Query 011100
Match_columns 493
No_of_seqs 354 out of 3481
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 9E-64 3.1E-68 501.2 38.9 365 57-428 53-425 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.9E-61 1E-65 481.6 35.9 372 58-435 35-407 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 4.2E-60 1.4E-64 474.3 35.1 366 58-428 13-400 (417)
4 3eiq_A Eukaryotic initiation f 100.0 3.8E-60 1.3E-64 474.2 34.4 375 57-437 37-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 7.2E-59 2.5E-63 462.8 36.8 369 59-434 20-388 (400)
6 1xti_A Probable ATP-dependent 100.0 3.5E-57 1.2E-61 449.3 37.8 367 60-432 8-379 (391)
7 3fht_A ATP-dependent RNA helic 100.0 5E-57 1.7E-61 451.3 36.3 374 57-438 22-407 (412)
8 1fuu_A Yeast initiation factor 100.0 4.4E-59 1.5E-63 463.4 20.6 372 56-434 17-389 (394)
9 1hv8_A Putative ATP-dependent 100.0 2.7E-56 9.3E-61 438.9 36.7 360 59-431 5-365 (367)
10 3pey_A ATP-dependent RNA helic 100.0 3.4E-56 1.2E-60 442.6 35.9 364 59-432 4-379 (395)
11 3sqw_A ATP-dependent RNA helic 100.0 2.2E-56 7.4E-61 464.2 34.0 362 67-430 28-417 (579)
12 3fmp_B ATP-dependent RNA helic 100.0 6.1E-58 2.1E-62 466.1 19.7 371 58-436 90-472 (479)
13 3i5x_A ATP-dependent RNA helic 100.0 7.8E-56 2.7E-60 459.9 34.3 362 67-430 79-468 (563)
14 2z0m_A 337AA long hypothetical 100.0 5E-54 1.7E-58 417.7 31.6 335 67-424 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 7.2E-53 2.5E-57 433.9 31.7 340 63-419 24-382 (591)
16 3fho_A ATP-dependent RNA helic 100.0 7E-54 2.4E-58 437.5 19.4 367 59-435 118-495 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 3.8E-52 1.3E-56 424.5 28.8 340 60-421 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 8.8E-52 3E-56 413.2 26.9 348 70-446 9-400 (414)
19 3l9o_A ATP-dependent RNA helic 100.0 2.7E-50 9.3E-55 439.6 23.3 332 61-411 163-597 (1108)
20 2zj8_A DNA helicase, putative 100.0 6.9E-49 2.4E-53 417.8 23.0 349 61-431 2-405 (720)
21 2va8_A SSO2462, SKI2-type heli 100.0 5.2E-48 1.8E-52 411.2 29.1 336 60-412 8-409 (715)
22 3tbk_A RIG-I helicase domain; 100.0 3.5E-47 1.2E-51 394.8 32.8 334 82-419 4-515 (555)
23 2ykg_A Probable ATP-dependent 100.0 4E-48 1.4E-52 412.1 24.2 344 72-419 3-524 (696)
24 2p6r_A Afuhel308 helicase; pro 100.0 8.4E-49 2.9E-53 416.0 18.6 336 61-413 2-390 (702)
25 4ddu_A Reverse gyrase; topoiso 100.0 1.2E-47 4E-52 418.8 27.8 346 77-449 74-530 (1104)
26 4a2p_A RIG-I, retinoic acid in 100.0 3E-47 1E-51 395.4 29.5 332 78-414 3-511 (556)
27 2xgj_A ATP-dependent RNA helic 100.0 2.4E-47 8.1E-52 413.1 29.1 323 77-419 82-508 (1010)
28 1tf5_A Preprotein translocase 100.0 1.5E-47 5.3E-52 393.9 23.0 326 77-413 79-547 (844)
29 4a2q_A RIG-I, retinoic acid in 100.0 3.9E-46 1.3E-50 400.3 31.5 333 77-414 243-752 (797)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 3.6E-47 1.2E-51 415.4 22.9 324 73-425 48-468 (1054)
31 4a4z_A Antiviral helicase SKI2 100.0 1.5E-45 5E-50 399.1 26.7 323 78-419 36-502 (997)
32 4a2w_A RIG-I, retinoic acid in 100.0 3.3E-45 1.1E-49 396.9 29.3 333 77-414 243-752 (936)
33 4f92_B U5 small nuclear ribonu 100.0 1.3E-45 4.4E-50 416.1 22.8 344 67-419 66-481 (1724)
34 1wp9_A ATP-dependent RNA helic 100.0 1.9E-44 6.4E-49 368.2 27.9 325 82-414 9-478 (494)
35 4gl2_A Interferon-induced heli 100.0 1.3E-45 4.4E-50 393.0 18.0 324 82-410 7-517 (699)
36 1gm5_A RECG; helicase, replica 100.0 4.3E-45 1.5E-49 383.5 21.3 327 69-418 356-704 (780)
37 2fsf_A Preprotein translocase 100.0 4.9E-45 1.7E-49 374.2 20.6 325 78-413 71-585 (853)
38 4f92_B U5 small nuclear ribonu 100.0 9.2E-44 3.1E-48 401.0 30.6 344 67-419 911-1316(1724)
39 1nkt_A Preprotein translocase 100.0 5.8E-44 2E-48 366.5 23.6 326 77-413 107-619 (922)
40 2eyq_A TRCF, transcription-rep 100.0 3.2E-42 1.1E-46 378.5 31.9 322 67-412 588-923 (1151)
41 2oca_A DAR protein, ATP-depend 100.0 1.5E-43 5.2E-48 363.1 12.3 311 81-409 112-453 (510)
42 2whx_A Serine protease/ntpase/ 100.0 1.2E-43 4.2E-48 366.2 7.9 314 65-423 155-493 (618)
43 2jlq_A Serine protease subunit 100.0 1.6E-42 5.6E-47 347.8 12.7 287 79-410 1-310 (451)
44 3o8b_A HCV NS3 protease/helica 100.0 2.8E-42 9.6E-47 352.4 13.4 304 82-440 217-547 (666)
45 2xau_A PRE-mRNA-splicing facto 100.0 7.6E-41 2.6E-45 353.9 18.7 335 58-413 70-445 (773)
46 2fwr_A DNA repair protein RAD2 100.0 6.2E-41 2.1E-45 340.4 16.9 292 82-411 93-454 (472)
47 1yks_A Genome polyprotein [con 100.0 4.3E-42 1.5E-46 343.1 7.9 282 93-423 4-314 (440)
48 2wv9_A Flavivirin protease NS2 100.0 2E-42 6.7E-47 359.3 4.5 306 74-423 202-548 (673)
49 2z83_A Helicase/nucleoside tri 100.0 6.6E-40 2.3E-44 329.4 11.9 273 91-411 15-313 (459)
50 3rc3_A ATP-dependent RNA helic 100.0 1.1E-38 3.6E-43 330.1 15.5 286 92-422 150-455 (677)
51 3h1t_A Type I site-specific re 100.0 7E-38 2.4E-42 326.2 20.3 312 82-409 178-556 (590)
52 2v6i_A RNA helicase; membrane, 100.0 1.6E-38 5.6E-43 316.7 14.5 269 96-408 1-288 (431)
53 3dmq_A RNA polymerase-associat 100.0 1.7E-37 5.8E-42 336.9 21.9 333 81-423 152-625 (968)
54 3fe2_A Probable ATP-dependent 100.0 6.4E-37 2.2E-41 282.3 22.5 208 57-267 26-238 (242)
55 3ber_A Probable ATP-dependent 100.0 2E-36 6.8E-41 279.6 21.5 207 58-266 41-247 (249)
56 1vec_A ATP-dependent RNA helic 100.0 6.4E-36 2.2E-40 268.9 24.2 202 60-264 3-205 (206)
57 3bor_A Human initiation factor 100.0 4.2E-36 1.4E-40 275.8 20.4 207 57-266 27-234 (237)
58 1q0u_A Bstdead; DEAD protein, 100.0 3.1E-36 1.1E-40 273.5 18.8 204 60-266 4-211 (219)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 3.5E-36 1.2E-40 279.5 19.1 216 58-276 21-249 (253)
60 2oxc_A Probable ATP-dependent 100.0 1.4E-35 5E-40 271.0 22.5 204 58-265 22-227 (230)
61 3iuy_A Probable ATP-dependent 100.0 1.2E-35 4E-40 271.5 21.4 204 57-264 16-226 (228)
62 1z63_A Helicase of the SNF2/RA 100.0 9.1E-36 3.1E-40 304.6 23.1 312 82-412 37-454 (500)
63 3fmo_B ATP-dependent RNA helic 100.0 6E-36 2E-40 283.6 20.1 205 57-266 89-297 (300)
64 3ly5_A ATP-dependent RNA helic 100.0 1.5E-35 5E-40 276.0 21.8 203 58-262 50-258 (262)
65 1qde_A EIF4A, translation init 100.0 2.2E-35 7.5E-40 269.0 22.6 206 58-267 12-217 (224)
66 3jux_A Protein translocase sub 100.0 1.4E-34 4.8E-39 290.8 28.0 322 78-412 72-588 (822)
67 2pl3_A Probable ATP-dependent 100.0 7.8E-35 2.7E-39 267.5 23.4 206 58-266 23-232 (236)
68 2gxq_A Heat resistant RNA depe 100.0 1.6E-34 5.4E-39 260.0 22.2 200 61-265 2-204 (207)
69 1t6n_A Probable ATP-dependent 100.0 2.1E-34 7.1E-39 261.7 21.0 202 60-264 14-218 (220)
70 3mwy_W Chromo domain-containin 100.0 1.5E-33 5E-38 301.9 24.4 319 82-412 236-685 (800)
71 1z3i_X Similar to RAD54-like; 100.0 1.4E-32 4.8E-37 287.2 30.7 321 82-412 55-529 (644)
72 3dkp_A Probable ATP-dependent 100.0 1.2E-33 4E-38 261.2 18.0 208 59-267 24-241 (245)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.6E-33 5.6E-38 303.2 21.2 328 69-409 251-707 (1038)
74 2ipc_A Preprotein translocase 100.0 2.1E-30 7.1E-35 265.3 28.2 133 78-218 76-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 6.1E-29 2.1E-33 259.3 27.5 175 236-420 380-559 (664)
76 2d7d_A Uvrabc system protein B 100.0 2.1E-27 7E-32 247.7 28.3 175 235-419 385-564 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 2.5E-28 8.6E-33 210.0 15.3 156 272-430 6-161 (163)
78 1fuk_A Eukaryotic initiation f 100.0 5.1E-28 1.7E-32 208.7 16.1 157 275-434 3-160 (165)
79 2rb4_A ATP-dependent RNA helic 100.0 4.9E-28 1.7E-32 210.9 13.8 160 272-434 4-170 (175)
80 1t5i_A C_terminal domain of A 100.0 5.6E-28 1.9E-32 209.5 13.6 158 273-433 3-161 (172)
81 3eaq_A Heat resistant RNA depe 99.9 4.3E-27 1.5E-31 211.1 18.1 158 276-436 6-163 (212)
82 2p6n_A ATP-dependent RNA helic 99.9 1E-27 3.5E-32 211.0 11.9 167 258-428 12-179 (191)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.3E-27 4.4E-32 209.6 12.0 159 270-430 14-172 (185)
84 3i32_A Heat resistant RNA depe 99.9 2.3E-26 7.9E-31 215.8 18.8 158 275-435 2-159 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.4E-27 4.8E-32 206.9 0.0 154 275-431 3-157 (170)
86 3b6e_A Interferon-induced heli 99.9 4.4E-25 1.5E-29 199.5 7.8 167 78-245 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 2.9E-23 9.9E-28 212.4 19.8 306 78-410 4-520 (540)
88 1rif_A DAR protein, DNA helica 99.9 1.3E-23 4.4E-28 197.8 9.9 155 82-251 113-267 (282)
89 3llm_A ATP-dependent RNA helic 99.9 9.6E-23 3.3E-27 186.3 15.2 176 72-261 51-231 (235)
90 3crv_A XPD/RAD3 related DNA he 99.9 1.1E-20 3.7E-25 194.1 29.3 285 82-383 3-473 (551)
91 2fz4_A DNA repair protein RAD2 99.8 2.5E-20 8.4E-25 170.0 14.0 137 82-248 93-230 (237)
92 1z5z_A Helicase of the SNF2/RA 99.8 4.4E-20 1.5E-24 171.1 13.3 128 284-412 93-225 (271)
93 4a15_A XPD helicase, ATP-depen 99.8 5.6E-19 1.9E-23 182.6 15.7 82 82-165 3-88 (620)
94 1w36_D RECD, exodeoxyribonucle 98.9 1.4E-09 4.8E-14 112.3 9.2 146 84-245 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.4 5.8E-07 2E-11 93.8 10.1 67 82-151 189-256 (646)
96 3e1s_A Exodeoxyribonuclease V, 98.4 1.4E-06 4.7E-11 89.1 12.5 126 82-244 189-314 (574)
97 2gk6_A Regulator of nonsense t 98.3 2.1E-06 7.1E-11 89.1 11.9 70 80-151 178-247 (624)
98 2xzl_A ATP-dependent helicase 98.3 5E-06 1.7E-10 88.2 14.5 69 81-151 359-427 (802)
99 3upu_A ATP-dependent DNA helic 98.3 2.1E-06 7.1E-11 85.8 10.4 69 78-148 21-94 (459)
100 3lfu_A DNA helicase II; SF1 he 98.3 5.8E-05 2E-09 79.0 20.7 71 81-153 8-79 (647)
101 2wjy_A Regulator of nonsense t 98.2 6E-06 2E-10 87.5 12.0 69 81-151 355-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.1 2.1E-05 7E-10 73.0 12.0 125 284-414 106-240 (328)
103 2o0j_A Terminase, DNA packagin 97.5 0.0009 3.1E-08 64.3 12.3 71 82-153 163-233 (385)
104 3cpe_A Terminase, DNA packagin 97.4 0.0013 4.4E-08 67.7 13.0 73 82-155 163-235 (592)
105 3ec2_A DNA replication protein 97.1 0.0016 5.3E-08 55.7 8.7 20 96-115 37-56 (180)
106 3vkw_A Replicase large subunit 97.0 0.001 3.4E-08 64.8 7.3 106 99-244 163-268 (446)
107 1uaa_A REP helicase, protein ( 97.0 0.001 3.6E-08 69.7 7.4 80 82-163 2-85 (673)
108 2orw_A Thymidine kinase; TMTK, 97.0 0.0032 1.1E-07 54.0 9.2 39 97-138 3-41 (184)
109 1xx6_A Thymidine kinase; NESG, 96.9 0.0012 4.2E-08 56.8 6.2 39 97-138 8-46 (191)
110 2kjq_A DNAA-related protein; s 96.9 0.00094 3.2E-08 55.1 5.0 19 96-114 35-53 (149)
111 2b8t_A Thymidine kinase; deoxy 96.8 0.0015 5.1E-08 57.7 5.6 91 97-218 12-102 (223)
112 1a5t_A Delta prime, HOLB; zinc 96.8 0.0043 1.5E-07 58.9 9.0 40 83-123 3-49 (334)
113 3u4q_A ATP-dependent helicase/ 96.7 0.0025 8.6E-08 71.3 7.9 68 82-151 10-80 (1232)
114 2j9r_A Thymidine kinase; TK1, 96.6 0.0024 8.4E-08 55.5 5.7 40 97-139 28-67 (214)
115 1pjr_A PCRA; DNA repair, DNA r 96.6 0.0041 1.4E-07 65.6 8.3 70 81-152 10-80 (724)
116 1l8q_A Chromosomal replication 96.4 0.0088 3E-07 56.4 8.5 36 97-135 37-72 (324)
117 2zpa_A Uncharacterized protein 96.3 0.0041 1.4E-07 63.6 6.1 113 82-247 175-289 (671)
118 3kl4_A SRP54, signal recogniti 96.3 0.019 6.4E-07 56.0 10.0 129 99-256 99-233 (433)
119 2orv_A Thymidine kinase; TP4A 96.2 0.011 3.6E-07 52.1 7.4 39 97-138 19-57 (234)
120 3u61_B DNA polymerase accessor 96.2 0.015 5E-07 54.8 9.1 40 204-243 104-143 (324)
121 2chg_A Replication factor C sm 96.1 0.04 1.4E-06 48.2 10.7 39 205-244 102-140 (226)
122 3n70_A Transport activator; si 96.1 0.015 5.3E-07 47.4 7.4 21 95-115 22-42 (145)
123 3te6_A Regulatory protein SIR3 96.0 0.022 7.7E-07 53.1 8.9 26 97-123 45-70 (318)
124 2z4s_A Chromosomal replication 96.0 0.014 4.7E-07 57.6 7.9 38 97-135 130-167 (440)
125 1d2n_A N-ethylmaleimide-sensit 95.9 0.049 1.7E-06 49.7 10.5 18 98-115 65-82 (272)
126 2w58_A DNAI, primosome compone 95.8 0.023 8E-07 49.2 7.9 25 98-123 55-79 (202)
127 1w4r_A Thymidine kinase; type 95.8 0.011 3.9E-07 50.4 5.4 38 97-137 20-57 (195)
128 3bos_A Putative DNA replicatio 95.7 0.013 4.3E-07 52.4 5.9 20 96-115 51-70 (242)
129 3co5_A Putative two-component 95.7 0.027 9.1E-07 45.9 7.3 19 95-113 25-43 (143)
130 3e2i_A Thymidine kinase; Zn-bi 95.7 0.0094 3.2E-07 51.7 4.5 40 97-139 28-67 (219)
131 2v1u_A Cell division control p 95.6 0.025 8.7E-07 54.4 7.9 19 97-115 44-62 (387)
132 2qgz_A Helicase loader, putati 95.6 0.03 1E-06 52.2 8.0 20 97-116 152-171 (308)
133 3dm5_A SRP54, signal recogniti 95.6 0.089 3.1E-06 51.3 11.5 129 99-256 102-234 (443)
134 1jbk_A CLPB protein; beta barr 95.6 0.16 5.6E-06 42.9 12.2 18 98-115 44-61 (195)
135 3h4m_A Proteasome-activating n 95.5 0.039 1.3E-06 50.8 8.6 55 59-115 13-69 (285)
136 2qby_B CDC6 homolog 3, cell di 95.5 0.016 5.4E-07 56.0 6.0 18 98-115 46-63 (384)
137 4b4t_J 26S protease regulatory 95.4 0.12 4E-06 49.7 11.3 55 58-115 143-200 (405)
138 1g5t_A COB(I)alamin adenosyltr 95.3 0.036 1.2E-06 47.5 6.8 136 98-254 29-171 (196)
139 3syl_A Protein CBBX; photosynt 95.3 0.011 3.7E-07 55.3 3.8 18 98-115 68-85 (309)
140 2p65_A Hypothetical protein PF 95.2 0.051 1.7E-06 46.0 7.8 19 97-115 43-61 (187)
141 1sxj_E Activator 1 40 kDa subu 95.2 0.093 3.2E-06 49.8 10.1 44 203-247 132-175 (354)
142 1iqp_A RFCS; clamp loader, ext 95.0 0.081 2.8E-06 49.5 9.1 39 204-243 109-147 (327)
143 1sxj_D Activator 1 41 kDa subu 95.0 0.064 2.2E-06 50.9 8.4 39 205-244 133-171 (353)
144 3eie_A Vacuolar protein sortin 94.9 0.11 3.9E-06 48.6 9.6 54 59-115 14-69 (322)
145 1jr3_A DNA polymerase III subu 94.8 0.23 7.7E-06 47.5 11.7 40 203-243 117-156 (373)
146 2qby_A CDC6 homolog 1, cell di 94.7 0.15 5.1E-06 48.8 10.3 19 97-115 45-63 (386)
147 1gm5_A RECG; helicase, replica 94.7 0.11 3.8E-06 54.8 9.8 78 305-382 418-500 (780)
148 1fnn_A CDC6P, cell division co 94.5 0.032 1.1E-06 53.8 5.1 17 99-115 46-62 (389)
149 3pfi_A Holliday junction ATP-d 94.5 0.15 5.2E-06 48.0 9.6 18 98-115 56-73 (338)
150 1njg_A DNA polymerase III subu 94.5 0.22 7.4E-06 43.9 10.1 17 99-115 47-63 (250)
151 1hqc_A RUVB; extended AAA-ATPa 94.1 0.26 8.9E-06 46.0 10.3 18 98-115 39-56 (324)
152 2zan_A Vacuolar protein sortin 93.9 0.29 9.8E-06 48.1 10.5 54 59-115 130-185 (444)
153 2gno_A DNA polymerase III, gam 93.9 0.14 4.8E-06 47.5 7.8 40 203-243 80-119 (305)
154 2rb4_A ATP-dependent RNA helic 93.8 0.6 2E-05 39.1 11.0 72 127-211 33-108 (175)
155 1sxj_C Activator 1 40 kDa subu 93.7 0.3 1E-05 46.1 9.9 39 204-243 109-147 (340)
156 2r6a_A DNAB helicase, replicat 93.6 0.19 6.5E-06 49.6 8.5 40 95-136 201-240 (454)
157 1sxj_A Activator 1 95 kDa subu 93.5 0.16 5.5E-06 51.1 7.9 40 205-246 148-189 (516)
158 2qp9_X Vacuolar protein sortin 93.3 0.48 1.6E-05 45.0 10.6 54 59-115 47-102 (355)
159 3pvs_A Replication-associated 93.2 0.16 5.5E-06 49.9 7.3 18 98-115 51-68 (447)
160 2hjv_A ATP-dependent RNA helic 93.2 0.47 1.6E-05 39.2 9.2 72 128-212 35-110 (163)
161 3hjh_A Transcription-repair-co 93.2 0.25 8.7E-06 48.9 8.6 53 96-154 13-65 (483)
162 1sxj_B Activator 1 37 kDa subu 93.1 0.063 2.2E-06 50.2 4.1 37 206-243 108-144 (323)
163 2q6t_A DNAB replication FORK h 93.1 0.2 6.7E-06 49.3 7.7 39 96-136 199-237 (444)
164 3oiy_A Reverse gyrase helicase 93.0 0.42 1.4E-05 46.4 10.0 77 304-380 64-147 (414)
165 3eaq_A Heat resistant RNA depe 92.7 0.69 2.4E-05 40.2 10.0 71 128-211 31-105 (212)
166 1t5i_A C_terminal domain of A 92.7 0.78 2.7E-05 38.3 9.9 71 128-211 31-105 (172)
167 3m6a_A ATP-dependent protease 92.1 0.25 8.6E-06 49.9 7.1 20 96-115 107-126 (543)
168 1fuk_A Eukaryotic initiation f 92.0 0.85 2.9E-05 37.7 9.3 72 128-212 30-105 (165)
169 3hu3_A Transitional endoplasmi 91.3 0.59 2E-05 46.4 8.6 19 97-115 238-256 (489)
170 2p6n_A ATP-dependent RNA helic 91.2 2.3 7.9E-05 36.1 11.4 71 128-211 54-128 (191)
171 4b4t_M 26S protease regulatory 91.1 0.26 9E-06 47.9 5.7 56 57-115 175-233 (434)
172 3k1j_A LON protease, ATP-depen 91.0 1.2 4.2E-05 45.5 11.1 22 93-114 56-77 (604)
173 2chq_A Replication factor C sm 90.9 0.12 4.1E-06 48.1 3.0 17 99-115 40-56 (319)
174 2eyq_A TRCF, transcription-rep 90.4 1.4 4.6E-05 48.9 11.3 74 305-378 653-731 (1151)
175 1t6n_A Probable ATP-dependent 90.0 1.4 4.8E-05 38.2 9.2 72 305-379 83-165 (220)
176 1w5s_A Origin recognition comp 89.6 1.8 6.2E-05 41.6 10.4 18 98-115 51-70 (412)
177 4ddu_A Reverse gyrase; topoiso 89.6 0.92 3.1E-05 50.0 9.0 76 304-380 121-204 (1104)
178 3cmu_A Protein RECA, recombina 89.5 0.31 1.1E-05 56.3 5.3 39 97-138 1427-1465(2050)
179 2jgn_A DBX, DDX3, ATP-dependen 89.5 1.1 3.9E-05 37.8 7.8 88 107-211 29-120 (185)
180 3i5x_A ATP-dependent RNA helic 89.4 2.8 9.6E-05 42.4 12.1 88 116-213 327-418 (563)
181 1e9r_A Conjugal transfer prote 89.3 0.31 1.1E-05 47.7 4.7 44 96-142 52-95 (437)
182 1ls1_A Signal recognition part 88.7 2.7 9.3E-05 38.5 10.4 20 97-116 98-117 (295)
183 3i32_A Heat resistant RNA depe 88.5 1.7 5.7E-05 40.1 8.7 71 128-211 28-102 (300)
184 3sqw_A ATP-dependent RNA helic 88.2 3.8 0.00013 41.6 12.1 86 119-214 279-368 (579)
185 3jvv_A Twitching mobility prot 87.8 0.54 1.8E-05 44.5 5.1 18 96-113 122-139 (356)
186 3e70_C DPA, signal recognition 87.8 2.3 7.8E-05 39.7 9.3 51 206-256 212-263 (328)
187 4b4t_L 26S protease subunit RP 87.6 0.44 1.5E-05 46.4 4.4 56 57-115 175-233 (437)
188 2i4i_A ATP-dependent RNA helic 87.6 3.7 0.00013 39.4 11.2 72 127-211 275-350 (417)
189 2dr3_A UPF0273 protein PH0284; 87.6 0.39 1.3E-05 42.6 3.8 50 96-149 22-71 (247)
190 2l8b_A Protein TRAI, DNA helic 87.3 0.37 1.3E-05 40.3 3.1 57 84-142 36-94 (189)
191 3pxi_A Negative regulator of g 87.1 1.1 3.6E-05 47.5 7.4 94 99-243 523-627 (758)
192 1oyw_A RECQ helicase, ATP-depe 87.0 1.4 4.7E-05 44.3 7.8 58 305-362 66-123 (523)
193 3fe2_A Probable ATP-dependent 86.9 2.9 9.8E-05 36.9 9.1 71 304-378 102-182 (242)
194 3b85_A Phosphate starvation-in 86.7 0.71 2.4E-05 40.0 4.8 36 80-115 5-40 (208)
195 1p9r_A General secretion pathw 86.6 1.1 3.7E-05 43.5 6.5 17 97-113 167-183 (418)
196 2v1x_A ATP-dependent DNA helic 86.5 1.5 5E-05 44.8 7.8 58 305-362 85-144 (591)
197 1qvr_A CLPB protein; coiled co 85.1 0.83 2.8E-05 49.0 5.3 19 98-116 192-210 (854)
198 2oap_1 GSPE-2, type II secreti 85.1 0.99 3.4E-05 45.1 5.5 39 73-113 237-276 (511)
199 2zts_A Putative uncharacterize 85.0 0.41 1.4E-05 42.6 2.5 52 97-151 30-81 (251)
200 4b4t_I 26S protease regulatory 85.0 1.1 3.7E-05 43.3 5.5 56 57-115 176-234 (437)
201 4b4t_H 26S protease regulatory 84.9 0.86 2.9E-05 44.4 4.8 55 58-115 204-261 (467)
202 3cf0_A Transitional endoplasmi 84.9 1.1 3.6E-05 41.4 5.3 54 59-115 11-67 (301)
203 4b4t_K 26S protease regulatory 84.8 2.2 7.4E-05 41.4 7.6 56 57-115 166-224 (428)
204 2w0m_A SSO2452; RECA, SSPF, un 84.6 0.7 2.4E-05 40.4 3.8 39 94-135 20-58 (235)
205 4ag6_A VIRB4 ATPase, type IV s 84.6 0.83 2.8E-05 44.0 4.6 41 96-139 34-74 (392)
206 1s2m_A Putative ATP-dependent 84.3 6 0.0002 37.7 10.7 71 128-211 258-332 (400)
207 2ffh_A Protein (FFH); SRP54, s 84.3 11 0.00038 36.3 12.4 41 98-141 99-141 (425)
208 2d7d_A Uvrabc system protein B 84.1 21 0.00071 36.8 15.2 77 128-217 445-525 (661)
209 3u4q_B ATP-dependent helicase/ 84.1 0.68 2.3E-05 51.6 4.2 51 100-151 4-54 (1166)
210 1lv7_A FTSH; alpha/beta domain 84.1 1.2 3.9E-05 39.9 5.1 54 59-115 8-63 (257)
211 2ius_A DNA translocase FTSK; n 84.1 1.1 3.9E-05 44.4 5.4 27 97-123 167-193 (512)
212 3ber_A Probable ATP-dependent 83.9 4.9 0.00017 35.6 9.2 83 292-378 98-192 (249)
213 3iuy_A Probable ATP-dependent 83.8 2.9 0.0001 36.4 7.6 71 304-378 94-173 (228)
214 3bh0_A DNAB-like replicative h 83.5 1.5 5E-05 40.8 5.7 54 94-151 65-118 (315)
215 3vfd_A Spastin; ATPase, microt 83.4 2.7 9.3E-05 40.2 7.8 19 97-115 148-166 (389)
216 3pey_A ATP-dependent RNA helic 83.2 6.7 0.00023 37.1 10.6 76 127-215 242-321 (395)
217 1kgd_A CASK, peripheral plasma 83.2 0.61 2.1E-05 39.2 2.7 20 96-115 4-23 (180)
218 1xti_A Probable ATP-dependent 83.1 7.5 0.00026 36.8 10.9 74 128-214 250-327 (391)
219 1xwi_A SKD1 protein; VPS4B, AA 83.1 1.6 5.4E-05 40.7 5.7 54 59-115 8-63 (322)
220 2oxc_A Probable ATP-dependent 82.9 3.6 0.00012 35.9 7.8 82 292-378 79-172 (230)
221 2qz4_A Paraplegin; AAA+, SPG7, 82.6 3.1 0.0001 37.0 7.4 19 97-115 39-57 (262)
222 3cf2_A TER ATPase, transitiona 82.5 1.9 6.4E-05 45.4 6.5 16 98-113 239-254 (806)
223 2eyu_A Twitching motility prot 82.5 0.57 1.9E-05 42.3 2.3 21 94-114 22-42 (261)
224 3hws_A ATP-dependent CLP prote 82.1 1.9 6.6E-05 40.8 6.1 20 96-115 50-69 (363)
225 1c4o_A DNA nucleotide excision 81.8 14 0.00049 38.1 12.9 76 128-216 439-518 (664)
226 2qmh_A HPR kinase/phosphorylas 81.5 0.72 2.5E-05 39.4 2.4 18 96-113 33-50 (205)
227 3cmw_A Protein RECA, recombina 81.3 1.3 4.3E-05 50.6 5.0 93 97-219 1431-1523(1706)
228 3fht_A ATP-dependent RNA helic 81.3 4.9 0.00017 38.4 8.8 71 128-211 266-340 (412)
229 2gza_A Type IV secretion syste 81.1 0.82 2.8E-05 43.5 3.0 20 94-113 172-191 (361)
230 3iij_A Coilin-interacting nucl 81.0 0.85 2.9E-05 38.2 2.8 22 95-116 9-30 (180)
231 2ewv_A Twitching motility prot 80.8 0.81 2.8E-05 43.7 2.8 20 95-114 134-153 (372)
232 3a8t_A Adenylate isopentenyltr 80.8 0.76 2.6E-05 42.9 2.5 16 98-113 41-56 (339)
233 3vaa_A Shikimate kinase, SK; s 80.7 0.86 3E-05 39.0 2.8 21 96-116 24-44 (199)
234 3tau_A Guanylate kinase, GMP k 80.7 0.86 2.9E-05 39.4 2.8 20 96-115 7-26 (208)
235 2db3_A ATP-dependent RNA helic 80.6 8.7 0.0003 37.2 10.3 68 131-211 303-374 (434)
236 1lvg_A Guanylate kinase, GMP k 80.6 0.87 3E-05 39.0 2.8 20 96-115 3-22 (198)
237 4akg_A Glutathione S-transfera 80.6 3.1 0.00011 49.9 8.0 51 67-118 890-944 (2695)
238 3b9p_A CG5977-PA, isoform A; A 80.5 2.3 8E-05 38.8 5.9 54 59-115 17-72 (297)
239 2cvh_A DNA repair and recombin 80.4 1.3 4.3E-05 38.4 3.8 34 96-135 19-52 (220)
240 2pt7_A CAG-ALFA; ATPase, prote 80.4 1.1 3.8E-05 41.9 3.6 20 94-113 168-187 (330)
241 1u94_A RECA protein, recombina 80.2 1.3 4.3E-05 42.0 3.9 38 96-136 62-99 (356)
242 2iut_A DNA translocase FTSK; n 80.2 1.9 6.5E-05 43.3 5.4 40 98-137 215-255 (574)
243 3bor_A Human initiation factor 80.2 3.7 0.00013 36.0 6.9 72 304-378 98-179 (237)
244 2zr9_A Protein RECA, recombina 80.1 1.2 4.2E-05 42.0 3.8 38 96-136 60-97 (349)
245 3exa_A TRNA delta(2)-isopenten 79.9 0.84 2.9E-05 42.1 2.5 17 99-115 5-21 (322)
246 2r8r_A Sensor protein; KDPD, P 79.8 1.6 5.4E-05 38.1 4.1 25 99-123 8-32 (228)
247 2px0_A Flagellar biosynthesis 79.7 1.5 5.2E-05 40.2 4.2 22 97-118 105-126 (296)
248 3nwn_A Kinesin-like protein KI 79.6 0.93 3.2E-05 42.8 2.8 25 90-114 96-122 (359)
249 3trf_A Shikimate kinase, SK; a 79.5 1 3.4E-05 37.9 2.7 20 97-116 5-24 (185)
250 3foz_A TRNA delta(2)-isopenten 79.4 0.89 3.1E-05 41.8 2.5 17 99-115 12-28 (316)
251 1u0j_A DNA replication protein 79.4 2.8 9.5E-05 37.7 5.7 44 69-115 73-122 (267)
252 2qor_A Guanylate kinase; phosp 79.3 0.98 3.3E-05 38.8 2.7 22 94-115 9-30 (204)
253 2gxq_A Heat resistant RNA depe 79.3 6.3 0.00022 33.4 8.0 71 304-378 72-150 (207)
254 2x8a_A Nuclear valosin-contain 79.3 0.58 2E-05 42.6 1.2 52 59-113 6-60 (274)
255 3bgw_A DNAB-like replicative h 79.2 2.4 8.1E-05 41.5 5.6 38 96-136 196-233 (444)
256 1w36_B RECB, exodeoxyribonucle 79.1 2.5 8.6E-05 47.1 6.5 53 99-151 18-79 (1180)
257 1bg2_A Kinesin; motor protein, 79.0 1.1 3.6E-05 41.8 2.9 26 90-115 69-96 (325)
258 2ehv_A Hypothetical protein PH 78.7 1.5 5.2E-05 38.8 3.8 25 94-118 27-51 (251)
259 1sky_E F1-ATPase, F1-ATP synth 78.7 5.1 0.00017 39.2 7.7 29 91-119 145-173 (473)
260 2bjv_A PSP operon transcriptio 78.6 3.2 0.00011 37.1 6.1 19 96-114 28-46 (265)
261 3ney_A 55 kDa erythrocyte memb 78.5 1.1 3.9E-05 38.3 2.7 20 96-115 18-37 (197)
262 4a1f_A DNAB helicase, replicat 78.4 2.7 9.3E-05 39.3 5.5 51 94-148 43-93 (338)
263 1f9v_A Kinesin-like protein KA 78.4 1.3 4.6E-05 41.6 3.4 27 89-115 75-103 (347)
264 2ze6_A Isopentenyl transferase 78.4 1 3.4E-05 40.4 2.5 16 100-115 4-19 (253)
265 2j41_A Guanylate kinase; GMP, 78.3 1.1 3.8E-05 38.4 2.7 21 95-115 4-24 (207)
266 3nbx_X ATPase RAVA; AAA+ ATPas 78.3 0.98 3.4E-05 44.9 2.6 28 86-113 30-57 (500)
267 2j0s_A ATP-dependent RNA helic 78.2 7 0.00024 37.4 8.7 71 128-211 276-350 (410)
268 3ly5_A ATP-dependent RNA helic 78.2 9.4 0.00032 34.0 9.0 71 304-378 126-207 (262)
269 1yks_A Genome polyprotein [con 78.1 4.4 0.00015 39.6 7.2 69 128-210 177-245 (440)
270 1qhx_A CPT, protein (chloramph 78.1 0.92 3.1E-05 37.8 2.1 19 97-115 3-21 (178)
271 2i1q_A DNA repair and recombin 78.1 1.6 5.4E-05 40.6 3.9 54 98-151 99-166 (322)
272 2pl3_A Probable ATP-dependent 78.0 5.6 0.00019 34.7 7.4 70 304-378 97-177 (236)
273 3lw7_A Adenylate kinase relate 78.0 0.85 2.9E-05 37.7 1.8 17 99-115 3-19 (179)
274 3dc4_A Kinesin-like protein NO 77.8 1.2 4E-05 41.9 2.8 25 90-114 86-112 (344)
275 3tr0_A Guanylate kinase, GMP k 77.8 1.2 4E-05 38.2 2.7 20 96-115 6-25 (205)
276 3t0q_A AGR253WP; kinesin, alph 77.8 1.3 4.5E-05 41.7 3.2 27 89-115 76-104 (349)
277 2h58_A Kinesin-like protein KI 77.6 1.2 4.2E-05 41.5 2.9 26 89-114 71-98 (330)
278 2r62_A Cell division protease 77.5 1.3 4.6E-05 39.8 3.1 19 97-115 44-62 (268)
279 1goj_A Kinesin, kinesin heavy 77.5 1.2 4.2E-05 41.9 2.9 24 91-114 73-98 (355)
280 2j37_W Signal recognition part 77.4 7.9 0.00027 38.4 8.8 35 99-136 103-137 (504)
281 1xp8_A RECA protein, recombina 77.4 1.7 5.7E-05 41.3 3.8 39 96-137 73-111 (366)
282 2vvg_A Kinesin-2; motor protei 77.4 1.3 4.3E-05 41.8 2.9 24 91-114 82-107 (350)
283 1tue_A Replication protein E1; 77.3 2.2 7.4E-05 36.7 4.1 44 69-114 28-75 (212)
284 3b6u_A Kinesin-like protein KI 77.2 1.2 4.1E-05 42.2 2.8 25 90-114 93-119 (372)
285 1ixz_A ATP-dependent metallopr 77.1 1.2 4.2E-05 39.7 2.8 54 58-114 11-66 (254)
286 1t5c_A CENP-E protein, centrom 77.1 1.2 4.2E-05 41.8 2.8 25 90-114 69-95 (349)
287 1v8k_A Kinesin-like protein KI 77.1 1.3 4.4E-05 42.6 2.9 25 91-115 147-173 (410)
288 3lre_A Kinesin-like protein KI 77.0 1.3 4.4E-05 41.8 2.9 24 91-114 98-123 (355)
289 3bfn_A Kinesin-like protein KI 77.0 1.2 4.3E-05 42.3 2.8 23 92-114 92-116 (388)
290 3d8b_A Fidgetin-like protein 1 76.9 5.1 0.00017 37.8 7.2 19 97-115 117-135 (357)
291 3gbj_A KIF13B protein; kinesin 76.9 1.2 4.3E-05 41.9 2.8 25 90-114 84-110 (354)
292 2y65_A Kinesin, kinesin heavy 76.9 1.4 4.7E-05 41.7 3.1 24 91-114 77-102 (365)
293 1vec_A ATP-dependent RNA helic 76.9 9.5 0.00032 32.2 8.4 70 305-378 72-152 (206)
294 1zp6_A Hypothetical protein AT 76.8 0.95 3.2E-05 38.3 1.8 19 95-113 7-25 (191)
295 3a00_A Guanylate kinase, GMP k 76.8 1.4 4.8E-05 37.2 2.9 17 98-114 2-18 (186)
296 2nr8_A Kinesin-like protein KI 76.7 1.3 4.4E-05 41.8 2.8 25 90-114 95-121 (358)
297 4etp_A Kinesin-like protein KA 76.7 1.3 4.6E-05 42.5 2.9 26 90-115 132-159 (403)
298 2zfi_A Kinesin-like protein KI 76.7 1.3 4.6E-05 41.9 2.9 25 90-114 81-107 (366)
299 3hr8_A Protein RECA; alpha and 76.6 1.2 4.1E-05 42.1 2.6 39 97-138 61-99 (356)
300 2r44_A Uncharacterized protein 76.6 1.1 3.7E-05 41.9 2.3 25 91-115 40-64 (331)
301 4a14_A Kinesin, kinesin-like p 76.6 1.4 4.9E-05 41.3 3.1 25 90-114 75-101 (344)
302 3vkg_A Dynein heavy chain, cyt 76.5 3.7 0.00012 49.9 7.0 76 67-144 873-953 (3245)
303 1x88_A Kinesin-like protein KI 76.3 1.2 4.2E-05 42.0 2.6 25 90-114 80-106 (359)
304 4dzz_A Plasmid partitioning pr 76.3 3.8 0.00013 34.9 5.6 31 102-135 7-37 (206)
305 1n0w_A DNA repair protein RAD5 76.3 1.9 6.4E-05 38.0 3.7 26 95-120 22-47 (243)
306 1cr0_A DNA primase/helicase; R 76.3 2.1 7.2E-05 39.2 4.1 40 94-135 32-71 (296)
307 1iy2_A ATP-dependent metallopr 76.3 1.7 5.9E-05 39.3 3.5 54 58-114 35-90 (278)
308 1wrb_A DJVLGB; RNA helicase, D 76.3 9.7 0.00033 33.6 8.5 70 305-378 101-180 (253)
309 1kag_A SKI, shikimate kinase I 76.0 1.5 5.3E-05 36.2 2.9 19 97-115 4-22 (173)
310 1nij_A Hypothetical protein YJ 75.9 2.1 7E-05 39.8 3.9 14 100-113 7-20 (318)
311 1gku_B Reverse gyrase, TOP-RG; 75.8 6.5 0.00022 43.1 8.4 90 286-378 82-181 (1054)
312 1ofh_A ATP-dependent HSL prote 75.8 4.7 0.00016 36.8 6.5 19 97-115 50-68 (310)
313 3crm_A TRNA delta(2)-isopenten 75.8 1.3 4.4E-05 41.1 2.5 17 99-115 7-23 (323)
314 1z6g_A Guanylate kinase; struc 75.8 1.6 5.4E-05 38.0 3.0 20 94-113 20-39 (218)
315 2z43_A DNA repair and recombin 75.8 1.9 6.5E-05 40.2 3.7 55 97-151 107-165 (324)
316 3cob_A Kinesin heavy chain-lik 75.8 1.2 4.1E-05 42.2 2.3 25 90-114 71-97 (369)
317 2v9p_A Replication protein E1; 75.8 1.6 5.5E-05 40.2 3.1 19 95-113 124-142 (305)
318 2wbe_C Bipolar kinesin KRP-130 75.8 1.4 4.6E-05 42.0 2.7 25 90-114 92-118 (373)
319 1y63_A LMAJ004144AAA protein; 75.7 1.5 5.1E-05 36.9 2.7 20 96-115 9-28 (184)
320 1vma_A Cell division protein F 75.2 2.2 7.6E-05 39.3 3.9 19 98-116 105-123 (306)
321 3u06_A Protein claret segregat 74.9 1.5 5.2E-05 42.2 2.8 26 89-114 129-156 (412)
322 1qde_A EIF4A, translation init 74.8 4.8 0.00016 34.8 6.0 82 292-378 69-161 (224)
323 2heh_A KIF2C protein; kinesin, 74.8 1.6 5.4E-05 41.6 2.9 27 90-116 126-154 (387)
324 1wp9_A ATP-dependent RNA helic 74.7 11 0.00036 36.7 9.2 73 303-380 51-133 (494)
325 2rep_A Kinesin-like protein KI 74.6 1.6 5.4E-05 41.5 2.8 25 90-114 107-133 (376)
326 2xxa_A Signal recognition part 74.5 8.3 0.00028 37.4 8.0 41 99-141 102-144 (433)
327 3d3q_A TRNA delta(2)-isopenten 74.5 1.5 5E-05 41.0 2.5 17 99-115 9-25 (340)
328 3uk6_A RUVB-like 2; hexameric 74.4 1.5 5E-05 41.7 2.6 19 97-115 70-88 (368)
329 3t15_A Ribulose bisphosphate c 74.3 1.9 6.4E-05 39.5 3.2 18 98-115 37-54 (293)
330 3kb2_A SPBC2 prophage-derived 74.3 1.6 5.3E-05 36.0 2.5 18 99-116 3-20 (173)
331 1kht_A Adenylate kinase; phosp 74.2 1.7 5.7E-05 36.6 2.7 19 97-115 3-21 (192)
332 1ex7_A Guanylate kinase; subst 74.2 1.5 5E-05 37.2 2.2 16 98-113 2-17 (186)
333 2owm_A Nckin3-434, related to 73.9 1.7 5.8E-05 42.3 2.9 23 92-114 130-154 (443)
334 4gp7_A Metallophosphoesterase; 73.8 1 3.4E-05 37.5 1.1 20 96-115 8-27 (171)
335 1ojl_A Transcriptional regulat 73.7 3.9 0.00013 37.6 5.2 19 96-114 24-42 (304)
336 1v5w_A DMC1, meiotic recombina 73.6 2.2 7.5E-05 40.1 3.6 41 97-137 122-165 (343)
337 1um8_A ATP-dependent CLP prote 73.4 5.7 0.0002 37.7 6.5 19 97-115 72-90 (376)
338 1ly1_A Polynucleotide kinase; 73.3 1.7 5.9E-05 36.1 2.5 17 99-115 4-20 (181)
339 3cm0_A Adenylate kinase; ATP-b 73.3 1.3 4.5E-05 37.2 1.7 20 97-116 4-23 (186)
340 2v6i_A RNA helicase; membrane, 73.1 4.6 0.00016 39.3 5.8 54 128-185 171-224 (431)
341 2c9o_A RUVB-like 1; hexameric 73.0 3.4 0.00012 40.5 5.0 19 97-115 63-81 (456)
342 1znw_A Guanylate kinase, GMP k 72.7 2 6.8E-05 36.9 2.8 21 93-113 16-36 (207)
343 1zu4_A FTSY; GTPase, signal re 72.7 2.8 9.4E-05 39.0 3.9 34 98-134 106-139 (320)
344 1rj9_A FTSY, signal recognitio 72.4 3.3 0.00011 38.2 4.3 19 97-115 102-120 (304)
345 4eun_A Thermoresistant glucoki 72.3 2 6.9E-05 36.6 2.8 20 96-115 28-47 (200)
346 3lnc_A Guanylate kinase, GMP k 72.3 1.5 5.2E-05 38.4 2.0 22 94-115 24-45 (231)
347 1s96_A Guanylate kinase, GMP k 72.0 2.1 7.1E-05 37.3 2.8 20 94-113 13-32 (219)
348 3io5_A Recombination and repai 72.0 2.3 8E-05 39.2 3.1 41 99-140 30-70 (333)
349 3eph_A TRNA isopentenyltransfe 72.0 1.7 5.8E-05 41.6 2.3 16 100-115 5-20 (409)
350 2r2a_A Uncharacterized protein 71.9 2.2 7.5E-05 36.5 2.9 21 100-120 8-28 (199)
351 3nwj_A ATSK2; P loop, shikimat 71.9 2.4 8.4E-05 37.7 3.3 21 96-116 47-67 (250)
352 3eiq_A Eukaryotic initiation f 71.7 5.9 0.0002 37.9 6.3 72 127-211 279-354 (414)
353 2yjt_D ATP-dependent RNA helic 74.2 0.81 2.8E-05 38.1 0.0 54 128-185 30-87 (170)
354 2yvu_A Probable adenylyl-sulfa 71.3 3.4 0.00012 34.6 3.9 20 97-116 13-32 (186)
355 2qt1_A Nicotinamide riboside k 70.9 1.5 5E-05 37.7 1.5 24 92-115 16-39 (207)
356 1xjc_A MOBB protein homolog; s 70.7 4.7 0.00016 33.4 4.5 25 99-124 6-30 (169)
357 1knq_A Gluconate kinase; ALFA/ 70.6 1.9 6.6E-05 35.7 2.2 19 97-115 8-26 (175)
358 1np6_A Molybdopterin-guanine d 70.5 5.4 0.00019 33.2 4.9 24 99-123 8-31 (174)
359 3b9q_A Chloroplast SRP recepto 70.3 3.4 0.00012 38.0 3.9 19 97-115 100-118 (302)
360 4gl2_A Interferon-induced heli 70.2 5.7 0.00019 41.3 6.2 94 108-210 380-487 (699)
361 4fcw_A Chaperone protein CLPB; 69.9 3.1 0.00011 38.2 3.7 17 99-115 49-65 (311)
362 2v3c_C SRP54, signal recogniti 69.9 3.4 0.00012 40.2 4.0 35 98-135 100-134 (432)
363 3p32_A Probable GTPase RV1496/ 69.9 64 0.0022 30.0 12.9 18 99-116 81-98 (355)
364 1zuh_A Shikimate kinase; alpha 69.8 2.4 8.2E-05 34.9 2.6 19 98-116 8-26 (168)
365 2c95_A Adenylate kinase 1; tra 69.7 2.5 8.6E-05 35.7 2.8 21 96-116 8-28 (196)
366 3uie_A Adenylyl-sulfate kinase 69.6 2.1 7.3E-05 36.5 2.3 20 96-115 24-43 (200)
367 3t61_A Gluconokinase; PSI-biol 69.4 2.3 8E-05 36.2 2.5 18 98-115 19-36 (202)
368 1gvn_B Zeta; postsegregational 69.2 1.9 6.6E-05 39.3 2.0 18 98-115 34-51 (287)
369 3tqc_A Pantothenate kinase; bi 68.8 6.4 0.00022 36.5 5.5 15 100-114 95-109 (321)
370 2v54_A DTMP kinase, thymidylat 68.7 2.5 8.5E-05 36.0 2.5 20 96-115 3-22 (204)
371 1wv9_A Rhodanese homolog TT165 68.5 4.3 0.00015 29.6 3.5 35 305-339 54-88 (94)
372 3umf_A Adenylate kinase; rossm 68.5 2.2 7.5E-05 37.1 2.1 21 96-116 28-48 (217)
373 3tbk_A RIG-I helicase domain; 68.4 13 0.00044 37.1 8.2 94 108-211 370-476 (555)
374 1via_A Shikimate kinase; struc 68.2 2.8 9.7E-05 34.7 2.7 18 99-116 6-23 (175)
375 2bdt_A BH3686; alpha-beta prot 68.1 2.6 8.9E-05 35.4 2.5 17 99-115 4-20 (189)
376 3gk5_A Uncharacterized rhodane 67.8 3.4 0.00012 31.1 2.9 35 305-339 56-90 (108)
377 3fb4_A Adenylate kinase; psych 67.7 2.7 9.1E-05 36.3 2.5 18 99-116 2-19 (216)
378 3c8u_A Fructokinase; YP_612366 67.6 2.6 9E-05 36.2 2.4 17 97-113 22-38 (208)
379 1hv8_A Putative ATP-dependent 67.5 14 0.00048 34.3 7.9 72 128-212 238-313 (367)
380 2rhm_A Putative kinase; P-loop 67.3 2.6 9.1E-05 35.4 2.4 19 98-116 6-24 (193)
381 1tev_A UMP-CMP kinase; ploop, 67.2 2.5 8.5E-05 35.6 2.2 19 98-116 4-22 (196)
382 1j8m_F SRP54, signal recogniti 67.2 5 0.00017 36.8 4.4 35 98-135 99-133 (297)
383 3sr0_A Adenylate kinase; phosp 67.0 2.8 9.7E-05 36.0 2.5 18 99-116 2-19 (206)
384 2iyv_A Shikimate kinase, SK; t 66.8 3.3 0.00011 34.5 2.9 19 98-116 3-21 (184)
385 3iwh_A Rhodanese-like domain p 66.8 3.8 0.00013 30.7 2.9 34 305-338 57-90 (103)
386 3foj_A Uncharacterized protein 66.7 4 0.00014 30.2 3.0 35 305-339 57-91 (100)
387 2l82_A Designed protein OR32; 66.7 24 0.00082 26.0 6.9 50 307-356 5-54 (162)
388 1in4_A RUVB, holliday junction 66.6 2.9 0.0001 39.0 2.8 18 98-115 52-69 (334)
389 2bwj_A Adenylate kinase 5; pho 66.6 3.1 0.00011 35.1 2.7 20 96-115 11-30 (199)
390 3dl0_A Adenylate kinase; phosp 66.4 2.9 9.9E-05 36.0 2.5 18 99-116 2-19 (216)
391 3cf2_A TER ATPase, transitiona 66.4 4.5 0.00015 42.6 4.3 54 58-114 472-528 (806)
392 1g8p_A Magnesium-chelatase 38 66.3 1.8 6.2E-05 40.6 1.2 19 97-115 45-63 (350)
393 2jtq_A Phage shock protein E; 66.2 12 0.0004 26.5 5.5 34 304-338 41-75 (85)
394 3eme_A Rhodanese-like domain p 66.2 3.9 0.00013 30.4 2.9 34 305-338 57-90 (103)
395 1f2t_A RAD50 ABC-ATPase; DNA d 66.1 3.4 0.00012 33.4 2.7 16 99-114 25-40 (149)
396 1ye8_A Protein THEP1, hypothet 66.1 3.2 0.00011 34.8 2.6 15 99-113 2-16 (178)
397 3dkp_A Probable ATP-dependent 66.0 14 0.00048 32.3 7.0 84 292-378 84-181 (245)
398 1q0u_A Bstdead; DEAD protein, 66.0 5.9 0.0002 34.1 4.4 71 304-378 72-156 (219)
399 1cke_A CK, MSSA, protein (cyti 65.9 3 0.0001 36.2 2.5 19 98-116 6-24 (227)
400 1nks_A Adenylate kinase; therm 65.9 2.9 9.9E-05 35.1 2.4 17 99-115 3-19 (194)
401 2og2_A Putative signal recogni 65.9 4.5 0.00015 38.2 3.8 18 98-115 158-175 (359)
402 3bs4_A Uncharacterized protein 65.9 5.4 0.00018 35.7 4.1 52 96-151 20-71 (260)
403 1e6c_A Shikimate kinase; phosp 65.8 3.4 0.00012 34.0 2.8 19 98-116 3-21 (173)
404 1ry6_A Internal kinesin; kines 65.7 3.3 0.00011 39.1 2.8 20 96-115 82-103 (360)
405 4a2p_A RIG-I, retinoic acid in 65.4 10 0.00034 37.9 6.7 72 304-379 55-137 (556)
406 4a74_A DNA repair and recombin 65.4 2.3 7.9E-05 37.0 1.7 21 96-116 24-44 (231)
407 1qf9_A UMP/CMP kinase, protein 65.3 3 0.0001 34.9 2.4 18 99-116 8-25 (194)
408 1aky_A Adenylate kinase; ATP:A 65.2 3.5 0.00012 35.7 2.8 20 97-116 4-23 (220)
409 1zd8_A GTP:AMP phosphotransfer 65.2 3 0.0001 36.3 2.4 19 97-115 7-25 (227)
410 2ce7_A Cell division protein F 65.1 9.3 0.00032 37.6 6.1 54 59-115 12-67 (476)
411 3kta_A Chromosome segregation 65.1 3.3 0.00011 34.5 2.6 16 99-114 28-43 (182)
412 2plr_A DTMP kinase, probable t 64.8 2.9 0.0001 35.7 2.2 20 97-116 4-23 (213)
413 2xau_A PRE-mRNA-splicing facto 64.8 40 0.0014 35.4 11.2 74 128-210 303-392 (773)
414 1zak_A Adenylate kinase; ATP:A 64.6 3.6 0.00012 35.6 2.8 19 98-116 6-24 (222)
415 3fmo_B ATP-dependent RNA helic 64.6 6 0.00021 36.2 4.4 81 291-378 148-241 (300)
416 4a2q_A RIG-I, retinoic acid in 64.5 12 0.00042 39.5 7.4 71 304-378 296-377 (797)
417 1m7g_A Adenylylsulfate kinase; 64.3 3.8 0.00013 35.2 2.8 31 84-115 13-43 (211)
418 3tif_A Uncharacterized ABC tra 64.2 2.6 8.8E-05 37.2 1.7 18 95-112 29-46 (235)
419 1fuu_A Yeast initiation factor 64.2 21 0.00073 33.5 8.5 70 304-378 89-168 (394)
420 1nlf_A Regulatory protein REPA 64.2 3.5 0.00012 37.3 2.7 28 92-119 25-52 (279)
421 1ak2_A Adenylate kinase isoenz 64.1 3.6 0.00012 36.0 2.7 20 97-116 16-35 (233)
422 3g5j_A Putative ATP/GTP bindin 64.0 10 0.00035 29.4 5.2 36 305-340 90-126 (134)
423 1c9k_A COBU, adenosylcobinamid 64.0 3.8 0.00013 34.3 2.6 33 100-139 2-34 (180)
424 2i3b_A HCR-ntpase, human cance 63.9 4.1 0.00014 34.5 2.9 42 203-247 103-146 (189)
425 3asz_A Uridine kinase; cytidin 63.6 3.1 0.00011 35.6 2.2 18 97-114 6-23 (211)
426 2pez_A Bifunctional 3'-phospho 63.5 3.4 0.00012 34.4 2.3 19 97-115 5-23 (179)
427 2cdn_A Adenylate kinase; phosp 63.4 3.5 0.00012 35.1 2.4 18 98-115 21-38 (201)
428 2jaq_A Deoxyguanosine kinase; 63.3 3.6 0.00012 34.9 2.5 17 99-115 2-18 (205)
429 3f9v_A Minichromosome maintena 63.2 3.5 0.00012 42.0 2.7 15 99-113 329-343 (595)
430 3qf7_A RAD50; ABC-ATPase, ATPa 63.2 4.2 0.00014 38.5 3.1 18 99-116 25-42 (365)
431 1ukz_A Uridylate kinase; trans 63.1 3.7 0.00013 34.9 2.5 17 99-115 17-33 (203)
432 1jjv_A Dephospho-COA kinase; P 63.0 3.7 0.00013 35.0 2.5 16 100-115 5-20 (206)
433 2vli_A Antibiotic resistance p 62.9 3.6 0.00012 34.2 2.4 20 97-116 5-24 (183)
434 2ykg_A Probable ATP-dependent 62.8 14 0.00047 38.3 7.3 76 127-211 397-485 (696)
435 2pt5_A Shikimate kinase, SK; a 62.5 3.9 0.00013 33.4 2.5 17 99-115 2-18 (168)
436 3ice_A Transcription terminati 62.5 5.8 0.0002 37.7 3.8 33 84-116 158-193 (422)
437 3pxg_A Negative regulator of g 62.3 5.1 0.00017 39.5 3.6 20 97-116 201-220 (468)
438 1rz3_A Hypothetical protein rb 62.2 6.7 0.00023 33.3 4.0 18 98-115 23-40 (201)
439 3cmu_A Protein RECA, recombina 62.2 5.1 0.00018 46.5 4.0 47 95-145 1079-1125(2050)
440 3tlx_A Adenylate kinase 2; str 62.1 3.8 0.00013 36.2 2.5 20 97-116 29-48 (243)
441 2if2_A Dephospho-COA kinase; a 61.9 3.8 0.00013 34.9 2.4 17 99-115 3-19 (204)
442 1q57_A DNA primase/helicase; d 61.8 3.7 0.00013 40.9 2.6 52 94-148 239-290 (503)
443 2yhs_A FTSY, cell division pro 61.6 6 0.0002 39.0 3.9 33 99-134 295-327 (503)
444 1e4v_A Adenylate kinase; trans 61.6 3.9 0.00013 35.2 2.4 18 99-116 2-19 (214)
445 2jlq_A Serine protease subunit 61.5 8.8 0.0003 37.5 5.2 54 128-185 188-241 (451)
446 2wwf_A Thymidilate kinase, put 61.4 4.2 0.00015 34.7 2.6 21 96-116 9-29 (212)
447 1pzn_A RAD51, DNA repair and r 61.4 4.3 0.00015 38.2 2.8 22 97-118 131-152 (349)
448 2wv9_A Flavivirin protease NS2 61.4 8.5 0.00029 39.8 5.2 53 128-185 410-463 (673)
449 2cbz_A Multidrug resistance-as 61.3 3.1 0.00011 36.7 1.7 19 95-113 29-47 (237)
450 2vhj_A Ntpase P4, P4; non- hyd 61.1 3.5 0.00012 38.1 2.1 26 94-119 120-145 (331)
451 4g1u_C Hemin import ATP-bindin 61.1 4.6 0.00016 36.3 2.8 19 95-113 35-53 (266)
452 2pbr_A DTMP kinase, thymidylat 60.8 4.3 0.00015 34.1 2.5 17 100-116 3-19 (195)
453 3lda_A DNA repair protein RAD5 60.8 5.1 0.00017 38.4 3.2 39 98-136 179-220 (400)
454 1z5z_A Helicase of the SNF2/RA 60.8 51 0.0017 29.4 9.8 75 105-185 92-172 (271)
455 3be4_A Adenylate kinase; malar 60.7 4.5 0.00016 34.9 2.7 19 98-116 6-24 (217)
456 2z0h_A DTMP kinase, thymidylat 60.6 4.4 0.00015 34.1 2.5 17 100-116 3-19 (197)
457 1uf9_A TT1252 protein; P-loop, 60.4 4.2 0.00014 34.5 2.4 17 99-115 10-26 (203)
458 1g41_A Heat shock protein HSLU 60.3 4.5 0.00015 39.3 2.8 19 97-115 50-68 (444)
459 4e22_A Cytidylate kinase; P-lo 60.2 4.7 0.00016 35.9 2.7 20 96-115 26-45 (252)
460 1nn5_A Similar to deoxythymidy 60.2 4.7 0.00016 34.5 2.7 21 96-116 8-28 (215)
461 3cwq_A Para family chromosome 60.2 66 0.0022 27.2 10.1 36 101-140 5-42 (209)
462 3auy_A DNA double-strand break 60.1 3.2 0.00011 39.4 1.7 17 99-115 27-43 (371)
463 2xb4_A Adenylate kinase; ATP-b 60.0 4.4 0.00015 35.2 2.5 17 100-116 3-19 (223)
464 1sgw_A Putative ABC transporte 60.0 3.6 0.00012 35.6 1.9 20 94-113 32-51 (214)
465 2bbw_A Adenylate kinase 4, AK4 59.8 4.5 0.00015 35.7 2.5 19 97-115 27-45 (246)
466 3cmw_A Protein RECA, recombina 59.6 6.1 0.00021 45.2 4.0 38 96-136 33-70 (1706)
467 3hix_A ALR3790 protein; rhodan 59.6 6.5 0.00022 29.4 3.0 35 305-339 53-88 (106)
468 3a4m_A L-seryl-tRNA(SEC) kinas 59.2 4.6 0.00016 36.1 2.5 18 98-115 5-22 (260)
469 2f1r_A Molybdopterin-guanine d 59.1 2.3 7.9E-05 35.4 0.4 17 99-115 4-20 (171)
470 1tf7_A KAIC; homohexamer, hexa 59.0 6.7 0.00023 39.2 3.9 41 94-137 278-318 (525)
471 3gfo_A Cobalt import ATP-bindi 58.5 3.6 0.00012 37.2 1.6 19 95-113 32-50 (275)
472 2ff7_A Alpha-hemolysin translo 58.3 3.7 0.00013 36.5 1.7 19 95-113 33-51 (247)
473 2pze_A Cystic fibrosis transme 58.2 3.7 0.00013 35.9 1.7 19 95-113 32-50 (229)
474 3aez_A Pantothenate kinase; tr 58.1 6.1 0.00021 36.4 3.2 18 97-114 90-107 (312)
475 2pjz_A Hypothetical protein ST 58.0 5.9 0.0002 35.5 3.0 17 97-113 30-46 (263)
476 3tqf_A HPR(Ser) kinase; transf 57.9 4.6 0.00016 33.6 2.0 21 96-116 15-35 (181)
477 2ghi_A Transport protein; mult 57.8 3.9 0.00013 36.7 1.7 20 94-113 43-62 (260)
478 2grj_A Dephospho-COA kinase; T 57.4 5.5 0.00019 33.8 2.5 17 100-116 15-31 (192)
479 1sq5_A Pantothenate kinase; P- 57.1 9 0.00031 35.2 4.2 17 98-114 81-97 (308)
480 2pcj_A ABC transporter, lipopr 56.8 3.9 0.00013 35.7 1.5 19 95-113 28-46 (224)
481 2p5t_B PEZT; postsegregational 56.8 4.2 0.00014 36.2 1.8 18 98-115 33-50 (253)
482 1htw_A HI0065; nucleotide-bind 56.6 4.9 0.00017 32.8 2.0 19 95-113 31-49 (158)
483 4h1g_A Maltose binding protein 56.6 5.8 0.0002 41.4 3.1 25 90-114 454-480 (715)
484 3dmn_A Putative DNA helicase; 56.4 62 0.0021 26.5 9.0 76 291-382 49-124 (174)
485 3flh_A Uncharacterized protein 56.3 6 0.0002 30.6 2.4 35 305-339 72-108 (124)
486 1vht_A Dephospho-COA kinase; s 56.1 5.7 0.00019 34.2 2.5 17 99-115 6-22 (218)
487 1odf_A YGR205W, hypothetical 3 56.1 5.6 0.00019 36.3 2.5 15 100-114 34-48 (290)
488 1b0u_A Histidine permease; ABC 55.9 4.4 0.00015 36.4 1.7 19 95-113 30-48 (262)
489 1ji0_A ABC transporter; ATP bi 55.8 4.3 0.00015 35.8 1.7 19 95-113 30-48 (240)
490 3zq6_A Putative arsenical pump 55.8 9.2 0.00031 35.4 4.0 33 100-135 17-49 (324)
491 1g6h_A High-affinity branched- 55.8 4.3 0.00015 36.3 1.7 19 95-113 31-49 (257)
492 1mv5_A LMRA, multidrug resista 55.8 3.7 0.00013 36.3 1.2 19 95-113 26-44 (243)
493 3qks_A DNA double-strand break 55.5 6.4 0.00022 33.6 2.7 17 99-115 25-41 (203)
494 2whx_A Serine protease/ntpase/ 55.3 16 0.00053 37.4 5.9 55 128-186 355-409 (618)
495 2woo_A ATPase GET3; tail-ancho 55.3 9.7 0.00033 35.4 4.1 33 100-135 22-54 (329)
496 2fsx_A RV0390, COG0607: rhodan 55.1 11 0.00039 30.0 4.0 35 305-339 81-116 (148)
497 1vpl_A ABC transporter, ATP-bi 54.8 4.7 0.00016 36.0 1.7 19 95-113 39-57 (256)
498 2k0z_A Uncharacterized protein 54.6 21 0.00071 26.7 5.2 36 304-339 56-91 (110)
499 2zu0_C Probable ATP-dependent 54.4 6 0.00021 35.6 2.4 19 95-113 44-62 (267)
500 2ixe_A Antigen peptide transpo 54.3 4.8 0.00016 36.3 1.7 20 94-113 42-61 (271)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9e-64 Score=501.21 Aligned_cols=365 Identities=36% Similarity=0.556 Sum_probs=325.3
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-----CCeEE
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-----YGVLA 131 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~-----~~~~~ 131 (493)
.+..+|+++++++.+.++|+.+||..|+|+|.++++.+++|+|++++||||||||++|++|++..+...+ .++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 3467899999999999999999999999999999999999999999999999999999999999887543 36789
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEee
Q 011100 132 LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211 (493)
Q Consensus 132 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vVi 211 (493)
||++||++|+.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|.+++... ...+.++++||+
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~---~~~l~~~~~lVl 209 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT---FITFEDTRFVVL 209 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT---SCCCTTCCEEEE
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC---CcccccCCeEEE
Confidence 99999999999999999999988889999999999988888888889999999999999998876 345789999999
Q ss_pred ccccccccCCCHHHHHHHHHhC--CcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcch
Q 011100 212 DEADRVLDVGFEEELRVVFQCL--PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD 289 (493)
Q Consensus 212 DEah~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (493)
||||++++++|...+..++..+ +...|+++||||++..+..+...+...+..+...........+.+.+..+....+.
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH
Confidence 9999999999999999999875 57889999999999999999988888777776655555566777888777776666
Q ss_pred HHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCC
Q 011100 290 VYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLD 369 (493)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 369 (493)
..+..++... . .++||||++++.++.++..|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 290 ~~l~~~l~~~---~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlD 365 (434)
T 2db3_A 290 SKLIEILSEQ---A-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365 (434)
T ss_dssp HHHHHHHHHC---C-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHhC---C-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCC
Confidence 6666666543 3 34999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEec-ccHHHHHHHHHHhcCccc
Q 011100 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ-NDVDLIHEIEAVVGKQLE 428 (493)
Q Consensus 370 i~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 428 (493)
+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++ ++......+.+.+.....
T Consensus 366 i~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~ 425 (434)
T 2db3_A 366 IKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQ 425 (434)
T ss_dssp CTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTC
T ss_pred cccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999994 566777777776654433
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.9e-61 Score=481.56 Aligned_cols=372 Identities=32% Similarity=0.543 Sum_probs=332.7
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
...+|+++++++.+.++|+.+||..|+|+|.++++.+++++++++.+|||||||++|++|+++.+.....+.++||++||
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 35679999999999999999999999999999999999999999999999999999999999988765557789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||+++..++... ...+..+++||+||||++
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~---~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR---SLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT---SSCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC---CccHhheeEEEEccHHHH
Confidence 99999999999999988899999999999988877777778999999999999998875 345678999999999999
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCc-chHHHHHHH
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV-KDVYLMHVL 296 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 296 (493)
.+.++...+..++..++...|++++|||++..+..+.......+..+...........+.+.+..+.... +...+..++
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 271 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 271 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHH
Confidence 9999999999999999999999999999998887777777777766655555455666777777666543 555555555
Q ss_pred HhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeE
Q 011100 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376 (493)
Q Consensus 297 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V 376 (493)
... ..+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 272 ~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V 348 (410)
T 2j0s_A 272 DTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 348 (410)
T ss_dssp HHH---TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEE
T ss_pred Hhc---CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEE
Confidence 443 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchH
Q 011100 377 LNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435 (493)
Q Consensus 377 i~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (493)
|+||+|++...|+||+||+||.|+.|.|++|+++.+...+..+++.++..+++++.+..
T Consensus 349 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 349 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp EESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred EEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchh
Confidence 99999999999999999999999999999999999999999999999999988876543
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-60 Score=474.33 Aligned_cols=366 Identities=36% Similarity=0.555 Sum_probs=320.3
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC-----------
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP----------- 126 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~----------- 126 (493)
...+|+++++++.+.++|..+||..|+|+|.++++.+++++|+++.+|||||||++|++|++..+....
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 345699999999999999999999999999999999999999999999999999999999998875432
Q ss_pred -------CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC
Q 011100 127 -------YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI 199 (493)
Q Consensus 127 -------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 199 (493)
.++++||++||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|..++...
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--- 169 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--- 169 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT---
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC---
Confidence 2367999999999999999999999888899999999999988888777788999999999999988875
Q ss_pred CCccCCcceEeeccccccccCCCHHHHHHHHHh--CCc--CCceeeeeecccchHHHHHHHhcCCceEEecccccccccc
Q 011100 200 PPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC--LPK--NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVET 275 (493)
Q Consensus 200 ~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (493)
...+.++++||+||||++.+++|...+..++.. ++. ..|++++|||++..+..+.......+..............
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 345788999999999999999999999999874 332 6789999999999988888888877776665555555667
Q ss_pred ceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCC
Q 011100 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 355 (493)
+.+.+..+....+...+..++.... ..+++||||++++.++.++..|...++.+..+||+++..+|..+++.|++|+.
T Consensus 250 i~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 327 (417)
T 2i4i_A 250 ITQKVVWVEESDKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 327 (417)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHTCC--TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSS
T ss_pred ceEEEEEeccHhHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCC
Confidence 7777777777767777777776542 23689999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccc
Q 011100 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLE 428 (493)
Q Consensus 356 ~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (493)
+|||||+++++|+|+|++++||+|++|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.+.....
T Consensus 328 ~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 328 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp CEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred CEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999988888887754433
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.8e-60 Score=474.20 Aligned_cols=375 Identities=32% Similarity=0.524 Sum_probs=317.2
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.....|+++++++.+.+.|+.+|+..|+++|.++++.++.|+++++.+|||||||++|++|+++.+.....+.++||++|
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 116 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAP 116 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeC
Confidence 34567999999999999999999999999999999999999999999999999999999999999887666788999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 137 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
+++|+.|+.+.+..++...+..+....|+.........+. ..++|+|+||++|.+++... ...+..+++||+||||
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR---YLSPKYIKMFVLDEAD 193 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT---SSCSTTCCEEEECSHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccCcEEEEECHH
Confidence 9999999999999999888999999999988877766654 77899999999999988875 3456788999999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCc-chHHHHH
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV-KDVYLMH 294 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 294 (493)
++.+.++...+..++..++.+.|++++|||++..+..+.......+..+...........+.+.+....... +...+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHH
Confidence 999999999999999999999999999999999888888888777777666655566667777777665443 4444444
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++.. ...+++||||++++.++.++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 274 ~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 350 (414)
T 3eiq_A 274 LYET---LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 350 (414)
T ss_dssp HHHS---SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCS
T ss_pred HHHh---CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCC
Confidence 4443 3446899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchHHH
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQEV 437 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (493)
+||++++|++...|+||+||+||.|+.|.|++|+++.+...+..+++.++..+++.+....++
T Consensus 351 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 351 LVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred EEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 999999999999999999999999999999999999999999999999999998887665544
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.2e-59 Score=462.78 Aligned_cols=369 Identities=31% Similarity=0.528 Sum_probs=327.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
..+|+++++++.+.++|..+||..|+|+|.++++.+++++++++.+|||+|||++|++|++..+.....+.++||++|++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 45799999999999999999999999999999999999999999999999999999999999887665577899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
+|+.|+.+.+..++...++.+..++|+.....+.......++|+|+||+++..++... ...+.++++||+||||++.
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK---VADLSDCSLFIMDEADKML 176 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEEEESHHHHS
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC---CcccccCCEEEEeCchHhh
Confidence 9999999999999988899999999999887777777788999999999999888765 3457889999999999999
Q ss_pred cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHh
Q 011100 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (493)
+.++...+..++..++...|++++|||++..+..+.......+........ .....+.+.+..+....+...+..++..
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 255 (400)
T 1s2m_A 177 SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLFSK 255 (400)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHH
T ss_pred hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHHhh
Confidence 888889999999998889999999999999888888777777665544332 3344556666666655555555555544
Q ss_pred hhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE
Q 011100 299 MEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN 378 (493)
Q Consensus 299 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~ 378 (493)
...+++||||++++.++.++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 256 ---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~ 332 (400)
T 1s2m_A 256 ---LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN 332 (400)
T ss_dssp ---SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE
T ss_pred ---cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 33479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccch
Q 011100 379 YDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434 (493)
Q Consensus 379 ~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (493)
+++|++...|+||+||+||.|+.|.|++|++++|...+..+++.++..++.++...
T Consensus 333 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 333 FDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp SSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred eCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999888776543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.5e-57 Score=449.27 Aligned_cols=367 Identities=31% Similarity=0.534 Sum_probs=320.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
..|+++++++.+.++|..+||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999998876666778999999999
Q ss_pred HHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 140 LAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
|+.|+.+.+..+.... ++++..++|+.........+. +.++|+|+||+++..++... ...+.++++||+||||++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~vViDEaH~~ 164 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKM 164 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCSEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccccccCEEEEeCHHHH
Confidence 9999999999998766 789999999988766655553 45899999999999988765 345788999999999999
Q ss_pred ccC-CCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccc-cccccceEEEEEecCCcchHHHHHH
Q 011100 218 LDV-GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGF-KTVETLKQQYIFIPKNVKDVYLMHV 295 (493)
Q Consensus 218 ~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (493)
.++ ++...+..++...+...|++++|||+++.+..+.......+..+...... .....+.+.+..+....+...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (391)
T 1xti_A 165 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 244 (391)
T ss_dssp TSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHH
T ss_pred hhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHH
Confidence 874 67788888888888899999999999999888888777776655443332 2345566677766666666666666
Q ss_pred HHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCe
Q 011100 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL 375 (493)
Q Consensus 296 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 375 (493)
+... ..+++||||++++.++.++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 245 l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 245 LDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 6543 4479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcceeeccccccCCCCccEEEEEecc-cHHHHHHHHHHhcCccccccc
Q 011100 376 VLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN-DVDLIHEIEAVVGKQLEEFEC 432 (493)
Q Consensus 376 Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 432 (493)
||++++|++...|+||+||+||.|+.|.|++++++. +...+..+++.++..+++.+.
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 999999999999999999999999999999999876 557788899988888877654
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5e-57 Score=451.28 Aligned_cols=374 Identities=28% Similarity=0.438 Sum_probs=315.4
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
....+|+++++++.+.++|..+||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+.....+.++||+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 34567999999999999999999999999999999999987 8999999999999999999999998877667789999
Q ss_pred cccHHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecc
Q 011100 135 TPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDE 213 (493)
+|+++|+.|+++.+..+.... ++.+....++...... ....++|+|+||+++..++.... ...+.++++||+||
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~--~~~~~~~~~iViDE 176 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDE 176 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSC--SSCGGGCCEEEEET
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcC--CcChhhCcEEEEeC
Confidence 999999999999999987654 5777777777654211 23467999999999999886543 34468899999999
Q ss_pred cccccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC-cchHH
Q 011100 214 ADRVLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN-VKDVY 291 (493)
Q Consensus 214 ah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 291 (493)
||++.+ .++...+..+...++.+.|++++|||+++.+..+.......+..+...........+.+.+...... .+...
T Consensus 177 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (412)
T 3fht_A 177 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQA 256 (412)
T ss_dssp HHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHH
T ss_pred HHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHH
Confidence 999887 6788889999999999999999999999999898888888887777666666666677776665542 23333
Q ss_pred HHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCC
Q 011100 292 LMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIP 371 (493)
Q Consensus 292 l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 371 (493)
+..++ .....+++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 257 l~~~~---~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 257 LCNLY---GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHH---HHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred HHHHH---hhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCcc
Confidence 33333 333447999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCeEEEecCCCC------CCcceeeccccccCCCCccEEEEEeccc-HHHHHHHHHHhcCcccccccchHHHH
Q 011100 372 TVDLVLNYDIPRY------PRDYVHRVGRTARAGRGGLAVSFVTQND-VDLIHEIEAVVGKQLEEFECKEQEVL 438 (493)
Q Consensus 372 ~v~~Vi~~~~p~s------~~~y~qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (493)
++++||+||+|++ ..+|+||+||+||.|+.|.|+++++..+ ...+..+++.++..++....+..+.+
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred CCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 9999999999964 5699999999999999999999998764 78899999999998888765554433
No 8
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.4e-59 Score=463.42 Aligned_cols=372 Identities=31% Similarity=0.511 Sum_probs=185.1
Q ss_pred CCCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 56 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 56 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
......|+++++++.+.+++..+|+..|+|+|.++++.+++++++++.+|||+|||++|++|++..+.....+.++||++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 34456799999999999999999999999999999999999999999999999999999999999887766677899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 136 PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 136 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
|+++|+.|+++.+..++...++.+..++|+.........+. .++|+|+||+++...+... ...+.++++||+||||
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~---~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR---RFRTDKIKMFILDEAD 172 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT---SSCCTTCCEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC---CcchhhCcEEEEEChH
Confidence 99999999999999999888999999999988766555443 6899999999999888765 3446789999999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCc-chHHHHH
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV-KDVYLMH 294 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 294 (493)
++.+.++...+..++..++...|++++|||+++.+..+.......+..+...........+.+.+..+.... +...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHH
Confidence 999999999999999999999999999999999888888777776666555444334444455544443322 3344444
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++... ..+++||||++++.++.++..|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 253 ~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 253 LYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC
Confidence 44332 336899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccch
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (493)
+||++++|+++..|+||+||+||.|++|.|++|+++++...+..+++.++..++..+.+.
T Consensus 330 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 330 LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcch
Confidence 999999999999999999999999999999999999999999999998888887765544
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-56 Score=438.92 Aligned_cols=360 Identities=32% Similarity=0.550 Sum_probs=315.9
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
..+|+++++++.+.++|+.+||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .+.++||++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 356999999999999999999999999999999999988 6999999999999999999999877653 36689999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++|+.|+.+.+..++...++.+..+.|+.....+...+. .++|+|+||+++...+... ...+.++++||+||||++
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iIiDEah~~ 159 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG---TLNLKNVKYFILDEADEM 159 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT---CSCTTSCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC---CcccccCCEEEEeCchHh
Confidence 999999999999998888899999999988766655543 7899999999999988765 344788999999999999
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHH
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLS 297 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (493)
.++++...+..++..++...+++++|||++.................... ....+.+.+..+....+...+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~ 235 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNENERFEALCRLLK 235 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC----SSSSSEEEEEECCGGGHHHHHHHHHC
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec----CCCCceEEEEEeChHHHHHHHHHHHh
Confidence 99999999999999998899999999999998877777766655444322 22355666666655555554444443
Q ss_pred hhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEE
Q 011100 298 KMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL 377 (493)
Q Consensus 298 ~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 377 (493)
....++||||++++.++.++..|+..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 236 ----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 236 ----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp ----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred ----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 3347899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccc
Q 011100 378 NYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431 (493)
Q Consensus 378 ~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (493)
++++|+++.+|+||+||+||.|++|.+++++++.+...+..+++.++..+++++
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999998887664
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.4e-56 Score=442.64 Aligned_cols=364 Identities=31% Similarity=0.491 Sum_probs=312.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
..+|+++++++.+.++|..+|+..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.....+.++||++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 467999999999999999999999999999999999998 899999999999999999999999877666778999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc
Q 011100 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 137 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~ 216 (493)
+++|+.|+++.+..++...++.+....++..... ....++|+|+||+++..++... ...+.++++||+||||+
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLDEADN 156 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT---CBCCTTCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC---CcccccCCEEEEEChhh
Confidence 9999999999999998888888888887754311 2346899999999999988765 34578899999999999
Q ss_pred ccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC-cchHHHHH
Q 011100 217 VLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN-VKDVYLMH 294 (493)
Q Consensus 217 ~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 294 (493)
+.+ .++...+..+...++.+.|++++|||+++.+..+.......+..............+.+.+...... .+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 887 6788888999999989999999999999998888888877777666555555556666666555432 22223333
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++ .....+++||||+++..++.++..|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 237 ~~---~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 313 (395)
T 3pey_A 237 LY---GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313 (395)
T ss_dssp HH---TTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEE
T ss_pred HH---HhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCC
Confidence 33 333447999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCC------CCCcceeeccccccCCCCccEEEEEec-ccHHHHHHHHHHhc-Cccccccc
Q 011100 375 LVLNYDIPR------YPRDYVHRVGRTARAGRGGLAVSFVTQ-NDVDLIHEIEAVVG-KQLEEFEC 432 (493)
Q Consensus 375 ~Vi~~~~p~------s~~~y~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 432 (493)
+||+||+|+ ++..|+||+||+||.|+.|.|++++.. ++...+..+++.++ ..+.....
T Consensus 314 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 999999998 889999999999999999999999986 45667788888877 55555543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.2e-56 Score=464.23 Aligned_cols=362 Identities=33% Similarity=0.511 Sum_probs=300.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhh--cCCcEEEEccCCCCchhHhHHHHHHHhhcCC----CCeEEEEEcccHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKIL--EGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLALVITPTREL 140 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~----~~~~~lil~Pt~~L 140 (493)
|++++.++|..+||..|+|+|.++++.++ .++++++.||||+|||++|++|+++.+.... .+.++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 7789999999999999999999999887642 24689999999999
Q ss_pred HHHHHHHHHHhcc----CCCceEEEEEcCCCHHHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 141 AYQLAEQFKALGS----GLHLRCEVVVGGMDLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 141 ~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
+.|+++.+..++. ...+.+..+.|+.....+...+. ..++|+|+||++|.+++.... ...+..+++|||||||
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc--ccccccCCEEEEEChH
Confidence 9999999998753 23467888899988777666553 479999999999998886531 2246788999999999
Q ss_pred ccccCCCHHHHHHHHHhCC-------cCCceeeeeecccchHHHHHHHhcCCceEEeccc----cccccccceEEEEEec
Q 011100 216 RVLDVGFEEELRVVFQCLP-------KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE----GFKTVETLKQQYIFIP 284 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 284 (493)
++++++|...+..++..++ ...|+++||||+++.+..+....+..+....... .......+.+.+....
T Consensus 186 ~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEec
Confidence 9999999999988877654 2679999999999988888877776654443222 1122334445554444
Q ss_pred CCcc-h-HHHHHHHHhhhh-cCCCeEEEEecchhhHHHHHHHHHhc---CCceeeccCCCCHHHHHHHHHHhhcCCCeEE
Q 011100 285 KNVK-D-VYLMHVLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEEL---DQEAVALHSFKSQSQRLSALHRFKSGQATIL 358 (493)
Q Consensus 285 ~~~~-~-~~l~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 358 (493)
.... . ..+..+...+.. ....++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 345 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEE
Confidence 3221 1 222333333332 33479999999999999999999987 8899999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccccc
Q 011100 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430 (493)
Q Consensus 359 v~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (493)
|||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.|++|+.+.+...+..+++..+..+...
T Consensus 346 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred EEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999887666544
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.1e-58 Score=466.14 Aligned_cols=371 Identities=28% Similarity=0.447 Sum_probs=176.7
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
...+|++++|++.+.++|..+||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.....++++|||+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 4568999999999999999999999999999999999987 89999999999999999999999988766677899999
Q ss_pred ccHHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccc
Q 011100 136 PTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 136 Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEa 214 (493)
||++|+.|+++.+..+.... ++.+....++..... .....++|+|+||+++.+++.... ...+.++++||||||
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEA 244 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---TCCCCCSEEEECHHHHHHHHTTSC--CCCGGGCCEEEECCH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---cccCCCCEEEECchHHHHHHHhcC--CcCcccCCEEEEECH
Confidence 99999999999999887653 567777777654321 113457999999999999986643 345689999999999
Q ss_pred ccccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC-CcchHHH
Q 011100 215 DRVLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK-NVKDVYL 292 (493)
Q Consensus 215 h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 292 (493)
|++.+ .++...+..+...++.+.|++++|||++..+..+.......+..+...........+.+.+..+.. ..+...+
T Consensus 245 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp HHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------
T ss_pred HHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHH
Confidence 99987 678888889999999999999999999999999988888888777666655556666666665554 3334444
Q ss_pred HHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCC
Q 011100 293 MHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPT 372 (493)
Q Consensus 293 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 372 (493)
..++... ...++||||+++..++.++..|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 325 ~~~~~~~---~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 325 CNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhc---cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 4444332 3368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEecCCC------CCCcceeeccccccCCCCccEEEEEeccc-HHHHHHHHHHhcCcccccccchHH
Q 011100 373 VDLVLNYDIPR------YPRDYVHRVGRTARAGRGGLAVSFVTQND-VDLIHEIEAVVGKQLEEFECKEQE 436 (493)
Q Consensus 373 v~~Vi~~~~p~------s~~~y~qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 436 (493)
+++||+||+|. +...|+||+||+||.|+.|.|++|++..+ ...+..+++.++..++.......+
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 99999999995 56899999999999999999999998665 778888888888877776554433
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.8e-56 Score=459.90 Aligned_cols=362 Identities=33% Similarity=0.513 Sum_probs=299.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhh--cCCcEEEEccCCCCchhHhHHHHHHHhhcCC----CCeEEEEEcccHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKIL--EGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLALVITPTREL 140 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~----~~~~~lil~Pt~~L 140 (493)
|++++.+++..+||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+.... .+.++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999999987643 24589999999999
Q ss_pred HHHHHHHHHHhccC----CCceEEEEEcCCCHHHHHHHh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 141 AYQLAEQFKALGSG----LHLRCEVVVGGMDLLTQAKSL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 141 ~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
+.|+++.+..+... ....+..+.|+.....+...+ ...++|+|+||++|.+++.... ...++.+++|||||||
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEEeCHH
Confidence 99999999987432 245688889998877666555 4578999999999998886541 1246789999999999
Q ss_pred ccccCCCHHHHHHHHHhCC-------cCCceeeeeecccchHHHHHHHhcCCceEEeccc----cccccccceEEEEEec
Q 011100 216 RVLDVGFEEELRVVFQCLP-------KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYE----GFKTVETLKQQYIFIP 284 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 284 (493)
++.+++|...+..++..++ ...|+++||||+++.+..+.......+....... .......+.+.+....
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECc
Confidence 9999999999988877653 3678999999999988888877776654433221 1122334445555444
Q ss_pred CCcc-hH-HHHHHHHhhhh-cCCCeEEEEecchhhHHHHHHHHHhc---CCceeeccCCCCHHHHHHHHHHhhcCCCeEE
Q 011100 285 KNVK-DV-YLMHVLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEEL---DQEAVALHSFKSQSQRLSALHRFKSGQATIL 358 (493)
Q Consensus 285 ~~~~-~~-~l~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 358 (493)
.... .. .+..+...+.. ....++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 3221 11 22233333322 33479999999999999999999987 8899999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccccc
Q 011100 359 LATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430 (493)
Q Consensus 359 v~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (493)
|||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+.+.+...++.+++..+..++..
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred EEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999998887766544
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-54 Score=417.72 Aligned_cols=335 Identities=33% Similarity=0.551 Sum_probs=286.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 146 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 146 (493)
|++++.++|+.+||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+++|+.|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999875 5679999999999999999
Q ss_pred HHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHH
Q 011100 147 QFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL 226 (493)
Q Consensus 147 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~ 226 (493)
.+..++...++.+..++|+.....+...+ ..++|+|+||+++..++... ...+.++++||+||||++.++++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHH-TTCSEEEECHHHHHHHHHTT---SCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhc-CCCCEEEECHHHHHHHHHcC---CcchhhCcEEEEEChHHhhccccHHHH
Confidence 99999888899999999998876665554 45899999999999988765 344678899999999999999999999
Q ss_pred HHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCe
Q 011100 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRS 306 (493)
Q Consensus 227 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 306 (493)
..++...+...+++++|||++.............+..+... .....+.+.+..+....+.. . ..+.....++
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~ 222 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSK--V---QALRENKDKG 222 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHH--H---HHHHTCCCSS
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHH--H---HHHHhCCCCc
Confidence 99999999899999999999998888777776665544322 23344555555555443222 2 2233344578
Q ss_pred EEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCC
Q 011100 307 AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPR 386 (493)
Q Consensus 307 ~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~ 386 (493)
+||||++++.++.++..|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++.
T Consensus 223 ~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 298 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLR 298 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHH
T ss_pred EEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHH
Confidence 9999999999999998876 678999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccCCCCccEEEEEecccHHHHHHHHHHhc
Q 011100 387 DYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424 (493)
Q Consensus 387 ~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 424 (493)
.|+||+||+||.|++|.|++|+. .+...++.+++.++
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999 88888887776554
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.2e-53 Score=433.85 Aligned_cols=340 Identities=18% Similarity=0.239 Sum_probs=270.5
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 011100 63 AGLGLAEWAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELA 141 (493)
Q Consensus 63 ~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 141 (493)
.++++++.+.+.|+. +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. ..++|||+|+++|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L~ 97 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISLM 97 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHHH
Confidence 458899999999998 79999999999999999999999999999999999999999763 45799999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCHHHHHHH------hcCCCcEEEECcchHH------HHHhcCCCCCCccCCcceE
Q 011100 142 YQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS------LMNRPHVVIATPGRIK------VLLEEDPDIPPVFSRTKFL 209 (493)
Q Consensus 142 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~Iiv~Tp~~l~------~~l~~~~~~~~~l~~~~~v 209 (493)
.|+.+.+..+ |+.+..+.|+......... ..+.++|+|+||++|. ..+.. ...+.++++|
T Consensus 98 ~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~----~~~~~~i~~i 169 (591)
T 2v1x_A 98 EDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK----AYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH----HHHTTCEEEE
T ss_pred HHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh----hhhccCCcEE
Confidence 9999999987 6888899998876544322 2467899999999874 22222 1235678999
Q ss_pred eeccccccccCC--CHHHHHH--HHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecC
Q 011100 210 VLDEADRVLDVG--FEEELRV--VFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPK 285 (493)
Q Consensus 210 ViDEah~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (493)
||||||++.+++ |...+.. ++....++.+++++|||+++.+.......+............. ...+ .|.....
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~-r~nl--~~~v~~~ 246 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN-RPNL--YYEVRQK 246 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC-CTTE--EEEEEEC
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC-Cccc--EEEEEeC
Confidence 999999999887 6555543 3333345789999999999877665544443322221111111 1222 2333322
Q ss_pred C-cchHHHHHHHHhhhh-cCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC
Q 011100 286 N-VKDVYLMHVLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363 (493)
Q Consensus 286 ~-~~~~~l~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 363 (493)
. .....+..++..+.. ....++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a 326 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA 326 (591)
T ss_dssp CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 2 233334444444432 13478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHH
Q 011100 364 ASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 364 ~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 419 (493)
+++|||+|++++||+|++|.|++.|+||+||+||.|.+|.|++|+.+.|...+..+
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887666544
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-54 Score=437.52 Aligned_cols=367 Identities=26% Similarity=0.388 Sum_probs=261.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
...|...++++++.+.+...|+..|+++|.++++.++++ +++++.+|||||||++|+++++..+.....+.++||++|
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P 197 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAP 197 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECS
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 445677789999999999999999999999999999998 899999999999999999999999887766778999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc
Q 011100 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 137 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~ 216 (493)
+++|+.|+++.+..++...++.+....++.... .....++|+|+||+++...+... ...+.++++||+||||+
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~---~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRR---QLDARDIKVFVLDEADN 270 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT---CSCCTTCCEEEECCHHH
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcC---CccccCCCEEEEechhh
Confidence 999999999999999887777766666554321 12347899999999999888765 34578899999999999
Q ss_pred ccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCC-cchHHHHH
Q 011100 217 VLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKN-VKDVYLMH 294 (493)
Q Consensus 217 ~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 294 (493)
+.+ .++...+..++..++.+.|++++|||+++.+..+.......+..+...........+.+.+...... .+...+..
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 350 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE 350 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHH
Confidence 887 6788999999999999999999999999989998888887777666555544555566666555332 23333333
Q ss_pred HHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 295 VLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 295 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
++. ....+++||||+++..++.++..|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 351 ll~---~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~ 427 (508)
T 3fho_A 351 LYG---LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVN 427 (508)
T ss_dssp HHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCC
T ss_pred HHH---hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCC
Confidence 333 33347899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCC------CCCCcceeeccccccCCCCccEEEEEe-cccHHHHHHHHHHhcCcccccccchH
Q 011100 375 LVLNYDIP------RYPRDYVHRVGRTARAGRGGLAVSFVT-QNDVDLIHEIEAVVGKQLEEFECKEQ 435 (493)
Q Consensus 375 ~Vi~~~~p------~s~~~y~qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (493)
+||++++| .++..|+||+||+||.|+.|.|++|+. ..+...+..+++.++..++.......
T Consensus 428 ~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~ 495 (508)
T 3fho_A 428 LVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDY 495 (508)
T ss_dssp EEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-------
T ss_pred EEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccH
Confidence 99999999 788999999999999999999999998 45677888999998888887765443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.8e-52 Score=424.52 Aligned_cols=340 Identities=21% Similarity=0.282 Sum_probs=272.5
Q ss_pred cccccCCCCHHHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 60 VTFAGLGLAEWAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
..|+++++++.+.+.|++ +|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. ...+|||+|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 468999999999999998 89999999999999999999999999999999999999999854 45799999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHH----HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccc
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK----SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEa 214 (493)
+|+.|+.+.+..+ ++.+..+.++........ ...+.++|+|+||+++....... .....++++||||||
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~---~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWNPVLLAVDEA 148 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSCEEEEEESSG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH---HHhhCCCCEEEEeCc
Confidence 9999999999886 688888888877544322 22467999999999984211100 011367889999999
Q ss_pred cccccCC--CHHHHHH---HHHhCCcCCceeeeeecccchHHH-HHH-HhcCCceEEeccccccccccceEEEEEecCCc
Q 011100 215 DRVLDVG--FEEELRV---VFQCLPKNRQTLLFSATMTSDLQT-LLE-LSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287 (493)
Q Consensus 215 h~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
|++.+++ |...+.. +...+ ++.+++++|||+++.... +.. +....+..+... .. .....+.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~---r~~l~~~v~~~~~ 222 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS--FD---RPNIRYMLMEKFK 222 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC--CC---CTTEEEEEEECSS
T ss_pred cccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC--CC---CCceEEEEEeCCC
Confidence 9999887 5555443 34444 368899999999986544 333 333344333211 11 1223344444444
Q ss_pred chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Q 011100 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367 (493)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 367 (493)
+...+..++.. ....++||||++++.++.++..|...++.+..+||+|++++|..+++.|++|+.+|||||+++++|
T Consensus 223 ~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 223 PLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp HHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred HHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 45555555543 234689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHH
Q 011100 368 LDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEA 421 (493)
Q Consensus 368 idi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 421 (493)
||+|++++||+|++|+|.+.|+||+||+||.|.+|.|++|+++.|...++.+..
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988776665543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=8.8e-52 Score=413.16 Aligned_cols=348 Identities=22% Similarity=0.262 Sum_probs=274.1
Q ss_pred HHHHHHHH-cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 011100 70 WAVQTCKE-LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 70 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
.+.+.+++ +|+ +|+|+|.++++.+++|+|+++.+|||||||++|+++++..+.. +.++||++||++|+.|+++.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC---CCEEEEEECCHHHHHHHHHHH
Confidence 44555655 577 6999999999999999999999999999999999998887644 678999999999999999999
Q ss_pred HHhccCCCceEEEEEcCCCH---HHHHHHhcC-CCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc-----
Q 011100 149 KALGSGLHLRCEVVVGGMDL---LTQAKSLMN-RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD----- 219 (493)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~----- 219 (493)
..++. .++++..++|+... ..+...+.. .++|+|+||+++.+++.. ..+.++++||+||||++.+
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhhccchh
Confidence 99988 78999999999987 444444444 499999999999887764 2356889999999987653
Q ss_pred ------CCCHHH-HHHHHHhCC-----------cCCceeeeeec-ccchHH-HHHHHhcCCceEEeccccccccccceEE
Q 011100 220 ------VGFEEE-LRVVFQCLP-----------KNRQTLLFSAT-MTSDLQ-TLLELSANKAYFYEAYEGFKTVETLKQQ 279 (493)
Q Consensus 220 ------~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (493)
.+|... +..++..++ ...|++++||| .+..+. .+...... +...........+.+.
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhe
Confidence 667777 778887765 78899999999 554433 22222222 1112222334445555
Q ss_pred EEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCcee-eccCCCCHHHHHHHHHHhhcCCCeEE
Q 011100 280 YIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV-ALHSFKSQSQRLSALHRFKSGQATIL 358 (493)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vl 358 (493)
+... .+...+..++.. .+ +++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+++||
T Consensus 235 ~~~~---~~~~~l~~~l~~---~~-~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEI---FR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EESS---CCHHHHHHHHHH---HC-SSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eecc---CHHHHHHHHHHH---cC-CCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 5433 355556666655 22 6899999999999999999999999998 99984 444 999999999999
Q ss_pred EE----cCCCCCCCCCCC-cCeEEEecCC--CCCCcceeeccccccCC----CCccEEEEEecccHHHHHHHHHHhc--C
Q 011100 359 LA----TDVASRGLDIPT-VDLVLNYDIP--RYPRDYVHRVGRTARAG----RGGLAVSFVTQNDVDLIHEIEAVVG--K 425 (493)
Q Consensus 359 v~----T~~~~~Gidi~~-v~~Vi~~~~p--~s~~~y~qr~GR~gR~g----~~g~~~~~~~~~~~~~~~~~~~~~~--~ 425 (493)
|| |+++++|+|+|+ +++||+||+| .+..+|+||+||+||.| ..|.+++|+ ++...+..+++.++ .
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~ 379 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIA 379 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccc
Confidence 99 999999999999 9999999999 99999999999999988 478999998 77788888888888 6
Q ss_pred cccccccchHHHHHHHHHHHH
Q 011100 426 QLEEFECKEQEVLSDITRVYK 446 (493)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ 446 (493)
.++.......++...+.+...
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~ 400 (414)
T 3oiy_A 380 EEEIIEEAEANWKELVHEVEE 400 (414)
T ss_dssp CCCEEEGGGCCHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHH
Confidence 666655555554444444333
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-50 Score=439.65 Aligned_cols=332 Identities=18% Similarity=0.210 Sum_probs=264.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
.|+.+++++.+...+...++..|+++|.++++.+..|+++|++||||||||++|++|++..+.. +.++||++||++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraL 239 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKAL 239 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHH
Confidence 5666777776666666666677999999999999999999999999999999999999998866 6789999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC
Q 011100 141 AYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220 (493)
Q Consensus 141 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~ 220 (493)
+.|+++.+..++. .+..++|+.. ....++|+|+||++|..++... ...+.++++|||||||++.++
T Consensus 240 a~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~---~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 240 SNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp HHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHC---SSHHHHEEEEEEETGGGTTSH
T ss_pred HHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcC---ccccccCCEEEEhhhhhcccc
Confidence 9999999999875 5677888876 3467899999999999998876 345788999999999999999
Q ss_pred CCHHHHHHHHHhCCcCCceeeeeecccchH--HHHHHHhcCCceEEeccccccccccceEEEEE---------ecCCc--
Q 011100 221 GFEEELRVVFQCLPKNRQTLLFSATMTSDL--QTLLELSANKAYFYEAYEGFKTVETLKQQYIF---------IPKNV-- 287 (493)
Q Consensus 221 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-- 287 (493)
+++..+..++..++...|+++||||+++.. ..+.......+..+..... .+..+.+.+.. +....
T Consensus 306 ~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~vd~~~~~ 383 (1108)
T 3l9o_A 306 ERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTF 383 (1108)
T ss_dssp HHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEEEETTSSCCEEEEETTTEE
T ss_pred chHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEeecCCcceeeeeccccch
Confidence 999999999999999999999999998753 3555544444333222211 11112222111 00000
Q ss_pred -----------------------------------------chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh
Q 011100 288 -----------------------------------------KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326 (493)
Q Consensus 288 -----------------------------------------~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~ 326 (493)
....+..++..+...+..++||||+++..|+.++..|..
T Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~ 463 (1108)
T 3l9o_A 384 REENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK 463 (1108)
T ss_dssp CHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCS
T ss_pred hhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHh
Confidence 033445566666666667999999999999999998865
Q ss_pred cCCc---------------------------------------eeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Q 011100 327 LDQE---------------------------------------AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367 (493)
Q Consensus 327 ~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 367 (493)
.++. +..+||+|++.+|..++..|++|.++|||||+++++|
T Consensus 464 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~G 543 (1108)
T 3l9o_A 464 LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIG 543 (1108)
T ss_dssp HHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSC
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcC
Confidence 4332 6889999999999999999999999999999999999
Q ss_pred CCCCCcCeEEEecCCCCCC--------cceeeccccccCC--CCccEEEEEecc
Q 011100 368 LDIPTVDLVLNYDIPRYPR--------DYVHRVGRTARAG--RGGLAVSFVTQN 411 (493)
Q Consensus 368 idi~~v~~Vi~~~~p~s~~--------~y~qr~GR~gR~g--~~g~~~~~~~~~ 411 (493)
||+|++++||+++.|++.. +|+||+|||||.| ..|.|++++.+.
T Consensus 544 IDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 544 LNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999988766555 4999999999999 578888888765
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.9e-49 Score=417.78 Aligned_cols=349 Identities=21% Similarity=0.278 Sum_probs=273.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
+|+++++++++.+.++.+||..|+++|.++++. +.+++++++++|||||||++|.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 589999999999999999999999999999998 88999999999999999999999999887732 568999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc
Q 011100 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~ 219 (493)
|+.|+++.+..+. .+|+++..++|+...... ....++|+|+||+++..++... ...++++++|||||+|++.+
T Consensus 80 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~---~~~l~~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 80 LAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG---SSWIKDVKILVADEIHLIGS 152 (720)
T ss_dssp GHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT---CTTGGGEEEEEEETGGGGGC
T ss_pred HHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC---hhhhhcCCEEEEECCcccCC
Confidence 9999999996544 458899999997654221 2347899999999999988875 33478899999999999998
Q ss_pred CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEE-----EecC------Ccc
Q 011100 220 VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYI-----FIPK------NVK 288 (493)
Q Consensus 220 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~ 288 (493)
.+++..+..++..++.+.|++++|||+++ ...+....... .+. .... +..+...+. .... ...
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~-~~~---~~~r-p~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAE-LIV---SDWR-PVKLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEE-EEE---CCCC-SSEEEEEEEETTEEEETTSCEEECSST
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCc-ccC---CCCC-CCcceEEEEeCCeeeccccchhhhhHH
Confidence 88999999999888778999999999986 34454443221 111 1111 111111111 1111 112
Q ss_pred hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC---------------------------------Cceeecc
Q 011100 289 DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD---------------------------------QEAVALH 335 (493)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~ 335 (493)
...+...+ .. .+++||||++++.++.++..|.+.. ..+..+|
T Consensus 227 ~~~~~~~~----~~-~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 227 EELVYDAI----RK-KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp THHHHHHH----HT-TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHH----hC-CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 22222222 22 3789999999999999999987531 2488999
Q ss_pred CCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----ec----CCCCCCcceeeccccccCCC--CccEE
Q 011100 336 SFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----YD----IPRYPRDYVHRVGRTARAGR--GGLAV 405 (493)
Q Consensus 336 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~----~p~s~~~y~qr~GR~gR~g~--~g~~~ 405 (493)
|+|+.++|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|. .|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 76 68899999999999999984 68899
Q ss_pred EEEecccHHHHHHHHHHhcCcccccc
Q 011100 406 SFVTQNDVDLIHEIEAVVGKQLEEFE 431 (493)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (493)
++++..+.. ..+++.+....+...
T Consensus 382 ~l~~~~~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 382 IVSTSDDPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp EECSSSCHH--HHHHHHTTSCCCCCC
T ss_pred EEecCccHH--HHHHHHhcCCCCCcE
Confidence 999988733 223344444444433
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.2e-48 Score=411.24 Aligned_cols=336 Identities=20% Similarity=0.281 Sum_probs=263.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
.+|+++++++++.+.++.+||..|+++|.++++. +.++++++++||||||||+++.++++..+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5699999999999999999999999999999999 78899999999999999999999999887743 56899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
+|+.|+++.++.+ ..+|+++..++|+...... ....++|+|+||+++..++... ...++++++|||||+|++.
T Consensus 86 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~---~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 86 ALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHR---PEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp HHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHC---CGGGGGEEEEEECSGGGGG
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCC---hhHhhccCEEEEechhhcC
Confidence 9999999999544 4458899999998764322 2247899999999999988875 3347899999999999998
Q ss_pred cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEE-----------EEecCC-
Q 011100 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQY-----------IFIPKN- 286 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~- 286 (493)
+..++..++.++..++ +.|+++||||+++ ...+....... .+.. ... +..+...+ ......
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~~-~~~~---~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGAE-PVAT---NWR-PVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTCE-EEEC---CCC-SSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCCC-ccCC---CCC-CCCceEEEEecCCcccceeeecCcch
Confidence 8889999988887776 8899999999986 34444444321 1111 111 11111111 111110
Q ss_pred cc----hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcC----------------------------------
Q 011100 287 VK----DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELD---------------------------------- 328 (493)
Q Consensus 287 ~~----~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~---------------------------------- 328 (493)
.+ .......+...... .+++||||++++.++.++..|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~-~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSLSK-NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEEEESSSHHHHHHHHHHTT-TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHhc-CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 00 12223333332233 3799999999999999999998642
Q ss_pred --CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----ec-------CCCCCCcceeecccc
Q 011100 329 --QEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----YD-------IPRYPRDYVHRVGRT 395 (493)
Q Consensus 329 --~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~-------~p~s~~~y~qr~GR~ 395 (493)
..+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24889999999999999999999999999999999999999999999999 98 899999999999999
Q ss_pred ccCCC--CccEEEEEeccc
Q 011100 396 ARAGR--GGLAVSFVTQND 412 (493)
Q Consensus 396 gR~g~--~g~~~~~~~~~~ 412 (493)
||.|. .|.|+.+++..+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 99884 789999998765
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.5e-47 Score=394.84 Aligned_cols=334 Identities=20% Similarity=0.197 Sum_probs=227.9
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC--CeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
+|+|+|.++++.++.++++++++|||+|||++|++|+++.+...+. +.++|||+||++|+.|+.+.+..++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999999999998877542 66799999999999999999999998889999
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH-HHHHHHHHh-C----
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE-EELRVVFQC-L---- 233 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~-~~~~~i~~~-~---- 233 (493)
..++|+.....+...+..+++|+|+||+++..++.... ...+.++++|||||||++.+.+.. ..+...+.. +
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999986655555555678999999999999887652 125788999999999999876532 222233322 1
Q ss_pred CcCCceeeeeecccch--------HHHHHHH--hcCCceEEeccccc----cccccceEEEEEec---------------
Q 011100 234 PKNRQTLLFSATMTSD--------LQTLLEL--SANKAYFYEAYEGF----KTVETLKQQYIFIP--------------- 284 (493)
Q Consensus 234 ~~~~~~i~~SAT~~~~--------~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------------- 284 (493)
....+++++|||++.. ...+... .+....+....... .........+..+.
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 2457899999999642 1222111 11111111111000 00000011111111
Q ss_pred --------------------------------------------------------------------------------
Q 011100 285 -------------------------------------------------------------------------------- 284 (493)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (493)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred -----------------------------------------------CCcchHHHHHHHHhhh-hcCCCeEEEEecchhh
Q 011100 285 -----------------------------------------------KNVKDVYLMHVLSKME-DMGIRSAIIFVSTCRS 316 (493)
Q Consensus 285 -----------------------------------------------~~~~~~~l~~~~~~~~-~~~~~~~lVf~~~~~~ 316 (493)
...+...+..++.... .....++||||+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 0112223333333221 2234799999999999
Q ss_pred HHHHHHHHHhcC------------CceeeccCCCCHHHHHHHHHHhhc-CCCeEEEEcCCCCCCCCCCCcCeEEEecCCC
Q 011100 317 CHLLSLLLEELD------------QEAVALHSFKSQSQRLSALHRFKS-GQATILLATDVASRGLDIPTVDLVLNYDIPR 383 (493)
Q Consensus 317 ~~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~ 383 (493)
++.++..|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999999864 344556779999999999999999 9999999999999999999999999999999
Q ss_pred CCCcceeeccccccCCCCccEEEEEecccHHHHHHH
Q 011100 384 YPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 384 s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 419 (493)
|+..|+||+|| ||. ..|.+++|+++.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 998 89999999998876544433
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4e-48 Score=412.11 Aligned_cols=344 Identities=20% Similarity=0.189 Sum_probs=220.3
Q ss_pred HHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC--CeEEEEEcccHHHHHHHHHHHH
Q 011100 72 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 72 ~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
.+++..+|+..|+++|.++++.++.|+++|+++|||+|||++|++|+++.+...+. +.++|||+||++|+.|+.+.+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999988876532 2689999999999999999999
Q ss_pred HhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH-HHHHH
Q 011100 150 ALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE-EELRV 228 (493)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~-~~~~~ 228 (493)
+++...++++..++|+.....+...+...++|+|+||++|...+.... ...+.++++|||||||++.+.... ..+..
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999888999999999876544444445679999999999999987652 114788999999999998865422 22222
Q ss_pred HHHh-----CCcCCceeeeeecccc--------hHHHHHHHhc--C-------------------CceEE-eccccccc-
Q 011100 229 VFQC-----LPKNRQTLLFSATMTS--------DLQTLLELSA--N-------------------KAYFY-EAYEGFKT- 272 (493)
Q Consensus 229 i~~~-----~~~~~~~i~~SAT~~~--------~~~~~~~~~~--~-------------------~~~~~-~~~~~~~~- 272 (493)
.+.. .+..++++++|||+.. .+..+..... + .+... ........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 2457899999999971 2222322211 0 00000 00000000
Q ss_pred -----------------------c--------------------------------------------------------
Q 011100 273 -----------------------V-------------------------------------------------------- 273 (493)
Q Consensus 273 -----------------------~-------------------------------------------------------- 273 (493)
+
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred ------------------------------ccceEEEEE-------------e---cCCcchHHHHHHHHhhh-hcCCCe
Q 011100 274 ------------------------------ETLKQQYIF-------------I---PKNVKDVYLMHVLSKME-DMGIRS 306 (493)
Q Consensus 274 ------------------------------~~~~~~~~~-------------~---~~~~~~~~l~~~~~~~~-~~~~~~ 306 (493)
..+.+.+.. . ....+...+..++.... .....+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 000000000 0 01223333444444332 123468
Q ss_pred EEEEecchhhHHHHHHHHHhcC----Cceeec--------cCCCCHHHHHHHHHHhhc-CCCeEEEEcCCCCCCCCCCCc
Q 011100 307 AIIFVSTCRSCHLLSLLLEELD----QEAVAL--------HSFKSQSQRLSALHRFKS-GQATILLATDVASRGLDIPTV 373 (493)
Q Consensus 307 ~lVf~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~v 373 (493)
+||||+++..++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 788888 569999999999999998 999999999999999999999
Q ss_pred CeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHH
Q 011100 374 DLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 374 ~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 419 (493)
++||+||+|+++..|+||+|| ||. ..|.++.+++.++......+
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999 998 78999999998876554444
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=8.4e-49 Score=415.98 Aligned_cols=336 Identities=20% Similarity=0.312 Sum_probs=263.1
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 61 TFAGLG--LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 61 ~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
+|++++ +++++.+.++.+||.+|+++|.++++.+.++++++++||||||||+++.++++..+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 578888 9999999999999999999999999999999999999999999999999999988775 56899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 139 ELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 139 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
+|+.|+++.++.+ ...|+++..++|+...... ....++|+|+||+++..++... ...++++++||+||+|++.
T Consensus 79 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~---~~~l~~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 79 ALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR---ASWIKAVSCLVVDEIHLLD 151 (702)
T ss_dssp HHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT---CSGGGGCCEEEETTGGGGG
T ss_pred HHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC---hhHHhhcCEEEEeeeeecC
Confidence 9999999999544 4558999999998754321 2347899999999999988875 3347899999999999999
Q ss_pred cCCCHHHHHHHHHhC---CcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEE------EecCCc--
Q 011100 219 DVGFEEELRVVFQCL---PKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYI------FIPKNV-- 287 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-- 287 (493)
+++++..+..++..+ .++.|+++||||+++ ...+..... ...+.. ... +..+...+. ......
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~~~~~---~~r-~~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD-ADYYVS---DWR-PVPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT-CEEEEC---CCC-SSCEEEEEECSSEEEEEETTEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC-CCcccC---CCC-CccceEEEeeCCeeeccCcchhh
Confidence 988888888776655 468999999999986 455555443 222111 111 111111111 111111
Q ss_pred -chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc------------------------------CCceeeccC
Q 011100 288 -KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL------------------------------DQEAVALHS 336 (493)
Q Consensus 288 -~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~ 336 (493)
+......++...... .+++||||++++.++.++..|.+. +..+..+||
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 226 SRRVKFEELVEECVAE-NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp EEECCHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhhhHHHHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 000022222222223 378999999999999999988753 135788999
Q ss_pred CCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----ec---CCCCCCcceeeccccccCC--CCccEEEE
Q 011100 337 FKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----YD---IPRYPRDYVHRVGRTARAG--RGGLAVSF 407 (493)
Q Consensus 337 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~---~p~s~~~y~qr~GR~gR~g--~~g~~~~~ 407 (493)
+|+.++|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| ..|.|+.+
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999 66 7889999999999999998 47899999
Q ss_pred EecccH
Q 011100 408 VTQNDV 413 (493)
Q Consensus 408 ~~~~~~ 413 (493)
++..+.
T Consensus 385 ~~~~~~ 390 (702)
T 2p6r_A 385 VGKRDR 390 (702)
T ss_dssp CCGGGH
T ss_pred ecCccH
Confidence 998873
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.2e-47 Score=418.82 Aligned_cols=346 Identities=22% Similarity=0.270 Sum_probs=268.4
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
.+|| +|+++|.++++.+++|+|++++||||||||++|+++++..+.. +.++||++||++|+.|+++.+..++ ..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~---~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 3688 5999999999999999999999999999999998888887744 6789999999999999999999977 778
Q ss_pred ceEEEEEcCCCH---HHHHHHhcC-CCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc-----------CC
Q 011100 157 LRCEVVVGGMDL---LTQAKSLMN-RPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD-----------VG 221 (493)
Q Consensus 157 ~~~~~~~g~~~~---~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~-----------~~ 221 (493)
+++..++|+.+. ..+...+.. .++|+|+||++|.+++.. ..+.++++|||||||++.. ++
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 999999999886 455555554 499999999999887764 3357899999999986553 77
Q ss_pred CHHH-HHHHHHhCC-----------cCCceeeeeec-ccchHHH-HHHHhcCCceEEeccccccccccceEEEEEecCCc
Q 011100 222 FEEE-LRVVFQCLP-----------KNRQTLLFSAT-MTSDLQT-LLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNV 287 (493)
Q Consensus 222 ~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
|... +..++..++ .+.|+++|||| .+..+.. +...... +.+.........+.+.+..+ .
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~ 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---R 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---C
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---C
Confidence 7777 888888776 78999999999 5554432 2222222 22222333445556665544 3
Q ss_pred chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCcee-eccCCCCHHHHHHHHHHhhcCCCeEEEE----cC
Q 011100 288 KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV-ALHSFKSQSQRLSALHRFKSGQATILLA----TD 362 (493)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T~ 362 (493)
+...+..++... + +++||||+++..++.++..|...++.+. .+|| +|.. ++.|++|+.+|||| |+
T Consensus 297 k~~~L~~ll~~~---~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 297 SKEKLVELLEIF---R-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp CHHHHHHHHHHH---C-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred HHHHHHHHHHhc---C-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 556666666652 2 7899999999999999999999999998 9999 2555 99999999999999 99
Q ss_pred CCCCCCCCCC-cCeEEEecCCC----------------------------------------------------------
Q 011100 363 VASRGLDIPT-VDLVLNYDIPR---------------------------------------------------------- 383 (493)
Q Consensus 363 ~~~~Gidi~~-v~~Vi~~~~p~---------------------------------------------------------- 383 (493)
++++|||+|+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CCCcceeeccccccCCCCc--cEEEEEecccHHHHHHHHHHhc--CcccccccchHHHHHHHHHHH
Q 011100 384 --------------YPRDYVHRVGRTARAGRGG--LAVSFVTQNDVDLIHEIEAVVG--KQLEEFECKEQEVLSDITRVY 445 (493)
Q Consensus 384 --------------s~~~y~qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 445 (493)
++.+|+||+||+||.|..| .+++++..+|...+..+++.++ ..++..+....++-+.+..+.
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 526 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVE 526 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCHHHHHHHHh
Confidence 5668999999999976543 4555555588888888888775 334433333333333334443
Q ss_pred HHHH
Q 011100 446 KARR 449 (493)
Q Consensus 446 ~~~~ 449 (493)
..++
T Consensus 527 ~~r~ 530 (1104)
T 4ddu_A 527 ESRR 530 (1104)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 26
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3e-47 Score=395.42 Aligned_cols=332 Identities=18% Similarity=0.188 Sum_probs=199.7
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC--CeEEEEEcccHHHHHHHHHHHHHhccCC
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSGL 155 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 155 (493)
++..+|+|+|.++++.++.++++++++|||+|||++|++|+++.+...+. +.++|||+||++|+.|+.+.+..++...
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34557999999999999999999999999999999999999998876542 5679999999999999999999999888
Q ss_pred CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHH-HHHHh--
Q 011100 156 HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELR-VVFQC-- 232 (493)
Q Consensus 156 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~-~i~~~-- 232 (493)
++++..++|+.........+..+++|+|+||++|..++.... ...+.++++|||||||++.+++....+. ..+..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 899999999987665555555679999999999999887652 1257889999999999998876433331 22221
Q ss_pred --CCcCCceeeeeecccch-----------HHHHHHHhcCCceEEeccccc----cccccceEEEEEec-----------
Q 011100 233 --LPKNRQTLLFSATMTSD-----------LQTLLELSANKAYFYEAYEGF----KTVETLKQQYIFIP----------- 284 (493)
Q Consensus 233 --~~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------- 284 (493)
..+..+++++|||++.. +..+.... ....+....... .........+....
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 13568999999999531 11111111 111111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011100 285 -------------------------------------------------------------------------------- 284 (493)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (493)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------CCcchHHHHHHHHhhh-hcCCCeEEEEecc
Q 011100 285 --------------------------------------------------KNVKDVYLMHVLSKME-DMGIRSAIIFVST 313 (493)
Q Consensus 285 --------------------------------------------------~~~~~~~l~~~~~~~~-~~~~~~~lVf~~~ 313 (493)
...+...+..++.... .....++||||++
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~ 399 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 399 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 0112222333332221 1344799999999
Q ss_pred hhhHHHHHHHHHhc------------CCceeeccCCCCHHHHHHHHHHhhc-CCCeEEEEcCCCCCCCCCCCcCeEEEec
Q 011100 314 CRSCHLLSLLLEEL------------DQEAVALHSFKSQSQRLSALHRFKS-GQATILLATDVASRGLDIPTVDLVLNYD 380 (493)
Q Consensus 314 ~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~v~~Vi~~~ 380 (493)
+..++.++..|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 400 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 400 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 479 (556)
T ss_dssp HHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEET
T ss_pred HHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999876 4555667888999999999999999 9999999999999999999999999999
Q ss_pred CCCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 381 IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 381 ~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
+|+|+..|+||+|| ||. .+|.+++|++..+..
T Consensus 480 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 480 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99999999999999 998 889999999987654
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-47 Score=413.09 Aligned_cols=323 Identities=18% Similarity=0.239 Sum_probs=258.1
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
.++|. |+++|.++++.+.+++++++++|||||||++|.++++..+.. +.++||++|+++|+.|+++.+..++.
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 46776 999999999999999999999999999999999999988765 67899999999999999999999875
Q ss_pred ceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcC
Q 011100 157 LRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKN 236 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~ 236 (493)
.+..++|+... ...++|+|+||++|..++... ...+.++++|||||||++.+.+++..+..++..++..
T Consensus 155 -~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~---~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 -DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp -CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHT---CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred -CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcC---cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 67778887653 346899999999999988776 3457899999999999999999999999999999999
Q ss_pred CceeeeeecccchHH--HHHHHhcCCceEEeccccccccccceEEEEEec---------CCc------------------
Q 011100 237 RQTLLFSATMTSDLQ--TLLELSANKAYFYEAYEGFKTVETLKQQYIFIP---------KNV------------------ 287 (493)
Q Consensus 237 ~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------ 287 (493)
.|++++|||+++..+ .++......+..+.... ..+..+.+.+.... ...
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI 301 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC--CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhh
Confidence 999999999987543 33332223232222111 11122333222111 000
Q ss_pred -----------------c--------hHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCc------------
Q 011100 288 -----------------K--------DVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE------------ 330 (493)
Q Consensus 288 -----------------~--------~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~------------ 330 (493)
+ ...+..++..+...+..++||||+++..|+.++..|...++.
T Consensus 302 ~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~ 381 (1010)
T 2xgj_A 302 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIF 381 (1010)
T ss_dssp ---------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 0 223444555555555568999999999999999998775432
Q ss_pred ---------------------------eeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----e
Q 011100 331 ---------------------------AVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----Y 379 (493)
Q Consensus 331 ---------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~ 379 (493)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |
T Consensus 382 ~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kf 461 (1010)
T 2xgj_A 382 NNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKW 461 (1010)
T ss_dssp HHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEE
T ss_pred HHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCccc
Confidence 678999999999999999999999999999999999999999999999 9
Q ss_pred cC----CCCCCcceeeccccccCCC--CccEEEEEecc-cHHHHHHH
Q 011100 380 DI----PRYPRDYVHRVGRTARAGR--GGLAVSFVTQN-DVDLIHEI 419 (493)
Q Consensus 380 ~~----p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~-~~~~~~~~ 419 (493)
|. |.++.+|+||+||+||.|. .|.|++++++. +...+..+
T Consensus 462 d~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 462 DGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 98 8999999999999999997 49999999866 44444443
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.5e-47 Score=393.87 Aligned_cols=326 Identities=20% Similarity=0.203 Sum_probs=249.1
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
.+|+ +|+++|..+++.+++|+ |+.++||+|||++|.+|++..... +..++||+||++||.|.++++..++..+|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 5899 89999999999999998 999999999999999999855444 55799999999999999999999999999
Q ss_pred ceEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCC---CCCccCCcceEeeccccccc-cCC----------
Q 011100 157 LRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPD---IPPVFSRTKFLVLDEADRVL-DVG---------- 221 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~vViDEah~~~-~~~---------- 221 (493)
+++.+++||.+...+.. ..+++|+|+||++| .+++..... ....++.+.++||||||+|+ +.+
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 99999999988654433 34689999999999 566554321 12456889999999999988 654
Q ss_pred -----CHHHHHHHHHhCC---------cCCcee-----------------eeeecccchHHHHH---HH--hc--CCceE
Q 011100 222 -----FEEELRVVFQCLP---------KNRQTL-----------------LFSATMTSDLQTLL---EL--SA--NKAYF 263 (493)
Q Consensus 222 -----~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~~---~~--~~--~~~~~ 263 (493)
|...+..++..++ +.+|++ ++|||.+.....+. .. .. +..+.
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 5678888998887 367887 89999874332222 11 11 11111
Q ss_pred Ee------cc-----------------------------ccccccccce-------------------------------
Q 011100 264 YE------AY-----------------------------EGFKTVETLK------------------------------- 277 (493)
Q Consensus 264 ~~------~~-----------------------------~~~~~~~~~~------------------------------- 277 (493)
+. +. ........+.
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 00 00 0000000000
Q ss_pred ----------------EEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHH
Q 011100 278 ----------------QQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341 (493)
Q Consensus 278 ----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 341 (493)
..++......+...+...+......+ .++||||+|++.++.++..|...|+.+.++||++.+.
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~-~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~r 469 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTG-QPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER 469 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHH
Confidence 01222233334444555554433333 6899999999999999999999999999999999888
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCCCCCCCCC--------CcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 342 QRLSALHRFKSGQATILLATDVASRGLDIP--------TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 342 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~--------~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
+|..+...|+.| .|+||||+++||+|++ ++.+||+|+.|.+...|+||+||+||+|.+|.+++|++.+|.
T Consensus 470 Er~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 470 EAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 887666566555 6999999999999999 788999999999999999999999999999999999998763
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.9e-46 Score=400.34 Aligned_cols=333 Identities=18% Similarity=0.187 Sum_probs=207.4
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC--CeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
.+|+..|+|+|.++++.++.|+++++++|||+|||++|++|++..+...+. +.++|||+|+++|+.|+.+.+..++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 368899999999999999999999999999999999999999999877542 668999999999999999999999988
Q ss_pred CCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHH-HHHHHh-
Q 011100 155 LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEEL-RVVFQC- 232 (493)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~-~~i~~~- 232 (493)
.++++..++|+.........+..+++|+|+||++|...+.... ...+.++++|||||||++.+.+....+ ..++..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8899999999987666566666789999999999999887652 125788999999999998876533222 222222
Q ss_pred ---CCcCCceeeeeecccc-----------hHHHHHHHhcCCceEEecccccc----ccccceEEEEEec----------
Q 011100 233 ---LPKNRQTLLFSATMTS-----------DLQTLLELSANKAYFYEAYEGFK----TVETLKQQYIFIP---------- 284 (493)
Q Consensus 233 ---~~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------- 284 (493)
..+..+++++|||+.. .+..+.... ....+........ ........+..+.
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L-~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhc-CCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1456899999999953 122222111 1111111000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011100 285 -------------------------------------------------------------------------------- 284 (493)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (493)
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ---------------------------------------------------CCcchHHHHHHHHh-hhhcCCCeEEEEec
Q 011100 285 ---------------------------------------------------KNVKDVYLMHVLSK-MEDMGIRSAIIFVS 312 (493)
Q Consensus 285 ---------------------------------------------------~~~~~~~l~~~~~~-~~~~~~~~~lVf~~ 312 (493)
...+...+..++.. +......++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 01122222333322 12234479999999
Q ss_pred chhhHHHHHHHHHhc------------CCceeeccCCCCHHHHHHHHHHhhc-CCCeEEEEcCCCCCCCCCCCcCeEEEe
Q 011100 313 TCRSCHLLSLLLEEL------------DQEAVALHSFKSQSQRLSALHRFKS-GQATILLATDVASRGLDIPTVDLVLNY 379 (493)
Q Consensus 313 ~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 379 (493)
++..++.++..|+.. |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999874 5566678999999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 380 ~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
|+|+|+..|+||+|| ||. +.|.+++|++..+..
T Consensus 720 d~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999 998 889999999887654
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.6e-47 Score=415.41 Aligned_cols=324 Identities=21% Similarity=0.263 Sum_probs=257.1
Q ss_pred HHHH-HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 73 QTCK-ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 73 ~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
+.+. .+||. | ++|.++++.+++|+|++++||||||||+ |.+|++..+... +.++|||+||++|+.|+++.+..+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 4444 48999 9 9999999999999999999999999998 888988877653 678999999999999999999999
Q ss_pred ccCCCc----eEEEEEcCCCHHHH---HHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHH
Q 011100 152 GSGLHL----RCEVVVGGMDLLTQ---AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224 (493)
Q Consensus 152 ~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~ 224 (493)
+...++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.. ++++++|||||||++++ ++.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l~--~~~ 192 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAILK--ASK 192 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHHT--STH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhhh--ccc
Confidence 988888 89999999887653 333444 99999999999887654 56889999999999998 568
Q ss_pred HHHHHHHhCC-----------cCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHH
Q 011100 225 ELRVVFQCLP-----------KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM 293 (493)
Q Consensus 225 ~~~~i~~~~~-----------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (493)
.+..++..++ ...|++++|||++.. ..+.......+..+.+.........+.+.+. ...+...+.
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~ 268 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLS 268 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTH
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHH
Confidence 8888887773 567899999999876 3222211111111222222223344555444 344555556
Q ss_pred HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEE----cCCCCCCCC
Q 011100 294 HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLA----TDVASRGLD 369 (493)
Q Consensus 294 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gid 369 (493)
.++... .+++||||++++.|+.++..|+.. +.+..+||++. .+++.|++|+.+|||| |+++++|||
T Consensus 269 ~ll~~~----~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGID 338 (1054)
T 1gku_B 269 SILEKL----GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLD 338 (1054)
T ss_dssp HHHTTS----CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSC
T ss_pred HHHhhc----CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccc
Confidence 666543 368999999999999999999988 99999999983 6789999999999999 999999999
Q ss_pred CCCc-CeEEEecCC------------------------------------------------------------------
Q 011100 370 IPTV-DLVLNYDIP------------------------------------------------------------------ 382 (493)
Q Consensus 370 i~~v-~~Vi~~~~p------------------------------------------------------------------ 382 (493)
+|+| ++||++|+|
T Consensus 339 ip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 418 (1054)
T 1gku_B 339 LPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 418 (1054)
T ss_dssp CTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEET
T ss_pred cCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEee
Confidence 9996 999999999
Q ss_pred -----CCCCcceeeccccccCCCCc--cEEEEEecccHHHHHHHHHHhcC
Q 011100 383 -----RYPRDYVHRVGRTARAGRGG--LAVSFVTQNDVDLIHEIEAVVGK 425 (493)
Q Consensus 383 -----~s~~~y~qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~~~~~~~~ 425 (493)
.+..+|+||+||+||.|..| .+++++..++...+..+++.++.
T Consensus 419 ~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 419 GEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68889999999999988876 58999988899999999888774
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.5e-45 Score=399.14 Aligned_cols=323 Identities=18% Similarity=0.241 Sum_probs=246.8
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
++|. |+++|.++++.+++|+++++.+|||||||++|++++...+.. +.++||++|+++|+.|+++.+..++. ++
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 5666 899999999999999999999999999999999999887665 67899999999999999999998764 57
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
.+..++|+... ...++|+|+||++|..++... ...+.++++|||||||++.+++++..+..++..++.+.
T Consensus 110 ~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~---~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG---ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT---CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC---chhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 88889998653 356899999999999988766 34578899999999999999999999999999999999
Q ss_pred ceeeeeecccchHHH--HHHHhcCCceEEeccccccccccceEEEEE-------ecC-----------------------
Q 011100 238 QTLLFSATMTSDLQT--LLELSANKAYFYEAYEGFKTVETLKQQYIF-------IPK----------------------- 285 (493)
Q Consensus 238 ~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------------- 285 (493)
|++++|||+++..+. +............... . .+..+.+.+.. +..
T Consensus 180 ~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~-~-r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 180 KFILLSATVPNTYEFANWIGRTKQKNIYVISTP-K-RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTCCEEEEECS-S-CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred CEEEEcCCCCChHHHHHHHhcccCCceEEEecC-C-CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 999999999875432 2222221221111111 0 01111111100 000
Q ss_pred ------------------------------------------------------------CcchHHHHHHHHhhhhcCCC
Q 011100 286 ------------------------------------------------------------NVKDVYLMHVLSKMEDMGIR 305 (493)
Q Consensus 286 ------------------------------------------------------------~~~~~~l~~~~~~~~~~~~~ 305 (493)
......+..++..+...+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~ 337 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELL 337 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHTTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCC
Confidence 00112234455555555567
Q ss_pred eEEEEecchhhHHHHHHHHHhcCC---------------------------------------ceeeccCCCCHHHHHHH
Q 011100 306 SAIIFVSTCRSCHLLSLLLEELDQ---------------------------------------EAVALHSFKSQSQRLSA 346 (493)
Q Consensus 306 ~~lVf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~ 346 (493)
++||||++++.|+.++..|...++ .+..+||+|++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999977655 47899999999999999
Q ss_pred HHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCC---------CCCcceeeccccccCCC--CccEEEEEe--cccH
Q 011100 347 LHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPR---------YPRDYVHRVGRTARAGR--GGLAVSFVT--QNDV 413 (493)
Q Consensus 347 ~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~---------s~~~y~qr~GR~gR~g~--~g~~~~~~~--~~~~ 413 (493)
+..|++|.++|||||+++++|||+|+ ..||+++.|+ ++.+|+||+|||||.|. .|.|++++. ..+.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~ 496 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSI 496 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCH
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchH
Confidence 99999999999999999999999999 5555545444 89999999999999984 566777773 2344
Q ss_pred HHHHHH
Q 011100 414 DLIHEI 419 (493)
Q Consensus 414 ~~~~~~ 419 (493)
..+..+
T Consensus 497 ~~~~~~ 502 (997)
T 4a4z_A 497 ATFKEV 502 (997)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.3e-45 Score=396.91 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=206.0
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC--CeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
-.|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+...+. +.++|||+||++|+.|+++.+..++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 457888999999999999999999999999999999999999988876532 567999999999999999999999988
Q ss_pred CCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHH-HHHHHHh-
Q 011100 155 LHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE-LRVVFQC- 232 (493)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~-~~~i~~~- 232 (493)
.++++..++|+.....+...+..+++|+|+||++|..++.... ...+.++++|||||||++.+.+.... +..++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8999999999986655444555678999999999999887652 12467899999999999887653222 2222222
Q ss_pred ---CCcCCceeeeeecccc-----------hHHHHHHHhcCCceEEeccccc----cccccceEEEEEec----------
Q 011100 233 ---LPKNRQTLLFSATMTS-----------DLQTLLELSANKAYFYEAYEGF----KTVETLKQQYIFIP---------- 284 (493)
Q Consensus 233 ---~~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------- 284 (493)
.....+++++|||+.. .+..+.... ....+....... .........+..+.
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L-~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc-CCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1456889999999952 111221111 111111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011100 285 -------------------------------------------------------------------------------- 284 (493)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (493)
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ---------------------------------------------------CCcchHHHHHHHHhhh-hcCCCeEEEEec
Q 011100 285 ---------------------------------------------------KNVKDVYLMHVLSKME-DMGIRSAIIFVS 312 (493)
Q Consensus 285 ---------------------------------------------------~~~~~~~l~~~~~~~~-~~~~~~~lVf~~ 312 (493)
...+...+..++.... .....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0111112222332211 133479999999
Q ss_pred chhhHHHHHHHHHhc------------CCceeeccCCCCHHHHHHHHHHhhc-CCCeEEEEcCCCCCCCCCCCcCeEEEe
Q 011100 313 TCRSCHLLSLLLEEL------------DQEAVALHSFKSQSQRLSALHRFKS-GQATILLATDVASRGLDIPTVDLVLNY 379 (493)
Q Consensus 313 ~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 379 (493)
++..++.++.+|... |.....+||+|+..+|..+++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999986 5556677999999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 380 DIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 380 ~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
|+|+|+..|+||+|| ||. ..|.++.|++..+..
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999 998 889999999887654
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-45 Score=416.07 Aligned_cols=344 Identities=16% Similarity=0.261 Sum_probs=260.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhhc-CCcEEEEccCCCCchhHhHHHHHHHhhcC--------CCCeEEEEEccc
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILE-GKDVLGLAQTGSGKTAAFALPILHRLAED--------PYGVLALVITPT 137 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKTl~~~l~~l~~l~~~--------~~~~~~lil~Pt 137 (493)
|+++...++ .||++|+++|.++++.++. ++|++++||||||||++|.+++++.+.+. ..+.++||++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 555555443 3899999999999998775 68899999999999999999999998652 236789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++||+|+++.|.+.+..+|++|..++|+.....+ ....++|+|+|||++..++++... ...++++++|||||+|.+
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~-~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGE-RTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTT-HHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCcc-chhhcCcCEEEEecchhc
Confidence 9999999999999999999999999998764322 234689999999998777765432 234789999999999977
Q ss_pred ccCCCHHHHHHHHHh-------CCcCCceeeeeecccchHHHHHHHhcCCc--eEEeccccccccccceEEEEEecCCcc
Q 011100 218 LDVGFEEELRVVFQC-------LPKNRQTLLFSATMTSDLQTLLELSANKA--YFYEAYEGFKTVETLKQQYIFIPKNVK 288 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (493)
.+ .++..++.++.+ .+...|++++|||+++ .+.+..+....+ ..+.....+ .+..+.+.++.......
T Consensus 220 ~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~-RPvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 220 HD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF-RPVPLEQTYVGITEKKA 296 (1724)
T ss_dssp GS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG-CSSCEEEECCEECCCCH
T ss_pred CC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC-ccCccEEEEeccCCcch
Confidence 65 577777766543 4578899999999986 444444432221 111122222 33445665555554433
Q ss_pred hHHH---HHHH-Hhh-hhcCCCeEEEEecchhhHHHHHHHHHhc------------------------------------
Q 011100 289 DVYL---MHVL-SKM-EDMGIRSAIIFVSTCRSCHLLSLLLEEL------------------------------------ 327 (493)
Q Consensus 289 ~~~l---~~~~-~~~-~~~~~~~~lVf~~~~~~~~~l~~~l~~~------------------------------------ 327 (493)
.... ...+ ..+ .....+++||||++++.|+.++..|.+.
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (1724)
T 4f92_B 297 IKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDL 376 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHH
Confidence 2221 1111 111 2223468999999999999998887642
Q ss_pred -CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----ec------CCCCCCcceeeccccc
Q 011100 328 -DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----YD------IPRYPRDYVHRVGRTA 396 (493)
Q Consensus 328 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~------~p~s~~~y~qr~GR~g 396 (493)
...+++|||+|++++|..+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|.||+||||
T Consensus 377 l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 377 LPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp TTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred hhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 234788999999999999999999999999999999999999999999985 44 3567889999999999
Q ss_pred cCCC--CccEEEEEecccHHHHHHH
Q 011100 397 RAGR--GGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 397 R~g~--~g~~~~~~~~~~~~~~~~~ 419 (493)
|.|. .|.+++++.+++...+..+
T Consensus 457 R~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 457 RPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp CTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCCCccEEEEEecchhHHHHHHH
Confidence 9885 6899999998887666554
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-44 Score=368.18 Aligned_cols=325 Identities=23% Similarity=0.247 Sum_probs=247.1
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEV 161 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 161 (493)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.||.+++.+++...+..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 5999999999999999 99999999999999999999887762 26679999999999999999999997544558889
Q ss_pred EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceee
Q 011100 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241 (493)
Q Consensus 162 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 241 (493)
++|+........ ....++|+|+||+.+...+... ...+.++++||+||||++.+......+...+.......++++
T Consensus 86 ~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 86 LTGEKSPEERSK-AWARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp ECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEE
T ss_pred eeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEE
Confidence 999887654433 3346899999999999888764 345678999999999999876545555555555567889999
Q ss_pred eeecccchHHHH---HHHhcCCceEEeccccccc---cccceEEEEEe--------------------------------
Q 011100 242 FSATMTSDLQTL---LELSANKAYFYEAYEGFKT---VETLKQQYIFI-------------------------------- 283 (493)
Q Consensus 242 ~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------------------------- 283 (493)
+|||+.+....+ ................... .......+...
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999998644433 3322211111100000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011100 284 -------------------------------------------------------------------------------- 283 (493)
Q Consensus 284 -------------------------------------------------------------------------------- 283 (493)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------cCCcchHHHHHHHHhhhh-cCCCeEEEEecchhhHHHHHHHHHhcCCceeeccC--------
Q 011100 284 ------------------PKNVKDVYLMHVLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHS-------- 336 (493)
Q Consensus 284 ------------------~~~~~~~~l~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~-------- 336 (493)
....+...+..++..... ....++||||+++..++.++..|...++.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 111122333344433221 24579999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHH
Q 011100 337 FKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVD 414 (493)
Q Consensus 337 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~ 414 (493)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++.|+.+++.+
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999988654
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=392.98 Aligned_cols=324 Identities=20% Similarity=0.220 Sum_probs=224.1
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC---CCeEEEEEcccHHHHHHH-HHHHHHhccCCCc
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP---YGVLALVITPTRELAYQL-AEQFKALGSGLHL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~---~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~ 157 (493)
.|+++|.++++.+++|+++++.+|||+|||++|++|++..+.... .+.++|||+|+++|+.|+ .+.+..++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 599999999999999999999999999999999999998876532 126799999999999999 9999998865 58
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCC---CCCCccCCcceEeeccccccccCC-CHHHHHHHHHh-
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDP---DIPPVFSRTKFLVLDEADRVLDVG-FEEELRVVFQC- 232 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~l~~~~~vViDEah~~~~~~-~~~~~~~i~~~- 232 (493)
++..++|+.........+...++|+|+||++|...+.... .....+..+++|||||||++.... +...+...+..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 8999999876544444455789999999999998874321 113456889999999999986543 32333322221
Q ss_pred ---C---------CcCCceeeeeecccch-----------HHHHHHHhcCCceEEecccc---c-cccccceEEEEEec-
Q 011100 233 ---L---------PKNRQTLLFSATMTSD-----------LQTLLELSANKAYFYEAYEG---F-KTVETLKQQYIFIP- 284 (493)
Q Consensus 233 ---~---------~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~- 284 (493)
. .+.++++++|||+... +..+.......... ..... . .........+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~-~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIK-TVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCC-CCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEE-eecCchHHHhhhcCCCceEEEEccc
Confidence 1 1567899999999862 22222222110000 00000 0 00000011111111
Q ss_pred --------------------------------------------------------------------------------
Q 011100 285 -------------------------------------------------------------------------------- 284 (493)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (493)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------CCcchHHHHHHHHh-hhhcC-CCeEE
Q 011100 285 ------------------------------------------------------KNVKDVYLMHVLSK-MEDMG-IRSAI 308 (493)
Q Consensus 285 ------------------------------------------------------~~~~~~~l~~~~~~-~~~~~-~~~~l 308 (493)
...+...+..++.. +...+ ..++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 00111112222322 22222 47899
Q ss_pred EEecchhhHHHHHHHHHhc------CCceeeccCC--------CCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcC
Q 011100 309 IFVSTCRSCHLLSLLLEEL------DQEAVALHSF--------KSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVD 374 (493)
Q Consensus 309 Vf~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 374 (493)
|||++++.++.++..|... |+.+..+||+ |+..+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccccccCCCCccEEEEEec
Q 011100 375 LVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 375 ~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
+||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 9999999999999999999976654 55555544
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-45 Score=383.51 Aligned_cols=327 Identities=20% Similarity=0.211 Sum_probs=243.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhhhhhhcC------CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 69 EWAVQTCKELGMRRPTPVQTHCIPKILEG------KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 69 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
..+.+.+..+|| .||++|.++++.++++ ++++++||||||||++|++|++..+.. +.+++|++||++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 455566678999 7999999999998875 589999999999999999999998876 678999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCHHHHHH---Hh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 143 QLAEQFKALGSGLHLRCEVVVGGMDLLTQAK---SL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 143 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
|+++.+.+++..+++++..++|+........ .+ .+.++|+|+||+.+.. ...+.++++||+||+|++.
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE--------DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH--------CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh--------hhhccCCceEEecccchhh
Confidence 9999999999888999999999987655432 22 3469999999987743 1236788999999999953
Q ss_pred cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHh
Q 011100 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSK 298 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (493)
. .....+......+++++||||+.+...............+.... .....+. ....+ ......+...+..
T Consensus 504 ~-----~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p--~~r~~i~--~~~~~-~~~~~~l~~~i~~ 573 (780)
T 1gm5_A 504 V-----KQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMP--PGRKEVQ--TMLVP-MDRVNEVYEFVRQ 573 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCC--SSCCCCE--ECCCC-SSTHHHHHHHHHH
T ss_pred H-----HHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccC--CCCcceE--EEEec-cchHHHHHHHHHH
Confidence 2 12222333345789999999987755443322211111111100 0011111 11222 2233334444443
Q ss_pred hhhcCCCeEEEEecch--------hhHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Q 011100 299 MEDMGIRSAIIFVSTC--------RSCHLLSLLLEE---LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRG 367 (493)
Q Consensus 299 ~~~~~~~~~lVf~~~~--------~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 367 (493)
....+ ++++|||+++ ..++.+++.|.. .+..+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 574 ~l~~g-~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~G 652 (780)
T 1gm5_A 574 EVMRG-GQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVG 652 (780)
T ss_dssp HTTTS-CCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSC
T ss_pred HHhcC-CcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcc
Confidence 33333 6899999976 457788888887 36789999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEEecCCC-CCCcceeeccccccCCCCccEEEEEecccHHHHHH
Q 011100 368 LDIPTVDLVLNYDIPR-YPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHE 418 (493)
Q Consensus 368 idi~~v~~Vi~~~~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 418 (493)
+|+|++++||++++|. +...|.||+||+||.|..|.|++++.+.+......
T Consensus 653 IDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~r 704 (780)
T 1gm5_A 653 IDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMER 704 (780)
T ss_dssp SCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHH
Confidence 9999999999999996 57788899999999999999999998544433333
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.9e-45 Score=374.17 Aligned_cols=325 Identities=19% Similarity=0.186 Sum_probs=226.1
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|. +|+++|..+++.+++|+ ++.++||+|||++|++|++..... +..++|++||++||.|.++.+..++..+|+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 676 69999999999999998 999999999999999999865554 567999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCCC---CCccCCcceEeeccccccc-cCC-----------
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPDI---PPVFSRTKFLVLDEADRVL-DVG----------- 221 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~---~~~l~~~~~vViDEah~~~-~~~----------- 221 (493)
++.+++||.+.... ....+++|+|+||++| .+++...... ...++.+.++|+||||+|+ +.+
T Consensus 145 ~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999886433 3334689999999999 6777654211 2456889999999999998 443
Q ss_pred ----CHHHHHHHHHhCCc--------------------CCcee------------------------eeeecccchHHHH
Q 011100 222 ----FEEELRVVFQCLPK--------------------NRQTL------------------------LFSATMTSDLQTL 253 (493)
Q Consensus 222 ----~~~~~~~i~~~~~~--------------------~~~~i------------------------~~SAT~~~~~~~~ 253 (493)
|...+..++..++. .+|++ ++|||.+.....+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 45667777777753 44543 8899975421111
Q ss_pred HH------HhcCC--------------------------------c----eEEeccccccccccce--------------
Q 011100 254 LE------LSANK--------------------------------A----YFYEAYEGFKTVETLK-------------- 277 (493)
Q Consensus 254 ~~------~~~~~--------------------------------~----~~~~~~~~~~~~~~~~-------------- 277 (493)
.. ++... + ..+.+.....+...+.
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 00 00000 0 0000000000000000
Q ss_pred ---------------------------------EEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHH
Q 011100 278 ---------------------------------QQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLL 324 (493)
Q Consensus 278 ---------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l 324 (493)
..++......+...+...+......+ .++||||+|+..++.++..|
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~g-qpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKG-QPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTT-CCEEEEESSHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCC-CCEEEEECcHHHHHHHHHHH
Confidence 01222333334445555554433333 68999999999999999999
Q ss_pred HhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc-------------------------------
Q 011100 325 EELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTV------------------------------- 373 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v------------------------------- 373 (493)
...|+.+.++||++...++..+..+|+.| .|+||||+++||+||+..
T Consensus 462 ~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (853)
T 2fsf_A 462 TKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDA 539 (853)
T ss_dssp HHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhH
Confidence 99999999999999888888888888888 699999999999999873
Q ss_pred ------CeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 374 ------DLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 374 ------~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
.+||+|+.|.|...|.||+||+||+|.+|.+++|++.+|.
T Consensus 540 V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 540 VLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999998773
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.2e-44 Score=401.01 Aligned_cols=344 Identities=17% Similarity=0.206 Sum_probs=262.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC-CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQTHCIPKILEG-KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
|.....+++...+|..|+|+|.++++.++.+ ++++++||||||||++|.+++++.+.+.+ +.++||++|+++||.|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 4566777787789999999999999999764 67999999999999999999999998754 557999999999999999
Q ss_pred HHHHHh-ccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHH
Q 011100 146 EQFKAL-GSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224 (493)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~ 224 (493)
+.+.+. ...+|+++..++|+...... ...+++|+|+|||++..++++... ...++++++||+||+|++.+. ++.
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~-~~~l~~v~lvViDE~H~l~d~-rg~ 1064 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQ-RKNVQNINLFVVDEVHLIGGE-NGP 1064 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTT-CHHHHSCSEEEECCGGGGGST-THH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCccc-ccccceeeEEEeechhhcCCC-CCc
Confidence 999764 45679999999998654322 234689999999999888776533 345789999999999988764 666
Q ss_pred HHHHHHH-------hCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHH----
Q 011100 225 ELRVVFQ-------CLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLM---- 293 (493)
Q Consensus 225 ~~~~i~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 293 (493)
.++.++. ..+.+.|++++|||+++..+-..++.......+......+ +..+...+...........+.
T Consensus 1065 ~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R-PvpL~~~i~~~~~~~~~~~~~~~~~ 1143 (1724)
T 4f92_B 1065 VLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR-PVPLELHIQGFNISHTQTRLLSMAK 1143 (1724)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC-SSCEEEEEEEECCCSHHHHHHTTHH
T ss_pred cHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCC-CCCeEEEEEeccCCCchhhhhhhcc
Confidence 6655543 3467889999999998743333333333333333333332 334455444444333322221
Q ss_pred ---HHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc----------------------------------CCceeeccC
Q 011100 294 ---HVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL----------------------------------DQEAVALHS 336 (493)
Q Consensus 294 ---~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~ 336 (493)
..+.. ....+++||||++++.|+.++..|... ...++.+||
T Consensus 1144 ~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1144 PVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred hHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 12222 223468999999999999888766431 234788999
Q ss_pred CCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE----------ecCCCCCCcceeeccccccCCC--CccE
Q 011100 337 FKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN----------YDIPRYPRDYVHRVGRTARAGR--GGLA 404 (493)
Q Consensus 337 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----------~~~p~s~~~y~qr~GR~gR~g~--~g~~ 404 (493)
+|++.+|..+++.|++|.++|||||+++++|||+|...+||. ...|.++.+|+||+|||||.|. .|.|
T Consensus 1222 gL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp TSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999999984 2346678899999999999997 6899
Q ss_pred EEEEecccHHHHHHH
Q 011100 405 VSFVTQNDVDLIHEI 419 (493)
Q Consensus 405 ~~~~~~~~~~~~~~~ 419 (493)
++++...+...+..+
T Consensus 1302 vll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEGGGHHHHHHH
T ss_pred EEEecchHHHHHHHH
Confidence 999998887766554
No 39
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.8e-44 Score=366.47 Aligned_cols=326 Identities=20% Similarity=0.213 Sum_probs=250.4
Q ss_pred HcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCC
Q 011100 77 ELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLH 156 (493)
Q Consensus 77 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 156 (493)
.+|+ +|+++|..+++.+++|+ |+.++||+|||++|.+|++..... +..++||+||++||.|.++++..++..+|
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4798 89999999999999998 999999999999999999765544 45799999999999999999999999999
Q ss_pred ceEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCC---CCCccCCcceEeeccccccc-cC-----------
Q 011100 157 LRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPD---IPPVFSRTKFLVLDEADRVL-DV----------- 220 (493)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~~~~~vViDEah~~~-~~----------- 220 (493)
+++.+++||.+...... ...++|+|+||++| .+++..... ....++.+.++||||||+|+ +.
T Consensus 181 Lsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 99999999988643333 34689999999998 677765421 12456789999999999998 42
Q ss_pred ----CCHHHHHHHHHhCC---------cCCcee-----------------eeeecccchHHHH---HH---HhcCC-ceE
Q 011100 221 ----GFEEELRVVFQCLP---------KNRQTL-----------------LFSATMTSDLQTL---LE---LSANK-AYF 263 (493)
Q Consensus 221 ----~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~---~~---~~~~~-~~~ 263 (493)
+|...+..++..++ +.+|++ ++|||.+.....+ +. ++... .++
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 46788899999997 678888 9999987533322 11 11111 111
Q ss_pred Ee------ccc-----------------------------cccccccce-------------------------------
Q 011100 264 YE------AYE-----------------------------GFKTVETLK------------------------------- 277 (493)
Q Consensus 264 ~~------~~~-----------------------------~~~~~~~~~------------------------------- 277 (493)
+. +.. ...+...+.
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 00 000 000000000
Q ss_pred ----------------EEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHH
Q 011100 278 ----------------QQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQS 341 (493)
Q Consensus 278 ----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 341 (493)
..++......+...+...+......+ .++||||+|++.++.++..|...|+.+.++||++...
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~g-qpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKG-QPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 01122222334444555554433333 6899999999999999999999999999999998877
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc------------------------------------------------
Q 011100 342 QRLSALHRFKSGQATILLATDVASRGLDIPTV------------------------------------------------ 373 (493)
Q Consensus 342 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v------------------------------------------------ 373 (493)
++..+...|+.| .|+|||++++||+||+..
T Consensus 498 Ea~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 575 (922)
T 1nkt_A 498 EATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVI 575 (922)
T ss_dssp HHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777777788777 699999999999999965
Q ss_pred ----CeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 374 ----DLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 374 ----~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
.+||+|+.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 576 ~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 576 EAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998874
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.2e-42 Score=378.49 Aligned_cols=322 Identities=16% Similarity=0.140 Sum_probs=249.6
Q ss_pred CCHHHHHHH-HHcCCCCCcHHHHhhhhhhhc----CC--cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 67 LAEWAVQTC-KELGMRRPTPVQTHCIPKILE----GK--DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 67 l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~----~~--~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.+....+.+ ..++|. +||+|.++++.+++ ++ ++++++|||+|||++++++++..+.. +.+++|++||++
T Consensus 588 ~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTL 663 (1151)
T ss_dssp CCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHH
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHH
Confidence 334444444 346886 79999999999886 65 89999999999999999998887665 668999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHH---Hh-cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 140 LAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAK---SL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
|+.|+++.+.+++..+++++..+++......... .+ .+.++|+|+||+.+. . ...+.++++|||||+|
T Consensus 664 La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~----~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S----DVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S----CCCCSSEEEEEEESGG
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C----CccccccceEEEechH
Confidence 9999999999998888899999988776544332 22 346999999997653 2 2346889999999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHH
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHV 295 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (493)
++ +.....++..++.+.++++||||+++...............+.... .....+...+ .. .........+
T Consensus 736 ~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~~~~--~~-~~~~~i~~~i 805 (1151)
T 2eyq_A 736 RF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVKTFV--RE-YDSMVVREAI 805 (1151)
T ss_dssp GS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEEEEE--EE-CCHHHHHHHH
T ss_pred hc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccEEEE--ec-CCHHHHHHHH
Confidence 93 4555666666677889999999998766555444333322221111 1111122222 11 1223334444
Q ss_pred HHhhhhcCCCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCc
Q 011100 296 LSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTV 373 (493)
Q Consensus 296 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 373 (493)
+..+.. .++++|||++++.++.++..|++. +..+..+||+|++.+|..++..|++|+++|||||+++++|+|+|++
T Consensus 806 l~~l~~--g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v 883 (1151)
T 2eyq_A 806 LREILR--GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 883 (1151)
T ss_dssp HHHHTT--TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTE
T ss_pred HHHHhc--CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCC
Confidence 444433 378999999999999999999988 7889999999999999999999999999999999999999999999
Q ss_pred CeEEEecC-CCCCCcceeeccccccCCCCccEEEEEeccc
Q 011100 374 DLVLNYDI-PRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412 (493)
Q Consensus 374 ~~Vi~~~~-p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~ 412 (493)
++||+++. +++...|+||+||+||.|+.|.|++++.+++
T Consensus 884 ~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 884 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999988 4688899999999999999999999987654
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.5e-43 Score=363.09 Aligned_cols=311 Identities=15% Similarity=0.131 Sum_probs=235.7
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEE
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCE 160 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 160 (493)
.+|+++|.++++.+++++++++++|||+|||+++++++...+... +.++|||+|+++|+.|+.+.+.++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 379999999999999999999999999999999999998877653 348999999999999999999988665567888
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCcee
Q 011100 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240 (493)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 240 (493)
.++|+.....+ .....+|+|+||+.+... . ...+.++++|||||+|++.+ ..+..++..++...+++
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~---~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---P---KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---C---GGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhhc---h---hhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 88888765333 446789999999975432 1 23467889999999999865 56777788887888999
Q ss_pred eeeecccchHHH---HHHHhcCCceEEecccc------ccccccceEEEEEecC---------C------------cchH
Q 011100 241 LFSATMTSDLQT---LLELSANKAYFYEAYEG------FKTVETLKQQYIFIPK---------N------------VKDV 290 (493)
Q Consensus 241 ~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~------------~~~~ 290 (493)
++|||+++.... +..... +..+..... ......+.......+. . .+..
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFG--EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHC--SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhC--CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 999999765322 222221 111111110 0000011111111110 0 1112
Q ss_pred HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEc-CCCCCCCC
Q 011100 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT-DVASRGLD 369 (493)
Q Consensus 291 ~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gid 369 (493)
.+..++......+..++||||+ .+.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 2333444433334456666666 889999999999998899999999999999999999999999999999 99999999
Q ss_pred CCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEe
Q 011100 370 IPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVT 409 (493)
Q Consensus 370 i~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~ 409 (493)
+|++++||++++|+++..|+||+||+||.|+.|.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999875555554
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.2e-43 Score=366.22 Aligned_cols=314 Identities=17% Similarity=0.150 Sum_probs=231.2
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 011100 65 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQL 144 (493)
Q Consensus 65 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 144 (493)
+++++.+.+++... ...++|+|+.+++.+++++++++++|||||||++|++|+++.+... +.++||++||++||.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 55666665555433 4788999999999999999999999999999999999999887763 56899999999999999
Q ss_pred HHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHH
Q 011100 145 AEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEE 224 (493)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~ 224 (493)
++.+.. ..+. ..+.... .....+..+.++|.+.+...+... ..+.++++|||||||++ +.++..
T Consensus 232 ~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~ 295 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVA 295 (618)
T ss_dssp HHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEEEESTTCC-SHHHHH
T ss_pred HHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc----ccccCCeEEEEECCCCC-CccHHH
Confidence 987762 2332 2221100 011233456677877776655543 23788999999999998 666777
Q ss_pred HHHHHHHhCC-cCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcC
Q 011100 225 ELRVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMG 303 (493)
Q Consensus 225 ~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (493)
.+..++..++ .+.|+++||||++..+..+.. ..+..+.+... .+..... .+...+. ..
T Consensus 296 ~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~~~~~-~ll~~l~---~~- 354 (618)
T 2whx_A 296 ARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPERSWN-TGFDWIT---DY- 354 (618)
T ss_dssp HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCSSCCS-SSCHHHH---HC-
T ss_pred HHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCHHHHH-HHHHHHH---hC-
Confidence 7777777765 678999999999876442221 11111111111 1111111 1112221 22
Q ss_pred CCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeE-------
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV------- 376 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V------- 376 (493)
.+++||||++++.++.++..|+..++.+..+||. +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 3689999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred -------------EEecCCCCCCcceeeccccccCCC-CccEEEEEe---cccHHHHHHHHHHh
Q 011100 377 -------------LNYDIPRYPRDYVHRVGRTARAGR-GGLAVSFVT---QNDVDLIHEIEAVV 423 (493)
Q Consensus 377 -------------i~~~~p~s~~~y~qr~GR~gR~g~-~g~~~~~~~---~~~~~~~~~~~~~~ 423 (493)
|+|+.|.+.++|+||+||+||.|. .|.|++|++ +.|...+..++..+
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 778889999999999999999975 899999997 77777777777654
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.6e-42 Score=347.85 Aligned_cols=287 Identities=16% Similarity=0.172 Sum_probs=212.3
Q ss_pred CCCCCcHHHHhhhhhhhcCCcE-EEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 79 GMRRPTPVQTHCIPKILEGKDV-LGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 79 g~~~~~~~Q~~~i~~i~~~~~~-lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
|+.+++|+|+ +++.+++++++ ++++|||||||++|++|++..+... +.++||++||++|+.|+++.+. ++
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6889999985 89999999886 9999999999999999999876653 5689999999999999998774 23
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHH-hCCcC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQ-CLPKN 236 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~-~~~~~ 236 (493)
.+....+.... ....+..|.++|++.+...+... ..+.++++|||||||++ +..+...+..+.. ..+++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTS
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCC
Confidence 33222221110 12345679999999988877654 34788999999999987 3333333333322 23457
Q ss_pred CceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhh
Q 011100 237 RQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRS 316 (493)
Q Consensus 237 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~ 316 (493)
.|+++||||++.....+ ............. .+.. ....+...+. .. .+++||||++++.
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-------------~p~~-~~~~~~~~l~---~~-~~~~lVF~~s~~~ 200 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIERE-------------IPER-SWNTGFDWIT---DY-QGKTVWFVPSIKA 200 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECC-------------CCSS-CCSSSCHHHH---HC-CSCEEEECSSHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCcc-------------CCch-hhHHHHHHHH---hC-CCCEEEEcCCHHH
Confidence 89999999998644322 1111111111100 0000 0000111221 22 3689999999999
Q ss_pred HHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEec----------------
Q 011100 317 CHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYD---------------- 380 (493)
Q Consensus 317 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~---------------- 380 (493)
++.++..|+..++.+..+|+.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 201 a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~ 275 (451)
T 2jlq_A 201 GNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVI 275 (451)
T ss_dssp HHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceee
Confidence 99999999999999999999764 56899999999999999999999999999 9999998
Q ss_pred ----CCCCCCcceeeccccccCCC-CccEEEEEec
Q 011100 381 ----IPRYPRDYVHRVGRTARAGR-GGLAVSFVTQ 410 (493)
Q Consensus 381 ----~p~s~~~y~qr~GR~gR~g~-~g~~~~~~~~ 410 (493)
.|.+..+|+||+||+||.|. .|.|++|+..
T Consensus 276 ~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 276 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888744
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.8e-42 Score=352.38 Aligned_cols=304 Identities=18% Similarity=0.160 Sum_probs=229.8
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEV 161 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 161 (493)
.++++|.++++.+.++++++++||||||||++|.++++.. +.++||++|||+||.|+++.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 4667777777778888999999999999999999998873 5689999999999999999887654 455666
Q ss_pred EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCc--e
Q 011100 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQ--T 239 (493)
Q Consensus 162 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~--~ 239 (493)
.+|+.. ...+.+|+|+||++|. ... ...++++++|||||||+ ++.++...+..++..++...+ +
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrLl---~~~---~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKFL---ADG---GCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHHH---HTT---SCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred EECcEe-------ccCCCCEEEECcHHHH---hCC---CcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceE
Confidence 777654 3567899999999973 332 34467899999999974 566788888889998887666 6
Q ss_pred eeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHH
Q 011100 240 LLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHL 319 (493)
Q Consensus 240 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~ 319 (493)
++||||++..+. ...+........... .. ........ +.....+++||||++++.++.
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~~~---~i---~~~~~~~~----------l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSNTG---EI---PFYGKAIP----------IEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBSCS---SE---EETTEEEC----------GGGSSSSEEEEECSCHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeecccc---hh---HHHHhhhh----------hhhccCCcEEEEeCCHHHHHH
Confidence 778999987321 111111111000000 00 00000000 112234799999999999999
Q ss_pred HHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEE----------Eec---------
Q 011100 320 LSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVL----------NYD--------- 380 (493)
Q Consensus 320 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi----------~~~--------- 380 (493)
+++.|++.++.+..+||+|++.+ |.++..+|||||+++++|||++ +++|| |||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999875 4556679999999999999996 99988 677
Q ss_pred --CCCCCCcceeeccccccCCCCccEEEEEecccHHH--H--HHHHHHhcCcccccccchHHHHHH
Q 011100 381 --IPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDL--I--HEIEAVVGKQLEEFECKEQEVLSD 440 (493)
Q Consensus 381 --~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~ 440 (493)
.|.+.++|+||+||+|| |..|. +.|+++.+... + ..+++..+..+.++..+..+....
T Consensus 484 ~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~~~~~ 547 (666)
T 3o8b_A 484 TTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVR 547 (666)
T ss_dssp EEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred ccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchHHHHH
Confidence 89999999999999999 99999 99999887655 4 677777777777776666554443
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.6e-41 Score=353.85 Aligned_cols=335 Identities=16% Similarity=0.139 Sum_probs=245.9
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhc-CCcEEEEccCCCCchhHhHHHHHHHh--hcCCCCeEEEEE
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILE-GKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVI 134 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKTl~~~l~~l~~l--~~~~~~~~~lil 134 (493)
...+|+++++++.+.+.+...+ ..|++.|+++++.++. +++++++||||||||+ ++|++... .....+.+++++
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 3567999999999999999988 6799999999988775 5679999999999999 35544222 122225679999
Q ss_pred cccHHHHHHHHHHHHHhc-cCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecc
Q 011100 135 TPTRELAYQLAEQFKALG-SGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDE 213 (493)
+|+++|+.|+++.+.... ...+..+........ .....++|+|+|||++...+... ..+.++++|||||
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDE 216 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED----HDLSRYSCIILDE 216 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECS
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC----ccccCCCEEEecC
Confidence 999999999998776543 222322222111111 11246899999999998877654 2478999999999
Q ss_pred ccc-cccCCC-HHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcch-H
Q 011100 214 ADR-VLDVGF-EEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKD-V 290 (493)
Q Consensus 214 ah~-~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 290 (493)
+|. .++..+ ...+..+.... ++.++++||||++. ..+...+...+.+ ..... ...+...|...+..... .
T Consensus 217 ah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~~~~~~~vi-~v~gr---~~pv~~~~~~~~~~~~~~~ 289 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQRYFNDAPLL-AVPGR---TYPVELYYTPEFQRDYLDS 289 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHHHTTSCCEE-ECCCC---CCCEEEECCSSCCSCHHHH
T ss_pred ccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHHHhcCCCcc-cccCc---ccceEEEEecCCchhHHHH
Confidence 995 555332 23344444443 57899999999964 4555555444433 22211 12233333333332222 2
Q ss_pred HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh-----------cCCceeeccCCCCHHHHHHHHHHhh-----cCC
Q 011100 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE-----------LDQEAVALHSFKSQSQRLSALHRFK-----SGQ 354 (493)
Q Consensus 291 ~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~ 354 (493)
.+..++........+++||||+++..++.++..|.+ .++.+..+||+|++.+|..+++.|+ +|.
T Consensus 290 ~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~ 369 (773)
T 2xau_A 290 AIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG 369 (773)
T ss_dssp HHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc
Confidence 233334433343458999999999999999999985 4778999999999999999999999 999
Q ss_pred CeEEEEcCCCCCCCCCCCcCeEEEecC------------------CCCCCcceeeccccccCCCCccEEEEEecccH
Q 011100 355 ATILLATDVASRGLDIPTVDLVLNYDI------------------PRYPRDYVHRVGRTARAGRGGLAVSFVTQNDV 413 (493)
Q Consensus 355 ~~vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~ 413 (493)
.+|||||+++++|||+|++++||++++ |.+..+|+||+|||||. .+|.|+.|+++.+.
T Consensus 370 ~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 370 RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred eEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999999999887 88999999999999998 88999999987664
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.2e-41 Score=340.37 Aligned_cols=292 Identities=20% Similarity=0.232 Sum_probs=216.7
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCce-EE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLR-CE 160 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~ 160 (493)
.|+|+|.++++.+++++++++++|||+|||++|+.++... +.++||++|+++|+.||.+.+..+ +++ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 5999999999999999999999999999999999988765 557999999999999999998884 678 88
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCcee
Q 011100 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240 (493)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 240 (493)
.++|+.. ...+|+|+||+.+...+... .+++++|||||||++.+..+.. ++..+ ...+++
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~------~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHHH------TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEE
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHHh------cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEE
Confidence 8888754 35799999999987766432 2457899999999999887654 44444 467899
Q ss_pred eeeecccch-------------------HHHHHHHhcCCceEEecccccc--------------------------cccc
Q 011100 241 LFSATMTSD-------------------LQTLLELSANKAYFYEAYEGFK--------------------------TVET 275 (493)
Q Consensus 241 ~~SAT~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~ 275 (493)
++|||+... ...+.................. ....
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 999999731 1111111111111100000000 0000
Q ss_pred ceEEE---------------------EEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeec
Q 011100 276 LKQQY---------------------IFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVAL 334 (493)
Q Consensus 276 ~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~ 334 (493)
....+ ..+....+...+..++.. ....++||||++.+.++.++..|. +..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~ 374 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL-----IPAI 374 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----CCBC
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC-----ccee
Confidence 00000 000111122333444433 334789999999999999999873 6789
Q ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCC-ccE--EEEEecc
Q 011100 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG-GLA--VSFVTQN 411 (493)
Q Consensus 335 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~-g~~--~~~~~~~ 411 (493)
||+++..+|..+++.|++|+++|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+. +.+ +.+++.+
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999965 454 4455544
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.3e-42 Score=343.14 Aligned_cols=282 Identities=20% Similarity=0.233 Sum_probs=196.3
Q ss_pred hhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHH
Q 011100 93 KILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA 172 (493)
Q Consensus 93 ~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 172 (493)
.+++|+|++++||||||||++|++|+++.+... +.+++|++||++||.|+++.+..+ + +....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccce-----
Confidence 467899999999999999999999999877654 568999999999999999887643 2 222111110
Q ss_pred HHhcCCCcEEEECcchHHHHHhcCC-----CCCCccCCcceEeeccccccccCCCHHHHHHHHHhC-CcCCceeeeeecc
Q 011100 173 KSLMNRPHVVIATPGRIKVLLEEDP-----DIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PKNRQTLLFSATM 246 (493)
Q Consensus 173 ~~~~~~~~Iiv~Tp~~l~~~l~~~~-----~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~ 246 (493)
.++||+++.+++.... .....+.++++||+||+|++ +.++...+..+.... +.+.|+++||||+
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATP 140 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ---------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCC
Confidence 3777776543322110 00233688999999999998 433333333333322 3578999999999
Q ss_pred cchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh
Q 011100 247 TSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE 326 (493)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~ 326 (493)
++.+..+... +.+ +......++.......+..+. .. .+++||||++++.++.++..|+.
T Consensus 141 ~~~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~l~----~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 141 PGTSDEFPHS--NGE--------------IEDVQTDIPSEPWNTGHDWIL----AD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp TTCCCSSCCC--SSC--------------EEEEECCCCSSCCSSSCHHHH----HC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred Cchhhhhhhc--CCC--------------eeEeeeccChHHHHHHHHHHH----hc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 8654322110 000 001111112211111122222 22 37899999999999999999999
Q ss_pred cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE-------------------ecCCCCCCc
Q 011100 327 LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN-------------------YDIPRYPRD 387 (493)
Q Consensus 327 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~-------------------~~~p~s~~~ 387 (493)
.++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688899999999999999999999999999 999986 899999999
Q ss_pred ceeeccccccC-CCCccEEEEE---ecccHHHHHHHHHHh
Q 011100 388 YVHRVGRTARA-GRGGLAVSFV---TQNDVDLIHEIEAVV 423 (493)
Q Consensus 388 y~qr~GR~gR~-g~~g~~~~~~---~~~~~~~~~~~~~~~ 423 (493)
|+||+||+||. |..|.|++|+ ++.+...+..++..+
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99999999997 6899999996 677777777776654
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2e-42 Score=359.28 Aligned_cols=306 Identities=16% Similarity=0.197 Sum_probs=211.0
Q ss_pred HHHHcCCC-----CCcHHHH-----hhhhhhh------cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 74 TCKELGMR-----RPTPVQT-----HCIPKIL------EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 74 ~l~~~g~~-----~~~~~Q~-----~~i~~i~------~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
++...||. .|+++|+ ++|+.++ +++|+++++|||||||++|++|++..+... +.++||++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 34445666 8999999 9999888 899999999999999999999999887653 5689999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++||.|+++.+..+ ++. ...+... .....+.-+-+.+.+.+...+... ..+.++++|||||||++
T Consensus 280 r~La~Q~~~~l~~~----~i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 280 RVVAAEMAEALRGL----PVR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP----LRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp HHHHHHHHHHTTTS----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS----SCCCCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHhcC----Cee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc----cccccceEEEEeCCccc
Confidence 99999999887644 222 1111000 000011112223333332222221 24788999999999997
Q ss_pred ccCCCHHHHHHHHHhCC-cCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHH
Q 011100 218 LDVGFEEELRVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVL 296 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (493)
+..+...+..+...++ ...|+++||||++..+..+... +.+ +......++.......+..+
T Consensus 345 -~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~--------------i~~v~~~~~~~~~~~~l~~l- 406 (673)
T 2wv9_A 345 -DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSP--------------VHDVSSEIPDRAWSSGFEWI- 406 (673)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSSCCHHH-
T ss_pred -CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCc--------------eEEEeeecCHHHHHHHHHHH-
Confidence 2222233333333332 5789999999998653221110 000 00000001111111111112
Q ss_pred HhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeE
Q 011100 297 SKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLV 376 (493)
Q Consensus 297 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~V 376 (493)
.. ..+++||||++++.++.++..|+..++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 407 ---~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 407 ---TD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp ---HS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred ---Hh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 22 24789999999999999999999999999999993 789999999999999999999999999999 9999
Q ss_pred EE--------------------ecCCCCCCcceeeccccccC-CCCccEEEEE---ecccHHHHHHHHHHh
Q 011100 377 LN--------------------YDIPRYPRDYVHRVGRTARA-GRGGLAVSFV---TQNDVDLIHEIEAVV 423 (493)
Q Consensus 377 i~--------------------~~~p~s~~~y~qr~GR~gR~-g~~g~~~~~~---~~~~~~~~~~~~~~~ 423 (493)
|+ |++|.+.++|+||+||+||. |+.|.|++|+ ++.+...+..++..+
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 98 56899999999999999999 7899999996 566766666665543
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6.6e-40 Score=329.39 Aligned_cols=273 Identities=15% Similarity=0.178 Sum_probs=194.7
Q ss_pred hhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHH
Q 011100 91 IPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLT 170 (493)
Q Consensus 91 i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 170 (493)
...+.+++++++++|||||||++|++|++..+... +.++||++||++|+.|+++.+. |..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR-- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc--
Confidence 44566789999999999999999999999887653 5689999999999999998876 2333222221110
Q ss_pred HHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc-----ccCCCHHHHHHHHHhCCcCCceeeeeec
Q 011100 171 QAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV-----LDVGFEEELRVVFQCLPKNRQTLLFSAT 245 (493)
Q Consensus 171 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~-----~~~~~~~~~~~i~~~~~~~~~~i~~SAT 245 (493)
.-..+..+.++|.+.+...+... ..+.++++|||||||++ ...++.... . ...+.|+++||||
T Consensus 85 ---~~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il~SAT 152 (459)
T 2z83_A 85 ---EHQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIFMTAT 152 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEEECSS
T ss_pred ---CCCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEEEEcC
Confidence 01234567788888877666543 34788999999999983 222222111 1 1357899999999
Q ss_pred ccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHH
Q 011100 246 MTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLE 325 (493)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~ 325 (493)
++..+..+... +.+... .. ..++..... .+...+.. . .+++||||+++..++.++..|+
T Consensus 153 ~~~~~~~~~~~--~~pi~~-~~-------------~~~~~~~~~-~~~~~l~~---~-~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 153 PPGTTDPFPDS--NAPIHD-LQ-------------DEIPDRAWS-SGYEWITE---Y-AGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp CTTCCCSSCCC--SSCEEE-EE-------------CCCCSSCCS-SCCHHHHH---C-CSCEEEECSCHHHHHHHHHHHH
T ss_pred CCcchhhhccC--CCCeEE-ec-------------ccCCcchhH-HHHHHHHh---c-CCCEEEEeCChHHHHHHHHHHH
Confidence 98653222110 111111 00 001111111 11122222 2 3789999999999999999999
Q ss_pred hcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEE--------------------ecCCCCC
Q 011100 326 ELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLN--------------------YDIPRYP 385 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--------------------~~~p~s~ 385 (493)
..++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.+.
T Consensus 212 ~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~ 286 (459)
T 2z83_A 212 RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITS 286 (459)
T ss_dssp HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCH
T ss_pred hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCH
Confidence 999999999994 6788999999999999999999999999999 99999 7799999
Q ss_pred CcceeeccccccCCC-CccEEEEEecc
Q 011100 386 RDYVHRVGRTARAGR-GGLAVSFVTQN 411 (493)
Q Consensus 386 ~~y~qr~GR~gR~g~-~g~~~~~~~~~ 411 (493)
.+|+||+||+||.|. +|.|++|+...
T Consensus 287 ~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 287 ASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999997 89999999875
No 50
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.1e-38 Score=330.15 Aligned_cols=286 Identities=17% Similarity=0.219 Sum_probs=209.1
Q ss_pred hhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHH
Q 011100 92 PKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQ 171 (493)
Q Consensus 92 ~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 171 (493)
...+++++++++||||||||+ +++..+... ...+|++||++||.|+++.+... |+++..++|+.....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv- 217 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV- 217 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC-
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe-
Confidence 345688999999999999998 344444443 23599999999999999999886 678888998765300
Q ss_pred HHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCC-cCCceeeeeecccchH
Q 011100 172 AKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLP-KNRQTLLFSATMTSDL 250 (493)
Q Consensus 172 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 250 (493)
.......+++++|++.+. ....+++|||||||++.+.+++..+..++..++ ...+++++|||.+ .+
T Consensus 218 -~TpGr~~~il~~T~e~~~-----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i 284 (677)
T 3rc3_A 218 -QPNGKQASHVSCTVEMCS-----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LV 284 (677)
T ss_dssp -STTCCCCSEEEEEGGGCC-----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HH
T ss_pred -cCCCcccceeEecHhHhh-----------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HH
Confidence 000012567777765431 246779999999999999999999999988887 7889999999963 34
Q ss_pred HHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCc
Q 011100 251 QTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQE 330 (493)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~ 330 (493)
..+....... ..+.... ..... .+ ..... ..+.... ...+|||++++.++.++..|.+.++.
T Consensus 285 ~~l~~~~~~~-~~v~~~~---r~~~l--~~--~~~~l---------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~ 346 (677)
T 3rc3_A 285 MELMYTTGEE-VEVRDYK---RLTPI--SV--LDHAL---------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLE 346 (677)
T ss_dssp HHHHHHHTCC-EEEEECC---CSSCE--EE--CSSCC---------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCc-eEEEEee---ecchH--HH--HHHHH---------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCC
Confidence 4444443222 2211110 01000 00 00000 0111122 34588999999999999999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhhc--CCCeEEEEcCCCCCCCCCCCcCeEEEecC--------------CCCCCcceeeccc
Q 011100 331 AVALHSFKSQSQRLSALHRFKS--GQATILLATDVASRGLDIPTVDLVLNYDI--------------PRYPRDYVHRVGR 394 (493)
Q Consensus 331 ~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~--------------p~s~~~y~qr~GR 394 (493)
+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ ++++||++++ |.+..+|+||+||
T Consensus 347 v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 347 SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp CEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 9999999999999999999999 889999999999999999 9999999999 7789999999999
Q ss_pred cccCCCC---ccEEEEEecccHHHHHHHHHH
Q 011100 395 TARAGRG---GLAVSFVTQNDVDLIHEIEAV 422 (493)
Q Consensus 395 ~gR~g~~---g~~~~~~~~~~~~~~~~~~~~ 422 (493)
|||.|.. |.|+.+ ...+...+..+...
T Consensus 426 AGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTM-NHEDLSLLKEILKR 455 (677)
T ss_dssp BTCTTSSCSSEEEEES-STTHHHHHHHHHHS
T ss_pred CCCCCCCCCCEEEEEE-ecchHHHHHHHHhc
Confidence 9999965 554444 44454455554443
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7e-38 Score=326.20 Aligned_cols=312 Identities=17% Similarity=0.189 Sum_probs=190.6
Q ss_pred CCcHHHHhhhhhhhc----C-CcEEEEccCCCCchhHhHHHHHHHhhcCC-------CCeEEEEEcccHHHHHHHH-HHH
Q 011100 82 RPTPVQTHCIPKILE----G-KDVLGLAQTGSGKTAAFALPILHRLAEDP-------YGVLALVITPTRELAYQLA-EQF 148 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~----~-~~~lv~a~TGsGKTl~~~l~~l~~l~~~~-------~~~~~lil~Pt~~L~~q~~-~~~ 148 (493)
.|+++|.++++.+++ + +++++++|||||||++++..+. .+.... .+.++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999876 4 5699999999999999665444 444333 4678999999999999998 666
Q ss_pred HHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC-CCccCCcceEeeccccccccCCCHHHHH
Q 011100 149 KALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI-PPVFSRTKFLVLDEADRVLDVGFEEELR 227 (493)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~l~~~~~vViDEah~~~~~~~~~~~~ 227 (493)
..+ +..+..+.++. .....+|+|+||++|.......... ......+++||+||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 655 33444444332 2457899999999998765422111 1224678999999999987642 24556
Q ss_pred HHHHhCCcCCceeeeeecccchHH-HHHHHhcCCceEEecccccc--ccccceEEEEEec--------------------
Q 011100 228 VVFQCLPKNRQTLLFSATMTSDLQ-TLLELSANKAYFYEAYEGFK--TVETLKQQYIFIP-------------------- 284 (493)
Q Consensus 228 ~i~~~~~~~~~~i~~SAT~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------- 284 (493)
.++..++ ..++++||||+..... .....+......+....... .............
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6777765 5789999999875322 22222222111111100000 0000000000000
Q ss_pred -------CCc--------chHHHHH-HHHhhhh-cCCCeEEEEecchhhHHHHHHHHHhcCCc--------eeeccCCCC
Q 011100 285 -------KNV--------KDVYLMH-VLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEELDQE--------AVALHSFKS 339 (493)
Q Consensus 285 -------~~~--------~~~~l~~-~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~~ 339 (493)
... +...+.. +...+.. ...+++||||+++..|+.++..|.+.+.. +..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000 0111111 2111222 22379999999999999999999876543 667899876
Q ss_pred HHHHHHHHHHhhcCCCe---EEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCC--CccEEEEEe
Q 011100 340 QSQRLSALHRFKSGQAT---ILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGR--GGLAVSFVT 409 (493)
Q Consensus 340 ~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~--~g~~~~~~~ 409 (493)
. +|..++++|++|+.+ |||||+++++|+|+|++++||++++|+++..|+||+||+||.+. .+..+++++
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 4 799999999998766 88999999999999999999999999999999999999999885 344444443
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.6e-38 Score=316.68 Aligned_cols=269 Identities=14% Similarity=0.157 Sum_probs=188.5
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL 175 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 175 (493)
+|+++++++|||||||++|++|+++.+... +.+++|++||++|+.|+++.+. ++.+....|+... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 368999999999999999999999666543 5689999999999999988765 3455544443221 11
Q ss_pred cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhC-CcCCceeeeeecccchHHHHH
Q 011100 176 MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCL-PKNRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 176 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~ 254 (493)
..+..+.+.|.+.+...+... ..+.++++|||||+|++ +..+......+.... +.++|+++||||+++.+..+.
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred CCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 234567778888876655543 23688999999999996 332333333333332 468999999999986422111
Q ss_pred HHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeec
Q 011100 255 ELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVAL 334 (493)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~ 334 (493)
.. +.+ +......++.. +...+...+. .. .+++||||++++.++.++..|+..+..+..+
T Consensus 143 ~~--~~~--------------i~~~~~~~~~~-~~~~~~~~l~---~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~l 201 (431)
T 2v6i_A 143 PS--NSP--------------IIDEETRIPDK-AWNSGYEWIT---EF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYL 201 (431)
T ss_dssp CC--SSC--------------CEEEECCCCSS-CCSSCCHHHH---SC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CC--CCc--------------eeeccccCCHH-HHHHHHHHHH---cC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 00 000 00000011111 1111122222 22 3689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCe-----------------EEEecCCCCCCcceeecccccc
Q 011100 335 HSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDL-----------------VLNYDIPRYPRDYVHRVGRTAR 397 (493)
Q Consensus 335 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~-----------------Vi~~~~p~s~~~y~qr~GR~gR 397 (493)
||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||
T Consensus 202 hg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR 276 (431)
T 2v6i_A 202 NRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276 (431)
T ss_dssp STT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred CCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCC
Confidence 996 577899999999999999999999999999 554 6788999999999999999999
Q ss_pred CCCC-ccEEEEE
Q 011100 398 AGRG-GLAVSFV 408 (493)
Q Consensus 398 ~g~~-g~~~~~~ 408 (493)
.|.. |.++++.
T Consensus 277 ~g~~~~~~~~~~ 288 (431)
T 2v6i_A 277 NPEKLGDIYAYS 288 (431)
T ss_dssp CTTCCCCEEEEC
T ss_pred CCCCCCeEEEEc
Confidence 9864 4555554
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.7e-37 Score=336.92 Aligned_cols=333 Identities=18% Similarity=0.175 Sum_probs=225.9
Q ss_pred CCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCce
Q 011100 81 RRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLR 158 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 158 (493)
..|+|+|.+++..++.. ..+|++++||+|||++++..+...+..+. ..++|||||+ +|+.||..++.+.+ +++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 46999999999988874 47999999999999998887766665432 4479999999 99999999997766 566
Q ss_pred EEEEEcCCCHHHHHH--HhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCH--HHHHHHHHhCC
Q 011100 159 CEVVVGGMDLLTQAK--SLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFE--EELRVVFQCLP 234 (493)
Q Consensus 159 ~~~~~g~~~~~~~~~--~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~--~~~~~i~~~~~ 234 (493)
+..+.|+........ ......+|+|+|++.+........ .....++++|||||||++.+.... .....+.....
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~--~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLE--HLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTH--HHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHH--HhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 665555332211111 112357999999887753211100 112346889999999999765422 12222222222
Q ss_pred cCCceeeeeecccc----hHHHHHHHhcCCce------------------------------------------------
Q 011100 235 KNRQTLLFSATMTS----DLQTLLELSANKAY------------------------------------------------ 262 (493)
Q Consensus 235 ~~~~~i~~SAT~~~----~~~~~~~~~~~~~~------------------------------------------------ 262 (493)
...+++++||||.. ++..+........+
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 45679999999853 11111111100000
Q ss_pred --------------------------------EEeccc-cccc--cccceEEEE--------------------------
Q 011100 263 --------------------------------FYEAYE-GFKT--VETLKQQYI-------------------------- 281 (493)
Q Consensus 263 --------------------------------~~~~~~-~~~~--~~~~~~~~~-------------------------- 281 (493)
.+.... .... .........
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRA 464 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGT
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHH
Confidence 000000 0000 000000000
Q ss_pred -------------------EecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHh-cCCceeeccCCCCHH
Q 011100 282 -------------------FIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEE-LDQEAVALHSFKSQS 341 (493)
Q Consensus 282 -------------------~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~ 341 (493)
.+....+...+..++.. ....++||||+++..++.++..|.. .|+.+..+||+|++.
T Consensus 465 ~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp HHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred hhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 01111233344444443 3457999999999999999999995 699999999999999
Q ss_pred HHHHHHHHhhcCC--CeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHH
Q 011100 342 QRLSALHRFKSGQ--ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 342 ~r~~~~~~f~~g~--~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 419 (493)
+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.+++++...+......+
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999999987776655444444555
Q ss_pred HHHh
Q 011100 420 EAVV 423 (493)
Q Consensus 420 ~~~~ 423 (493)
.+.+
T Consensus 622 ~~~~ 625 (968)
T 3dmq_A 622 VRWY 625 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=6.4e-37 Score=282.29 Aligned_cols=208 Identities=32% Similarity=0.482 Sum_probs=189.9
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-----CCCeEE
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-----PYGVLA 131 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-----~~~~~~ 131 (493)
....+|+++++++.+.+++.++||..|+++|.++++.+++|+|+++.+|||||||++|++|++..+... ..+.++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 345679999999999999999999999999999999999999999999999999999999999988743 246789
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEee
Q 011100 132 LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211 (493)
Q Consensus 132 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vVi 211 (493)
||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||+++.+++... ...+.++++||+
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~~~~~~~lVi 182 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG---KTNLRRTTYLVL 182 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT---SCCCTTCCEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC---CCCcccccEEEE
Confidence 99999999999999999999888899999999999988888777788999999999999998776 345788999999
Q ss_pred ccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEecc
Q 011100 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267 (493)
Q Consensus 212 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 267 (493)
||||++.+++|...+..++..++++.|+++||||+++.+..+...++..+..+.+.
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999998888776543
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=279.57 Aligned_cols=207 Identities=45% Similarity=0.778 Sum_probs=189.1
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
...+|+++++++.+.++|+.+||..|+++|.++++.+++|+++++.+|||||||++|++|++..+.....+.++||++||
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 35679999999999999999999999999999999999999999999999999999999999998877667789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||+++..++.... ...+.++++||+||||++
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYLVMDEADRI 198 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEEEEcChhhh
Confidence 999999999999998888899999999998877777777899999999999999887643 234788999999999999
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEec
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEA 266 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 266 (493)
.+++|...+..++..++...|+++||||++..+..+...++..+..+.+
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999989999999999999999999999888876643
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-36 Score=268.91 Aligned_cols=202 Identities=34% Similarity=0.541 Sum_probs=184.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.+|+++++++++.++|..+||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.....+.++||++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998877666778999999999
Q ss_pred HHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 140 LAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||+++...+... ...+.+++++|+||||++.
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC---CcCcccCCEEEEEChHHhH
Confidence 9999999999998777 78999999999888777777788999999999999988765 3457889999999999999
Q ss_pred cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEE
Q 011100 219 DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFY 264 (493)
Q Consensus 219 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 264 (493)
+.+|...+..++..++.+.|++++|||++..+..+...+...+..+
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999899999999999999999998888776543
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=4.2e-36 Score=275.78 Aligned_cols=207 Identities=32% Similarity=0.500 Sum_probs=176.6
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
....+|+++++++++.++|..+||..|+++|.++++.+++++++++.+|||||||++|++|++..+.....+.++||++|
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 34567999999999999999999999999999999999999999999999999999999999999876655778999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC-CcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 137 TRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR-PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 137 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
|++|+.|+++.+..++...++.+..++|+.....+...+..+ ++|+|+||+++..++... ...+.++++||+||||
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~---~~~~~~~~~lViDEah 183 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR---YLSPKWIKMFVLDEAD 183 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT---SSCSTTCCEEEEESHH
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC---CcCcccCcEEEECCch
Confidence 999999999999999988889999999988766655555444 899999999999988765 3446789999999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEec
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEA 266 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 266 (493)
++.+.+|...+..++..++...|++++|||+++.+..+...++..+..+.+
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999988887766543
No 58
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-36 Score=273.45 Aligned_cols=204 Identities=32% Similarity=0.534 Sum_probs=183.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.+|+++++++.+.++++++||..|+++|.++++.+++++++++++|||||||++|++|++..+.....+.++||++||++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999999887666778999999999
Q ss_pred HHHHHHHHHHHhccCC----CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccc
Q 011100 140 LAYQLAEQFKALGSGL----HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEAD 215 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah 215 (493)
|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||+++..++... ...+.+++++|+||||
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ---ALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT---CCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC---CCCcCcceEEEEcCch
Confidence 9999999999998766 68888899988765554445567899999999999988765 3457889999999999
Q ss_pred ccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEec
Q 011100 216 RVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEA 266 (493)
Q Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 266 (493)
++.++++...+..++..++.+.|++++|||+++++..+...+...+..+..
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999989999999999999999999999888876654
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.5e-36 Score=279.48 Aligned_cols=216 Identities=37% Similarity=0.531 Sum_probs=185.1
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC---------CC
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP---------YG 128 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~---------~~ 128 (493)
...+|+++++++.+.++|..+||..|+++|.++++.+++++|+++++|||||||++|++|++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 456799999999999999999999999999999999999999999999999999999999999886432 24
Q ss_pred eEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcce
Q 011100 129 VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKF 208 (493)
Q Consensus 129 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~ 208 (493)
.++||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||+++..++... ...+.++++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~---~~~~~~~~~ 177 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN---KISLEFCKY 177 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT---SBCCTTCCE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CCChhhCCE
Confidence 68999999999999999999999888889999999999887777777788999999999999998775 345788999
Q ss_pred EeeccccccccCCCHHHHHHHHHh--CCc--CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccc
Q 011100 209 LVLDEADRVLDVGFEEELRVVFQC--LPK--NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETL 276 (493)
Q Consensus 209 vViDEah~~~~~~~~~~~~~i~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (493)
||+||||++.+++|...+..++.. ++. +.|+++||||+++.+..+...++..+..+.+.........+
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 249 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCc
Confidence 999999999999999999999985 343 78999999999999999999988887776654443333333
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-35 Score=271.00 Aligned_cols=204 Identities=32% Similarity=0.519 Sum_probs=180.8
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
...+|+++++++.+.++|+.+||..|+++|.++++.+++|+++++.+|||+|||++|++|++..+.....+.++||++||
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 34679999999999999999999999999999999999999999999999999999999999998766667789999999
Q ss_pred HHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccc
Q 011100 138 RELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADR 216 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~ 216 (493)
++|+.|+++.+..++... ++++..++|+.....+...+ .+++|+|+||+++..++... ...+.++++||+||||+
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~---~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELD---YLNPGSIRLFILDEADK 177 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTT---SSCGGGCCEEEESSHHH
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcC---CcccccCCEEEeCCchH
Confidence 999999999999998765 78999999998876655544 57899999999999988765 34568899999999999
Q ss_pred cccCC-CHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEe
Q 011100 217 VLDVG-FEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYE 265 (493)
Q Consensus 217 ~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 265 (493)
+.+++ |...+..++..++...|++++|||+++.+..+...+...+..+.
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 178 LLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred hhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 99987 99999999999998999999999999998888877777666553
No 61
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=271.49 Aligned_cols=204 Identities=29% Similarity=0.452 Sum_probs=176.2
Q ss_pred CCcccccc-CCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC------CCCe
Q 011100 57 DSTVTFAG-LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGV 129 (493)
Q Consensus 57 ~~~~~~~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~------~~~~ 129 (493)
....+|++ +++++.+.+++.++||.+|+++|.++++.+++|+|+++.+|||||||++|++|++..+... ..+.
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 34566877 7999999999999999999999999999999999999999999999999999999887642 2467
Q ss_pred EEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceE
Q 011100 130 LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFL 209 (493)
Q Consensus 130 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~v 209 (493)
++||++||++|+.|+.+.+..+. ..++.+..++|+.....+...+..+++|+|+||+++..++... ...+.++++|
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~---~~~~~~~~~l 171 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN---SVNLRSITYL 171 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT---CCCCTTCCEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcCcccceEE
Confidence 89999999999999999999986 4478899999998877777777788999999999999988765 3457889999
Q ss_pred eeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEE
Q 011100 210 VLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFY 264 (493)
Q Consensus 210 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 264 (493)
|+||||++.+++|...+..++..++.+.|+++||||+++.+..+...++..+..+
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred EEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999998888777654
No 62
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=9.1e-36 Score=304.56 Aligned_cols=312 Identities=14% Similarity=0.175 Sum_probs=214.8
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 82 RPTPVQTHCIPKIL----EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
.|+|+|.++++.+. .++++|++++||+|||++++..+.. +.......++|||||+ +|+.||.+++.+++.. +
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~--~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELTPSLVICPL-SVLKNWEEELSKFAPH--L 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTT--S
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCC--c
Confidence 59999999998763 4788999999999999997655444 4433335679999995 6899999999998753 5
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCC
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNR 237 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 237 (493)
++..+.|+... ......+|+|+||+.+..... .....+++||+||||++.+.. ......+..++ ..
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 66666665421 123467999999998865432 112357899999999998764 23334445554 45
Q ss_pred ceeeeeecccc-hHHHH---HHHhcC--------------------------------CceEEecccc----ccccccce
Q 011100 238 QTLLFSATMTS-DLQTL---LELSAN--------------------------------KAYFYEAYEG----FKTVETLK 277 (493)
Q Consensus 238 ~~i~~SAT~~~-~~~~~---~~~~~~--------------------------------~~~~~~~~~~----~~~~~~~~ 277 (493)
+.+++||||.. ....+ ...... .++.+..... ........
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~ 258 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKI 258 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCe
Confidence 78999999853 22221 111100 1111110000 00111111
Q ss_pred EEEEEecC---------------------------------------------------------CcchHHHHHHHHhhh
Q 011100 278 QQYIFIPK---------------------------------------------------------NVKDVYLMHVLSKME 300 (493)
Q Consensus 278 ~~~~~~~~---------------------------------------------------------~~~~~~l~~~~~~~~ 300 (493)
...+.++- ..+...+..++....
T Consensus 259 ~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~ 338 (500)
T 1z63_A 259 ETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEAL 338 (500)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHH
Confidence 12222221 112222334444433
Q ss_pred hcCCCeEEEEecchhhHHHHHHHHHhc-CCceeeccCCCCHHHHHHHHHHhhcC-CCe-EEEEcCCCCCCCCCCCcCeEE
Q 011100 301 DMGIRSAIIFVSTCRSCHLLSLLLEEL-DQEAVALHSFKSQSQRLSALHRFKSG-QAT-ILLATDVASRGLDIPTVDLVL 377 (493)
Q Consensus 301 ~~~~~~~lVf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~~Gidi~~v~~Vi 377 (493)
..+ .++||||++...++.++..|... ++.+..+||+++..+|..+++.|++| ..+ +|++|+++++|+|++++++||
T Consensus 339 ~~~-~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 339 DEG-DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp TTT-CCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred ccC-CcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 333 78999999999999999999885 99999999999999999999999998 555 789999999999999999999
Q ss_pred EecCCCCCCcceeeccccccCCCCccE--EEEEeccc
Q 011100 378 NYDIPRYPRDYVHRVGRTARAGRGGLA--VSFVTQND 412 (493)
Q Consensus 378 ~~~~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~~ 412 (493)
++|+|+++..|.|++||++|.|+.+.+ +.|+..+.
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 999999999999999999999987766 45556554
No 63
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=283.56 Aligned_cols=205 Identities=27% Similarity=0.372 Sum_probs=181.8
Q ss_pred CCccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 57 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
.+..+|+++++++.++++|..+||..|+++|.++++.++.+ +|+++++|||||||++|++|+++.+.....++++||+
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 35678999999999999999999999999999999999998 9999999999999999999999999877777889999
Q ss_pred cccHHHHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecc
Q 011100 135 TPTRELAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213 (493)
Q Consensus 135 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDE 213 (493)
+||++||.|+++.+..++..+ ++.+....|+...... ....++|+|+||++|.+++.... ...++++++|||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDE 243 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETT
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeC
Confidence 999999999999999998764 6888888887764221 24568999999999999997543 34578999999999
Q ss_pred cccccc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEec
Q 011100 214 ADRVLD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEA 266 (493)
Q Consensus 214 ah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 266 (493)
||++++ .+|...+..++..++.++|+++||||+++.+..+...++..+..+.+
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999997 68999999999999999999999999999999999999988877654
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=275.96 Aligned_cols=203 Identities=38% Similarity=0.582 Sum_probs=179.6
Q ss_pred CccccccCC--CCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC----CCeEE
Q 011100 58 STVTFAGLG--LAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLA 131 (493)
Q Consensus 58 ~~~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~----~~~~~ 131 (493)
....|++++ +++.++++|+.+||..|+++|.++++.++.++|+++++|||||||++|++|++..+.... .+.++
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 345677777 999999999999999999999999999999999999999999999999999999886532 36779
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEee
Q 011100 132 LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211 (493)
Q Consensus 132 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vVi 211 (493)
||++||++|+.|+++.+..++...+..+..++|+.....+...+..+++|+|+||+++..++..... ..+.++++||+
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~--~~~~~l~~lVi 207 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPG--FMYKNLQCLVI 207 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTT--CCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCC--cccccCCEEEE
Confidence 9999999999999999999999889999999999998887777777899999999999998876542 34788999999
Q ss_pred ccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCce
Q 011100 212 DEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAY 262 (493)
Q Consensus 212 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 262 (493)
||||++.+++|...+..++..++...|+++||||+++++..+.+..+..+.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999988876543
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.2e-35 Score=268.99 Aligned_cols=206 Identities=30% Similarity=0.488 Sum_probs=177.8
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
...+|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||++|++|+++.+.....+.++||++|+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 34679999999999999999999999999999999999999999999999999999999999998776667889999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++|+.|+++.+..++...++.+..++|+.....+...+ ..++|+|+||+++...+... ...+.++++||+||||++
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~~~~~---~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRR---RFRTDKIKMFILDEADEM 167 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC----------C-TTCSEEEECHHHHHHHHHTT---SSCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-CCCCEEEECHHHHHHHHHhC---CcchhhCcEEEEcChhHH
Confidence 99999999999999988899999999988765555444 34899999999999988765 345788999999999999
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEecc
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 267 (493)
.++++...+..++..++...|++++|||+++.+..+...+...+..+.+.
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999888877766543
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.4e-34 Score=290.79 Aligned_cols=322 Identities=20% Similarity=0.195 Sum_probs=233.5
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+. |+++|....-.+.+|+ |+.+.||+|||+++.+|++..... |..+.||+|+..||.|-++++..++..+|+
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 5666 9999999888888886 999999999999999999866555 667999999999999999999999999999
Q ss_pred eEEEEEcCC--------------------------------------------------CHHHHHHHhcCCCcEEEECcc
Q 011100 158 RCEVVVGGM--------------------------------------------------DLLTQAKSLMNRPHVVIATPG 187 (493)
Q Consensus 158 ~~~~~~g~~--------------------------------------------------~~~~~~~~~~~~~~Iiv~Tp~ 187 (493)
.++++.... +...... .-.+||+++|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCEEccCc
Confidence 999998821 1111111 124799999987
Q ss_pred hH-HHHHhcCCC---CCCccCCcceEeeccccccc-cCC------------CHH--------------------------
Q 011100 188 RI-KVLLEEDPD---IPPVFSRTKFLVLDEADRVL-DVG------------FEE-------------------------- 224 (493)
Q Consensus 188 ~l-~~~l~~~~~---~~~~l~~~~~vViDEah~~~-~~~------------~~~-------------------------- 224 (493)
-+ .+.|+.... -......+.+.||||+|.++ |.. -..
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 64 233332211 02234678899999999754 200 000
Q ss_pred ---------HHHHH---------------------HHh---CCc------------------------------------
Q 011100 225 ---------ELRVV---------------------FQC---LPK------------------------------------ 235 (493)
Q Consensus 225 ---------~~~~i---------------------~~~---~~~------------------------------------ 235 (493)
.++.+ ++. +..
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 00000 000 000
Q ss_pred -------------------------CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchH
Q 011100 236 -------------------------NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDV 290 (493)
Q Consensus 236 -------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (493)
...+.+||||+......+...+.-.... +.........-....+......+..
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~--IPtnkp~~R~d~~d~vy~t~~eK~~ 461 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV--IPTHKPMIRKDHDDLVFRTQKEKYE 461 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE--CCCSSCCCCEECCCEEESSHHHHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE--ECCCCCcceeecCcEEEecHHHHHH
Confidence 1368999999998888887777544222 2222111111112334445555666
Q ss_pred HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCC
Q 011100 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370 (493)
Q Consensus 291 ~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 370 (493)
.+...+......+ .++||||+|+..++.++..|...|+.+.++||+....++..+...++.| .|+|||++++||+|+
T Consensus 462 al~~~I~~~~~~g-qpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI 538 (822)
T 3jux_A 462 KIVEEIEKRYKKG-QPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHT-CCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCC
T ss_pred HHHHHHHHHhhCC-CCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCc
Confidence 6666666544344 6899999999999999999999999999999985555555455555544 699999999999999
Q ss_pred C--------CcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEeccc
Q 011100 371 P--------TVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQND 412 (493)
Q Consensus 371 ~--------~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~ 412 (493)
+ +..+||++++|.+...|.||+||+||+|.+|.+++|++.+|
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 8 66799999999999999999999999999999999999887
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=267.46 Aligned_cols=206 Identities=38% Similarity=0.586 Sum_probs=181.4
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC----CCCeEEEE
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED----PYGVLALV 133 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~----~~~~~~li 133 (493)
...+|+++++++.+.++|..+|+..|+++|.++++.+++++++++++|||||||++|++|++..+... ..+.++||
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999887542 23678999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecc
Q 011100 134 ITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDE 213 (493)
Q Consensus 134 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDE 213 (493)
++||++|+.|+++.+..++...++.+..++|+.....+...+ .+++|+|+||+++..++.... ...+.++++||+||
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDE 179 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETV--SFHATDLQMLVLDE 179 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCS--SCCCTTCCEEEETT
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcC--CcccccccEEEEeC
Confidence 999999999999999999988889999999998766555444 678999999999998887643 23467889999999
Q ss_pred ccccccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEec
Q 011100 214 ADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYEA 266 (493)
Q Consensus 214 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 266 (493)
||++.+++|...+..++..++...|+++||||+++.+..+....+..+..+.+
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999999999999999999999999999999998888776654
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.6e-34 Score=259.99 Aligned_cols=200 Identities=41% Similarity=0.587 Sum_probs=179.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC---CCCeEEEEEccc
Q 011100 61 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED---PYGVLALVITPT 137 (493)
Q Consensus 61 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~---~~~~~~lil~Pt 137 (493)
+|+++++++++.+.++.+|+..|+++|.++++.+++++++++.+|||+|||++|++|++..+... ..+.++||++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999988642 236789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 138 RELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 138 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
++|+.|+++.+..++.. +++..++|+.....+...+..+++|+|+||+++..++... ...+.++++||+||||++
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT---SSCCTTCSEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC---CcchhhceEEEEEChhHh
Confidence 99999999999998764 6788889988877766666778999999999999988775 345788999999999999
Q ss_pred ccCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEEe
Q 011100 218 LDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFYE 265 (493)
Q Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 265 (493)
.+.++...+..++..++...|++++|||+++.+..+...+...+..+.
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 999999999999999998999999999999999999988888776654
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-34 Score=261.71 Aligned_cols=202 Identities=29% Similarity=0.536 Sum_probs=179.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 60 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 60 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
..|+++++++.+.++|..+||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.....+.++||++|+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876655668999999999
Q ss_pred HHHHHHHHHHHhccCC-CceEEEEEcCCCHHHHHHHhc-CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc
Q 011100 140 LAYQLAEQFKALGSGL-HLRCEVVVGGMDLLTQAKSLM-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV 217 (493)
Q Consensus 140 L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~ 217 (493)
|+.|+++.+..+.... ++++..++|+.....+...+. ..++|+|+||+++..++... ...+.+++++|+||||++
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC---CCCcccCCEEEEcCHHHH
Confidence 9999999999998766 789999999988766655554 45799999999999988765 345788999999999999
Q ss_pred cc-CCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHHhcCCceEE
Q 011100 218 LD-VGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKAYFY 264 (493)
Q Consensus 218 ~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 264 (493)
.+ .++...+..++..++.+.|++++|||+++.+..+...++..+..+
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 87 478888999999988899999999999999999888887776554
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=301.91 Aligned_cols=319 Identities=18% Similarity=0.230 Sum_probs=226.9
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 82 RPTPVQTHCIPKIL----EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
.|+|||.+++..++ .+++.|++.+||+|||++++..+...+........+||||| .+|+.||.+++.+++. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 69999999998766 67899999999999999987776655544344556899999 5789999999999975 46
Q ss_pred eEEEEEcCCCHHHHHHH------------hcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHH
Q 011100 158 RCEVVVGGMDLLTQAKS------------LMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEE 225 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~ 225 (493)
++.+.+|+......... .....+|+|+|++.+........ -..+++|||||||++.+.. ..
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~-----~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG-----SIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH-----TSEEEEEEETTGGGGCCSS--SH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh-----cCCcceeehhhhhhhcCch--hH
Confidence 77777777654433322 12457899999999876443211 1256899999999997654 34
Q ss_pred HHHHHHhCCcCCceeeeeecccc----hHHHHHHHhcCC-----------------------------ceEEec-cccc-
Q 011100 226 LRVVFQCLPKNRQTLLFSATMTS----DLQTLLELSANK-----------------------------AYFYEA-YEGF- 270 (493)
Q Consensus 226 ~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~-~~~~- 270 (493)
....+..+. ..+.+++||||.. ++..++...... +++... ....
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 444455553 4557889999842 222222222111 011100 0000
Q ss_pred cccccceEEEEEec------------------------------------------------------------------
Q 011100 271 KTVETLKQQYIFIP------------------------------------------------------------------ 284 (493)
Q Consensus 271 ~~~~~~~~~~~~~~------------------------------------------------------------------ 284 (493)
..........+.++
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 00111111111111
Q ss_pred ---------CCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCC
Q 011100 285 ---------KNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355 (493)
Q Consensus 285 ---------~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 355 (493)
...+...+..++..+...+ .++||||.....++.+..+|...|+.+..+||+++..+|..+++.|+++..
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g-~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDG-HRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTT-CCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCC-CeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 1122333445555554444 799999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccE--EEEEeccc
Q 011100 356 ---TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA--VSFVTQND 412 (493)
Q Consensus 356 ---~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~~ 412 (493)
.+|++|.+++.|||++.+++||+||+|||+..++|++||++|.|+...+ +.|++.+.
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 4999999999999999999999999999999999999999999986554 55666663
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-32 Score=287.16 Aligned_cols=321 Identities=14% Similarity=0.169 Sum_probs=220.4
Q ss_pred CCcHHHHhhhhhhh---------cCCcEEEEccCCCCchhHhHHHHHHHhhcCC----CCeEEEEEcccHHHHHHHHHHH
Q 011100 82 RPTPVQTHCIPKIL---------EGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~---------~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
.|+|||.+++..+. .+...|++.+||+|||++++..+...+...+ ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 58999999999874 3456999999999999998877776655432 23469999997 8999999999
Q ss_pred HHhccCCCceEEEEEcCCCHHHH--HHHhc------CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccC
Q 011100 149 KALGSGLHLRCEVVVGGMDLLTQ--AKSLM------NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDV 220 (493)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~~~~--~~~~~------~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~ 220 (493)
.+++.. .+.+..+.++...... ..... ...+|+|+|++.+....... .-..+++||+||||++.+.
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l-----~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVL-----HKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTT-----TTSCCCEEEETTGGGCCTT
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHh-----hcCCccEEEEECceecCCh
Confidence 998754 4666666666432211 11111 14789999999987654321 2246789999999999875
Q ss_pred CCHHHHHHHHHhCCcCCceeeeeecccch-H---HHHH---------------HHhcC----------------------
Q 011100 221 GFEEELRVVFQCLPKNRQTLLFSATMTSD-L---QTLL---------------ELSAN---------------------- 259 (493)
Q Consensus 221 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~---~~~~---------------~~~~~---------------------- 259 (493)
. ......+..+. ..+.+++||||-.. + ..+. ..+..
T Consensus 208 ~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 208 D--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp C--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred h--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 4 22233333333 45689999998431 0 0000 00000
Q ss_pred -------CceEEeccccc--cccccceEEEEEecC---------------------------------------------
Q 011100 260 -------KAYFYEAYEGF--KTVETLKQQYIFIPK--------------------------------------------- 285 (493)
Q Consensus 260 -------~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------------------------------- 285 (493)
.+++..-.... ..........+.+.-
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 00000000000 000001111111110
Q ss_pred ---------------------------------CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCcee
Q 011100 286 ---------------------------------NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAV 332 (493)
Q Consensus 286 ---------------------------------~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~ 332 (493)
..+...+..++..+......++||||++...++.++..|...++.+.
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEE
Confidence 11222333444444333457999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHhhcCCC---eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccE--EEE
Q 011100 333 ALHSFKSQSQRLSALHRFKSGQA---TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA--VSF 407 (493)
Q Consensus 333 ~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~--~~~ 407 (493)
.+||+++..+|..+++.|++|.. .+|++|.++++|+|++++++||+||+||++..|.|++||++|.|+...+ +.|
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEE
Confidence 99999999999999999999865 4899999999999999999999999999999999999999999987654 455
Q ss_pred Eeccc
Q 011100 408 VTQND 412 (493)
Q Consensus 408 ~~~~~ 412 (493)
+..+.
T Consensus 525 v~~~t 529 (644)
T 1z3i_X 525 LSTGT 529 (644)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 66653
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=261.15 Aligned_cols=208 Identities=30% Similarity=0.509 Sum_probs=174.4
Q ss_pred ccccccC----CCCHHHHHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEE
Q 011100 59 TVTFAGL----GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALV 133 (493)
Q Consensus 59 ~~~~~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~li 133 (493)
..+|+++ ++++.+.+++..+||..|+++|.++++.+++|+++++.+|||||||++|++|++..+... ..+.++||
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~li 103 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALI 103 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEE
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEE
Confidence 4557666 899999999999999999999999999999999999999999999999999999988643 34668999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHH-HHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeec
Q 011100 134 ITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQA-KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLD 212 (493)
Q Consensus 134 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViD 212 (493)
++||++|+.|+++.+..++...++.+..+.|+....... .....+++|+|+||+++..++..... ...+.++++||+|
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~~~lViD 182 (245)
T 3dkp_A 104 ISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP-GIDLASVEWLVVD 182 (245)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSC-SCCCTTCCEEEES
T ss_pred EeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCC-CcccccCcEEEEe
Confidence 999999999999999999988888888777764332211 11245689999999999999876532 2457889999999
Q ss_pred ccccccc---CCCHHHHHHHHHhCC-cCCceeeeeecccchHHHHHHHhcCCceEEecc
Q 011100 213 EADRVLD---VGFEEELRVVFQCLP-KNRQTLLFSATMTSDLQTLLELSANKAYFYEAY 267 (493)
Q Consensus 213 Eah~~~~---~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 267 (493)
|||++.+ .+|...+..++..+. .+.|+++||||+++++..+....+..+..+.+.
T Consensus 183 Eah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 183 ESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp SHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred ChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999988 467888888877654 578999999999999999999999888776543
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.6e-33 Score=303.18 Aligned_cols=328 Identities=16% Similarity=0.175 Sum_probs=218.3
Q ss_pred HHHHHHHHHcC-------CCCCcHHHHhhhhhhhc--------------CCcEEEEccCCCCchhHhHHHHHHHhhcCCC
Q 011100 69 EWAVQTCKELG-------MRRPTPVQTHCIPKILE--------------GKDVLGLAQTGSGKTAAFALPILHRLAEDPY 127 (493)
Q Consensus 69 ~~l~~~l~~~g-------~~~~~~~Q~~~i~~i~~--------------~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~ 127 (493)
+.+...+..+- ...|+|+|.+|++.+++ +++++++++||||||+++ ++++..+...+.
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~ 329 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDF 329 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCC
Confidence 45555555532 23599999999999875 367999999999999997 666665554444
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh-cCCCcEEEECcchHHHHHhcCCCCCCccCCc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL-MNRPHVVIATPGRIKVLLEEDPDIPPVFSRT 206 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 206 (493)
..++|||+|+++|+.|+.+.+..+... .+.++.+.......+ ...++|+|+||++|..++..... ...+...
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~-~~~~~~~ 402 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD-LPVYNQQ 402 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC-CGGGGSC
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc-hhccccc
Confidence 568999999999999999999887642 123444433334444 35789999999999988765422 1235577
Q ss_pred ceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeecccchH-----HHHHHHhcCCceEEecccccc--ccccceEE
Q 011100 207 KFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDL-----QTLLELSANKAYFYEAYEGFK--TVETLKQQ 279 (493)
Q Consensus 207 ~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 279 (493)
.+||+||||++.. +..+..+...++ +.++++|||||.... ......+......+....... ....+...
T Consensus 403 ~lvIiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~ 478 (1038)
T 2w00_A 403 VVFIFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVD 478 (1038)
T ss_dssp EEEEEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEE
T ss_pred cEEEEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEE
Confidence 8999999999753 344666777775 579999999997432 112222221111111000000 00000000
Q ss_pred EEEe-------------------------cCCcchHH-HHHHHHhhhhc--------CCCeEEEEecchhhHHHHHHHHH
Q 011100 280 YIFI-------------------------PKNVKDVY-LMHVLSKMEDM--------GIRSAIIFVSTCRSCHLLSLLLE 325 (493)
Q Consensus 280 ~~~~-------------------------~~~~~~~~-l~~~~~~~~~~--------~~~~~lVf~~~~~~~~~l~~~l~ 325 (493)
|..+ ....+... +..++..+... ...++||||+++..|..++..|.
T Consensus 479 y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~ 558 (1038)
T 2w00_A 479 YNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFK 558 (1038)
T ss_dssp ECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHH
T ss_pred EEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 1000 00001111 22233333221 23589999999999999999998
Q ss_pred hcC------------Cce-eeccCC----------C----------CH-----------------------------HHH
Q 011100 326 ELD------------QEA-VALHSF----------K----------SQ-----------------------------SQR 343 (493)
Q Consensus 326 ~~~------------~~~-~~~~~~----------~----------~~-----------------------------~~r 343 (493)
+.+ +.+ +++|++ + ++ .+|
T Consensus 559 ~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R 638 (1038)
T 2w00_A 559 RLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYY 638 (1038)
T ss_dssp HHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHH
T ss_pred hhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 764 344 455542 2 22 147
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCC----ccEEEEEe
Q 011100 344 LSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRG----GLAVSFVT 409 (493)
Q Consensus 344 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~----g~~~~~~~ 409 (493)
..++++|++|+++|||+|+++.+|+|+|.+ +++++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 639 ~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 639 RDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 888999999999999999999999999999 678899999999999999999998764 55666654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.1e-30 Score=265.34 Aligned_cols=133 Identities=26% Similarity=0.256 Sum_probs=113.6
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+ +|+++|..+++.+++|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++.+..++..+|+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 799 89999999999999998 999999999999999999755554 557999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHhcCCCcEEEECcchH-HHHHhcCCC---CCCccC---CcceEeeccccccc
Q 011100 158 RCEVVVGGMDLLTQAKSLMNRPHVVIATPGRI-KVLLEEDPD---IPPVFS---RTKFLVLDEADRVL 218 (493)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~---~~~~l~---~~~~vViDEah~~~ 218 (493)
++.+++||.+...... ...++|+|+||++| .+++..... -...++ .+.++||||+|.++
T Consensus 150 sv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999988543333 34689999999999 787776521 123466 89999999999876
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=6.1e-29 Score=259.32 Aligned_cols=175 Identities=23% Similarity=0.244 Sum_probs=130.4
Q ss_pred CCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchh
Q 011100 236 NRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCR 315 (493)
Q Consensus 236 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~ 315 (493)
..|++++|||++...... .. . ....... ........+...+...+...+...+......+ .++||||+++.
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~-~-~~~~~~r--~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~-~~vlVf~~t~~ 450 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG-R-VVEQIIR--PTGLLDPLVRVKPTENQILDLMEGIRERAARG-ERTLVTVLTVR 450 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS-E-EEEECSC--TTCCCCCEEEEECSTTHHHHHHHHHHHHHHTT-CEEEEECSSHH
T ss_pred cCCEEEEecCCCHHHHHh----hh-C-eeeeeec--cCCCCCCeEEEecccchHHHHHHHHHHHHhcC-CEEEEEECCHH
Confidence 578999999997543211 11 1 1111110 00001111222233333344444444433333 69999999999
Q ss_pred hHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC-----CCCCCccee
Q 011100 316 SCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI-----PRYPRDYVH 390 (493)
Q Consensus 316 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~-----p~s~~~y~q 390 (493)
.++.++..|.+.++.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+..+|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 889999999
Q ss_pred eccccccCCCCccEEEEEecccHHHHHHHH
Q 011100 391 RVGRTARAGRGGLAVSFVTQNDVDLIHEIE 420 (493)
Q Consensus 391 r~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 420 (493)
|+||+||.+ .|.|++|++..+......++
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999985 79999999887765544443
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=2.1e-27 Score=247.66 Aligned_cols=175 Identities=19% Similarity=0.196 Sum_probs=130.3
Q ss_pred cCCceeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecch
Q 011100 235 KNRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTC 314 (493)
Q Consensus 235 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~ 314 (493)
...|++++|||++...... ............ .. ....+...+.......+...+......+ .++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~--~l--~~p~i~v~~~~~~~~~Ll~~l~~~~~~~-~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPT--GL--LDPLIDVRPIEGQIDDLIGEIQARIERN-ERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTT--CC--CCCEEEEECSTTHHHHHHHHHHHHHTTT-CEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeeccc--CC--CCCeEEEecccchHHHHHHHHHHHHhcC-CeEEEEECCH
Confidence 3678999999997543221 111111111000 00 0111222222333334444444333333 6999999999
Q ss_pred hhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecC-----CCCCCcce
Q 011100 315 RSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDI-----PRYPRDYV 389 (493)
Q Consensus 315 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~-----p~s~~~y~ 389 (493)
..++.++..|.+.|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred eeccccccCCCCccEEEEEecccHHHHHHH
Q 011100 390 HRVGRTARAGRGGLAVSFVTQNDVDLIHEI 419 (493)
Q Consensus 390 qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 419 (493)
||+||+||. ..|.|++|+++.+......+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 78999999998766544433
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=2.5e-28 Score=210.04 Aligned_cols=156 Identities=35% Similarity=0.534 Sum_probs=143.9
Q ss_pred ccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhh
Q 011100 272 TVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFK 351 (493)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 351 (493)
....+.+.++.++...+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 4556888888888888888888777653 3468999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCccccc
Q 011100 352 SGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEF 430 (493)
Q Consensus 352 ~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (493)
+|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+.+...+..+++.++..+++.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEEC
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877654
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=5.1e-28 Score=208.66 Aligned_cols=157 Identities=34% Similarity=0.566 Sum_probs=138.7
Q ss_pred cceEEEEEecCCc-chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC
Q 011100 275 TLKQQYIFIPKNV-KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353 (493)
Q Consensus 275 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 353 (493)
.+.+.|+.++... +...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4678888887766 777777777654 347899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccc
Q 011100 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECK 433 (493)
Q Consensus 354 ~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (493)
+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...+..+++.++..++..+..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877654
Q ss_pred h
Q 011100 434 E 434 (493)
Q Consensus 434 ~ 434 (493)
.
T Consensus 160 ~ 160 (165)
T 1fuk_A 160 I 160 (165)
T ss_dssp C
T ss_pred H
Confidence 3
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=210.93 Aligned_cols=160 Identities=27% Similarity=0.525 Sum_probs=139.9
Q ss_pred ccccceEEEEEecCCc-chHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHh
Q 011100 272 TVETLKQQYIFIPKNV-KDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF 350 (493)
Q Consensus 272 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 350 (493)
.+..+.+.|+.++... +...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 3567888888887654 666666666543 447999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEcCCCCCCCCCCCcCeEEEecCC------CCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhc
Q 011100 351 KSGQATILLATDVASRGLDIPTVDLVLNYDIP------RYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVG 424 (493)
Q Consensus 351 ~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p------~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 424 (493)
++|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+...+...+..+++.++
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 888999999999999999999999999999999999999999
Q ss_pred Ccccccccch
Q 011100 425 KQLEEFECKE 434 (493)
Q Consensus 425 ~~~~~~~~~~ 434 (493)
..++......
T Consensus 161 ~~~~~~~~~~ 170 (175)
T 2rb4_A 161 SSIKQLNAED 170 (175)
T ss_dssp CCCEEECSSC
T ss_pred CcccccCCch
Confidence 8887766543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=5.6e-28 Score=209.51 Aligned_cols=158 Identities=33% Similarity=0.579 Sum_probs=142.2
Q ss_pred cccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhc
Q 011100 273 VETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKS 352 (493)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 352 (493)
+..+.+.|..++...+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 456788899888888888888777654 34689999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecc-cHHHHHHHHHHhcCcccccc
Q 011100 353 GQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN-DVDLIHEIEAVVGKQLEEFE 431 (493)
Q Consensus 353 g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 431 (493)
|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+++.++..+++.+
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 99999999999999999999999999999999999999999999999999999999875 56788999999998888765
Q ss_pred cc
Q 011100 432 CK 433 (493)
Q Consensus 432 ~~ 433 (493)
..
T Consensus 160 ~~ 161 (172)
T 1t5i_A 160 DE 161 (172)
T ss_dssp --
T ss_pred hh
Confidence 43
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=4.3e-27 Score=211.14 Aligned_cols=158 Identities=34% Similarity=0.485 Sum_probs=142.1
Q ss_pred ceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCC
Q 011100 276 LKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQA 355 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 355 (493)
+.+.++.++...+...+..++.... .+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHC---CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 4556677777788888888776432 4789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccchH
Q 011100 356 TILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKEQ 435 (493)
Q Consensus 356 ~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (493)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+++.++..++.......
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 162 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTP 162 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCH
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887765543
Q ss_pred H
Q 011100 436 E 436 (493)
Q Consensus 436 ~ 436 (493)
.
T Consensus 163 ~ 163 (212)
T 3eaq_A 163 E 163 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=211.04 Aligned_cols=167 Identities=30% Similarity=0.462 Sum_probs=132.4
Q ss_pred cCCceEEeccccccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCC
Q 011100 258 ANKAYFYEAYEGFKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSF 337 (493)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 337 (493)
+..+..+.+.........+.+.+..++...+...+..++.. .+ +++||||+++..++.++..|...++.+..+||+
T Consensus 12 ~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~---~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 12 DLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK---TP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ----------------CCSEEEEEECCGGGHHHHHHHHHTT---SC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh---CC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34454555444445567888998888877777766666643 23 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecc-cHHHH
Q 011100 338 KSQSQRLSALHRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQN-DVDLI 416 (493)
Q Consensus 338 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-~~~~~ 416 (493)
|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 67777
Q ss_pred HHHHHHhcCccc
Q 011100 417 HEIEAVVGKQLE 428 (493)
Q Consensus 417 ~~~~~~~~~~~~ 428 (493)
..+++.+.....
T Consensus 168 ~~l~~~l~~~~~ 179 (191)
T 2p6n_A 168 MDLKALLLEAKQ 179 (191)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHccC
Confidence 888777654433
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=209.56 Aligned_cols=159 Identities=33% Similarity=0.549 Sum_probs=129.0
Q ss_pred ccccccceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHH
Q 011100 270 FKTVETLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHR 349 (493)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 349 (493)
......+.+.+..++...+...+..++.... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 3456778999999988888888888887643 24689999999999999999999999999999999999999999999
Q ss_pred hhcCCCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccc
Q 011100 350 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEE 429 (493)
Q Consensus 350 f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (493)
|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.++.....
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887655444
Q ss_pred c
Q 011100 430 F 430 (493)
Q Consensus 430 ~ 430 (493)
+
T Consensus 172 ~ 172 (185)
T 2jgn_A 172 V 172 (185)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=2.3e-26 Score=215.83 Aligned_cols=158 Identities=33% Similarity=0.481 Sum_probs=141.1
Q ss_pred cceEEEEEecCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCC
Q 011100 275 TLKQQYIFIPKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQ 354 (493)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 354 (493)
.+.+.++.++...+...+..++.... .+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE 78 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC
Confidence 35677888888888888888876544 478999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccccch
Q 011100 355 ATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFECKE 434 (493)
Q Consensus 355 ~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (493)
.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.|++|+++.+...+..+++.++..++......
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~ 158 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPT 158 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCC
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776554
Q ss_pred H
Q 011100 435 Q 435 (493)
Q Consensus 435 ~ 435 (493)
.
T Consensus 159 ~ 159 (300)
T 3i32_A 159 P 159 (300)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.4e-27 Score=206.88 Aligned_cols=154 Identities=34% Similarity=0.534 Sum_probs=136.7
Q ss_pred cceEEEEEecC-CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcC
Q 011100 275 TLKQQYIFIPK-NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSG 353 (493)
Q Consensus 275 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 353 (493)
.+.+.+..++. ..+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP---EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 35566666666 66666666666542 336899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccEEEEEecccHHHHHHHHHHhcCcccccc
Q 011100 354 QATILLATDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLEEFE 431 (493)
Q Consensus 354 ~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (493)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++...+...+..+++.++..++...
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999988888777665443
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=4.4e-25 Score=199.53 Aligned_cols=167 Identities=18% Similarity=0.146 Sum_probs=119.3
Q ss_pred cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC---CCCeEEEEEcccHHHHHH-HHHHHHHhcc
Q 011100 78 LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED---PYGVLALVITPTRELAYQ-LAEQFKALGS 153 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~---~~~~~~lil~Pt~~L~~q-~~~~~~~~~~ 153 (493)
.+...|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.++||++|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 455679999999999999999999999999999999999998776542 225679999999999999 7788888765
Q ss_pred CCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCC---CCccCCcceEeeccccccccCCCHHHH-HHH
Q 011100 154 GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDI---PPVFSRTKFLVLDEADRVLDVGFEEEL-RVV 229 (493)
Q Consensus 154 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~l~~~~~vViDEah~~~~~~~~~~~-~~i 229 (493)
. ++.+..+.|+.............++|+|+||+++...+...... ...+.++++||+||||++.+.++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 67888888876543333333346899999999999888764320 134678899999999999876555444 232
Q ss_pred HHhC-------------CcCCceeeeeec
Q 011100 230 FQCL-------------PKNRQTLLFSAT 245 (493)
Q Consensus 230 ~~~~-------------~~~~~~i~~SAT 245 (493)
+... .+..+++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 156899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=2.9e-23 Score=212.35 Aligned_cols=306 Identities=16% Similarity=0.194 Sum_probs=167.8
Q ss_pred cCCCCCcHHHHhhhhh----hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 78 LGMRRPTPVQTHCIPK----ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~----i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
.|| .|+|+|.+++.. +..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l-- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL-- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG--
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc--
Confidence 467 699999998654 4578999999999999999999999765 668999999999999999888764
Q ss_pred CCCceEEEEEcCCCH--------H------------------------HH---------------HHHhcCCCcEEEECc
Q 011100 154 GLHLRCEVVVGGMDL--------L------------------------TQ---------------AKSLMNRPHVVIATP 186 (493)
Q Consensus 154 ~~~~~~~~~~g~~~~--------~------------------------~~---------------~~~~~~~~~Iiv~Tp 186 (493)
++++..+.|.... . .. .+.....++|+|+|+
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 4555544443210 0 00 001123579999999
Q ss_pred chHHHHHhcCC-C---CCCccCCcceEeeccccccccCC-----------CHHHHHHH----------------------
Q 011100 187 GRIKVLLEEDP-D---IPPVFSRTKFLVLDEADRVLDVG-----------FEEELRVV---------------------- 229 (493)
Q Consensus 187 ~~l~~~l~~~~-~---~~~~l~~~~~vViDEah~~~~~~-----------~~~~~~~i---------------------- 229 (493)
..+.+...... . ....+....+|||||||++.+.. +......+
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 232 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLI 232 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 99876433211 0 00123566899999999984310 00000000
Q ss_pred --HHhC-CcC----------------------------------------------------------------------
Q 011100 230 --FQCL-PKN---------------------------------------------------------------------- 236 (493)
Q Consensus 230 --~~~~-~~~---------------------------------------------------------------------- 236 (493)
+... +.+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l 312 (540)
T 2vl7_A 233 DYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLI 312 (540)
T ss_dssp HHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHH
T ss_pred HHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHH
Confidence 0000 000
Q ss_pred ---Cc----eeeeeecccchHHHHHHHhcCCceEEeccccccccccceEEEEE--ecCCcch-----HHHHHHHHhhhhc
Q 011100 237 ---RQ----TLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVETLKQQYIF--IPKNVKD-----VYLMHVLSKMEDM 302 (493)
Q Consensus 237 ---~~----~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~l~~~~~~~~~~ 302 (493)
.. +|++|||+.+.. .....+...... .-.....+.. ++..... ..+...+..+...
T Consensus 313 ~~~~~~~~~~IltSATL~p~~------~~~~~f~~~~~~----~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~ 382 (540)
T 2vl7_A 313 EDALNVKTFKVLMSGTLPESL------TLTNSYKIVVNE----SYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYEN 382 (540)
T ss_dssp HHHTCCSSCEEEEESSCCTTC------CCTTEEEEECCC----C-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCccCCeEEEcccCCCCc------ccchhcCCchhh----eecCCcceeccccCCCcccccCHHHHHHHHHHHHHHh
Confidence 01 255555554310 000000000000 0011111111 1111111 2344444444444
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEE--EcCCCCCCCCCCC----cCeE
Q 011100 303 GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILL--ATDVASRGLDIPT----VDLV 376 (493)
Q Consensus 303 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv--~T~~~~~Gidi~~----v~~V 376 (493)
..+++|||++|....+.++..+.. .. ...++.. ..|..+++.|+.+. .||+ +|+.+++|||+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 557899999999999999988764 22 4445543 46788999999864 6777 8899999999998 8899
Q ss_pred EEecCCCCCC------------------------------cceeeccccccCCCCccEEEEEec
Q 011100 377 LNYDIPRYPR------------------------------DYVHRVGRTARAGRGGLAVSFVTQ 410 (493)
Q Consensus 377 i~~~~p~s~~------------------------------~y~qr~GR~gR~g~~g~~~~~~~~ 410 (493)
|++++|.... .+.|.+||+-|...+--++++++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 9999995432 135889999997554334445443
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=1.3e-23 Score=197.77 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=126.2
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEV 161 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 161 (493)
+|+++|.++++.++.+++.++++|||+|||+++++++...+... ..++||++|+++|+.|+.+.+.+++...+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999999888899999999999999988887766542 3479999999999999999999997766677888
Q ss_pred EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceee
Q 011100 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241 (493)
Q Consensus 162 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 241 (493)
+.++..... ......+|+|+||+.+.... ...+.++++||+||||++.+ ..+..++..+....++++
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEE
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEE
Confidence 888765321 22356899999998764321 23467889999999999864 577788888877899999
Q ss_pred eeecccchHH
Q 011100 242 FSATMTSDLQ 251 (493)
Q Consensus 242 ~SAT~~~~~~ 251 (493)
+|||+++...
T Consensus 258 lSATp~~~~~ 267 (282)
T 1rif_A 258 LSGSLRDGKA 267 (282)
T ss_dssp ECSSCCTTST
T ss_pred EeCCCCCcch
Confidence 9999987543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.6e-23 Score=186.29 Aligned_cols=176 Identities=20% Similarity=0.195 Sum_probs=131.0
Q ss_pred HHHHHHcCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCC--CeEEEEEcccHHHHHHHHHHHH
Q 011100 72 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY--GVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 72 ~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
.+.+...+...++++|.++++.+..|+++++.||||||||+++.++++..+..... +.++++++|+++|+.|+.+.+.
T Consensus 51 ~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHH
Confidence 33333444556899999999999999999999999999999999998887665432 4589999999999999998887
Q ss_pred Hhcc-CCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccc-ccCCCH-HHH
Q 011100 150 ALGS-GLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRV-LDVGFE-EEL 226 (493)
Q Consensus 150 ~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~-~~~~~~-~~~ 226 (493)
.... ..+..+......... .....++|+|+||+++.+++... ++++++||+||||++ ++.++. ..+
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~~------l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 131 FERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEAG------IRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp HTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHHC------CTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred HHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHhh------hcCCcEEEEECCccCCcchHHHHHHH
Confidence 6543 334444332221110 01145789999999999988763 788999999999985 666665 456
Q ss_pred HHHHHhCCcCCceeeeeecccchHHHHHHHhcCCc
Q 011100 227 RVVFQCLPKNRQTLLFSATMTSDLQTLLELSANKA 261 (493)
Q Consensus 227 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 261 (493)
+.++... ++.|+++||||++... +...+.+.+
T Consensus 200 ~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 200 RDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 6666665 4789999999999766 555555444
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=1.1e-20 Score=194.09 Aligned_cols=285 Identities=16% Similarity=0.117 Sum_probs=181.4
Q ss_pred CCcHHHHhhhhh----hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 82 RPTPVQTHCIPK----ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~----i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+++|+|.+++.. +..|+++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 599999997765 4578999999999999999999999983 678999999999999999999988777788
Q ss_pred eEEEEEcCCCH---------------------------------HHHH------------------HHhcCCCcEEEECc
Q 011100 158 RCEVVVGGMDL---------------------------------LTQA------------------KSLMNRPHVVIATP 186 (493)
Q Consensus 158 ~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~Iiv~Tp 186 (493)
++..+.|+.+. .... ......++|||+||
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 88887774221 1111 22234689999999
Q ss_pred chHHHHHhcCCCCCCccCCcceEeeccccccccCCC--------------------------------------------
Q 011100 187 GRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF-------------------------------------------- 222 (493)
Q Consensus 187 ~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~-------------------------------------------- 222 (493)
..|.+...... ........+|||||||++.+ ..
T Consensus 157 ~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 157 PYFFIDRYREF--IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp HHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred hHhcCHHHHHh--cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99987654432 11224567899999998876 10
Q ss_pred -----------HHHHHHH----------------------------HH----------------------------hCCc
Q 011100 223 -----------EEELRVV----------------------------FQ----------------------------CLPK 235 (493)
Q Consensus 223 -----------~~~~~~i----------------------------~~----------------------------~~~~ 235 (493)
...+..+ +. .+..
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 0000000 00 0011
Q ss_pred C-CceeeeeecccchHHHHHHHhcCC-ceEE-eccccccccccceEEEEEecCCc----c------hHHHHHHHHhhhhc
Q 011100 236 N-RQTLLFSATMTSDLQTLLELSANK-AYFY-EAYEGFKTVETLKQQYIFIPKNV----K------DVYLMHVLSKMEDM 302 (493)
Q Consensus 236 ~-~~~i~~SAT~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~------~~~l~~~~~~~~~~ 302 (493)
. ..+|++|||+.+ ...+.....-. .... ...-....+- ..+..+.++... . ...+...+..+...
T Consensus 314 ~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 314 NELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp TTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 2 577888999876 34343333222 1110 0000001111 222222322211 1 12344444444444
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEc--CCCCCCCCCC---C--cCe
Q 011100 303 GIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLAT--DVASRGLDIP---T--VDL 375 (493)
Q Consensus 303 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T--~~~~~Gidi~---~--v~~ 375 (493)
.++.+|||++|....+.++. ..+..+..-..+++. ...++.|+.+.-.||+|| ..+++|||+| + ++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 55799999999999988886 234444333334553 456777754445899998 6999999999 3 788
Q ss_pred EEEecCCC
Q 011100 376 VLNYDIPR 383 (493)
Q Consensus 376 Vi~~~~p~ 383 (493)
||..++|.
T Consensus 466 viI~~lPf 473 (551)
T 3crv_A 466 VVIVGIPY 473 (551)
T ss_dssp EEEESCCC
T ss_pred EEEEcCCC
Confidence 99888775
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=2.5e-20 Score=169.99 Aligned_cols=137 Identities=21% Similarity=0.164 Sum_probs=111.1
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCce-EE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLR-CE 160 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~ 160 (493)
.|+++|.+++..+++++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+..+ ++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 6899999999999999999999999999999988877654 457999999999999999988873 677 77
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCcee
Q 011100 161 VVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTL 240 (493)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 240 (493)
.+.|+.. ...+|+|+||+.+....... ...+++|||||||++.+..+. .++..++ ..+++
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~~------~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l 222 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRL 222 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHHH------TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHHh------cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEE
Confidence 7777654 36799999999987665432 245789999999999776543 3445544 67889
Q ss_pred eeeecccc
Q 011100 241 LFSATMTS 248 (493)
Q Consensus 241 ~~SAT~~~ 248 (493)
++|||++.
T Consensus 223 ~LSATp~r 230 (237)
T 2fz4_A 223 GLTATFER 230 (237)
T ss_dssp EEEESCC-
T ss_pred EEecCCCC
Confidence 99999975
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.82 E-value=4.4e-20 Score=171.11 Aligned_cols=128 Identities=16% Similarity=0.250 Sum_probs=99.9
Q ss_pred cCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc-CCceeeccCCCCHHHHHHHHHHhhcC-CCe-EEEE
Q 011100 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL-DQEAVALHSFKSQSQRLSALHRFKSG-QAT-ILLA 360 (493)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~ 360 (493)
....|...+..++..+...+ .++||||++...++.+...|... |+.+..+||+++..+|..+++.|++| ..+ +|++
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~-~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEG-DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCHHHHHHHHHHHHHHhCC-CeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567777888887765544 79999999999999999999884 99999999999999999999999998 677 7889
Q ss_pred cCCCCCCCCCCCcCeEEEecCCCCCCcceeeccccccCCCCccE--EEEEeccc
Q 011100 361 TDVASRGLDIPTVDLVLNYDIPRYPRDYVHRVGRTARAGRGGLA--VSFVTQND 412 (493)
Q Consensus 361 T~~~~~Gidi~~v~~Vi~~~~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~~ 412 (493)
|+++++|+|++++++||+||+||++..|.||+||++|.|+.+.+ +.|+..+.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999999999987665 55666653
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=5.6e-19 Score=182.61 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=67.9
Q ss_pred CCcHHHHhhhhh----hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCc
Q 011100 82 RPTPVQTHCIPK----ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~----i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 157 (493)
+|+|.|.+.+.. +.+|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 589999998864 55789999999999999999999999887643 568999999999999999999888765566
Q ss_pred eEEEEEcC
Q 011100 158 RCEVVVGG 165 (493)
Q Consensus 158 ~~~~~~g~ 165 (493)
++..+.|+
T Consensus 81 ~~~~l~gr 88 (620)
T 4a15_A 81 RAIPMQGR 88 (620)
T ss_dssp CEEECCCH
T ss_pred EEEEEECC
Confidence 76666554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.94 E-value=1.4e-09 Score=112.33 Aligned_cols=146 Identities=21% Similarity=0.184 Sum_probs=90.3
Q ss_pred cHHHHhhhhhhhcCCcEEEEccCCCCch--hHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q 011100 84 TPVQTHCIPKILEGKDVLGLAQTGSGKT--AAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEV 161 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKT--l~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 161 (493)
+++|.++++.++.++.+++.|++|+||| ++++++++..+... .+.++++++||..++.++.+.+......+++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7899999999999999999999999999 55666666654322 25689999999999999988877654433322110
Q ss_pred EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceee
Q 011100 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241 (493)
Q Consensus 162 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 241 (493)
.. +... ....-..++-.+|+.. .+.... .. ...+++||||||+++ + ...+..++..++.+.|+++
T Consensus 230 ~~-~~~~-----~~~Tih~ll~~~~~~~--~~~~~~--~~-~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 230 KK-RIPE-----DASTLHRLLGAQPGSQ--RLRHHA--GN-PLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp CC-SCSC-----CCBTTTSCC-------------CT--TS-CCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEE
T ss_pred Hh-ccch-----hhhhhHhhhccCCCch--HHHhcc--CC-CCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEE
Confidence 00 0000 0000011111222211 011111 11 126789999999954 4 4677888888988888888
Q ss_pred eeec
Q 011100 242 FSAT 245 (493)
Q Consensus 242 ~SAT 245 (493)
+.-.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 7644
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.42 E-value=5.8e-07 Score=93.84 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCcHHHHhhhhhhhcCCc-EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 82 RPTPVQTHCIPKILEGKD-VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~-~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|++-|.+|+..++..++ .||+||+|||||.+..-.+.+.+.. +.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 478999999999887765 7899999999998866666665554 668999999999999998888654
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.42 E-value=1.4e-06 Score=89.09 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEV 161 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 161 (493)
.+++.|.+++..++.++.+++.|+.|+|||.+.. .++..+... +.++++++||...+..+.+... .....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~T 258 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL--GLEVGLCAPTGKAARRLGEVTG-------RTAST 258 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-------SCEEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CCeEEEecCcHHHHHHhHhhhc-------ccHHH
Confidence 4899999999999998999999999999997643 344444432 5679999999988876655331 11111
Q ss_pred EEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceee
Q 011100 162 VVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLL 241 (493)
Q Consensus 162 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 241 (493)
++. .+ . . .|+. +... ......+++|||||++++. ...+..++..++...++++
T Consensus 259 ih~---------ll-~---~---~~~~----~~~~---~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 259 VHR---------LL-G---Y---GPQG----FRHN---HLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp HHH---------HT-T---E---ETTE----ESCS---SSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEE
T ss_pred HHH---------HH-c---C---Ccch----hhhh---hcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEE
Confidence 100 00 0 0 0000 0001 1122357899999999763 3566777777776666666
Q ss_pred eee
Q 011100 242 FSA 244 (493)
Q Consensus 242 ~SA 244 (493)
+.-
T Consensus 312 vGD 314 (574)
T 3e1s_A 312 VGD 314 (574)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.35 E-value=2.1e-06 Score=89.13 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=55.2
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+..-.+ ..+... .+.++++++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346899999999998887789999999999998755433 333332 2567999999999999988887654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=5e-06 Score=88.24 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=55.2
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
..+++.|.+|+..++.+.-.+|.||+|||||.+..-.+...+.. .+.++|+++||...+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999887778999999999998755444333322 2567999999999999999988775
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.31 E-value=2.1e-06 Score=85.80 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=50.6
Q ss_pred cCCCCCcHHHHhhhhhhhcC----C-cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 011100 78 LGMRRPTPVQTHCIPKILEG----K-DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 78 ~g~~~~~~~Q~~~i~~i~~~----~-~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
+.|..|++-|.+++..++.. + .++|.|+.|||||.+.. .++..+.... ...+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG-ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC-CceEEEecCcHHHHHHHHhhh
Confidence 56788999999999976542 3 79999999999997643 4444444432 236899999988777665543
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.26 E-value=5.8e-05 Score=78.98 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=56.9
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
..+++-|.+++.. ....++|.|+.|||||.+.+--+...+... ....++|++++|+..+.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999973 355699999999999998777666666542 2345799999999999999999988753
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.22 E-value=6e-06 Score=87.52 Aligned_cols=69 Identities=25% Similarity=0.211 Sum_probs=54.5
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
..+++.|.+|+..++.+.-.+|.||+|+|||.+..- ++..+... .+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999988877799999999999987544 34444432 2567999999999999888877654
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.13 E-value=2.1e-05 Score=72.95 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=94.7
Q ss_pred cCCcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC
Q 011100 284 PKNVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV 363 (493)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 363 (493)
..+.|...+..++..+...+ .+++||++..+..+.+..+|...++....+.|.....++. -.+....+.+.|..
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~-~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYE-TETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSC-EEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HcCccHHHHHHHHHHHHhCC-CEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECC
Confidence 36778889999999888766 8999999999999999999999999999999985543221 12455666666777
Q ss_pred CCCCCC-----CCCcCeEEEecCCCCCCcc-eeeccccccCC----CCccEEEEEecccHH
Q 011100 364 ASRGLD-----IPTVDLVLNYDIPRYPRDY-VHRVGRTARAG----RGGLAVSFVTQNDVD 414 (493)
Q Consensus 364 ~~~Gid-----i~~v~~Vi~~~~p~s~~~y-~qr~GR~gR~g----~~g~~~~~~~~~~~~ 414 (493)
.+-|+| +...+.||.||..|++..- +|.+-|+.|.| +.-.++-|++.+..+
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 777786 6789999999999999885 89888888863 345678888887654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.49 E-value=0.0009 Score=64.28 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=56.6
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhcc
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS 153 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 153 (493)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++|++.-|..+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998776556689999999999988776666544443 356799999999999888887776654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.39 E-value=0.0013 Score=67.65 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=59.0
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCC
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGL 155 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 155 (493)
.|+|+|...+..+...+..++.++-|+|||.+....++..+...+ +..++++.|+...|..+.+.+..+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 489999999987755677999999999999887766665555443 5579999999999999998888776544
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.13 E-value=0.0016 Score=55.72 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|+.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997644
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.05 E-value=0.001 Score=64.77 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=60.5
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
-.++.|+.|+|||.... +.+.. ...+|++||++++..+.+.+.... . ...
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~----~------------------~~~ 212 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASG----I------------------IVA 212 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTS----C------------------CCC
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcC----c------------------ccc
Confidence 47899999999997532 22211 247999999999998887764321 0 011
Q ss_pred CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeee
Q 011100 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 244 (493)
...-|.|.+.++. +.. ....-..++|||||+-.+ +. ..+..++...+. .+++++.-
T Consensus 213 ~~~~V~T~dsfL~---~~~--~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 213 TKDNVRTVDSFLM---NYG--KGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp CTTTEEEHHHHHH---TTT--SSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEEC
T ss_pred ccceEEEeHHhhc---CCC--CCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecC
Confidence 1233667655432 221 111124689999999854 32 333344444433 44444443
No 107
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.98 E-value=0.001 Score=69.69 Aligned_cols=80 Identities=23% Similarity=0.157 Sum_probs=60.6
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHhccCC---Cc
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-DPYGVLALVITPTRELAYQLAEQFKALGSGL---HL 157 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~ 157 (493)
.+++-|.+++... +..++|.|+.|||||.+..--+...+.. .-...++|+|+.|+..+.++.+++....... ++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 4789999999753 5679999999999998877666666654 2234579999999999999999998875432 34
Q ss_pred eEEEEE
Q 011100 158 RCEVVV 163 (493)
Q Consensus 158 ~~~~~~ 163 (493)
.+..++
T Consensus 80 ~v~Tfh 85 (673)
T 1uaa_A 80 MISTFH 85 (673)
T ss_dssp EEEEHH
T ss_pred EEEeHH
Confidence 454433
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.97 E-value=0.0032 Score=53.95 Aligned_cols=39 Identities=21% Similarity=0.032 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
|+-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 5557899999999998755444333333 55788888874
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.94 E-value=0.0012 Score=56.83 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
|+-.++.|++|||||...+-.+...... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 4557889999999997755544444333 66799999874
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.91 E-value=0.00094 Score=55.14 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhHh
Q 011100 96 EGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~ 114 (493)
.++.+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778999999999999753
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.79 E-value=0.0015 Score=57.74 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
|.-+++.|++|+|||+..+-.+...... +.+++++.|...- . ....+...+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~--r---~~~~i~srlG~~~----------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDT--R---SIRNIQSRTGTSL----------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCG--G---GCSSCCCCCCCSS-----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCc--h---HHHHHHHhcCCCc-----------------
Confidence 4458889999999998755544444333 5578888776421 0 0001122222211
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccc
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVL 218 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~ 218 (493)
..+-+.+.+.+...+.... .-..+++|||||++.+.
T Consensus 67 --~~~~~~~~~~i~~~i~~~~----~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 --PSVEVESAPEILNYIMSNS----FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp --CCEEESSTHHHHHHHHSTT----SCTTCCEEEECSGGGSC
T ss_pred --cccccCCHHHHHHHHHHHh----hCCCCCEEEEecCccCc
Confidence 1223455555666555431 12357899999999743
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.75 E-value=0.0043 Score=58.85 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=27.8
Q ss_pred CcHHHHhhhhhhh----cCC---cEEEEccCCCCchhHhHHHHHHHhh
Q 011100 83 PTPVQTHCIPKIL----EGK---DVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 83 ~~~~Q~~~i~~i~----~~~---~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
++|||.+++..+. .|+ .+++.||.|+|||..+.. +...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 4788888876654 343 389999999999976554 334443
No 113
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.69 E-value=0.0025 Score=71.30 Aligned_cols=68 Identities=26% Similarity=0.265 Sum_probs=57.3
Q ss_pred CCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcCC---CCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 82 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP---YGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~---~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.+++-|.++|..- +++++|.|..|||||.+.+--++..+.... ...++|++++|+..+..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 4899999999764 778999999999999998877777776643 3457999999999999999888764
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.62 E-value=0.0024 Score=55.53 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=28.6
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
|+-.++.|+.|+|||+.++-.+...... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 3446789999999998766655555444 667999999763
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.59 E-value=0.0041 Score=65.62 Aligned_cols=70 Identities=26% Similarity=0.202 Sum_probs=56.4
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEcccHHHHHHHHHHHHHhc
Q 011100 81 RRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPTRELAYQLAEQFKALG 152 (493)
Q Consensus 81 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~ 152 (493)
..+++-|.+++... ...++|.|+.|||||.+...-+.+.+... -...++|+|+.|+..|.++.+++..+.
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 46899999999763 45799999999999998777777666542 234579999999999999999888764
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.39 E-value=0.0088 Score=56.40 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=22.6
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+..+++.||+|+|||..+-. +...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC--CCEEEEEE
Confidence 45799999999999976433 33444332 33455554
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.33 E-value=0.0041 Score=63.63 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=72.0
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceE
Q 011100 82 RPTPVQTHCIPKILEG--KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRC 159 (493)
Q Consensus 82 ~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 159 (493)
.+|.-|.+++..+..- ...++.|+-|.|||.+.-+.+.. +.. .++|.+|+.+-+..+.+....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 5789999999887763 34789999999999665554433 332 369999998755533322110
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHhCCcCCce
Q 011100 160 EVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQT 239 (493)
Q Consensus 160 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 239 (493)
.|-+..|+.+. .. ....++||||||=.+ -.+.+..++...+ .
T Consensus 240 --------------------~i~~~~Pd~~~---~~-------~~~~dlliVDEAAaI----p~pll~~ll~~~~----~ 281 (671)
T 2zpa_A 240 --------------------KFRFIAPDALL---AS-------DEQADWLVVDEAAAI----PAPLLHQLVSRFP----R 281 (671)
T ss_dssp --------------------GCCBCCHHHHH---HS-------CCCCSEEEEETGGGS----CHHHHHHHHTTSS----E
T ss_pred --------------------CeEEeCchhhh---hC-------cccCCEEEEEchhcC----CHHHHHHHHhhCC----e
Confidence 13334554422 11 234789999999976 3466666665432 5
Q ss_pred eeeeeccc
Q 011100 240 LLFSATMT 247 (493)
Q Consensus 240 i~~SAT~~ 247 (493)
++||.|..
T Consensus 282 v~~~tTv~ 289 (671)
T 2zpa_A 282 TLLTTTVQ 289 (671)
T ss_dssp EEEEEEBS
T ss_pred EEEEecCC
Confidence 67777764
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.25 E-value=0.019 Score=56.00 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=68.5
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
-+++.|++|+|||+.....+. .+... +.+++++. +.+.-+.+ .+..+....++.+.....+.+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~~--G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~d--------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKKR--GYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQN--------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHHT--TCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCSC---------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHc--CCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccCC---------
Confidence 478899999999977554333 33332 44565554 34433322 333333333554422211111
Q ss_pred CCCcEEEECcchH-HHHHhcCCCCCCccCCcceEeeccccccc---cCCCHHHHHHHHHhCCcCCceeeeeecccchHHH
Q 011100 177 NRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVL---DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQT 252 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l-~~~l~~~~~~~~~l~~~~~vViDEah~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 252 (493)
|..+ ...+... ...++++||||++.++. +..+...+..+...+.+..-++.++|+...+...
T Consensus 164 ---------p~~i~~~al~~a-----~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 164 ---------PIEIAKKGVDIF-----VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp ---------HHHHHHHHHHHT-----TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred ---------HHHHHHHHHHHH-----HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 1111 1122222 12467899999998754 3334455666666665566677788887655544
Q ss_pred HHHH
Q 011100 253 LLEL 256 (493)
Q Consensus 253 ~~~~ 256 (493)
....
T Consensus 230 ~a~~ 233 (433)
T 3kl4_A 230 LASR 233 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.24 E-value=0.011 Score=52.05 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=29.3
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
|+-.++.|+.|+|||...+-.+...... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecC
Confidence 4557889999999998766655555444 66799998875
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.23 E-value=0.015 Score=54.83 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
...++++|||+|.+........+..++...+.+.++++.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3567999999999862223344555555544455555533
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.09 E-value=0.04 Score=48.19 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=23.8
Q ss_pred CcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeee
Q 011100 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 244 (493)
...+|||||+|.+... ....+..++...+.+..+++.|.
T Consensus 102 ~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 102 PFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp SCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 4568999999987543 23445555555555555555443
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.09 E-value=0.015 Score=47.42 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCCchhHhH
Q 011100 95 LEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~ 115 (493)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 345779999999999997643
No 123
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.022 Score=53.06 Aligned_cols=26 Identities=15% Similarity=0.001 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhh
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
+.++++.||+|+|||.+.-. ++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 46799999999999977443 444443
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.01 E-value=0.014 Score=57.58 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
...+++.||+|+|||..+-. +...+.....+..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEee
Confidence 45799999999999976443 333333222233455544
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.86 E-value=0.049 Score=49.73 Aligned_cols=18 Identities=44% Similarity=0.257 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997644
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.84 E-value=0.023 Score=49.21 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=18.2
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhh
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
+.+++.||+|+|||..+.. +...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 6799999999999976433 334443
No 127
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.79 E-value=0.011 Score=50.44 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
++=.++.||+|||||.-.+-.+-+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 4558899999999996645444444443 5678999886
No 128
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.74 E-value=0.013 Score=52.36 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.++.+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999997543
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.73 E-value=0.027 Score=45.86 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..+.++++.|++|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 3457799999999999964
No 130
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.69 E-value=0.0094 Score=51.75 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
|.-.++.|+.|+|||...+-.+ ..+... +.+++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~~--g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIYA--KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHHT--TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHHc--CCceEEEEeccC
Confidence 4457889999999997655444 443332 567899999653
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.61 E-value=0.025 Score=54.42 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+..+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.59 E-value=0.03 Score=52.24 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
++++++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999976443
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.58 E-value=0.089 Score=51.27 Aligned_cols=129 Identities=19% Similarity=0.159 Sum_probs=65.1
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
-++++|++|+|||++..-.+ ..+... +.+++++. |.+.-+. +.+..+....++.+.....+.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~~--G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~d--------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQKR--GYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKD--------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHTT--TCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCC---------
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHHC--CCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCC---------
Confidence 47889999999998755433 333332 45565555 4444333 3344444444555433222211
Q ss_pred CCCcEEEECcchH-HHHHhcCCCCCCccCCcceEeeccccccccC-CCHHHHHHHHHhCCcCCceeeeeecccchHHHHH
Q 011100 177 NRPHVVIATPGRI-KVLLEEDPDIPPVFSRTKFLVLDEADRVLDV-GFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLL 254 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l-~~~l~~~~~~~~~l~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 254 (493)
|..+ ...+... .-.++++||||.+-++... ..-..+..+.....+..-++.+.||...+.....
T Consensus 167 ---------p~~i~~~al~~a-----~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 167 ---------AIKLAKEGVDYF-----KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp ---------HHHHHHHHHHHH-----HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred ---------HHHHHHHHHHHH-----HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 1111 1112111 0124678888888754322 1223344444444445557777887765554444
Q ss_pred HH
Q 011100 255 EL 256 (493)
Q Consensus 255 ~~ 256 (493)
..
T Consensus 233 ~~ 234 (443)
T 3dm5_A 233 LA 234 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.55 E-value=0.16 Score=42.90 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.||+|+|||..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 569999999999997643
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.55 E-value=0.039 Score=50.75 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=30.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhh--hhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPK--ILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|+++.-.+...+.+...-.. +. ...+.+.. +..++.+++.||+|+|||..+-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVEL-PL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH-HH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-Hh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 35677777666666666442100 00 00011111 1235679999999999997543
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.016 Score=55.97 Aligned_cols=18 Identities=39% Similarity=0.265 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
+.+++.||+|+|||....
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 569999999999997643
No 137
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.12 Score=49.66 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=33.9
Q ss_pred CccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 58 STVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
+..+|++.+=-+...+.|+.. .+..|--++.-.++ -.+.+|+.||+|+|||+.+-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHHH
Confidence 457899987556666666542 23333333322221 23679999999999997643
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.31 E-value=0.036 Score=47.46 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=70.2
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH-HHHHHHHHHHHhccCCCceEEEEEcCCCH----HHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE-LAYQLAEQFKALGSGLHLRCEVVVGGMDL----LTQA 172 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~ 172 (493)
..+++..++|.|||.+++-.++..+.. |.+++|+.=.+. ....-...+..+ ++.+...--+... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHHH
Confidence 468999999999999988888888877 777888842221 000001112222 2222211111110 0000
Q ss_pred HHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCC--HHHHHHHHHhCCcCCceeeeeecccchH
Q 011100 173 KSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGF--EEELRVVFQCLPKNRQTLLFSATMTSDL 250 (493)
Q Consensus 173 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 250 (493)
.... ...+...... ..-..+++||+||+-.....++ ...+..++...+....+|+.+--+|..+
T Consensus 102 ~~~a----------~~~l~~a~~~----l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 102 TAAC----------MAVWQHGKRM----LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp HHHH----------HHHHHHHHHH----TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHH
T ss_pred HHHH----------HHHHHHHHHH----HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHH
Confidence 0000 1111111111 0115689999999986554443 3556666666666666666655666555
Q ss_pred HHHH
Q 011100 251 QTLL 254 (493)
Q Consensus 251 ~~~~ 254 (493)
...+
T Consensus 168 ~e~A 171 (196)
T 1g5t_A 168 LDLA 171 (196)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5543
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.27 E-value=0.011 Score=55.26 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.++++.||+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997644
No 140
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.23 E-value=0.051 Score=45.97 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
...+++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4569999999999997644
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.093 Score=49.84 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=27.8
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeeeccc
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMT 247 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 247 (493)
..+.+++|+||+|. ++......+..++...+.+..+++.|-.+.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 34668999999998 444445566666666665655665554443
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.081 Score=49.49 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=24.0
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....++|+||+|.+... ....+..++...+.+..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 34578999999987543 2344555555555555555543
No 143
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.99 E-value=0.064 Score=50.89 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=24.4
Q ss_pred CcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeeee
Q 011100 205 RTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSA 244 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 244 (493)
...+|++||+|.+... ....+..++...+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 4578999999987543 23445555666555555565443
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.86 E-value=0.11 Score=48.62 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHh-hhhh-hhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTH-CIPK-ILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~-~i~~-i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|+++.-...+.+.|...=. .|.... .+.. ....+.+++.||+|+|||+.+-
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 4568888777777777654311 111100 0000 1123569999999999997644
No 145
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.76 E-value=0.23 Score=47.45 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=23.1
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
.....+|||||+|.+... ....+...+...+.+..+++.|
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 345679999999987543 2234444455444444444443
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.69 E-value=0.15 Score=48.83 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+..+++.||+|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 147
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.68 E-value=0.11 Score=54.75 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=65.4
Q ss_pred CeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-CCCCCCCCCcCeEEEe
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-ASRGLDIPTVDLVLNY 379 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidi~~v~~Vi~~ 379 (493)
.+++|.++++.-+.+.+..+.+. ++.+..+||+++..++...+..+.+|+.+|+|+|.. +...+++.++.+||.-
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 68999999999888877766654 789999999999999999999999999999999963 3456788888888874
Q ss_pred cCC
Q 011100 380 DIP 382 (493)
Q Consensus 380 ~~p 382 (493)
...
T Consensus 498 EaH 500 (780)
T 1gm5_A 498 EQH 500 (780)
T ss_dssp SCC
T ss_pred ccc
Confidence 443
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.54 E-value=0.032 Score=53.79 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999997643
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.49 E-value=0.15 Score=48.01 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 569999999999997643
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.45 E-value=0.22 Score=43.95 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=14.3
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+++.||+|+|||....
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997543
No 151
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.14 E-value=0.26 Score=45.99 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.||+|+|||..+-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.93 E-value=0.29 Score=48.13 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=30.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHH-hhhhh-hhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQT-HCIPK-ILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~-i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|++++-...+.+.|...-. .|... +.+.. ....+.+++.||+|+|||+.+-
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 4578888766666666654210 01100 00001 1223679999999999997643
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.90 E-value=0.14 Score=47.49 Aligned_cols=40 Identities=10% Similarity=0.271 Sum_probs=24.9
Q ss_pred cCCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 203 FSRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 203 l~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
....+++||||||.|.... ...+...+..-+++..+++.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 4567899999999985432 244555555544455455544
No 154
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.80 E-value=0.6 Score=39.09 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=52.1
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCc
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPV 202 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 202 (493)
.+.++||.|+++..+..++..+... ++.+..++|+.....+...+ .+..+|+|+|. .+.. ..+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~----Gid 99 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCAR----GID 99 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCT----TTC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhc----CCC
Confidence 3568999999999999888877664 68899999998766554333 35789999993 1222 234
Q ss_pred cCCcceEee
Q 011100 203 FSRTKFLVL 211 (493)
Q Consensus 203 l~~~~~vVi 211 (493)
+..+++||.
T Consensus 100 ~~~~~~Vi~ 108 (175)
T 2rb4_A 100 VKQVTIVVN 108 (175)
T ss_dssp CTTEEEEEE
T ss_pred cccCCEEEE
Confidence 667777774
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.71 E-value=0.3 Score=46.09 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=25.0
Q ss_pred CCcceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 204 SRTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 204 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
...+++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34689999999987543 3345556666655555555443
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.59 E-value=0.19 Score=49.61 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=26.2
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 95 LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
..|.-+++.|++|+|||..++..+....... +..++++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEEC
Confidence 3456689999999999976555444443322 445777764
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.47 E-value=0.16 Score=51.05 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=24.8
Q ss_pred CcceEeeccccccccCC--CHHHHHHHHHhCCcCCceeeeeecc
Q 011100 205 RTKFLVLDEADRVLDVG--FEEELRVVFQCLPKNRQTLLFSATM 246 (493)
Q Consensus 205 ~~~~vViDEah~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~ 246 (493)
...+|+|||+|.+.... ....+..++.. ....+++++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 45689999999986532 22444444444 244577777664
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.33 E-value=0.48 Score=44.99 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=29.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHH-hhhhh-hhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQT-HCIPK-ILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~-i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|+++.-...+.+.|...=. .|... +.+.. ....+.+++.||+|+|||+.+-
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTH---HHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 4568877655556555543210 00000 00000 1123569999999999997644
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.25 E-value=0.16 Score=49.89 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999997644
No 160
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.20 E-value=0.47 Score=39.20 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=52.3
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+.+.+... ++.+..++|+.........+ .+..+|+|+|. .+..+ .++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cch
Confidence 457999999999999999888776 68899999998765554332 35689999992 23332 345
Q ss_pred CCcceEeec
Q 011100 204 SRTKFLVLD 212 (493)
Q Consensus 204 ~~~~~vViD 212 (493)
.++++||.-
T Consensus 102 ~~~~~Vi~~ 110 (163)
T 2hjv_A 102 ENISLVINY 110 (163)
T ss_dssp SCCSEEEES
T ss_pred hcCCEEEEe
Confidence 667777753
No 161
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.16 E-value=0.25 Score=48.86 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=40.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccC
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG 154 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 154 (493)
.+....+.|-||||||++..-.+ .. . +..+|||+|+...|.|+++.+..++..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~---~--~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ER---H--AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HH---S--SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HH---h--CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 35568899999999997633322 21 1 335899999999999999999998643
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.11 E-value=0.063 Score=50.17 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=22.7
Q ss_pred cceEeeccccccccCCCHHHHHHHHHhCCcCCceeeee
Q 011100 206 TKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFS 243 (493)
Q Consensus 206 ~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 243 (493)
..+|||||+|.+.... ...+..++...+.+..+++.|
T Consensus 108 ~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 5789999999875432 233444555545555555544
No 163
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.08 E-value=0.2 Score=49.33 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=25.4
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.|.-+++.|++|+|||...+-.+....... +..++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 345589999999999966554444443322 445777664
No 164
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.03 E-value=0.42 Score=46.40 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=62.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCC----CCCCCCCcCeE
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEE---LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVAS----RGLDIPTVDLV 376 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~----~Gidi~~v~~V 376 (493)
..++||.++++.-+.+++..++. .++.+..+||+.+..++......+..|+.+|+|+|.-.- .-++..++++|
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~i 143 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFV 143 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEE
Confidence 36899999999999999999988 477999999999999998889999999999999996211 11445567777
Q ss_pred EEec
Q 011100 377 LNYD 380 (493)
Q Consensus 377 i~~~ 380 (493)
|.-+
T Consensus 144 ViDE 147 (414)
T 3oiy_A 144 FVDD 147 (414)
T ss_dssp EESC
T ss_pred EEeC
Confidence 7533
No 165
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.74 E-value=0.69 Score=40.18 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=52.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+.+.+... ++.+..++|+.....+...+ .+..+|+|+|. .+.. ..++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~----Gidi 97 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR----GLDI 97 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC----SSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc----CCCC
Confidence 457999999999999999888876 68899999998876654433 45689999992 2222 3445
Q ss_pred CCcceEee
Q 011100 204 SRTKFLVL 211 (493)
Q Consensus 204 ~~~~~vVi 211 (493)
.++++||.
T Consensus 98 ~~v~~Vi~ 105 (212)
T 3eaq_A 98 PQVDLVVH 105 (212)
T ss_dssp CCBSEEEE
T ss_pred ccCcEEEE
Confidence 67777763
No 166
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.68 E-value=0.78 Score=38.27 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=51.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+++.+... ++.+..++|+.....+...+ .+..+|+|+|.- +.. ..++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~----Gldi 97 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGR----GMDI 97 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CST----TCCG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhc----Ccch
Confidence 457999999999999988888776 68899999998766554332 357899999931 122 2345
Q ss_pred CCcceEee
Q 011100 204 SRTKFLVL 211 (493)
Q Consensus 204 ~~~~~vVi 211 (493)
..+++||.
T Consensus 98 ~~~~~Vi~ 105 (172)
T 1t5i_A 98 ERVNIAFN 105 (172)
T ss_dssp GGCSEEEE
T ss_pred hhCCEEEE
Confidence 66777765
No 167
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.07 E-value=0.25 Score=49.93 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+..+++.||+|+|||+.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46779999999999997533
No 168
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.01 E-value=0.85 Score=37.67 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=51.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.++++.-+..+...+... ++.+..++|+.....+...+ .+..+|+|+|. .+..+ .++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCc
Confidence 457999999999999988888775 67889999998765554332 35689999992 23332 345
Q ss_pred CCcceEeec
Q 011100 204 SRTKFLVLD 212 (493)
Q Consensus 204 ~~~~~vViD 212 (493)
..+++||.-
T Consensus 97 ~~~~~Vi~~ 105 (165)
T 1fuk_A 97 QQVSLVINY 105 (165)
T ss_dssp CSCSEEEES
T ss_pred ccCCEEEEe
Confidence 567777653
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.26 E-value=0.59 Score=46.41 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.+++.||+|+|||+.+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 3569999999999998643
No 170
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.23 E-value=2.3 Score=36.07 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=52.4
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+.+.+... ++.+..++|+....++...+ .+..+|+|+| +.+..+ .++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G----ldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG----LDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC----CCc
Confidence 346999999999999999888776 68899999998765554333 3578999999 234343 335
Q ss_pred CCcceEee
Q 011100 204 SRTKFLVL 211 (493)
Q Consensus 204 ~~~~~vVi 211 (493)
.++++||.
T Consensus 121 ~~v~~VI~ 128 (191)
T 2p6n_A 121 PAIQHVIN 128 (191)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 66777765
No 171
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.26 Score=47.89 Aligned_cols=56 Identities=23% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 57 DSTVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+..+|++.+--+...+.|... .+..|--++...++ -.+.+|+.||+|+|||+.+-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHH
Confidence 4467899998888877777542 23334334333322 23679999999999997643
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.01 E-value=1.2 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.3
Q ss_pred hhhcCCcEEEEccCCCCchhHh
Q 011100 93 KILEGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 93 ~i~~~~~~lv~a~TGsGKTl~~ 114 (493)
.+..+..+++.||+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3556788999999999999753
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.87 E-value=0.12 Score=48.15 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997543
No 174
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.43 E-value=1.4 Score=48.91 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=62.8
Q ss_pred CeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-CCCCCCCCCCcCeEEE
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-VASRGLDIPTVDLVLN 378 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~v~~Vi~ 378 (493)
.+++|.|++..-+.+.++.+.+. ++.+..+++..+..++...+..+..|..+|+|+|. .+...+++.++.+||.
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 68999999999998888777643 57788999999999999999999999999999994 5556678888887775
No 175
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.02 E-value=1.4 Score=38.20 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=53.9
Q ss_pred CeEEEEecchhhHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC------CCCCCCCCCc
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL-----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV------ASRGLDIPTV 373 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~v 373 (493)
.++||.|+++.-+.++++.++.. +..+..++|+.+...... .+..+..+|+|+|.- -...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999988888775 678889999988766543 345567899999952 1234567777
Q ss_pred CeEEEe
Q 011100 374 DLVLNY 379 (493)
Q Consensus 374 ~~Vi~~ 379 (493)
++||.-
T Consensus 160 ~~lViD 165 (220)
T 1t6n_A 160 KHFILD 165 (220)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 877753
No 176
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.58 E-value=1.8 Score=41.64 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.4
Q ss_pred CcEEE--EccCCCCchhHhH
Q 011100 98 KDVLG--LAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv--~a~TGsGKTl~~~ 115 (493)
..+++ .||.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45888 8999999997643
No 177
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.58 E-value=0.92 Score=49.96 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=62.9
Q ss_pred CCeEEEEecchhhHHHHHHHHHh---cCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-----CCCCCCCCCcCe
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEE---LDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-----ASRGLDIPTVDL 375 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~Gidi~~v~~ 375 (493)
..++||.++++.-+.+++..++. .++.+..+||+++..+|...+..+..|..+|+|+|.- +.. +++.++++
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~ 199 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDF 199 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSE
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCE
Confidence 36899999999999999999998 4678999999999988888999999999999999962 222 44567888
Q ss_pred EEEec
Q 011100 376 VLNYD 380 (493)
Q Consensus 376 Vi~~~ 380 (493)
||.-+
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 77633
No 178
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.50 E-value=0.31 Score=56.27 Aligned_cols=39 Identities=26% Similarity=0.172 Sum_probs=29.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
++.+++.||+|+|||..+...+.....+ +.+++++..-.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEccc
Confidence 6789999999999998776666655544 66788887654
No 179
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.50 E-value=1.1 Score=37.81 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=49.8
Q ss_pred CCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHH----hcCCCcEE
Q 011100 107 GSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKS----LMNRPHVV 182 (493)
Q Consensus 107 GsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ii 182 (493)
.+.|.. ++.-++.. ...+.++||.|+++.-+..+.+.+... ++.+..++|+.....+... ..+..+|+
T Consensus 29 ~~~K~~-~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHH-HHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHH-HHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 345653 23334433 223567999999999999988888775 6888899998764433222 13678899
Q ss_pred EECcchHHHHHhcCCCCCCccCCcceEee
Q 011100 183 IATPGRIKVLLEEDPDIPPVFSRTKFLVL 211 (493)
Q Consensus 183 v~Tp~~l~~~l~~~~~~~~~l~~~~~vVi 211 (493)
|+|. .+..+ .++.++++||.
T Consensus 101 vaT~-----~~~~G----ldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA-----VAARG----LDISNVKHVIN 120 (185)
T ss_dssp EEEC---------------CCCSBSEEEE
T ss_pred EEcC-----hhhcC----CCcccCCEEEE
Confidence 9992 22222 23556677765
No 180
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.39 E-value=2.8 Score=42.36 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=61.1
Q ss_pred HHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHH
Q 011100 116 LPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKV 191 (493)
Q Consensus 116 l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~ 191 (493)
-.+...+.....+.++||.|+++.-+..+++.+...+.. ++.+..++|+.....+...+ .+..+|+|+|.
T Consensus 327 ~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~----- 400 (563)
T 3i5x_A 327 EHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD----- 400 (563)
T ss_dssp HHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----
T ss_pred HHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----
Confidence 333444444344678999999999999999999876542 67888999998766554332 36789999993
Q ss_pred HHhcCCCCCCccCCcceEeecc
Q 011100 192 LLEEDPDIPPVFSRTKFLVLDE 213 (493)
Q Consensus 192 ~l~~~~~~~~~l~~~~~vViDE 213 (493)
.+..+ .++.++++||.-.
T Consensus 401 ~~~~G----iDip~v~~VI~~~ 418 (563)
T 3i5x_A 401 VGARG----MDFPNVHEVLQIG 418 (563)
T ss_dssp GGTSS----CCCTTCCEEEEES
T ss_pred hhhcC----CCcccCCEEEEEC
Confidence 33333 4466778877543
No 181
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.28 E-value=0.31 Score=47.75 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
...+++|.|+||||||... ..++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--CCcEEEEeCCCchhH
Confidence 4578999999999999874 3344333332 556888889888753
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.72 E-value=2.7 Score=38.52 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
++-+.+.++.|+|||.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577789999999976443
No 183
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.50 E-value=1.7 Score=40.05 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=51.3
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+++.+... ++.+..++|+.....+...+ .+..+|+|+|. .+.. ...+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~----Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR----GLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC----STTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc----Cccc
Confidence 457999999999888888777654 78899999998765554333 46789999992 2222 3456
Q ss_pred CCcceEee
Q 011100 204 SRTKFLVL 211 (493)
Q Consensus 204 ~~~~~vVi 211 (493)
.++++||.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 67777764
No 184
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.19 E-value=3.8 Score=41.61 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=60.0
Q ss_pred HHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHh
Q 011100 119 LHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLE 194 (493)
Q Consensus 119 l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~ 194 (493)
...+.....+.++||.|+++.-+..+++.+...... ++.+..++|+.....+...+ .+..+|+|+|. .+.
T Consensus 279 ~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~ 352 (579)
T 3sqw_A 279 KKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA 352 (579)
T ss_dssp HHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT
T ss_pred HHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh
Confidence 333443344678999999999999999999876542 67888999998766554332 36789999993 333
Q ss_pred cCCCCCCccCCcceEeeccc
Q 011100 195 EDPDIPPVFSRTKFLVLDEA 214 (493)
Q Consensus 195 ~~~~~~~~l~~~~~vViDEa 214 (493)
.+ .++.++++||.-..
T Consensus 353 ~G----iDip~v~~VI~~~~ 368 (579)
T 3sqw_A 353 RG----MDFPNVHEVLQIGV 368 (579)
T ss_dssp SS----CCCTTCCEEEEESC
T ss_pred cC----CCcccCCEEEEcCC
Confidence 33 44667888875443
No 185
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.84 E-value=0.54 Score=44.55 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCCchhH
Q 011100 96 EGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~ 113 (493)
.+..+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344689999999999975
No 186
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.78 E-value=2.3 Score=39.69 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=31.7
Q ss_pred cceEeeccccccc-cCCCHHHHHHHHHhCCcCCceeeeeecccchHHHHHHH
Q 011100 206 TKFLVLDEADRVL-DVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLEL 256 (493)
Q Consensus 206 ~~~vViDEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 256 (493)
.+++++|.+.+.. +......+..+.+.+.++..++.+.++...+.......
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHH
Confidence 4567888887643 22344555555555556667778888877665555443
No 187
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.58 E-value=0.44 Score=46.35 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=33.3
Q ss_pred CCccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 57 DSTVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+..+|++.+=-+...+.|... .+..|--++.-.+ .-.+.+|+.||+|+|||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHHH
Confidence 3456799987656666655431 2222222222221 123679999999999997644
No 188
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.55 E-value=3.7 Score=39.41 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCc
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPV 202 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 202 (493)
.+.++||.|+++.-+..+++.+... ++.+..++|+....++...+ .+..+|+|+|. .+..+ .+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 4678999999999999998888775 68899999998865544332 35789999993 44444 34
Q ss_pred cCCcceEee
Q 011100 203 FSRTKFLVL 211 (493)
Q Consensus 203 l~~~~~vVi 211 (493)
+.++++||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 566777764
No 189
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.55 E-value=0.39 Score=42.60 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFK 149 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 149 (493)
.|.-+++.|++|+|||..+...+...... +..++++.-.. -..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC-CHHHHHHHHH
Confidence 46678999999999997655444444333 44577766432 2344554444
No 190
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.29 E-value=0.37 Score=40.34 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=41.4
Q ss_pred cHHHHhhhhhhhcCC--cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 011100 84 TPVQTHCIPKILEGK--DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAY 142 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~--~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 142 (493)
.+-|..++..++..+ -.+|.+.-|++||...+.-++...... |..+.+|+|+..-..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GREVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TCCEEEECSTTHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--CeEEEEEcCchHHHH
Confidence 356888898887654 378899999999988555544443333 778999999976444
No 191
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.15 E-value=1.1 Score=47.47 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=0.0
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCC
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNR 178 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (493)
.+++.||||+|||..+-...-..... +...+.+- +..+.......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~------------~s~~~~~~~~~-------------------- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD---EESMIRID------------MSEYMEKHSTS-------------------- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEE------------GGGGCSSCCCC--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEe------------chhcccccccc--------------------
Q ss_pred CcEEEECcchHHHHHhcCCCCCCccCCcceEeeccccccccCCCHHHHHHHHHh-----------CCcCCceeeee
Q 011100 179 PHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLDVGFEEELRVVFQC-----------LPKNRQTLLFS 243 (493)
Q Consensus 179 ~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~~~~~~~~~~i~~~-----------~~~~~~~i~~S 243 (493)
.+.+...+... ..++|+|||+|.+... ....+..++.. ...+..+|+.|
T Consensus 568 -------~~~l~~~~~~~--------~~~vl~lDEi~~~~~~-~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -------GGQLTEKVRRK--------PYSVVLLDAIEKAHPD-VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ----------CHHHHHHC--------SSSEEEEECGGGSCHH-HHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -------cchhhHHHHhC--------CCeEEEEeCccccCHH-HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
No 192
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.97 E-value=1.4 Score=44.28 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATD 362 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 362 (493)
+.+||.++++.-+......|...++.+..+|++.+..++......+..|..+++++|.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 6899999999999999999999999999999999999999999999999999999995
No 193
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.86 E-value=2.9 Score=36.89 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-----CCC-CCCCCCCc
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-----VAS-RGLDIPTV 373 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidi~~v 373 (493)
..++||.++++.-+.++.+.++.. ++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 367999999999998887777654 7888999999988766554432 478999995 222 24567788
Q ss_pred CeEEE
Q 011100 374 DLVLN 378 (493)
Q Consensus 374 ~~Vi~ 378 (493)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88776
No 194
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.71 E-value=0.71 Score=39.98 Aligned_cols=36 Identities=36% Similarity=0.382 Sum_probs=28.1
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 80 MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 80 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
+..-+.-|..++..+..|.-+.+.||.|||||+.+-
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 344455677788888888889999999999997533
No 195
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.56 E-value=1.1 Score=43.46 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCCchhH
Q 011100 97 GKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~ 113 (493)
+.-+++.||||||||+.
T Consensus 167 ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34588999999999975
No 196
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.52 E-value=1.5 Score=44.79 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=53.6
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHh--hcCCCeEEEEcC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRF--KSGQATILLATD 362 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~T~ 362 (493)
+.+||.++++.-+......|...++.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 6899999999999999999999999999999999999998888888 468899999997
No 197
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.12 E-value=0.83 Score=49.00 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.6
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
+++++.||+|+|||...-.
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5699999999999975443
No 198
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.10 E-value=0.99 Score=45.06 Aligned_cols=39 Identities=21% Similarity=0.079 Sum_probs=25.7
Q ss_pred HHHHHcCCCCCcHHHHhhhhh-hhcCCcEEEEccCCCCchhH
Q 011100 73 QTCKELGMRRPTPVQTHCIPK-ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 73 ~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKTl~ 113 (493)
..|..+|. +++.+...+.. +..|..+++.||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 33444553 34444444543 45677899999999999975
No 199
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.04 E-value=0.41 Score=42.59 Aligned_cols=52 Identities=29% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
|.-+++.|++|+|||...+-.+++.+... +..++++.-.. -..++.+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~-~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEE-RARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccC-CHHHHHHHHHHc
Confidence 45699999999999966555454443332 33466665332 234455554443
No 200
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.99 E-value=1.1 Score=43.32 Aligned_cols=56 Identities=27% Similarity=0.327 Sum_probs=33.9
Q ss_pred CCccccccCCCCHHHHHHHHH---cCCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 57 DSTVTFAGLGLAEWAVQTCKE---LGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+..+|++.+=-+.+.+.|.. +.+..|--++...++ -.+.+|+.||+|+|||+.+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHH
Confidence 446789998755555555543 223333333332221 23669999999999997543
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.93 E-value=0.86 Score=44.44 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=33.8
Q ss_pred CccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 58 STVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
+..+|++.+=-..+.+.|++. .+..|-.++.-.+ .-.+.+|+.||+|+|||+.+-
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHHH
Confidence 356898888777777777542 1222222222111 123679999999999997543
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.85 E-value=1.1 Score=41.41 Aligned_cols=54 Identities=26% Similarity=0.272 Sum_probs=30.1
Q ss_pred ccccccCCCCHHHHHHHHHcC---CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELG---MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|++++-...+.+.|...- +..+..+... .+..++.+++.||+|+|||+.+-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHHHH
Confidence 456777766666666654320 1001000000 02235679999999999997643
No 203
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.84 E-value=2.2 Score=41.41 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 57 DSTVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 57 ~~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+..+|++.+=-..+.+.|... .+..|--++...+ .-.+.+|+.||+|+|||+.+-
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHH
Confidence 3457898887656666655431 2222222222221 123669999999999997644
No 204
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.60 E-value=0.7 Score=40.44 Aligned_cols=39 Identities=26% Similarity=0.224 Sum_probs=24.3
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+..|.-+++.||+|+|||......+...... +..++++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEE
Confidence 3356778999999999996544433333222 33466654
No 205
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.59 E-value=0.83 Score=43.96 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=28.8
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
.+.++++.|+||+|||...-..+.+.... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CCEEEEEeCCcC
Confidence 56789999999999997655444444332 556777777654
No 206
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.26 E-value=6 Score=37.68 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+++.+... ++.+..++|+.....+...+ .+..+|+|+|. .+.. ..++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~----Gidi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTR----GIDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSS----SCCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc----CCCc
Confidence 557999999999999999888876 67888999998765544332 35689999993 2222 2446
Q ss_pred CCcceEee
Q 011100 204 SRTKFLVL 211 (493)
Q Consensus 204 ~~~~~vVi 211 (493)
..+++||.
T Consensus 325 p~~~~Vi~ 332 (400)
T 1s2m_A 325 QAVNVVIN 332 (400)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 67777764
No 207
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.25 E-value=11 Score=36.33 Aligned_cols=41 Identities=27% Similarity=0.237 Sum_probs=23.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHH
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELA 141 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~ 141 (493)
+-+++.++.|+|||+.....+. .+... +.+++++. +.+..+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~-~l~~~--g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL-YYKGK--GRRPLLVAADTQRPAA 141 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHTT--TCCEEEEECCSSCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHc--CCeEEEeeccccCchh
Confidence 3477789999999976544332 23322 44555544 344444
No 208
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=84.15 E-value=21 Score=36.81 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=57.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+|+.-+..+.+.+... |+++..++|+.....+...+ .+..+|+|+|- .+..+ ..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G----lDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT----CCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC----ccc
Confidence 568999999999999888888776 68888899987765554332 36789999993 22332 446
Q ss_pred CCcceEeecccccc
Q 011100 204 SRTKFLVLDEADRV 217 (493)
Q Consensus 204 ~~~~~vViDEah~~ 217 (493)
.++++||+-+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 78899999888753
No 209
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.13 E-value=0.68 Score=51.59 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=37.0
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
-+|.|..|||||.+.+--+...+..+..+.++|+|||... .-++.+.+...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~ 54 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKT 54 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHh
Confidence 4788999999999888777777766655678999999763 33344444433
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.09 E-value=1.2 Score=39.94 Aligned_cols=54 Identities=30% Similarity=0.273 Sum_probs=28.5
Q ss_pred ccccccCCCCHHHHHHHHHcC--CCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELG--MRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|+++.-.+.+.+.+...- +..+..++.-. ..-.+.+++.||+|+|||+.+-
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 456777766666666554320 00010000000 0113569999999999997543
No 211
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.08 E-value=1.1 Score=44.44 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=19.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhh
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
+.+++|.|+||||||.+.-..++..+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999775544444443
No 212
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.94 E-value=4.9 Score=35.64 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=57.2
Q ss_pred HHHHHHhhhhc-CCCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC---
Q 011100 292 LMHVLSKMEDM-GIRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV--- 363 (493)
Q Consensus 292 l~~~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~--- 363 (493)
+..++..+... ...++||.++++.-+..+++.++.. ++.+..++|+.........+ .+..+|+|+|.-
T Consensus 98 ~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 98 ALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLI 173 (249)
T ss_dssp HHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHH
Confidence 34444443333 2357999999999998888777665 77888999988876554333 256899999952
Q ss_pred --C--CCCCCCCCcCeEEE
Q 011100 364 --A--SRGLDIPTVDLVLN 378 (493)
Q Consensus 364 --~--~~Gidi~~v~~Vi~ 378 (493)
+ ..++++..+++||.
T Consensus 174 ~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 174 DHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHHHHSTTCCCTTCCEEEE
T ss_pred HHHHcCCCcCccccCEEEE
Confidence 1 24567778887776
No 213
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.83 E-value=2.9 Score=36.36 Aligned_cols=71 Identities=6% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc---CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC------CCCCCCCCCCcC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL---DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD------VASRGLDIPTVD 374 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 374 (493)
..++||.++++.-+.++++.+... +..+..++|+.+...+...+ . ...+|+|+|. .....+++.+++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 467999999999999999988875 56778888877655443332 2 3578999995 122355677777
Q ss_pred eEEE
Q 011100 375 LVLN 378 (493)
Q Consensus 375 ~Vi~ 378 (493)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 214
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.54 E-value=1.5 Score=40.75 Aligned_cols=54 Identities=13% Similarity=-0.093 Sum_probs=32.8
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
+..|.-+++.|++|+|||..++..+.+...+ +..++++.-- .-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHHH
Confidence 3345669999999999996655544444443 3567777643 2234445454443
No 215
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.44 E-value=2.7 Score=40.21 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.+++.||+|+|||+.+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997644
No 216
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.25 E-value=6.7 Score=37.08 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=55.4
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCc
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPV 202 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 202 (493)
.+.++||.++++.-+..+++.+... +..+..++|+....++...+ .+..+|+|+|. .+..+ .+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----id 308 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----ID 308 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CC
Confidence 3568999999999999998888776 67888999998765554333 35689999993 33333 44
Q ss_pred cCCcceEeecccc
Q 011100 203 FSRTKFLVLDEAD 215 (493)
Q Consensus 203 l~~~~~vViDEah 215 (493)
+.++++||.-...
T Consensus 309 ip~~~~Vi~~~~p 321 (395)
T 3pey_A 309 IPTVSMVVNYDLP 321 (395)
T ss_dssp CTTEEEEEESSCC
T ss_pred cccCCEEEEcCCC
Confidence 6678888765444
No 217
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.24 E-value=0.61 Score=39.24 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|+-+++.||+|||||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678999999999997533
No 218
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.14 E-value=7.5 Score=36.76 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=53.4
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.++++.-+..+++.+... ++.+..++|+.....+...+ .+..+|+|+|. .+.. ..++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~----Gidi 316 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGR----GMDI 316 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSS----CBCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhc----CCCc
Confidence 568999999999999998888775 67888999998765543332 35689999993 1222 3456
Q ss_pred CCcceEeeccc
Q 011100 204 SRTKFLVLDEA 214 (493)
Q Consensus 204 ~~~~~vViDEa 214 (493)
..+++||.-..
T Consensus 317 ~~~~~Vi~~~~ 327 (391)
T 1xti_A 317 ERVNIAFNYDM 327 (391)
T ss_dssp TTEEEEEESSC
T ss_pred ccCCEEEEeCC
Confidence 67788876443
No 219
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.06 E-value=1.6 Score=40.68 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=30.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHH-hhhhh-hhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQT-HCIPK-ILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~-i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|++++-.+.+.+.|...-. .|.+. +.+.. ....+.+++.||+|+|||+.+-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 4578888766777666643210 01110 00000 1123679999999999997543
No 220
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.89 E-value=3.6 Score=35.92 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=56.5
Q ss_pred HHHHHHhhh-hcCCCeEEEEecchhhHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-C
Q 011100 292 LMHVLSKME-DMGIRSAIIFVSTCRSCHLLSLLLEEL-----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-A 364 (493)
Q Consensus 292 l~~~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~ 364 (493)
+..++..+. .....++||.++++.-+.++++.++.. ++.+..++|+.+..++...+ ...+|+|+|.- +
T Consensus 79 ~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l 153 (230)
T 2oxc_A 79 STIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRI 153 (230)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHH
Confidence 344444432 223368999999999999998888775 56788899998876654433 35789999962 1
Q ss_pred -----CCCCCCCCcCeEEE
Q 011100 365 -----SRGLDIPTVDLVLN 378 (493)
Q Consensus 365 -----~~Gidi~~v~~Vi~ 378 (493)
...+++.++++||.
T Consensus 154 ~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 154 KQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp HHHHHTTSSCGGGCCEEEE
T ss_pred HHHHhcCCcccccCCEEEe
Confidence 23456667777765
No 221
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.63 E-value=3.1 Score=37.05 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999997644
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.55 E-value=1.9 Score=45.44 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhH
Q 011100 98 KDVLGLAQTGSGKTAA 113 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~ 113 (493)
+.+|+.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999975
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.53 E-value=0.57 Score=42.28 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=17.0
Q ss_pred hhcCCcEEEEccCCCCchhHh
Q 011100 94 ILEGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~ 114 (493)
+..|.-+++.||||||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446677999999999999753
No 224
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.10 E-value=1.9 Score=40.82 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
....+++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998644
No 225
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=81.81 E-value=14 Score=38.06 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=56.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+|+.-+..+.+.+... |+.+..++|+.....+...+ .+..+|+|+|- .+.. ...+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~----GlDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE----GLDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT----TCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhc----CccC
Confidence 568999999999999988888776 67888889887765554332 35689999982 2222 2346
Q ss_pred CCcceEeeccccc
Q 011100 204 SRTKFLVLDEADR 216 (493)
Q Consensus 204 ~~~~~vViDEah~ 216 (493)
.++++||+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 6788888877765
No 226
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.47 E-value=0.72 Score=39.42 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCCchhH
Q 011100 96 EGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~ 113 (493)
.++-+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356689999999999964
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.32 E-value=1.3 Score=50.62 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=56.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLM 176 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (493)
|+-+.+.+|.|||||+.++..+.+.... +..++++.+-.+|.... ++.++ +..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~~---~~~~G----v~~----------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY---ARKLG----VDI----------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH---HHHTT----CCG-----------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHHH---HHHcC----CCH-----------------
Confidence 4669999999999998866666555444 66789998877665543 44543 221
Q ss_pred CCCcEEEECcchHHHHHhcCCCCCCccCCcceEeecccccccc
Q 011100 177 NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVLDEADRVLD 219 (493)
Q Consensus 177 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vViDEah~~~~ 219 (493)
.+++++-|+.--..+.-... ...-..+++||||.+-.+..
T Consensus 1484 --~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 --DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred --HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 13666666543222211000 00013467899999887653
No 228
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=81.26 E-value=4.9 Score=38.38 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=52.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+++.+... ++.+..++|+....++...+ .+..+|+|+|. .+..+ .++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCc
Confidence 457999999999999999888876 67888999998766554433 35689999993 33333 446
Q ss_pred CCcceEee
Q 011100 204 SRTKFLVL 211 (493)
Q Consensus 204 ~~~~~vVi 211 (493)
.++++||.
T Consensus 333 p~~~~Vi~ 340 (412)
T 3fht_A 333 EQVSVVIN 340 (412)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 67788774
No 229
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.11 E-value=0.82 Score=43.46 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.3
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+..|..+++.||||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45678899999999999974
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.01 E-value=0.85 Score=38.22 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=17.7
Q ss_pred hcCCcEEEEccCCCCchhHhHH
Q 011100 95 LEGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l 116 (493)
..++.+++.|++|||||...-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 4567799999999999986443
No 231
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=80.76 E-value=0.81 Score=43.67 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 011100 95 LEGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~ 114 (493)
..|..+++.||||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667999999999999753
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.76 E-value=0.76 Score=42.91 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchhH
Q 011100 98 KDVLGLAQTGSGKTAA 113 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~ 113 (493)
+-++|.||||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3589999999999965
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.72 E-value=0.86 Score=39.00 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
.++.+++.|++|||||+..-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 466799999999999986443
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.71 E-value=0.86 Score=39.38 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|+-+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45668899999999997533
No 235
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.63 E-value=8.7 Score=37.24 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=51.1
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCccCCc
Q 011100 131 ALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVFSRT 206 (493)
Q Consensus 131 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~ 206 (493)
+||.|+++.-+..+++.+... ++.+..++|+....++...+ .+..+|+|+|. .+..+ .++.++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~v 369 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKNI 369 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTTC
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCcccC
Confidence 999999999999988888775 68899999998776554433 35789999993 33333 346677
Q ss_pred ceEee
Q 011100 207 KFLVL 211 (493)
Q Consensus 207 ~~vVi 211 (493)
++||.
T Consensus 370 ~~VI~ 374 (434)
T 2db3_A 370 KHVIN 374 (434)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77764
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.61 E-value=0.87 Score=39.00 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|+-+.+.||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46679999999999997533
No 237
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=80.59 E-value=3.1 Score=49.93 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-Hhhhh---hhhcCCcEEEEccCCCCchhHhHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQ-THCIP---KILEGKDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q-~~~i~---~i~~~~~~lv~a~TGsGKTl~~~l~~ 118 (493)
+...+.+.+.+.|+. +.+.+ .+++. .+.....+++.||||||||.++-..+
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 345566777778887 55554 33332 23345679999999999998866433
No 238
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.49 E-value=2.3 Score=38.79 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=29.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHH-Hhhhhhh-hcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQ-THCIPKI-LEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i-~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...|+++.=.....+.+...-. .+.. .+.+..+ ..++.+++.||+|+|||+.+-
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 3457777656666666543210 0000 0001111 124679999999999997643
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.42 E-value=1.3 Score=38.37 Aligned_cols=34 Identities=21% Similarity=0.056 Sum_probs=23.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
.|.-+++.|++|+|||..+...+. .. +..++++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~ 52 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVD 52 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEE
Confidence 456689999999999976554443 22 44566665
No 240
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=80.38 E-value=1.1 Score=41.94 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=17.1
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+..|..+++.||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44688899999999999973
No 241
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=80.25 E-value=1.3 Score=41.98 Aligned_cols=38 Identities=26% Similarity=0.155 Sum_probs=26.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.|+-+++.|++|+|||..++..+...... +..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeC
Confidence 35669999999999997766555544433 446777765
No 242
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.23 E-value=1.9 Score=43.29 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=26.4
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcC-CCCeEEEEEccc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAED-PYGVLALVITPT 137 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~-~~~~~~lil~Pt 137 (493)
.+++|.|.||||||.+.-..++..+... +...+++++=|-
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 5799999999999987655555554432 334455555454
No 243
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.16 E-value=3.7 Score=36.03 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=44.1
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-----CCCC-CCCCCCc
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-----VASR-GLDIPTV 373 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~v 373 (493)
..++||.++++..+..+++.++.. +..+..++|+..... ....+..+..+|+|+|. .+.. .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 358999999999999998888775 456666777654332 23445567789999994 2222 3566677
Q ss_pred CeEEE
Q 011100 374 DLVLN 378 (493)
Q Consensus 374 ~~Vi~ 378 (493)
++||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77765
No 244
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.09 E-value=1.2 Score=41.96 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=26.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.|+-+++.|++|+|||...+..+...... +..++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 45679999999999997655555444433 445777764
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.91 E-value=0.84 Score=42.09 Aligned_cols=17 Identities=29% Similarity=0.151 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-++|.||||||||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999996533
No 246
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=79.76 E-value=1.6 Score=38.15 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=18.3
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhh
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
++++.++.|+|||..++-.+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4889999999999875554444333
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.68 E-value=1.5 Score=40.23 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCchhHhHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~ 118 (493)
++.+++.|++|+|||+.....+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4558889999999997655433
No 248
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=79.65 E-value=0.93 Score=42.82 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=19.6
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|-+ ++.-|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4455677877 777899999999774
No 249
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.50 E-value=1 Score=37.92 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
.+.+++.|++|||||...-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45689999999999986543
No 250
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.44 E-value=0.89 Score=41.85 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-++|+||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999996533
No 251
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=79.43 E-value=2.8 Score=37.66 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCCCcHHHH-hhhhhhhcCC-----cEEEEccCCCCchhHhH
Q 011100 69 EWAVQTCKELGMRRPTPVQT-HCIPKILEGK-----DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 69 ~~l~~~l~~~g~~~~~~~Q~-~~i~~i~~~~-----~~lv~a~TGsGKTl~~~ 115 (493)
..+.+.|+-.|+. +++- .++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4777888777876 4443 3345566553 39999999999997655
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=79.35 E-value=0.98 Score=38.83 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=17.7
Q ss_pred hhcCCcEEEEccCCCCchhHhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
+..++-++++||+|||||...-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 4466779999999999997543
No 253
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.34 E-value=6.3 Score=33.39 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=50.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc--CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-----CC-CCCCCCCCcCe
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL--DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-----VA-SRGLDIPTVDL 375 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v~~ 375 (493)
..++||.++++..+..+++.+... ...+..++|+.........+. ...+|+|+|. .+ ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 367999999999999999998877 356778888877654433332 2578999995 11 22456677787
Q ss_pred EEE
Q 011100 376 VLN 378 (493)
Q Consensus 376 Vi~ 378 (493)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 254
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.28 E-value=0.58 Score=42.55 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=26.2
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHH-Hhhhhhh--hcCCcEEEEccCCCCchhH
Q 011100 59 TVTFAGLGLAEWAVQTCKELGMRRPTPVQ-THCIPKI--LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i--~~~~~~lv~a~TGsGKTl~ 113 (493)
...|++++-.+.+.+.|...=. .|+. .+++..+ .-.+.+++.||+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4678888877777777654211 1111 1122211 1123499999999999975
No 255
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=79.20 E-value=2.4 Score=41.49 Aligned_cols=38 Identities=18% Similarity=-0.024 Sum_probs=27.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.|.-+++.|++|+|||..++-.+.+...+ +..+++++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 44569999999999997655555554444 556888764
No 256
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=79.15 E-value=2.5 Score=47.05 Aligned_cols=53 Identities=26% Similarity=0.147 Sum_probs=42.3
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCC---------CCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDP---------YGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~---------~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
..+|.|..|||||.+...-++..+...+ ....+|+|+=|+.-+.++.+++...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3599999999999998888888776421 2346999999999999888877654
No 257
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=78.98 E-value=1.1 Score=41.82 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=19.7
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHhH
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~~ 115 (493)
.+..+++|.+ ++..|.||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 3445667877 7789999999998743
No 258
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.73 E-value=1.5 Score=38.76 Aligned_cols=25 Identities=44% Similarity=0.402 Sum_probs=18.9
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~ 118 (493)
+..|.-+.+.||+|||||+.+...+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4456779999999999997654433
No 259
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=78.69 E-value=5.1 Score=39.19 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=21.5
Q ss_pred hhhhhcCCcEEEEccCCCCchhHhHHHHH
Q 011100 91 IPKILEGKDVLGLAQTGSGKTAAFALPIL 119 (493)
Q Consensus 91 i~~i~~~~~~lv~a~TGsGKTl~~~l~~l 119 (493)
+..+..|+.+++.|+.|+|||......+.
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 34456788899999999999976444333
No 260
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.63 E-value=3.2 Score=37.13 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCchhHh
Q 011100 96 EGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~ 114 (493)
.+..+++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4567999999999999753
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=78.48 E-value=1.1 Score=38.26 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|+-+++.||+|+|||...-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 56778999999999997533
No 262
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=78.43 E-value=2.7 Score=39.30 Aligned_cols=51 Identities=25% Similarity=0.133 Sum_probs=31.4
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
+..|.-+++.|++|+|||..++-.+...... +..++|+..-- -..|+..++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSS-CHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCC-CHHHHHHHH
Confidence 3345569999999999997655544444432 55678876432 234444444
No 263
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=78.41 E-value=1.3 Score=41.56 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=21.4
Q ss_pred hhhhhhhcCCc--EEEEccCCCCchhHhH
Q 011100 89 HCIPKILEGKD--VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 89 ~~i~~i~~~~~--~lv~a~TGsGKTl~~~ 115 (493)
..+..+++|.+ ++..|.||||||.+..
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 35667788877 7778999999998753
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.40 E-value=1 Score=40.38 Aligned_cols=16 Identities=38% Similarity=0.183 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhHhH
Q 011100 100 VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~ 115 (493)
+++.||+|||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6889999999997543
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=78.28 E-value=1.1 Score=38.35 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCchhHhH
Q 011100 95 LEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~ 115 (493)
..|.-+++.||+|||||+..-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356678999999999997533
No 266
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=78.27 E-value=0.98 Score=44.89 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=21.7
Q ss_pred HHHhhhhhhhcCCcEEEEccCCCCchhH
Q 011100 86 VQTHCIPKILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 86 ~Q~~~i~~i~~~~~~lv~a~TGsGKTl~ 113 (493)
.-..++..+..+.++++.||+|+|||..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344455566788999999999999974
No 267
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.23 E-value=7 Score=37.38 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=52.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
..++||.|+++.-+..+++.+... ++.+..++|+....++...+ .+..+|+|+|. .+..+ .++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 342 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDV 342 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhCc----CCc
Confidence 447999999999999988888775 67888999998765544332 35789999993 33333 346
Q ss_pred CCcceEee
Q 011100 204 SRTKFLVL 211 (493)
Q Consensus 204 ~~~~~vVi 211 (493)
.++++||.
T Consensus 343 ~~v~~Vi~ 350 (410)
T 2j0s_A 343 PQVSLIIN 350 (410)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 67777775
No 268
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.22 E-value=9.4 Score=34.03 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC------CC-CCCCCCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD------VA-SRGLDIPT 372 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~-~~Gidi~~ 372 (493)
..++||.++++.-+...+..++.. +..+..++|+......... +..+ .+|+|+|. +. ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 367999999999999988888774 4567778888776654433 3333 88999994 11 23467777
Q ss_pred cCeEEE
Q 011100 373 VDLVLN 378 (493)
Q Consensus 373 v~~Vi~ 378 (493)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887775
No 269
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=78.10 E-value=4.4 Score=39.56 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=45.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECcchHHHHHhcCCCCCCccCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATPGRIKVLLEEDPDIPPVFSRTK 207 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~ 207 (493)
+.++||.||++.-+..+++.+... ++++..++|............+..+|+|+|. .+..+ .++. ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEMG----ANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTCC----TTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhee----eccC-ce
Confidence 457999999999999999888876 6788889985543333333346789999993 23333 3455 66
Q ss_pred eEe
Q 011100 208 FLV 210 (493)
Q Consensus 208 ~vV 210 (493)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.10 E-value=0.92 Score=37.84 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
++-+++.|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3558999999999997643
No 271
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.10 E-value=1.6 Score=40.64 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=31.3
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcC---------CCC----eEEEEEcccHHH-HHHHHHHHHHh
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAED---------PYG----VLALVITPTREL-AYQLAEQFKAL 151 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~---------~~~----~~~lil~Pt~~L-~~q~~~~~~~~ 151 (493)
.-+++.|++|+|||...+..+....... ..+ .+++|+.--..+ ..++.+.+..+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 5589999999999976555444432211 112 578887754322 34444444444
No 272
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.05 E-value=5.6 Score=34.71 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=48.6
Q ss_pred CCeEEEEecchhhHHHHHHHHHhcC----CceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-----CC--CCCCCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEELD----QEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-----AS--RGLDIPT 372 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gidi~~ 372 (493)
..++||.++++.-+..+++.++..+ +.+..++|+.+.......+ +..+|+|+|.- +. ..+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 3679999999999999988888754 6788889887655443332 46789999951 11 1356667
Q ss_pred cCeEEE
Q 011100 373 VDLVLN 378 (493)
Q Consensus 373 v~~Vi~ 378 (493)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777765
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.97 E-value=0.85 Score=37.73 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 274
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=77.85 E-value=1.2 Score=41.86 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=19.2
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445567877 777899999999874
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.85 E-value=1.2 Score=38.18 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|.-+.+.||+|||||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56668899999999997533
No 276
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=77.82 E-value=1.3 Score=41.68 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=21.5
Q ss_pred hhhhhhhcCCc--EEEEccCCCCchhHhH
Q 011100 89 HCIPKILEGKD--VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 89 ~~i~~i~~~~~--~lv~a~TGsGKTl~~~ 115 (493)
..+..+++|.+ ++..|.||||||.+..
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 36677788887 6778999999998753
No 277
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=77.63 E-value=1.2 Score=41.49 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=20.5
Q ss_pred hhhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 89 HCIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 89 ~~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
..+..+++|.+ ++..|.||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566778877 777999999999764
No 278
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.54 E-value=1.3 Score=39.77 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999997644
No 279
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=77.53 E-value=1.2 Score=41.94 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=18.8
Q ss_pred hhhhhcCCc--EEEEccCCCCchhHh
Q 011100 91 IPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 91 i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
+..+++|.+ ++..|.||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445667877 777899999999764
No 280
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.41 E-value=7.9 Score=38.36 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=22.3
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.++++|++|+|||..+.-.+. .+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~~--G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQRK--GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT--TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHhC--CCeEEEEec
Confidence 477889999999976554333 33332 445666653
No 281
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=77.38 E-value=1.7 Score=41.32 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=26.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
.|.-+++.|++|+|||..++..+...... +..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 34668999999999997655544444333 4457777643
No 282
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=77.36 E-value=1.3 Score=41.76 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=18.7
Q ss_pred hhhhhcCCc--EEEEccCCCCchhHh
Q 011100 91 IPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 91 i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
+..+++|.+ ++..|.||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344567876 777899999999764
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.33 E-value=2.2 Score=36.69 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhhhhhhcC----CcEEEEccCCCCchhHh
Q 011100 69 EWAVQTCKELGMRRPTPVQTHCIPKILEG----KDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 69 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~----~~~lv~a~TGsGKTl~~ 114 (493)
..+.+.|+-.|+. +... ...+..++.+ +.+++.||.|+|||..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3455555433333 3333 3344444444 35999999999999654
No 284
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.22 E-value=1.2 Score=42.21 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=19.3
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445677877 777899999999764
No 285
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.15 E-value=1.2 Score=39.66 Aligned_cols=54 Identities=28% Similarity=0.175 Sum_probs=29.0
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhhh--cCCcEEEEccCCCCchhHh
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKIL--EGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~~~~~lv~a~TGsGKTl~~ 114 (493)
+..+|+++.-.+.....++..-.. .. ...++..+- -.+.+++.||+|+|||..+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 345677776666665555432110 00 011222111 1234999999999999753
No 286
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.07 E-value=1.2 Score=41.81 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.3
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3445667877 777999999999764
No 287
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=77.05 E-value=1.3 Score=42.56 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=19.2
Q ss_pred hhhhhcCCc--EEEEccCCCCchhHhH
Q 011100 91 IPKILEGKD--VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 91 i~~i~~~~~--~lv~a~TGsGKTl~~~ 115 (493)
+..+++|-+ ++..|.||||||.+..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 344667876 7778999999998743
No 288
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=77.04 E-value=1.3 Score=41.82 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=18.7
Q ss_pred hhhhhcCCc--EEEEccCCCCchhHh
Q 011100 91 IPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 91 i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
+..+++|.+ ++..|.||||||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344567877 777899999999874
No 289
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=76.97 E-value=1.2 Score=42.32 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=18.2
Q ss_pred hhhhcCCc--EEEEccCCCCchhHh
Q 011100 92 PKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 92 ~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
..+++|.+ ++..|.||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567877 777899999999764
No 290
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.95 E-value=5.1 Score=37.77 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.+++.||+|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997644
No 291
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=76.91 E-value=1.2 Score=41.89 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=19.7
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455678877 677899999999874
No 292
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=76.88 E-value=1.4 Score=41.73 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=18.8
Q ss_pred hhhhhcCCc--EEEEccCCCCchhHh
Q 011100 91 IPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 91 i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
+..+++|.+ ++..|.||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344667877 777999999999874
No 293
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=76.87 E-value=9.5 Score=32.25 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=49.6
Q ss_pred CeEEEEecchhhHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-----CC-CCCCCCCc
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL-----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-----AS-RGLDIPTV 373 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~-~Gidi~~v 373 (493)
.++||.++++.-+..+++.+... +..+..++|+.+..+.... + .+..+|+|+|.- +. ..+++.++
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 147 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDHV 147 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcccC
Confidence 57999999999999888887764 5677888998876654322 2 356789999961 22 23456677
Q ss_pred CeEEE
Q 011100 374 DLVLN 378 (493)
Q Consensus 374 ~~Vi~ 378 (493)
++||.
T Consensus 148 ~~lVi 152 (206)
T 1vec_A 148 QMIVL 152 (206)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77765
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.84 E-value=0.95 Score=38.26 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+++.||+|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566789999999999975
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=76.82 E-value=1.4 Score=37.18 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchhHh
Q 011100 98 KDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~ 114 (493)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999753
No 296
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=76.70 E-value=1.3 Score=41.84 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=19.5
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4555678877 677899999999764
No 297
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.69 E-value=1.3 Score=42.51 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=21.0
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHhH
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~~ 115 (493)
.+..+++|.+ ++..|.||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5667788887 6778999999998753
No 298
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=76.67 E-value=1.3 Score=41.90 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=19.2
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445677877 777899999999764
No 299
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=76.60 E-value=1.2 Score=42.05 Aligned_cols=39 Identities=28% Similarity=0.237 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTR 138 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~ 138 (493)
|.-+++.||+|+|||...+..+ ..+... +..++++..-.
T Consensus 61 G~i~~I~GppGsGKSTLal~la-~~~~~~--gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAI-AEAQKM--GGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH-HHHHHT--TCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HHHHhc--CCeEEEEeccc
Confidence 4568999999999996544433 333322 44677776543
No 300
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=76.59 E-value=1.1 Score=41.92 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=19.5
Q ss_pred hhhhhcCCcEEEEccCCCCchhHhH
Q 011100 91 IPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 91 i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
...+..+.++++.||+|+|||..+-
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3345567899999999999997533
No 301
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=76.59 E-value=1.4 Score=41.34 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=19.2
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445667877 777899999999874
No 302
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.50 E-value=3.7 Score=49.93 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-Hhhhhh---hhcCCcEEEEccCCCCchhHhHHHHHHHhhc-CCCCeEEEEEcccHHHH
Q 011100 67 LAEWAVQTCKELGMRRPTPVQ-THCIPK---ILEGKDVLGLAQTGSGKTAAFALPILHRLAE-DPYGVLALVITPTRELA 141 (493)
Q Consensus 67 l~~~l~~~l~~~g~~~~~~~Q-~~~i~~---i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~ 141 (493)
+...+.+.+.+.|+. +.+.+ .+++.. +.-...+++.||||||||.++-..+ ..+.. .+......++-|----.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~-~al~~l~~~~~~~~~iNPKait~ 950 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYL-EAIEQVDNIKSEAHVMDPKAITK 950 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHH-HHHTTTTTCEEEEEEECTTTSCH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHH-HHHHHhhCCCceEEEECCCCCch
Confidence 445666777788887 55544 344432 2334559999999999999866432 22221 11123455666654333
Q ss_pred HHH
Q 011100 142 YQL 144 (493)
Q Consensus 142 ~q~ 144 (493)
.|+
T Consensus 951 ~eL 953 (3245)
T 3vkg_A 951 DQL 953 (3245)
T ss_dssp HHH
T ss_pred hhh
Confidence 333
No 303
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=76.34 E-value=1.2 Score=41.99 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=19.4
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4445677877 777899999999764
No 304
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=76.34 E-value=3.8 Score=34.85 Aligned_cols=31 Identities=26% Similarity=0.163 Sum_probs=18.5
Q ss_pred EEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 102 GLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 102 v~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
..+.-|+|||......+... ... +.+++++=
T Consensus 7 ~s~kgG~GKTt~a~~la~~l-a~~--g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATAL-SRS--GYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHH-HHT--TCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHHHH-HHC--CCeEEEEE
Confidence 34677899998765544433 332 55566654
No 305
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.33 E-value=1.9 Score=37.95 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=19.3
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHH
Q 011100 95 LEGKDVLGLAQTGSGKTAAFALPILH 120 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l~~l~ 120 (493)
..|.-+++.||+|+|||..+...+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999765554443
No 306
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.31 E-value=2.1 Score=39.17 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=24.4
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+..|.-+++.|++|+|||......+....... +..++++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 34567799999999999975444333322221 33466654
No 307
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.31 E-value=1.7 Score=39.35 Aligned_cols=54 Identities=28% Similarity=0.189 Sum_probs=29.9
Q ss_pred CccccccCCCCHHHHHHHHHcCCCCCcHHHHhhhhhh--hcCCcEEEEccCCCCchhHh
Q 011100 58 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKI--LEGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKTl~~ 114 (493)
...+|+++.-.+.....++..-.. .. ...++..+ .-.+.+++.||+|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 345688887666666666543110 00 01122211 11234999999999999753
No 308
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=76.30 E-value=9.7 Score=33.56 Aligned_cols=70 Identities=7% Similarity=0.063 Sum_probs=49.5
Q ss_pred CeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-----C-CCCCCCCCcC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-----A-SRGLDIPTVD 374 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidi~~v~ 374 (493)
.++||.++++.-+..+++.++.. ++.+..++|+.+.......+ ....+|+|+|.- + ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 57999999999999888877764 46677788887665443322 246789999962 1 2235677788
Q ss_pred eEEE
Q 011100 375 LVLN 378 (493)
Q Consensus 375 ~Vi~ 378 (493)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=75.97 E-value=1.5 Score=36.19 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+..+++.|+.|||||+..-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4568999999999997533
No 310
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=75.86 E-value=2.1 Score=39.83 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=12.6
Q ss_pred EEEEccCCCCchhH
Q 011100 100 VLGLAQTGSGKTAA 113 (493)
Q Consensus 100 ~lv~a~TGsGKTl~ 113 (493)
+++.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 78899999999975
No 311
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=75.84 E-value=6.5 Score=43.10 Aligned_cols=90 Identities=9% Similarity=0.084 Sum_probs=62.3
Q ss_pred CcchHHHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhc----CC----ceeeccCCCCHHHHHHHHHHhhcCCCeE
Q 011100 286 NVKDVYLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEEL----DQ----EAVALHSFKSQSQRLSALHRFKSGQATI 357 (493)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~v 357 (493)
..|......++..+...+ .++||.++++.-+.+++..++.. ++ .+..+||+.+..++....+.+.. .+|
T Consensus 82 SGKTl~~lp~l~~~~~~~-~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~I 158 (1054)
T 1gku_B 82 VGKTSFGLAMSLFLALKG-KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKI 158 (1054)
T ss_dssp SCSHHHHHHHHHHHHTTS-CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSE
T ss_pred CCHHHHHHHHHHHHhhcC-CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCE
Confidence 344444444444444333 68999999999999888877754 45 78899999999988888887776 899
Q ss_pred EEEcCC-CCCCCC-CCCcCeEEE
Q 011100 358 LLATDV-ASRGLD-IPTVDLVLN 378 (493)
Q Consensus 358 lv~T~~-~~~Gid-i~~v~~Vi~ 378 (493)
+|+|.- +..-+. +.++++||.
T Consensus 159 lV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 159 VITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp EEEEHHHHHHCSTTSCCCSEEEE
T ss_pred EEEcHHHHHHHHHHhccCCEEEE
Confidence 999961 111111 446677665
No 312
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=75.82 E-value=4.7 Score=36.82 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
...+++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997644
No 313
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.80 E-value=1.3 Score=41.13 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.++++||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999997533
No 314
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=75.80 E-value=1.6 Score=38.03 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=15.9
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+..|+-+.+.||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34577799999999999975
No 315
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.78 E-value=1.9 Score=40.19 Aligned_cols=55 Identities=18% Similarity=0.039 Sum_probs=30.8
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcC---CCCeEEEEEcccHHH-HHHHHHHHHHh
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAED---PYGVLALVITPTREL-AYQLAEQFKAL 151 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~---~~~~~~lil~Pt~~L-~~q~~~~~~~~ 151 (493)
|.-+++.|++|+|||...+..+....... ..+..++++.-...+ ..++...+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46689999999999976555444432221 113467777643321 23444444443
No 316
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.78 E-value=1.2 Score=42.20 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=19.9
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556778877 777899999999774
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=75.78 E-value=1.6 Score=40.20 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
-.|.-+.+.||+|||||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567799999999999974
No 318
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=75.75 E-value=1.4 Score=41.96 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=19.1
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++..|.||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445667877 778899999999764
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=75.74 E-value=1.5 Score=36.91 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+..+++.|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998644
No 320
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=75.20 E-value=2.2 Score=39.33 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
+-+++.|++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3478899999999976444
No 321
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.93 E-value=1.5 Score=42.20 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=20.8
Q ss_pred hhhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 89 HCIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 89 ~~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
..+..+++|.+ ++..|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667788877 777899999999874
No 322
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.84 E-value=4.8 Score=34.76 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=48.9
Q ss_pred HHHHHHhhhh-cCCCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC---
Q 011100 292 LMHVLSKMED-MGIRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV--- 363 (493)
Q Consensus 292 l~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~--- 363 (493)
+..++..+.. ....++||.++++..+..+++.+... +..+..++|+.+..+.... +. ..+|+|+|.-
T Consensus 69 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 69 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVF 143 (224)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHH
Confidence 4444444432 23358999999999999888877764 5677888887765543322 22 3789999952
Q ss_pred ---CCCCCCCCCcCeEEE
Q 011100 364 ---ASRGLDIPTVDLVLN 378 (493)
Q Consensus 364 ---~~~Gidi~~v~~Vi~ 378 (493)
....+++..+++||.
T Consensus 144 ~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 144 DNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp HHHHTTSSCCTTCCEEEE
T ss_pred HHHHhCCcchhhCcEEEE
Confidence 123556667777775
No 323
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=74.80 E-value=1.6 Score=41.59 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=19.9
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHhHH
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~~l 116 (493)
.+..+++|.+ ++..|.||||||.+..-
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 3445667876 77889999999987543
No 324
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.71 E-value=11 Score=36.72 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhc-CC---ceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-CC-----CCCCCCCC
Q 011100 303 GIRSAIIFVSTCRSCHLLSLLLEEL-DQ---EAVALHSFKSQSQRLSALHRFKSGQATILLATD-VA-----SRGLDIPT 372 (493)
Q Consensus 303 ~~~~~lVf~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~ 372 (493)
...++||.|+++.-+......+.+. +. .+..+||+....++..... ..+|+|+|. .+ ...++..+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 3478999999999999888888776 55 7889999998887655443 467999995 21 12456677
Q ss_pred cCeEEEec
Q 011100 373 VDLVLNYD 380 (493)
Q Consensus 373 v~~Vi~~~ 380 (493)
+++||.-+
T Consensus 126 ~~~vIiDE 133 (494)
T 1wp9_A 126 VSLIVFDE 133 (494)
T ss_dssp CSEEEEET
T ss_pred ceEEEEEC
Confidence 88877633
No 325
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=74.61 E-value=1.6 Score=41.50 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=20.1
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5566778877 777899999999764
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.55 E-value=8.3 Score=37.44 Aligned_cols=41 Identities=29% Similarity=0.173 Sum_probs=23.9
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc--ccHHHH
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT--PTRELA 141 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~ 141 (493)
.++++++.|+|||++..-.+. .+... .+.+++++. |.+..+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~~-~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLREK-HKKKVLVVSADVYRPAA 144 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT-SCCCEEEEECCCSSTTH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHh-cCCeEEEEecCCCCccH
Confidence 477789999999977554433 33332 134555554 444433
No 327
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.47 E-value=1.5 Score=41.05 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999997543
No 328
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.41 E-value=1.5 Score=41.65 Aligned_cols=19 Identities=47% Similarity=0.580 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999997644
No 329
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.33 E-value=1.9 Score=39.53 Aligned_cols=18 Identities=17% Similarity=0.016 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
+.+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999997544
No 330
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.28 E-value=1.6 Score=36.03 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
-+++.|+.|||||+..-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986443
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.23 E-value=1.7 Score=36.58 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+.-+++.|++|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998644
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=74.19 E-value=1.5 Score=37.19 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchhH
Q 011100 98 KDVLGLAQTGSGKTAA 113 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~ 113 (493)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 333
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=73.88 E-value=1.7 Score=42.28 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=18.1
Q ss_pred hhhhcCCc--EEEEccCCCCchhHh
Q 011100 92 PKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 92 ~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
..+++|-+ ++..|.||||||.+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34567877 777899999999774
No 334
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=73.78 E-value=1 Score=37.54 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|.-+.+.||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45568899999999997544
No 335
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.70 E-value=3.9 Score=37.63 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCchhHh
Q 011100 96 EGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~ 114 (493)
....+++.|++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3567999999999999754
No 336
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.65 E-value=2.2 Score=40.10 Aligned_cols=41 Identities=12% Similarity=-0.047 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhcC---CCCeEEEEEccc
Q 011100 97 GKDVLGLAQTGSGKTAAFALPILHRLAED---PYGVLALVITPT 137 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~l~~l~~~---~~~~~~lil~Pt 137 (493)
|.-+++.|++|+|||...+..+....... ..+..++++.-.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 35589999999999976555444432211 124567777654
No 337
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.37 E-value=5.7 Score=37.68 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
...+++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997644
No 338
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=73.28 E-value=1.7 Score=36.08 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-+++.|++|||||..+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37889999999997543
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=73.26 E-value=1.3 Score=37.18 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
|..+++.|+.|||||+..-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999986443
No 340
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=73.12 E-value=4.6 Score=39.27 Aligned_cols=54 Identities=7% Similarity=-0.081 Sum_probs=41.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEEC
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~T 185 (493)
+.++||+||++.-+..+++.+... ++++..++|+...........+..+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 447999999999999999888876 678899998743322222234678999999
No 341
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.01 E-value=3.4 Score=40.51 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
++.+++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4679999999999997644
No 342
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=72.67 E-value=2 Score=36.95 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.1
Q ss_pred hhhcCCcEEEEccCCCCchhH
Q 011100 93 KILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 93 ~i~~~~~~lv~a~TGsGKTl~ 113 (493)
.+..|.-+.+.||+|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566778899999999999974
No 343
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=72.66 E-value=2.8 Score=38.98 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
+-+.+.+++|+|||+.....+. .+... +.+++++
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~-~l~~~--g~kVlli 139 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN-YYAEL--GYKVLIA 139 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH-HHHHT--TCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHC--CCeEEEE
Confidence 3477889999999976544332 23322 4455554
No 344
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.42 E-value=3.3 Score=38.15 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+.-+.+.||+|+|||+..-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457889999999997533
No 345
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=72.33 E-value=2 Score=36.63 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|.-+++.|+.|||||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999997543
No 346
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=72.28 E-value=1.5 Score=38.40 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=13.2
Q ss_pred hhcCCcEEEEccCCCCchhHhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
+..|.-+.+.||+|||||...-
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp EECCCEEEEECSCC----CHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3456778899999999997533
No 347
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.04 E-value=2.1 Score=37.34 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=15.8
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+-.|.-+++.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44677799999999999975
No 348
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=71.99 E-value=2.3 Score=39.24 Aligned_cols=41 Identities=7% Similarity=-0.105 Sum_probs=28.2
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHH
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTREL 140 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L 140 (493)
-+++.||+|+|||...+..+....... .+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchh
Confidence 488999999999977665555544331 24578888765554
No 349
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=71.96 E-value=1.7 Score=41.60 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhHhH
Q 011100 100 VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~ 115 (493)
++|.||||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 7889999999996544
No 350
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=71.93 E-value=2.2 Score=36.52 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=15.9
Q ss_pred EEEEccCCCCchhHhHHHHHH
Q 011100 100 VLGLAQTGSGKTAAFALPILH 120 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~ 120 (493)
.++.|+.|||||+.+...++.
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999865443333
No 351
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=71.91 E-value=2.4 Score=37.74 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.7
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
.|..+++.|++|||||...-+
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999986443
No 352
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.70 E-value=5.9 Score=37.88 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=43.9
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCc
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPV 202 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 202 (493)
...++||.++++.-+..+++.+... ++.+..++|+.....+...+ .+..+|+|+|. .+.. ..+
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gid 345 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLAR----GID 345 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC------CC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cccc----CCC
Confidence 3457999999999998888877664 67888899987655443332 34678999993 1222 234
Q ss_pred cCCcceEee
Q 011100 203 FSRTKFLVL 211 (493)
Q Consensus 203 l~~~~~vVi 211 (493)
+.++++||.
T Consensus 346 ip~v~~Vi~ 354 (414)
T 3eiq_A 346 VQQVSLVIN 354 (414)
T ss_dssp GGGCSCEEE
T ss_pred ccCCCEEEE
Confidence 556777764
No 353
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=74.21 E-value=0.81 Score=38.06 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=39.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEEC
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIAT 185 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~T 185 (493)
+.++||.|+++.-+..+.+.+... ++.+..++|+.........+ .+..+|+|+|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 567999999999888888777665 67888888887654433322 2457899999
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=71.33 E-value=3.4 Score=34.64 Aligned_cols=20 Identities=35% Similarity=0.245 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+.-+++.|+.|||||...-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45588999999999976443
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=70.87 E-value=1.5 Score=37.73 Aligned_cols=24 Identities=25% Similarity=0.029 Sum_probs=17.7
Q ss_pred hhhhcCCcEEEEccCCCCchhHhH
Q 011100 92 PKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 92 ~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
+.+..+.-+.+.|++|||||+.+-
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHH
Confidence 344455668899999999997533
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.74 E-value=4.7 Score=33.39 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=16.8
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhc
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAE 124 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~ 124 (493)
-+.+.|+.|||||.. +..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhHh
Confidence 377899999999964 3334444443
No 357
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=70.64 E-value=1.9 Score=35.70 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+..+++.|+.|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997644
No 358
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=70.53 E-value=5.4 Score=33.18 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=16.3
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhh
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLA 123 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~ 123 (493)
-+++.|+.|||||.. +-.++..+.
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhcc
Confidence 478899999999964 333444443
No 359
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.25 E-value=3.4 Score=38.02 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
|.-+.+.||+|+|||+..-
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3457889999999997543
No 360
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=70.23 E-value=5.7 Score=41.29 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=53.2
Q ss_pred CCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh--ccCCCceEEEEEcC--------CCHHHHHHHh--
Q 011100 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL--GSGLHLRCEVVVGG--------MDLLTQAKSL-- 175 (493)
Q Consensus 108 sGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~--~~~~~~~~~~~~g~--------~~~~~~~~~~-- 175 (493)
+.|.....-.+...+...+.+.++||.++++..+..+.+.+... +...|+++..++|+ ....++...+
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 44543322223333333332567999999999999999888764 33347888889998 6655544333
Q ss_pred --cCCCcEEEECcchHHHHHhcCCCCCCccCCcceEe
Q 011100 176 --MNRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLV 210 (493)
Q Consensus 176 --~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vV 210 (493)
.+..+|+|+|- .+.. ..++.++++||
T Consensus 460 F~~g~~~VLVaT~-----~~~~----GIDip~v~~VI 487 (699)
T 4gl2_A 460 FRTGKINLLIATT-----VAEE----GLDIKECNIVI 487 (699)
T ss_dssp HCC---CCSEEEC-----SCCT----TSCCCSCCCCE
T ss_pred HhcCCCcEEEEcc-----cccc----CCccccCCEEE
Confidence 35678999993 2222 34567777776
No 361
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.94 E-value=3.1 Score=38.19 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 59999999999997644
No 362
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=69.89 E-value=3.4 Score=40.16 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=22.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
..+++.|++|+|||..+.-.+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 358899999999997655443333222 44566665
No 363
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.89 E-value=64 Score=30.03 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
.+++.|++|+|||..+.-
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488899999999976443
No 364
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=69.75 E-value=2.4 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
+++++.|+.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999986554
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=69.74 E-value=2.5 Score=35.66 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
.+.-+++.|+.|||||+..-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456689999999999986443
No 366
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=69.62 E-value=2.1 Score=36.48 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.|.-+.+.|+.|||||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668899999999997644
No 367
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=69.39 E-value=2.3 Score=36.23 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.-+++.|+.|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998644
No 368
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.16 E-value=1.9 Score=39.32 Aligned_cols=18 Identities=39% Similarity=0.322 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.-++++||+|||||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999997543
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.80 E-value=6.4 Score=36.46 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=12.9
Q ss_pred EEEEccCCCCchhHh
Q 011100 100 VLGLAQTGSGKTAAF 114 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~ 114 (493)
+.+.||+|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999753
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=68.65 E-value=2.5 Score=36.00 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.-+++.|+.|||||+..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668999999999998644
No 371
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=68.55 E-value=4.3 Score=29.61 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=30.5
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 339 (493)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999998899999999999998777888764
No 372
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=68.47 E-value=2.2 Score=37.11 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
..+-+++.||+||||++.+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345588899999999986544
No 373
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=68.37 E-value=13 Score=37.09 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=51.0
Q ss_pred CCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEc--------CCCHHHHHH---Hh-
Q 011100 108 SGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVG--------GMDLLTQAK---SL- 175 (493)
Q Consensus 108 sGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~---~~- 175 (493)
++|... +.-++..+.....+.++||.|+++.-+..+.+.+.......++.+..++| +....++.. .+
T Consensus 370 ~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHH-HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHH-HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 555543 33334333322235689999999999999999998864333355555554 433333222 22
Q ss_pred c-CCCcEEEECcchHHHHHhcCCCCCCccCCcceEee
Q 011100 176 M-NRPHVVIATPGRIKVLLEEDPDIPPVFSRTKFLVL 211 (493)
Q Consensus 176 ~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~l~~~~~vVi 211 (493)
. +..+|+|+|. .+.. ..++..+++||.
T Consensus 449 ~~g~~~vLvaT~-----~~~~----GlDlp~v~~VI~ 476 (555)
T 3tbk_A 449 ASGDNNILIATS-----VADE----GIDIAECNLVIL 476 (555)
T ss_dssp ---CCSEEEECC-----CTTC----CEETTSCSEEEE
T ss_pred cCCCeeEEEEcc-----hhhc----CCccccCCEEEE
Confidence 2 4578999993 2222 345667777764
No 374
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=68.19 E-value=2.8 Score=34.69 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.9
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
.+++.|+.|||||...-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 588999999999986443
No 375
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=68.15 E-value=2.6 Score=35.43 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-+++.||+|||||+.+-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46889999999997544
No 376
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=67.82 E-value=3.4 Score=31.13 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=31.3
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 339 (493)
.++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 56 ~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 56 KKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp SCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 68999999999999999999999998888888764
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=67.69 E-value=2.7 Score=36.28 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
.+++.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986544
No 378
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=67.62 E-value=2.6 Score=36.19 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCchhH
Q 011100 97 GKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~ 113 (493)
|.-+.+.||+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578899999999974
No 379
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.46 E-value=14 Score=34.31 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=51.6
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh----cCCCcEEEECcchHHHHHhcCCCCCCcc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL----MNRPHVVIATPGRIKVLLEEDPDIPPVF 203 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~l 203 (493)
+.++||.|+++.-+..+++.+... ++.+..++|+.....+...+ .+..+|+|+|. .+..+ .++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id~ 304 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----IDV 304 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CCc
Confidence 567999999999999998888776 67888999988765544322 35689999993 22222 235
Q ss_pred CCcceEeec
Q 011100 204 SRTKFLVLD 212 (493)
Q Consensus 204 ~~~~~vViD 212 (493)
.++++||.-
T Consensus 305 ~~~~~Vi~~ 313 (367)
T 1hv8_A 305 NDLNCVINY 313 (367)
T ss_dssp SCCSEEEES
T ss_pred ccCCEEEEe
Confidence 566777653
No 380
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=67.26 E-value=2.6 Score=35.40 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.-+++.|+.|||||+..-.
T Consensus 6 ~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986443
No 381
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=67.24 E-value=2.5 Score=35.58 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
.-+++.|++|||||+.+-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986543
No 382
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=67.22 E-value=5 Score=36.77 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
.-+++.+++|+|||......+.. +... +.+++++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~-~~~~--g~~v~l~~ 133 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYF-YKKK--GFKVGLVG 133 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHH-HHHT--TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHC--CCeEEEEe
Confidence 34777899999999765543332 2222 44455544
No 383
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=67.00 E-value=2.8 Score=36.04 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
.+++.||+||||++.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986554
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=66.78 E-value=3.3 Score=34.53 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
..+++.|++|||||...-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3488999999999986543
No 385
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=66.76 E-value=3.8 Score=30.68 Aligned_cols=34 Identities=15% Similarity=-0.019 Sum_probs=30.2
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFK 338 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 338 (493)
.+++|||.+-..+...+..|.+.|+.+..+.|++
T Consensus 57 ~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 6899999999899999999999999888787765
No 386
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=66.68 E-value=4 Score=30.19 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=31.0
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 339 (493)
.++++||.+-..+...+..|...|+++..+.|++.
T Consensus 57 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 57 ETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 68999999999999999999999998888888653
No 387
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=66.66 E-value=24 Score=26.03 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=39.7
Q ss_pred EEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCe
Q 011100 307 AIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQAT 356 (493)
Q Consensus 307 ~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 356 (493)
.+||....+....+...++..|..++.++++.....|..-++.|......
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 45677777777888888888899999999988888888888888765443
No 388
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.63 E-value=2.9 Score=39.02 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999997533
No 389
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=66.61 E-value=3.1 Score=35.14 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+.-+++.|++|||||...-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34568999999999998644
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=66.43 E-value=2.9 Score=36.04 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
.+++.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986543
No 391
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.40 E-value=4.5 Score=42.62 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=33.3
Q ss_pred CccccccCCCCHHHHHHHHHc---CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHh
Q 011100 58 STVTFAGLGLAEWAVQTCKEL---GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 58 ~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~ 114 (493)
+...|++++.-....+.|... .+..|..++.-. +...+.+|+.||+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 346788888888888887653 222221111110 112356999999999999753
No 392
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.35 E-value=1.8 Score=40.58 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
...+++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3569999999999997543
No 393
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=66.25 E-value=12 Score=26.46 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=27.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHhcCCc-eeeccCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEELDQE-AVALHSFK 338 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 338 (493)
..++++||.+-..+...+..|.+.|+. +..+ |++
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 478999999988899999999999986 4444 664
No 394
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=66.21 E-value=3.9 Score=30.43 Aligned_cols=34 Identities=15% Similarity=-0.019 Sum_probs=30.5
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCceeeccCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFK 338 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 338 (493)
.++++||.+-..+...+..|...|+++..+.|++
T Consensus 57 ~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 6899999999899999999999999888888865
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=66.11 E-value=3.4 Score=33.38 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhHh
Q 011100 99 DVLGLAQTGSGKTAAF 114 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~ 114 (493)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3788999999999763
No 396
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.09 E-value=3.2 Score=34.77 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.9
Q ss_pred cEEEEccCCCCchhH
Q 011100 99 DVLGLAQTGSGKTAA 113 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~ 113 (493)
.+.+.||.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 397
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.01 E-value=14 Score=32.30 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=52.3
Q ss_pred HHHHHHhhhhc--CCCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC--
Q 011100 292 LMHVLSKMEDM--GIRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-- 363 (493)
Q Consensus 292 l~~~~~~~~~~--~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-- 363 (493)
+..++..+... ...++||.++++.-+..+++.+... +..+..++++..... .......+..+|+|+|.-
T Consensus 84 ~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l 160 (245)
T 3dkp_A 84 SIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRL 160 (245)
T ss_dssp HHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHH
T ss_pred HHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHH
Confidence 44445444321 2247999999999999999888875 556666665322111 112223467789999941
Q ss_pred ---C---CCCCCCCCcCeEEE
Q 011100 364 ---A---SRGLDIPTVDLVLN 378 (493)
Q Consensus 364 ---~---~~Gidi~~v~~Vi~ 378 (493)
+ ..++++.++++||.
T Consensus 161 ~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 161 IYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HHHHHSSSCSCCCTTCCEEEE
T ss_pred HHHHHhCCCCcccccCcEEEE
Confidence 1 12477788888776
No 398
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.99 E-value=5.9 Score=34.12 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=47.5
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc--------CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcC-----CCC-CCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL--------DQEAVALHSFKSQSQRLSALHRFKSGQATILLATD-----VAS-RGLD 369 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gid 369 (493)
..++||.++++.-+.++++.+++. +..+..++|+.+..... +.+ .+..+|+|+|. .+. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 357999999999998888877654 56777788876544321 111 24678999995 222 2356
Q ss_pred CCCcCeEEE
Q 011100 370 IPTVDLVLN 378 (493)
Q Consensus 370 i~~v~~Vi~ 378 (493)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777765
No 399
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=65.94 E-value=3 Score=36.22 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
..+.+.|++|||||+.+-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986443
No 400
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=65.87 E-value=2.9 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-+++.|+.|||||+..-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997644
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=65.86 E-value=4.5 Score=38.15 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.-+.+.||+|+|||+..-
T Consensus 158 ~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 347889999999997543
No 402
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=65.85 E-value=5.4 Score=35.68 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=32.2
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHh
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKAL 151 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 151 (493)
.|..+++.+.+|+|||+..+..+...+.+ +.++++++=.. -..++.+.+..+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~---Ge~~~~~~~~e-~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKS---DNLVGMFSISY-PLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHT---TCEEEEEECSS-CHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHC---CCcEEEEEEeC-CHHHHHHHHHHc
Confidence 34568888788888884445555555555 66677776432 234556666655
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=65.75 E-value=3.4 Score=33.96 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
+.+++.|+.|||||...-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999986443
No 404
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=65.70 E-value=3.3 Score=39.07 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=16.0
Q ss_pred cCCc--EEEEccCCCCchhHhH
Q 011100 96 EGKD--VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~--~lv~a~TGsGKTl~~~ 115 (493)
.|.+ ++..|.||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4766 6889999999997643
No 405
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=65.43 E-value=10 Score=37.94 Aligned_cols=72 Identities=7% Similarity=0.096 Sum_probs=48.0
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-----CCCC-C-CCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-----ASRG-L-DIPT 372 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~G-i-di~~ 372 (493)
..++||.|+++.-+......+... ++.+..+||+.+...+...+. ...+|+|+|.- +..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 478999999999888888777765 889999999887665433222 24679999962 2222 3 5677
Q ss_pred cCeEEEe
Q 011100 373 VDLVLNY 379 (493)
Q Consensus 373 v~~Vi~~ 379 (493)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8887763
No 406
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=65.42 E-value=2.3 Score=36.95 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
.|.-+.+.||+|+|||+.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456689999999999975443
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=65.34 E-value=3 Score=34.94 Aligned_cols=18 Identities=39% Similarity=0.359 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
-+++.|+.|||||...-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 408
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=65.23 E-value=3.5 Score=35.70 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+..+++.|+.|||||+..-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34589999999999986443
No 409
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.21 E-value=3 Score=36.35 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
...+++.|++|||||...-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3558999999999998643
No 410
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.10 E-value=9.3 Score=37.56 Aligned_cols=54 Identities=30% Similarity=0.334 Sum_probs=28.6
Q ss_pred ccccccCCCCHHHHHHHHHc--CCCCCcHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 59 TVTFAGLGLAEWAVQTCKEL--GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 59 ~~~~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
..+|+++.=.....+.+... .+..+..++.-. +.-.+.+++.||+|+|||+.+-
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHH
Confidence 45677776555555555432 011111111100 0112459999999999997643
No 411
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=65.07 E-value=3.3 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhHh
Q 011100 99 DVLGLAQTGSGKTAAF 114 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~ 114 (493)
-.++.||+|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4788999999999753
No 412
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=64.82 E-value=2.9 Score=35.73 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+.-+++.|+.|||||+..-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45588999999999986443
No 413
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=64.81 E-value=40 Score=35.44 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=52.6
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhc-------cCCCceEEEEEcCCCHHHHHHHhc---------CCCcEEEECcchHHH
Q 011100 128 GVLALVITPTRELAYQLAEQFKALG-------SGLHLRCEVVVGGMDLLTQAKSLM---------NRPHVVIATPGRIKV 191 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~Iiv~Tp~~l~~ 191 (493)
+..+||.+|++.-+..+++.+.... ...++.+..++|+....++...+. +...|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5679999999999999998887522 224788999999998776655442 3468999993
Q ss_pred HHhcCCCCCCccCCcceEe
Q 011100 192 LLEEDPDIPPVFSRTKFLV 210 (493)
Q Consensus 192 ~l~~~~~~~~~l~~~~~vV 210 (493)
.+..+ ..+.++.+||
T Consensus 378 iae~G----idIp~v~~VI 392 (773)
T 2xau_A 378 IAETS----LTIDGIVYVV 392 (773)
T ss_dssp HHHHT----CCCTTEEEEE
T ss_pred HHHhC----cCcCCeEEEE
Confidence 33333 3456666655
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=64.65 E-value=3.6 Score=35.64 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.6
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
..+++.|+.|||||...-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 415
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.63 E-value=6 Score=36.23 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhcC-CCeEEEEecchhhHHHHHHHHHhc-----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-
Q 011100 291 YLMHVLSKMEDMG-IRSAIIFVSTCRSCHLLSLLLEEL-----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV- 363 (493)
Q Consensus 291 ~l~~~~~~~~~~~-~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~- 363 (493)
++..++..+.... ..++||.++++.-+.+++..++.+ ++.+..++++...... .....+|+|+|.-
T Consensus 148 ~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~ 220 (300)
T 3fmo_B 148 FVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGT 220 (300)
T ss_dssp HHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHH
T ss_pred HHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHH
Confidence 3445565554332 237999999999999988888765 3455666665442211 1345689999962
Q ss_pred ----C-C-CCCCCCCcCeEEE
Q 011100 364 ----A-S-RGLDIPTVDLVLN 378 (493)
Q Consensus 364 ----~-~-~Gidi~~v~~Vi~ 378 (493)
+ . ..+++.++.++|.
T Consensus 221 l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 221 VLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp HHHHHTTTCCCCGGGCSEEEE
T ss_pred HHHHHHhcCCCChhhceEEEE
Confidence 1 1 3577888888876
No 416
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.50 E-value=12 Score=39.52 Aligned_cols=71 Identities=7% Similarity=0.110 Sum_probs=47.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC-----CCCC-C-CCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV-----ASRG-L-DIPT 372 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~G-i-di~~ 372 (493)
.+++||.|+++.-+......++.. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 478999999999988887777665 889999999987665433322 35789999952 1222 3 5667
Q ss_pred cCeEEE
Q 011100 373 VDLVLN 378 (493)
Q Consensus 373 v~~Vi~ 378 (493)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788876
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=64.26 E-value=3.8 Score=35.22 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=20.8
Q ss_pred cHHHHhhhhhhhcCCcEEEEccCCCCchhHhH
Q 011100 84 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 84 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKTl~~~ 115 (493)
++.+.... .+..+.-+++.|+.|||||...-
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 34444442 34456678899999999997644
No 418
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=64.23 E-value=2.6 Score=37.17 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.4
Q ss_pred hcCCcEEEEccCCCCchh
Q 011100 95 LEGKDVLGLAQTGSGKTA 112 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl 112 (493)
..|.-+.+.||.|||||+
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356778999999999997
No 419
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=64.23 E-value=21 Score=33.52 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCeEEEEecchhhHHHHHHHHHhc----CCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCC------CCCCCCCCCc
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEEL----DQEAVALHSFKSQSQRLSALHRFKSGQATILLATDV------ASRGLDIPTV 373 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~v 373 (493)
..++||.|+++.-+.++++.+... +..+..++|+....+....+. ..+|+|+|.- ....+++..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 368999999999998888877654 577888999988776555443 4679999941 1234556677
Q ss_pred CeEEE
Q 011100 374 DLVLN 378 (493)
Q Consensus 374 ~~Vi~ 378 (493)
++||.
T Consensus 164 ~~vIi 168 (394)
T 1fuu_A 164 KMFIL 168 (394)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77775
No 420
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=64.16 E-value=3.5 Score=37.32 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=21.0
Q ss_pred hhhhcCCcEEEEccCCCCchhHhHHHHH
Q 011100 92 PKILEGKDVLGLAQTGSGKTAAFALPIL 119 (493)
Q Consensus 92 ~~i~~~~~~lv~a~TGsGKTl~~~l~~l 119 (493)
.-+..|.-+++.||+|+|||+.+...+.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3455678899999999999976554443
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=64.15 E-value=3.6 Score=36.01 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+..+++.|++|||||...-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999986543
No 422
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=64.03 E-value=10 Score=29.41 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=30.9
Q ss_pred CeEEEEe-cchhhHHHHHHHHHhcCCceeeccCCCCH
Q 011100 305 RSAIIFV-STCRSCHLLSLLLEELDQEAVALHSFKSQ 340 (493)
Q Consensus 305 ~~~lVf~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 340 (493)
.+++||| .+-..+..++..|+..|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57778889999999999988889997753
No 423
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=64.01 E-value=3.8 Score=34.32 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.3
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHH
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRE 139 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~ 139 (493)
++|.|++|||||.-+.- +... +..++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~--~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD--APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS--CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHH-----HHhc--CCCeEEEecCCC
Confidence 68999999999954332 2222 334788877543
No 424
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=63.94 E-value=4.1 Score=34.48 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=25.7
Q ss_pred cCCcceEeeccccccc--cCCCHHHHHHHHHhCCcCCceeeeeeccc
Q 011100 203 FSRTKFLVLDEADRVL--DVGFEEELRVVFQCLPKNRQTLLFSATMT 247 (493)
Q Consensus 203 l~~~~~vViDEah~~~--~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 247 (493)
..+.+++|+||+..+- +..+...+..++.. ...+++-|.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 5677899999987763 33355555555543 233454466654
No 425
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=63.58 E-value=3.1 Score=35.65 Aligned_cols=18 Identities=28% Similarity=-0.010 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCCchhHh
Q 011100 97 GKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~ 114 (493)
+.-+.+.||+|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344778999999999753
No 426
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=63.48 E-value=3.4 Score=34.38 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
|.-+++.|+.|||||+..-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4558899999999997643
No 427
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=63.44 E-value=3.5 Score=35.06 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.|+.|||||...-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998644
No 428
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.31 E-value=3.6 Score=34.88 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+++.|++|||||+..-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999997644
No 429
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=63.17 E-value=3.5 Score=41.99 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhH
Q 011100 99 DVLGLAQTGSGKTAA 113 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~ 113 (493)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999963
No 430
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=63.16 E-value=4.2 Score=38.51 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
-.++.||+|+|||..+-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 477899999999976543
No 431
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=63.15 E-value=3.7 Score=34.92 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-+++.|+.|||||...-
T Consensus 17 ~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 432
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=62.99 E-value=3.7 Score=35.04 Aligned_cols=16 Identities=38% Similarity=0.221 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhHhH
Q 011100 100 VLGLAQTGSGKTAAFA 115 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~ 115 (493)
+.+.|+.|||||+..-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 433
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=62.94 E-value=3.6 Score=34.17 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=12.0
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+.-+++.|+.|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45588999999999986443
No 434
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.78 E-value=14 Score=38.32 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEc--------CCCHHHHHH---Hh-c-CCCcEEEECcchHHHHH
Q 011100 127 YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVG--------GMDLLTQAK---SL-M-NRPHVVIATPGRIKVLL 193 (493)
Q Consensus 127 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~---~~-~-~~~~Iiv~Tp~~l~~~l 193 (493)
.+.++||.++++.-+..+++.+.......++++..++| +....++.. .+ . +..+|+|+|- .+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 35679999999999999999988864333367777755 444333322 22 2 5678999992 12
Q ss_pred hcCCCCCCccCCcceEee
Q 011100 194 EEDPDIPPVFSRTKFLVL 211 (493)
Q Consensus 194 ~~~~~~~~~l~~~~~vVi 211 (493)
.. ..++.++++||.
T Consensus 472 ~~----GiDip~v~~VI~ 485 (696)
T 2ykg_A 472 DE----GIDIAQCNLVIL 485 (696)
T ss_dssp CC----C---CCCSEEEE
T ss_pred hc----CCcCccCCEEEE
Confidence 22 345677788775
No 435
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=62.52 E-value=3.9 Score=33.43 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999998644
No 436
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=62.45 E-value=5.8 Score=37.74 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=23.2
Q ss_pred cHHHHhhhhh---hhcCCcEEEEccCCCCchhHhHH
Q 011100 84 TPVQTHCIPK---ILEGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 84 ~~~Q~~~i~~---i~~~~~~lv~a~TGsGKTl~~~l 116 (493)
-..-.++|.. +-.|+.+.+.||+|+|||.....
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 3334455554 34688999999999999976543
No 437
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=62.33 E-value=5.1 Score=39.45 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
..++++.||+|+|||..+-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35799999999999976443
No 438
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.22 E-value=6.7 Score=33.32 Aligned_cols=18 Identities=22% Similarity=-0.097 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.-+.+.|+.|||||+.+-
T Consensus 23 ~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348889999999997543
No 439
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=62.16 E-value=5.1 Score=46.52 Aligned_cols=47 Identities=21% Similarity=0.078 Sum_probs=33.9
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 011100 95 LEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLA 145 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 145 (493)
..++.+++.+++|+|||..+...+.+.+.. +.+++++.-. ++..++.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTT-SCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEcc-ccHHHHH
Confidence 356889999999999998877777777665 6667777633 3344444
No 440
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=62.06 E-value=3.8 Score=36.20 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 011100 97 GKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l 116 (493)
+..+++.|+.|||||+..-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34589999999999986543
No 441
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=61.89 E-value=3.8 Score=34.86 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=14.0
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+.+.|+.|||||+..-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47889999999997543
No 442
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=61.85 E-value=3.7 Score=40.85 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=31.1
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 148 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 148 (493)
+..|.-+++.|++|+|||...+-.+.+..... +..++++.--- -..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSS-CHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccC-CHHHHHHHH
Confidence 33456699999999999976555444443321 34577766422 234555444
No 443
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.60 E-value=6 Score=38.99 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=20.2
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE
Q 011100 99 DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI 134 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil 134 (493)
-+.+.|++|+|||+..-. +...+... +..+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~-LAgll~~~--~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGK-LARQFEQQ--GKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHHT--TCCEEEE
T ss_pred EEEEECCCcccHHHHHHH-HHHHhhhc--CCeEEEe
Confidence 478899999999975433 22222222 4456665
No 444
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=61.57 E-value=3.9 Score=35.22 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhHhHH
Q 011100 99 DVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~l 116 (493)
.+++.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986443
No 445
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.48 E-value=8.8 Score=37.48 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=40.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEEC
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIAT 185 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~T 185 (493)
+.++||.||++.-+.++++.+... ++.+..++|............+..+|+|+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT 241 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT 241 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEEC
Confidence 347999999999999888887664 678888888765322222224678999999
No 446
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=61.39 E-value=4.2 Score=34.72 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
.+.-+++.|+.|||||+..-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 456689999999999986443
No 447
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.37 E-value=4.3 Score=38.16 Aligned_cols=22 Identities=23% Similarity=0.046 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCCchhHhHHHH
Q 011100 97 GKDVLGLAQTGSGKTAAFALPI 118 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~l~~ 118 (493)
|.-+.+.||.|||||......+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3458899999999997644433
No 448
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=61.36 E-value=8.5 Score=39.79 Aligned_cols=53 Identities=11% Similarity=-0.013 Sum_probs=39.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh-cCCCcEEEEC
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL-MNRPHVVIAT 185 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~T 185 (493)
+.++||.||++.-+..+++.+... ++++..++|... ......+ .+..+|+|+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSY-DTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSH-HHHGGGGGTCCCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHH-HHHHHHHHCCCceEEEEC
Confidence 557999999999999888877765 788999999532 2222223 4578999999
No 449
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=61.30 E-value=3.1 Score=36.67 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567789999999999973
No 450
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=61.15 E-value=3.5 Score=38.13 Aligned_cols=26 Identities=19% Similarity=-0.011 Sum_probs=18.7
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHH
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPIL 119 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l 119 (493)
+..++.+++.||+|+|||..+...+.
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 33456689999999999976554433
No 451
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=61.09 E-value=4.6 Score=36.31 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567788999999999973
No 452
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=60.84 E-value=4.3 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=14.0
Q ss_pred EEEEccCCCCchhHhHH
Q 011100 100 VLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l 116 (493)
+++.|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976443
No 453
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=60.78 E-value=5.1 Score=38.44 Aligned_cols=39 Identities=10% Similarity=-0.137 Sum_probs=24.0
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhcC---CCCeEEEEEcc
Q 011100 98 KDVLGLAQTGSGKTAAFALPILHRLAED---PYGVLALVITP 136 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l~~l~~l~~~---~~~~~~lil~P 136 (493)
.-+.+.||+|+|||......++..+... ..+..++++.-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 5589999999999976553333333211 12445777653
No 454
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=60.78 E-value=51 Score=29.40 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=48.3
Q ss_pred cCCCCchhHhHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHh---c-C-CC
Q 011100 105 QTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSL---M-N-RP 179 (493)
Q Consensus 105 ~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~-~~ 179 (493)
...+||... +.-++..+... +.++||.+.++..+..+...+.... |+.+..++|+.........+ . + ..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~~--~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALDE--GDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHHT--TCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred cccCHHHHH-HHHHHHHHHhC--CCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 346788754 44445444332 5679999999998888888776632 56778899998765544332 2 2 34
Q ss_pred c-EEEEC
Q 011100 180 H-VVIAT 185 (493)
Q Consensus 180 ~-Iiv~T 185 (493)
. ++++|
T Consensus 166 ~v~L~st 172 (271)
T 1z5z_A 166 KFIVLSV 172 (271)
T ss_dssp CEEEEEC
T ss_pred CEEEEeh
Confidence 5 45555
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=60.73 E-value=4.5 Score=34.91 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhHhHH
Q 011100 98 KDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~l 116 (493)
..+++.|+.|||||+..-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986443
No 456
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=60.62 E-value=4.4 Score=34.12 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.1
Q ss_pred EEEEccCCCCchhHhHH
Q 011100 100 VLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l 116 (493)
+++.|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=60.39 E-value=4.2 Score=34.46 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
.+.+.|++|||||...-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 458
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=60.30 E-value=4.5 Score=39.34 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
.+++++.||+|+|||+.+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3679999999999997643
No 459
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=60.24 E-value=4.7 Score=35.86 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 011100 96 EGKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~ 115 (493)
.+..+.+.||+|||||+..-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999997543
No 460
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=60.21 E-value=4.7 Score=34.52 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
.+.-+++.|+.|||||+..-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356689999999999986543
No 461
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=60.19 E-value=66 Score=27.17 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=21.5
Q ss_pred EEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEE--cccHHH
Q 011100 101 LGLAQTGSGKTAAFALPILHRLAEDPYGVLALVI--TPTREL 140 (493)
Q Consensus 101 lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil--~Pt~~L 140 (493)
++...-|.|||......+.. +... + +++++ =|...+
T Consensus 5 v~s~KGGvGKTT~a~~LA~~-la~~--g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAY-LALQ--G-ETLLIDGDPNRSA 42 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHH-HHTT--S-CEEEEEECTTCHH
T ss_pred EEcCCCCCcHHHHHHHHHHH-HHhc--C-CEEEEECCCCCCH
Confidence 45678899999876554433 3332 5 66664 355444
No 462
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=60.07 E-value=3.2 Score=39.43 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-.++.|+||+|||..+-
T Consensus 27 l~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37889999999997643
No 463
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=60.02 E-value=4.4 Score=35.18 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.2
Q ss_pred EEEEccCCCCchhHhHH
Q 011100 100 VLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l 116 (493)
+++.|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999986543
No 464
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=59.97 E-value=3.6 Score=35.63 Aligned_cols=20 Identities=35% Similarity=0.293 Sum_probs=16.4
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+..|.-+.+.||.|||||+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577789999999999974
No 465
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=59.76 E-value=4.5 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhHhH
Q 011100 97 GKDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~~ 115 (493)
+.-+++.||.|||||+..-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568999999999997543
No 466
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.63 E-value=6.1 Score=45.18 Aligned_cols=38 Identities=26% Similarity=0.155 Sum_probs=28.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEcc
Q 011100 96 EGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITP 136 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~P 136 (493)
.|+.+++.|++|+|||..++..++..+.. +.+++++.-
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~t 70 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDA 70 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEe
Confidence 46789999999999997766666665554 445666653
No 467
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=59.57 E-value=6.5 Score=29.42 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=30.1
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCc-eeeccCCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQE-AVALHSFKS 339 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 339 (493)
.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 53 ~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 53 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 67999999988899999999999985 777888653
No 468
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=59.18 E-value=4.6 Score=36.08 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
.-+++.|++|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 348899999999997644
No 469
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=59.12 E-value=2.3 Score=35.39 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-+.+.|++|||||+...
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997543
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.00 E-value=6.7 Score=39.24 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=26.1
Q ss_pred hhcCCcEEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEccc
Q 011100 94 ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPT 137 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~Pt 137 (493)
+..|.-+++.|++|+|||......+-. +... +.+++++++.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~-~~~~--G~~vi~~~~e 318 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVEN-ACAN--KERAILFAYE 318 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH-HHTT--TCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH-HHhC--CCCEEEEEEe
Confidence 445677999999999999754443322 2222 4456666653
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=58.45 E-value=3.6 Score=37.25 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999973
No 472
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=58.29 E-value=3.7 Score=36.46 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999974
No 473
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=58.18 E-value=3.7 Score=35.93 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577789999999999973
No 474
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=58.06 E-value=6.1 Score=36.43 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 011100 97 GKDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~~ 114 (493)
|.-+.+.||+|||||+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 445788999999999753
No 475
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=58.01 E-value=5.9 Score=35.51 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhH
Q 011100 97 GKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 97 ~~~~lv~a~TGsGKTl~ 113 (493)
|.-+.+.||.|||||+.
T Consensus 30 Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp SSEEEEECCTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 66788999999999974
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=57.89 E-value=4.6 Score=33.57 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 011100 96 EGKDVLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 96 ~~~~~lv~a~TGsGKTl~~~l 116 (493)
.|+-+++.|+.|+|||..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 456799999999999965443
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=57.84 E-value=3.9 Score=36.65 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.4
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+..|.-+.+.||.|||||+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577799999999999974
No 478
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=57.39 E-value=5.5 Score=33.78 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=14.1
Q ss_pred EEEEccCCCCchhHhHH
Q 011100 100 VLGLAQTGSGKTAAFAL 116 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l 116 (493)
+.+.|+.|||||++.-.
T Consensus 15 IgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 77899999999986543
No 479
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=57.08 E-value=9 Score=35.18 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchhHh
Q 011100 98 KDVLGLAQTGSGKTAAF 114 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~ 114 (493)
.-+.+.|+.|||||+.+
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34778999999999753
No 480
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=56.77 E-value=3.9 Score=35.69 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.6
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788999999999973
No 481
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.77 E-value=4.2 Score=36.19 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhHhH
Q 011100 98 KDVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 98 ~~~lv~a~TGsGKTl~~~ 115 (493)
..+++.|++|||||+.+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999997543
No 482
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.64 E-value=4.9 Score=32.82 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455688999999999964
No 483
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=56.56 E-value=5.8 Score=41.42 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=20.2
Q ss_pred hhhhhhcCCc--EEEEccCCCCchhHh
Q 011100 90 CIPKILEGKD--VLGLAQTGSGKTAAF 114 (493)
Q Consensus 90 ~i~~i~~~~~--~lv~a~TGsGKTl~~ 114 (493)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788877 667899999999764
No 484
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=56.35 E-value=62 Score=26.47 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=54.0
Q ss_pred HHHHHHHhhhhcCCCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCCHHHHHHHHHHhhcCCCeEEEEcCCCCCCCCC
Q 011100 291 YLMHVLSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKSQSQRLSALHRFKSGQATILLATDVASRGLDI 370 (493)
Q Consensus 291 ~l~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 370 (493)
.+...+.. ...+.+.+-|.|.+...+..+...|...|+.+..+.++-. . ..-.|.|.|--.+.|+.+
T Consensus 49 ~i~~~I~~-~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~---~~~~v~v~t~~~~KGlEf 115 (174)
T 3dmn_A 49 QVVDQLAM-NDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------R---LAPGVIVVPSFLAKGLEF 115 (174)
T ss_dssp HHHHHHHH-HHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------C---CCSSEEEEEGGGCTTCCE
T ss_pred HHHHHHHH-hccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------c---cCCCeEEEEccccCCcCC
Confidence 34444444 2334578999999999999999999999888777765331 1 134699999999999865
Q ss_pred CCcCeEEEecCC
Q 011100 371 PTVDLVLNYDIP 382 (493)
Q Consensus 371 ~~v~~Vi~~~~p 382 (493)
++||.+++.
T Consensus 116 ---~~V~~~~~~ 124 (174)
T 3dmn_A 116 ---DAVIVWNAN 124 (174)
T ss_dssp ---EEEEEETCB
T ss_pred ---CEEEEecCC
Confidence 566666543
No 485
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=56.25 E-value=6 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=30.0
Q ss_pred CeEEEEecchhh--HHHHHHHHHhcCCceeeccCCCC
Q 011100 305 RSAIIFVSTCRS--CHLLSLLLEELDQEAVALHSFKS 339 (493)
Q Consensus 305 ~~~lVf~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~ 339 (493)
.+++|||.+-.. +..++..|...|+.+..+.|++.
T Consensus 72 ~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 72 KTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp SEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 689999998876 88999999999999888888653
No 486
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=56.13 E-value=5.7 Score=34.22 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-+.+.|+.|||||++.-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998644
No 487
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=56.13 E-value=5.6 Score=36.29 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.9
Q ss_pred EEEEccCCCCchhHh
Q 011100 100 VLGLAQTGSGKTAAF 114 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~ 114 (493)
+.|.|++|||||+.+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999754
No 488
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=55.86 E-value=4.4 Score=36.36 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.6
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788999999999973
No 489
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=55.84 E-value=4.3 Score=35.83 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788999999999973
No 490
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.83 E-value=9.2 Score=35.43 Aligned_cols=33 Identities=33% Similarity=0.295 Sum_probs=22.9
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+++.+..|.|||.++...+...... +.+++++-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS---GKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEe
Confidence 6778999999998876655544333 55677665
No 491
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=55.80 E-value=4.3 Score=36.27 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3567788999999999973
No 492
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=55.75 E-value=3.7 Score=36.34 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999973
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=55.45 E-value=6.4 Score=33.62 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhHhH
Q 011100 99 DVLGLAQTGSGKTAAFA 115 (493)
Q Consensus 99 ~~lv~a~TGsGKTl~~~ 115 (493)
-.++.||+|+|||..+-
T Consensus 25 ~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 47889999999997643
No 494
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=55.32 E-value=16 Score=37.38 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=41.1
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q 011100 128 GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLLTQAKSLMNRPHVVIATP 186 (493)
Q Consensus 128 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp 186 (493)
+.++||.|+++.-+..+++.+... ++++..++|............+..+|+|+|.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc
Confidence 447999999999999999888876 6788888886433222222346789999993
No 495
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=55.29 E-value=9.7 Score=35.37 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=22.8
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhcCCCCeEEEEEc
Q 011100 100 VLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVIT 135 (493)
Q Consensus 100 ~lv~a~TGsGKTl~~~l~~l~~l~~~~~~~~~lil~ 135 (493)
+++.+..|.|||.+....+...... |.+++++-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~---G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV---RSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS---SSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC---CCeEEEEE
Confidence 6778999999998766555444333 56677764
No 496
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=55.12 E-value=11 Score=30.04 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=30.6
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCC-ceeeccCCCC
Q 011100 305 RSAIIFVSTCRSCHLLSLLLEELDQ-EAVALHSFKS 339 (493)
Q Consensus 305 ~~~lVf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 339 (493)
.+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 6899999998888899999999998 5888888874
No 497
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=54.81 E-value=4.7 Score=36.02 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3567788999999999973
No 498
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=54.61 E-value=21 Score=26.72 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=30.5
Q ss_pred CCeEEEEecchhhHHHHHHHHHhcCCceeeccCCCC
Q 011100 304 IRSAIIFVSTCRSCHLLSLLLEELDQEAVALHSFKS 339 (493)
Q Consensus 304 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 339 (493)
..+++|||.+-..+...+..|...|+....+.|++.
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 368999999999999999999999986677778764
No 499
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=54.40 E-value=6 Score=35.55 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCCCchhH
Q 011100 95 LEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 95 ~~~~~~lv~a~TGsGKTl~ 113 (493)
..|.-+.+.||.|||||+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999974
No 500
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=54.33 E-value=4.8 Score=36.30 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.3
Q ss_pred hhcCCcEEEEccCCCCchhH
Q 011100 94 ILEGKDVLGLAQTGSGKTAA 113 (493)
Q Consensus 94 i~~~~~~lv~a~TGsGKTl~ 113 (493)
+..|.-+.+.||.|||||+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34567789999999999973
Done!