 404
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.056 Score=50.11 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
..|+++.||||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 3579999999999998544
No 405
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.32 E-value=0.49 Score=48.77 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=63.9
Q ss_pred CeEEEEecchh----hHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-CCCCCCCCCcCeEEE
Q 011100 305 RSAIIFVSTCR----SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-ASRGLDIPTVDLVLN 378 (493)
Q Consensus 305 ~~~lVf~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidi~~v~~Vi~ 378 (493)
.++....+|-- +.+.+..+|...|+.+..+.|.+....|..+++...+|+++++|.|-+ +...+++.++-.||.
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 312 YQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred CeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 68888999864 445566677778999999999999999999999999999999999975 568899989888886
No 406
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.28 E-value=0.69 Score=49.93 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=16.0
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.++++.||+|+|||...-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5799999999999976544
No 407
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.23 E-value=0.68 Score=44.25 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=27.5
Q ss_pred ccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecc
Q 011100 202 VFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 246 (493)
Q Consensus 202 ~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 246 (493)
.....+++|||+||.|... -...+..++..-| +..++++|..+
T Consensus 121 ~~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 121 LEAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred ccCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECCh
Confidence 3467899999999988543 3345555666545 55555555433
No 408
>PRK06904 replicative DNA helicase; Validated
Probab=93.16 E-value=0.85 Score=46.30 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=56.2
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEE-Ec-CCCHHHHH-
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV-VG-GMDLLTQA- 172 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~-~g-~~~~~~~~- 172 (493)
.|.=+++.|.||.|||..++-.+.+..... +..+++++.- .-..|+..++-..... +....+ .| ..+..+..
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~e~~~ 294 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQDWAK 294 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCCCCHHHHHH
Confidence 344588899999999965433333332222 4456666543 3345555554443322 222111 23 22221111
Q ss_pred -----HHhcCCCcEEEE-----CcchHHHHHhcCCCCCCccCCcceEeeccccccccC
Q 011100 173 -----KSLMNRPHVVIA-----TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220 (493)
Q Consensus 173 -----~~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~ 220 (493)
..+...+++.|- |+..+...+.... .....+++||||=.+.+...
T Consensus 295 ~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~---~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 295 ISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY---RENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH---HhCCCCCEEEEecHHhcCCC
Confidence 122234456663 3333433332210 01125789999999877543
No 409
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.14 E-value=3.8 Score=38.82 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=71.6
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc--cHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP--TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
+++.|..|+|||++..= +.+.+.+. +.++++.+- .|+=|.++.+.+.+. .|..+.....|.+
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er---~gv~vI~~~~G~D---------- 205 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGER---LGVPVISGKEGAD---------- 205 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHHC--CCeEEEEecchHHHHHHHHHHHHHHH---hCCeEEccCCCCC----------
Confidence 78899999999987443 33444433 556666653 466555544444433 3566544322222
Q ss_pred CCcEEEECcch-HHHHHhcCCCCCCccCCcceEeeccccccccC-CCHHHHHHHHHhCCcCC------ceeeeeecccch
Q 011100 178 RPHVVIATPGR-IKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCLPKNR------QTLLFSATMTSD 249 (493)
Q Consensus 178 ~~~Iiv~Tp~~-l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~------~~i~~SAT~~~~ 249 (493)
|.. ..+.+.... -+++++|++|=|-||.+. ..-..++.|.+.+.+.. -++.+-||...+
T Consensus 206 --------pAaVafDAi~~Ak-----ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 206 --------PAAVAFDAIQAAK-----ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred --------cHHHHHHHHHHHH-----HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 111 122333221 246778888888888754 23355666666554333 244447898876
Q ss_pred HHHHHHHh
Q 011100 250 LQTLLELS 257 (493)
Q Consensus 250 ~~~~~~~~ 257 (493)
.....+.+
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 55444443
No 410
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.12 E-value=0.14 Score=52.36 Aligned_cols=50 Identities=36% Similarity=0.411 Sum_probs=38.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
.++++.||||||||..+++|.+... ...++|.=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4699999999999999999976432 2257888899898887776666653
No 411
>PRK13764 ATPase; Provisional
Probab=93.09 E-value=0.2 Score=51.90 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=26.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
.+++++++||||||||... ..++..+... +..++.+--.+++
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~~~--~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYADM--GKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhhC--CCEEEEECCCccc
Confidence 3577999999999999753 4455555432 3334344444454
No 412
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.08 E-value=0.64 Score=46.69 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=31.5
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 79 g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
|+.+-++---+.+.-+..|.-+++.|++|+|||...+-.+.+..... +..+++++
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fS 230 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFS 230 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 34333333333333344456689999999999966554444433222 44577776
No 413
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.07 E-value=0.22 Score=46.30 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
.|.-++|.|++|+|||...+..+.+.+.+ +.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 45669999999999998766666665544 55678877
No 414
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.92 E-value=0.42 Score=50.48 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=15.2
Q ss_pred EEEEccCCCCchhHhHHH
Q 011100 100 VLGLAQTGSGKTAAFALP 117 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~ 117 (493)
+|+.||.|+|||.++-+.
T Consensus 43 YLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 789999999999876544
No 415
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.88 E-value=0.19 Score=48.55 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCCCcHHHHhhhhhhhc-CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 71 AVQTCKELGMRRPTPVQTHCIPKILE-GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 71 l~~~l~~~g~~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
-+..|...|+ +++.+.+.+..+.. +.++++.|+||||||... -.++..+.. ..+++++-.+.||
T Consensus 153 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 153 TLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCC---CCcEEEECCccee
Confidence 3445555565 45677777766554 578999999999999643 333333332 4456777777676
No 416
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.82 E-value=0.3 Score=47.47 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=26.4
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
+..++++||||||||... ..++..+... .+.+++.+-...++
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~-~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN-AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC-CCCEEEEEcCChhh
Confidence 456899999999999764 3344444432 23456666554444
No 417
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=0.84 Score=44.88 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
+.+++.||.|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999966443
No 418
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.80 E-value=0.18 Score=52.40 Aligned_cols=56 Identities=23% Similarity=0.091 Sum_probs=43.1
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEE
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 162 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 162 (493)
.++++.||||||||..+++|-+..+ +..++|+=|--++........++. |.+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 4689999999999999999988764 234888889999988777666654 4455444
No 419
>PRK04328 hypothetical protein; Provisional
Probab=92.72 E-value=0.18 Score=46.61 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=35.5
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|..+++.|++|+|||...+..+...+.+ +..++++. +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 35669999999999997766666666555 55677776 333445566666555
No 420
>PHA00350 putative assembly protein
Probab=92.61 E-value=0.65 Score=45.49 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=18.6
Q ss_pred EEEEccCCCCchhHhHH-HHHHHhhc
Q 011100 100 VLGLAQTGSGKTAAFAL-PILHRLAE 124 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l-~~l~~l~~ 124 (493)
.++.|..|||||+.++- -++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57899999999987775 35555554
No 421
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.59 E-value=0.62 Score=45.75 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHcCCCC--CcHHHH-----hhhhhhhcCCcEEEEccCCCCchhHhHHHHHH
Q 011100 67 LAEWAVQTCKELGMRR--PTPVQT-----HCIPKILEGKDVLGLAQTGSGKTAAFALPILH 120 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~--~~~~Q~-----~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~ 120 (493)
..+|+-=-|.+.|+.. ++.-|+ ..++.+..+.|++..||+|+|||..|......
T Consensus 172 ~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 172 LEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 3456555666777762 222111 12255667789999999999999666543333
No 422
>PHA00729 NTP-binding motif containing protein
Probab=92.56 E-value=0.67 Score=41.60 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999996543
No 423
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.55 E-value=0.1 Score=48.89 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=30.2
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 95 LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
..+.+++++|+||||||... -.++..+... ..+++++-.+.++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 45678999999999999764 4455655553 3567777776665
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.54 E-value=0.22 Score=43.63 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=25.3
Q ss_pred CcHHHHhhhhhhh-cCCcEEEEccCCCCchhHh
Q 011100 83 PTPVQTHCIPKIL-EGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 83 ~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKTl~~ 114 (493)
+++-|.+.+.... .+..+++.||||||||..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 5677777777644 5678999999999999753
No 425
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.45 E-value=0.25 Score=45.95 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=34.7
Q ss_pred HHHcCCCCCcHHHHhhhhhhhc-C-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 75 CKELGMRRPTPVQTHCIPKILE-G-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 75 l~~~g~~~~~~~Q~~~i~~i~~-~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
|.++|+ .+.|.+.+..++. . ..+++.|+||||||... ..++..+.. ...+++.+-...+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~--~~~~iitiEdp~E 119 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT--PEKNIITVEDPVE 119 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC--CCCeEEEECCCce
Confidence 444553 4556666655544 2 34899999999999753 334455543 1334555544444
No 426
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.40 E-value=0.12 Score=53.63 Aligned_cols=63 Identities=21% Similarity=0.420 Sum_probs=51.2
Q ss_pred HHHhhcCCCeEEEEcCCCCCCCCCCCcCeE--------EEecCCCCCCcceeeccccccCCCC-ccEEEEEe
Q 011100 347 LHRFKSGQATILLATDVASRGLDIPTVDLV--------LNYDIPRYPRDYVHRVGRTARAGRG-GLAVSFVT 409 (493)
Q Consensus 347 ~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V--------i~~~~p~s~~~y~qr~GR~gR~g~~-g~~~~~~~ 409 (493)
-++|..|+-.|-|-+.+++-||-+..-+.| |...+|||.+.-+|..||++|.++. +--++|+.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 357999999999999999999999754433 5589999999999999999998863 44455554
No 427
>PF12846 AAA_10: AAA-like domain
Probab=92.36 E-value=0.19 Score=47.81 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
++++++.|+||||||......+.+.+.. +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~---g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR---GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc---CCCEEEEcCCchHHH
Confidence 3579999999999998766444444444 556777767655443
No 428
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.12 Score=43.07 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=61.2
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcC
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMN 177 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (493)
..+++.|++|+|||.. ++-+...+...+.. ..=+++|- .+.-+...|+++..+..|....- . ..+
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g~k-vgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l--a-~~~ 70 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKGYK-VGGFITPE----------VREGGKRIGFKIVDLATGEEGIL--A-RVG 70 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcCce-eeeEEeee----------eecCCeEeeeEEEEccCCceEEE--E-EcC
Confidence 3589999999999965 55666677665322 22355552 22334445666666653321100 0 001
Q ss_pred CCcEEEECcchHHHHHhcCC--CCCCccCCcceEeeccccccc--cCCCHHHHHHHHHh
Q 011100 178 RPHVVIATPGRIKVLLEEDP--DIPPVFSRTKFLVLDEADRVL--DVGFEEELRVVFQC 232 (493)
Q Consensus 178 ~~~Iiv~Tp~~l~~~l~~~~--~~~~~l~~~~~vViDEah~~~--~~~~~~~~~~i~~~ 232 (493)
....-|+-++...+.++.-. .+...+..-+++||||+--|- ...|...++.++..
T Consensus 71 ~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 71 FSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred CCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 11222233332222222100 001113345799999999764 44577777777654
No 429
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.25 E-value=0.23 Score=50.53 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=26.3
Q ss_pred cHHHHhhhhhhhcCCc--EEEEccCCCCchhHhHHHHHHHhh
Q 011100 84 TPVQTHCIPKILEGKD--VLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~--~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
.+-|.+.+..+..... ++++||||||||... ..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 5566666666655433 789999999999763 33455554
No 430
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.16 E-value=0.04 Score=62.15 Aligned_cols=94 Identities=32% Similarity=0.525 Sum_probs=76.3
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC-ceeeccCCCCH-----------HHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc
Q 011100 306 SAIIFVSTCRSCHLLSLLLEELDQ-EAVALHSFKSQ-----------SQRLSALHRFKSGQATILLATDVASRGLDIPTV 373 (493)
Q Consensus 306 ~~lVf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~-----------~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 373 (493)
..++||+....+..+.+.++.... .+..+.|.+.+ ..+..++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 469999999999999998887632 23333333321 235678889999999999999999999999999
Q ss_pred CeEEEecCCCCCCcceeeccccccCC
Q 011100 374 DLVLNYDIPRYPRDYVHRVGRTARAG 399 (493)
Q Consensus 374 ~~Vi~~~~p~s~~~y~qr~GR~gR~g 399 (493)
+.|+.++.|.....|+|..||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999986653
No 431
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.12 E-value=0.15 Score=46.29 Aligned_cols=53 Identities=28% Similarity=0.273 Sum_probs=34.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|..+++.|++|+|||+..+-.+...+.+. +.++++++-. +-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEec-CCHHHHHHHHHHc
Confidence 356799999999999987776666666651 2357777743 3345666666655
No 432
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.54 Score=48.77 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=55.4
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
|.-+++.||+|.|||- |+..+++.+.+-+ +-...||.....+ +.
T Consensus 350 GpILcLVGPPGVGKTS---------------------------LgkSIA~al~Rkf------vR~sLGGvrDEAE---IR 393 (782)
T COG0466 350 GPILCLVGPPGVGKTS---------------------------LGKSIAKALGRKF------VRISLGGVRDEAE---IR 393 (782)
T ss_pred CcEEEEECCCCCCchh---------------------------HHHHHHHHhCCCE------EEEecCccccHHH---hc
Confidence 4558889999999993 3344444332221 2334455543222 22
Q ss_pred CCCcEEE-ECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC
Q 011100 177 NRPHVVI-ATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL 233 (493)
Q Consensus 177 ~~~~Iiv-~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 233 (493)
+.-.-.| +-||++..-+....... -++++||+|.|.....+.--..++..+
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~N------Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKN------PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcC------CeEEeechhhccCCCCCChHHHHHhhc
Confidence 2223333 57999988877653311 269999999998765554444444444
No 433
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.00 E-value=0.24 Score=51.53 Aligned_cols=45 Identities=31% Similarity=0.377 Sum_probs=29.0
Q ss_pred HHHcCCCCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhh
Q 011100 75 CKELGMRRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 75 l~~~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
|..+|+ .+-|.+.+..++.. .-++++||||||||.+. ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 344554 45566666655543 34789999999999763 44555554
No 434
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.87 E-value=1.1 Score=45.19 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=45.7
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEEC
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIAT 185 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~T 185 (493)
.+.++||.|-|+--|.++...+... ++++..++|+.+..++...+ .+.+.|+|+|
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT 398 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT 398 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEc
Confidence 3568999999999999888888775 47899999999887776555 4578999999
No 435
>PRK08506 replicative DNA helicase; Provisional
Probab=91.79 E-value=1.1 Score=45.58 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=31.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
.|.-+++.|.||.|||...+-.+.+.+.. +..+++++.- .-..|+..++..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlE-Ms~~ql~~Rlla 241 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLE-MPAEQLMLRMLS 241 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCc-CCHHHHHHHHHH
Confidence 34558889999999996655555544332 4557766542 334555555543
No 436
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.77 E-value=1.3 Score=50.02 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=62.6
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-CCCCCCCCCCcCeEEE
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-VASRGLDIPTVDLVLN 378 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~v~~Vi~ 378 (493)
..+++|.++|+.-|.+.+..+++. ++.+..+++..+..++..++..+.+|..+|+|+|. .+...+++.++.++|.
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 368999999999999988877753 45777899999999999999999999999999996 4555667778888775
No 437
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.73 E-value=0.72 Score=46.57 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=16.4
Q ss_pred CcEEEEccCCCCchhHhHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~ 118 (493)
+.+|+.||.|+|||.++...+
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 348899999999998755543
No 438
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.72 E-value=0.36 Score=46.09 Aligned_cols=57 Identities=25% Similarity=0.191 Sum_probs=39.4
Q ss_pred CCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 80 MRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
+..+++.|..-+-. +..+++++++|+||||||.. +.+++..+.. ..+++.+--|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~---~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP---EERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc---hhcEEEEeccccc
Confidence 33467777666654 44578999999999999964 5555555544 4567777777665
No 439
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.65 E-value=1.2 Score=48.29 Aligned_cols=52 Identities=29% Similarity=0.354 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhH
Q 011100 59 TVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~ 113 (493)
..+|++++-.....+.+..+ .+..+.-++.-. +..++.+++.||+|+|||+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 45677776555555544332 222222222211 22356799999999999965
No 440
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.54 E-value=0.73 Score=46.93 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.7
Q ss_pred EEEEccCCCCchhHhHHH
Q 011100 100 VLGLAQTGSGKTAAFALP 117 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~ 117 (493)
+++.||.|+|||.++.+.
T Consensus 41 yLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 41 YIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999775543
No 441
>PRK08840 replicative DNA helicase; Provisional
Probab=91.51 E-value=1.7 Score=44.02 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=36.6
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 011100 79 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKA 150 (493)
Q Consensus 79 g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 150 (493)
|+.+-++.--..+.-+..|.-+++.|.||.|||..++-.+.+..... +..++|...- .-..|+..++-.
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlE-Ms~~ql~~Rlla 267 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLE-MPAEQLMMRMLA 267 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEecc-CCHHHHHHHHHH
Confidence 34444333334443344455588899999999965543333333222 4456666542 224455544433
No 442
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.46 E-value=1.2 Score=45.53 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=79.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhcc-CCCceEEEEEcCCCHHHHHHHhc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS-GLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
+-.+..-|--.|||+. +.|++..++..-.+.++.|++.-+.-++-+++++...+. .++-+...- .
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~-------------~ 268 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIE-------------N 268 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceee-------------e
Confidence 4577888999999975 777888777766688999999999888877776653321 112111100 0
Q ss_pred CCCcEEEECcchHHH-H-HhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC-cCCceeeeeeccc
Q 011100 177 NRPHVVIATPGRIKV-L-LEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFSATMT 247 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~-~-l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~ 247 (493)
.+..|.+.-|+.=.. + ..........=+++++++|||||-+. ...+..++..+. ++..+|+.|.|-.
T Consensus 269 k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 269 KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCC
Confidence 122455555543111 0 11111112334678999999999653 244555555443 5677888887743
No 443
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.42 E-value=0.68 Score=39.67 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=63.1
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCC
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRP 179 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 179 (493)
+.|--..|=|||.+++-.++..+.. +.+|+|+-=.+. .....+...+...-++.+. ..+.......... ..
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~--~~g~~f~~~~~~~--~~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKG--GRYSGELKALKKLPNVEIE--RFGKGFVWRMNEE--EE 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS----SS--HHHHHHGGGT--EEE--E--TT----GGGH--HH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecC--CCCcCHHHHHHhCCeEEEE--EcCCcccccCCCc--HH
Confidence 4555668999999988888888777 778888865443 0111222222211122222 1111110000000 00
Q ss_pred cEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH--HHHHHHHHhCCcCCceeeeeecccchHHHHH
Q 011100 180 HVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE--EELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 180 ~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 254 (493)
+ .......+..... ...-..+++||+||+-...+.++. ..+..++...|....+|+.--.+|+.+...+
T Consensus 77 ~-----~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 77 D-----RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H-----HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H-----HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 0 0111111111100 111246789999999988887754 5566677776667767765556666665554
No 444
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.44 Score=46.79 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=28.3
Q ss_pred CcceEeeccccccccCC--------CHHHHHHHHHh----CCcCCceeeeeecc-cchHHHHH
Q 011100 205 RTKFLVLDEADRVLDVG--------FEEELRVVFQC----LPKNRQTLLFSATM-TSDLQTLL 254 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~--------~~~~~~~i~~~----~~~~~~~i~~SAT~-~~~~~~~~ 254 (493)
...+++|||+|.++..- .....+.++.. ...+-+++++.||- |..+....
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~ 307 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAA 307 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHH
Confidence 45678899999876421 12222333322 22455889999994 44444443
No 445
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.35 E-value=0.94 Score=45.73 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=34.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|.-+++.|++|+|||...+..+...... +.+++|+..- +-..|+...+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHc
Confidence 34668999999999997655544443332 4468888764 3356666655554
No 446
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.32 E-value=0.38 Score=43.57 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.3
Q ss_pred EEEEccCCCCchhHh
Q 011100 100 VLGLAQTGSGKTAAF 114 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~ 114 (493)
++++|+|||||+...
T Consensus 130 viiVGaTGSGKSTtm 144 (375)
T COG5008 130 VIIVGATGSGKSTTM 144 (375)
T ss_pred EEEECCCCCCchhhH
Confidence 888999999999763
No 447
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.28 E-value=1.4 Score=48.51 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.+.++.||+|+|||...-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5799999999999976543
No 448
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.25 E-value=0.72 Score=44.93 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=21.4
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhc
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAE 124 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~ 124 (493)
+-.|+..++.||.|+|||.... -++..+..
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK-~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQ-NIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHHHH-HHHHHHHh
Confidence 3367889999999999996433 35555544
No 449
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.23 E-value=0.76 Score=49.72 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=31.3
Q ss_pred ccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|++++-.+.+.+.|... .+..+..++... +...+.+++.||+|+|||+.+-
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHHH
Confidence 45677777767776666542 222222222111 1223569999999999997543
No 450
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=1.5 Score=45.69 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=31.4
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeec
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSAT 245 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 245 (493)
+.+..++|+|||-.-+|..-...+...+..+..+ ++++.=|-
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 4667899999999988887777788877776655 55555553
No 451
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.18 E-value=0.33 Score=46.38 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999996533
No 452
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.01 E-value=0.36 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=17.7
Q ss_pred CCccCCcceEeeccccccccCCCH
Q 011100 200 PPVFSRTKFLVLDEADRVLDVGFE 223 (493)
Q Consensus 200 ~~~l~~~~~vViDEah~~~~~~~~ 223 (493)
...-.++++.||||+|++....|.
T Consensus 114 ~P~~~ryKVyiIDEvHMLS~~afN 137 (515)
T COG2812 114 APSEGRYKVYIIDEVHMLSKQAFN 137 (515)
T ss_pred CCccccceEEEEecHHhhhHHHHH
Confidence 344578899999999987654443
No 453
>CHL00176 ftsH cell division protein; Validated
Probab=91.00 E-value=0.85 Score=48.03 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
+.+++.||+|+|||+.+-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997543
No 454
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.98 E-value=0.37 Score=44.22 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.++++.||+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 359999999999997543
No 455
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.98 E-value=0.33 Score=47.96 Aligned_cols=49 Identities=33% Similarity=0.483 Sum_probs=32.6
Q ss_pred hhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 92 ~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
+.-...+++++.|.||||||.+ +..++..+... +.+++|.=|.-+....
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~--g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQA-IRHLLDQIRAR--GDRAIIYDPKGEFTER 58 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT--T-EEEEEEETTHHHHH
T ss_pred ccchhhCcEEEECCCCCCHHHH-HHHHHHHHHHc--CCEEEEEECCchHHHH
Confidence 3445668899999999999974 55666666554 5578888888776543
No 456
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.94 E-value=1.2 Score=48.46 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+..+++.||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999996533
No 457
>PRK08006 replicative DNA helicase; Provisional
Probab=90.93 E-value=2.3 Score=43.20 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=55.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEE-EcCCCHHHHHH-
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV-VGGMDLLTQAK- 173 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~- 173 (493)
.|.-+++.|.+|.|||..++-.+.+..... +..++|...- .-..|+..++-..... +....+ .|..+..++..
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~e~~~~ 297 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRTGQLDDEDWARI 297 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHHHHH
Confidence 345588899999999965444444433222 4456666532 2234444444333222 222112 23222222111
Q ss_pred -----HhcCCCcEEEE-----CcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 174 -----SLMNRPHVVIA-----TPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 174 -----~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
.+.....+.|- |+..+...+.... .....+++||||=.|.+.
T Consensus 298 ~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~---~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 298 SGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF---REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH---HhcCCCCEEEEccHHHcc
Confidence 12134455554 2333333332210 011257899999999775
No 458
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.62 Score=43.57 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhc---CCCCeEEEEEcccHHH-----------HHHHHHHHHHhccCCCceEEEE
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAE---DPYGVLALVITPTREL-----------AYQLAEQFKALGSGLHLRCEVV 162 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~---~~~~~~~lil~Pt~~L-----------~~q~~~~~~~~~~~~~~~~~~~ 162 (493)
+|-+++.||+|+|||.- .-.+.+.+.- +......+|=.....| +.++++.+.++...-|.-+.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35588999999999942 2334444421 2222334555555544 4455555666665555555555
Q ss_pred Ec
Q 011100 163 VG 164 (493)
Q Consensus 163 ~g 164 (493)
..
T Consensus 256 ID 257 (423)
T KOG0744|consen 256 ID 257 (423)
T ss_pred eH
Confidence 54
No 459
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.88 E-value=0.38 Score=50.72 Aligned_cols=49 Identities=22% Similarity=0.187 Sum_probs=37.7
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.++++.||||||||..+++|-+..+ ...++|+=|--++........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-----~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-----KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-----CCCEEEEeCCchHHHHHHHHHHhC
Confidence 4799999999999999999986653 235788889888877665555443
No 460
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.85 E-value=0.38 Score=44.72 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=37.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
.|+.++|.|++|||||+..+-.+...+.. +.++++++-. +...++.+.+..++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~-e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTE-ESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEec-CCHHHHHHHHHHcC
Confidence 56789999999999997766666665555 5567777653 45566666666653
No 461
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.85 E-value=4.5 Score=41.92 Aligned_cols=141 Identities=19% Similarity=0.202 Sum_probs=76.0
Q ss_pred cHHHHhhhhhhhcC-------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 84 TPVQTHCIPKILEG-------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~-------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
|--|..|+-.+++. --+-+.|.-|-||+.+.-+.+..++.-+ -..+.|..|.-+=..-+++.+-+=+..++
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G--ysnIyvtSPspeNlkTlFeFv~kGfDaL~ 332 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG--YSNIYVTSPSPENLKTLFEFVFKGFDALE 332 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC--cceEEEcCCChHHHHHHHHHHHcchhhhc
Confidence 55677776554432 2377789999999999888888877763 23466777887665555544333222222
Q ss_pred ceE----EEEEcCCCHHHHHHHh-------cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHH
Q 011100 157 LRC----EVVVGGMDLLTQAKSL-------MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225 (493)
Q Consensus 157 ~~~----~~~~g~~~~~~~~~~~-------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~ 225 (493)
..- .++....... ...+ ...-.|-+..|.- ...+...+++|||||-.+ -.+.
T Consensus 333 Yqeh~Dy~iI~s~np~f--kkaivRInifr~hrQtIQYi~P~D-----------~~kl~q~eLlVIDEAAAI----PLpl 395 (1011)
T KOG2036|consen 333 YQEHVDYDIIQSTNPDF--KKAIVRINIFREHRQTIQYISPHD-----------HQKLGQAELLVIDEAAAI----PLPL 395 (1011)
T ss_pred chhhcchhhhhhcChhh--hhhEEEEEEeccccceeEeeccch-----------hhhccCCcEEEechhhcC----CHHH
Confidence 110 0000000000 0000 0011222333211 223567789999999865 3344
Q ss_pred HHHHHHhCCcCCceeeeeecccc
Q 011100 226 LRVVFQCLPKNRQTLLFSATMTS 248 (493)
Q Consensus 226 ~~~i~~~~~~~~~~i~~SAT~~~ 248 (493)
+..++ .+.+++|+.|+..
T Consensus 396 vk~Li-----gPylVfmaSTinG 413 (1011)
T KOG2036|consen 396 VKKLI-----GPYLVFMASTING 413 (1011)
T ss_pred HHHhh-----cceeEEEeecccc
Confidence 44443 5568999999863
No 462
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.78 E-value=1.7 Score=45.38 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCc
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPV 202 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 202 (493)
.+.++||.|+++..+.++++.+... ++.+..++|+....++...+ .+..+|+|+| +.+..+ .+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG----ID 322 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG----LH 322 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC----CC
Confidence 3667999999999999999888765 68899999998766554433 3578999999 344443 34
Q ss_pred cCCcceEeecc
Q 011100 203 FSRTKFLVLDE 213 (493)
Q Consensus 203 l~~~~~vViDE 213 (493)
+.++++||.-+
T Consensus 323 ip~V~~VInyd 333 (572)
T PRK04537 323 IDGVKYVYNYD 333 (572)
T ss_pred ccCCCEEEEcC
Confidence 67778877543
No 463
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.76 E-value=0.44 Score=43.16 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcC---CCCeEEEEEccc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAED---PYGVLALVITPT 137 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~---~~~~~~lil~Pt 137 (493)
|.-+.+.|++|+|||...+..+...+... .....++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 46689999999999976665554443331 012567777754
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.75 E-value=0.37 Score=42.71 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
++++||||||||... ..++..+.... +..++.+.-..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcCCcc
Confidence 789999999999764 33455544322 335555554434
No 465
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.74 E-value=1.9 Score=47.47 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.++++.||+|+|||...-.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999976543
No 466
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.72 E-value=0.38 Score=44.80 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=21.7
Q ss_pred hhhhhhhcCCcEEEEccCCCCchhHhHH
Q 011100 89 HCIPKILEGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 89 ~~i~~i~~~~~~lv~a~TGsGKTl~~~l 116 (493)
+++..+..++++++.||+|+|||..+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3444566788999999999999976543
No 467
>PRK07004 replicative DNA helicase; Provisional
Probab=90.68 E-value=1.5 Score=44.50 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=24.6
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+..|.-+++.|.+|+|||..++-.+.+..... +..+++++
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~--~~~v~~fS 249 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY--GLPVAVFS 249 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHc--CCeEEEEe
Confidence 33445588899999999965544443333222 44566665
No 468
>PRK14701 reverse gyrase; Provisional
Probab=90.65 E-value=1.7 Score=50.84 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=52.5
Q ss_pred CeEEEEecchhhHHHHHHHHHhc------CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL------DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 363 (493)
.++||.++++.-+.++...++.+ +..+..+||+++..++...++.+.+|+.+|||+|.-
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 58999999999999998888873 456788999999999999999999999999999974
No 469
>PRK09087 hypothetical protein; Validated
Probab=90.65 E-value=0.59 Score=42.38 Aligned_cols=17 Identities=35% Similarity=0.260 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCchhHh
Q 011100 98 KDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~ 114 (493)
+-+++.||+|||||...
T Consensus 45 ~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44899999999999743
No 470
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.50 E-value=8 Score=37.20 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=12.2
Q ss_pred EEEEccCCCCchhH
Q 011100 100 VLGLAQTGSGKTAA 113 (493)
Q Consensus 100 ~lv~a~TGsGKTl~ 113 (493)
+-+.|+.|+|||..
T Consensus 59 igi~G~~GaGKSTl 72 (332)
T PRK09435 59 IGITGVPGVGKSTF 72 (332)
T ss_pred EEEECCCCCCHHHH
Confidence 77799999999964
No 471
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.48 E-value=0.24 Score=47.26 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=16.9
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+..+.++++.|+||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34578899999999999975
No 472
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=90.43 E-value=0.58 Score=49.23 Aligned_cols=53 Identities=30% Similarity=0.401 Sum_probs=37.5
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH--HHHHHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE--LAYQLAEQFKALG 152 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~ 152 (493)
..+++|.|+||+|||..+...+.+.+.. +..++++=|-.. |...+...++..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 3679999999999998876666666654 445777777654 6666666665554
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.30 E-value=1.5 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.9
Q ss_pred CcEEEEccCCCCchhHhHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~ 118 (493)
+++++.||+|+|||..+...+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 579999999999997755433
No 474
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.28 E-value=0.37 Score=43.07 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=27.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
.|.-+.+.|++|+|||...+..+.+.... +.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 34668999999999998766655555443 4567777654
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.26 E-value=0.4 Score=48.98 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=38.6
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
|..+++.||+|+|||+..+..+...+.+ +.+++|++ ..+-..|+.+.+..++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN---KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 4569999999999998777666665554 56788877 3455677777777763
No 476
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=90.20 E-value=1.6 Score=43.52 Aligned_cols=86 Identities=10% Similarity=0.132 Sum_probs=59.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
.+.++|.+.++.-|.-++..|.+. |++|..++|+....+....+ .+..+|+|||.- .-+ ...+
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv-----AgR----GIDI 583 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV-----AGR----GIDI 583 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc-----ccc----CCCC
Confidence 567999999998888777777776 79999999999887665544 346899999931 111 3445
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCC
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLP 234 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~ 234 (493)
.++++|| +.++...+....+++.
T Consensus 584 pnVSlVi--------nydmaksieDYtHRIG 606 (673)
T KOG0333|consen 584 PNVSLVI--------NYDMAKSIEDYTHRIG 606 (673)
T ss_pred Cccceee--------ecchhhhHHHHHHHhc
Confidence 6666554 4445555555555543
No 477
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.17 E-value=0.54 Score=42.56 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=35.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|.-+++.|++|+|||...+..+...+.+ +..++++.-.. -..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC-CHHHHHHHHHHc
Confidence 35668999999999997655555555554 55677776543 456666666665
No 478
>PRK05748 replicative DNA helicase; Provisional
Probab=90.15 E-value=1.8 Score=43.84 Aligned_cols=52 Identities=13% Similarity=-0.033 Sum_probs=30.4
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 011100 95 LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
..|.-++|.|+||.|||...+-.+.+..... +..+++++.- .-..|+..++.
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSlE-ms~~~l~~R~l 252 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSLE-MGAESLVMRML 252 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeCC-CCHHHHHHHHH
Confidence 3345589999999999965554444433232 4456666532 33445555553
No 479
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=90.10 E-value=0.48 Score=42.24 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
...+++|.|.||||||.+....+...+.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 4458999999999999775554444444
No 480
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=90.10 E-value=0.84 Score=48.82 Aligned_cols=70 Identities=27% Similarity=0.225 Sum_probs=55.8
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-CCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-YGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
.+++-|.+++... ...++|.|..|||||.+..--+.+.+.... ....++.++=|+-.|.++.+++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999776 445889999999999998887777776632 233588888888889999999888875
No 481
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.04 E-value=0.16 Score=44.00 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=27.9
Q ss_pred HHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC
Q 011100 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220 (493)
Q Consensus 173 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~ 220 (493)
+.....++|||+++..|.+-...... ......-.+|||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~-~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSL-FGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHH-CT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhh-ccccccCcEEEEecccchHHH
Confidence 34456789999999876553322110 011123468999999988654
No 482
>PRK13695 putative NTPase; Provisional
Probab=89.86 E-value=2 Score=37.05 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=17.2
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhh
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
.+++.|+.|+|||..+.. ++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~-i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK-IAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHH
Confidence 478999999999976553 344443
No 483
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.86 E-value=0.68 Score=42.56 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=20.5
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhh
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
+-.|+.+++.||.|+|||.. +--+++.+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~ 41 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAIT 41 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhccc
Confidence 45688899999999999964 233444433
No 484
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.82 E-value=1.4 Score=44.40 Aligned_cols=53 Identities=19% Similarity=0.042 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|.-+++.|++|+|||...+-.+.+..... +..+++++.- .-..|+..++...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlE-m~~~~i~~R~~~~ 246 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLE-MSAEQLAMRMLSS 246 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCc-CCHHHHHHHHHHH
Confidence 345588999999999966554444433322 4457776632 2234444444443
No 485
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.82 E-value=0.56 Score=42.80 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=64.0
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCC----CeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccc--cccCCCC
Q 011100 328 DQEAVALHSFKSQSQRLSALHRFKSGQ----ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGR--TARAGRG 401 (493)
Q Consensus 328 ~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR--~gR~g~~ 401 (493)
++.+..++++.+... -.|..+. ..|+|.-+.++||+.++++.+.....-+...+++.||. | .-|.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qmg-RwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMG-RWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHh-hcccCCcccc
Confidence 466666776554432 2344333 78999999999999999999999998888888888874 4 3456667
Q ss_pred ccEEEEEecccHHHHHHHHH
Q 011100 402 GLAVSFVTQNDVDLIHEIEA 421 (493)
Q Consensus 402 g~~~~~~~~~~~~~~~~~~~ 421 (493)
+.|-++.+++-...+..+.+
T Consensus 184 dl~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred cceEEecCHHHHHHHHHHHH
Confidence 78888888776666666554
No 486
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.77 E-value=0.32 Score=48.60 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=34.0
Q ss_pred hhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 011100 91 IPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQ 143 (493)
Q Consensus 91 i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 143 (493)
++.-...+++++.|+||||||.. +..++..+... +.+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~--~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR--GDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc--CCCEEEEeCCcchhHh
Confidence 34444568899999999999976 33344444433 4568888888776543
No 487
>PHA00012 I assembly protein
Probab=89.77 E-value=8.1 Score=36.68 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.3
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhc
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAE 124 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~ 124 (493)
.++.|..|||||+.++.-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999988877777766
No 488
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.76 E-value=0.25 Score=42.90 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=26.9
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCc-CCceeeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPK-NRQTLLFSA 244 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~-~~~~i~~SA 244 (493)
.+.+++++||...-++......+...+..+.. +.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45678999999988887666666555555432 355555443
No 489
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=89.74 E-value=0.59 Score=52.96 Aligned_cols=56 Identities=32% Similarity=0.313 Sum_probs=46.2
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcC--CCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAED--PYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.+.+++|.|..|||||.+...-++..+... -.-..+|+|+-|+.-+..+..++...
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 457899999999999999888888888874 24567999999999888888776543
No 490
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=89.74 E-value=0.35 Score=44.86 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=25.1
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
.+|-|||||||+-- +--++..-+-.+....+++|+|++..
T Consensus 90 ~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCC
Confidence 67889999999942 22222221223445679999998743
No 491
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=89.72 E-value=0.46 Score=43.11 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=23.6
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.++|.|++|||||.. ++-++..+...- ..+++++|
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhcccC--CEEEEEec
Confidence 589999999999954 555555544422 34666667
No 492
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.68 E-value=2.2 Score=37.76 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHHhhhhc---CCCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-
Q 011100 292 LMHVLSKMEDM---GIRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV- 363 (493)
Q Consensus 292 l~~~~~~~~~~---~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~- 363 (493)
+..++..+... ...++||.+++...+...+..+... ++.+..++|+.+..+...... +...|+|+|.-
T Consensus 54 ~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~ 129 (203)
T cd00268 54 LIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGR 129 (203)
T ss_pred HHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHH
Confidence 45555555543 3468999999999998887776655 667788899888766543332 67789999952
Q ss_pred ----C-CCCCCCCCcCeEEEec
Q 011100 364 ----A-SRGLDIPTVDLVLNYD 380 (493)
Q Consensus 364 ----~-~~Gidi~~v~~Vi~~~ 380 (493)
+ ..-.++++++++|.-+
T Consensus 130 l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 130 LLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred HHHHHHcCCCChhhCCEEEEeC
Confidence 2 2225667777777533
No 493
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.60 E-value=2.2 Score=47.10 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=63.4
Q ss_pred CeEEEEecchhhHHHHHHHHH----hcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEc-CCCCCCCCCCCcCeEEE
Q 011100 305 RSAIIFVSTCRSCHLLSLLLE----ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT-DVASRGLDIPTVDLVLN 378 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~v~~Vi~ 378 (493)
+++.|.++|.=-|++-.+.++ .+++++..+..-.+..+...+++..++|+++|+|.| ..++.+|-+.++-.+|.
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 789999999877766555554 457888999999999999999999999999999999 47888899989888875
No 494
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.45 E-value=0.8 Score=52.24 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
.++++|.|+.|||||.+...-++..+........+++|+-|+.-+.++.+++....
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 46799999999999998887777777665445689999999999998887766543
No 495
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.44 E-value=2.4 Score=39.44 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCchhH
Q 011100 98 KDVLGLAQTGSGKTAA 113 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~ 113 (493)
+++++.||+|+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 5789999999999974
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.43 E-value=0.27 Score=34.05 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhHh
Q 011100 97 GKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~ 114 (493)
|...++.|++|||||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456999999999999753
No 497
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.33 E-value=2.5 Score=46.43 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=21.1
Q ss_pred HHhhhhhhhc------CCcEEEEccCCCCchhHhHH
Q 011100 87 QTHCIPKILE------GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 87 Q~~~i~~i~~------~~~~lv~a~TGsGKTl~~~l 116 (493)
|..-+..+.. ..+.++.||.|+|||...-.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 5555555442 25799999999999976443
No 498
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=89.16 E-value=2.2 Score=40.88 Aligned_cols=40 Identities=10% Similarity=0.234 Sum_probs=24.3
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++|||++|.|.... ...+...+..-|.+..+++.|
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 4677899999999875432 334444455444445445444
No 499
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.16 E-value=0.92 Score=39.84 Aligned_cols=63 Identities=25% Similarity=0.194 Sum_probs=37.7
Q ss_pred hhhhhh-cCCcEEEEccCCCCchhHhHHHHHHHhhcC-------CCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 90 CIPKIL-EGKDVLGLAQTGSGKTAAFALPILHRLAED-------PYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 90 ~i~~i~-~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
+++-++ .|.-+++.|++|+|||...+-.+...+... ..+.+++++..-.. ..++.+.+..+..
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 333344 566699999999999977555555444311 13557888876544 5677778877654
No 500
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.15 E-value=1.4 Score=50.01 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCce---eeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEA---VALHSFKSQSQRLSALHRFKSGQATILLATDV 363 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~---~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 363 (493)
..+++|.++|+.-+.+++..++.. ++.+ ..+||+++..++...++.+.+|..+|||+|..
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 368999999999999998887765 3332 35899999999999999999999999999973
Done!