Query 011101
Match_columns 493
No_of_seqs 631 out of 5000
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.8E-34 4E-39 327.1 21.2 288 128-427 29-321 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-29 3.5E-34 286.9 14.5 251 174-427 140-417 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.7E-27 1E-31 233.0 8.3 256 172-432 76-335 (873)
4 KOG4194 Membrane glycoprotein 99.9 3.8E-28 8.3E-33 240.7 0.1 288 174-464 173-482 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.1E-27 2.4E-32 238.8 -1.3 255 173-437 31-316 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.7E-27 1.2E-31 233.8 -3.0 251 173-431 77-333 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 6.9E-27 1.5E-31 222.8 -7.8 248 176-436 47-297 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.6E-25 3.5E-30 213.4 -5.4 246 172-431 66-314 (565)
9 PLN03210 Resistant to P. syrin 99.8 4.2E-19 9.1E-24 203.1 19.5 250 173-434 610-890 (1153)
10 PRK15370 E3 ubiquitin-protein 99.8 2.2E-19 4.9E-24 193.4 13.8 225 175-427 200-428 (754)
11 PRK15370 E3 ubiquitin-protein 99.8 1.9E-19 4.2E-24 193.9 12.9 230 174-433 178-407 (754)
12 KOG4237 Extracellular matrix p 99.8 4.3E-21 9.3E-26 183.2 -3.0 133 171-306 64-199 (498)
13 KOG0618 Serine/threonine phosp 99.8 3.6E-21 7.7E-26 200.8 -3.9 261 174-446 219-488 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 2.2E-18 4.7E-23 184.8 13.6 221 173-428 221-459 (788)
15 KOG0618 Serine/threonine phosp 99.8 5.3E-20 1.1E-24 192.1 0.6 244 172-426 239-488 (1081)
16 PRK15387 E3 ubiquitin-protein 99.8 6.2E-18 1.3E-22 181.3 15.1 221 176-433 203-441 (788)
17 PLN03210 Resistant to P. syrin 99.8 1.1E-17 2.4E-22 191.5 17.6 254 200-463 610-907 (1153)
18 KOG0617 Ras suppressor protein 99.7 4.3E-19 9.2E-24 151.5 -1.0 166 197-390 29-195 (264)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.3E-19 9.3E-24 176.0 -2.3 131 299-429 141-293 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 6.9E-19 1.5E-23 174.5 -3.1 253 174-426 23-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.4E-19 5.3E-24 153.0 -5.4 160 224-411 32-193 (264)
22 KOG4237 Extracellular matrix p 99.7 1.1E-18 2.4E-23 166.7 -3.5 252 171-426 88-358 (498)
23 PLN03150 hypothetical protein; 99.6 1E-14 2.2E-19 156.5 14.2 154 126-286 370-529 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 1.5E-15 3.3E-20 151.6 -1.2 175 224-406 74-249 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 6E-15 1.3E-19 147.3 0.0 194 200-402 74-271 (722)
26 COG4886 Leucine-rich repeat (L 99.4 5.8E-13 1.3E-17 136.2 7.7 194 178-383 97-293 (394)
27 COG4886 Leucine-rich repeat (L 99.4 1.3E-12 2.8E-17 133.7 8.1 195 205-408 97-294 (394)
28 KOG1259 Nischarin, modulator o 99.3 2.7E-13 5.8E-18 125.9 -1.1 134 295-434 283-419 (490)
29 KOG3207 Beta-tubulin folding c 99.3 6.7E-13 1.4E-17 129.2 1.0 207 199-405 119-340 (505)
30 KOG1909 Ran GTPase-activating 99.1 3.6E-12 7.9E-17 121.0 -3.0 235 173-427 29-311 (382)
31 KOG3207 Beta-tubulin folding c 99.0 4.2E-11 9E-16 116.8 1.1 208 171-381 118-340 (505)
32 PLN03150 hypothetical protein; 99.0 1.7E-10 3.6E-15 124.2 5.8 105 321-425 420-526 (623)
33 KOG0531 Protein phosphatase 1, 99.0 6.1E-11 1.3E-15 121.9 2.0 241 174-429 72-320 (414)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5E-15 101.9 4.8 111 316-431 16-130 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-10 2.6E-15 103.7 1.4 101 318-421 41-147 (175)
36 KOG0531 Protein phosphatase 1, 98.9 1.2E-10 2.5E-15 119.8 -0.6 218 198-427 69-290 (414)
37 KOG1259 Nischarin, modulator o 98.9 2.9E-10 6.2E-15 106.0 0.9 198 241-446 206-411 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.8 1.2E-08 2.6E-13 112.6 8.5 248 174-429 545-809 (889)
39 KOG1909 Ran GTPase-activating 98.8 4.2E-10 9E-15 107.2 -2.7 225 193-428 22-284 (382)
40 KOG1859 Leucine-rich repeat pr 98.8 2.2E-10 4.7E-15 118.0 -5.0 131 294-430 163-295 (1096)
41 PF13855 LRR_8: Leucine rich r 98.8 4.6E-09 1E-13 76.9 3.0 60 344-403 2-61 (61)
42 PF13855 LRR_8: Leucine rich r 98.7 4.6E-09 1E-13 76.9 2.5 61 201-261 1-61 (61)
43 KOG1924 RhoA GTPase effector D 98.6 5E-08 1.1E-12 100.7 6.2 12 154-166 640-651 (1102)
44 KOG4658 Apoptotic ATPase [Sign 98.6 3.2E-08 6.9E-13 109.3 3.4 101 226-327 546-650 (889)
45 KOG2120 SCF ubiquitin ligase, 98.5 3.2E-09 6.9E-14 99.1 -5.0 116 156-283 124-245 (419)
46 KOG1859 Leucine-rich repeat pr 98.5 2.8E-09 6E-14 110.0 -6.7 179 218-405 102-293 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.4 9.9E-09 2.1E-13 94.7 -5.0 239 174-431 30-320 (388)
48 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.4E-13 95.5 -6.9 178 202-402 186-374 (419)
49 KOG4579 Leucine-rich repeat (L 98.3 4.8E-08 1E-12 81.3 -3.0 111 319-432 27-141 (177)
50 KOG2982 Uncharacterized conser 98.2 1.1E-06 2.4E-11 82.3 4.4 204 199-422 69-287 (418)
51 KOG2982 Uncharacterized conser 98.2 2.2E-07 4.7E-12 87.0 -0.9 201 199-428 43-263 (418)
52 KOG4579 Leucine-rich repeat (L 98.1 5.6E-08 1.2E-12 80.9 -5.2 107 299-409 31-141 (177)
53 PF12799 LRR_4: Leucine Rich r 98.1 1.5E-06 3.3E-11 58.6 2.5 37 368-405 2-38 (44)
54 PF12799 LRR_4: Leucine Rich r 98.0 7E-06 1.5E-10 55.3 3.8 38 392-429 2-39 (44)
55 PF08263 LRRNT_2: Leucine rich 98.0 1E-05 2.2E-10 54.4 4.4 39 127-166 2-43 (43)
56 COG5238 RNA1 Ran GTPase-activa 97.9 1.5E-06 3.3E-11 80.5 -1.8 222 195-427 24-285 (388)
57 PRK15386 type III secretion pr 97.8 0.00011 2.3E-09 73.9 8.8 77 196-284 47-124 (426)
58 KOG3735 Tropomodulin and leiom 97.7 7.1E-06 1.5E-10 78.3 0.1 36 2-40 295-330 (353)
59 PRK15386 type III secretion pr 97.7 8.7E-05 1.9E-09 74.5 7.4 72 174-261 52-124 (426)
60 KOG1644 U2-associated snRNP A' 97.6 5.8E-05 1.3E-09 67.3 4.3 103 320-424 43-150 (233)
61 KOG3665 ZYG-1-like serine/thre 97.6 4.2E-05 9.1E-10 82.8 3.8 181 174-383 60-266 (699)
62 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.8E-09 65.2 4.8 88 342-431 41-130 (233)
63 KOG3665 ZYG-1-like serine/thre 97.3 7.2E-05 1.6E-09 81.0 1.3 109 318-428 147-264 (699)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 68.0 2.4 101 317-421 41-150 (260)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00032 6.9E-09 65.2 3.6 96 335-432 35-134 (260)
66 KOG2123 Uncharacterized conser 96.7 0.0002 4.3E-09 67.0 -2.3 100 317-420 17-123 (388)
67 KOG4341 F-box protein containi 95.9 0.00035 7.5E-09 68.9 -5.3 274 174-460 138-437 (483)
68 KOG4308 LRR-containing protein 95.8 8.2E-05 1.8E-09 77.2 -10.9 60 321-380 235-303 (478)
69 KOG2123 Uncharacterized conser 95.8 0.00051 1.1E-08 64.3 -4.5 84 341-428 17-102 (388)
70 KOG4308 LRR-containing protein 95.7 0.00017 3.6E-09 74.9 -8.8 181 225-405 87-304 (478)
71 PF13306 LRR_5: Leucine rich r 95.5 0.011 2.3E-07 49.8 2.9 111 314-430 7-118 (129)
72 PF13306 LRR_5: Leucine rich r 95.3 0.038 8.3E-07 46.4 5.6 59 197-257 8-66 (129)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.3E-07 33.2 0.6 11 370-380 3-13 (22)
74 PF13504 LRR_7: Leucine rich r 94.8 0.017 3.6E-07 30.2 1.2 16 415-430 2-17 (17)
75 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.7E-07 32.3 1.0 19 203-222 2-20 (22)
76 KOG0473 Leucine-rich repeat pr 94.2 0.001 2.2E-08 60.8 -7.0 89 337-427 36-124 (326)
77 KOG1947 Leucine rich repeat pr 93.9 0.016 3.5E-07 60.5 -0.1 35 200-234 187-223 (482)
78 PF13504 LRR_7: Leucine rich r 93.3 0.053 1.1E-06 28.2 1.3 15 392-406 2-16 (17)
79 KOG0473 Leucine-rich repeat pr 92.3 0.013 2.9E-07 53.7 -3.0 79 299-380 46-124 (326)
80 KOG1947 Leucine rich repeat pr 90.7 0.11 2.4E-06 54.2 1.4 108 318-425 187-306 (482)
81 KOG3671 Actin regulatory prote 90.1 1.2 2.6E-05 45.3 7.8 9 25-33 291-299 (569)
82 smart00369 LRR_TYP Leucine-ric 89.7 0.28 6.1E-06 28.5 2.0 20 413-432 1-20 (26)
83 smart00370 LRR Leucine-rich re 89.7 0.28 6.1E-06 28.5 2.0 20 413-432 1-20 (26)
84 KOG4242 Predicted myosin-I-bin 89.7 0.44 9.6E-06 48.3 4.5 223 202-425 215-479 (553)
85 smart00370 LRR Leucine-rich re 88.4 0.36 7.7E-06 28.0 1.8 14 249-262 2-15 (26)
86 smart00369 LRR_TYP Leucine-ric 88.4 0.36 7.7E-06 28.0 1.8 14 249-262 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 87.1 0.38 8.2E-06 28.0 1.3 18 414-431 2-19 (26)
88 KOG3864 Uncharacterized conser 86.5 0.16 3.6E-06 45.7 -0.6 83 174-259 101-186 (221)
89 KOG3864 Uncharacterized conser 83.6 0.062 1.3E-06 48.4 -4.6 33 345-377 103-135 (221)
90 PF12238 MSA-2c: Merozoite sur 83.0 8.7 0.00019 34.9 8.6 22 2-23 93-115 (205)
91 PF13516 LRR_6: Leucine Rich r 81.6 0.29 6.2E-06 27.8 -0.9 13 368-380 3-15 (24)
92 smart00365 LRR_SD22 Leucine-ri 79.6 1.3 2.8E-05 25.9 1.5 18 413-430 1-18 (26)
93 PRK15313 autotransport protein 74.6 12 0.00025 41.8 8.0 12 125-136 642-653 (955)
94 KOG4341 F-box protein containi 62.3 3.4 7.4E-05 41.6 0.9 229 172-402 162-437 (483)
95 smart00368 LRR_RI Leucine rich 61.8 6.3 0.00014 23.3 1.7 12 369-380 4-15 (28)
96 PF03276 Gag_spuma: Spumavirus 61.1 58 0.0013 34.0 9.3 6 149-154 284-289 (582)
97 KOG4242 Predicted myosin-I-bin 59.1 13 0.00029 38.1 4.3 196 224-423 164-389 (553)
98 KOG3763 mRNA export factor TAP 59.0 5 0.00011 41.9 1.4 63 341-405 216-284 (585)
99 PRK15313 autotransport protein 57.2 22 0.00048 39.7 6.0 7 133-139 654-660 (955)
100 PLN02983 biotin carboxyl carri 52.4 39 0.00084 32.1 6.0 15 15-29 102-116 (274)
101 PF07462 MSP1_C: Merozoite sur 51.8 47 0.001 34.7 6.9 16 18-33 207-222 (574)
102 KOG1925 Rac1 GTPase effector F 50.3 13 0.00028 38.1 2.7 8 175-182 347-354 (817)
103 KOG3763 mRNA export factor TAP 40.4 15 0.00031 38.6 1.4 63 318-382 217-285 (585)
104 KOG4590 Signal transduction pr 37.8 1.3E+02 0.0027 30.8 7.4 6 29-34 77-82 (409)
105 PF13908 Shisa: Wnt and FGF in 30.6 2.2E+02 0.0047 25.3 7.3 10 22-31 91-100 (179)
106 KOG3895 Synaptic vesicle prote 29.6 3.9E+02 0.0084 26.7 8.9 9 31-39 360-368 (488)
107 TIGR00864 PCC polycystin catio 28.3 39 0.00084 42.5 2.5 33 373-405 1-33 (2740)
108 smart00367 LRR_CC Leucine-rich 27.1 44 0.00096 19.0 1.4 11 225-235 2-12 (26)
109 PF02044 Bombesin: Bombesin-li 26.9 25 0.00053 17.1 0.2 7 2-8 8-14 (14)
110 KOG2391 Vacuolar sorting prote 26.4 4.7E+02 0.01 25.9 8.8 15 22-36 93-107 (365)
111 PHA03211 serine/threonine kina 24.7 91 0.002 32.6 4.2 39 67-105 24-62 (461)
112 PF08387 FBD: FBD; InterPro: 24.6 41 0.0009 23.0 1.1 22 3-27 24-45 (51)
113 PRK12270 kgd alpha-ketoglutara 22.2 4.4E+02 0.0095 30.4 8.7 88 53-140 48-135 (1228)
114 TIGR00864 PCC polycystin catio 22.0 58 0.0012 41.1 2.3 32 207-238 1-32 (2740)
115 PRK14948 DNA polymerase III su 20.6 5.8E+02 0.013 27.9 9.4 6 131-136 602-607 (620)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-34 Score=327.15 Aligned_cols=288 Identities=32% Similarity=0.515 Sum_probs=181.3
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEE
Q 011101 128 LAFKVIQRFKKRITYDPQGIANTWM-GPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIF 206 (493)
Q Consensus 128 ~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L 206 (493)
.++.++..|++.+. ++.+...+|. ..++| .|.||.|+.. .+++.|||++|++++ .++..+..+++|+.|
T Consensus 29 ~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c-~w~gv~c~~~-----~~v~~L~L~~~~i~~---~~~~~~~~l~~L~~L 98 (968)
T PLN00113 29 EELELLLSFKSSIN-DPLKYLSNWNSSADVC-LWQGITCNNS-----SRVVSIDLSGKNISG---KISSAIFRLPYIQTI 98 (968)
T ss_pred HHHHHHHHHHHhCC-CCcccCCCCCCCCCCC-cCcceecCCC-----CcEEEEEecCCCccc---cCChHHhCCCCCCEE
Confidence 56789999999994 7777889998 45666 9999999742 468888888888888 677788888888888
Q ss_pred EccCCcCCCccCcccC-CCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccC
Q 011101 207 HANSNNFTKSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKF 284 (493)
Q Consensus 207 ~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l 284 (493)
+|++|++++.+|..+. .+++|++|+|++|.+++.+|. ..+++|++|+|++|.+.+.+|..+... +|++|+|++|.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 8888888877776544 777777777777777655553 345556666666666655555555444 566666666655
Q ss_pred CCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccc
Q 011101 285 SQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF 363 (493)
Q Consensus 285 ~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 363 (493)
.+.+|..++++..+ +|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|..+
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 55555555555555 55555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC-ccccCCCCCCEEEeeCCcCC
Q 011101 364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG-PECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 364 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~L~~N~l~ 427 (493)
..+++|++|+|++|++++.+|..+..+.+|+.|+|++|++++.. ..+..+++|+.|++++|.++
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 55555555555555555555555555555555555555554432 23344444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.6e-29 Score=286.87 Aligned_cols=251 Identities=24% Similarity=0.409 Sum_probs=106.8
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.|+|++|.+.+ .+|..++.+++|++|++++|.+.+.+|..++++++|++|+|++|.+++.+|..+.++++|++
T Consensus 140 ~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNMLSG---EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCcccc---cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 344444444444444 34444444444444444444444444444444444444444444444444444444444444
Q ss_pred EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhc------------------------ccCcC
Q 011101 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTF------------------------ANNEF 307 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l------------------------~~n~l 307 (493)
|+|++|.+.+.+|..+... +|++|++++|.+.+.+|..+++++.+ +|++ ++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 4444444444444433333 44444444444444444444443333 3444 44444
Q ss_pred CCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhh
Q 011101 308 TGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV 387 (493)
Q Consensus 308 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 387 (493)
.+.+|..+.++++|+.|++++|.+.+.++..+..+++|+.|++++|.+++.+|..+..+.+|+.|+|++|++++.+|.++
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 43444444444444444444444443333334444444444444444444444444444444444444444433333333
Q ss_pred cCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCC
Q 011101 388 CQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 388 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~ 427 (493)
+.+.+|+.|++++|++.+. +..+..+++|+.|++++|.++
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 3333333333333333332 123344444555555555444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.7e-27 Score=233.00 Aligned_cols=256 Identities=22% Similarity=0.216 Sum_probs=220.6
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
.....+.||+++|.++. .-..+|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+..-..++..+..|
T Consensus 76 lp~~t~~LdlsnNkl~~---id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSH---IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred Cccceeeeecccccccc---CcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 34567889999999998 67788999999999999999998 677755666779999999999998888899999999
Q ss_pred cEEEcccccCCCCCCccccc--cccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcc
Q 011101 252 TFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLN 328 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 328 (493)
+.||||.|.|+ .++..-+. .++++|+|++|+|+...-..|..+..+ .|.|+.|+++..-+..|.++++|+.|+|..
T Consensus 152 rslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 99999999999 66655443 399999999999998777888888777 999999999977777888899999999999
Q ss_pred ccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC-
Q 011101 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG- 407 (493)
Q Consensus 329 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~- 407 (493)
|++.-.--..|.++.+|+.|.|..|+|...-...|..+.++++|+|+.|+++..-..++.++++|+.|+||+|.|..+.
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 9998443567888999999999999998666677888899999999999998777788889999999999999999874
Q ss_pred ccccCCCCCCEEEeeCCcCCCCCCC
Q 011101 408 PECRKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 408 ~~~~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
..+....+|++|+|++|+|+.++++
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred chhhhcccceeEeccccccccCChh
Confidence 4677788899999999999998764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.8e-28 Score=240.68 Aligned_cols=288 Identities=19% Similarity=0.164 Sum_probs=196.1
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.++++|+|++|+|+. .--..|..+.+|..|.|+.|+|+..-+..|.+|++|+.|+|..|+|...-.-.|.+|.+|+.
T Consensus 173 ~ni~~L~La~N~It~---l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNRITT---LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCceEEeeccccccc---cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 356667777776666 44556666666777777777776554455666777777777777664333455666777777
Q ss_pred EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (493)
|.|..|.+...-...|+.. ++++|+|..|++...--.++.+++.+ .|++++|.+...-.+++...++|++|+|++|++
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 7777777663323333333 77777777777776555666667766 777788877777777777777778888888877
Q ss_pred cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcc---hhhcCCCCCcEEeeeCCcCCCCCc
Q 011101 332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP---EIVCQLPKLVNLSLSYNYFTQVGP 408 (493)
Q Consensus 332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~~ 408 (493)
+..-+..|..+..|++|+|++|.++..--..|..+++|+.|||++|.|+..+. ..|.+|++|+.|+|.+|+|..++.
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 76666777777778888888887775555667777888888888887765442 346678888888888888888765
Q ss_pred -cccCCCCCCEEEeeCCcCCCC-CCCCCchhh--cccccCCCCCCC-------------CCCCcccCCCCCCC
Q 011101 409 -ECRKLIKRKVLDVRMNCILDL-PNQRSREEC--GKFFSESKKCPN-------------ERSLTLVPCARNRS 464 (493)
Q Consensus 409 -~~~~l~~L~~L~L~~N~l~~l-p~~~~~~~~--~~~~~~~~~c~~-------------~~~~~~~~C~~~~~ 464 (493)
+|..+.+|++|||.+|.|.++ ++.|...+. +.+.+....|.+ ++......|++...
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~ 482 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEP 482 (873)
T ss_pred hhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcc
Confidence 788888888888888888877 444544432 334444555653 35556667765543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-27 Score=238.76 Aligned_cols=255 Identities=24% Similarity=0.325 Sum_probs=177.3
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCC-CCCcccccCCCCC
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF-GGFPMEVVNIKNL 251 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L 251 (493)
+++++.|.|...++.. +|+.++.+.+|++|.+++|++.. +-..++.++.|+.+++..|++. .-+|..+..+..|
T Consensus 31 Mt~~~WLkLnrt~L~~----vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQ----VPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hhheeEEEechhhhhh----ChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 4567777777777765 78888888888888888888873 4466777888888888888774 3467777788888
Q ss_pred cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcc
Q 011101 252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLN 328 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 328 (493)
..||||+|++. ..|..+... ++-.|+||+|+|. .+|.. +-+++-+ +|||++|++. .+|..+..+..|+.|.|++
T Consensus 106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred eeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCC
Confidence 88888888887 777777665 7888888888887 44443 3455544 8888888877 6666777777788888877
Q ss_pred cccc-------------------------CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101 329 NFFT-------------------------GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV 383 (493)
Q Consensus 329 n~l~-------------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 383 (493)
|.+. ..+|.++..+.+|+.+|+|.|.+. .+|+.+..+.+|+.|+||+|+|+ .+
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL 260 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-EL 260 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-ee
Confidence 7543 134555566667777777777776 66777777777777777777766 33
Q ss_pred chhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC--CCCCCCCCchh
Q 011101 384 PEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI--LDLPNQRSREE 437 (493)
Q Consensus 384 p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l--~~lp~~~~~~~ 437 (493)
.-......+|++|+||.|+++.+|..+.++++|+.|.+.+|++ .+||+.++.+.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 3334445566666666666666666666666666666666644 35665554433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=5.7e-27 Score=233.78 Aligned_cols=251 Identities=25% Similarity=0.332 Sum_probs=174.8
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcc-cccCCCCC
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPM-EVVNIKNL 251 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L 251 (493)
+..++.++++.|++... .+|..+-+|..|+.|||++|++. ..|..+...+++-.|+||+|+|. .+|. -|.+|+.|
T Consensus 77 Lp~LRsv~~R~N~LKns--GiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDL 152 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNS--GIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDL 152 (1255)
T ss_pred chhhHHHhhhccccccC--CCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhH
Confidence 45677778888877643 47888888888888888888887 57777888888888888888885 4454 45688888
Q ss_pred cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCC-CCCchhhhhhhhhHHHHhcc
Q 011101 252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT-GPIPSSIGRAKYLLEVLFLN 328 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~-~~~p~~l~~l~~L~~L~L~~ 328 (493)
-+||||+|++. .+|..+..+ .|++|+|++|.+.-..-..+..++.+ .|.+++..-+ ..+|.++..+.+|..++++.
T Consensus 153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 88888888887 666666655 88888888887753333333444444 5566554332 35677777777777777777
Q ss_pred ccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCC--CC
Q 011101 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT--QV 406 (493)
Q Consensus 329 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~ 406 (493)
|.+. .+|+.+..+.+|+.|+||+|+|+ .+--......+|++|+||+|+++ .+|..++.+++|+.|.+.+|+++ |+
T Consensus 232 N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 232 NNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred cCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 7777 67777777777777777777777 44444555667777777777776 66777777777777777777643 45
Q ss_pred CccccCCCCCCEEEeeCCcCCCCCC
Q 011101 407 GPECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 407 ~~~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
|..++++.+|+++..++|.+.-+|+
T Consensus 309 PSGIGKL~~Levf~aanN~LElVPE 333 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLELVPE 333 (1255)
T ss_pred ccchhhhhhhHHHHhhccccccCch
Confidence 5556655555555555555555554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=6.9e-27 Score=222.75 Aligned_cols=248 Identities=26% Similarity=0.320 Sum_probs=127.1
Q ss_pred eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
++.+++++|.+.. +.+.+.++..|++|++++|+++ .+|.+++.+..++.|+.++|+++ .+|..++.+.+|+.|+
T Consensus 47 l~~lils~N~l~~----l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEV----LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhh----ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 3445555555544 4444555555555555555555 34445555555555555555553 4555555555555555
Q ss_pred cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
+++|.+. .+++.++.. .|+.|+..+|++. ..|.+++++..+ .+++.+|++....+..+. +++|++|+...|.+.
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 5555555 344444333 5555555555554 344444444444 555555555533333333 555555555555554
Q ss_pred CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhc-CCCCCcEEeeeCCcCCCCCccccC
Q 011101 334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC-QLPKLVNLSLSYNYFTQVGPECRK 412 (493)
Q Consensus 334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~ 412 (493)
.+|..++.+.+|+.|+|..|+|. .+| .|.++..|++|+++.|+|. .+|...+ .+.+|..|||++|++++.|..+..
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHH
Confidence 45555555555555555555555 444 4455555555555555554 3343333 455555555555555555555555
Q ss_pred CCCCCEEEeeCCcCCCCCCCCCch
Q 011101 413 LIKRKVLDVRMNCILDLPNQRSRE 436 (493)
Q Consensus 413 l~~L~~L~L~~N~l~~lp~~~~~~ 436 (493)
+++|..||+++|.|+++|...+++
T Consensus 274 LrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred hhhhhhhcccCCccccCCcccccc
Confidence 555555555555555555544444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.6e-25 Score=213.43 Aligned_cols=246 Identities=24% Similarity=0.321 Sum_probs=222.3
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
....++.|++.+|.+.. +|.+++.+..++.|+.++|+++ .+|..++.+.+|+.|++++|.+. .++++++.+-.|
T Consensus 66 nL~~l~vl~~~~n~l~~----lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQ----LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred cccceeEEEeccchhhh----CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 45568999999999997 8999999999999999999998 68899999999999999999995 788899999999
Q ss_pred cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101 252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNN 329 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 329 (493)
..|+..+|+++ .+|..++.. +|..|++.+|++....+..+. ++.+ ++|.-.|-++ .+|..++.+.+|+.|++..|
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 99999999999 666666655 999999999999855444444 8877 9999999887 89999999999999999999
Q ss_pred cccCCCcccccCCCCCcEEEecCCCCCCCCccccc-CCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101 330 FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG-CLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP 408 (493)
Q Consensus 330 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 408 (493)
++. .+| .|.++..|++|.++.|+|. .+|.... .+.+|..|||++|+++ ..|..++.+.+|++||+|+|.|++++.
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence 999 677 8999999999999999999 6776654 8999999999999998 789999999999999999999999999
Q ss_pred cccCCCCCCEEEeeCCcCCCCCC
Q 011101 409 ECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 409 ~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
+++++ .|+.|-+.+|.+.++-.
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHH
Confidence 99999 99999999999988643
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=4.2e-19 Score=203.15 Aligned_cols=250 Identities=18% Similarity=0.174 Sum_probs=180.1
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|+++++.+.. ++..+..+++|+.|+|+++.....+| .++.+++|++|+|++|.....+|..+.++++|+
T Consensus 610 ~~~L~~L~L~~s~l~~----L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK----LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCccccc----cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 4678888888888776 66777888899999998876555666 478888999999988876678888888899999
Q ss_pred EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhh-----------------
Q 011101 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSI----------------- 315 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l----------------- 315 (493)
+|++++|...+.+|..+...+|+.|++++|...+.+|....++ .+|++++|.+. .+|..+
T Consensus 685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL--~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 685 DLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNI--SWLDLDETAIE-EFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred EEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCc--CeeecCCCccc-cccccccccccccccccccchhh
Confidence 9999887655577776655588888888886655555432221 15556666544 333221
Q ss_pred -------------hhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCC
Q 011101 316 -------------GRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP 382 (493)
Q Consensus 316 -------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 382 (493)
....+|+.|++++|...+.+|..++++++|+.|+|++|...+.+|..+ .+++|++|+|++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 112467777777777776778888888888888888875444677655 677888888888755444
Q ss_pred cchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeC-CcCCCCCCCCC
Q 011101 383 VPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRM-NCILDLPNQRS 434 (493)
Q Consensus 383 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~~~ 434 (493)
+|.. ..+|+.|+|++|.|+.++..+..+++|+.|++++ |.++.+|....
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred cccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 4432 3578888888888888877888888888888887 67777775443
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.2e-19 Score=193.36 Aligned_cols=225 Identities=23% Similarity=0.322 Sum_probs=97.0
Q ss_pred ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101 175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254 (493)
Q Consensus 175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 254 (493)
+++.|+|++|+++. +|..+. .+|+.|++++|+++ .+|..+. .+|+.|+|++|.+. .+|..+. .+|++|
T Consensus 200 ~L~~L~Ls~N~Lts----LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L 267 (754)
T PRK15370 200 QITTLILDNNELKS----LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL 267 (754)
T ss_pred CCcEEEecCCCCCc----CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence 44555555555544 333322 24555555555554 2333221 24555555555553 3333332 345555
Q ss_pred EcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 255 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
+|++|+++ .+|..+. .+|+.|+|++|++++ +|..+.. ....|++++|.++. +|..+. .+|+.|++++|.+++
T Consensus 268 ~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp~-sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 268 DLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLPS-GITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS- 339 (754)
T ss_pred ECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccchh-hHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-
Confidence 55555554 3443332 245555555555442 2322210 11144455554442 332221 344455555555442
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccc----
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC---- 410 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---- 410 (493)
+|..+. ++|+.|+|++|+|+ .+|..+. ++|++|+|++|+|+ .+|..+. .+|+.|++++|+|++++..+
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~ 411 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFR 411 (754)
T ss_pred CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHh
Confidence 333321 34555555555554 3443332 34555555555554 2333332 23455555555555443322
Q ss_pred cCCCCCCEEEeeCCcCC
Q 011101 411 RKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 411 ~~l~~L~~L~L~~N~l~ 427 (493)
..++++..|+|.+|.|+
T Consensus 412 ~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hcCCCccEEEeeCCCcc
Confidence 22344455555555544
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.9e-19 Score=193.85 Aligned_cols=230 Identities=21% Similarity=0.351 Sum_probs=185.9
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+.+.|++++++++. +|..+. .+|+.|+|++|+|+ .+|..+. .+|++|++++|+|+ .+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~Lts----LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGLTT----IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCCcCc----CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccE
Confidence 457889999999987 666553 57999999999999 4666553 58999999999997 5666553 57999
Q ss_pred EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
|+|++|.+. .+|..+. .+|++|++++|++. .+|..+.. ...+|++++|+++ .+|..+. .+|+.|++++|.++.
T Consensus 246 L~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~~-sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 246 MELSINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLPE-ELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred EECcCCccC-cCChhHh-CCCCEEECcCCccC-ccccccCC-CCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc
Confidence 999999998 7777654 48999999999998 56766542 2338999999998 4565543 479999999999984
Q ss_pred CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCC
Q 011101 334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKL 413 (493)
Q Consensus 334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l 413 (493)
+|..+ ..+|+.|++++|.++ .+|..+. ++|+.|+|++|+|+ .+|..+ .++|+.|+|++|+|+.++..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~-- 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP-- 387 (754)
T ss_pred -CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--
Confidence 56544 368999999999999 5777664 68999999999998 567665 3689999999999999887654
Q ss_pred CCCCEEEeeCCcCCCCCCCC
Q 011101 414 IKRKVLDVRMNCILDLPNQR 433 (493)
Q Consensus 414 ~~L~~L~L~~N~l~~lp~~~ 433 (493)
.+|+.|++++|+|+.+|..+
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl 407 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESL 407 (754)
T ss_pred HHHHHHhhccCCcccCchhH
Confidence 37999999999999998754
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=4.3e-21 Score=183.15 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=95.4
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC-CCCCCCCcccccCCC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN-NKLFGGFPMEVVNIK 249 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~ 249 (493)
......+.++|..|+|+. .-+.+|+.+.+|+.|||++|+|+.+-|++|..+.+|..|-+-+ |+|+......|.+|.
T Consensus 64 ~LP~~tveirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cCCCcceEEEeccCCccc---CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 445667888888888887 5667788888888888888888888888888888877766555 888766667788888
Q ss_pred CCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCc
Q 011101 250 NLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE 306 (493)
Q Consensus 250 ~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~ 306 (493)
.|+.|.+.-|.+.....+.+..+ +|..|.+.+|.+...--..+..+... .+.+..|.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 88888888888875555555555 77778888887763333345554444 45554444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-21 Score=200.78 Aligned_cols=261 Identities=21% Similarity=0.283 Sum_probs=166.3
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.|+.++|.++. ... -..-.+|+++++++|++++ +|+.++.+.+|+.|++.+|+|+ .+|..+..+++|++
T Consensus 219 ~~l~~L~a~~n~l~~---~~~--~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTT---LDV--HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred cchheeeeccCccee---ecc--ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence 456666666666654 111 1123467777888777773 5577777777888888777774 66677777777777
Q ss_pred EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccc-ccccc-c-hhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENI-GSTGA-L-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNN 329 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~-~~~~~-l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 329 (493)
|++.+|.+. .+|...... +|++|+|..|++. .+|+.+ ..... + .++.+.|++.....-.=..+..|+.|++.+|
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 777777777 555555533 7777777777776 344432 22222 2 4555556555332222234566777777777
Q ss_pred cccCCCcccccCCCCCcEEEecCCCCCCCCcc-cccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101 330 FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH-SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP 408 (493)
Q Consensus 330 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 408 (493)
.++...-..+.+..+|+.|+|++|++. .+|+ .+.++..|++|+||+|+++ .+|..+..+..|++|...+|+|..+|
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP- 446 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP- 446 (1081)
T ss_pred cccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-
Confidence 777665556677777777777777777 4443 4556777777777777777 56677777777777777777777665
Q ss_pred cccCCCCCCEEEeeCCcCCCC--CCCC--CchhhcccccCCC
Q 011101 409 ECRKLIKRKVLDVRMNCILDL--PNQR--SREECGKFFSESK 446 (493)
Q Consensus 409 ~~~~l~~L~~L~L~~N~l~~l--p~~~--~~~~~~~~~~~~~ 446 (493)
.+..++.|+.+|++.|+|+.+ +... .++.-+++.+|.+
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 666777777777777776652 2221 3444555555554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.2e-18 Score=184.82 Aligned_cols=221 Identities=21% Similarity=0.262 Sum_probs=124.5
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|++.+|+++. +|. .+++|++|++++|+|+. +|.. ..+|++|++++|.++ .+|.. ..+|+
T Consensus 221 ~~~L~~L~L~~N~Lt~----LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~ 285 (788)
T PRK15387 221 PAHITTLVIPDNNLTS----LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLC 285 (788)
T ss_pred hcCCCEEEccCCcCCC----CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhc---hhhcC
Confidence 3467888888888876 443 24678888888888874 4432 356667777777664 23322 23455
Q ss_pred EEEcccccCCCCCCccccccccCEEEccCccCCCCcccccccc-----------------ccc-hhhcccCcCCCCCchh
Q 011101 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGST-----------------GAL-YVTFANNEFTGPIPSS 314 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-----------------~~l-~L~l~~n~l~~~~p~~ 314 (493)
.|+|++|+++ .+|.. ..+|+.|+|++|++++ +|.....+ ..+ +|++++|+++ .+|..
T Consensus 286 ~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l 360 (788)
T PRK15387 286 KLWIFGNQLT-SLPVL--PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL 360 (788)
T ss_pred EEECcCCccc-ccccc--ccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC
Confidence 5566666555 34331 1255566666665553 22211111 112 4555555555 23322
Q ss_pred hhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCc
Q 011101 315 IGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLV 394 (493)
Q Consensus 315 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 394 (493)
. .+|+.|++++|.+.+ +|.. ..+|+.|+|++|.|+ .+|.. ..+|+.|++++|+|++ +|.. ..+|+
T Consensus 361 p---~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~ 425 (788)
T PRK15387 361 P---SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLL 425 (788)
T ss_pred C---cccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhh
Confidence 1 234455555555552 3332 245666677777666 34432 2456677777777663 4432 23566
Q ss_pred EEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101 395 NLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 395 ~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
.|++++|+|+.+|..+..+.+|+.|+|++|.|++
T Consensus 426 ~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 426 SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 6777777777666666677777777777777765
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=5.3e-20 Score=192.14 Aligned_cols=244 Identities=25% Similarity=0.334 Sum_probs=210.1
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
...+++.+|++.|++++ +|+.+..+.+|+.+++.+|.++ .+|..+...++|+.|++.+|.+. .+|....+++.|
T Consensus 239 ~p~nl~~~dis~n~l~~----lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN----LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred ccccceeeecchhhhhc----chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence 45689999999999998 8899999999999999999996 68888999999999999999995 778888899999
Q ss_pred cEEEcccccCCCCCCcccccc---ccCEEEccCccCCCCccccc-cccccc-hhhcccCcCCCCCchhhhhhhhhHHHHh
Q 011101 252 TFLDLRFNSFSGPVPAEIFYL---DLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLF 326 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~---~L~~L~L~~n~l~~~~p~~~-~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L 326 (493)
++|+|..|.+. .+|+.+... +|+.|+.+.|++.. .|..= .....+ .|.+.+|.++...-..+-++.+|+.|+|
T Consensus 313 ~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 99999999998 788766544 68889999998873 33211 122334 8999999999887778889999999999
Q ss_pred ccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101 327 LNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 327 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
++|++...-...+.++..|++|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|++.|+|+.+
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 999999554567889999999999999999 89999999999999999999998 677 789999999999999999985
Q ss_pred C-ccccCCCCCCEEEeeCCcC
Q 011101 407 G-PECRKLIKRKVLDVRMNCI 426 (493)
Q Consensus 407 ~-~~~~~l~~L~~L~L~~N~l 426 (493)
. +.....++|++|||++|.-
T Consensus 468 ~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 468 TLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhCCCcccceeeccCCcc
Confidence 3 3333448999999999974
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=6.2e-18 Score=181.34 Aligned_cols=221 Identities=24% Similarity=0.264 Sum_probs=143.7
Q ss_pred eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
-..|+|++++++. +|..+. .+|+.|++.+|+++. +|. .+++|++|+|++|+|+ .+|.. ..+|+.|+
T Consensus 203 ~~~LdLs~~~Lts----LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 203 NAVLNVGESGLTT----LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred CcEEEcCCCCCCc----CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceee
Confidence 5578999999987 777765 489999999999995 554 3588999999999997 45543 47899999
Q ss_pred cccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 256 LRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
|++|.+. .+|... .+|+.|+|++|+++ .+|... ..+ +|++++|.+.+ +|... .+|+.|++++|.+++
T Consensus 269 Ls~N~L~-~Lp~lp--~~L~~L~Ls~N~Lt-~LP~~p---~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 269 IFSNPLT-HLPALP--SGLCKLWIFGNQLT-SLPVLP---PGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS- 336 (788)
T ss_pred ccCCchh-hhhhch--hhcCEEECcCCccc-cccccc---cccceeECCCCcccc-CCCCc---ccccccccccCcccc-
Confidence 9999998 566522 37999999999998 455432 334 88999999885 44322 345667777777763
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccC-----------------CCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC-----------------LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS 397 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 397 (493)
+|.. ..+|++|+|++|+|+ .+|..... ..+|+.|+|++|+|++ +|.. ..+|+.|+
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~Ld 408 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELM 408 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEE
Confidence 4431 246777777777777 34432211 1234455555555542 3321 23455555
Q ss_pred eeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCCC
Q 011101 398 LSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQR 433 (493)
Q Consensus 398 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~ 433 (493)
+++|+|++++.. ..+|+.|++++|+|+.+|..+
T Consensus 409 LS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 409 VSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred ccCCcCCCCCcc---hhhhhhhhhccCcccccChHH
Confidence 555555554322 224555666666666666543
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=1.1e-17 Score=191.50 Aligned_cols=254 Identities=17% Similarity=0.145 Sum_probs=136.0
Q ss_pred CCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEE
Q 011101 200 LEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLF 278 (493)
Q Consensus 200 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~ 278 (493)
+.+|+.|++.+|++. .++..+..+++|++|+|+++.....+|. +..+++|++|+|++|.....+|..+... +|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 345555555555554 2344455555555555555443334442 4455555555555555444555554444 555556
Q ss_pred ccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccc------------------
Q 011101 279 LNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEI------------------ 339 (493)
Q Consensus 279 L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l------------------ 339 (493)
+++|.....+|..+ +++.+ +|++++|...+.+|.. ..+|++|++++|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence 55554444444443 33333 5555555444444432 234555566666554 233221
Q ss_pred ------------cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC
Q 011101 340 ------------GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG 407 (493)
Q Consensus 340 ------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 407 (493)
....+|+.|+|++|...+.+|.++.++++|+.|+|++|...+.+|..+ .+++|+.|+|++|......
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 012356666666666555677777777777777777764444555544 5667777777775432221
Q ss_pred ccccCCCCCCEEEeeCCcCCCCCCCCCchhhcccc---------c---CCCCCCCCCCCcccCCCCCC
Q 011101 408 PECRKLIKRKVLDVRMNCILDLPNQRSREECGKFF---------S---ESKKCPNERSLTLVPCARNR 463 (493)
Q Consensus 408 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~---------~---~~~~c~~~~~~~~~~C~~~~ 463 (493)
+. ...+|+.|+|++|.|+.+|..+..+..+..+ . ....+..+..+.+.+|.+..
T Consensus 842 p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 842 PD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 22 2357889999999999888654433322221 1 11223344555667776554
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=4.3e-19 Score=151.53 Aligned_cols=166 Identities=23% Similarity=0.405 Sum_probs=119.2
Q ss_pred hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccC
Q 011101 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLD 275 (493)
Q Consensus 197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~ 275 (493)
+-.+.+++.|.|++|+++ .+|..+..+.+|+.|++++|+|+ .+|.++..+++|+.|+++-|++. .+|..++.. .|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 334555666666666666 45555666666666666666663 56666666666666666666665 555555444 555
Q ss_pred EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101 276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL 355 (493)
Q Consensus 276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 355 (493)
.|||.+|++.. ..+|..|..++.|+.|+|++|.+. .+|..++.+++|+.|.+.+|.+
T Consensus 106 vldltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 106 VLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 55665555542 256777888999999999999998 7888899999999999999988
Q ss_pred CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101 356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL 390 (493)
Q Consensus 356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 390 (493)
- .+|..++.+..|++|.+.+|+++ .+|..++++
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 8 78888888888999999999888 666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=4.3e-19 Score=176.01 Aligned_cols=131 Identities=24% Similarity=0.252 Sum_probs=73.3
Q ss_pred hhhcccCcCCCC----CchhhhhhhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccCC
Q 011101 299 YVTFANNEFTGP----IPSSIGRAKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCL 366 (493)
Q Consensus 299 ~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l 366 (493)
.|++++|.+++. +...+..+.+|++|++++|.+++. +...+..+.+|+.|+|++|.+++. +...+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 444444444421 222344445566667766666632 222334456777777777776532 23344556
Q ss_pred CCCCEEEcccCCCCCCcchhhcC-----CCCCcEEeeeCCcCCC-----CCccccCCCCCCEEEeeCCcCCCC
Q 011101 367 SSMQYLNLAMNQFYGPVPEIVCQ-----LPKLVNLSLSYNYFTQ-----VGPECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 367 ~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~L~~N~l~~l 429 (493)
++|++|++++|.+++.....+.. ...|+.|++++|.|+. +...+..+++|+.+++++|.++.-
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 67777777777776432222221 2577777777777763 122345556777777777777654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=6.9e-19 Score=174.55 Aligned_cols=253 Identities=20% Similarity=0.167 Sum_probs=181.3
Q ss_pred cceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCC------ccCcccCCCCCCCEEECcCCCCCCCCccccc
Q 011101 174 KAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTK------SIPKMTSKLKFLYELDVSNNKLFGGFPMEVV 246 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 246 (493)
.+++.|+++++.++... ..+...+...++|++|+++++.+.+ .++..+..+.+|++|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 45889999999885511 0245567778889999999988862 2345667788999999999998766666665
Q ss_pred CCCC---CcEEEcccccCCCCC----Cccccc--cccCEEEccCccCCCCc----cccccccccc-hhhcccCcCCCC--
Q 011101 247 NIKN---LTFLDLRFNSFSGPV----PAEIFY--LDLDVLFLNNNKFSQNL----PENIGSTGAL-YVTFANNEFTGP-- 310 (493)
Q Consensus 247 ~l~~---L~~L~Ls~n~l~~~~----p~~~~~--~~L~~L~L~~n~l~~~~----p~~~~~~~~l-~L~l~~n~l~~~-- 310 (493)
.+.+ |++|++++|.+++.. ...+.. .+|+.|++++|.+++.. ...+..+..+ +|++++|.+.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 5555 999999999887321 122222 38899999999988532 2234444455 889999988753
Q ss_pred --CchhhhhhhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCCCccccc-----CCCCCCEEEcccCCC
Q 011101 311 --IPSSIGRAKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGPIPHSFG-----CLSSMQYLNLAMNQF 379 (493)
Q Consensus 311 --~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l 379 (493)
+...+..+.+|++|++++|.+.+. +...+..+++|++|++++|.+++.....+. ....|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 233344556899999999998743 334566789999999999999863222222 247999999999999
Q ss_pred CC----CcchhhcCCCCCcEEeeeCCcCCCCCc-----cccCC-CCCCEEEeeCCcC
Q 011101 380 YG----PVPEIVCQLPKLVNLSLSYNYFTQVGP-----ECRKL-IKRKVLDVRMNCI 426 (493)
Q Consensus 380 ~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l-~~L~~L~L~~N~l 426 (493)
++ .+...+..+++|+.|++++|.++.... .+... ..|++|++.+|.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 73 233455667899999999999996422 34445 7899999998864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.4e-19 Score=152.99 Aligned_cols=160 Identities=26% Similarity=0.398 Sum_probs=84.1
Q ss_pred CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhc
Q 011101 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTF 302 (493)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l 302 (493)
+.+.+.|.||+|.++ .+|..+..+.+|+.|++++|+++ .+|..+..+ +|+.|+++-|++.
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~----------------- 92 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN----------------- 92 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-----------------
Confidence 344444455555553 33444444555555555555544 333333333 3444444333332
Q ss_pred ccCcCCCCCchhhhhhhhhHHHHhccccccC-CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 011101 303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG-CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381 (493)
Q Consensus 303 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 381 (493)
.+|..|+.++.|+.|||.+|++.. .+|..|..+..|+-|+|++|.+. .+|..++.+++|+.|.+.+|.+-
T Consensus 93 -------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll- 163 (264)
T KOG0617|consen 93 -------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL- 163 (264)
T ss_pred -------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-
Confidence 445555666666666666665543 34555555555666666666665 55555556666666666655554
Q ss_pred CcchhhcCCCCCcEEeeeCCcCCCCCcccc
Q 011101 382 PVPEIVCQLPKLVNLSLSYNYFTQVGPECR 411 (493)
Q Consensus 382 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 411 (493)
.+|..++.++.|+.|.+.+|+++-+++.+.
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 455555555556666666666555555443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-18 Score=166.73 Aligned_cols=252 Identities=18% Similarity=0.129 Sum_probs=183.6
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccC-CcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIK 249 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 249 (493)
....++++|||++|+|+. +-|++|..+..|..|-+.+ |+|+..-...|++|..|+.|.+.-|++.-...+.|..++
T Consensus 88 ~~l~~LRrLdLS~N~Is~---I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISF---IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred cchhhhceecccccchhh---cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 346789999999999999 8899999999999887777 999977668899999999999999999888888999999
Q ss_pred CCcEEEcccccCCCCCCc-ccccc-ccCEEEccCccCCC------------Cccccccccccc-hhhcccCcCCCCCchh
Q 011101 250 NLTFLDLRFNSFSGPVPA-EIFYL-DLDVLFLNNNKFSQ------------NLPENIGSTGAL-YVTFANNEFTGPIPSS 314 (493)
Q Consensus 250 ~L~~L~Ls~n~l~~~~p~-~~~~~-~L~~L~L~~n~l~~------------~~p~~~~~~~~l-~L~l~~n~l~~~~p~~ 314 (493)
+|..|.+..|.+. .++. .+... +++.+.+..|.+.. ..+..++..... -..+.++++...-...
T Consensus 165 ~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence 9999999999998 5655 44444 88888888887431 112222222222 2222333333222222
Q ss_pred h-hhhhhhHHHHhccccccCCCc-ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCC
Q 011101 315 I-GRAKYLLEVLFLNNFFTGCLP-YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK 392 (493)
Q Consensus 315 l-~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 392 (493)
+ ..++.+..-..+.+...+..| ..|..+++|++|+|++|+|+++...+|..+..|++|.|..|+|..+-...|.++..
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~ 323 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG 323 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence 2 112222222223333443444 46788888889999999988888888888888888888888887666667888888
Q ss_pred CcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcC
Q 011101 393 LVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCI 426 (493)
Q Consensus 393 L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l 426 (493)
|+.|+|.+|+|+.+-+ .|..+.+|..|.|-.|.+
T Consensus 324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 8888888888888744 677788888887777654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=1e-14 Score=156.51 Aligned_cols=154 Identities=23% Similarity=0.338 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCC----CCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCC
Q 011101 126 IQLAFKVIQRFKKRITYDPQGIANTWMGPDVCN----KYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLE 201 (493)
Q Consensus 126 ~~~~~~~L~~~k~~~~~d~~~~~~~W~~~~~C~----~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~ 201 (493)
...+..++..+|..+. ++. ..+|.+ +.|. .|.||.|..........++.|+|++|++.+ .+|..+..++
T Consensus 370 ~~~~~~aL~~~k~~~~-~~~--~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g---~ip~~i~~L~ 442 (623)
T PLN03150 370 LLEEVSALQTLKSSLG-LPL--RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG---FIPNDISKLR 442 (623)
T ss_pred CchHHHHHHHHHHhcC-Ccc--cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc---cCCHHHhCCC
Confidence 4557788999998874 322 147976 4553 699999964322222369999999999999 8999999999
Q ss_pred cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc--ccCEEEc
Q 011101 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL--DLDVLFL 279 (493)
Q Consensus 202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~L 279 (493)
+|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+.++++|++|+|++|.++|.+|..+... ++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764 6788999
Q ss_pred cCccCCC
Q 011101 280 NNNKFSQ 286 (493)
Q Consensus 280 ~~n~l~~ 286 (493)
.+|....
T Consensus 523 ~~N~~lc 529 (623)
T PLN03150 523 TDNAGLC 529 (623)
T ss_pred cCCcccc
Confidence 9887543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.50 E-value=1.5e-15 Score=151.56 Aligned_cols=175 Identities=25% Similarity=0.349 Sum_probs=108.4
Q ss_pred CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhc
Q 011101 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTF 302 (493)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l 302 (493)
+..-...||+.|++. .+|..+..+..|+.|.|.+|.|. .+|..+..+ .|.+|||+.|+++ .+|..++.+.+..|.+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence 444556777778774 67777777777777778777777 666666666 6777777777776 5666666666666666
Q ss_pred ccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCC
Q 011101 303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP 382 (493)
Q Consensus 303 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 382 (493)
++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.++.|.+. .+|..+..| .|..||+|.|+++ .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 666665 55556665556666666666655 45555555555555555555555 444444433 3555555555555 4
Q ss_pred cchhhcCCCCCcEEeeeCCcCCCC
Q 011101 383 VPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 383 ~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
+|-.|..|..|++|-|.+|.+..-
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCC
Confidence 555555555555555555555543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.47 E-value=6e-15 Score=147.35 Aligned_cols=194 Identities=28% Similarity=0.417 Sum_probs=146.6
Q ss_pred CCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEc
Q 011101 200 LEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFL 279 (493)
Q Consensus 200 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L 279 (493)
+..-...||+.|++. .+|..+..+-.|+.|.|..|.| ..+|..+.++..|.+|||+.|+++ .+|..++.+-|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence 344455566666666 5666666666677777777776 366777777777777777777777 7777777777888888
Q ss_pred cCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC
Q 011101 280 NNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358 (493)
Q Consensus 280 ~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 358 (493)
++|+++ .+|..++....+ .||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+. .=.|..||++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 888876 677777755555 7888888877 78888999999999999999998 5677776 445889999999999 8
Q ss_pred CcccccCCCCCCEEEcccCCCCCCcchhhcCCCC---CcEEeeeCCc
Q 011101 359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK---LVNLSLSYNY 402 (493)
Q Consensus 359 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~ 402 (493)
+|-.|..|+.|++|-|.+|.++ ..|..++..-. .++|+..-++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9999999999999999999998 55666654433 3566666664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.38 E-value=5.8e-13 Score=136.24 Aligned_cols=194 Identities=34% Similarity=0.467 Sum_probs=125.8
Q ss_pred EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCC-CCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101 178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLK-FLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256 (493)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 256 (493)
.+++..+.+.. ....+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .++..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~----~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRS----NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeecccccccc----CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 57888887754 2344666788999999999998 4556666674 8999999999985 56567888999999999
Q ss_pred ccccCCCCCCccc-cccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 257 RFNSFSGPVPAEI-FYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 257 s~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
++|++. .++... ....|+.|++++|++. .+|..+.....+ ++.+++|.+. ..+..+.++.++..+.+.+|++. .
T Consensus 171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~ 246 (394)
T COG4886 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-D 246 (394)
T ss_pred CCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-e
Confidence 999998 677666 4558999999999987 455444344433 5555555422 33344455555555555555554 2
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV 383 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 383 (493)
++..++.+.++++|++++|.++ .++. +..+.+|+.|++++|.+....
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 2344455555555555555555 2332 455555555555555555433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=1.3e-12 Score=133.71 Aligned_cols=195 Identities=29% Similarity=0.378 Sum_probs=118.1
Q ss_pred EEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCC-CCcEEEcccccCCCCCCcccccc-ccCEEEccCc
Q 011101 205 IFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIK-NLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNN 282 (493)
Q Consensus 205 ~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n 282 (493)
.+++..|.+...+ ..+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .++..+... +|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5677777664332 23445567777888877775 4555555554 7788888888777 555444444 7777777777
Q ss_pred cCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcc
Q 011101 283 KFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH 361 (493)
Q Consensus 283 ~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 361 (493)
++. .++...+....+ .|++++|.+. .+|..+.....|++|.+++|.+. ..+..+..+.++..|.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 776 344444344444 5666666666 45555445555666666666433 33445566666666666666665 3355
Q ss_pred cccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP 408 (493)
Q Consensus 362 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 408 (493)
.+..+.+|++|++++|.++. ++. +..+.+|+.|++++|.+...++
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 55666666666666666663 232 5556666666666666665544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=2.7e-13 Score=125.88 Aligned_cols=134 Identities=22% Similarity=0.162 Sum_probs=108.0
Q ss_pred cccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEE
Q 011101 295 TGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN 373 (493)
Q Consensus 295 ~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 373 (493)
+..+ .+|+++|.++ .+.+++.-++.++.|++++|.+... ..+..+.+|+.|||++|.++ .+..+-..+.+++.|+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 3445 7888888887 6777777788889999999998843 34788899999999999988 5666667788899999
Q ss_pred cccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC--CccccCCCCCCEEEeeCCcCCCCCCCCC
Q 011101 374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV--GPECRKLIKRKVLDVRMNCILDLPNQRS 434 (493)
Q Consensus 374 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~~~ 434 (493)
|++|.|.. -..+..+-+|..||+++|+|... ...+++++.|+.+.|.+|.|..+++.+.
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRT 419 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRT 419 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHH
Confidence 99998863 24467778899999999999875 3478899999999999999999987644
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.7e-13 Score=129.17 Aligned_cols=207 Identities=18% Similarity=0.186 Sum_probs=87.4
Q ss_pred CCCcCcEEEccCCcCCCccC-cccCCCCCCCEEECcCCCCCCC--CcccccCCCCCcEEEcccccCCCCCCccccc--cc
Q 011101 199 KLEDLAIFHANSNNFTKSIP-KMTSKLKFLYELDVSNNKLFGG--FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY--LD 273 (493)
Q Consensus 199 ~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~ 273 (493)
++.+|+...|.++.+..... .....|++++.|||+.|-|+.. +......|++|+.|+|+.|++..-....... ..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34444444444444431110 2233455555555555544321 1112234555555555555544211111111 15
Q ss_pred cCEEEccCccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCC-cccccCCCCCcEEEe
Q 011101 274 LDVLFLNNNKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL-PYEIGFLSNSTVFDV 350 (493)
Q Consensus 274 L~~L~L~~n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L 350 (493)
|+.|.|+.|.++..--.. +..+..+ .|++..|......-.....+..|++|+|++|++...- -...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 555666665554211000 0111111 3333333211122223334456666666666655211 133455666666666
Q ss_pred cCCCCCCC-Cccc-----ccCCCCCCEEEcccCCCCCC-cchhhcCCCCCcEEeeeCCcCCC
Q 011101 351 GNNRLTGP-IPHS-----FGCLSSMQYLNLAMNQFYGP-VPEIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 351 s~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
+.+.+... +|+. ...+.+|++|+++.|+|..- .-..+..+.+|+.|.+..|.|+.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 66665532 1111 12345566666666655311 11223344555555555555543
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=3.6e-12 Score=120.97 Aligned_cols=235 Identities=17% Similarity=0.134 Sum_probs=154.1
Q ss_pred ccceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCC----ccC-------cccCCCCCCCEEECcCCCCCCC
Q 011101 173 KKAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTK----SIP-------KMTSKLKFLYELDVSNNKLFGG 240 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~----~~p-------~~~~~l~~L~~L~Ls~n~l~~~ 240 (493)
...++.|+|++|.|..+. ..+-..+.+.++|+..+++.- ++| .+| ..+..+.+|++||||.|-|...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456888999998876521 123345677778888877653 222 222 2345566888888888887533
Q ss_pred Ccc----cccCCCCCcEEEcccccCCCCCCcccc--------------ccccCEEEccCccCCCCccccccccccchhhc
Q 011101 241 FPM----EVVNIKNLTFLDLRFNSFSGPVPAEIF--------------YLDLDVLFLNNNKFSQNLPENIGSTGALYVTF 302 (493)
Q Consensus 241 ~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~--------------~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l 302 (493)
.+. .+.++..|++|+|.+|.+...--..++ ...|+++...+|++....-.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~------------ 175 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT------------ 175 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH------------
Confidence 332 345678888888888887632111111 11566666666665421111
Q ss_pred ccCcCCCCCchhhhhhhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEc
Q 011101 303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNL 374 (493)
Q Consensus 303 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L 374 (493)
.+-..|...+.|+.+.+..|.+... +...|..+++|+.|||.+|.++.. +...+..+++|+.|++
T Consensus 176 -------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 176 -------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred -------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 1123345556778888888877532 235677899999999999998742 3445667789999999
Q ss_pred ccCCCCCCcchhh-----cCCCCCcEEeeeCCcCCCC-----CccccCCCCCCEEEeeCCcCC
Q 011101 375 AMNQFYGPVPEIV-----CQLPKLVNLSLSYNYFTQV-----GPECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 375 s~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~ 427 (493)
++|.+.......| ...++|+.|.+.+|.|+.- -..+...+.|..|+|++|.+.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9998875543333 2367999999999999862 113456889999999999984
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.2e-11 Score=116.83 Aligned_cols=208 Identities=16% Similarity=0.218 Sum_probs=145.3
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCc--cCcccCCCCCCCEEECcCCCCCCCCccc-ccC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKS--IPKMTSKLKFLYELDVSNNKLFGGFPME-VVN 247 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~ 247 (493)
.+..+|+.+.|.+..+...+ .-.....+++++.|||++|-|..- +......|++|+.|+|+.|.+....... -..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~--~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAG--IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccc--hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 45677888889888776511 114678899999999999988742 3344578999999999999885322211 135
Q ss_pred CCCCcEEEcccccCCCCCCcccc--ccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCc--hhhhhhhhhH
Q 011101 248 IKNLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP--SSIGRAKYLL 322 (493)
Q Consensus 248 l~~L~~L~Ls~n~l~~~~p~~~~--~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p--~~l~~l~~L~ 322 (493)
+..|+.|.|+.|.++..--..+. ..+|+.|+|..|............+..+ .|+|++|.+.. ++ ...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence 78899999999999832212221 2289999999996332222233334444 89999998873 33 3467889999
Q ss_pred HHHhccccccCCC-ccc-----ccCCCCCcEEEecCCCCCC-CCcccccCCCCCCEEEcccCCCCC
Q 011101 323 EVLFLNNFFTGCL-PYE-----IGFLSNSTVFDVGNNRLTG-PIPHSFGCLSSMQYLNLAMNQFYG 381 (493)
Q Consensus 323 ~L~L~~n~l~~~~-p~~-----l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~ 381 (493)
.|.++.+.+...- ++. ...+.+|++|++..|++.. ..-..+..+.+|+.|.+..|.++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 9999999987532 222 3567899999999999962 122345567888999999998874
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=1.7e-10 Score=124.19 Aligned_cols=105 Identities=28% Similarity=0.430 Sum_probs=84.8
Q ss_pred hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101 321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 400 (493)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcCCCCCc-cccC-CCCCCEEEeeCCc
Q 011101 401 NYFTQVGP-ECRK-LIKRKVLDVRMNC 425 (493)
Q Consensus 401 N~l~~~~~-~~~~-l~~L~~L~L~~N~ 425 (493)
|++++..+ .+.. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 88887543 4443 3456778888775
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.04 E-value=6.1e-11 Score=121.89 Aligned_cols=241 Identities=20% Similarity=0.184 Sum_probs=146.4
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
..+..++++.|.+.. +-..+..+++|+.|++..|.|.... ..+..+.+|++|+|++|.|+... .+..+..|+.
T Consensus 72 ~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHHhhccchhhhhh----hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhh
Confidence 345555566666554 3344666777777777777777432 22566777777777777775432 3455666777
Q ss_pred EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (493)
|++++|.|+ .+...-....|+.+++++|.+...-......+..+ .+++.+|.+... ..+..+..+..+++..|.+.
T Consensus 145 L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 145 LNLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred heeccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 777777776 44433334477777777777764333102333334 677777766522 33445556666677777776
Q ss_pred CCCcccccCCCC--CcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC---C
Q 011101 333 GCLPYEIGFLSN--STVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV---G 407 (493)
Q Consensus 333 ~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~ 407 (493)
..- .+..+.. |+.+++++|.+. ..+..+..+..+..|++.+|++... ..+.....+..+.+..|.+... .
T Consensus 222 ~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 222 KLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred ecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence 322 1222333 778888888877 4445566777788888888877643 2234455666677777776632 1
Q ss_pred c--cccCCCCCCEEEeeCCcCCCC
Q 011101 408 P--ECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 408 ~--~~~~l~~L~~L~L~~N~l~~l 429 (493)
. .......++.+.+..|.+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccccccccCccccc
Confidence 1 145667777778887777653
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.3e-10 Score=101.89 Aligned_cols=111 Identities=25% Similarity=0.334 Sum_probs=45.0
Q ss_pred hhhhhhHHHHhccccccCCCccccc-CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhh-cCCCCC
Q 011101 316 GRAKYLLEVLFLNNFFTGCLPYEIG-FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV-CQLPKL 393 (493)
Q Consensus 316 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L 393 (493)
.+..++++|+|++|.++. + +.++ .+.+|+.|||++|.|+ .+. .+..+.+|++|++++|+|+. +...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 445578999999999984 3 3455 5789999999999999 443 57788999999999999985 43334 458999
Q ss_pred cEEeeeCCcCCCCC--ccccCCCCCCEEEeeCCcCCCCCC
Q 011101 394 VNLSLSYNYFTQVG--PECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 394 ~~L~Ls~N~l~~~~--~~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
+.|+|++|+|..+. ..+..+++|++|++.+|.++..+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 99999999998863 357889999999999999986543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=1.2e-10 Score=103.69 Aligned_cols=101 Identities=31% Similarity=0.247 Sum_probs=40.6
Q ss_pred hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccc-cCCCCCCEEEcccCCCCCCc-chhhcCCCCCcE
Q 011101 318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF-GCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVN 395 (493)
Q Consensus 318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~ 395 (493)
+.+|+.|++++|.++. + ..+..+..|++|++++|.|+ .+.+.+ ..+++|++|+|++|+|...- -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 3455555666665553 2 23556677777777777777 343333 35677777777777776421 234566777888
Q ss_pred EeeeCCcCCCCCc----cccCCCCCCEEEe
Q 011101 396 LSLSYNYFTQVGP----ECRKLIKRKVLDV 421 (493)
Q Consensus 396 L~Ls~N~l~~~~~----~~~~l~~L~~L~L 421 (493)
|+|.+|.++.... .+..+++|+.||-
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888887776432 3566777777764
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=1.2e-10 Score=119.81 Aligned_cols=218 Identities=23% Similarity=0.214 Sum_probs=158.5
Q ss_pred hCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEE
Q 011101 198 EKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVL 277 (493)
Q Consensus 198 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L 277 (493)
..+..++.+++..|.|.. +-..+..+++|+.|++.+|.|... ...+..+.+|++|+|++|.|+ .+...-....|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccchhhccchhhh
Confidence 456778888899999985 335578899999999999999643 333778999999999999998 44443334479999
Q ss_pred EccCccCCCCccccccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101 278 FLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL 355 (493)
Q Consensus 278 ~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 355 (493)
++++|.+... ..+..+..+ .+++++|.+...-. . ...+.+|+.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 9999999732 233335555 88999998875433 1 57788899999999998742 3345556666778888988
Q ss_pred CCCCcccccCCC--CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCC
Q 011101 356 TGPIPHSFGCLS--SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 356 ~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~ 427 (493)
+. +- .+..+. +|+.+++++|.+. .++..+..+..+..|++.+|++..+. .+.....+..+....|.+.
T Consensus 221 ~~-~~-~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SK-LE-GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ee-cc-CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence 83 22 222233 3899999999987 33355667788999999999988762 3445566667777777665
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.9e-10 Score=105.98 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=141.5
Q ss_pred CcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhc---ccCcCCCCCchhhhh
Q 011101 241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTF---ANNEFTGPIPSSIGR 317 (493)
Q Consensus 241 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l---~~n~l~~~~p~~l~~ 317 (493)
++-.+.-+++|+.+.++++.-.....-......|+++.+.+..+.. .+. +--.+.+ .|. ......|..-..+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~-~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VPS-LLPETIL-ADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-ccc-ccchhhh-cCccCCCCCccCCceEEecch
Confidence 3444556788888889888765333333344488898888776542 111 1111111 111 112234444555666
Q ss_pred hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101 318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS 397 (493)
Q Consensus 318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 397 (493)
++.|++|||++|.++ .+..+..-++.++.|++++|.|. .+- .+..+.+|+.||||+|.++ .+-.+-..+-++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 788999999999999 67778888899999999999998 443 4888999999999999998 5566667788999999
Q ss_pred eeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC--CCCchhhcc---cccCCC
Q 011101 398 LSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN--QRSREECGK---FFSESK 446 (493)
Q Consensus 398 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~~~~~~~~~---~~~~~~ 446 (493)
|+.|.|..+ ..+.++-+|..||+++|+|..+.. .++.+.|+. +.+||.
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 999999876 467788899999999999998753 456666643 444544
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=1.2e-08 Score=112.60 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=144.9
Q ss_pred cceEEEEcCCCC--cCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 174 KAVAGVDFNGYR--FNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 174 ~~l~~L~L~~n~--l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
..+++|-+.+|. +.. ....+|..++.|++|||++|.-.+.+|..+++|-+|++|++++..+. .+|..+.+|+.|
T Consensus 545 ~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 357777777775 444 34556888888999999887776788888888888999999888885 788888888889
Q ss_pred cEEEcccccCCCCCCcccccc-ccCEEEccCccCC--CCccccccccccc-hhhcccCcCCCCCchhhhhhhhhH----H
Q 011101 252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS--QNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLL----E 323 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~--~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~----~ 323 (493)
.+|++.++.....++.....+ +|++|.+...... ...-..+.++..+ .+....... .+-..+..+.+|. .
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 999888887665555555433 8888888765522 1111222222222 222211111 1112223333333 3
Q ss_pred HHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC------CCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101 324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC------LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS 397 (493)
Q Consensus 324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 397 (493)
+.+.++... .....+..+.+|+.|.+.++.+......+... ++++..+.+.++..- ..+.+..-.++|+.|.
T Consensus 699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLS 776 (889)
T ss_pred hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEE
Confidence 333333333 45567788899999999998886332222111 112222222222211 1223333457888888
Q ss_pred eeCCcCCC-CCccccCCCCCCEEEeeCCcCCCC
Q 011101 398 LSYNYFTQ-VGPECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 398 Ls~N~l~~-~~~~~~~l~~L~~L~L~~N~l~~l 429 (493)
+..+.... +++....+..++.+-+..+.+..+
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEecccccccc
Confidence 88766444 444445555555555555555554
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=4.2e-10 Score=107.15 Aligned_cols=225 Identities=20% Similarity=0.231 Sum_probs=153.8
Q ss_pred cchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCC----CCcc-------cccCCCCCcEEEcc
Q 011101 193 LSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFG----GFPM-------EVVNIKNLTFLDLR 257 (493)
Q Consensus 193 ~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls 257 (493)
+-+.+..+..++.++|++|.|... +...+.+.++|+..++++- ++| .+|. .+...++|++|+||
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 334567788999999999999642 4455677789999998863 233 2333 34556789999999
Q ss_pred cccCCCCCCcccccc-----ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101 258 FNSFSGPVPAEIFYL-----DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332 (493)
Q Consensus 258 ~n~l~~~~p~~~~~~-----~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (493)
.|.|....+..+... +|++|+|.+|.+.-.--..++. -...+..++ -..+-..|+.+...+|++.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~~~k-------k~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELAVNK-------KAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHHHHh-------ccCCCcceEEEEeeccccc
Confidence 999876555544322 7888888888875221111111 011111221 1223346777888888876
Q ss_pred CCC----cccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCC----cchhhcCCCCCcEEeeeC
Q 011101 333 GCL----PYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGP----VPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 333 ~~~----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~ 400 (493)
..- ...|...+.|+.+.+..|.|... +...|..+++|+.|||.+|-|+.. +...+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 432 23456678999999999998732 335677899999999999998743 234566788999999999
Q ss_pred CcCCCCCc-----cc-cCCCCCCEEEeeCCcCCC
Q 011101 401 NYFTQVGP-----EC-RKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 401 N~l~~~~~-----~~-~~l~~L~~L~L~~N~l~~ 428 (493)
|.+..-.. .+ ...++|++|.+.+|.|+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 99987432 22 447899999999999875
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.78 E-value=2.2e-10 Score=118.02 Aligned_cols=131 Identities=22% Similarity=0.180 Sum_probs=98.7
Q ss_pred ccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEE
Q 011101 294 STGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN 373 (493)
Q Consensus 294 ~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 373 (493)
..++...+++.|.+. .+..++.-++.|+.|+|++|++...- .+..+..|++|||+.|.++ .+|..-..-.+|+.|+
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 334446677777776 56677888889999999999998543 7888999999999999998 4554221123499999
Q ss_pred cccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc--cccCCCCCCEEEeeCCcCCCCC
Q 011101 374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 374 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~lp 430 (493)
|++|.++. + ..+.++.+|+.||+++|-|.+.-. -+..+..|+.|+|.+|.+..=|
T Consensus 239 lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 239 LRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999873 2 457788899999999999887422 3566778899999999876654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=4.6e-09 Score=76.88 Aligned_cols=60 Identities=35% Similarity=0.505 Sum_probs=34.5
Q ss_pred CCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcC
Q 011101 344 NSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYF 403 (493)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 403 (493)
+|++|++++|+++...+..|..+++|++|+|++|+++...+..|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666643334555566666666666666544445555666666666666553
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=4.6e-09 Score=76.87 Aligned_cols=61 Identities=34% Similarity=0.413 Sum_probs=44.1
Q ss_pred CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccC
Q 011101 201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261 (493)
Q Consensus 201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 261 (493)
++|++|++++|+++..-+..|.++++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777755556777777777777777777766666777777777777777764
No 43
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=5e-08 Score=100.68 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=7.8
Q ss_pred CCCCCCCCceeec
Q 011101 154 PDVCNKYKGFVCD 166 (493)
Q Consensus 154 ~~~C~~w~gv~c~ 166 (493)
++.| -|.+|.-+
T Consensus 640 s~~c-FWvkv~Ed 651 (1102)
T KOG1924|consen 640 SENC-FWVKVNED 651 (1102)
T ss_pred Cccc-eeeecchh
Confidence 4567 89776544
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=3.2e-08 Score=109.26 Aligned_cols=101 Identities=25% Similarity=0.216 Sum_probs=45.8
Q ss_pred CCCEEECcCCC--CCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhh
Q 011101 226 FLYELDVSNNK--LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVT 301 (493)
Q Consensus 226 ~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~ 301 (493)
.|++|-+..|. +.......|..++.|+.|||++|.-.+.+|..++.+ +|++|+|+++.+. .+|..+++++.+ +|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 44444444443 222222334444555555555444434445444433 5555555555544 444455544444 455
Q ss_pred cccCcCCCCCchhhhhhhhhHHHHhc
Q 011101 302 FANNEFTGPIPSSIGRAKYLLEVLFL 327 (493)
Q Consensus 302 l~~n~l~~~~p~~l~~l~~L~~L~L~ 327 (493)
+..+.....++..+..+.+|++|.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cccccccccccchhhhcccccEEEee
Confidence 44444333333444444444444443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.2e-09 Score=99.05 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCC--cCcEEEccCCcCCCc-cCcccCCC-CCCCEEE
Q 011101 156 VCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLE--DLAIFHANSNNFTKS-IPKMTSKL-KFLYELD 231 (493)
Q Consensus 156 ~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~--~L~~L~L~~n~i~~~-~p~~~~~l-~~L~~L~ 231 (493)
.|-+|.+..-+. ..-+.+|+.+-.|.. ..++.+. .+..+.+...-+... +.+.+.-+ +.|++||
T Consensus 124 VC~Rfyr~~~de------~lW~~lDl~~r~i~p------~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lD 191 (419)
T KOG2120|consen 124 VCKRFYRLASDE------SLWQTLDLTGRNIHP------DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLD 191 (419)
T ss_pred HHHHHhhccccc------cceeeeccCCCccCh------hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhh
Confidence 454566554442 356778888777654 3333332 333444443222221 11222211 3478888
Q ss_pred CcCCCCCC-CCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCcc
Q 011101 232 VSNNKLFG-GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNK 283 (493)
Q Consensus 232 Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~ 283 (493)
|++..|+. .+..-+..+.+|+.|.|.++++...+-..++.. +|+.|+|+.+.
T Consensus 192 LS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 192 LSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred cchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 88877752 233345667888888888888876666655544 78888887664
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=2.8e-09 Score=110.03 Aligned_cols=179 Identities=20% Similarity=0.205 Sum_probs=112.3
Q ss_pred CcccCCCCCCCEEECcCCCCCCCCcccccCC-CCCcEEEcccccCC----------CCCCccccccccCEEEccCccCCC
Q 011101 218 PKMTSKLKFLYELDVSNNKLFGGFPMEVVNI-KNLTFLDLRFNSFS----------GPVPAEIFYLDLDVLFLNNNKFSQ 286 (493)
Q Consensus 218 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~----------~~~p~~~~~~~L~~L~L~~n~l~~ 286 (493)
|-.+..+..|++|.|.++.|.. ...+..+ .+|++| +.+|.+. |.+...+....|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 4556667777777777777642 1111111 233333 2222221 12222222226777788888876
Q ss_pred Cccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC
Q 011101 287 NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC 365 (493)
Q Consensus 287 ~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 365 (493)
.+..++.-+..+ .|+|++|++... +.+..++.|++|||++|.+...-.-....++ |..|.|++|.++ .+ ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hh-hhHHh
Confidence 455555555555 788888888754 3778888899999999988843222333444 889999999887 23 35678
Q ss_pred CCCCCEEEcccCCCCCCcc-hhhcCCCCCcEEeeeCCcCCC
Q 011101 366 LSSMQYLNLAMNQFYGPVP-EIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 366 l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
+.+|+.||+++|-|.+.-- .-++.+..|+.|.|.+|.+--
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8889999999997765321 123456778888898888754
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=9.9e-09 Score=94.66 Aligned_cols=239 Identities=18% Similarity=0.148 Sum_probs=143.2
Q ss_pred cceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCC---c-------cCcccCCCCCCCEEECcCCCCCCCCc
Q 011101 174 KAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTK---S-------IPKMTSKLKFLYELDVSNNKLFGGFP 242 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~---~-------~p~~~~~l~~L~~L~Ls~n~l~~~~p 242 (493)
..++.+|||||.|..+. ..+-..+.+-.+|+..+++.-.... . +...+-+|++|+..+||.|.|....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 46788888888877521 0123345566677777776532211 1 22345677888888888887765444
Q ss_pred c----cccCCCCCcEEEcccccCCCCCCcccc--------------ccccCEEEccCccCCCCccccccccccchhhccc
Q 011101 243 M----EVVNIKNLTFLDLRFNSFSGPVPAEIF--------------YLDLDVLFLNNNKFSQNLPENIGSTGALYVTFAN 304 (493)
Q Consensus 243 ~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~--------------~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~ 304 (493)
. .+.+-+.|++|.|++|.+...--..++ ...|++.....|++.. .+...
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~------------ 176 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKEL------------ 176 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHH------------
Confidence 3 345567788888888876522111111 1156666666666541 11000
Q ss_pred CcCCCCCchhhhhhhhhHHHHhccccccCCC-----cccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcc
Q 011101 305 NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL-----PYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLA 375 (493)
Q Consensus 305 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls 375 (493)
.-..+..-.+|+++.+..|.|...- -..+..+++|+.|||.+|.++-. +...+..++.|+.|.+.
T Consensus 177 ------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 177 ------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred ------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 0011222235666666667665321 12235678999999999998732 23345566779999999
Q ss_pred cCCCCCCcchhh------cCCCCCcEEeeeCCcCCCC-Cc-----cc--cCCCCCCEEEeeCCcCCCCCC
Q 011101 376 MNQFYGPVPEIV------CQLPKLVNLSLSYNYFTQV-GP-----EC--RKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 376 ~N~l~~~~p~~l------~~l~~L~~L~Ls~N~l~~~-~~-----~~--~~l~~L~~L~L~~N~l~~lp~ 431 (493)
+|-++.....++ ...++|..|.+.+|.+.+- +. .+ ..++-|..|.+.+|+|+...+
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d 320 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELAD 320 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHH
Confidence 998875443332 1357889999999988762 11 12 457777888888999887653
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.1e-08 Score=95.52 Aligned_cols=178 Identities=19% Similarity=0.108 Sum_probs=102.4
Q ss_pred cCcEEEccCCcCCCc-cCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccccc-CCCCCCccccc--cccCEE
Q 011101 202 DLAIFHANSNNFTKS-IPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNS-FSGPVPAEIFY--LDLDVL 277 (493)
Q Consensus 202 ~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~--~~L~~L 277 (493)
.|++|||+...|+.. +-.-++.|.+|+.|.|.++++.+.+...+..-.+|+.|+|+.+. |+...-..+.. ..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 577777777777632 22335667777777777777776666677777777777777654 33111111111 167777
Q ss_pred EccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc---CCCcccccCCCCCcEEEecCCC
Q 011101 278 FLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT---GCLPYEIGFLSNSTVFDVGNNR 354 (493)
Q Consensus 278 ~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~N~ 354 (493)
+|+.|.+....-..+- ..++ .+|..|+|+++.-. ..+..-...+++|..|||++|.
T Consensus 266 NlsWc~l~~~~Vtv~V-------------------~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAV-------------------AHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHH-------------------hhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 7777766532211000 0000 23444444443211 1111122467788888888764
Q ss_pred -CCCCCcccccCCCCCCEEEcccCCCCCCcchh---hcCCCCCcEEeeeCCc
Q 011101 355 -LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI---VCQLPKLVNLSLSYNY 402 (493)
Q Consensus 355 -l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~ 402 (493)
++......|..++.|++|.++.|.. ++|.. +...++|.+||+.++-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 4544445566778888888888864 45554 3556788888887763
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=4.8e-08 Score=81.26 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=89.8
Q ss_pred hhhHHHHhccccccCCCc---ccccCCCCCcEEEecCCCCCCCCccccc-CCCCCCEEEcccCCCCCCcchhhcCCCCCc
Q 011101 319 KYLLEVLFLNNFFTGCLP---YEIGFLSNSTVFDVGNNRLTGPIPHSFG-CLSSMQYLNLAMNQFYGPVPEIVCQLPKLV 394 (493)
Q Consensus 319 ~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 394 (493)
..+..++|++|.+. .++ ..+.....|+..+|++|.+. .+|..|. ..+.++.|+|++|+|+ .+|..+..++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34566677777665 233 33455567888899999999 6777665 4458999999999998 6788899999999
Q ss_pred EEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC
Q 011101 395 NLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 395 ~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
.|+++.|.|...+..+..+.+|..|+..+|.+..+|.+
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 99999999999988888899999999999999998854
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=1.1e-06 Score=82.34 Aligned_cols=204 Identities=20% Similarity=0.181 Sum_probs=100.7
Q ss_pred CCCcCcEEEccCCcCCC--ccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccc-ccc-cc
Q 011101 199 KLEDLAIFHANSNNFTK--SIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI-FYL-DL 274 (493)
Q Consensus 199 ~l~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~-~L 274 (493)
..+.++.|||.+|.|+. .+-..+.+++.|+.|+|+.|++...+-..-..+.+|+.|-|.+..+...--..+ ... .+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45567777777777763 222334567777777777777653332211345667777776665542221111 111 45
Q ss_pred CEEEccCccCCCCccccccccccchhhcccCcCCCCCc--hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecC
Q 011101 275 DVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP--SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGN 352 (493)
Q Consensus 275 ~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 352 (493)
++|.++.|.+.. +++..+.....-+ ..+.....+..++++-|++... ++++..+.+..
T Consensus 149 telHmS~N~~rq-------------~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e 208 (418)
T KOG2982|consen 149 TELHMSDNSLRQ-------------LNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCE 208 (418)
T ss_pred hhhhhccchhhh-------------hccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeec
Confidence 566666664331 1222222221100 1122233445555555555432 34555555666
Q ss_pred CCCCCCC-cccccCCCCCCEEEcccCCCCCC-cchhhcCCCCCcEEeeeCCcCCCCCc-------cccCCCCCCEEEee
Q 011101 353 NRLTGPI-PHSFGCLSSMQYLNLAMNQFYGP-VPEIVCQLPKLVNLSLSYNYFTQVGP-------ECRKLIKRKVLDVR 422 (493)
Q Consensus 353 N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~l~~L~~L~L~ 422 (493)
|.+...- -..+..++.+.-|+|+.|+|..- .-..+.+++.|..|.+++|.+.+-.. -+..++++++|+=+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 6554221 12333445555666776666421 12345566677777777776654211 23556666666543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=2.2e-07 Score=86.99 Aligned_cols=201 Identities=18% Similarity=0.145 Sum_probs=129.7
Q ss_pred CCCcCcEEEccCCcCCCc--cCcccCCCCCCCEEECcCCCCCC--CCcccccCCCCCcEEEcccccCCCCCCccc-cccc
Q 011101 199 KLEDLAIFHANSNNFTKS--IPKMTSKLKFLYELDVSNNKLFG--GFPMEVVNIKNLTFLDLRFNSFSGPVPAEI-FYLD 273 (493)
Q Consensus 199 ~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~ 273 (493)
.+..++.|.+.++.|... ....-..++.+++|||.+|.|+. .+...+.+|+.|++|+|++|.+...|...- -..+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 344555667777776532 11112457889999999999974 344456789999999999999986554432 2338
Q ss_pred cCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCC--cccccCC-CCCcEEEe
Q 011101 274 LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL--PYEIGFL-SNSTVFDV 350 (493)
Q Consensus 274 L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l-~~L~~L~L 350 (493)
|+.|-|.+..+... .....+..++.+++|.++.|.+.... ....... +.+++|.+
T Consensus 123 l~~lVLNgT~L~w~----------------------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~ 180 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWT----------------------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ 180 (418)
T ss_pred eEEEEEcCCCCChh----------------------hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc
Confidence 99999988877532 12234556677777777777443111 1111111 13333333
Q ss_pred ---------cCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhcCCCCCcEEeeeCCcCCCC--CccccCCCCCCE
Q 011101 351 ---------GNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVNLSLSYNYFTQV--GPECRKLIKRKV 418 (493)
Q Consensus 351 ---------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~ 418 (493)
+-|++.. .++++..+.+..|.+...- ......++.+..|+|+.|+|.+. ...+.+++.|..
T Consensus 181 ~~c~~~~w~~~~~l~r-------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d 253 (418)
T KOG2982|consen 181 LPCLEQLWLNKNKLSR-------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD 253 (418)
T ss_pred CCcHHHHHHHHHhHHh-------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence 3334432 2357788888888775332 23345567888999999999885 347889999999
Q ss_pred EEeeCCcCCC
Q 011101 419 LDVRMNCILD 428 (493)
Q Consensus 419 L~L~~N~l~~ 428 (493)
|.+++|.|.+
T Consensus 254 lRv~~~Pl~d 263 (418)
T KOG2982|consen 254 LRVSENPLSD 263 (418)
T ss_pred eeccCCcccc
Confidence 9999998865
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=5.6e-08 Score=80.88 Aligned_cols=107 Identities=18% Similarity=0.326 Sum_probs=70.9
Q ss_pred hhhcccCcCCCCCchhhhhhh---hhHHHHhccccccCCCcccc-cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEc
Q 011101 299 YVTFANNEFTGPIPSSIGRAK---YLLEVLFLNNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNL 374 (493)
Q Consensus 299 ~L~l~~n~l~~~~p~~l~~l~---~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 374 (493)
.++|++|.+. .+++....+. .|...+|++|.+. .+|..| ..++.+++|+|++|.|+ .+|..+..++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 3444444443 3444444333 3444577777777 344444 34457788888888888 67777888888888888
Q ss_pred ccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcc
Q 011101 375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409 (493)
Q Consensus 375 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 409 (493)
+.|.+. ..|..+..+.+|..||..+|.+..++.+
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888887 5667777777888888888887777554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=1.5e-06 Score=58.60 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=17.0
Q ss_pred CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 368 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
+|++|+|++|+|+ .++..++++++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 3455555555554 334344455555555555555443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=7e-06 Score=55.34 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=20.1
Q ss_pred CCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC
Q 011101 392 KLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 392 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l 429 (493)
+|++|++++|+|+.+++.+.++++|+.|++++|.|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555544455555555555555555544
No 55
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.00 E-value=1e-05 Score=54.38 Aligned_cols=39 Identities=31% Similarity=0.758 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCC---CCCCCCCCceeec
Q 011101 127 QLAFKVIQRFKKRITYDPQGIANTWMG---PDVCNKYKGFVCD 166 (493)
Q Consensus 127 ~~~~~~L~~~k~~~~~d~~~~~~~W~~---~~~C~~w~gv~c~ 166 (493)
..++++|+.||.++..++.+.+.+|.. .++| +|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-eeccEEeC
Confidence 467899999999998888889999994 5788 99999995
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=1.5e-06 Score=80.45 Aligned_cols=222 Identities=19% Similarity=0.160 Sum_probs=145.5
Q ss_pred hhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----C-------cccccCCCCCcEEEcccc
Q 011101 195 DFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----F-------PMEVVNIKNLTFLDLRFN 259 (493)
Q Consensus 195 ~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~-------p~~l~~l~~L~~L~Ls~n 259 (493)
..+..+..++.++|++|.|... +...+.+-.+|+..+++.-.. |. + -..+..++.|+..+||.|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 4466688999999999999754 334456678899999886432 32 2 234567899999999999
Q ss_pred cCCCCCCcccccc-----ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 260 SFSGPVPAEIFYL-----DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 260 ~l~~~~p~~~~~~-----~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
.|....+..+... .|++|.|++|.+.-.--..++. -...+..|+- ..+-+.|+.+....|++...
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk---al~~la~nKK-------aa~kp~Le~vicgrNRleng 172 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK---ALFHLAYNKK-------AADKPKLEVVICGRNRLENG 172 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH---HHHHHHHHhh-------hccCCCceEEEeccchhccC
Confidence 9987777665432 8999999999875221111111 1112222221 12334566666677766532
Q ss_pred Cc----ccccCCCCCcEEEecCCCCCCC-----CcccccCCCCCCEEEcccCCCCCCc----chhhcCCCCCcEEeeeCC
Q 011101 335 LP----YEIGFLSNSTVFDVGNNRLTGP-----IPHSFGCLSSMQYLNLAMNQFYGPV----PEIVCQLPKLVNLSLSYN 401 (493)
Q Consensus 335 ~p----~~l~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N 401 (493)
-. ..+..-.+|+++.+..|.|.-. +-..+..+++|+.|||.+|-++-.. ...++.++.|+.|.+.+|
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 11 1122235899999999998733 1123446789999999999887432 344566778999999999
Q ss_pred cCCCCCc-----cc--cCCCCCCEEEeeCCcCC
Q 011101 402 YFTQVGP-----EC--RKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 402 ~l~~~~~-----~~--~~l~~L~~L~L~~N~l~ 427 (493)
-++.-.. .| ...++|..|-..+|.+.
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8886432 12 34678888888888654
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00011 Score=73.87 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=51.4
Q ss_pred hhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccc-cCCCCCCcccccccc
Q 011101 196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN-SFSGPVPAEIFYLDL 274 (493)
Q Consensus 196 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~L 274 (493)
.+..+.+++.|++++|.++ .+|. --.+|++|+++++.-...+|..+ ..+|++|++++| .+. .+|. +|
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-----sL 114 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-----SV 114 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-----cc
Confidence 3566788999999999887 3452 23469999998754434566544 257888888888 443 4443 56
Q ss_pred CEEEccCccC
Q 011101 275 DVLFLNNNKF 284 (493)
Q Consensus 275 ~~L~L~~n~l 284 (493)
+.|+++.+..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777665543
No 58
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=97.73 E-value=7.1e-06 Score=78.28 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHhhhceeeeccchhh
Q 011101 2 HMMKKKAKMGTNIIVYFLCAFTLILHSSLHYEVAAGDVV 40 (493)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (493)
|++|++|||| |+++|.+|++|++.||||+.+|+|+.
T Consensus 295 q~lg~~veme---ia~~leen~sllk~gy~fe~~gpr~~ 330 (353)
T KOG3735|consen 295 QVLGNAVEME---IALELEENASLLKFGYHFEQQGPRER 330 (353)
T ss_pred hhcccHHHHH---HHHHHHhcccccccccccCCCCCchh
Confidence 8999999999 99999999999999999999999995
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=8.7e-05 Score=74.46 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=43.5
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCC-CCCCCCcccccCCCCCc
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNN-KLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~ 252 (493)
.+++.|+++++.++. +|. -..+|++|.++++.--..+|..+ ..+|++|++++| .+ ..+| .+|+
T Consensus 52 ~~l~~L~Is~c~L~s----LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP------~sLe 115 (426)
T PRK15386 52 RASGRLYIKDCDIES----LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLP------ESVR 115 (426)
T ss_pred cCCCEEEeCCCCCcc----cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccc------cccc
Confidence 457778888777766 441 12357788887754434555444 256788888877 44 2344 3466
Q ss_pred EEEcccccC
Q 011101 253 FLDLRFNSF 261 (493)
Q Consensus 253 ~L~Ls~n~l 261 (493)
.|+++++..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 677766554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=5.8e-05 Score=67.33 Aligned_cols=103 Identities=20% Similarity=0.106 Sum_probs=70.3
Q ss_pred hhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhcCCCCCcEEee
Q 011101 320 YLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVNLSL 398 (493)
Q Consensus 320 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L 398 (493)
....+||++|.+.. -..|..+..|.+|.|++|+|+..-|..-..+++|+.|.|.+|.|.... -.-+..+++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34567777777763 235667788888888888888555554445677888888888776321 122556778888888
Q ss_pred eCCcCCCCC----ccccCCCCCCEEEeeCC
Q 011101 399 SYNYFTQVG----PECRKLIKRKVLDVRMN 424 (493)
Q Consensus 399 s~N~l~~~~----~~~~~l~~L~~L~L~~N 424 (493)
-+|.++... -.+..+++|+.||...=
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888877642 24677888888887643
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=4.2e-05 Score=82.81 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=95.1
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcc---------c------CCCCCCCEEECcCCCCC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKM---------T------SKLKFLYELDVSNNKLF 238 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~---------~------~~l~~L~~L~Ls~n~l~ 238 (493)
-+++.+++.+..... ..-..+.+.. |++|.|.+-......-.. + ..-.+|++||+++....
T Consensus 60 f~ltki~l~~~~~~~---~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~ 135 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQH---QTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF 135 (699)
T ss_pred heeEEeeccceecch---hHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence 457777777766655 3333344444 666666554332110000 0 01145666666664432
Q ss_pred CC-Ccccc-cCCCCCcEEEcccccCCCCCCccccc--cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchh
Q 011101 239 GG-FPMEV-VNIKNLTFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSS 314 (493)
Q Consensus 239 ~~-~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~ 314 (493)
.. -+..+ ..|++|+.|.+++-.+...--..+.. .+|..||+|+++++ .. ..
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-----------------------nl--~G 190 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-----------------------NL--SG 190 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-----------------------Cc--HH
Confidence 11 11112 23566666666654443211001111 15556666555554 22 56
Q ss_pred hhhhhhhHHHHhccccccC-CCcccccCCCCCcEEEecCCCCCCCC------cccccCCCCCCEEEcccCCCCCCc
Q 011101 315 IGRAKYLLEVLFLNNFFTG-CLPYEIGFLSNSTVFDVGNNRLTGPI------PHSFGCLSSMQYLNLAMNQFYGPV 383 (493)
Q Consensus 315 l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~~ 383 (493)
++++++|+.|.+.+-.+.. ..-..+.++++|+.||+|.......- -+.-..+++|+.||.|++.+.+.+
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 7888889998888777663 22245677888888888887655211 112224667777777776665433
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00013 Score=65.18 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=72.4
Q ss_pred CCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc--cccCCCCCCEE
Q 011101 342 LSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVL 419 (493)
Q Consensus 342 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L 419 (493)
+.+...+||++|.+. .+ ..|..+..|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|.|..+.. -+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 356788999999998 33 357788999999999999997666655557889999999999988643 56789999999
Q ss_pred EeeCCcCCCCCC
Q 011101 420 DVRMNCILDLPN 431 (493)
Q Consensus 420 ~L~~N~l~~lp~ 431 (493)
.+-+|.++....
T Consensus 119 tll~Npv~~k~~ 130 (233)
T KOG1644|consen 119 TLLGNPVEHKKN 130 (233)
T ss_pred eecCCchhcccC
Confidence 999999887554
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=7.2e-05 Score=81.02 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=79.3
Q ss_pred hhhhHHHHhccccccCC-CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC-CcchhhcCCCCCcE
Q 011101 318 AKYLLEVLFLNNFFTGC-LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG-PVPEIVCQLPKLVN 395 (493)
Q Consensus 318 l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~ 395 (493)
+++|+.|.+.+-.+... +-....++++|..||+|+.+++. + ..++++++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 47788888877666432 22344678999999999999983 3 678889999999988866653 22345778999999
Q ss_pred EeeeCCcCCCCCc-------cccCCCCCCEEEeeCCcCCC
Q 011101 396 LSLSYNYFTQVGP-------ECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 396 L~Ls~N~l~~~~~-------~~~~l~~L~~L~L~~N~l~~ 428 (493)
||+|..+...... .-..+++|+.||.+++.+..
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999976655321 12458899999999776654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.32 E-value=0.00012 Score=67.97 Aligned_cols=101 Identities=20% Similarity=0.118 Sum_probs=60.8
Q ss_pred hhhhhHHHHhccccccCCCcccccCCCCCcEEEecCC--CCCCCCcccccCCCCCCEEEcccCCCCCCcchh---hcCCC
Q 011101 317 RAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNN--RLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI---VCQLP 391 (493)
Q Consensus 317 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~ 391 (493)
.+..|+.|.+.+..++.. ..|-.+++|+.|+++.| .+.+.+.-....+++|++|+|++|+|.. ... +..+.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 344556666666665532 23455677777777777 5555555455556777888888877762 222 34456
Q ss_pred CCcEEeeeCCcCCCCCc----cccCCCCCCEEEe
Q 011101 392 KLVNLSLSYNYFTQVGP----ECRKLIKRKVLDV 421 (493)
Q Consensus 392 ~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~L 421 (493)
+|..||+.+|..+.... .|.-+++|++||-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 67777777777666422 3455666666554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00032 Score=65.21 Aligned_cols=96 Identities=23% Similarity=0.206 Sum_probs=73.4
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccC--CCCCCcchhhcCCCCCcEEeeeCCcCCCC--Cccc
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN--QFYGPVPEIVCQLPKLVNLSLSYNYFTQV--GPEC 410 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~ 410 (493)
+......+..|+.|++.+..++. + ..|-.|++|+.|.++.| ++.+.+.-....+++|++|++++|+|..+ ...+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44445566788888888887772 2 34567889999999999 66666655556679999999999999863 3356
Q ss_pred cCCCCCCEEEeeCCcCCCCCCC
Q 011101 411 RKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 411 ~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
..+.+|..|++.+|..+.+-+.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dy 134 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDY 134 (260)
T ss_pred hhhcchhhhhcccCCccccccH
Confidence 7888999999999988886544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.0002 Score=67.01 Aligned_cols=100 Identities=17% Similarity=0.075 Sum_probs=75.7
Q ss_pred hhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhcCCCCCcE
Q 011101 317 RAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVN 395 (493)
Q Consensus 317 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~ 395 (493)
.+.+.++|++.++.++.+ .....++.|++|.|+-|+|+. + ..|..+++|++|+|..|.|...- -..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 456778888888888742 234678899999999999983 3 35678899999999999997431 234678899999
Q ss_pred EeeeCCcCCCCC-c-----cccCCCCCCEEE
Q 011101 396 LSLSYNYFTQVG-P-----ECRKLIKRKVLD 420 (493)
Q Consensus 396 L~Ls~N~l~~~~-~-----~~~~l~~L~~L~ 420 (493)
|.|..|.-.+.. . .+..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999998876642 2 356788888775
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.91 E-value=0.00035 Score=68.91 Aligned_cols=274 Identities=14% Similarity=0.064 Sum_probs=154.3
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcC-CCccCcc-cCCCCCCCEEECcCC-CCCCCCcc-cccCCC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNF-TKSIPKM-TSKLKFLYELDVSNN-KLFGGFPM-EVVNIK 249 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i-~~~~p~~-~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~ 249 (493)
..++.|.++|..-.+. -.+-.....++++++|++.++.. +...-.. -..+.+|++|+|..| .++...-. -..+++
T Consensus 138 g~lk~LSlrG~r~v~~-sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD-SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCc-chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 5678888888764431 02334456788899998888763 3221112 245788999999884 44432222 224688
Q ss_pred CCcEEEccccc-CCCCCCcccc--ccccCEEEccCccCCCCcccccccc-----ccchhhcccCcCCCCCc--hhhhhhh
Q 011101 250 NLTFLDLRFNS-FSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENIGST-----GALYVTFANNEFTGPIP--SSIGRAK 319 (493)
Q Consensus 250 ~L~~L~Ls~n~-l~~~~p~~~~--~~~L~~L~L~~n~l~~~~p~~~~~~-----~~l~L~l~~n~l~~~~p--~~l~~l~ 319 (493)
+|++|+++++. +++..-..+. ...++.+.+.+|.=. .-+.+... ..+.+++..|....... ..-..+.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 99999999885 4431111111 114555655544311 11122111 12255555553221111 1112356
Q ss_pred hhHHHHhccccccCCCc--ccccCCCCCcEEEecCCC-CCCCCcccc-cCCCCCCEEEcccCCCCCC--cchhhcCCCCC
Q 011101 320 YLLEVLFLNNFFTGCLP--YEIGFLSNSTVFDVGNNR-LTGPIPHSF-GCLSSMQYLNLAMNQFYGP--VPEIVCQLPKL 393 (493)
Q Consensus 320 ~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L 393 (493)
.|+.|+.+++...+..+ .-..+..+|++|-++.++ ++..-...+ .+...|+.+++..+..... +...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 78889888765532211 122466899999999887 332222222 2567899999988865321 22222456889
Q ss_pred cEEeeeCCcCC-CC-Cc----cccCCCCCCEEEeeCCcCCCCCCCCCchhhcccccCCCCCCCCCCCcccCCC
Q 011101 394 VNLSLSYNYFT-QV-GP----ECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCA 460 (493)
Q Consensus 394 ~~L~Ls~N~l~-~~-~~----~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~ 460 (493)
+.|.|+++.+. +. +. .-..+..|..+.|++.....- ..+.....|.++++..+++|.
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d----------~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD----------ATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH----------HHHHHHhhCcccceeeeechh
Confidence 99999988643 32 11 124466788888887754331 122334678888888888885
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.77 E-value=8.2e-05 Score=77.17 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=29.2
Q ss_pred hHHHHhccccccCC----CcccccCC-CCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCC
Q 011101 321 LLEVLFLNNFFTGC----LPYEIGFL-SNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFY 380 (493)
Q Consensus 321 L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 380 (493)
+.+|++.+|.+... +...+..+ ..+++++++.|.|+.. +...+..+..+++|.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 45566666665532 11222333 4455666666665532 2223334445566666666554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.00051 Score=64.31 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=68.9
Q ss_pred CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc--cccCCCCCCE
Q 011101 341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKV 418 (493)
Q Consensus 341 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~ 418 (493)
.+.+.+.|++.++.+.+ + .....|+.|+.|.||-|+|+..- .+..+++|++|.|+.|.|.++.. .+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35678899999999984 2 24458899999999999998543 36778999999999999998743 5789999999
Q ss_pred EEeeCCcCCC
Q 011101 419 LDVRMNCILD 428 (493)
Q Consensus 419 L~L~~N~l~~ 428 (493)
|.|..|.=.+
T Consensus 93 LWL~ENPCc~ 102 (388)
T KOG2123|consen 93 LWLDENPCCG 102 (388)
T ss_pred HhhccCCccc
Confidence 9999996444
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.75 E-value=0.00017 Score=74.91 Aligned_cols=181 Identities=18% Similarity=0.138 Sum_probs=89.9
Q ss_pred CCCCEEECcCCCCCCCC----cccccCCCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCcc----c
Q 011101 225 KFLYELDVSNNKLFGGF----PMEVVNIKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLP----E 290 (493)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p----~ 290 (493)
..|..|.|.+|.+.... ...+..+..|+.|++++|.+.+..-..+.. ..+++|++..|.+++..- .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34778888888886432 234556788888889888887332222111 156667777777664322 2
Q ss_pred cccccccc-hhhcccCcCCC----CCchhhh----hhhhhHHHHhccccccCCC----cccccCCCC-CcEEEecCCCCC
Q 011101 291 NIGSTGAL-YVTFANNEFTG----PIPSSIG----RAKYLLEVLFLNNFFTGCL----PYEIGFLSN-STVFDVGNNRLT 356 (493)
Q Consensus 291 ~~~~~~~l-~L~l~~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~Ls~N~l~ 356 (493)
.+.....+ .++++.|.+.. .++..+. ...++++|.+.+|.++... ...+..... +..|++..|++.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 22222223 55566555531 1122222 2445566666665554211 112223333 444555555555
Q ss_pred CC----CcccccCC-CCCCEEEcccCCCCCCcc----hhhcCCCCCcEEeeeCCcCCC
Q 011101 357 GP----IPHSFGCL-SSMQYLNLAMNQFYGPVP----EIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 357 ~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
+. +...+..+ ..++.++++.|.|+.... ..+..+..++.|.+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 32 11222233 344555555555553322 223334455555555555554
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.51 E-value=0.011 Score=49.83 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=52.5
Q ss_pred hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCC
Q 011101 314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL 393 (493)
Q Consensus 314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 393 (493)
.|.++.+|+.+.+.. .+...-...|..+.+|+.+.+.++ +...-...|..+.+|+.+.+.+ .+.......+..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555666666653 344344456667777777777765 5534445566666777777765 3332333455567777
Q ss_pred cEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCC
Q 011101 394 VNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 394 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp 430 (493)
+.+++..+ +..+.. .|... +|+.+.+.. .++.++
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 77777654 554433 44555 777777664 444443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.27 E-value=0.038 Score=46.36 Aligned_cols=59 Identities=17% Similarity=0.070 Sum_probs=19.7
Q ss_pred hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcc
Q 011101 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR 257 (493)
Q Consensus 197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 257 (493)
|..+.+|+.+.+.. .+...-...|.++.+|+.+.+..+ +.......|.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 33344444444432 233222333444444444444443 332223334444444444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.011 Score=33.17 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=4.2
Q ss_pred CEEEcccCCCC
Q 011101 370 QYLNLAMNQFY 380 (493)
Q Consensus 370 ~~L~Ls~N~l~ 380 (493)
++|+|++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.77 E-value=0.017 Score=30.17 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=6.8
Q ss_pred CCCEEEeeCCcCCCCC
Q 011101 415 KRKVLDVRMNCILDLP 430 (493)
Q Consensus 415 ~L~~L~L~~N~l~~lp 430 (493)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.017 Score=32.33 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=9.2
Q ss_pred CcEEEccCCcCCCccCcccC
Q 011101 203 LAIFHANSNNFTKSIPKMTS 222 (493)
Q Consensus 203 L~~L~L~~n~i~~~~p~~~~ 222 (493)
|++|||++|+|+ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.22 E-value=0.001 Score=60.77 Aligned_cols=89 Identities=25% Similarity=0.252 Sum_probs=75.4
Q ss_pred ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCC
Q 011101 337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR 416 (493)
Q Consensus 337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L 416 (493)
..+......+.||++.|++. .+-..|.-++.|..|+++.|.+. .+|.++..+..+..+++..|..+..|.++...+.+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 34566788899999999887 45566777788999999999987 78888888888999999999999999899999999
Q ss_pred CEEEeeCCcCC
Q 011101 417 KVLDVRMNCIL 427 (493)
Q Consensus 417 ~~L~L~~N~l~ 427 (493)
+.+++..|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999988753
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.86 E-value=0.016 Score=60.53 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=14.9
Q ss_pred CCcCcEEEccCCcCCCc--cCcccCCCCCCCEEECcC
Q 011101 200 LEDLAIFHANSNNFTKS--IPKMTSKLKFLYELDVSN 234 (493)
Q Consensus 200 l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~Ls~ 234 (493)
++.|+.|.+..+.-... +-.....+.+|++|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 44555555544422211 112234445555555554
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.053 Score=28.24 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=6.4
Q ss_pred CCcEEeeeCCcCCCC
Q 011101 392 KLVNLSLSYNYFTQV 406 (493)
Q Consensus 392 ~L~~L~Ls~N~l~~~ 406 (493)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.28 E-value=0.013 Score=53.69 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=45.3
Q ss_pred hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCC
Q 011101 299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ 378 (493)
Q Consensus 299 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 378 (493)
.||++.|.+. .+-..|..++.|+.|+++.|.+. .+|..++.+..++.+++..|.++ ..|.+++..++++++++-+|.
T Consensus 46 vld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 46 VLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred eehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 3444444433 23344555666666666666655 45566666666666666666665 566666666666666666665
Q ss_pred CC
Q 011101 379 FY 380 (493)
Q Consensus 379 l~ 380 (493)
++
T Consensus 123 ~~ 124 (326)
T KOG0473|consen 123 FF 124 (326)
T ss_pred ch
Confidence 54
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.70 E-value=0.11 Score=54.20 Aligned_cols=108 Identities=15% Similarity=-0.026 Sum_probs=51.1
Q ss_pred hhhhHHHHhccccccCC--CcccccCCCCCcEEEecCC-CCCCCC----cccccCCCCCCEEEcccCC-CCCCcchhhcC
Q 011101 318 AKYLLEVLFLNNFFTGC--LPYEIGFLSNSTVFDVGNN-RLTGPI----PHSFGCLSSMQYLNLAMNQ-FYGPVPEIVCQ 389 (493)
Q Consensus 318 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N-~l~~~~----p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~ 389 (493)
.+.|+.|.+.++.-... +-.....+..|+.|+++++ ...... ......+.+|+.|+++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 34555555555433222 2223344556666666552 111011 1122334566666666665 44433333332
Q ss_pred -CCCCcEEeeeCCc-CCCC--CccccCCCCCCEEEeeCCc
Q 011101 390 -LPKLVNLSLSYNY-FTQV--GPECRKLIKRKVLDVRMNC 425 (493)
Q Consensus 390 -l~~L~~L~Ls~N~-l~~~--~~~~~~l~~L~~L~L~~N~ 425 (493)
+++|+.|.+.++. +++. ......+++|++|+++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 5566666665555 4432 1223455566666666543
No 81
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=90.07 E-value=1.2 Score=45.26 Aligned_cols=9 Identities=0% Similarity=0.080 Sum_probs=5.1
Q ss_pred HHhhhceee
Q 011101 25 ILHSSLHYE 33 (493)
Q Consensus 25 ~~~~~~~~~ 33 (493)
+||.+++..
T Consensus 291 fi~~fi~k~ 299 (569)
T KOG3671|consen 291 FIYDFIQKN 299 (569)
T ss_pred ccccchhcC
Confidence 455666655
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.70 E-value=0.28 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.5
Q ss_pred CCCCCEEEeeCCcCCCCCCC
Q 011101 413 LIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 413 l~~L~~L~L~~N~l~~lp~~ 432 (493)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788999999999998864
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.70 E-value=0.28 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.5
Q ss_pred CCCCCEEEeeCCcCCCCCCC
Q 011101 413 LIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 413 l~~L~~L~L~~N~l~~lp~~ 432 (493)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788999999999998864
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=89.65 E-value=0.44 Score=48.31 Aligned_cols=223 Identities=13% Similarity=0.041 Sum_probs=102.7
Q ss_pred cCcEEEccCCcCCCccCcccCC---CCCCCEEECcCCCCC---CCCcccccCCCCCcEEEcccccCCCC----CCccccc
Q 011101 202 DLAIFHANSNNFTKSIPKMTSK---LKFLYELDVSNNKLF---GGFPMEVVNIKNLTFLDLRFNSFSGP----VPAEIFY 271 (493)
Q Consensus 202 ~L~~L~L~~n~i~~~~p~~~~~---l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~ 271 (493)
.+++++|+.|.....++..+.. -..|+.++.+...+. +..+-..+.-++|++.+++.|..+.. ++.....
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 3455555555555444433221 123455555544432 11122223345666666666654421 1211111
Q ss_pred ---c--ccCEEEccCccCCCCccccc-----cccc--cchhhcccCcCCCCC-chhhhhhhhhHHHHhccccccCCCcc-
Q 011101 272 ---L--DLDVLFLNNNKFSQNLPENI-----GSTG--ALYVTFANNEFTGPI-PSSIGRAKYLLEVLFLNNFFTGCLPY- 337 (493)
Q Consensus 272 ---~--~L~~L~L~~n~l~~~~p~~~-----~~~~--~l~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~- 337 (493)
. ++ +|++..+.....-+..+ .+-. -.++++..|...+.- -..-.+-.++++|.+.+|.+.+..-.
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 1 44 55555554432222111 0001 125566655443211 11111123477788888877765433
Q ss_pred -cccCCCCCcEEEecCCCCC-----CCCccccc----CCCCCCEEEcccCCCCCCcch---hhcCCCCCcEEeeeCCcCC
Q 011101 338 -EIGFLSNSTVFDVGNNRLT-----GPIPHSFG----CLSSMQYLNLAMNQFYGPVPE---IVCQLPKLVNLSLSYNYFT 404 (493)
Q Consensus 338 -~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~ 404 (493)
.+..-++++.+++..-.-. +....-+. ...-+..++++.|.+....-. .+..-+.+..|++++|...
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 2334456777766543221 11111111 112477888888887643322 2334467888999998876
Q ss_pred CCC-----ccccCCCCCCEEEeeCCc
Q 011101 405 QVG-----PECRKLIKRKVLDVRMNC 425 (493)
Q Consensus 405 ~~~-----~~~~~l~~L~~L~L~~N~ 425 (493)
... ........++.+..+.|.
T Consensus 454 d~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 454 DGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred cCCCCcCccccCCCCccCCCCCCCCC
Confidence 532 123333344444444443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.40 E-value=0.36 Score=28.03 Aligned_cols=14 Identities=50% Similarity=0.494 Sum_probs=7.5
Q ss_pred CCCcEEEcccccCC
Q 011101 249 KNLTFLDLRFNSFS 262 (493)
Q Consensus 249 ~~L~~L~Ls~n~l~ 262 (493)
++|++|+|++|.|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.40 E-value=0.36 Score=28.03 Aligned_cols=14 Identities=50% Similarity=0.494 Sum_probs=7.5
Q ss_pred CCCcEEEcccccCC
Q 011101 249 KNLTFLDLRFNSFS 262 (493)
Q Consensus 249 ~~L~~L~Ls~n~l~ 262 (493)
++|++|+|++|.|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.05 E-value=0.38 Score=28.04 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCCCEEEeeCCcCCCCCC
Q 011101 414 IKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 414 ~~L~~L~L~~N~l~~lp~ 431 (493)
.+|+.|++++|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 368889999999999986
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=0.16 Score=45.75 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=55.4
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCcc-CcccC-CCCCCCEEECcCC-CCCCCCcccccCCCC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSI-PKMTS-KLKFLYELDVSNN-KLFGGFPMEVVNIKN 250 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~ 250 (493)
..++.+|-++..|.. .--+.+..++.++.|.+.++.--+.. -+.++ -..+|+.|+|++| +||..--..+..+++
T Consensus 101 ~~IeaVDAsds~I~~---eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMY---EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHH---HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 458899999988877 44556777888888888777543211 01122 3578889999876 466544455667788
Q ss_pred CcEEEcccc
Q 011101 251 LTFLDLRFN 259 (493)
Q Consensus 251 L~~L~Ls~n 259 (493)
|+.|.|.+=
T Consensus 178 Lr~L~l~~l 186 (221)
T KOG3864|consen 178 LRRLHLYDL 186 (221)
T ss_pred hHHHHhcCc
Confidence 888777653
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.62 E-value=0.062 Score=48.40 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=13.9
Q ss_pred CcEEEecCCCCCCCCcccccCCCCCCEEEcccC
Q 011101 345 STVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN 377 (493)
Q Consensus 345 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 377 (493)
++.+|-++..|..+--+.+.++..++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444444333333444444444444444
No 90
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=83.03 E-value=8.7 Score=34.93 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.1
Q ss_pred CCCCCcccc-hhHHHHHHHHHHH
Q 011101 2 HMMKKKAKM-GTNIIVYFLCAFT 23 (493)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~~~~~~ 23 (493)
|||+...|. ....||+|++.+.
T Consensus 93 hIy~~d~~v~d~~~lv~~ck~Fl 115 (205)
T PF12238_consen 93 HIYKEDSEVKDYNGLVKFCKDFL 115 (205)
T ss_pred hccCcccccccHHHHHHHHHHHh
Confidence 999999998 8888999998654
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.58 E-value=0.29 Score=27.84 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=4.8
Q ss_pred CCCEEEcccCCCC
Q 011101 368 SMQYLNLAMNQFY 380 (493)
Q Consensus 368 ~L~~L~Ls~N~l~ 380 (493)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.65 E-value=1.3 Score=25.92 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=12.6
Q ss_pred CCCCCEEEeeCCcCCCCC
Q 011101 413 LIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 413 l~~L~~L~L~~N~l~~lp 430 (493)
+.+|++|+++.|.|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 356777888888776653
No 93
>PRK15313 autotransport protein MisL; Provisional
Probab=74.62 E-value=12 Score=41.83 Aligned_cols=12 Identities=8% Similarity=0.121 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 011101 125 RIQLAFKVIQRF 136 (493)
Q Consensus 125 ~~~~~~~~L~~~ 136 (493)
......++-..|
T Consensus 642 Y~ANl~AAn~LF 653 (955)
T PRK15313 642 YLANNYAANTLF 653 (955)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=62.27 E-value=3.4 Score=41.60 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=103.5
Q ss_pred CccceEEEEcCCCC-cCCCCCccchhhhCCCcCcEEEccCC-cCCCccCc-ccCCCCCCCEEECcCCC-CCC--------
Q 011101 172 KKKAVAGVDFNGYR-FNGPDFSLSDFLEKLEDLAIFHANSN-NFTKSIPK-MTSKLKFLYELDVSNNK-LFG-------- 239 (493)
Q Consensus 172 ~~~~l~~L~L~~n~-l~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~~~p~-~~~~l~~L~~L~Ls~n~-l~~-------- 239 (493)
...++++|++.++. ++.. .....-..+.+|++|+|..| .++...-. -...+++|++|+++.+. +++
T Consensus 162 ~CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDS--SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hCCchhhhhhhcceeccHH--HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 34567777777764 2220 11122245667777777773 44432222 22346677777776652 111
Q ss_pred --------------CCc-ccc----cCCCCCcEEEccccc-CCCCCCcccc--ccccCEEEccCccCCCC-cccccc-cc
Q 011101 240 --------------GFP-MEV----VNIKNLTFLDLRFNS-FSGPVPAEIF--YLDLDVLFLNNNKFSQN-LPENIG-ST 295 (493)
Q Consensus 240 --------------~~p-~~l----~~l~~L~~L~Ls~n~-l~~~~p~~~~--~~~L~~L~L~~n~l~~~-~p~~~~-~~ 295 (493)
..+ ..| +.+.-+..+++.+|. ++..--..+. ...|+.|+.+++...+. .-.+++ +.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 000 111 233445666665664 2211111111 11788888887654221 112222 22
Q ss_pred ccc-hhhcccCcC-CCCCchhh-hhhhhhHHHHhccccccCC--CcccccCCCCCcEEEecCCCCCCCC-----cccccC
Q 011101 296 GAL-YVTFANNEF-TGPIPSSI-GRAKYLLEVLFLNNFFTGC--LPYEIGFLSNSTVFDVGNNRLTGPI-----PHSFGC 365 (493)
Q Consensus 296 ~~l-~L~l~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~ 365 (493)
.++ .+.+..+.. +..--..+ .+...|+.+++..+..... +...-.+++.|+.|.|+++...... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 233 455555542 11100111 2345666666666554321 1112234556666666655433111 112223
Q ss_pred CCCCCEEEcccCCCC-CCcchhhcCCCCCcEEeeeCCc
Q 011101 366 LSSMQYLNLAMNQFY-GPVPEIVCQLPKLVNLSLSYNY 402 (493)
Q Consensus 366 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~ 402 (493)
+..|+.|.|+++... +..-..+..+++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 455666666666432 2223334455566666666554
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.85 E-value=6.3 Score=23.31 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=5.8
Q ss_pred CCEEEcccCCCC
Q 011101 369 MQYLNLAMNQFY 380 (493)
Q Consensus 369 L~~L~Ls~N~l~ 380 (493)
|++|+|++|.|.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 444555555443
No 96
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=61.12 E-value=58 Score=34.04 Aligned_cols=6 Identities=33% Similarity=1.138 Sum_probs=2.8
Q ss_pred CCCCCC
Q 011101 149 NTWMGP 154 (493)
Q Consensus 149 ~~W~~~ 154 (493)
.-|.+.
T Consensus 284 PlWl~r 289 (582)
T PF03276_consen 284 PLWLGR 289 (582)
T ss_pred chhhhc
Confidence 345543
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.10 E-value=13 Score=38.14 Aligned_cols=196 Identities=14% Similarity=0.023 Sum_probs=97.7
Q ss_pred CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCC----CccccccccCEEEccCccCCCCccccccccc---
Q 011101 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPV----PAEIFYLDLDVLFLNNNKFSQNLPENIGSTG--- 296 (493)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~--- 296 (493)
-..+++++++.|.+....|..+..-. --|.++.|.++... +..-....+.+++|+.|.....+|..+..+.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 35578888888888666555443211 11566666655322 2111223788888888888877776543221
Q ss_pred -cchhhcccCcCCC---CCchhhhhhhhhHHHHhccccccC----CCc----ccccCCCCCcEEEecCCCCCCCCcccc-
Q 011101 297 -ALYVTFANNEFTG---PIPSSIGRAKYLLEVLFLNNFFTG----CLP----YEIGFLSNSTVFDVGNNRLTGPIPHSF- 363 (493)
Q Consensus 297 -~l~L~l~~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~~----~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l- 363 (493)
...++.+...+.- .-+-..+..+.|...+++.|.... .+. ..|..-.++ .|++.......+-+..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 1134444333221 011122334566677777665431 111 223333455 56665555443222111
Q ss_pred cCC-----CCCCEEEcccCCCCCCc--chhhcCCCCCcEEeeeCCcCCCCCc---cccCCCCCCEEEeeC
Q 011101 364 GCL-----SSMQYLNLAMNQFYGPV--PEIVCQLPKLVNLSLSYNYFTQVGP---ECRKLIKRKVLDVRM 423 (493)
Q Consensus 364 ~~l-----~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~L~~ 423 (493)
-.+ ..=-+++++.|...+.- -..+.+ ..+++|++++|.+.+... ....-++++.+++..
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccc-eeeeEeeccccccccccccccceeeccccccccccc
Confidence 000 11134566665544321 111222 358888888888877533 334455666776654
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.03 E-value=5 Score=41.88 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCCCcEEEecCCCCCCC--CcccccCCCCCCEEEcccC--CCCCCcchhhcC--CCCCcEEeeeCCcCCC
Q 011101 341 FLSNSTVFDVGNNRLTGP--IPHSFGCLSSMQYLNLAMN--QFYGPVPEIVCQ--LPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 341 ~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~ 405 (493)
+...+..++|++|++... +...-...++|..|+|++| .+.. ..++.+ ...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 445677788999988731 1111124478999999999 4432 122222 2357889999998876
No 99
>PRK15313 autotransport protein MisL; Provisional
Probab=57.22 E-value=22 Score=39.73 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=2.9
Q ss_pred HHHHhhh
Q 011101 133 IQRFKKR 139 (493)
Q Consensus 133 L~~~k~~ 139 (493)
+..+.++
T Consensus 654 ~~tLhDR 660 (955)
T PRK15313 654 MTRLHDR 660 (955)
T ss_pred hccHHHh
Confidence 3344443
No 100
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=52.38 E-value=39 Score=32.12 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhh
Q 011101 15 IVYFLCAFTLILHSS 29 (493)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (493)
|.-|+-..+.|+|+-
T Consensus 102 is~f~~qv~~lv~lv 116 (274)
T PLN02983 102 ISEFMTQVSSLVKLV 116 (274)
T ss_pred HHHHHHHHHHHHhhh
Confidence 788899999999973
No 101
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=51.85 E-value=47 Score=34.68 Aligned_cols=16 Identities=25% Similarity=0.048 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhceee
Q 011101 18 FLCAFTLILHSSLHYE 33 (493)
Q Consensus 18 ~~~~~~~~~~~~~~~~ 33 (493)
+-|||.+-+..|.|.-
T Consensus 207 LeKenIsYlSsgLhHv 222 (574)
T PF07462_consen 207 LEKENISYLSSGLHHV 222 (574)
T ss_pred cchhhhhhhhhhHHHH
Confidence 3468888888888873
No 102
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=50.26 E-value=13 Score=38.06 Aligned_cols=8 Identities=13% Similarity=0.007 Sum_probs=3.7
Q ss_pred ceEEEEcC
Q 011101 175 AVAGVDFN 182 (493)
Q Consensus 175 ~l~~L~L~ 182 (493)
.++.|++.
T Consensus 347 ~~tVL~~K 354 (817)
T KOG1925|consen 347 MTTVLDPK 354 (817)
T ss_pred eeeecCcc
Confidence 34445544
No 103
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.38 E-value=15 Score=38.58 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=39.7
Q ss_pred hhhhHHHHhccccccCCC--cccccCCCCCcEEEecCC--CCCCCCcccccCC--CCCCEEEcccCCCCCC
Q 011101 318 AKYLLEVLFLNNFFTGCL--PYEIGFLSNSTVFDVGNN--RLTGPIPHSFGCL--SSMQYLNLAMNQFYGP 382 (493)
Q Consensus 318 l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~ 382 (493)
...+..+.|++|++...- ..--...++|+.|+|++| .+. ...++..+ ..|++|.|.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 345667778888887321 111234578999999999 443 22233332 3588999999988743
No 104
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=37.78 E-value=1.3e+02 Score=30.82 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=2.7
Q ss_pred hceeee
Q 011101 29 SLHYEV 34 (493)
Q Consensus 29 ~~~~~~ 34 (493)
|..|+-
T Consensus 77 GLnFqs 82 (409)
T KOG4590|consen 77 GLTFQS 82 (409)
T ss_pred cccccC
Confidence 444444
No 105
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.62 E-value=2.2e+02 Score=25.33 Aligned_cols=10 Identities=0% Similarity=0.032 Sum_probs=4.8
Q ss_pred HHHHHhhhce
Q 011101 22 FTLILHSSLH 31 (493)
Q Consensus 22 ~~~~~~~~~~ 31 (493)
++++|..++.
T Consensus 91 Iv~~Iv~~~C 100 (179)
T PF13908_consen 91 IVVLIVCFCC 100 (179)
T ss_pred HHHhHhhhee
Confidence 3455555543
No 106
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.56 E-value=3.9e+02 Score=26.66 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=4.1
Q ss_pred eeeeccchh
Q 011101 31 HYEVAAGDV 39 (493)
Q Consensus 31 ~~~~~~~~~ 39 (493)
-+|+-+-.|
T Consensus 360 i~eV~d~sm 368 (488)
T KOG3895|consen 360 IIEVMDSSM 368 (488)
T ss_pred eeeeccccc
Confidence 345555444
No 107
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.30 E-value=39 Score=42.52 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=27.7
Q ss_pred EcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101 373 NLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 373 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
||++|+|+..-...|..+.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999986666778888999999999998775
No 108
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.14 E-value=44 Score=19.03 Aligned_cols=11 Identities=45% Similarity=0.407 Sum_probs=5.9
Q ss_pred CCCCEEECcCC
Q 011101 225 KFLYELDVSNN 235 (493)
Q Consensus 225 ~~L~~L~Ls~n 235 (493)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 109
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=26.87 E-value=25 Score=17.06 Aligned_cols=7 Identities=57% Similarity=0.871 Sum_probs=1.7
Q ss_pred CCCCCcc
Q 011101 2 HMMKKKA 8 (493)
Q Consensus 2 ~~~~~~~ 8 (493)
|.||+|.
T Consensus 8 h~Mgkks 14 (14)
T PF02044_consen 8 HFMGKKS 14 (14)
T ss_dssp CT-----
T ss_pred eeeccCC
Confidence 8899873
No 110
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=4.7e+02 Score=25.89 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=6.8
Q ss_pred HHHHHhhhceeeecc
Q 011101 22 FTLILHSSLHYEVAA 36 (493)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (493)
+++.||.+-|..-.|
T Consensus 93 ~~M~ik~~~hVd~nG 107 (365)
T KOG2391|consen 93 STMIIKVHEHVDPNG 107 (365)
T ss_pred chhhhHHhhccCCCC
Confidence 344455544444333
No 111
>PHA03211 serine/threonine kinase US3; Provisional
Probab=24.71 E-value=91 Score=32.58 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011101 67 PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP 105 (493)
Q Consensus 67 p~~~~~~~~~~~p~p~p~~~~~~~p~ppp~p~~~~~~p~ 105 (493)
+|..++..+.+++++.+++..+--||||++++|++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (461)
T PHA03211 24 EPETTTRCVFPPETFYNPPRGVCFPPPPEHDPPSPHGAR 62 (461)
T ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCch
No 112
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=24.59 E-value=41 Score=23.01 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=19.2
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHh
Q 011101 3 MMKKKAKMGTNIIVYFLCAFTLILH 27 (493)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (493)
..|.+.||+ +|+++.+|...++
T Consensus 24 f~g~~~e~~---f~~yil~na~~Lk 45 (51)
T PF08387_consen 24 FRGEENELE---FAKYILENAPVLK 45 (51)
T ss_pred eeCcHHHHH---HHHHHHhhhhhhc
Confidence 568889999 9999999998875
No 113
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=22.18 E-value=4.4e+02 Score=30.44 Aligned_cols=88 Identities=19% Similarity=0.392 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 011101 53 GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKV 132 (493)
Q Consensus 53 ~~~~~~~~~~p~~~p~~~~~~~~~~~p~p~p~~~~~~~p~ppp~p~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 132 (493)
........+.+.+.|..++++++.+.++.++.+..++.|.+.+++++++..+..+....++...........--....+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrG~a~ai 127 (1228)
T PRK12270 48 AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAV 127 (1228)
T ss_pred CcccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccCCCcceeecccHHHHH
Q ss_pred HHHHhhhc
Q 011101 133 IQRFKKRI 140 (493)
Q Consensus 133 L~~~k~~~ 140 (493)
...|..++
T Consensus 128 AkNM~aSL 135 (1228)
T PRK12270 128 AKNMDASL 135 (1228)
T ss_pred HHHHHhhh
No 114
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.05 E-value=58 Score=41.15 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=27.9
Q ss_pred EccCCcCCCccCcccCCCCCCCEEECcCCCCC
Q 011101 207 HANSNNFTKSIPKMTSKLKFLYELDVSNNKLF 238 (493)
Q Consensus 207 ~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~ 238 (493)
||++|+|+..-...|..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999777778899999999999999875
No 115
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.62 E-value=5.8e+02 Score=27.87 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHHH
Q 011101 131 KVIQRF 136 (493)
Q Consensus 131 ~~L~~~ 136 (493)
+.+..|
T Consensus 602 ~~~a~~ 607 (620)
T PRK14948 602 KNLADF 607 (620)
T ss_pred HHHHHH
Confidence 333333
Done!