BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011101
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 27/282 (9%)
Query: 158 NKYKGFVCDVRPDIKKKA---VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFT 214
NK+ G + PD A + G+D +G F G ++ F L +SNNF+
Sbjct: 276 NKFTGEI----PDFLSGACDTLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFS 328
Query: 215 KSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIK-NLTFLDLRFNSFSGPVPAEIFYL 272
+P T K++ L LD+S N+ G P + N+ +L LDL N+FSGP+ +
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 273 ---DLDVLFLNNNKFSQNLP---ENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLF 326
L L+L NN F+ +P N +L+++F N +G IPSS+G L ++
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKL 446
Query: 327 LNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386
N G +P E+ ++ + N LTG IP +++ +++L+ N+ G +P+
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 387 VCQLPKLVNLSLSYNYFTQVGP----ECRKLIKRKVLDVRMN 424
+ +L L L LS N F+ P +CR LI LD+ N
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLI---WLDLNTN 545
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 48/238 (20%)
Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
L +L ++N T IPK +L+ L L +SNN G P E+ + ++L +LDL
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 257 RFNSFSGPVPAEIFYLDLDV----------LFLNN------------------------N 282
N F+G +PA +F + +++ N N
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 283 KFSQNLPENIGS---TGALYVTFANNE-----------FTGPIPSSIGRAKYLLEVLFLN 328
+ S P NI S G TF NN +G IP IG YL + +
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386
N +G +P E+G L + D+ +N+L G IP + L+ + ++L+ N GP+PE+
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 127/279 (45%), Gaps = 27/279 (9%)
Query: 148 ANTWMGPDVCNKYKGFV-CDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIF 206
AN+ G +V G+V D ++K A++G +G D +S + +L
Sbjct: 157 ANSISGANVV----GWVLSDGCGELKHLAISGNKISG------DVDVS----RCVNLEFL 202
Query: 207 HANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVP 266
+SNNF+ IP + L LD+S NKL G F + L L++ N F GP+P
Sbjct: 203 DVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 267 AEIFYLDLDVLFLNNNKFSQNLPENI-GSTGALY-VTFANNEFTGPIPSSIGRAKYLLEV 324
+ L L L NKF+ +P+ + G+ L + + N F G +P G L +
Sbjct: 262 P-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 325 LFLNNFFTGCLPYEIGF-LSNSTVFDVGNNRLTGPIPHSFGCLS-SMQYLNLAMNQFYGP 382
+N F+G LP + + V D+ N +G +P S LS S+ L+L+ N F GP
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 383 VPEIVCQLPK--LVNLSLSYNYFTQVGP----ECRKLIK 415
+ +CQ PK L L L N FT P C +L+
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 8/219 (3%)
Query: 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLE-DLAIFHANSNNFTKSI-PKMTSKLK-FL 227
+K + + +D + F+G L + L L L +SNNF+ I P + K L
Sbjct: 337 LKMRGLKVLDLSFNEFSG---ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQ 286
EL + NN G P + N L L L FN SG +P+ + L L L L N
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 287 NLPENIGSTGALYVTFAN-NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNS 345
+P+ + L + N+ TG IPS + L + NN TG +P IG L N
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP 384
+ + NN +G IP G S+ +L+L N F G +P
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 37/191 (19%)
Query: 251 LTFLDLRFNSFSGPVP--------AEIFYLD--------------------LDVLFLNNN 282
LT LDL NS SGPV + + +L+ L+VL L+ N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 283 KFS-QNLPENIGSTGA---LYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYE 338
S N+ + S G ++ + N+ +G + S L+V NNF TG +P+
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV-SSNNFSTG-IPF- 215
Query: 339 IGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL 398
+G S D+ N+L+G + + ++ LN++ NQF GP+P + L L LSL
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 273
Query: 399 SYNYFTQVGPE 409
+ N FT P+
Sbjct: 274 AENKFTGEIPD 284
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFP 242
S+ D + L L I +SN IP+ S L L E+D+SNN L G P
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV----CQLPKLVNL 396
FLSNS + N ++G F C +S+ L+L+ N GPV + C K +N+
Sbjct: 80 FLSNSHI----NGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 130
Query: 397 SLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426
S + F KL +VLD+ N I
Sbjct: 131 SSNTLDFPGKVSGGLKLNSLEVLDLSANSI 160
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 27/282 (9%)
Query: 158 NKYKGFVCDVRPDIKKKA---VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFT 214
NK+ G + PD A + G+D +G F G ++ F L +SNNF+
Sbjct: 279 NKFTGEI----PDFLSGACDTLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFS 331
Query: 215 KSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIK-NLTFLDLRFNSFSGPVPAEIFYL 272
+P T K++ L LD+S N+ G P + N+ +L LDL N+FSGP+ +
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 273 ---DLDVLFLNNNKFSQNLP---ENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLF 326
L L+L NN F+ +P N +L+++F N +G IPSS+G L ++
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKL 449
Query: 327 LNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386
N G +P E+ ++ + N LTG IP +++ +++L+ N+ G +P+
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 387 VCQLPKLVNLSLSYNYFTQVGP----ECRKLIKRKVLDVRMN 424
+ +L L L LS N F+ P +CR LI LD+ N
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLI---WLDLNTN 548
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 48/238 (20%)
Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
L +L ++N T IPK +L+ L L +SNN G P E+ + ++L +LDL
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 257 RFNSFSGPVPAEIFYLDLDV----------LFLNN------------------------N 282
N F+G +PA +F + +++ N N
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 283 KFSQNLPENIGS---TGALYVTFANNE-----------FTGPIPSSIGRAKYLLEVLFLN 328
+ S P NI S G TF NN +G IP IG YL + +
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386
N +G +P E+G L + D+ +N+L G IP + L+ + ++L+ N GP+PE+
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 127/279 (45%), Gaps = 27/279 (9%)
Query: 148 ANTWMGPDVCNKYKGFV-CDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIF 206
AN+ G +V G+V D ++K A++G +G D +S + +L
Sbjct: 160 ANSISGANVV----GWVLSDGCGELKHLAISGNKISG------DVDVS----RCVNLEFL 205
Query: 207 HANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVP 266
+SNNF+ IP + L LD+S NKL G F + L L++ N F GP+P
Sbjct: 206 DVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 267 AEIFYLDLDVLFLNNNKFSQNLPENI-GSTGALY-VTFANNEFTGPIPSSIGRAKYLLEV 324
+ L L L NKF+ +P+ + G+ L + + N F G +P G L +
Sbjct: 265 P-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 325 LFLNNFFTGCLPYEIGF-LSNSTVFDVGNNRLTGPIPHSFGCLS-SMQYLNLAMNQFYGP 382
+N F+G LP + + V D+ N +G +P S LS S+ L+L+ N F GP
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 383 VPEIVCQLPK--LVNLSLSYNYFTQVGP----ECRKLIK 415
+ +CQ PK L L L N FT P C +L+
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 8/219 (3%)
Query: 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLE-DLAIFHANSNNFTKSI-PKMTSKLK-FL 227
+K + + +D + F+G L + L L L +SNNF+ I P + K L
Sbjct: 340 LKMRGLKVLDLSFNEFSG---ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQ 286
EL + NN G P + N L L L FN SG +P+ + L L L L N
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 287 NLPENIGSTGALYVTFAN-NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNS 345
+P+ + L + N+ TG IPS + L + NN TG +P IG L N
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP 384
+ + NN +G IP G S+ +L+L N F G +P
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 251 LTFLDLRFNSFSGPV------------------------PAEIF----YLDLDVLFLNNN 282
LT LDL NS SGPV P ++ L+VL L+ N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 283 KFS-QNLPENIGSTGA---LYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYE 338
S N+ + S G ++ + N+ +G + S L+V NNF TG +P+
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV-SSNNFSTG-IPF- 218
Query: 339 IGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL 398
+G S D+ N+L+G + + ++ LN++ NQF GP+P + L L LSL
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276
Query: 399 SYNYFTQVGPE 409
+ N FT P+
Sbjct: 277 AENKFTGEIPD 287
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFP 242
S+ D + L L I +SN IP+ S L L E+D+SNN L G P
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV----CQLPKLVNL 396
FLSNS + N ++G F C +S+ L+L+ N GPV + C K +N+
Sbjct: 83 FLSNSHI----NGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133
Query: 397 SLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426
S + F KL +VLD+ N I
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 35/287 (12%)
Query: 150 TWM-GPDVCNK-YKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFH 207
+W+ D CN+ + G +CD D + V +D +G P + + L L L +
Sbjct: 26 SWLPTTDCCNRTWLGVLCDT--DTQTYRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLY 82
Query: 208 ANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVP 266
NN IP +KL L+ L +++ + G P + IK L LD +N+ SG +P
Sbjct: 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 267 AEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALY--VTFANNEFTGPIPSS--------I 315
I L +L + + N+ S +P++ GS L+ +T + N TG IP + +
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 316 GRAKYLLE----VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
++ +LE VLF ++ T +I NS FD+G G ++
Sbjct: 203 DLSRNMLEGDASVLFGSDKNT----QKIHLAKNSLAFDLG----------KVGLSKNLNG 248
Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV 418
L+L N+ YG +P+ + QL L +L++S+N P+ L + V
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 225 KFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
K L LD+ NN+++G P + +K L L++ FN+ G +P DV NNK
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 88/210 (41%), Gaps = 31/210 (14%)
Query: 221 TSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN--SFSGPVPAEIF------YL 272
T KLK L L ++NK GG V++ +L FLDL N SF G F YL
Sbjct: 321 TLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 273 DLD---VLFLNNNKFSQNLPENIG---------STGALYVTFAN-------NEFTGPIPS 313
DL V+ +++N E++ S +++++ N + T +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 314 SIGRAKYLLEVLFL--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
I LEVL + N+F LP L N T D+ +L P +F LSS+Q
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
LN+A NQ I +L L + L N
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 221 TSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN--SFSGPVPAEIF------YL 272
T KLK L L ++NK GG V++ +L FLDL N SF G F YL
Sbjct: 345 TLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402
Query: 273 DLD---VLFLNNNKFSQNLPENIG---------STGALYVTFAN-------NEFTGPIPS 313
DL V+ +++N E++ S +++++ N + T +
Sbjct: 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462
Query: 314 SIGRAKYLLEVLFL--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
I LEVL + N+F LP L N T D+ +L P +F LSS+Q
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 372 LNLAMNQFYG 381
LN++ N F+
Sbjct: 523 LNMSHNNFFS 532
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 221 TSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN--SFSGPVPAEIF------YL 272
T KLK L L ++NK GG V++ +L FLDL N SF G F YL
Sbjct: 321 TLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 273 DLD---VLFLNNNKFSQNLPENIG---------STGALYVTFAN-------NEFTGPIPS 313
DL V+ +++N E++ S +++++ N + T +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 314 SIGRAKYLLEVLFL--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
I LEVL + N+F LP L N T D+ +L P +F LSS+Q
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 372 LNLAMNQFYG 381
LN++ N F+
Sbjct: 499 LNMSHNNFFS 508
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Query: 257 RFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIG 316
+ + +PA+ LDL +NK S + L + + N+ +P+ I
Sbjct: 27 KLTAIPSNIPADTKKLDL-----QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 317 RAKYLLEVLFLNNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLA 375
+ LE L++ + LP + L N + N+L P F L+ + YL+L
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 376 MNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR--KLIKRKVLDVRMNCILDLP 430
N+ + +L L L L N +V PE KL + K L + N + +P
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 273 DLDVLFLNNNKFSQN--------LPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEV 324
D V NNNK S + +P NI + + +N+ + +PS L +
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTK-KLDLQSNKLSS-LPSKAFHRLTKLRL 65
Query: 325 LFLNNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV 383
L+LN+ LP I L N V +N+L F L ++ L L NQ
Sbjct: 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125
Query: 384 PEIVCQLPKLVNLSLSYNYFTQV 406
P + L KL LSL YN +
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSL 148
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 322 LEVLFL--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQF 379
LEVL + N+F LP L N T D+ +L P +F LSS+Q LN++ N F
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 380 YG 381
+
Sbjct: 212 FS 213
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
SN TV ++ +N+L P +F S + L+ N PE+ LP L L+L +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 403 FTQVGPE----CRKLIKRKVLDVRMNCI 426
+Q+ + C L + LD+ N I
Sbjct: 85 LSQISDQTFVFCTNLTE---LDLMSNSI 109
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 39/246 (15%)
Query: 199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRF 258
+ LAI A N+ +K P++ L L L++ +N+L V NLT LDL
Sbjct: 47 RYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMS 106
Query: 259 NSF----SGPVPAE--IFYLDLDVLFLNNNKFSQNLP----------------------E 290
NS S P + + LDL L++ K + E
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELE 166
Query: 291 NIGSTGALYVTFANN---EFTGPIPSSIGRA-KYLLEVLFLNNFFTGCLPYEIGFLSNST 346
+G++ + ++N EF+ +IG+ LL LN T L +E LSN++
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWE---LSNTS 223
Query: 347 V--FDVGNNRLTGPIPHSFGCL--SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
+ + NN+L +F L +++ L+L+ N + LP L LSL YN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 403 FTQVGP 408
++ P
Sbjct: 284 IQRLSP 289
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Query: 406 V 406
+
Sbjct: 163 L 163
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 322 LEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
L L+LN LP EI LSN V D+ +NRLT +P G ++Y
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKY 297
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 200 LEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN 259
L +L IF+ ++N F K FL L ++ N L P E+ N+ NL LDL N
Sbjct: 231 LSNLQIFNISANIF---------KYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHN 280
Query: 260 SFSGPVPAEI 269
+ +PAE+
Sbjct: 281 RLTS-LPAEL 289
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
TV DV NRLT + L +Q L L N+ P ++ PKL LSL+ N T+
Sbjct: 104 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 163
Query: 406 V 406
+
Sbjct: 164 L 164
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
L L L+++ N+L P+ N+KNLT+L L FN+ S P L LF +NNK
Sbjct: 282 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFSNNK 338
Query: 284 FS 285
S
Sbjct: 339 VS 340
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 350 VGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG-PVPEIVCQLPKLVNLSLSYNYFTQVGP 408
+ NN++T GC S +QYL+L +N+ E+ L +L+L YN+ V
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 409 ECRKLIKRKVLDVRMN 424
+ K K LD+ N
Sbjct: 187 QV-VFAKLKTLDLSSN 201
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 350 VGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG-PVPEIVCQLPKLVNLSLSYNYFTQVGP 408
+ NN++T GC S +QYL+L +N+ E+ L +L+L YN+ V
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 409 ECRKLIKRKVLDVRMN 424
+ K K LD+ N
Sbjct: 187 QV-VFAKLKTLDLSSN 201
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
L L L+++ N+L P+ N+KNLT+L L FN+ S P L LF +NNK
Sbjct: 281 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFSNNK 337
Query: 284 FS 285
S
Sbjct: 338 VS 339
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
G + + V + N++T P F L+ + YLNLA+NQ + +L KL +L+L
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 400 YNYFTQV 406
N +
Sbjct: 97 INQLKSI 103
>pdb|3VST|A Chain A, The Complex Structure Of Xylc With Tris
pdb|3VST|B Chain B, The Complex Structure Of Xylc With Tris
pdb|3VST|C Chain C, The Complex Structure Of Xylc With Tris
pdb|3VST|D Chain D, The Complex Structure Of Xylc With Tris
pdb|3VSU|A Chain A, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|B Chain B, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|C Chain C, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|D Chain D, The Complex Structure Of Xylc With Xylobiose
pdb|3VSV|A Chain A, The Complex Structure Of Xylc With Xylose
pdb|3VSV|B Chain B, The Complex Structure Of Xylc With Xylose
pdb|3VSV|C Chain C, The Complex Structure Of Xylc With Xylose
pdb|3VSV|D Chain D, The Complex Structure Of Xylc With Xylose
Length = 638
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 319 KYLLEVLFLNNFFTGCLPYEIG--FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAM 376
+Y LE +F N G +IG + N+T++D G N + G + F + + N+A+
Sbjct: 287 QYQLEAVF-NAKRNGWSKEKIGSHIIRNNTIYDCGQNAIVGHLGGVFSEIYNNHIYNIAL 345
Query: 377 N-QFYGPVPEIV-CQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRS 434
+FYG EI +L +++ + +N ++ D + LD Q +
Sbjct: 346 KREFYG--HEIAGIKLHAAIDVQIHHN---------------RIHDCSLGLWLDWEAQGT 388
Query: 435 REECGKFFSESK 446
R F++ ++
Sbjct: 389 RVSKNLFYNNNR 400
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261
D I AN ++ ++F+ DV N + F GFP+ + +I T+ L+ +
Sbjct: 37 DAGISEANRAAVAANLRGGGGNIRFI---DV-NPEDFAGFPLNIRHISITTYARLKLGEY 92
Query: 262 SGPVPAEIFYLDLDVL 277
++ YLD+DVL
Sbjct: 93 IADCD-KVLYLDIDVL 107
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261
D I AN ++ ++F+ DV N + F GFP+ + +I T+ L+ +
Sbjct: 37 DAGISEANRAAVAANLRGGGGNIRFI---DV-NPEDFAGFPLNIRHISITTYARLKLGEY 92
Query: 262 SGPVPAEIFYLDLDVL 277
++ YLD+DVL
Sbjct: 93 IADCD-KVLYLDIDVL 107
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC--RKLIKRKVLD 420
F L+++ YLNLA NQ + +L L L LSYN Q PE KL + K L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLR 187
Query: 421 VRMNCILDLPN 431
+ N + +P+
Sbjct: 188 LYQNQLKSVPD 198
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 348 FDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQF--YGPVPEIVCQLPKLVNLSLSYN 401
D NN LT + + G L+ ++ L L MNQ + E+ Q+ L L +S N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
L L L+++ N+L P+ N+KNLT+L L FN+ S P L LF NNK
Sbjct: 285 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFANNK 341
Query: 284 FS 285
S
Sbjct: 342 VS 343
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 338 EIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS 397
+I FLS V + +NR+ H F ++YL+++ N+ C + L +L
Sbjct: 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS---CCPMASLRHLD 127
Query: 398 LSYNYFTQVGPECRK 412
LS+N F V P C++
Sbjct: 128 LSFNDF-DVLPVCKE 141
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 211 NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVV--NIKNLTFLDLRFNSFSGPVPAE 268
N FT S+ + S LK L L + N L F + ++ N+ +L LD+ NS
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-------- 414
Query: 269 IFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLN 328
LN++ + + + L + ++N TG + + ++VL L+
Sbjct: 415 ----------LNSHAYDRTCA---WAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLH 458
Query: 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386
N +P ++ L +V +N+L F L+S+QY+ L N + P I
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 317 RAKYLLEVLFLN----NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYL 372
RA L+VL L N G Y +G L + D+ +N L+ FG LSS++YL
Sbjct: 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYL 103
Query: 373 NLAMNQFYGPVPEIVCQLPKLVNL 396
NL N + + P L NL
Sbjct: 104 NLMGNPY--QTLGVTSLFPNLTNL 125
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 317 RAKYLLEVLFLN----NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYL 372
RA L+VL L N G Y +G L + D+ +N L+ FG LSS++YL
Sbjct: 73 RACANLQVLILKSSRINTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYL 129
Query: 373 NLAMNQFYGPVPEIVCQLPKLVNL 396
NL N + + P L NL
Sbjct: 130 NLMGNPY--QTLGVTSLFPNLTNL 151
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
L L L+++ N+L P+ N+KNLT+L L FN+ S P L LF NNK
Sbjct: 282 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFYNNK 338
Query: 284 FS 285
S
Sbjct: 339 VS 340
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
L L L+++ N+L P+ N+KNLT+L L FN+ S P L LF NNK
Sbjct: 282 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFYNNK 338
Query: 284 FS 285
S
Sbjct: 339 VS 340
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
L L L+++ N+L P+ N+KNLT+L L FN+ S P L LF NNK
Sbjct: 281 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFYNNK 337
Query: 284 FS 285
S
Sbjct: 338 VS 339
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
L L L+++ N+L P+ N+KNLT+L L FN+ S P L LF NNK
Sbjct: 286 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFYNNK 342
Query: 284 FS 285
S
Sbjct: 343 VS 344
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC--RKLIKRKVLDVRM 423
L +QYLNL+ N+ G + + P+L L +++ + P + L +VL++
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS- 432
Query: 424 NCILDLPNQR 433
+C+LD NQ
Sbjct: 433 HCLLDTSNQH 442
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL----FGGFPMEVVNIKN 250
D E L L + + N N P + S L L L +++N+L P N
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------AN 527
Query: 251 LTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGP 310
L LD+ N P P ++ L VL + +NKF + E ST ++ N GP
Sbjct: 528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKF---ICECELSTFINWLNHTNVTIAGP 582
Query: 311 IPSSI 315
P+ I
Sbjct: 583 -PADI 586
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 316 GRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLA 375
GR +L+++ N TG P S+ +G N++ F L ++ LNL
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 376 MNQFYGPVPEIVCQLPKLVNLSLSYNYF 403
NQ +P L L +L+L+ N F
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
+N TV ++ +N+L +F S + L++ N PE+ +LP L L+L +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 403 FTQVG 407
+Q+
Sbjct: 85 LSQLS 89
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
+N TV ++ +N+L +F S + L++ N PE+ +LP L L+L +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 403 FTQVG 407
+Q+
Sbjct: 90 LSQLS 94
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
+N TV ++ +N+L +F S + L++ N PE+ +LP L L+L +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 403 FTQVG 407
+Q+
Sbjct: 95 LSQLS 99
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 277 LFLNNNKFSQNLPENIGSTGAL----YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332
L LNNN+F+ + E G L + F+NN+ T + A + E+L +N
Sbjct: 37 LRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK 392
L + + +NR+T SF LSS++ L+L NQ P L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 393 LVNLSLSYNYF 403
L L+L N F
Sbjct: 155 LSTLNLLANPF 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,578,106
Number of Sequences: 62578
Number of extensions: 514170
Number of successful extensions: 1114
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 162
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)