Query 011101
Match_columns 493
No_of_seqs 631 out of 5000
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 20:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 7.7E-40 2.6E-44 322.9 12.5 296 127-430 5-308 (313)
2 4eco_A Uncharacterized protein 100.0 8.9E-37 3E-41 329.3 13.8 297 123-432 25-475 (636)
3 3rgz_A Protein brassinosteroid 100.0 7.9E-36 2.7E-40 328.8 15.9 295 124-433 8-363 (768)
4 3rgz_A Protein brassinosteroid 100.0 6.6E-35 2.3E-39 321.5 19.2 284 173-463 393-752 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 8.4E-35 2.9E-39 320.6 16.3 290 123-432 264-715 (876)
6 4fcg_A Uncharacterized protein 100.0 9.3E-34 3.2E-38 281.1 11.8 275 125-431 24-318 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 9.1E-33 3.1E-37 286.0 18.9 276 173-451 29-412 (455)
8 2id5_A Lingo-1, leucine rich r 100.0 2E-31 6.9E-36 277.8 17.7 290 159-451 12-337 (477)
9 1ogq_A PGIP-2, polygalacturona 100.0 9.3E-32 3.2E-36 265.0 10.1 248 201-450 50-307 (313)
10 3o6n_A APL1; leucine-rich repe 100.0 4.8E-31 1.6E-35 267.9 15.6 271 172-449 43-354 (390)
11 3v47_A TOLL-like receptor 5B a 100.0 3.9E-31 1.3E-35 273.8 14.7 256 172-430 77-411 (455)
12 3oja_B Anopheles plasmodium-re 100.0 8.2E-31 2.8E-35 280.8 17.4 298 145-449 6-360 (597)
13 1xku_A Decorin; proteoglycan, 100.0 1.1E-29 3.6E-34 252.0 20.1 247 175-432 32-281 (330)
14 2ft3_A Biglycan; proteoglycan, 100.0 1E-29 3.5E-34 252.4 18.6 223 202-430 55-280 (332)
15 4eco_A Uncharacterized protein 100.0 1.9E-30 6.5E-35 279.9 12.9 255 171-432 203-506 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 7.8E-30 2.7E-34 270.3 16.3 157 156-317 3-170 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-29 4E-34 267.3 16.6 150 299-450 328-484 (520)
18 3t6q_A CD180 antigen; protein- 100.0 1.6E-29 5.4E-34 271.3 16.0 272 175-451 255-564 (606)
19 1xku_A Decorin; proteoglycan, 100.0 1.3E-28 4.5E-33 244.1 20.5 262 156-428 30-307 (330)
20 2z80_A TOLL-like receptor 2, v 100.0 1.4E-29 4.9E-34 253.5 13.5 272 153-430 26-317 (353)
21 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-29 1.5E-33 267.7 18.2 279 171-452 77-563 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-29 1.5E-33 265.5 17.8 150 299-450 357-513 (562)
23 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-28 5.1E-33 244.0 19.8 259 159-427 34-307 (332)
24 2id5_A Lingo-1, leucine rich r 100.0 3.6E-29 1.2E-33 260.8 14.1 253 173-428 79-334 (477)
25 4g8a_A TOLL-like receptor 4; l 100.0 2E-28 6.9E-33 263.3 20.1 287 162-451 35-584 (635)
26 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-28 8.1E-33 271.9 21.1 110 321-430 268-378 (844)
27 3o6n_A APL1; leucine-rich repe 100.0 8.5E-29 2.9E-33 251.3 15.9 246 174-428 69-353 (390)
28 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.5E-33 244.0 16.2 221 199-438 79-302 (328)
29 3t6q_A CD180 antigen; protein- 100.0 4.1E-28 1.4E-32 260.2 21.3 266 160-429 14-365 (606)
30 3oja_B Anopheles plasmodium-re 100.0 1.3E-28 4.4E-33 263.8 15.8 266 174-453 99-386 (597)
31 2z7x_B TOLL-like receptor 1, v 100.0 7E-28 2.4E-32 253.7 19.2 88 340-427 321-412 (520)
32 1ziw_A TOLL-like receptor 3; i 100.0 8.9E-28 3E-32 261.2 20.3 256 173-431 24-346 (680)
33 2z66_A Variable lymphocyte rec 100.0 1.7E-28 5.9E-33 240.6 13.1 228 201-429 28-263 (306)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-27 9.7E-32 251.6 22.9 109 172-286 50-160 (562)
35 4ecn_A Leucine-rich repeat pro 100.0 3.1E-28 1.1E-32 268.4 15.2 257 171-433 445-772 (876)
36 1ziw_A TOLL-like receptor 3; i 100.0 7.3E-28 2.5E-32 261.8 17.8 275 174-451 329-626 (680)
37 3zyi_A Leucine-rich repeat-con 100.0 1.1E-27 3.8E-32 247.9 18.0 226 201-428 75-304 (452)
38 2z66_A Variable lymphocyte rec 100.0 1.6E-28 5.4E-33 240.9 10.9 244 159-406 8-263 (306)
39 1wwl_A Monocyte differentiatio 100.0 6.3E-30 2.1E-34 251.8 0.6 266 148-429 21-311 (312)
40 3zyj_A Leucine-rich repeat-con 99.9 1E-27 3.6E-32 247.3 16.7 242 178-427 47-292 (440)
41 3j0a_A TOLL-like receptor 5; m 99.9 2.9E-27 9.8E-32 263.2 20.8 257 171-434 70-401 (844)
42 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-27 2E-31 251.3 17.8 246 171-425 29-339 (606)
43 2z63_A TOLL-like receptor 4, v 99.9 3.2E-27 1.1E-31 251.2 15.6 276 172-451 74-535 (570)
44 3zyi_A Leucine-rich repeat-con 99.9 5.1E-27 1.8E-31 242.9 16.2 242 159-405 55-304 (452)
45 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-27 5.9E-32 231.1 11.5 222 177-427 14-238 (285)
46 3zyj_A Leucine-rich repeat-con 99.9 8.5E-27 2.9E-31 240.4 16.2 242 159-405 44-293 (440)
47 2z81_A CD282 antigen, TOLL-lik 99.9 5.6E-27 1.9E-31 248.4 14.8 91 174-267 74-166 (549)
48 2z80_A TOLL-like receptor 2, v 99.9 2.8E-27 9.4E-32 236.9 11.6 264 179-450 36-317 (353)
49 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-27 7.8E-32 234.0 8.7 238 175-427 11-250 (317)
50 4fmz_A Internalin; leucine ric 99.9 6.4E-26 2.2E-30 226.2 19.1 242 171-431 85-328 (347)
51 1ozn_A Reticulon 4 receptor; N 99.9 4E-26 1.4E-30 221.5 15.5 222 204-451 14-242 (285)
52 2o6q_A Variable lymphocyte rec 99.9 1.5E-25 5.3E-30 215.7 17.3 216 154-428 2-219 (270)
53 2z63_A TOLL-like receptor 4, v 99.9 1.5E-25 5.3E-30 238.2 18.8 250 171-428 25-339 (570)
54 4fmz_A Internalin; leucine ric 99.9 5.9E-25 2E-29 219.2 21.0 238 173-430 65-303 (347)
55 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-25 7.1E-30 239.8 18.5 124 305-428 455-581 (635)
56 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-24 3.9E-29 225.3 23.1 228 173-430 41-270 (457)
57 3oja_A Leucine-rich immune mol 99.9 3.7E-26 1.3E-30 238.5 11.7 223 193-427 22-250 (487)
58 1o6v_A Internalin A; bacterial 99.9 7.8E-25 2.7E-29 227.4 20.6 238 173-429 67-346 (466)
59 1o6v_A Internalin A; bacterial 99.9 9.7E-25 3.3E-29 226.7 20.6 236 173-428 45-301 (466)
60 1wwl_A Monocyte differentiatio 99.9 1.4E-26 4.8E-31 227.8 5.5 224 175-406 64-311 (312)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 4E-31 228.9 3.5 240 173-428 33-277 (317)
62 3oja_A Leucine-rich immune mol 99.9 2.9E-26 1E-30 239.2 5.2 234 173-422 33-270 (487)
63 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-24 5.1E-29 224.4 17.0 234 173-431 84-356 (457)
64 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.3E-29 209.9 13.7 220 179-428 12-238 (276)
65 1p9a_G Platelet glycoprotein I 99.9 4E-24 1.4E-28 208.0 16.8 110 318-427 99-208 (290)
66 1jl5_A Outer protein YOPM; leu 99.9 7E-25 2.4E-29 226.7 10.5 232 174-431 11-274 (454)
67 2z62_A TOLL-like receptor 4, v 99.9 1.3E-23 4.4E-28 202.8 16.4 208 172-406 26-239 (276)
68 4glp_A Monocyte differentiatio 99.9 1.2E-24 4E-29 213.8 8.2 204 201-428 91-308 (310)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-24 7.1E-29 230.4 10.1 221 174-428 61-298 (622)
70 2o6q_A Variable lymphocyte rec 99.9 6.1E-23 2.1E-27 197.5 19.0 199 202-451 17-222 (270)
71 1jl5_A Outer protein YOPM; leu 99.9 3.7E-23 1.3E-27 213.8 17.0 226 174-430 131-373 (454)
72 3goz_A Leucine-rich repeat-con 99.9 6E-25 2.1E-29 220.7 0.8 249 178-429 2-299 (362)
73 2ca6_A RAN GTPase-activating p 99.9 3E-25 1E-29 224.8 -1.7 238 193-430 24-319 (386)
74 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.5E-28 200.5 10.8 204 197-433 37-242 (272)
75 3m19_A Variable lymphocyte rec 99.9 4.6E-23 1.6E-27 196.1 12.5 190 157-406 4-194 (251)
76 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.3E-27 197.4 15.8 199 174-405 10-209 (290)
77 3rfs_A Internalin B, repeat mo 99.9 4.1E-23 1.4E-27 199.0 12.0 204 173-413 40-245 (272)
78 1h6u_A Internalin H; cell adhe 99.9 1.2E-22 4E-27 199.3 14.8 192 173-406 40-232 (308)
79 2ast_B S-phase kinase-associat 99.9 8.1E-25 2.8E-29 217.1 -3.2 260 155-430 34-309 (336)
80 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.2E-27 199.4 10.4 203 174-405 91-308 (310)
81 2xwt_C Thyrotropin receptor; s 99.9 2E-22 7E-27 190.1 11.0 195 202-424 32-236 (239)
82 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6E-26 191.0 16.4 200 197-433 37-236 (308)
83 2ca6_A RAN GTPase-activating p 99.9 5.6E-24 1.9E-28 215.4 -1.9 232 173-407 31-319 (386)
84 3goz_A Leucine-rich repeat-con 99.9 8.6E-23 2.9E-27 205.0 4.3 231 173-406 21-299 (362)
85 1z7x_W Ribonuclease inhibitor; 99.9 3.3E-24 1.1E-28 222.0 -6.5 254 175-428 86-412 (461)
86 3m19_A Variable lymphocyte rec 99.9 3.6E-21 1.2E-25 183.0 14.3 179 226-430 15-195 (251)
87 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5E-26 184.2 10.9 199 172-402 29-237 (239)
88 1z7x_W Ribonuclease inhibitor; 99.8 1E-23 3.5E-28 218.3 -6.1 257 173-429 27-328 (461)
89 2ast_B S-phase kinase-associat 99.8 2.5E-22 8.6E-27 199.1 1.6 228 174-408 70-310 (336)
90 3g06_A SSPH2 (leucine-rich rep 99.8 7.1E-20 2.4E-24 195.4 18.8 248 148-433 12-280 (622)
91 2o6s_A Variable lymphocyte rec 99.8 4.9E-20 1.7E-24 169.9 14.8 176 159-344 8-190 (208)
92 3cvr_A Invasion plasmid antige 99.8 1.5E-20 5.3E-25 198.3 12.1 189 159-406 49-245 (571)
93 4ay9_X Follicle-stimulating ho 99.8 1.6E-20 5.5E-25 187.5 11.3 234 159-424 10-256 (350)
94 3cvr_A Invasion plasmid antige 99.8 3.5E-20 1.2E-24 195.6 14.3 178 202-428 60-244 (571)
95 4ay9_X Follicle-stimulating ho 99.8 2.2E-20 7.5E-25 186.5 12.0 199 171-400 51-255 (350)
96 1h6t_A Internalin B; cell adhe 99.8 8.9E-20 3E-24 177.3 13.3 174 197-430 42-216 (291)
97 2o6s_A Variable lymphocyte rec 99.8 9E-20 3.1E-24 168.1 9.4 190 176-405 9-199 (208)
98 1m9s_A Internalin B; cell inva 99.8 2E-19 7E-24 191.6 9.2 191 174-406 21-212 (605)
99 4b8c_D Glucose-repressible alc 99.8 3.1E-20 1.1E-24 202.5 0.7 258 126-427 130-404 (727)
100 1m9s_A Internalin B; cell inva 99.8 9.4E-19 3.2E-23 186.4 11.2 169 174-381 43-211 (605)
101 1dce_A Protein (RAB geranylger 99.8 6.4E-22 2.2E-26 209.6 -13.3 190 222-434 346-553 (567)
102 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.9E-23 168.2 11.8 171 173-406 45-215 (291)
103 3e6j_A Variable lymphocyte rec 99.8 4.6E-18 1.6E-22 159.2 14.2 156 149-309 11-173 (229)
104 1xeu_A Internalin C; cellular 99.7 3.8E-18 1.3E-22 163.3 10.2 169 174-406 19-187 (263)
105 2xot_A Amphoterin-induced prot 99.7 1.6E-18 5.5E-23 173.7 7.6 174 228-427 21-202 (361)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 4.5E-18 1.5E-22 158.3 9.5 153 252-428 14-167 (220)
107 2v9t_B SLIT homolog 2 protein 99.7 5.6E-18 1.9E-22 157.6 9.8 152 252-428 14-166 (220)
108 2xot_A Amphoterin-induced prot 99.7 4.3E-18 1.5E-22 170.6 9.6 175 177-380 21-202 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 6.1E-18 2.1E-22 157.4 9.8 153 228-406 14-168 (220)
110 4ezg_A Putative uncharacterize 99.7 5.4E-18 1.8E-22 154.9 9.2 154 222-428 41-195 (197)
111 2v9t_B SLIT homolog 2 protein 99.7 6.5E-18 2.2E-22 157.2 9.6 152 228-405 14-166 (220)
112 3e6j_A Variable lymphocyte rec 99.7 2.8E-17 9.7E-22 153.8 13.3 154 176-383 21-175 (229)
113 1xeu_A Internalin C; cellular 99.7 3E-18 1E-22 164.0 5.6 173 199-432 17-190 (263)
114 3ogk_B Coronatine-insensitive 99.7 4.2E-19 1.4E-23 189.4 -2.8 254 174-429 192-528 (592)
115 3ogk_B Coronatine-insensitive 99.7 4.2E-19 1.5E-23 189.4 -3.8 254 173-427 163-501 (592)
116 4ezg_A Putative uncharacterize 99.7 3.4E-17 1.2E-21 149.5 8.0 154 197-405 40-195 (197)
117 4b8c_D Glucose-repressible alc 99.7 5.8E-17 2E-21 176.7 10.6 196 175-380 192-404 (727)
118 1dce_A Protein (RAB geranylger 99.7 3.4E-18 1.2E-22 181.0 0.1 169 246-435 346-531 (567)
119 2ell_A Acidic leucine-rich nuc 99.6 1.4E-16 4.7E-21 141.5 7.5 121 310-432 40-165 (168)
120 1w8a_A SLIT protein; signaling 99.6 1.8E-16 6.2E-21 144.1 5.5 84 321-404 56-139 (192)
121 3sb4_A Hypothetical leucine ri 99.6 4.8E-16 1.6E-20 153.6 5.8 247 174-431 25-314 (329)
122 1w8a_A SLIT protein; signaling 99.6 5.7E-15 1.9E-19 134.1 12.4 129 177-311 11-142 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.6E-20 135.7 6.5 137 248-409 23-165 (168)
124 2wfh_A SLIT homolog 2 protein 99.6 2.7E-15 9.3E-20 136.4 8.5 125 300-428 15-140 (193)
125 2wfh_A SLIT homolog 2 protein 99.6 7.3E-15 2.5E-19 133.5 10.1 94 312-405 47-140 (193)
126 2p1m_B Transport inhibitor res 99.6 5.7E-17 2E-21 172.9 -5.1 127 299-426 376-518 (594)
127 2o6r_A Variable lymphocyte rec 99.6 2.3E-14 7.9E-19 128.2 12.3 124 159-285 8-137 (177)
128 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.4E-20 133.0 3.2 106 315-422 38-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 9.9E-15 3.4E-19 130.6 9.8 112 319-430 28-140 (177)
130 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.7E-19 126.4 6.8 107 174-285 17-126 (149)
131 2p1m_B Transport inhibitor res 99.5 5E-16 1.7E-20 165.6 -2.6 84 174-260 105-195 (594)
132 1ds9_A Outer arm dynein; leuci 99.5 3.4E-16 1.2E-20 143.0 -6.0 86 197-285 14-106 (198)
133 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.1E-19 130.0 3.2 90 338-428 59-154 (176)
134 3sb4_A Hypothetical leucine ri 99.5 8.8E-15 3E-19 144.5 2.4 242 173-421 48-328 (329)
135 1ds9_A Outer arm dynein; leuci 99.5 5.5E-16 1.9E-20 141.5 -6.9 63 221-285 14-83 (198)
136 3g39_A Variable lymphocyte rec 99.4 2.4E-13 8.1E-18 120.9 9.3 108 321-431 11-119 (170)
137 2r9u_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 120.2 10.2 108 322-432 15-123 (174)
138 1a9n_A U2A', U2A'; complex (nu 99.4 2.5E-13 8.7E-18 121.3 8.1 104 174-285 19-126 (176)
139 4fdw_A Leucine rich hypothetic 99.4 1.3E-12 4.3E-17 132.4 14.0 226 195-431 130-362 (401)
140 3g39_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 115.1 11.1 106 176-287 11-117 (170)
141 4fdw_A Leucine rich hypothetic 99.4 2.2E-12 7.6E-17 130.6 12.7 241 174-428 135-384 (401)
142 2r9u_A Variable lymphocyte rec 99.3 3.6E-12 1.2E-16 113.7 10.9 105 176-286 14-119 (174)
143 2ifg_A High affinity nerve gro 99.2 1.2E-11 4E-16 122.8 9.1 102 325-428 14-117 (347)
144 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.3E-16 120.9 10.6 103 179-286 13-117 (347)
145 3un9_A NLR family member X1; l 99.2 1.1E-13 3.9E-18 138.7 -7.8 68 339-406 179-254 (372)
146 3un9_A NLR family member X1; l 99.2 5.2E-13 1.8E-17 133.9 -4.2 159 248-428 71-253 (372)
147 2ra8_A Uncharacterized protein 98.7 6.4E-10 2.2E-14 110.7 -1.6 83 341-425 250-341 (362)
148 4fs7_A Uncharacterized protein 98.7 4.8E-08 1.6E-12 98.5 9.9 219 195-424 156-376 (394)
149 2ra8_A Uncharacterized protein 98.6 4.4E-09 1.5E-13 104.6 1.2 181 201-428 107-321 (362)
150 4fs7_A Uncharacterized protein 98.6 2.8E-07 9.6E-12 92.8 13.7 56 174-234 71-126 (394)
151 4gt6_A Cell surface protein; l 98.6 1.8E-07 6.1E-12 94.3 12.0 85 337-424 282-367 (394)
152 4gt6_A Cell surface protein; l 98.5 2.6E-07 8.9E-12 93.0 10.6 108 314-426 283-390 (394)
153 1io0_A Tropomodulin; LRR prote 98.4 9.1E-09 3.1E-13 92.3 -2.7 114 314-427 31-164 (185)
154 3rw6_A Nuclear RNA export fact 98.4 4.7E-08 1.6E-12 92.5 1.1 79 340-420 167-257 (267)
155 1io0_A Tropomodulin; LRR prote 98.4 7.3E-08 2.5E-12 86.4 1.0 112 174-285 36-164 (185)
156 4h09_A Hypothetical leucine ri 98.2 1.4E-05 4.8E-10 79.7 14.4 93 336-431 233-326 (379)
157 3rw6_A Nuclear RNA export fact 98.2 1.3E-07 4.4E-12 89.5 -1.6 106 323-430 120-237 (267)
158 3e4g_A ATP synthase subunit S, 98.0 2.9E-06 1E-10 74.6 3.9 86 343-428 61-154 (176)
159 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7E-11 75.6 1.8 84 174-260 61-150 (176)
160 4h09_A Hypothetical leucine ri 97.9 0.0001 3.6E-09 73.3 14.3 125 337-464 211-337 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 4.7E-05 1.6E-09 68.2 0.1 85 175-259 42-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00038 1.3E-08 62.2 3.3 62 339-400 66-135 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0035 1.2E-07 52.1 6.4 55 347-403 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0047 1.6E-07 51.3 6.8 35 227-261 33-67 (130)
165 2lz0_A Uncharacterized protein 45.8 27 0.00093 26.7 4.7 47 212-259 7-53 (100)
166 2lz0_A Uncharacterized protein 35.6 52 0.0018 25.1 4.8 38 362-400 15-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.7e-40 Score=322.85 Aligned_cols=296 Identities=25% Similarity=0.420 Sum_probs=256.9
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCC--CCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcC
Q 011101 127 QLAFKVIQRFKKRITYDPQGIANTWM-GPDVCNK--YKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDL 203 (493)
Q Consensus 127 ~~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~--w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L 203 (493)
..+.+++.+||+++. |+. .+.+|. +.++| . |.||.|+... ...+|+.|+|++|++++. ..++..+..+++|
T Consensus 5 ~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C-~~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L 78 (313)
T 1ogq_A 5 PQDKQALLQIKKDLG-NPT-TLSSWLPTTDCC-NRTWLGVLCDTDT--QTYRVNNLDLSGLNLPKP-YPIPSSLANLPYL 78 (313)
T ss_dssp HHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTT-TTCSTTEEECCSS--SCCCEEEEEEECCCCSSC-EECCGGGGGCTTC
T ss_pred HHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCC-cCCCcceEeCCCC--CCceEEEEECCCCCccCC-cccChhHhCCCCC
Confidence 457789999999994 555 688998 55677 7 9999997532 125899999999999851 1268899999999
Q ss_pred cEEEccC-CcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccC
Q 011101 204 AIFHANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNN 281 (493)
Q Consensus 204 ~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~ 281 (493)
++|++++ |++++.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..+... +|++|+|++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 9999995 99999999999999999999999999998999999999999999999999999999888776 999999999
Q ss_pred ccCCCCccccccccc-cc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCC
Q 011101 282 NKFSQNLPENIGSTG-AL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359 (493)
Q Consensus 282 n~l~~~~p~~~~~~~-~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 359 (493)
|.+.+.+|..++.+. .+ +|++++|.+.+.+|..+..+. |++|++++|.+++..+..|..+++|++|+|++|.+++.+
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 999989999998886 65 899999999988899888887 999999999999888888899999999999999998665
Q ss_pred cccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCc-CCCCC
Q 011101 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC-ILDLP 430 (493)
Q Consensus 360 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~-l~~lp 430 (493)
+. +..+++|++|+|++|+|++.+|..+..+++|+.|+|++|+|++..+....+++|+.|++++|. +.+.|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 55 778889999999999998888988999999999999999999766666888888989888886 55543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.9e-37 Score=329.28 Aligned_cols=297 Identities=16% Similarity=0.244 Sum_probs=222.8
Q ss_pred hhHHHHHHHHHHHHhhhcccCCCCCCC-------CCC-CCCCCCCC---CceeeccCCCCCccceEEEEcCCCCcCCCCC
Q 011101 123 SERIQLAFKVIQRFKKRITYDPQGIAN-------TWM-GPDVCNKY---KGFVCDVRPDIKKKAVAGVDFNGYRFNGPDF 191 (493)
Q Consensus 123 s~~~~~~~~~L~~~k~~~~~d~~~~~~-------~W~-~~~~C~~w---~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~ 191 (493)
.+...+++.|+.+++.++..+.|.... +|. +.++| .| .||.|+.. .+|+.|+|+++++.|
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c-~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g--- 95 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD-MWGAQPGVSLNSN-----GRVTGLSLEGFGASG--- 95 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG-GTTCCTTEEECTT-----CCEEEEECTTSCCEE---
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc-cccCCCCeEEcCC-----CCEEEEEecCcccCC---
Confidence 456677999999999998777665433 898 56677 99 99999753 689999999999999
Q ss_pred ccchhhhCCCcCcEEEccCCcC----------------------------------------------------------
Q 011101 192 SLSDFLEKLEDLAIFHANSNNF---------------------------------------------------------- 213 (493)
Q Consensus 192 ~~~~~l~~l~~L~~L~L~~n~i---------------------------------------------------------- 213 (493)
.+|..+++|++|++|+|++|++
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 8999999999999999988843
Q ss_pred --------------------CCccCcccCCCCCCCEEECcCCCCCCC-----------------Cccccc--CCCCCcEE
Q 011101 214 --------------------TKSIPKMTSKLKFLYELDVSNNKLFGG-----------------FPMEVV--NIKNLTFL 254 (493)
Q Consensus 214 --------------------~~~~p~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L 254 (493)
++ +|..|+++++|++|+|++|.+++. +|..+. ++++|++|
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 34 778889999999999999999875 888888 99999999
Q ss_pred EcccccCCCCCCcccccc-ccCEEEccCcc-CCC-Ccccccccc------ccc-hhhcccCcCCCCCch--hhhhhhhhH
Q 011101 255 DLRFNSFSGPVPAEIFYL-DLDVLFLNNNK-FSQ-NLPENIGST------GAL-YVTFANNEFTGPIPS--SIGRAKYLL 322 (493)
Q Consensus 255 ~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~-l~~-~~p~~~~~~------~~l-~L~l~~n~l~~~~p~--~l~~l~~L~ 322 (493)
+|++|.+.+.+|..+... +|++|+|++|+ +++ .+|..++.+ ..+ +|++++|.++ .+|. .++++++|+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 999999998999888776 89999999998 887 788777765 555 7888888877 7777 777777777
Q ss_pred HHHhccccccCCCcccccCCC-----------------------C-CcEEEecCCCCCCCCcccccCCC--CCCEEEccc
Q 011101 323 EVLFLNNFFTGCLPYEIGFLS-----------------------N-STVFDVGNNRLTGPIPHSFGCLS--SMQYLNLAM 376 (493)
Q Consensus 323 ~L~L~~n~l~~~~p~~l~~l~-----------------------~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~ 376 (493)
+|++++|.+.|.+| .|..++ + |++|++++|.++ .+|..+..+. +|++|++++
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 77777777776665 544444 4 555555555555 4554444433 555555666
Q ss_pred CCCCCCcchhhc-------CCCCCcEEeeeCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCCCC
Q 011101 377 NQFYGPVPEIVC-------QLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 377 N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
|++++.+|..+. .+.+|++|+|++|+|++++.. +..+++|++|+|++|.|+.+|..
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 655555555555 555666777777776666553 34567777777777777777654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.9e-36 Score=328.81 Aligned_cols=295 Identities=24% Similarity=0.361 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCc---cc-----
Q 011101 124 ERIQLAFKVIQRFKKRITYDPQGIANTWM-GPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFS---LS----- 194 (493)
Q Consensus 124 ~~~~~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~---~~----- 194 (493)
.....+++|+.+||+++. |+. .+++|. +.++| .|.||.|+. .+|+.|||+++.+.+ . ++
T Consensus 8 ~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C-~w~gv~C~~------~~v~~L~L~~~~l~g---~~~~l~~~l~~ 75 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPC-TFDGVTCRD------DKVTSIDLSSKPLNV---GFSAVSSSLLS 75 (768)
T ss_dssp CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGG-GSTTEEEET------TEEEEEECTTSCCCE---EHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCc-CCcceEECC------CcEEEEECCCCCcCC---ccCccChhHhc
Confidence 336678899999999996 777 899997 66777 999999971 467777777777665 3 22
Q ss_pred ------------------hhhhCCCcCcEEEccCCcCCCccCc--ccCCCCCCCEEECcCCCCCCCCcccc-cCCCCCcE
Q 011101 195 ------------------DFLEKLEDLAIFHANSNNFTKSIPK--MTSKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTF 253 (493)
Q Consensus 195 ------------------~~l~~l~~L~~L~L~~n~i~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~ 253 (493)
..++.+++|++|+|++|.+++.+|. .++++++|++|+|++|.+++..+..+ .++++|++
T Consensus 76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 3566667777777777777776666 67777777777777777666555544 55666666
Q ss_pred EEcccccCCCCCCcc--------------------------ccccccCEEEccCccCCCCccccccccccc-hhhcccCc
Q 011101 254 LDLRFNSFSGPVPAE--------------------------IFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE 306 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~--------------------------~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~ 306 (493)
|+|++|.+++..+.. ....+|++|+|++|.+.+.++. ++.+..+ +|++++|.
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence 666666655443332 1122677777777777766665 7777766 78888888
Q ss_pred CCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCC-CCCCEEEcccCCCCCCcch
Q 011101 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL-SSMQYLNLAMNQFYGPVPE 385 (493)
Q Consensus 307 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~ 385 (493)
+.+.++..+..+++|++|++++|.+.+.++.. .+++|++|+|++|.+++.+|..+..+ ++|++|+|++|++++.+|.
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 87777777888888888888888777666554 67777777777777777777777664 7888888888888877888
Q ss_pred hhcCCCCCcEEeeeCCcCCC-CCcc-ccCCCCCCEEEeeCCcCC-CCCCCC
Q 011101 386 IVCQLPKLVNLSLSYNYFTQ-VGPE-CRKLIKRKVLDVRMNCIL-DLPNQR 433 (493)
Q Consensus 386 ~l~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~L~~N~l~-~lp~~~ 433 (493)
.+..+++|++|+|++|++++ ++.. +..+++|++|++++|.++ .+|..+
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 88888888888888888874 4443 777888888888888877 566543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.6e-35 Score=321.47 Aligned_cols=284 Identities=26% Similarity=0.421 Sum_probs=242.7
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|++++|.+++ .+|..+..+++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..+..+++|+
T Consensus 393 ~~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TCCCCEEECCSSEEEE---ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCccEEECCCCcccc---ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 4568888888888887 6788888888888888888888888888888888888888888888888888888888888
Q ss_pred EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF 330 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 330 (493)
+|+|++|.+++.+|..+... +|++|+|++|++.+.+|..++.+..+ +|++++|.+.+.+|..++.+++|+.|++++|.
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 88888888888888877766 88888888888888888888888877 88888888888888888888888888888888
Q ss_pred ccCCCccc----------------------------------------------------------------------cc
Q 011101 331 FTGCLPYE----------------------------------------------------------------------IG 340 (493)
Q Consensus 331 l~~~~p~~----------------------------------------------------------------------l~ 340 (493)
++|.+|.. +.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 87766643 33
Q ss_pred CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEE
Q 011101 341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVL 419 (493)
Q Consensus 341 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L 419 (493)
.+.+|++|||++|+++|.+|..|+.+++|++|+|++|+++|.+|..++.+++|+.|||++|++++. +..+..+++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 457899999999999999999999999999999999999999999999999999999999999985 5588999999999
Q ss_pred EeeCCcCCC-CCC--CCCchhhcccccCCCCCCCCCCCcccCCCCCC
Q 011101 420 DVRMNCILD-LPN--QRSREECGKFFSESKKCPNERSLTLVPCARNR 463 (493)
Q Consensus 420 ~L~~N~l~~-lp~--~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~~~ 463 (493)
+|++|++++ +|. ++..+....+.+|+..|... +..|....
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~ 752 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN 752 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence 999999986 664 34555667789999999754 22786443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.4e-35 Score=320.64 Aligned_cols=290 Identities=18% Similarity=0.248 Sum_probs=231.4
Q ss_pred hhHHHHHHHHHHHHhhhcccCCCCCCCCCCC------CCC--CCCC------------CceeeccCCCCCccceEEEEcC
Q 011101 123 SERIQLAFKVIQRFKKRITYDPQGIANTWMG------PDV--CNKY------------KGFVCDVRPDIKKKAVAGVDFN 182 (493)
Q Consensus 123 s~~~~~~~~~L~~~k~~~~~d~~~~~~~W~~------~~~--C~~w------------~gv~c~~~~~~~~~~l~~L~L~ 182 (493)
.+....++.||.+||+++.+. +|.. .++ | .| .||.|+.. .+|+.|+|+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls 331 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLA 331 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECTT-----SCEEEEECT
T ss_pred cccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCcc-ccccccccccccCcCceEecCC-----CCEEEEECc
Confidence 345677899999999999533 5652 345 6 99 99999852 689999999
Q ss_pred CCCcCCCCCccchhhhCCCcCcEEEc-cCCcCCCc---------------------------------------------
Q 011101 183 GYRFNGPDFSLSDFLEKLEDLAIFHA-NSNNFTKS--------------------------------------------- 216 (493)
Q Consensus 183 ~n~l~~~~~~~~~~l~~l~~L~~L~L-~~n~i~~~--------------------------------------------- 216 (493)
++++.| .+|..+++|++|++|+| ++|.++|.
T Consensus 332 ~~~L~G---~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 332 GFGAKG---RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp TTCCEE---EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred cCCCCC---cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 999999 89999999999999999 76654333
Q ss_pred -------------------------------cCcccCCCCCCCEEECcCCCCCC-----------------CCccccc--
Q 011101 217 -------------------------------IPKMTSKLKFLYELDVSNNKLFG-----------------GFPMEVV-- 246 (493)
Q Consensus 217 -------------------------------~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~-- 246 (493)
+|..|+++++|++|+|++|.|++ .+|..++
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 78889999999999999999987 3888877
Q ss_pred CCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCcc-CCC-Cccccccccc-------cc-hhhcccCcCCCCCch--
Q 011101 247 NIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNK-FSQ-NLPENIGSTG-------AL-YVTFANNEFTGPIPS-- 313 (493)
Q Consensus 247 ~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~-l~~-~~p~~~~~~~-------~l-~L~l~~n~l~~~~p~-- 313 (493)
++++|++|+|++|.+.+.+|..+... +|++|+|++|+ +++ .+|..++.+. .+ +|++++|.+. .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 99999999999999999999888877 99999999998 888 7888887775 55 8999999998 8888
Q ss_pred hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCC-CCEEEcccCCCCCCcchhhcCCCC
Q 011101 314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSS-MQYLNLAMNQFYGPVPEIVCQLPK 392 (493)
Q Consensus 314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~ 392 (493)
.++++++|++|+|++|.++ .+| .|..+++|+.|+|++|.++ .+|..+..+++ |++|+|++|+++ .+|..+..+..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 8999999999999999988 777 7888888888888888888 78877888887 888888888887 56665554432
Q ss_pred --CcEEeeeCCcCCC-----------------------------CCccc-cCCCCCCEEEeeCCcCCCCCCC
Q 011101 393 --LVNLSLSYNYFTQ-----------------------------VGPEC-RKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 393 --L~~L~Ls~N~l~~-----------------------------~~~~~-~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
|+.|+|++|+|++ ++..+ ..+++|+.|+|++|.|+.+|..
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 5555555555544 33322 2456666666666666666543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.3e-34 Score=281.13 Aligned_cols=275 Identities=16% Similarity=0.204 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCC-----CCCCCCCCCceeeccCC----CCCccceEEEEcCCCCcCCCCCccch
Q 011101 125 RIQLAFKVIQRFKKRITYDPQGIANTWM-----GPDVCNKYKGFVCDVRP----DIKKKAVAGVDFNGYRFNGPDFSLSD 195 (493)
Q Consensus 125 ~~~~~~~~L~~~k~~~~~d~~~~~~~W~-----~~~~C~~w~gv~c~~~~----~~~~~~l~~L~L~~n~l~~~~~~~~~ 195 (493)
....++.++..|+..+..|+.+....|. ..++| .|.|+.|+... .....+++.|+|++|+++. +|.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~----lp~ 98 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLPQ----FPD 98 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS----CCS
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhccccccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCchh----cCh
Confidence 3445678999999999888887788893 45677 99999996321 1223679999999999986 788
Q ss_pred hhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccc----
Q 011101 196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY---- 271 (493)
Q Consensus 196 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---- 271 (493)
.+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|.++++|++|+|++|.+.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 8888999999999999999 78888999999999999999997 78889999999999999999988888887653
Q ss_pred ------cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCC
Q 011101 272 ------LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNS 345 (493)
Q Consensus 272 ------~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 345 (493)
.+|++|+|++|.+. .+|..++.+++|++|++++|.+++ ++..+..+++|
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~------------------------~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR------------------------SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC------------------------CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred hhhccCCCCCEEECcCCCcC------------------------cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 25555555555544 455666777777777788877774 55567788888
Q ss_pred cEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC-CCccccCCCCCCEEEeeCC
Q 011101 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ-VGPECRKLIKRKVLDVRMN 424 (493)
Q Consensus 346 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L~~N 424 (493)
++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+ ++..+..+++|+.+++..|
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 888888888887888888888888888888888887888888888888888888877666 4557788888888888888
Q ss_pred cCCCCCC
Q 011101 425 CILDLPN 431 (493)
Q Consensus 425 ~l~~lp~ 431 (493)
.+..+..
T Consensus 312 ~~~~l~~ 318 (328)
T 4fcg_A 312 LQAQLDQ 318 (328)
T ss_dssp GSCC---
T ss_pred HHHHHhh
Confidence 7776653
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.1e-33 Score=286.05 Aligned_cols=276 Identities=17% Similarity=0.151 Sum_probs=204.7
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCcc-CcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSI-PKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
..+++.|+|++|.+++ ..+..+.++++|++|++++|.+.+.+ +..|.++++|++|+|++|.+++..+..|.++++|
T Consensus 29 ~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 3568888888888877 55667777777888888777776544 4557777777777777777776667777777777
Q ss_pred cEEEcccccCCCCCCcc--cccc-ccCEEEccCccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhhh--------
Q 011101 252 TFLDLRFNSFSGPVPAE--IFYL-DLDVLFLNNNKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGRA-------- 318 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~--~~~~-~L~~L~L~~n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~l-------- 318 (493)
++|+|++|.+++.++.. +... +|++|+|++|.+.+..+.. +..+..+ +|++++|.+.+..+..+..+
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 77777777776544332 3333 6677777777766655544 5555555 66666666655444433332
Q ss_pred --------------------------------------------------------------------------------
Q 011101 319 -------------------------------------------------------------------------------- 318 (493)
Q Consensus 319 -------------------------------------------------------------------------------- 318 (493)
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence
Q ss_pred ---------hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcC
Q 011101 319 ---------KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ 389 (493)
Q Consensus 319 ---------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 389 (493)
.+|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 23444555555555556777888999999999999999888889999999999999999998877888999
Q ss_pred CCCCcEEeeeCCcCCCCC-ccccCCCCCCEEEeeCCcCCCCCCC----CCchhhcccccCCCCCCCC
Q 011101 390 LPKLVNLSLSYNYFTQVG-PECRKLIKRKVLDVRMNCILDLPNQ----RSREECGKFFSESKKCPNE 451 (493)
Q Consensus 390 l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~~~~~c~~~ 451 (493)
+++|++|+|++|+|+++. ..+..+++|++|++++|+|+++|.. ...++.+.+.+|+..|.+.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999974 4788999999999999999998864 2345667788888888754
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=277.84 Aligned_cols=290 Identities=18% Similarity=0.148 Sum_probs=231.4
Q ss_pred CCCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101 159 KYKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS 233 (493)
Q Consensus 159 ~w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 233 (493)
.|..|.|... +.....+++.|+|++|++++ ..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 3566777632 23345689999999999998 667789999999999999999998888899999999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCC
Q 011101 234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI 311 (493)
Q Consensus 234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~ 311 (493)
+|.+++..+..|.++++|++|+|++|.+.+..+..+... +|++|+|++|.+.+..+..+..+..+ +|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 999987666678899999999999999987767666655 89999999999988777788888877 8899999888776
Q ss_pred chhhhhhhhhHHHHhccccccCCCcccccCCCC------------------------CcEEEecCCCCCCCCcccccCCC
Q 011101 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSN------------------------STVFDVGNNRLTGPIPHSFGCLS 367 (493)
Q Consensus 312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~------------------------L~~L~Ls~N~l~~~~p~~l~~l~ 367 (493)
+..+..+++|+.|++++|.+.+..+..|..+.+ |++|+|++|.+++.....|..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 677888888888888888877655555555554 45555555666633334677788
Q ss_pred CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC----CCchhhcccc
Q 011101 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ----RSREECGKFF 442 (493)
Q Consensus 368 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~ 442 (493)
+|++|+|++|.+++..+..+..+++|+.|+|++|+|+++.+ .+..+++|+.|+|++|.|++++.. ...++.+.+.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 88888888888887666778888889999999999888744 788899999999999999998854 2345567788
Q ss_pred cCCCCCCCC
Q 011101 443 SESKKCPNE 451 (493)
Q Consensus 443 ~~~~~c~~~ 451 (493)
+|++.|.+.
T Consensus 329 ~N~l~c~c~ 337 (477)
T 2id5_A 329 SNPLACDCR 337 (477)
T ss_dssp SSCEECSGG
T ss_pred CCCccCccc
Confidence 888888743
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.3e-32 Score=265.00 Aligned_cols=248 Identities=24% Similarity=0.335 Sum_probs=226.0
Q ss_pred CcCcEEEccCCcCCC--ccCcccCCCCCCCEEECcC-CCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCE
Q 011101 201 EDLAIFHANSNNFTK--SIPKMTSKLKFLYELDVSN-NKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDV 276 (493)
Q Consensus 201 ~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~ 276 (493)
.+++.|++++|.+++ .+|..|.++++|++|+|++ |.+++.+|..|.++++|++|+|++|.+++.+|..+... +|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999999 8999999999999999995 99999999999999999999999999998999888776 9999
Q ss_pred EEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhh-hhHHHHhccccccCCCcccccCCCCCcEEEecCCC
Q 011101 277 LFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAK-YLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR 354 (493)
Q Consensus 277 L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 354 (493)
|+|++|.+.+.+|..+..+..+ +|++++|.+++.+|..+..+. +|++|++++|.+++.++..+..+. |++|+|++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999999999999999888 999999999999999999998 999999999999999999999987 9999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC-CCccccCCCCCCEEEeeCCcCC-CCCCC
Q 011101 355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ-VGPECRKLIKRKVLDVRMNCIL-DLPNQ 432 (493)
Q Consensus 355 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 432 (493)
+++..+..|..+++|++|+|++|++++.++. +..+++|++|+|++|+|++ ++..+..+++|++|+|++|.|+ .+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999976665 7889999999999999996 4557899999999999999998 46654
Q ss_pred --CCchhhcccccCCCCCCC
Q 011101 433 --RSREECGKFFSESKKCPN 450 (493)
Q Consensus 433 --~~~~~~~~~~~~~~~c~~ 450 (493)
...+....+.+|+..|..
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 334555667788877753
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.8e-31 Score=267.86 Aligned_cols=271 Identities=18% Similarity=0.137 Sum_probs=201.1
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
...+++.|+++++.++. .....+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 34778899999999887 334457889999999999999987777789999999999999999988878888999999
Q ss_pred cEEEcccccCCCCCCccc-ccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhh----------
Q 011101 252 TFLDLRFNSFSGPVPAEI-FYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRA---------- 318 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~-~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l---------- 318 (493)
++|+|++|.++ .++..+ ... +|++|++++|.+.+..+..+..+..+ +|++++|.+++.-...+.++
T Consensus 120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence 99999999998 566554 433 89999999999987777778888777 88888888875422222211
Q ss_pred ---------------------------hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCE
Q 011101 319 ---------------------------KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371 (493)
Q Consensus 319 ---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 371 (493)
.+|++|++++|.+++. ..+..+++|++|+|++|.+++..+..|..+++|++
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 1244444444444432 34666777888888888877666777777788888
Q ss_pred EEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC-CCCchhhcccccCCCCCC
Q 011101 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN-QRSREECGKFFSESKKCP 449 (493)
Q Consensus 372 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~~~~~c~ 449 (493)
|+|++|++++ ++..+..+++|++|+|++|++++++..+..+++|+.|++++|.|+.++- ....+..+.+.+|++.|.
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 8888887773 4555666778888888888888777677777888888888888877752 233444556666666665
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.9e-31 Score=273.78 Aligned_cols=256 Identities=15% Similarity=0.149 Sum_probs=214.6
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcc--cCCCCCCCEEECcCCCCCCCCccc-ccCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKM--TSKLKFLYELDVSNNKLFGGFPME-VVNI 248 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l 248 (493)
...+++.|+|++|.+++ ..+..++.+++|++|++++|++++.++.. |.++++|++|+|++|.+++..+.. +.++
T Consensus 77 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQ---LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TCTTCCEEECTTCTTCE---ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred ccccCCEEeCCCCccCc---cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 45678888888888887 66778888888888888888888755444 888888888888888888776765 7888
Q ss_pred CCCcEEEcccccCCCCCCccccc-----------------------------------cccCEEEccCccCCCCcccccc
Q 011101 249 KNLTFLDLRFNSFSGPVPAEIFY-----------------------------------LDLDVLFLNNNKFSQNLPENIG 293 (493)
Q Consensus 249 ~~L~~L~Ls~n~l~~~~p~~~~~-----------------------------------~~L~~L~L~~n~l~~~~p~~~~ 293 (493)
++|++|+|++|.+.+..+..+.. .+|++|++++|.+.+..+..+.
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 88888888888888766654432 2577888888877655444332
Q ss_pred cc---------------------------------------ccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101 294 ST---------------------------------------GAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 294 ~~---------------------------------------~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
.. ..+ +|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 21 233 78888899888889999999999999999999998
Q ss_pred CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccC
Q 011101 334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRK 412 (493)
Q Consensus 334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~ 412 (493)
..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+|++++. .+..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 888899999999999999999998888999999999999999999998889999999999999999999999876 4689
Q ss_pred CCCCCEEEeeCCcCCCCC
Q 011101 413 LIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 413 l~~L~~L~L~~N~l~~lp 430 (493)
+++|+.|++++|.|+.-.
T Consensus 394 l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CTTCCEEECCSSCBCCCT
T ss_pred CCcccEEEccCCCcccCC
Confidence 999999999999998743
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=8.2e-31 Score=280.85 Aligned_cols=298 Identities=18% Similarity=0.143 Sum_probs=217.2
Q ss_pred CCCCCCCCCCCCCC-C---CCceeeccC------------CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEc
Q 011101 145 QGIANTWMGPDVCN-K---YKGFVCDVR------------PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHA 208 (493)
Q Consensus 145 ~~~~~~W~~~~~C~-~---w~gv~c~~~------------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L 208 (493)
+..++.|.....|+ . |.++.|+.. ......+++.++++++.+.. ..+..+..+++|++|+|
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNL 82 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE---ECTHHHHHCCCCSEEEC
T ss_pred cccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC---cCHHHHccCCCCcEEEC
Confidence 34467888555453 2 555544411 01234677888999988887 44455788899999999
Q ss_pred cCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc-cccc-ccCEEEccCccCCC
Q 011101 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE-IFYL-DLDVLFLNNNKFSQ 286 (493)
Q Consensus 209 ~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~ 286 (493)
++|.+++..+..|+.+++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+|.. +... +|++|+|++|.+.+
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence 999998877778889999999999999998877788888999999999999988 44444 3444 89999999999988
Q ss_pred Cccccccccccc-hhhcccCcCCCCCchhhhhh-------------------------------------hhhHHHHhcc
Q 011101 287 NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRA-------------------------------------KYLLEVLFLN 328 (493)
Q Consensus 287 ~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l-------------------------------------~~L~~L~L~~ 328 (493)
..+..++.+..+ +|++++|.+.+.....+.++ .+|+.|++++
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence 878788888877 88888888875432222221 1244445555
Q ss_pred ccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP 408 (493)
Q Consensus 329 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 408 (493)
|.+++ +..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++ ++..+..+++|+.|+|++|.|++++.
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~ 318 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER 318 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCc
Confidence 55553 2457778888888888888887778888888888888888888874 56666778888888888888888877
Q ss_pred cccCCCCCCEEEeeCCcCCCCCC-CCCchhhcccccCCCCCC
Q 011101 409 ECRKLIKRKVLDVRMNCILDLPN-QRSREECGKFFSESKKCP 449 (493)
Q Consensus 409 ~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~~~~~c~ 449 (493)
.+..+++|+.|+|++|.|++++- .+..+..+.+.+|++.|.
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred ccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 78888888888888888888752 234445556666666664
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-29 Score=252.03 Aligned_cols=247 Identities=18% Similarity=0.166 Sum_probs=191.4
Q ss_pred ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101 175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254 (493)
Q Consensus 175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 254 (493)
+++.+++++++++. +|..+. ++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|
T Consensus 32 ~l~~l~~~~~~l~~----lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK----VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS----CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc----cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 46677777777776 454332 577888888888887666678888888888888888877777788888888888
Q ss_pred EcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCC--CCchhhhhhhhhHHHHhccccc
Q 011101 255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG--PIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 255 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l 331 (493)
+|++|.++ .+|..+. .+|++|++++|.+.+..+..+..+..+ +|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 106 ~Ls~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp ECCSSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 88888887 5665554 578888888888877666667777777 78888887753 5667788888888888888888
Q ss_pred cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcccc
Q 011101 332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR 411 (493)
Q Consensus 332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 411 (493)
+. ++..+. ++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+|+.++..+.
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~ 260 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTT
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhc
Confidence 74 554443 788888888888887777788888888888888888887666678888888888888888888877788
Q ss_pred CCCCCCEEEeeCCcCCCCCCC
Q 011101 412 KLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 412 ~l~~L~~L~L~~N~l~~lp~~ 432 (493)
.+++|++|++++|.|++++..
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCcCEEECCCCcCCccChh
Confidence 888888888888888887653
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1e-29 Score=252.37 Aligned_cols=223 Identities=18% Similarity=0.200 Sum_probs=107.6
Q ss_pred cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccC
Q 011101 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNN 281 (493)
Q Consensus 202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~ 281 (493)
+|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+|..+. .+|++|++++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~~ 132 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIHD 132 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEECCS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEECCC
Confidence 4455555555554443444555555555555555554444444555555555555555544 3333333 3455555555
Q ss_pred ccCCCCccccccccccc-hhhcccCcCC--CCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC
Q 011101 282 NKFSQNLPENIGSTGAL-YVTFANNEFT--GPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358 (493)
Q Consensus 282 n~l~~~~p~~~~~~~~l-~L~l~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 358 (493)
|.+.+..+..+..+..+ +|++++|.+. +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+++.
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAI 208 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCC
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCcc
Confidence 55543333334444444 4555555443 1333444444 45555555555542 333222 4455555555555544
Q ss_pred CcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCC
Q 011101 359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 359 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp 430 (493)
.+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+|+.++..+..+++|+.|++++|.|++++
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccC
Confidence 444455555555555555555544444445555555555555555544444455555555555555555444
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.9e-30 Score=279.87 Aligned_cols=255 Identities=18% Similarity=0.236 Sum_probs=190.8
Q ss_pred CCccceEEEEcCCCCcCCCCCc-----------------cchhhh--CCCcCcEEEccCCcCCCccCcccCCCCCCCEEE
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFS-----------------LSDFLE--KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELD 231 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~-----------------~~~~l~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 231 (493)
....+++.|+|++|.+++ . +|..++ ++++|++|++++|.+.+.+|..|+++++|++|+
T Consensus 203 ~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVA---ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGCTTCCEEEEESCCCCG---GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred hcccCCCEEECcCCcccc---ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 456789999999999888 5 888888 999999999999999999999999999999999
Q ss_pred CcCCC-CCC-CCcccccCC------CCCcEEEcccccCCCCCCc--ccccc-ccCEEEccCccCCCCccccccccccc-h
Q 011101 232 VSNNK-LFG-GFPMEVVNI------KNLTFLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-Y 299 (493)
Q Consensus 232 Ls~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~ 299 (493)
|++|. +++ .+|..+..+ ++|++|+|++|.++ .+|. .+... +|++|++++|.+.|.+| .++.+..+ +
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 99998 877 788877776 88999999999888 7887 66665 88888888888887788 77777776 7
Q ss_pred hhcccCcCCCCCchhhhhhhh-hHHHHhccccccCCCcccccCCC--CCcEEEecCCCCCCCCccccc-------CCCCC
Q 011101 300 VTFANNEFTGPIPSSIGRAKY-LLEVLFLNNFFTGCLPYEIGFLS--NSTVFDVGNNRLTGPIPHSFG-------CLSSM 369 (493)
Q Consensus 300 L~l~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L 369 (493)
|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..+. +|++|++++|.+++.+|..|. .+.+|
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 888888877 77777888877 888888888877 6676666544 777777777777776666666 55667
Q ss_pred CEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccC--------CCCCCEEEeeCCcCCCCCCC
Q 011101 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRK--------LIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 370 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--------l~~L~~L~L~~N~l~~lp~~ 432 (493)
++|+|++|++++.....+..+++|++|+|++|+|+.++..+.. +++|+.|+|++|.|+.+|..
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 7777777777633333344466666666666666655443211 11566666666666655543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=7.8e-30 Score=270.34 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=120.7
Q ss_pred CCCCCCceeeccC-------CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCC
Q 011101 156 VCNKYKGFVCDVR-------PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLY 228 (493)
Q Consensus 156 ~C~~w~gv~c~~~-------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 228 (493)
.| .|.|+ |+.. +.....+++.|++++|++++ ..+..+..+++|++|++++|++++..+..|+++++|+
T Consensus 3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 36 77777 6532 22334689999999999998 6677899999999999999999988778899999999
Q ss_pred EEECcCCCCCCCCcccccCCCCCcEEEcccccCCC-CCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-hhhccc
Q 011101 229 ELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSG-PVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFAN 304 (493)
Q Consensus 229 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~ 304 (493)
+|+|++|.+++..+..|.++++|++|+|++|.+++ ..+..+... +|++|++++|.+.+.++ ..+..+..+ +|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999999988777779999999999999999885 244555544 88888888887544554 466666666 777777
Q ss_pred CcCCCCCchhhhh
Q 011101 305 NEFTGPIPSSIGR 317 (493)
Q Consensus 305 n~l~~~~p~~l~~ 317 (493)
|.+.+..+..+..
T Consensus 158 n~l~~~~~~~l~~ 170 (549)
T 2z81_A 158 LSLRNYQSQSLKS 170 (549)
T ss_dssp TTCCEECTTTTTT
T ss_pred CcccccChhhhhc
Confidence 7776655555443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=267.31 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=96.1
Q ss_pred hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC--CCcccccCCCCCcEEEecCCCCCCCCccc-ccCCCCCCEEEcc
Q 011101 299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG--CLPYEIGFLSNSTVFDVGNNRLTGPIPHS-FGCLSSMQYLNLA 375 (493)
Q Consensus 299 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls 375 (493)
+|++++|.+.+.++..++.+++|++|++++|.+++ .++..+..+++|++|+|++|.+++.+|.. +..+++|++|+|+
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 45555555555455555555555555555555553 23344555555666666666655434432 4555566666666
Q ss_pred cCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC-CC---chhhcccccCCCCCCC
Q 011101 376 MNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ-RS---REECGKFFSESKKCPN 450 (493)
Q Consensus 376 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~---~~~~~~~~~~~~~c~~ 450 (493)
+|++++.++..+. ++|+.|+|++|+|+.++..+..+++|++|++++|+|+.+|.. +. .+..+.+.+|+..|.+
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 6666554444332 678888888888888877777899999999999999999875 33 3455667788888864
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.6e-29 Score=271.26 Aligned_cols=272 Identities=15% Similarity=0.120 Sum_probs=167.8
Q ss_pred ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101 175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254 (493)
Q Consensus 175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 254 (493)
+++.|++++|.+++ ..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 255 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYFFN---ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCCSS---CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred ceeEEEeecCccCc---cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 45556666655555 33444555555555555555555 344555555555555555555554444445555555555
Q ss_pred EcccccCCCCCCc---------------------------ccccc-ccCEEEccCccCCCCccccccccccc-hhhcccC
Q 011101 255 DLRFNSFSGPVPA---------------------------EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANN 305 (493)
Q Consensus 255 ~Ls~n~l~~~~p~---------------------------~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n 305 (493)
++++|.+.+.++. .+... +|++|++++|.+.+..+..+..+..+ +|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 5555544433333 22222 55555555555555555555555555 6666666
Q ss_pred cCCCCCch-hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC---CcccccCCCCCCEEEcccCCCCC
Q 011101 306 EFTGPIPS-SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP---IPHSFGCLSSMQYLNLAMNQFYG 381 (493)
Q Consensus 306 ~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~ 381 (493)
.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|+|++|++++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 66554433 356666666777777776666666667777777777777777642 23456677777777777777776
Q ss_pred CcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC----CCchhhcccccCCCCCCCC
Q 011101 382 PVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ----RSREECGKFFSESKKCPNE 451 (493)
Q Consensus 382 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~~~~~c~~~ 451 (493)
..+..+..+++|+.|+|++|++++.++ .+..+++| .|++++|.|++++.. ...++...+.+|++.|.+.
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 667777778888888888888877644 67777888 888888888877643 2334556788888888543
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-28 Score=244.12 Aligned_cols=262 Identities=18% Similarity=0.166 Sum_probs=223.9
Q ss_pred CCCCCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEE
Q 011101 156 VCNKYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYEL 230 (493)
Q Consensus 156 ~C~~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 230 (493)
.| .|..+.|.... .....+++.|++++|++++ ..+..+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cC-CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE---eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 34 78888886332 2334689999999999998 556689999999999999999998889999999999999
Q ss_pred ECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC--Cccccccccccc-hhhcccCc
Q 011101 231 DVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ--NLPENIGSTGAL-YVTFANNE 306 (493)
Q Consensus 231 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~--~~p~~~~~~~~l-~L~l~~n~ 306 (493)
++++|.++ .+|..+. ++|++|++++|.+++..+..+... +|++|++++|.+.. ..+..+..+..+ +|++++|.
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 99999997 5565544 799999999999996555555555 99999999999964 667788888887 99999999
Q ss_pred CCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchh
Q 011101 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386 (493)
Q Consensus 307 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 386 (493)
+. .+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..
T Consensus 183 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 183 IT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp CC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred cc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 98 4565544 78999999999999888889999999999999999999877778999999999999999998 78888
Q ss_pred hcCCCCCcEEeeeCCcCCCCCc-ccc------CCCCCCEEEeeCCcCCC
Q 011101 387 VCQLPKLVNLSLSYNYFTQVGP-ECR------KLIKRKVLDVRMNCILD 428 (493)
Q Consensus 387 l~~l~~L~~L~Ls~N~l~~~~~-~~~------~l~~L~~L~L~~N~l~~ 428 (493)
+..+++|++|++++|+|++++. .|. ....|+.|++++|.+..
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 9999999999999999999865 332 34789999999999875
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=253.50 Aligned_cols=272 Identities=17% Similarity=0.154 Sum_probs=224.5
Q ss_pred CCCCCCCCCceeeccC-------CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCC
Q 011101 153 GPDVCNKYKGFVCDVR-------PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLK 225 (493)
Q Consensus 153 ~~~~C~~w~gv~c~~~-------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~ 225 (493)
....| .|.++ |+.. +.....+++.|++++|++++ ..+..+..+++|++|++++|.+++..+..|.+++
T Consensus 26 ~~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 26 ASLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp -CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cCCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 44566 88887 6522 22334689999999999998 5555899999999999999999988788899999
Q ss_pred CCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCc--ccccc-ccCEEEccCcc-CCCCccccccccccc-hh
Q 011101 226 FLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNK-FSQNLPENIGSTGAL-YV 300 (493)
Q Consensus 226 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~-l~~~~p~~~~~~~~l-~L 300 (493)
+|++|+|++|.+++..+..|.++++|++|+|++|.++ .++. .+... +|++|++++|. +.+..+..+..+..+ +|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999999998666666899999999999999998 5555 44444 99999999995 665556788888888 99
Q ss_pred hcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCccccc---CCCCCCEEEcccC
Q 011101 301 TFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG---CLSSMQYLNLAMN 377 (493)
Q Consensus 301 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N 377 (493)
++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+. ....++.++|+++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 9999999988899999999999999999998743333455689999999999999975544433 4567889999999
Q ss_pred CCCC----CcchhhcCCCCCcEEeeeCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCC
Q 011101 378 QFYG----PVPEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 378 ~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp 430 (493)
.+++ .+|..+..+++|+.|+|++|+|+.++.. +..+++|++|++++|.+..-.
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 8875 3677889999999999999999998876 589999999999999988743
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=4.5e-29 Score=267.75 Aligned_cols=279 Identities=16% Similarity=0.140 Sum_probs=205.8
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCC-CCcccccCCC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG-GFPMEVVNIK 249 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~ 249 (493)
....+++.|+|++|.+++ ..|..|+.+++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|.+++
T Consensus 77 ~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQS---FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTCTTCCEEECTTCCCCC---CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred hchhhcCEeECCCCcccc---cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 356789999999999888 668889999999999999999987776788999999999999999875 5688899999
Q ss_pred CCcEEEcccccCCCCCCcccccc---------------------------------------------------------
Q 011101 250 NLTFLDLRFNSFSGPVPAEIFYL--------------------------------------------------------- 272 (493)
Q Consensus 250 ~L~~L~Ls~n~l~~~~p~~~~~~--------------------------------------------------------- 272 (493)
+|++|+|++|.+++..+..+...
T Consensus 154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 99999999998775433211100
Q ss_pred --------------------------------------------------------------------------------
Q 011101 273 -------------------------------------------------------------------------------- 272 (493)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (493)
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~ 313 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEE
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEE
Confidence
Q ss_pred -------------------------------------ccCEEEccCccCCCC--cccc----------------------
Q 011101 273 -------------------------------------DLDVLFLNNNKFSQN--LPEN---------------------- 291 (493)
Q Consensus 273 -------------------------------------~L~~L~L~~n~l~~~--~p~~---------------------- 291 (493)
+|++|++++|.+.+. ++..
T Consensus 314 l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 393 (606)
T 3vq2_A 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393 (606)
T ss_dssp EESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC
T ss_pred cccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh
Confidence 122222222222211 0111
Q ss_pred -ccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC-CCcccccCCC
Q 011101 292 -IGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG-PIPHSFGCLS 367 (493)
Q Consensus 292 -~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~ 367 (493)
+..+..+ +|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..|..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 1122222 34444444444444 455666667777777777776677777788888888888888876 3677888889
Q ss_pred CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCCCCCCCCCc----hhhcccc
Q 011101 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCILDLPNQRSR----EECGKFF 442 (493)
Q Consensus 368 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~~~~----~~~~~~~ 442 (493)
+|++|+|++|++++..+..+..+++|++|+|++|+++++ +..+..+++|+.|++++|+|+.+|..+.. +..+.+.
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEcc
Confidence 999999999999888888899999999999999999997 44788999999999999999999876432 4567788
Q ss_pred cCCCCCCCCC
Q 011101 443 SESKKCPNER 452 (493)
Q Consensus 443 ~~~~~c~~~~ 452 (493)
+|++.|.+..
T Consensus 554 ~N~~~c~c~~ 563 (606)
T 3vq2_A 554 NNSVACICEH 563 (606)
T ss_dssp SCCCCCSSTT
T ss_pred CCCcccCCcc
Confidence 9999997654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.4e-29 Score=265.55 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=90.1
Q ss_pred hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC--CcccccCCCCCcEEEecCCCCCCCCcc-cccCCCCCCEEEcc
Q 011101 299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC--LPYEIGFLSNSTVFDVGNNRLTGPIPH-SFGCLSSMQYLNLA 375 (493)
Q Consensus 299 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls 375 (493)
+|++++|.+.+.++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.++. .+..+++|++|+|+
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 344444444444444444444444444444444431 123344445555555555555442332 24445555555555
Q ss_pred cCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC-CC---chhhcccccCCCCCCC
Q 011101 376 MNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ-RS---REECGKFFSESKKCPN 450 (493)
Q Consensus 376 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~---~~~~~~~~~~~~~c~~ 450 (493)
+|++++.++..+. ++|++|+|++|+|+.++..+..+++|++|++++|+|+++|.. +. .+..+.+.+|++.|.+
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 5555444333322 588888888888888887777999999999999999999876 43 3445678889999874
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-28 Score=244.01 Aligned_cols=259 Identities=19% Similarity=0.167 Sum_probs=221.4
Q ss_pred CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101 159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS 233 (493)
Q Consensus 159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 233 (493)
.|..+.|.... .....+++.|++++|.+++ ..+..+..+++|++|++++|.+++..+..|+++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 78888886332 2334689999999999998 567789999999999999999998888999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC--CCccccccccccchhhcccCcCCCC
Q 011101 234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS--QNLPENIGSTGALYVTFANNEFTGP 310 (493)
Q Consensus 234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~--~~~p~~~~~~~~l~L~l~~n~l~~~ 310 (493)
+|.++ .+|..+. ++|++|++++|.+.+..+..+... +|++|++++|.+. +..+..+..+...+|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-
Confidence 99997 5665554 899999999999995544445544 9999999999996 366777777744499999999985
Q ss_pred CchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL 390 (493)
Q Consensus 311 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 390 (493)
+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 665554 68999999999999888889999999999999999999877778999999999999999998 788889999
Q ss_pred CCCcEEeeeCCcCCCCCc-cccC------CCCCCEEEeeCCcCC
Q 011101 391 PKLVNLSLSYNYFTQVGP-ECRK------LIKRKVLDVRMNCIL 427 (493)
Q Consensus 391 ~~L~~L~Ls~N~l~~~~~-~~~~------l~~L~~L~L~~N~l~ 427 (493)
++|+.|++++|+|++++. .+.. ..+|+.|++++|.+.
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999999999999999865 3332 467999999999987
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=260.78 Aligned_cols=253 Identities=15% Similarity=0.055 Sum_probs=179.1
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+|+.|+|++|.++. ..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|+
T Consensus 79 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKL---IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp CTTCCEEECCSSCCCS---CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred CccCCEEECCCCcCCc---cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 3455555555555555 2233355555555555555555555555555555566666665555555555555566666
Q ss_pred EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF 330 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 330 (493)
+|+|++|.+++..+..+... +|+.|+|++|.+.+..+..+..+..+ +|++++|.+.+.++..+....+|++|++++|.
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 66666666553322223333 56666666666655555555555555 66666666666666555555678888888888
Q ss_pred ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-c
Q 011101 331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-E 409 (493)
Q Consensus 331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~ 409 (493)
+++.....|..+++|++|+|++|.+++..+..|..+.+|++|+|++|++++..+..+..+++|+.|+|++|+|++++. .
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 885544678899999999999999998778889999999999999999998889999999999999999999999876 5
Q ss_pred ccCCCCCCEEEeeCCcCCC
Q 011101 410 CRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 410 ~~~l~~L~~L~L~~N~l~~ 428 (493)
|..+++|+.|+|++|.+..
T Consensus 316 ~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp BSCGGGCCEEECCSSCEEC
T ss_pred cCCCcccCEEEccCCCccC
Confidence 6889999999999998874
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2e-28 Score=263.29 Aligned_cols=287 Identities=18% Similarity=0.139 Sum_probs=202.3
Q ss_pred ceeecc-----CCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCC
Q 011101 162 GFVCDV-----RPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK 236 (493)
Q Consensus 162 gv~c~~-----~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~ 236 (493)
.|.|.. .+.....+++.|||++|+|++ ..+.+|..+++|++|+|++|+|++..+.+|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 356653 233445689999999999998 556679999999999999999987777789999999999999999
Q ss_pred CCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC-Cccccccccccc-hhhcccCcCCCCCch
Q 011101 237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPS 313 (493)
Q Consensus 237 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~-~~p~~~~~~~~l-~L~l~~n~l~~~~p~ 313 (493)
|++..+..|.++++|++|+|++|++++..+..+... +|++|+|++|.+.+ ..+..++.+..+ +|++++|.+.+..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 987667778888889999988888885444445444 77777777777754 245555555544 555555554433322
Q ss_pred hhhhhh--------------------------------------------------------------------------
Q 011101 314 SIGRAK-------------------------------------------------------------------------- 319 (493)
Q Consensus 314 ~l~~l~-------------------------------------------------------------------------- 319 (493)
.+..+.
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 222111
Q ss_pred --------------------------------------------------------------------------------
Q 011101 320 -------------------------------------------------------------------------------- 319 (493)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (493)
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence
Q ss_pred --------------------hhHHHHhccccc------------------------------------------------
Q 011101 320 --------------------YLLEVLFLNNFF------------------------------------------------ 331 (493)
Q Consensus 320 --------------------~L~~L~L~~n~l------------------------------------------------ 331 (493)
+|+.|++++|.+
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence 111111111111
Q ss_pred --------------------------cCCCcccccCCCCCcEEEecCCCCC-CCCcccccCCCCCCEEEcccCCCCCCcc
Q 011101 332 --------------------------TGCLPYEIGFLSNSTVFDVGNNRLT-GPIPHSFGCLSSMQYLNLAMNQFYGPVP 384 (493)
Q Consensus 332 --------------------------~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 384 (493)
.+..+..+..+++|++|+|++|.+. +..|..|..+++|++|+|++|+|++..|
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 1111111222334555555555432 2356678888999999999999998889
Q ss_pred hhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC-C----CchhhcccccCCCCCCCC
Q 011101 385 EIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ-R----SREECGKFFSESKKCPNE 451 (493)
Q Consensus 385 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~-~----~~~~~~~~~~~~~~c~~~ 451 (493)
..|.++++|++|+|++|+|+++++ .+..+++|++|+|++|+|++++.. + ..++.+.+.+|++.|.+.
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999866 688999999999999999998643 3 345667889999999864
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=271.87 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=70.7
Q ss_pred hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101 321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 400 (493)
|++|++++|.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 44444444444444445555666666666666666666666666667777777777777666666666777777777777
Q ss_pred CcCCCCCc-cccCCCCCCEEEeeCCcCCCCC
Q 011101 401 NYFTQVGP-ECRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 401 N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp 430 (493)
|+|+++++ .+..+++|+.|++++|.|++++
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 77766644 4566777777777777666654
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=8.5e-29 Score=251.28 Aligned_cols=246 Identities=17% Similarity=0.086 Sum_probs=187.2
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.|++++|.+++ ..+..+..+++|++|++++|.+++..+..|+++++|++|+|++|.++...+..|.++++|++
T Consensus 69 ~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 567777777777766 44456777777777777777777666666777777777777777776444444567777777
Q ss_pred EEcccccCCCCCCcccccc-ccCEEEccCccCCCCcccccccc-------------------------------------
Q 011101 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGST------------------------------------- 295 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~------------------------------------- 295 (493)
|+|++|.+.+..+..+... +|++|++++|.+.+.....+..+
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 7777777765545445443 67777777776654322211111
Q ss_pred ccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEc
Q 011101 296 GAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNL 374 (493)
Q Consensus 296 ~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 374 (493)
..+ +|++++|.+++. ..+..+++|++|++++|.+.+..+..|..+++|++|+|++|+++ .++..+..+++|++|+|
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEEC
Confidence 123 677777877754 57889999999999999999888899999999999999999999 46777788999999999
Q ss_pred ccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101 375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 375 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
++|+++ .++..+..+++|+.|+|++|.|+.++ +..+++|+.|++++|.+..
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence 999998 56777888999999999999999884 6789999999999998875
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=244.04 Aligned_cols=221 Identities=20% Similarity=0.189 Sum_probs=193.7
Q ss_pred CCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEE
Q 011101 199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVL 277 (493)
Q Consensus 199 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L 277 (493)
...+++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+... +|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 67888999999999999999997 88999999999999999999999 888887776 99999
Q ss_pred EccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC
Q 011101 278 FLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG 357 (493)
Q Consensus 278 ~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 357 (493)
+|++|++.+.+|..++.. .+...+..+++|++|++++|.++ .+|..+..+++|++|+|++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~--------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST--------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE--------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred ECCCCCCccccChhHhhc--------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 999999888888766442 12234677889999999999999 78889999999999999999999
Q ss_pred CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCC-CCCCCCCc
Q 011101 358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCIL-DLPNQRSR 435 (493)
Q Consensus 358 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~-~lp~~~~~ 435 (493)
.++..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+. +..+..+++|+.|+|++|.+. .+|..+..
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 5777899999999999999999999999999999999999999988775 557899999999999998655 57876655
Q ss_pred hhh
Q 011101 436 EEC 438 (493)
Q Consensus 436 ~~~ 438 (493)
+..
T Consensus 300 L~~ 302 (328)
T 4fcg_A 300 LPA 302 (328)
T ss_dssp SCT
T ss_pred ccC
Confidence 443
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.1e-28 Score=260.23 Aligned_cols=266 Identities=17% Similarity=0.136 Sum_probs=181.9
Q ss_pred CCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC
Q 011101 160 YKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN 234 (493)
Q Consensus 160 w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~ 234 (493)
+..+.|... +.....+++.|++++|.+++ ..+..|.++++|++|++++|.+++..+..|+++++|++|+|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 344666532 23345678999999999988 6677888999999999999999887788889999999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCc
Q 011101 235 NKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP 312 (493)
Q Consensus 235 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p 312 (493)
|.+++..+..|.++++|++|+|++|.+++..+..+... +|++|++++|.+.+.....+..+..+ +|++++|.+.+..+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99888888888888888888888888885445555544 78888888888876432333335555 77777777776666
Q ss_pred hhhhhhhhhH--HHHhccccccCCC-------------------------------------------------------
Q 011101 313 SSIGRAKYLL--EVLFLNNFFTGCL------------------------------------------------------- 335 (493)
Q Consensus 313 ~~l~~l~~L~--~L~L~~n~l~~~~------------------------------------------------------- 335 (493)
..++.+.+|+ +|++++|.+.+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 6666666666 5555665554433
Q ss_pred --------------------cccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcE
Q 011101 336 --------------------PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVN 395 (493)
Q Consensus 336 --------------------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 395 (493)
+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 333455566666666666666 55556666666666666666666555555666666666
Q ss_pred EeeeCCcCCC-CCc-cccCCCCCCEEEeeCCcCCCC
Q 011101 396 LSLSYNYFTQ-VGP-ECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 396 L~Ls~N~l~~-~~~-~~~~l~~L~~L~L~~N~l~~l 429 (493)
|++++|.+.+ ++. .+..+++|++|++++|.++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 6666666653 222 355666666666666666554
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-28 Score=263.79 Aligned_cols=266 Identities=15% Similarity=0.048 Sum_probs=169.8
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+|+.|+|++|.+++ ..+..|+.+++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++
T Consensus 99 ~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 99 HTIQKLYMGFNAIRY---LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp TTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCC---CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 445555555555544 33334445555555555555554333333445555555555555554444444555555555
Q ss_pred EEcccccCCCCCCccccccccCE-------------------EEccCccCCCCccccccccccc-hhhcccCcCCCCCch
Q 011101 254 LDLRFNSFSGPVPAEIFYLDLDV-------------------LFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPS 313 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~~L~~-------------------L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~ 313 (493)
|+|++|.+++..... ..+|+. |++++|.+... +..+ ...+ .|++++|.+++. .
T Consensus 176 L~L~~N~l~~~~~~~--l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~ 248 (597)
T 3oja_B 176 LQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--A 248 (597)
T ss_dssp EECTTSCCSBCCGGG--CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--G
T ss_pred EECcCCCCCCcChhh--hhhhhhhhcccCccccccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--h
Confidence 555555544221100 012222 22222222211 1000 0123 778888888763 6
Q ss_pred hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCC
Q 011101 314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL 393 (493)
Q Consensus 314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 393 (493)
.+..+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++ ++..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 78999999999999999999889999999999999999999995 6777788999999999999999 678888899999
Q ss_pred cEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC--CCCCCchhhcccccCCCCCCCCCC
Q 011101 394 VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL--PNQRSREECGKFFSESKKCPNERS 453 (493)
Q Consensus 394 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~~~~~~~~~~~~~~~c~~~~~ 453 (493)
+.|+|++|.|++++ +..+++|+.|++++|.+..- ...+..+.-..+..+...|.....
T Consensus 327 ~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 386 (597)
T 3oja_B 327 ENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ 386 (597)
T ss_dssp SEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTTCE
T ss_pred CEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcchh
Confidence 99999999999884 67889999999999988641 111222222234455666665433
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7e-28 Score=253.72 Aligned_cols=88 Identities=25% Similarity=0.295 Sum_probs=56.1
Q ss_pred cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC--CcchhhcCCCCCcEEeeeCCcCCC-CCc-cccCCCC
Q 011101 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG--PVPEIVCQLPKLVNLSLSYNYFTQ-VGP-ECRKLIK 415 (493)
Q Consensus 340 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~ 415 (493)
..+++|++|++++|.+++.++..+..+++|++|+|++|++++ .+|..+..+++|++|++++|++++ ++. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 455667777777777776666667777777777777777764 344556667777777777777766 443 2455555
Q ss_pred CCEEEeeCCcCC
Q 011101 416 RKVLDVRMNCIL 427 (493)
Q Consensus 416 L~~L~L~~N~l~ 427 (493)
|++|++++|.|+
T Consensus 401 L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 401 LLSLNMSSNILT 412 (520)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECcCCCCC
Confidence 555555555553
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=8.9e-28 Score=261.17 Aligned_cols=256 Identities=18% Similarity=0.150 Sum_probs=154.4
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|+|++|++++ ..+..|.++++|++|++++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRR---LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CTTCSEEECCSSCCCC---CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCcEEECCCCCCCC---cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 3567777777777777 4555677777777777777777776677777777777777777777654444677777777
Q ss_pred EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhh--hhhhhHHHHhcc
Q 011101 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIG--RAKYLLEVLFLN 328 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~--~l~~L~~L~L~~ 328 (493)
+|+|++|.+++..+..+... +|++|+|++|.+.+..+..++.+..+ +|++++|.+++..+..+. .+++|++|++++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 77777777765444555444 77777777777776666666666666 677777766665555443 235666666666
Q ss_pred ccccCCCcccccCC---------------------------CC--------------------------CcEEEecCCCC
Q 011101 329 NFFTGCLPYEIGFL---------------------------SN--------------------------STVFDVGNNRL 355 (493)
Q Consensus 329 n~l~~~~p~~l~~l---------------------------~~--------------------------L~~L~Ls~N~l 355 (493)
|.+++..+..+..+ ++ |++|+|++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 66665444433322 23 44444444444
Q ss_pred CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC------CCc----cccCCCCCCEEEeeCCc
Q 011101 356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ------VGP----ECRKLIKRKVLDVRMNC 425 (493)
Q Consensus 356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~------~~~----~~~~l~~L~~L~L~~N~ 425 (493)
++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|...+ ++. .+..+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 44444444444555555555555444444444444444444444443221 111 34556667777777777
Q ss_pred CCCCCC
Q 011101 426 ILDLPN 431 (493)
Q Consensus 426 l~~lp~ 431 (493)
|++++.
T Consensus 341 l~~~~~ 346 (680)
T 1ziw_A 341 IPGIKS 346 (680)
T ss_dssp BCCCCT
T ss_pred cCCCCh
Confidence 766543
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-28 Score=240.57 Aligned_cols=228 Identities=22% Similarity=0.210 Sum_probs=157.9
Q ss_pred CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCC--CcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEE
Q 011101 201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGG--FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVL 277 (493)
Q Consensus 201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L 277 (493)
++|++|++++|+++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+. .++..+... +|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3555555555555533333345555555555555555421 2344445555555555555555 344333333 55555
Q ss_pred EccCccCCCCcc-ccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC-CCcccccCCCCCcEEEecCCC
Q 011101 278 FLNNNKFSQNLP-ENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG-CLPYEIGFLSNSTVFDVGNNR 354 (493)
Q Consensus 278 ~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~ 354 (493)
++++|.+.+..+ ..+..+..+ +|++++|.+.+..+..+..+++|++|++++|.+.+ .++..+..+++|++|+|++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 565555554332 344455444 56666666665666677778888888888888876 567888899999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCC-CCCCEEEeeCCcCCCC
Q 011101 355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL-IKRKVLDVRMNCILDL 429 (493)
Q Consensus 355 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l-~~L~~L~L~~N~l~~l 429 (493)
+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+|++..+ .+..+ .+|+.|++++|.|+.-
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 997778889999999999999999987777778889999999999999998654 67777 4899999999988763
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.8e-27 Score=251.60 Aligned_cols=109 Identities=25% Similarity=0.221 Sum_probs=88.3
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
...+++.|++++|.+++ ..+..|..+++|++|++++|++++..+..|.++++|++|+|++|.++ .+|.. .+++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISE---LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCC---CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccc---cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccC
Confidence 34689999999999998 56678999999999999999999887888999999999999999986 45554 78888
Q ss_pred cEEEcccccCCC-CCCcccccc-ccCEEEccCccCCC
Q 011101 252 TFLDLRFNSFSG-PVPAEIFYL-DLDVLFLNNNKFSQ 286 (493)
Q Consensus 252 ~~L~Ls~n~l~~-~~p~~~~~~-~L~~L~L~~n~l~~ 286 (493)
++|+|++|.+++ .+|..+... +|++|++++|.+.+
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 888888888875 234556555 78888888777754
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.1e-28 Score=268.43 Aligned_cols=257 Identities=18% Similarity=0.246 Sum_probs=169.4
Q ss_pred CCccceEEEEcCCCCcCCCCC--------------ccchhhh--CCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDF--------------SLSDFLE--KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN 234 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~--------------~~~~~l~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~ 234 (493)
..+.+++.|+|++|.+++..+ .+|..++ ++++|++|+|++|++.+.+|..|+++++|++|+|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 345778888888888887100 0677766 888888888888888888888888888888888888
Q ss_pred CC-CCC-CCcccccCCC-------CCcEEEcccccCCCCCCc--ccccc-ccCEEEccCccCCCCccccccccccc-hhh
Q 011101 235 NK-LFG-GFPMEVVNIK-------NLTFLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVT 301 (493)
Q Consensus 235 n~-l~~-~~p~~l~~l~-------~L~~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~ 301 (493)
|+ +++ .+|..+..+. +|++|+|++|.++ .+|. .+... +|++|+|++|.+. .+| .++.+..+ +|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 87 776 6776665554 8888888888887 7777 56555 7888888888877 666 67777766 778
Q ss_pred cccCcCCCCCchhhhhhhh-hHHHHhccccccCCCcccccCCCC--CcEEEecCCCCCCCCc------------------
Q 011101 302 FANNEFTGPIPSSIGRAKY-LLEVLFLNNFFTGCLPYEIGFLSN--STVFDVGNNRLTGPIP------------------ 360 (493)
Q Consensus 302 l~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p------------------ 360 (493)
+++|.+. .+|..+..+++ |++|+|++|.++ .+|..+..+.. |+.|+|++|.+++.+|
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 8888877 77777777777 777777777777 56665555433 6666666666655433
Q ss_pred ----------ccc-cCCCCCCEEEcccCCCCCCcchhhcCCC--------CCcEEeeeCCcCCCCCcccc--CCCCCCEE
Q 011101 361 ----------HSF-GCLSSMQYLNLAMNQFYGPVPEIVCQLP--------KLVNLSLSYNYFTQVGPECR--KLIKRKVL 419 (493)
Q Consensus 361 ----------~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--------~L~~L~Ls~N~l~~~~~~~~--~l~~L~~L 419 (493)
..+ ..+++|++|+|++|+|+ .+|..+.... +|+.|+|++|+|+.++..+. .+++|+.|
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 222 23444555555555554 3333322211 45555555555555444443 55555555
Q ss_pred EeeCCcCCCCCCCC
Q 011101 420 DVRMNCILDLPNQR 433 (493)
Q Consensus 420 ~L~~N~l~~lp~~~ 433 (493)
+|++|.|+++|..+
T Consensus 759 ~Ls~N~L~~lp~~l 772 (876)
T 4ecn_A 759 DVSYNCFSSFPTQP 772 (876)
T ss_dssp ECCSSCCSSCCCGG
T ss_pred EeCCCCCCccchhh
Confidence 55555555555443
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=7.3e-28 Score=261.84 Aligned_cols=275 Identities=17% Similarity=0.151 Sum_probs=203.3
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCcc--CcccCC--CCCCCEEECcCCCCCCCCcccccCCC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSI--PKMTSK--LKFLYELDVSNNKLFGGFPMEVVNIK 249 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~--p~~~~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~ 249 (493)
.+++.|++++|.+.+ ..+..+..+++|++|++++|.+.... ...|.. ..+|++|++++|.+++..+..|..++
T Consensus 329 ~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPG---IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCCEEECCSCCBCC---CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCEEECCCCccCC---CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 344555555555554 33444555555555555555433211 111111 13566666666667666677788888
Q ss_pred CCcEEEcccccCCCCCCc-ccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCC--CCCchhhhhhhhhHHH
Q 011101 250 NLTFLDLRFNSFSGPVPA-EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT--GPIPSSIGRAKYLLEV 324 (493)
Q Consensus 250 ~L~~L~Ls~n~l~~~~p~-~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~--~~~p~~l~~l~~L~~L 324 (493)
+|++|+|++|.+.+.++. .+... +|++|++++|++.+..+..+..+..+ +|++++|.+. +.+|..+..+++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 888888888888766663 33333 88888888888877777777777777 8888888876 5678889999999999
Q ss_pred HhccccccCCCcccccCCCCCcEEEecCCCCCCCC--------cccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEE
Q 011101 325 LFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI--------PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNL 396 (493)
Q Consensus 325 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 396 (493)
++++|.+++..+..|..+++|++|+|++|.+++.. ...|..+++|++|+|++|+++...+..|.++++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 99999999777778899999999999999988531 1237888999999999999995545578899999999
Q ss_pred eeeCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCCCC-----CCchhhcccccCCCCCCCC
Q 011101 397 SLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLPNQ-----RSREECGKFFSESKKCPNE 451 (493)
Q Consensus 397 ~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~-----~~~~~~~~~~~~~~~c~~~ 451 (493)
+|++|+|+++++. |..+++|+.|++++|.|++++.. +..+....+.+|++.|.+.
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999998774 67899999999999999998753 3456667888999999875
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.1e-27 Score=247.92 Aligned_cols=226 Identities=18% Similarity=0.084 Sum_probs=150.7
Q ss_pred CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEc
Q 011101 201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFL 279 (493)
Q Consensus 201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L 279 (493)
++|++|+|++|+|++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|.+++..+..+... +|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 355555555555555445555555555555555555555444555555555555555555553322223322 5555555
Q ss_pred cCccCCCCccccccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC
Q 011101 280 NNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG 357 (493)
Q Consensus 280 ~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 357 (493)
++|.+....+..+..+..+ +|++++|+..+.++ ..|..+.+|++|++++|.+++ ++ .+..+.+|++|+|++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 5555554333444555444 55555533322333 356777888888888888874 33 57788889999999999988
Q ss_pred CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCC
Q 011101 358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 358 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~ 428 (493)
..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+|++++. .+..+++|+.|+|++|.+..
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 778888888999999999999887778888888899999999999988765 46778889999999987653
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.6e-28 Score=240.88 Aligned_cols=244 Identities=16% Similarity=0.229 Sum_probs=212.5
Q ss_pred CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCc--cCcccCCCCCCCEEE
Q 011101 159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKS--IPKMTSKLKFLYELD 231 (493)
Q Consensus 159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~ 231 (493)
.|.++.|.... .....+++.|++++|+++. .....+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 8 ~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 89999997433 2344689999999999997 4445589999999999999999843 356677899999999
Q ss_pred CcCCCCCCCCcccccCCCCCcEEEcccccCCCCCC-cccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCC
Q 011101 232 VSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVP-AEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT 308 (493)
Q Consensus 232 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~ 308 (493)
|++|.++ .++..+..+++|++|++++|.+++..+ ..+... +|++|++++|.+.+..+..+..+..+ +|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 9999996 577779999999999999999985443 344444 99999999999998888888888888 9999999998
Q ss_pred C-CCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhh
Q 011101 309 G-PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV 387 (493)
Q Consensus 309 ~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 387 (493)
+ .++..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 6 578889999999999999999998888899999999999999999997777788999999999999999999889889
Q ss_pred cCCC-CCcEEeeeCCcCCCC
Q 011101 388 CQLP-KLVNLSLSYNYFTQV 406 (493)
Q Consensus 388 ~~l~-~L~~L~Ls~N~l~~~ 406 (493)
..++ +|++|+|++|.+++.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 8884 999999999999875
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.3e-30 Score=251.77 Aligned_cols=266 Identities=18% Similarity=0.112 Sum_probs=213.8
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCC-CccCcccC----
Q 011101 148 ANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFT-KSIPKMTS---- 222 (493)
Q Consensus 148 ~~~W~~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~~~p~~~~---- 222 (493)
...|.....|..+..+.... ...+++.|++++|.+ . +|..+... |+.|++++|.++ ..++..+.
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~----~~~~L~~l~l~~n~l-~----~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~ 89 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYG----GGRSLEYLLKRVDTE-A----DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGAL 89 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEE----EEEECTTHHHHCCTT-C----CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHH
T ss_pred ccchHHHhhhhccccEEEEc----cCCCceeEeeccccc-c----cHHHHHHH--HhhcccccccccCCCcCHHHHHHHH
Confidence 34576444554555544321 235788899999998 5 56666544 899999999994 45555554
Q ss_pred ---CCCCCCEEECcCCCCCCCCcccc--cCCCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCcccc
Q 011101 223 ---KLKFLYELDVSNNKLFGGFPMEV--VNIKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPEN 291 (493)
Q Consensus 223 ---~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~ 291 (493)
++++|++|+|++|.+++.+|..+ ..+++|++|+|++|.+++. |..+.. .+|++|+|++|++.+..+..
T Consensus 90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp HHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred HhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 78999999999999998888876 8999999999999999966 665543 48999999999999888889
Q ss_pred ccccccc-hhhcccCcCCCC--Cchhh--hhhhhhHHHHhccccccC--CCc-ccccCCCCCcEEEecCCCCCCCCc-cc
Q 011101 292 IGSTGAL-YVTFANNEFTGP--IPSSI--GRAKYLLEVLFLNNFFTG--CLP-YEIGFLSNSTVFDVGNNRLTGPIP-HS 362 (493)
Q Consensus 292 ~~~~~~l-~L~l~~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~ 362 (493)
++.+..+ +|++++|.+.+. ++..+ ..+++|++|++++|.+++ .++ ..+..+++|++|+|++|.+++..+ ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 9998888 999999998764 33444 788999999999999983 222 344678999999999999998764 45
Q ss_pred ccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC
Q 011101 363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 363 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l 429 (493)
+..+++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++++. +..+++|++|++++|.|++.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 667899999999999998 7777765 899999999999999954 89999999999999999863
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=247.26 Aligned_cols=242 Identities=18% Similarity=0.123 Sum_probs=166.3
Q ss_pred EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcc
Q 011101 178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR 257 (493)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 257 (493)
.++.++.+++. +|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 47 ~v~c~~~~l~~----iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 47 KVICVRKNLRE----VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp EEECCSCCCSS----CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred EEEeCCCCcCc----CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45555555554 444332 456666666666665555566666666666666666665555566666666666666
Q ss_pred cccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCC
Q 011101 258 FNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 258 ~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
+|.++...+..+... +|++|+|++|.+....+..+..+..+ +|++++|+..+.++ ..|.++++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 666663333333333 66666666666665444455555555 66666643333333 35777788888888888887 4
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCC
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL 413 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l 413 (493)
++ .+..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++++. .+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 47788888999999998887778888888889999999998887777788888889999999998888765 46778
Q ss_pred CCCCEEEeeCCcCC
Q 011101 414 IKRKVLDVRMNCIL 427 (493)
Q Consensus 414 ~~L~~L~L~~N~l~ 427 (493)
++|+.|+|++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 88899999888764
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=263.17 Aligned_cols=257 Identities=17% Similarity=0.117 Sum_probs=202.4
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcc--cCCCCCCCEEECcCCCCCCCCc-ccccC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKM--TSKLKFLYELDVSNNKLFGGFP-MEVVN 247 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p-~~l~~ 247 (493)
....+|+.|+|++|.+.+ ..|..|..+++|++|+|++|.+++.++.. |+++++|++|+|++|.+++..+ ..|.+
T Consensus 70 ~~L~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYF---LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp SSCTTCCEEECTTCCCCE---ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred cCCCCCCEEECCCCcCcc---cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 345678888888888877 56777888888888888888887755544 7788888888888888876544 46778
Q ss_pred CCCCcEEEcccccCCCCCCcccccc---------------------------------ccCEEEccCccCCCCccccccc
Q 011101 248 IKNLTFLDLRFNSFSGPVPAEIFYL---------------------------------DLDVLFLNNNKFSQNLPENIGS 294 (493)
Q Consensus 248 l~~L~~L~Ls~n~l~~~~p~~~~~~---------------------------------~L~~L~L~~n~l~~~~p~~~~~ 294 (493)
+++|++|+|++|.+++..+..+... +|++|++++|.+.+..+..+..
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 8888888888887776555443221 2667777777665444433321
Q ss_pred c--------------------------------------ccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCC
Q 011101 295 T--------------------------------------GAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL 335 (493)
Q Consensus 295 ~--------------------------------------~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 335 (493)
. ..+ .|++++|.+.+..+..+..+++|+.|+|++|.+.+..
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence 1 223 6788888888777888899999999999999999888
Q ss_pred cccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCC
Q 011101 336 PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIK 415 (493)
Q Consensus 336 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 415 (493)
+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.++++.. +++
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~ 382 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPS 382 (844)
T ss_dssp TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCS
T ss_pred hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCC
Confidence 8899999999999999999998889999999999999999999998777889999999999999999987643 778
Q ss_pred CCEEEeeCCcCCCCCCCCC
Q 011101 416 RKVLDVRMNCILDLPNQRS 434 (493)
Q Consensus 416 L~~L~L~~N~l~~lp~~~~ 434 (493)
|+.|++++|.++.+|....
T Consensus 383 L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 383 IPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp CSEEEEESCCCCCCCCCCT
T ss_pred cchhccCCCCccccccccc
Confidence 8999999999888876533
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.8e-27 Score=251.31 Aligned_cols=246 Identities=16% Similarity=0.039 Sum_probs=201.0
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 250 (493)
....+++.|++++|.+++ ..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TSCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCCcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 345789999999999998 66678999999999999999999888889999999999999999999888999999999
Q ss_pred CcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC-Cccccccccccc-hhhcccCcCCCCCchhhhhhhhhH----H
Q 011101 251 LTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLL----E 323 (493)
Q Consensus 251 L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~-~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~----~ 323 (493)
|++|+|++|.+++..+..+... +|++|++++|.+.+ .+|..++++..+ +|++++|.+.+..+..+..+.+|+ +
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 9999999999996665666666 99999999999986 579999999988 999999999988888898888876 6
Q ss_pred HHhccccccCCCcccccCCCCCcEEEecCCCCCC----------------------------------------------
Q 011101 324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG---------------------------------------------- 357 (493)
Q Consensus 324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---------------------------------------------- 357 (493)
|++++|.+++..+..+.. .+|++|++++|.+++
T Consensus 186 L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 999999998655555444 489999998887641
Q ss_pred ------------CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCc
Q 011101 358 ------------PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC 425 (493)
Q Consensus 358 ------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~ 425 (493)
.++. +..+++|++|++++|.+. .++ .+..+++|++|++++|.+..++ .+ .+++|+.|++++|.
T Consensus 265 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCS
T ss_pred heeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCc
Confidence 1222 445567777777777775 344 5666777777777777775554 44 77777777777773
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.2e-27 Score=251.22 Aligned_cols=276 Identities=19% Similarity=0.174 Sum_probs=180.9
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCC-CCcccccCCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG-GFPMEVVNIKN 250 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~ 250 (493)
...+++.|+|++|.+++ ..+..|..+++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..|.++++
T Consensus 74 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (570)
T ss_dssp TCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred CchhCCEEeCcCCcCCc---cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC
Confidence 45678888888888877 555778888888888888888886555568888888888888888876 46888888888
Q ss_pred CcEEEcccccCCCCCCcccccc----------------------------------------------------------
Q 011101 251 LTFLDLRFNSFSGPVPAEIFYL---------------------------------------------------------- 272 (493)
Q Consensus 251 L~~L~Ls~n~l~~~~p~~~~~~---------------------------------------------------------- 272 (493)
|++|++++|.+++..+..+...
T Consensus 151 L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 230 (570)
T 2z63_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230 (570)
T ss_dssp CCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEE
T ss_pred CCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCcccccee
Confidence 8888888887764333222111
Q ss_pred ----------------------------------------------------ccCEEEccCccCCCCcccccc-------
Q 011101 273 ----------------------------------------------------DLDVLFLNNNKFSQNLPENIG------- 293 (493)
Q Consensus 273 ----------------------------------------------------~L~~L~L~~n~l~~~~p~~~~------- 293 (493)
+|++|++++|.+. .++..+.
T Consensus 231 ~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L 309 (570)
T 2z63_A 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHL 309 (570)
T ss_dssp EEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEE
T ss_pred eeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEE
Confidence 2222222222222 1111111
Q ss_pred -----------------------------------ccccc-hhhcccCcCCCCC--chhhhhhh----------------
Q 011101 294 -----------------------------------STGAL-YVTFANNEFTGPI--PSSIGRAK---------------- 319 (493)
Q Consensus 294 -----------------------------------~~~~l-~L~l~~n~l~~~~--p~~l~~l~---------------- 319 (493)
.+..+ +|++++|.+.+.. +..+..++
T Consensus 310 ~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp EEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred eeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 11112 3344444433221 33344444
Q ss_pred -------hhHHHHhccccccCCCc-ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCC-CCcchhhcCC
Q 011101 320 -------YLLEVLFLNNFFTGCLP-YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFY-GPVPEIVCQL 390 (493)
Q Consensus 320 -------~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l 390 (493)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++ +.+|..+..+
T Consensus 390 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 44445555555544333 34566777777777777777667777777888888888888876 4577778888
Q ss_pred CCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCCCCCCC-C---CchhhcccccCCCCCCCC
Q 011101 391 PKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCILDLPNQ-R---SREECGKFFSESKKCPNE 451 (493)
Q Consensus 391 ~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~-~---~~~~~~~~~~~~~~c~~~ 451 (493)
++|+.|+|++|+++++ +..+..+++|++|++++|.|++++.. + ..++.+.+.+|+..|.+.
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 8888888888888887 44778888899999999988887643 2 344556677787777543
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.1e-27 Score=242.91 Aligned_cols=242 Identities=19% Similarity=0.127 Sum_probs=210.5
Q ss_pred CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101 159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS 233 (493)
Q Consensus 159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 233 (493)
.|..|.|.... .....+++.|+|++|++++ ..+..|..+++|++|+|++|.|++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35677776432 3345689999999999998 678889999999999999999998888899999999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-hhhcccCcCCCC
Q 011101 234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFANNEFTGP 310 (493)
Q Consensus 234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~l~~~ 310 (493)
+|.+++..+..|.++++|++|+|++|.++...+..+... +|++|+|++|...+.++ ..+..+..+ +|++++|.+.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 999987777789999999999999999994444445444 99999999965554554 457788887 999999999854
Q ss_pred CchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL 390 (493)
Q Consensus 311 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 390 (493)
+ .+..+.+|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 57889999999999999999889999999999999999999998888999999999999999999997777788899
Q ss_pred CCCcEEeeeCCcCCC
Q 011101 391 PKLVNLSLSYNYFTQ 405 (493)
Q Consensus 391 ~~L~~L~Ls~N~l~~ 405 (493)
++|+.|+|++|.+..
T Consensus 290 ~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 290 RYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEccCCCcCC
Confidence 999999999998765
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-27 Score=231.06 Aligned_cols=222 Identities=18% Similarity=0.091 Sum_probs=148.0
Q ss_pred EEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101 177 AGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256 (493)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 256 (493)
+.+++++++++. +|..+ .++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 14 ~~~~c~~~~l~~----ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQA----VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSS----CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCccc----CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 678888888887 55433 468999999999998777677889999999999999998777888889999999999
Q ss_pred cccc-CCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 257 RFNS-FSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 257 s~n~-l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
++|. +....+..+... +|++|++++|.+.+..+..+.. +++|++|++++|.+++.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-----------------------LAALQYLYLQDNALQAL 144 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------------CTTCCEEECCSSCCCCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-----------------------CcCCCEEECCCCccccc
Confidence 9997 664445555554 8888888888887544444444 44444555555555443
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCC
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL 413 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l 413 (493)
.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|+|+++++ .+..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 33445555566666666666554334445555566666666666655555555555666666666666665543 35555
Q ss_pred CCCCEEEeeCCcCC
Q 011101 414 IKRKVLDVRMNCIL 427 (493)
Q Consensus 414 ~~L~~L~L~~N~l~ 427 (493)
++|+.|++++|.+.
T Consensus 225 ~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 225 RALQYLRLNDNPWV 238 (285)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cccCEEeccCCCcc
Confidence 66666666666554
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8.5e-27 Score=240.44 Aligned_cols=242 Identities=18% Similarity=0.145 Sum_probs=210.5
Q ss_pred CCCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101 159 KYKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS 233 (493)
Q Consensus 159 ~w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 233 (493)
.|..|.|... +.....+++.|+|++|++++ ..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567788632 23445789999999999998 667889999999999999999998877899999999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-hhhcccCcCCCC
Q 011101 234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFANNEFTGP 310 (493)
Q Consensus 234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~l~~~ 310 (493)
+|.++...+..|..+++|++|+|++|.++...+..+... +|++|+|++|...+.++ ..+..+..+ +|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999987777789999999999999999995444455544 99999999965554554 467888888 9999999998 4
Q ss_pred CchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL 390 (493)
Q Consensus 311 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 390 (493)
+| .+..+.+|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 47889999999999999998889999999999999999999998888899999999999999999998777888999
Q ss_pred CCCcEEeeeCCcCCC
Q 011101 391 PKLVNLSLSYNYFTQ 405 (493)
Q Consensus 391 ~~L~~L~Ls~N~l~~ 405 (493)
++|+.|+|++|.+..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 999999999998764
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=5.6e-27 Score=248.36 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=42.1
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCC-ccCcccCCCCCCCEEECcCCCCCCCCc-ccccCCCCC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTK-SIPKMTSKLKFLYELDVSNNKLFGGFP-MEVVNIKNL 251 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L 251 (493)
.+++.|++++|.+++ ..+..++.+++|++|++++|.+++ ..+..++++++|++|++++|.+.+.++ ..|.++++|
T Consensus 74 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 74 GSLEHLDLSDNHLSS---LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TTCCEEECTTSCCCS---CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred ccCCEEECCCCccCc---cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 444555555555544 333334555555555555555443 133344455555555555554222222 344455555
Q ss_pred cEEEcccccCCCCCCc
Q 011101 252 TFLDLRFNSFSGPVPA 267 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~ 267 (493)
++|++++|.+++.++.
T Consensus 151 ~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 151 NELEIKALSLRNYQSQ 166 (549)
T ss_dssp EEEEEEETTCCEECTT
T ss_pred CeeeccCCcccccChh
Confidence 5555555555443333
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=236.89 Aligned_cols=264 Identities=14% Similarity=0.077 Sum_probs=220.1
Q ss_pred EEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccc
Q 011101 179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRF 258 (493)
Q Consensus 179 L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 258 (493)
.++++++++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 36 c~~~~~~l~~----iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNS----IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSS----CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eeCCCCCccc----cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 8999999997 676554 5899999999999976666899999999999999999988888899999999999999
Q ss_pred ccCCCCCCcc-cccc-ccCEEEccCccCCCCcc-ccccccccc-hhhcccCc-CCCCCchhhhhhhhhHHHHhccccccC
Q 011101 259 NSFSGPVPAE-IFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFANNE-FTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 259 n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
|.+++ ++.. +... +|++|++++|++.+... ..+..+..+ +|++++|. +....+..+..+++|++|++++|.+.+
T Consensus 110 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 99994 5544 5544 99999999999985433 377888888 99999994 666667789999999999999999998
Q ss_pred CCcccccCCCCCcEEEecCCCCCCCCccc-ccCCCCCCEEEcccCCCCCCcchhhc---CCCCCcEEeeeCCcCCC----
Q 011101 334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHS-FGCLSSMQYLNLAMNQFYGPVPEIVC---QLPKLVNLSLSYNYFTQ---- 405 (493)
Q Consensus 334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~---- 405 (493)
..+..+..+++|++|++++|.++ .++.. +..+++|++|+|++|++++..+..+. ....++.++|+++.+++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 88999999999999999999997 45544 45689999999999999876544332 45678999999999886
Q ss_pred -CCccccCCCCCCEEEeeCCcCCCCCCCC----CchhhcccccCCCCCCC
Q 011101 406 -VGPECRKLIKRKVLDVRMNCILDLPNQR----SREECGKFFSESKKCPN 450 (493)
Q Consensus 406 -~~~~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~~~~~c~~ 450 (493)
++..+..+++|+.|++++|.|+.+|... ..++.+.+.+|++.|.+
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 4456789999999999999999999753 34555677888888863
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.3e-27 Score=233.96 Aligned_cols=238 Identities=14% Similarity=0.059 Sum_probs=191.6
Q ss_pred ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101 175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254 (493)
Q Consensus 175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 254 (493)
+++..+++.+.+.. .....+..+++|++|++++|++++..+..|.++++|++|+|++|.+++..+ +..+++|++|
T Consensus 11 ~l~i~~ls~~~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQ---ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHH---HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred ceeEeeccccchhh---hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 46667777777766 445556677789999999999988777788899999999999998875543 8888999999
Q ss_pred EcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101 255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 255 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
+|++|.+++ ++ ...+|++|++++|.+.+..+..+ ..+ +|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 86 ~Ls~n~l~~-l~---~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 86 DLNNNYVQE-LL---VGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp ECCSSEEEE-EE---ECTTCCEEECCSSCCSEEEECCC---SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred ECcCCcccc-cc---CCCCcCEEECCCCccCCcCcccc---CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 999998873 32 12588999999999886554443 334 88889999887777788888999999999999987
Q ss_pred CCcccc-cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccC
Q 011101 334 CLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRK 412 (493)
Q Consensus 334 ~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 412 (493)
..+..+ ..+++|++|+|++|.+++. +. ...+++|++|+|++|++++ ++..+..+++|+.|+|++|+|++++..+..
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhc
Confidence 666666 4789999999999999843 33 3358899999999999985 555588889999999999999988888888
Q ss_pred CCCCCEEEeeCCcCC
Q 011101 413 LIKRKVLDVRMNCIL 427 (493)
Q Consensus 413 l~~L~~L~L~~N~l~ 427 (493)
+++|+.|++++|.++
T Consensus 236 l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 236 SQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECTTCCCB
T ss_pred CCCCCEEEccCCCcc
Confidence 999999999999988
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=6.4e-26 Score=226.16 Aligned_cols=242 Identities=22% Similarity=0.280 Sum_probs=202.9
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 250 (493)
....+++.|++++|.++. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.....++ .+..+++
T Consensus 85 ~~l~~L~~L~L~~n~i~~----~~-~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~ 156 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITD----IS-ALQNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTG 156 (347)
T ss_dssp TTCTTCCEEECCSSCCCC----CG-GGTTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTT
T ss_pred hcCCcCCEEEccCCcccC----ch-HHcCCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCC
Confidence 456789999999999987 43 6999999999999999998643 3 8999999999999997654444 4899999
Q ss_pred CcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101 251 LTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNN 329 (493)
Q Consensus 251 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 329 (493)
|++|++++|.+.+ ++......+|++|++++|.+.+..+ +..+..+ ++++++|.+.+..+ +..+++|++|++++|
T Consensus 157 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 157 LNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp CCEEECCSSCCCC-CGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred CcEEEecCCCcCC-chhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 9999999999984 4432233399999999999985433 6677777 89999999886543 888999999999999
Q ss_pred cccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-
Q 011101 330 FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP- 408 (493)
Q Consensus 330 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~- 408 (493)
.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..+
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 9985433 8899999999999999985 4 4688999999999999999864 457889999999999999998754
Q ss_pred cccCCCCCCEEEeeCCcCCCCCC
Q 011101 409 ECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 409 ~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
.+..+++|++|++++|.+++++.
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG
T ss_pred HhhccccCCEEEccCCccccccC
Confidence 67899999999999999998764
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4e-26 Score=221.47 Aligned_cols=222 Identities=17% Similarity=0.073 Sum_probs=183.8
Q ss_pred cEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCc
Q 011101 204 AIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNN 282 (493)
Q Consensus 204 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n 282 (493)
++++.+++.++. +|..+ .++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+... +|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678888888874 55433 5789999999999987777788999999999999999986666666655 8888888888
Q ss_pred c-CCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcc
Q 011101 283 K-FSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH 361 (493)
Q Consensus 283 ~-l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 361 (493)
. +.. ..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+.
T Consensus 91 ~~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 91 AQLRS-----------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TTCCC-----------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccc-----------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 7 542 2244566778888899999999877788899999999999999999976667
Q ss_pred cccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCCCCCCC----CCch
Q 011101 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCILDLPNQ----RSRE 436 (493)
Q Consensus 362 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~----~~~~ 436 (493)
.|..+++|++|+|++|++++..+..+..+++|+.|++++|+|+++ +..+..+++|+.|++++|.|++++.. ...+
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 789999999999999999966666789999999999999999997 45789999999999999999998743 3445
Q ss_pred hhcccccCCCCCCCC
Q 011101 437 ECGKFFSESKKCPNE 451 (493)
Q Consensus 437 ~~~~~~~~~~~c~~~ 451 (493)
..+.+.+|++.|.+.
T Consensus 228 ~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCR 242 (285)
T ss_dssp CEEECCSSCEECSGG
T ss_pred CEEeccCCCccCCCC
Confidence 567788888888643
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-25 Score=215.67 Aligned_cols=216 Identities=24% Similarity=0.211 Sum_probs=162.1
Q ss_pred CCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101 154 PDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS 233 (493)
Q Consensus 154 ~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 233 (493)
.+.| .|.|+.|.-. .+++.+++++++++. +|..+. .+|++|++++|++++..+..|.++++|++|+|+
T Consensus 2 ~~~C-~~~~~~C~c~-----~~~~~l~~~~~~l~~----ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 69 (270)
T 2o6q_A 2 EALC-KKDGGVCSCN-----NNKNSVDCSSKKLTA----IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69 (270)
T ss_dssp CCCB-GGGTCSBEEE-----TTTTEEECTTSCCSS----CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC
T ss_pred CccC-CCCCCCCEeC-----CCCCEEEccCCCCCc----cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC
Confidence 4678 9999998743 346789999999987 555443 578999999999987776789999999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCc
Q 011101 234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP 312 (493)
Q Consensus 234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p 312 (493)
+|.++...+..|.++++|++|+|++|.+++..+..+... +|++|+|++|.+.+
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------- 123 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-------------------------- 123 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC--------------------------
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe--------------------------
Confidence 999986666667888999999999988874333333333 66666666665542
Q ss_pred hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCC
Q 011101 313 SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK 392 (493)
Q Consensus 313 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 392 (493)
..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus 124 ---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 124 ---------------------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp ---------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---------------------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 22334556677888888888887555555777888888888888887666666777888
Q ss_pred CcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCC
Q 011101 393 LVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 393 L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~ 428 (493)
|++|+|++|+|++++. .+..+++|+.|++++|.+..
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 8888888888887765 46778888888888887765
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=238.22 Aligned_cols=250 Identities=16% Similarity=0.075 Sum_probs=188.9
Q ss_pred CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 250 (493)
....+++.|++++|.+++ ..+..|..+++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCSSCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CccccccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 345679999999999998 56678999999999999999999877788999999999999999998888889999999
Q ss_pred CcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC-Cccccccccccc-hhhcccCcCCCCCchhhhhhhhh----HH
Q 011101 251 LTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYL----LE 323 (493)
Q Consensus 251 L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~-~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L----~~ 323 (493)
|++|++++|.+++..+..+... +|++|++++|.+.+ .+|..++++..+ +|++++|.+.+..+..++.+.+| +.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9999999999985444345555 99999999999987 468899998888 99999999998888888888888 77
Q ss_pred HHhccccccCCCcccccCCCCCcEEEecCCC-------------------------------------------------
Q 011101 324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR------------------------------------------------- 354 (493)
Q Consensus 324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~------------------------------------------------- 354 (493)
|++++|.+.+..+..+... +|+.|++++|.
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 8888888886666555444 56666666652
Q ss_pred ---------CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCc
Q 011101 355 ---------LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC 425 (493)
Q Consensus 355 ---------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~ 425 (493)
+.+..+..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|.++.++. ..+++|+.|++++|.
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCc
Confidence 22333444555566666666666665 455555555 66666666666665443 245555555555555
Q ss_pred CCC
Q 011101 426 ILD 428 (493)
Q Consensus 426 l~~ 428 (493)
+..
T Consensus 337 ~~~ 339 (570)
T 2z63_A 337 GGN 339 (570)
T ss_dssp SCC
T ss_pred ccc
Confidence 443
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.9e-25 Score=219.16 Aligned_cols=238 Identities=19% Similarity=0.236 Sum_probs=169.7
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|++++|.+++ ++. +..+++|++|++++|.++. + ..+.++++|++|++++|.+++. +. +..+++|+
T Consensus 65 ~~~L~~L~l~~n~i~~----~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~ 135 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD----ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY 135 (347)
T ss_dssp CTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred cCCccEEEccCCcccc----chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence 4567788888877776 333 7777788888888887775 3 3577778888888888877543 32 67777888
Q ss_pred EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (493)
+|++++|.....++......+|++|++++|.+.+..+ +..+..+ +|++++|.+.+. +. +..+++|+.|++++|.+
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCC
Confidence 8888877655455442223378888888887765433 5666666 778888877643 32 67777788888888877
Q ss_pred cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcccc
Q 011101 332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR 411 (493)
Q Consensus 332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 411 (493)
.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. ..+..+++|++|++++|+++++ +.+.
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~ 284 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLN 284 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGG
T ss_pred CCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhc
Confidence 75433 6777888888888888874 333 77788888888888888753 4577788888888888888876 4577
Q ss_pred CCCCCCEEEeeCCcCCCCC
Q 011101 412 KLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 412 ~l~~L~~L~L~~N~l~~lp 430 (493)
.+++|+.|++++|.+++.+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp GCTTCSEEECCSSCCCGGG
T ss_pred CCCCCCEEECcCCcCCCcC
Confidence 7888888888888877643
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.1e-25 Score=239.76 Aligned_cols=124 Identities=23% Similarity=0.193 Sum_probs=105.8
Q ss_pred CcCCCCCchhhhhhhhhHHHHhcccccc-CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101 305 NEFTGPIPSSIGRAKYLLEVLFLNNFFT-GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV 383 (493)
Q Consensus 305 n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 383 (493)
|.+.+..+..+..++.|+.|++++|.+. +..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred cccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 3333334445556677888899998754 456788999999999999999999888999999999999999999999888
Q ss_pred chhhcCCCCCcEEeeeCCcCCCCCc-cccCC-CCCCEEEeeCCcCCC
Q 011101 384 PEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL-IKRKVLDVRMNCILD 428 (493)
Q Consensus 384 p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l-~~L~~L~L~~N~l~~ 428 (493)
+..+..+++|++|||++|+|+++++ .+..+ .+|++|+|++|.+..
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 8899999999999999999999866 67777 689999999999875
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.1e-24 Score=225.31 Aligned_cols=228 Identities=19% Similarity=0.185 Sum_probs=193.7
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|++++|.+++ ++ .+..+++|++|++++|++++. + ++.+++|++|++++|.+++. + +.++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~----~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC----CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred cCCCCEEEccCCCccc----Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 4679999999999998 45 689999999999999999974 3 88999999999999999864 3 88999999
Q ss_pred EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF 330 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 330 (493)
+|++++|.+++ ++ +... +|++|++++|++++. .++.+..+ +|++++|...+.+ .+..+++|++|++++|.
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 99999999985 44 4444 999999999999874 37777777 8999999766666 47888999999999999
Q ss_pred ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccc
Q 011101 331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC 410 (493)
Q Consensus 331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~ 410 (493)
+++ ++ +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|+|++++ +
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~ 250 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--V 250 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--H
Confidence 996 44 78899999999999999964 47889999999999999997 55 788999999999999999985 4
Q ss_pred cCCCCCCEEEeeCCcCCCCC
Q 011101 411 RKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 411 ~~l~~L~~L~L~~N~l~~lp 430 (493)
..+++|+.|++++|.++.+.
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCC
T ss_pred HHCCCCCEEeccCCCCCEEE
Confidence 57788888888888887764
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.7e-26 Score=238.49 Aligned_cols=223 Identities=16% Similarity=0.089 Sum_probs=178.3
Q ss_pred cchhhhCCC----cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc
Q 011101 193 LSDFLEKLE----DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE 268 (493)
Q Consensus 193 ~~~~l~~l~----~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 268 (493)
++..+..+. +|++|+|++|.+++..+..|+.+++|++|+|++|.+++..+ |..+++|++|+|++|.+++ ++.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLV- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEE-
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCC-
Confidence 444454444 78888888888887777788888888888888888876554 7788888888888888773 221
Q ss_pred ccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCccccc-CCCCCc
Q 011101 269 IFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIG-FLSNST 346 (493)
Q Consensus 269 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~ 346 (493)
..+|++|++++|.+.+..+..+ ..+ +|++++|.+++..+..++.+++|+.|+|++|.+++..+..+. .+++|+
T Consensus 98 --~~~L~~L~L~~N~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEECCC---SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred --CCCcCEEECcCCcCCCCCcccc---CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 2578888888888876555433 334 788888888887788888889999999999999987777775 789999
Q ss_pred EEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC
Q 011101 347 VFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426 (493)
Q Consensus 347 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l 426 (493)
+|+|++|.+++. + .+..+++|++|+|++|.|++ ++..+..+++|+.|+|++|.|++++..+..+++|+.|++++|.+
T Consensus 173 ~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 173 HLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred EEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 999999999854 3 33468899999999999986 44558889999999999999999888888899999999999998
Q ss_pred C
Q 011101 427 L 427 (493)
Q Consensus 427 ~ 427 (493)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 8
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7.8e-25 Score=227.39 Aligned_cols=238 Identities=23% Similarity=0.329 Sum_probs=128.7
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|++++|.+++ ++. +..+++|++|++++|.+++..+ ++++++|++|++++|.+++..+ +.++++|+
T Consensus 67 l~~L~~L~Ls~n~l~~----~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTD----ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hcCCCEEECCCCccCC----chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCC
Confidence 4677888888888776 333 7777788888888777775443 7777777777777777764322 66677777
Q ss_pred EEEcccccCCCCCCcc--------------------ccc-cccCEEEccCccCCCCccccccccccc-hhhcccCcCCCC
Q 011101 253 FLDLRFNSFSGPVPAE--------------------IFY-LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGP 310 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~--------------------~~~-~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~ 310 (493)
+|++++|.+.+ ++.. +.. .+|++|++++|.+.+. ..+..+..+ +|++++|.+.+.
T Consensus 138 ~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 138 RLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred EEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 77777776653 2210 111 1556666666665432 123344333 445555544433
Q ss_pred Cc--------------------hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCC
Q 011101 311 IP--------------------SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370 (493)
Q Consensus 311 ~p--------------------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 370 (493)
.+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+
T Consensus 215 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 290 (466)
T 1o6v_A 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALT 290 (466)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccC
Confidence 22 233444444444444444443222 44445555555555555432 21 44455555
Q ss_pred EEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC
Q 011101 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 371 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l 429 (493)
+|+|++|++++..+ +..+++|+.|+|++|+++++.+ +..+++|+.|++++|.++++
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc
Confidence 55555555543322 4445555555555555555433 44555555555555555554
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9.7e-25 Score=226.69 Aligned_cols=236 Identities=24% Similarity=0.333 Sum_probs=164.3
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|+++++++.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|+
T Consensus 45 l~~l~~L~l~~~~i~~----l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHTCCEEECCSSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccccEEecCCCCCcc----Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 3579999999999887 55 48889999999999999997544 9999999999999999976544 89999999
Q ss_pred EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcc-------------------ccccccccc-hhhcccCcCCCCC
Q 011101 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLP-------------------ENIGSTGAL-YVTFANNEFTGPI 311 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-------------------~~~~~~~~l-~L~l~~n~l~~~~ 311 (493)
+|+|++|.+++ ++. +... +|++|++++|.+.+... ..+..+..+ +|++++|.+.+.
T Consensus 116 ~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 116 GLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp EEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred EEECCCCCCCC-ChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-
Confidence 99999999984 444 4443 99999999998875311 124445556 899999998754
Q ss_pred chhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCC
Q 011101 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP 391 (493)
Q Consensus 312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 391 (493)
..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ +..++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 358888999999999999886544 5556666666666666663 2 234555555555555555554332 44444
Q ss_pred CCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101 392 KLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 392 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
+|+.|++++|+++++++ +..+++|+.|++++|.+++
T Consensus 266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLED 301 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence 45555555554444432 3334444444444444333
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.4e-26 Score=227.82 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=189.2
Q ss_pred ceEEEEcCCCCcCCCCCccchhhh-------CCCcCcEEEccCCcCCCccCccc--CCCCCCCEEECcCCCCCCCCcccc
Q 011101 175 AVAGVDFNGYRFNGPDFSLSDFLE-------KLEDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKLFGGFPMEV 245 (493)
Q Consensus 175 ~l~~L~L~~n~l~~~~~~~~~~l~-------~l~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~l 245 (493)
.++.|+|++|.+... .++..+. .+++|++|++++|++++.+|..+ ..+++|++|+|++|.+++. |..+
T Consensus 64 ~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 140 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAA--RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL 140 (312)
T ss_dssp HHHHCCCCEEEEEEE--ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred HHhhcccccccccCC--CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence 488899999998531 5676665 79999999999999999888876 8999999999999999877 7888
Q ss_pred cCC-----CCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCC--ccccc--cccccc-hhhcccCcCCC--CCc
Q 011101 246 VNI-----KNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQN--LPENI--GSTGAL-YVTFANNEFTG--PIP 312 (493)
Q Consensus 246 ~~l-----~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~--~p~~~--~~~~~l-~L~l~~n~l~~--~~p 312 (493)
..+ ++|++|+|++|.+.+..+..+... +|++|+|++|++.+. .+..+ +.+..+ +|++++|.+.+ .++
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 777 999999999999997776777766 999999999998765 33344 677777 99999999983 222
Q ss_pred -hhhhhhhhhHHHHhccccccCCCc-ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101 313 -SSIGRAKYLLEVLFLNNFFTGCLP-YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL 390 (493)
Q Consensus 313 -~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 390 (493)
..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|.++ .+|..+. ++|++|+|++|+|++. |. +..+
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l 295 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL 295 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence 334567899999999999998774 55677899999999999999 7888776 8999999999999966 65 8899
Q ss_pred CCCcEEeeeCCcCCCC
Q 011101 391 PKLVNLSLSYNYFTQV 406 (493)
Q Consensus 391 ~~L~~L~Ls~N~l~~~ 406 (493)
++|++|+|++|.|++.
T Consensus 296 ~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEEEEECTTCTTTCC
T ss_pred CCCCEEeccCCCCCCC
Confidence 9999999999999864
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-26 Score=228.91 Aligned_cols=240 Identities=16% Similarity=0.164 Sum_probs=204.6
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|+|++|.+++ ..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +...++|+
T Consensus 33 ~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCC
T ss_pred CCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcC
Confidence 3589999999999999 677889999999999999999987654 8999999999999999864 33458999
Q ss_pred EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhh-hhhhhHHHHhcccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIG-RAKYLLEVLFLNNF 330 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~ 330 (493)
+|++++|.+++..+.. ..+|++|++++|++.+..+..++.+..+ +|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 103 ~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 9999999998544332 3489999999999998878888888888 999999999987777764 78999999999999
Q ss_pred ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCC-C-CCc
Q 011101 331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT-Q-VGP 408 (493)
Q Consensus 331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~-~~~ 408 (493)
+++. + ....+++|++|+|++|.+++ ++..+..+++|++|+|++|+|+ .+|..+..+++|+.|++++|.++ + ++.
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred Cccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 9854 3 33458999999999999994 5666889999999999999999 57888999999999999999999 3 444
Q ss_pred cccCCCCCCEEEeeCC-cCCC
Q 011101 409 ECRKLIKRKVLDVRMN-CILD 428 (493)
Q Consensus 409 ~~~~l~~L~~L~L~~N-~l~~ 428 (493)
.+..+++|+.|++++| .+++
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHS
T ss_pred HHhccccceEEECCCchhccC
Confidence 6788889999998844 4444
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.9e-26 Score=239.23 Aligned_cols=234 Identities=16% Similarity=0.164 Sum_probs=202.3
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+|+.|+|++|.+++ ..+..|..+++|++|+|++|.+++..+ |..+++|++|+|++|.|++. ...++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCC
T ss_pred CCCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcC
Confidence 3589999999999999 677899999999999999999997665 99999999999999999643 2348999
Q ss_pred EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhh-hhhhhHHHHhcccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIG-RAKYLLEVLFLNNF 330 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~ 330 (493)
+|+|++|.+++..+.. ..+|++|+|++|.+.+..+..++.+..+ +|++++|.+++..+..+. .+++|+.|+|++|.
T Consensus 103 ~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999999654432 2489999999999999888899988888 999999999998888886 78999999999999
Q ss_pred ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCC--CCCc
Q 011101 331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT--QVGP 408 (493)
Q Consensus 331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~~ 408 (493)
+++. + .+..+++|++|+|++|.+++ ++..+..+++|++|+|++|.|++ +|..+..+++|+.|++++|.+. .++.
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 9965 3 34469999999999999996 55568899999999999999994 7888999999999999999998 3444
Q ss_pred cccCCCCCCEEEee
Q 011101 409 ECRKLIKRKVLDVR 422 (493)
Q Consensus 409 ~~~~l~~L~~L~L~ 422 (493)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 66777777777765
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.5e-24 Score=224.44 Aligned_cols=234 Identities=21% Similarity=0.200 Sum_probs=128.7
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|++++|.+++ ++ ++.+++|++|++++|++++ ++ ++.+++|++|++++|.+++. .+..+++|+
T Consensus 84 l~~L~~L~Ls~N~l~~----~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~ 151 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTN----LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLT 151 (457)
T ss_dssp CTTCSEEECCSSCCSC----CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCC
T ss_pred CCCCCEEECcCCCCce----ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCC
Confidence 4456666666666655 22 5556666666666666654 22 55556666666666665542 244555555
Q ss_pred EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF 330 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 330 (493)
+|++++|...+.++ +... +|++|++++|++++ ++ ++.+..+ +|++++|.+++. .++.+++|++|++++|+
T Consensus 152 ~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 152 ELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp EEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSC
T ss_pred EEECCCCCcccccc--cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCc
Confidence 55555554333331 2221 45555555555543 22 3333333 444444444432 24444444444444444
Q ss_pred ccCCCcccccCCCCCcEEEecCCCCCCCCccc-----------------------------ccCCCCCCEEEcccCCCCC
Q 011101 331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHS-----------------------------FGCLSSMQYLNLAMNQFYG 381 (493)
Q Consensus 331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-----------------------------l~~l~~L~~L~Ls~N~l~~ 381 (493)
+++ +| +..+++|++|++++|.+++..+.. +..+++|++|+|++|.+.+
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCC
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccc
Confidence 443 22 344444444444444444322221 2345667777777776555
Q ss_pred Ccch--------hhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC
Q 011101 382 PVPE--------IVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 382 ~~p~--------~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
.+|. .+..+++|+.|++++|+|+++ .+..+++|+.|++++|+|++++.
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~l~~ 356 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSS 356 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCBCTT
T ss_pred eeccCCCcceEechhhcccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCCccc
Confidence 4443 245567888999999999887 37888999999999999988753
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.2e-24 Score=209.88 Aligned_cols=220 Identities=18% Similarity=0.104 Sum_probs=143.8
Q ss_pred EEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccc
Q 011101 179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRF 258 (493)
Q Consensus 179 L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 258 (493)
++..+.++.. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 12 ~~c~~~~l~~----ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 12 YQCMELNFYK----IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EECTTSCCSS----CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEecCCCccc----cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 3444444444 444332 3577777777777765555677777777777777777665555667777777777777
Q ss_pred ccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC-Cc
Q 011101 259 NSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC-LP 336 (493)
Q Consensus 259 n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p 336 (493)
|.+++..+..+... +|++|++++|.+.+..+. .+..+++|++|++++|.+.+. ++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----------------------PIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-----------------------CCTTCTTCCEEECCSSCCCCCCCC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCch-----------------------hcccCCCCCEEECcCCccceecCc
Confidence 77765444444444 677777776666532221 234445556666666666542 46
Q ss_pred ccccCCCCCcEEEecCCCCCCCCcccccCCCCCC----EEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcc-cc
Q 011101 337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ----YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE-CR 411 (493)
Q Consensus 337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~ 411 (493)
..+..+++|++|+|++|++++..+..+..+.+|+ +|++++|.+++..+. .....+|+.|+|++|+|++++.. +.
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhc
Confidence 6777777888888888888766666666555555 788888888754433 33445788888888888887664 57
Q ss_pred CCCCCCEEEeeCCcCCC
Q 011101 412 KLIKRKVLDVRMNCILD 428 (493)
Q Consensus 412 ~l~~L~~L~L~~N~l~~ 428 (493)
.+++|+.|++++|.++.
T Consensus 222 ~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCCSCCEEECCSSCBCC
T ss_pred ccccccEEEccCCcccc
Confidence 78888888888888875
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=4e-24 Score=207.98 Aligned_cols=110 Identities=16% Similarity=-0.021 Sum_probs=61.9
Q ss_pred hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101 318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS 397 (493)
Q Consensus 318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 397 (493)
+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 33444444444444433344455556666666666666644444455566666666666666644444445566666666
Q ss_pred eeCCcCCCCCccccCCCCCCEEEeeCCcCC
Q 011101 398 LSYNYFTQVGPECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 398 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~ 427 (493)
|++|+|+.++..+..+.+|+.|+|++|.+.
T Consensus 179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 666666666555555556666666666554
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=7e-25 Score=226.73 Aligned_cols=232 Identities=21% Similarity=0.216 Sum_probs=100.7
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCC-------------CEEECcCCCCCCC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFL-------------YELDVSNNKLFGG 240 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~ 240 (493)
.+++.|++++|++ + .+|..++++++|++|++++|.+++.+|..++++.+| ++|++++|.+++
T Consensus 11 ~~L~~L~l~~n~l-~---~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-T---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccchhhhcccCch-h---hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 5677777777777 4 477777777777777777777777777766666543 666666666643
Q ss_pred CcccccCCCCCcEEEcccccCCCCCCcccc------------------ccccCEEEccCccCCCCccccccccccc-hhh
Q 011101 241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIF------------------YLDLDVLFLNNNKFSQNLPENIGSTGAL-YVT 301 (493)
Q Consensus 241 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------------------~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~ 301 (493)
+|.. .++|++|++++|.+++ +|..+. ..+|++|++++|++.+ +| .++.+..+ +|+
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 2221 2455555555555553 333210 0244444444444443 33 24444444 444
Q ss_pred cccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 011101 302 FANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381 (493)
Q Consensus 302 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 381 (493)
+++|.+++ +|..+ .+|++|++++|.+++ ++ .+..+++|++|++++|.+++ +|... .+|++|++++|+++
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-
Confidence 45544442 33222 244444444444443 33 34445555555555555442 32221 24455555555444
Q ss_pred CcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC
Q 011101 382 PVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 382 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
.+| .+..+++|++|++++|++++++.. +.+|+.|++++|.++++|.
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCC
T ss_pred ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCc
Confidence 333 244555555555555555554321 2344445555444444443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-23 Score=202.77 Aligned_cols=208 Identities=16% Similarity=0.071 Sum_probs=159.6
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 251 (493)
...+++.|++++|++++ ..+..+..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|
T Consensus 26 l~~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp SCTTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 34679999999999998 555689999999999999999998777789999999999999999998888899999999
Q ss_pred cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCC-ccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101 252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQN-LPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNN 329 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~-~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 329 (493)
++|++++|.+.+..+..+... +|++|++++|.+.+. +|..+ ..+++|++|++++|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----------------------~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----------------------SNLTNLEHLDLSSN 159 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-----------------------GGCTTCCEEECCSS
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-----------------------ccCCCCCEEECCCC
Confidence 999999999996555455555 999999999998752 34444 44455555555555
Q ss_pred cccCCCcccccCCCCCc----EEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101 330 FFTGCLPYEIGFLSNST----VFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 330 ~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
.+++..+..+..+.+|+ +|++++|.+++..+..+. ..+|++|+|++|++++..+..+..+++|+.|+|++|.++.
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 55544444444444444 788888888754444443 3478888888888886655666778888888888888876
Q ss_pred C
Q 011101 406 V 406 (493)
Q Consensus 406 ~ 406 (493)
.
T Consensus 239 ~ 239 (276)
T 2z62_A 239 S 239 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.2e-24 Score=213.83 Aligned_cols=204 Identities=17% Similarity=0.066 Sum_probs=132.0
Q ss_pred CcCcEEEccCCcCCCccCccc--CCCCCCCEEECcCCCCCCCCc----ccccCCCCCcEEEcccccCCCCCCcccccc-c
Q 011101 201 EDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKLFGGFP----MEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-D 273 (493)
Q Consensus 201 ~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~ 273 (493)
++|++|++++|.+++..+..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+..+..+... +
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555665555555555554 555555566666555554333 223345555555555555554444444333 5
Q ss_pred cCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcc----cccCCCCCcEEE
Q 011101 274 LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPY----EIGFLSNSTVFD 349 (493)
Q Consensus 274 L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~ 349 (493)
|++|+|++|++.+... -.....+..+++|++|++++|+++ .++. .+..+++|++|+
T Consensus 171 L~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 171 LTSLDLSDNPGLGERG-------------------LMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp CCEEECCSCTTCHHHH-------------------HHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEE
T ss_pred CCEEECCCCCCccchh-------------------hhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEE
Confidence 5555555555432100 000112245667777777777776 2222 246778999999
Q ss_pred ecCCCCCCCCcccccCC---CCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC
Q 011101 350 VGNNRLTGPIPHSFGCL---SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426 (493)
Q Consensus 350 Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l 426 (493)
|++|.+++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++++. +..+++|+.|++++|.|
T Consensus 231 Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 231 LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 99999997777777766 68999999999998 6677664 789999999999998743 67889999999999988
Q ss_pred CC
Q 011101 427 LD 428 (493)
Q Consensus 427 ~~ 428 (493)
+.
T Consensus 307 ~~ 308 (310)
T 4glp_A 307 LV 308 (310)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2.1e-24 Score=230.43 Aligned_cols=221 Identities=21% Similarity=0.219 Sum_probs=106.2
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.|+|++|.++. ++. .+++|++|+|++|+|++ +|. .+++|++|+|++|.+++ ++. .+.+|++
T Consensus 61 ~~L~~L~L~~N~l~~----lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTS----LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSC----CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCE
T ss_pred CCCcEEEecCCCCCC----CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCE
Confidence 344555555555444 332 34455555555555542 332 34555555555555542 222 3455555
Q ss_pred EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
|+|++|.++ .+|..+ .+|++|+|++|.+.+ ++..+.++ ..|++++|.+++ ++ ..+++|+.|++++|.+++
T Consensus 126 L~L~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~~~~L--~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 126 LWIFGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPALPSEL--CKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp EECCSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCCCTTC--CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred EECCCCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCccCCC--CEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 555555555 233321 356666666666553 22222111 133344444432 22 122455555555555553
Q ss_pred CCccccc-----------------CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEE
Q 011101 334 CLPYEIG-----------------FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNL 396 (493)
Q Consensus 334 ~~p~~l~-----------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 396 (493)
++..+. .+++|++|+|++|.+++ +| ..+++|++|+|++|+|+ .+|. .+++|+.|
T Consensus 196 -l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L 266 (622)
T 3g06_A 196 -LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL 266 (622)
T ss_dssp -CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred -CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence 222110 12445555555555552 33 23355566666666555 2333 34556666
Q ss_pred eeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101 397 SLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 397 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
+|++|+|+.++..+..+++|+.|+|++|.|++
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 66666666555555666666666666666554
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.1e-23 Score=197.47 Aligned_cols=199 Identities=23% Similarity=0.279 Sum_probs=155.4
Q ss_pred cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccc-ccc-ccCEEEc
Q 011101 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI-FYL-DLDVLFL 279 (493)
Q Consensus 202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~-~L~~L~L 279 (493)
+++.+++++++++. +|..+. .+|++|+|++|.+++..+..|.++++|++|+|++|.++ .++..+ ... +|++|+|
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 46778888888873 555443 57888888888887666667788888888888888777 343332 222 5666666
Q ss_pred cCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCC
Q 011101 280 NNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359 (493)
Q Consensus 280 ~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 359 (493)
++|.+. +..+..|..+++|++|+|++|.+++..
T Consensus 93 ~~n~l~-----------------------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 93 TDNKLQ-----------------------------------------------ALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp CSSCCC-----------------------------------------------CCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcCC-----------------------------------------------cCCHhHcccccCCCEEECCCCccCeeC
Confidence 655543 222344567889999999999999877
Q ss_pred cccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC----CC
Q 011101 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ----RS 434 (493)
Q Consensus 360 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~ 434 (493)
+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+|+++++ .+..+++|++|++++|.|++++.. ..
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc
Confidence 7888999999999999999997766778999999999999999999876 578899999999999999999864 24
Q ss_pred chhhcccccCCCCCCCC
Q 011101 435 REECGKFFSESKKCPNE 451 (493)
Q Consensus 435 ~~~~~~~~~~~~~c~~~ 451 (493)
.+..+.+.+|++.|.+.
T Consensus 206 ~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 206 KLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCCEEECCSSCBCCSSS
T ss_pred CCCEEEecCCCeeCCCc
Confidence 45667888999999754
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.7e-23 Score=213.79 Aligned_cols=226 Identities=25% Similarity=0.353 Sum_probs=135.7
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.|++++|.+++ +| .++.+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+.++++|++
T Consensus 131 ~~L~~L~L~~n~l~~----lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK----LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCC----Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence 457777777777766 44 46777777777777777764 44332 467777777777764 44 4677777777
Q ss_pred EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (493)
|++++|.+++ +|... .+|++|++++|.+. .+| .++.+..+ +|++++|.+.+ +|.. +.+|++|++++|.++
T Consensus 200 L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 200 IYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp EECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred EECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 7777777763 44322 26677777777666 455 35555555 66666666663 3332 245555556666555
Q ss_pred CCCcccccCCCCCcEEEecCCCCCC--CCcccc-------------cCC-CCCCEEEcccCCCCCCcchhhcCCCCCcEE
Q 011101 333 GCLPYEIGFLSNSTVFDVGNNRLTG--PIPHSF-------------GCL-SSMQYLNLAMNQFYGPVPEIVCQLPKLVNL 396 (493)
Q Consensus 333 ~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l-------------~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 396 (493)
+ ++.. .++|++|++++|.+++ .++..+ ..+ ++|++|++++|++++ +|.. +++|++|
T Consensus 271 ~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 271 D-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred c-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 3 3322 2444455555544443 121111 112 467777777777774 4443 4677778
Q ss_pred eeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCC
Q 011101 397 SLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 397 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp 430 (493)
++++|++++++. .+.+|++|++++|.++++|
T Consensus 343 ~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 343 IASFNHLAEVPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSSCC
T ss_pred ECCCCccccccc---hhhhccEEECCCCCCCcCC
Confidence 888887777655 4677777888877777643
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6e-25 Score=220.72 Aligned_cols=249 Identities=18% Similarity=0.155 Sum_probs=190.2
Q ss_pred EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccC----cccCCCC-CCCEEECcCCCCCCCCcccccCC----
Q 011101 178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIP----KMTSKLK-FLYELDVSNNKLFGGFPMEVVNI---- 248 (493)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l---- 248 (493)
.+++++|++++ .++..+....+|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSN---PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCC---HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchH---HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 36788888888 777777777779999999999887655 6677787 89999999999887777767664
Q ss_pred -CCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCccccccc-----cccc-hhhcccCcCCCCCchhh
Q 011101 249 -KNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPENIGS-----TGAL-YVTFANNEFTGPIPSSI 315 (493)
Q Consensus 249 -~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~~~~-----~~~l-~L~l~~n~l~~~~p~~l 315 (493)
++|++|+|++|.+++..+..+.. .+|++|+|++|.+.+.....+.. .+.+ +|++++|.+.......+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 88999999999988666554432 37999999999988766555433 2344 88999998886544443
Q ss_pred ----hhhh-hhHHHHhccccccCCCccccc----CC-CCCcEEEecCCCCCCC----CcccccC-CCCCCEEEcccCCCC
Q 011101 316 ----GRAK-YLLEVLFLNNFFTGCLPYEIG----FL-SNSTVFDVGNNRLTGP----IPHSFGC-LSSMQYLNLAMNQFY 380 (493)
Q Consensus 316 ----~~l~-~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~ 380 (493)
..+. +|++|+|++|.+++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 4443 899999999999876665443 44 6999999999999863 4445554 458999999999998
Q ss_pred CCcc----hhhcCCCCCcEEeeeCCcCCCCCc--------cccCCCCCCEEEeeCCcCCCC
Q 011101 381 GPVP----EIVCQLPKLVNLSLSYNYFTQVGP--------ECRKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 381 ~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~--------~~~~l~~L~~L~L~~N~l~~l 429 (493)
+... ..+..+++|+.|+|++|.+.++.. .+..+.+|+.||+++|.|...
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 7654 334667899999999999665432 467788899999999998764
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3e-25 Score=224.82 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=169.8
Q ss_pred cchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCC---CCCCcccc-------cCCCCCcEEEccc
Q 011101 193 LSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKL---FGGFPMEV-------VNIKNLTFLDLRF 258 (493)
Q Consensus 193 ~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l-------~~l~~L~~L~Ls~ 258 (493)
+...+..+++|++|+|++|.++.. +...+..+++|++|+|++|.+ ++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455666777777777777777654 223466777777777777533 33444443 5677777777777
Q ss_pred ccCCCC----CCcccccc-ccCEEEccCccCCCCccccccc----c---------ccc-hhhcccCcCC-CCCc---hhh
Q 011101 259 NSFSGP----VPAEIFYL-DLDVLFLNNNKFSQNLPENIGS----T---------GAL-YVTFANNEFT-GPIP---SSI 315 (493)
Q Consensus 259 n~l~~~----~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~----~---------~~l-~L~l~~n~l~-~~~p---~~l 315 (493)
|.+.+. ++..+... +|++|+|++|.+.+..+..+.. + ..+ +|++++|.+. +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 777752 44444333 7777777777775433333322 2 344 7777777776 3344 466
Q ss_pred hhhhhhHHHHhccccccC-----CCcccccCCCCCcEEEecCCCCC----CCCcccccCCCCCCEEEcccCCCCCC----
Q 011101 316 GRAKYLLEVLFLNNFFTG-----CLPYEIGFLSNSTVFDVGNNRLT----GPIPHSFGCLSSMQYLNLAMNQFYGP---- 382 (493)
Q Consensus 316 ~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~---- 382 (493)
..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ +.++..+..+++|++|+|++|.|++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 677889999999998873 23347788999999999999996 46788888999999999999999865
Q ss_pred cchhhc--CCCCCcEEeeeCCcCCC-----CCccc-cCCCCCCEEEeeCCcCCCCC
Q 011101 383 VPEIVC--QLPKLVNLSLSYNYFTQ-----VGPEC-RKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 383 ~p~~l~--~l~~L~~L~Ls~N~l~~-----~~~~~-~~l~~L~~L~L~~N~l~~lp 430 (493)
++..+. .+++|+.|+|++|.|++ ++..+ .++++|+.|++++|.|++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 456663 38999999999999998 55555 56899999999999998755
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.5e-23 Score=200.47 Aligned_cols=204 Identities=20% Similarity=0.149 Sum_probs=127.4
Q ss_pred hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccC
Q 011101 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLD 275 (493)
Q Consensus 197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~ 275 (493)
+..+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++..+..+... +|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4455566666666666553 2 2355566666666666666532 355566666666666666664333333333 566
Q ss_pred EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101 276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL 355 (493)
Q Consensus 276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 355 (493)
+|+|++|++.+. .+..+..+++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus 113 ~L~L~~n~l~~~-----------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 113 ELVLVENQLQSL-----------------------PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EEECTTSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCcc-----------------------CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 666666655432 223344555666666666666655555566777788888888887
Q ss_pred CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC-CCCCC
Q 011101 356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD-LPNQR 433 (493)
Q Consensus 356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~~ 433 (493)
++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.+. +++|+.|+++.|.+++ +|..+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcc
Confidence 766666667777888888888888776666677778888888888876543 4467777777777764 55543
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.6e-23 Score=196.13 Aligned_cols=190 Identities=21% Similarity=0.207 Sum_probs=136.2
Q ss_pred CCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCC
Q 011101 157 CNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK 236 (493)
Q Consensus 157 C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~ 236 (493)
|..|.|..|.. ..+.+++++++++. +|..+. .+|+.|+|++|.+++..+..|.++++|++|+|++|.
T Consensus 4 Cp~~~gC~C~~-------~~~~l~~~~~~l~~----~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 4 CETVTGCTCNE-------GKKEVDCQGKSLDS----VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp CHHHHSSEEEG-------GGTEEECTTCCCSS----CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCceEcCC-------CCeEEecCCCCccc----cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc
Confidence 33888999962 46789999999987 665554 589999999999998888889999999999999999
Q ss_pred CCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhh
Q 011101 237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSI 315 (493)
Q Consensus 237 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l 315 (493)
+++..+..|.++++|++|+|++|.+++..+..+... +|++|+|++|++.+
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------- 121 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS----------------------------- 121 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------------
T ss_pred CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-----------------------------
Confidence 988888888999999999999999885444444333 67777777666652
Q ss_pred hhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcE
Q 011101 316 GRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVN 395 (493)
Q Consensus 316 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 395 (493)
..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.
T Consensus 122 ------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 122 ------------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp ------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ------------------cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 12223344556666666666666444445666666666666666666555555666666666
Q ss_pred EeeeCCcCCCC
Q 011101 396 LSLSYNYFTQV 406 (493)
Q Consensus 396 L~Ls~N~l~~~ 406 (493)
|+|++|.++..
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 66666666554
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.3e-22 Score=197.38 Aligned_cols=199 Identities=19% Similarity=0.114 Sum_probs=149.2
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.+++++++++. +|..+. ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+ ...+++|++
T Consensus 10 ~~l~~l~~~~~~l~~----ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA----LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp TTCCEEECTTSCCSS----CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred CCccEEECCCCCCCc----CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 567778888887776 454442 577788888888877666777788888888888887764322 266777888
Q ss_pred EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (493)
|+|++|.++ .+|..+... +|++|+|++|++++ ..+..|..+++|++|++++|+++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-----------------------l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-----------------------LPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-----------------------CCSSTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-----------------------cCHHHHcCCCCCCEEECCCCCCC
Confidence 888887777 566555444 67777777777653 33345667777888888888888
Q ss_pred CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101 333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
+..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|+ .+|..+..+.+|+.|+|++|.+..
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 666667788899999999999998655556778899999999999998 677778888899999999998865
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.1e-23 Score=198.96 Aligned_cols=204 Identities=18% Similarity=0.098 Sum_probs=163.0
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|+++++.+.. ++ .+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++..+..|.++++|+
T Consensus 40 l~~L~~L~l~~~~i~~----~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS----VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCC----CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCccc----cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4679999999999887 33 588999999999999999863 4789999999999999999988888889999999
Q ss_pred EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (493)
+|+|++|.+++..+..+... +|++|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-----------------------GVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------------TTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH-----------------------HHhccCccCCEEECCCCCc
Confidence 99999999996655555554 99999999998874333 2345566777777777777
Q ss_pred cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cc
Q 011101 332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-EC 410 (493)
Q Consensus 332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~ 410 (493)
++..+..|..+++|++|++++|.+++..+..+..+++|++|+|++|.+.+. +++|+.|+++.|.+++..+ .+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 766666677888888888888888877777778888888888888887643 4568888888888887533 44
Q ss_pred cCC
Q 011101 411 RKL 413 (493)
Q Consensus 411 ~~l 413 (493)
+.+
T Consensus 243 ~~~ 245 (272)
T 3rfs_A 243 GSV 245 (272)
T ss_dssp SCB
T ss_pred ccc
Confidence 443
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.2e-22 Score=199.35 Aligned_cols=192 Identities=18% Similarity=0.232 Sum_probs=99.6
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|+++++++.. ++ .+..+++|++|++++|.+++..+ +..+++|++|+|++|.+++. ..+..+++|+
T Consensus 40 l~~L~~L~l~~~~i~~----l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT----IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred cCCcCEEEeeCCCccC----ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456777777776665 33 46667777777777777764332 66677777777777776542 2466666677
Q ss_pred EEEcccccCCCCCCccccc-cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101 253 FLDLRFNSFSGPVPAEIFY-LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (493)
+|+|++|.+++ ++. +.. .+|++|++++|.+.+. +. +..+++|++|++++|.+
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~------------------------~~-l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI------------------------SP-LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC------------------------GG-GGGCTTCCEEECCSSCC
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC------------------------cc-ccCCCCccEEEccCCcC
Confidence 77776666663 332 222 2556666655555421 11 33344444444444444
Q ss_pred cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101 332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
++. +. +..+++|++|++++|.+++ ++. +..+++|++|+|++|++++.. .+..+++|+.|+|++|.+++.
T Consensus 164 ~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 164 SDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred CCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 432 11 4444444444444444442 221 344444444444444444322 134444444444444444443
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=8.1e-25 Score=217.09 Aligned_cols=260 Identities=15% Similarity=0.152 Sum_probs=198.4
Q ss_pred CCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCC--CcCcEEEccCCcCCCccCcccCCCCCCCEEEC
Q 011101 155 DVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKL--EDLAIFHANSNNFTKSIPKMTSKLKFLYELDV 232 (493)
Q Consensus 155 ~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l--~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 232 (493)
..|..|.++.|+. ..++.+|++++.+.. ..+..+ .+++.|++++|.+.+..+. +..+++|++|+|
T Consensus 34 ~vc~~W~~~~~~~------~~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L 100 (336)
T 2ast_B 34 GVCKRWYRLASDE------SLWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDL 100 (336)
T ss_dssp SSCHHHHHHHTCS------TTSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEEC
T ss_pred HHHHHHHHHhcCc------hhheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEc
Confidence 4565788877652 347789999887664 456666 7899999999999877655 567899999999
Q ss_pred cCCCCCCC-CcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCc-cCCCC-ccccccccccc-hhhcccC-c
Q 011101 233 SNNKLFGG-FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNN-KFSQN-LPENIGSTGAL-YVTFANN-E 306 (493)
Q Consensus 233 s~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n-~l~~~-~p~~~~~~~~l-~L~l~~n-~ 306 (493)
++|.+++. ++..+..+++|++|+|++|.+++..+..+... +|++|+|++| .+++. ++..+..+..+ +|++++| .
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 99998755 77788899999999999999887777666655 8999999999 67653 55566777777 8889988 7
Q ss_pred CCCC-Cchhhhhhh-hhHHHHhccc--ccc-CCCcccccCCCCCcEEEecCCC-CCCCCcccccCCCCCCEEEcccCC-C
Q 011101 307 FTGP-IPSSIGRAK-YLLEVLFLNN--FFT-GCLPYEIGFLSNSTVFDVGNNR-LTGPIPHSFGCLSSMQYLNLAMNQ-F 379 (493)
Q Consensus 307 l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l 379 (493)
+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|+|++|. +
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 7753 566778888 9999999998 444 3456677788999999999998 776777788888999999999985 3
Q ss_pred CCCcchhhcCCCCCcEEeeeCCcCCCCCccccCC-CCCCEEEeeCCcCCCCC
Q 011101 380 YGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKL-IKRKVLDVRMNCILDLP 430 (493)
Q Consensus 380 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l-~~L~~L~L~~N~l~~lp 430 (493)
+......+..+++|+.|++++| ++.. .+..+ .+|+.|++++|.++++.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTT
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCcccc
Confidence 3222235778899999999998 4432 22233 23666678999988753
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=199.39 Aligned_cols=203 Identities=15% Similarity=0.130 Sum_probs=164.4
Q ss_pred cceEEEEcCCCCcCCCCCccchhh--hCCCcCcEEEccCCcCCCccC----cccCCCCCCCEEECcCCCCCCCCcccccC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFL--EKLEDLAIFHANSNNFTKSIP----KMTSKLKFLYELDVSNNKLFGGFPMEVVN 247 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l--~~l~~L~~L~L~~n~i~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 247 (493)
.+++.|++++|.+.+ ..+..+ ..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+++..+..|.+
T Consensus 91 ~~L~~L~l~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITG---TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBS---CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred CceeEEEeeCCEecc---chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 459999999999998 677777 899999999999999997544 44567999999999999999888899999
Q ss_pred CCCCcEEEcccccCCCC--CCccc--ccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCch-hhhhhhhh
Q 011101 248 IKNLTFLDLRFNSFSGP--VPAEI--FYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPS-SIGRAKYL 321 (493)
Q Consensus 248 l~~L~~L~Ls~n~l~~~--~p~~~--~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~-~l~~l~~L 321 (493)
+++|++|+|++|++.+. ++... ... +|++|+|++|+++. ++. .+. .+..+++|
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~--------------------~~~~l~~~l~~L 226 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG--------------------VCAALAAAGVQP 226 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH--------------------HHHHHHHHTCCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH--------------------HHHHHHhcCCCC
Confidence 99999999999998642 22222 222 78888888888752 111 111 24667888
Q ss_pred HHHHhccccccCCCcccccCC---CCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEee
Q 011101 322 LEVLFLNNFFTGCLPYEIGFL---SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL 398 (493)
Q Consensus 322 ~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 398 (493)
++|+|++|.+.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|+|++. |. +..+++|+.|+|
T Consensus 227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTL 301 (310)
T ss_dssp SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEEC
T ss_pred CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEEC
Confidence 899999999988777777776 69999999999999 6787764 7999999999999964 33 677899999999
Q ss_pred eCCcCCC
Q 011101 399 SYNYFTQ 405 (493)
Q Consensus 399 s~N~l~~ 405 (493)
++|.|+.
T Consensus 302 ~~N~l~~ 308 (310)
T 4glp_A 302 DGNPFLV 308 (310)
T ss_dssp SSTTTSC
T ss_pred cCCCCCC
Confidence 9999875
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2e-22 Score=190.10 Aligned_cols=195 Identities=16% Similarity=0.079 Sum_probs=128.5
Q ss_pred cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCC-CCCCCcccccCCCCCcEEEccc-ccCCCCCCcccccc-ccCEEE
Q 011101 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK-LFGGFPMEVVNIKNLTFLDLRF-NSFSGPVPAEIFYL-DLDVLF 278 (493)
Q Consensus 202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~-~L~~L~ 278 (493)
+|++|++++|++++..+..|.++++|++|++++|. ++...+..|.++++|++|+|++ |.+++..+..+... +|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888776655577777888888888886 7655555777778888888877 77774333444443 777777
Q ss_pred ccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhH---HHHhccc-cccCCCcccccCCCCCc-EEEecCC
Q 011101 279 LNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL---EVLFLNN-FFTGCLPYEIGFLSNST-VFDVGNN 353 (493)
Q Consensus 279 L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N 353 (493)
+++|.+.+ +|. +..+.+|+ +|++++| .+++..+..|..+++|+ +|++++|
T Consensus 112 l~~n~l~~-lp~------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKM-FPD------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEECCCS-CCC------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCCcc-ccc------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 77777653 221 22222333 5666666 55544445566777777 7777777
Q ss_pred CCCCCCcccccCCCCCCEEEcccCC-CCCCcchhhcCC-CCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCC
Q 011101 354 RLTGPIPHSFGCLSSMQYLNLAMNQ-FYGPVPEIVCQL-PKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMN 424 (493)
Q Consensus 354 ~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N 424 (493)
+++ .++.......+|++|+|++|+ +++..+..+..+ ++|+.|++++|+|++++.. .+.+|+.|+++++
T Consensus 167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 777 444433333677777777774 765545666777 7777788877777776554 5667777777665
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.8e-21 Score=190.98 Aligned_cols=200 Identities=20% Similarity=0.263 Sum_probs=169.0
Q ss_pred hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCE
Q 011101 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDV 276 (493)
Q Consensus 197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~ 276 (493)
+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++ ++......+|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-chhhcCCCCCCE
Confidence 5568899999999999985 44 68999999999999999975443 8999999999999999984 553223339999
Q ss_pred EEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCC
Q 011101 277 LFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356 (493)
Q Consensus 277 L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 356 (493)
|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 112 L~l~~n~l~~~------------------------~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 112 LDLTSTQITDV------------------------T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp EECTTSCCCCC------------------------G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCc------------------------h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 99999988631 1 25677889999999999986433 889999999999999999
Q ss_pred CCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCCC
Q 011101 357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQR 433 (493)
Q Consensus 357 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~ 433 (493)
+ ++. +..+++|++|+|++|++++..+ +..+++|+.|+|++|+|+++++ +..+++|+.|++++|.|+..|..+
T Consensus 165 ~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 165 D-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp C-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred C-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 5 444 8899999999999999986543 7889999999999999999874 889999999999999999987644
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.6e-24 Score=215.43 Aligned_cols=232 Identities=18% Similarity=0.188 Sum_probs=188.5
Q ss_pred ccceEEEEcCCCCcCCCCCccc----hhhhCCCcCcEEEccCCcC---CCccCccc-------CCCCCCCEEECcCCCCC
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLS----DFLEKLEDLAIFHANSNNF---TKSIPKMT-------SKLKFLYELDVSNNKLF 238 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~----~~l~~l~~L~~L~L~~n~i---~~~~p~~~-------~~l~~L~~L~Ls~n~l~ 238 (493)
..+++.|+|++|.++. ..+ ..+..+++|++|+|++|.+ ++.+|..+ ..+++|++|+|++|.++
T Consensus 31 ~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGT---EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp CSCCCEEECTTSEECH---HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCCccEEECCCCCCCH---HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3579999999999987 433 3477899999999999644 44555444 78999999999999998
Q ss_pred C----CCcccccCCCCCcEEEcccccCCCCCCccccc--------------cccCEEEccCccCC-CCcc---ccccccc
Q 011101 239 G----GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY--------------LDLDVLFLNNNKFS-QNLP---ENIGSTG 296 (493)
Q Consensus 239 ~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--------------~~L~~L~L~~n~l~-~~~p---~~~~~~~ 296 (493)
+ .++..+..+++|++|+|++|.++...+..+.. .+|++|+|++|++. +.++ ..+..+.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 46778899999999999999997444333332 58999999999997 3344 3555666
Q ss_pred cc-hhhcccCcCCC-----CCchhhhhhhhhHHHHhcccccc----CCCcccccCCCCCcEEEecCCCCCCC----Cccc
Q 011101 297 AL-YVTFANNEFTG-----PIPSSIGRAKYLLEVLFLNNFFT----GCLPYEIGFLSNSTVFDVGNNRLTGP----IPHS 362 (493)
Q Consensus 297 ~l-~L~l~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~ 362 (493)
.+ +|++++|.+.. .++..+..+++|++|+|++|.++ +.++..+..+++|++|+|++|.+++. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 66 99999999873 33447788999999999999996 56778889999999999999999865 5666
Q ss_pred cc--CCCCCCEEEcccCCCCC----Ccchhh-cCCCCCcEEeeeCCcCCCCC
Q 011101 363 FG--CLSSMQYLNLAMNQFYG----PVPEIV-CQLPKLVNLSLSYNYFTQVG 407 (493)
Q Consensus 363 l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~ 407 (493)
+. .+++|++|+|++|.|++ .++..+ .++++|++|+|++|.+++..
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 63 48999999999999997 477777 56899999999999999876
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=8.6e-23 Score=204.97 Aligned_cols=231 Identities=14% Similarity=0.142 Sum_probs=183.3
Q ss_pred ccceEEEEcCCCCcCCCCCccc----hhhhCCC-cCcEEEccCCcCCCccCcccCCC-----CCCCEEECcCCCCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLS----DFLEKLE-DLAIFHANSNNFTKSIPKMTSKL-----KFLYELDVSNNKLFGGFP 242 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~----~~l~~l~-~L~~L~L~~n~i~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~p 242 (493)
..+++.|||++|.+++ ... ..+..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+
T Consensus 21 ~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3569999999999998 444 6788898 99999999999998766666664 999999999999987766
Q ss_pred cccc----CC-CCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCcccc----ccccc-cc-hhhcccC
Q 011101 243 MEVV----NI-KNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPEN----IGSTG-AL-YVTFANN 305 (493)
Q Consensus 243 ~~l~----~l-~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~----~~~~~-~l-~L~l~~n 305 (493)
..+. .+ ++|++|+|++|.+++.....+.. .+|++|+|++|.+.+..... +.... .+ +|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 6444 44 89999999999998665544432 38999999999998644433 34433 45 9999999
Q ss_pred cCCCCCchhhhhh-----hhhHHHHhccccccCC----CcccccC-CCCCcEEEecCCCCCCCCc----ccccCCCCCCE
Q 011101 306 EFTGPIPSSIGRA-----KYLLEVLFLNNFFTGC----LPYEIGF-LSNSTVFDVGNNRLTGPIP----HSFGCLSSMQY 371 (493)
Q Consensus 306 ~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~ 371 (493)
.+++..+..+... ++|++|+|++|.+.+. ++..+.. .++|++|+|++|.+++... ..+..+++|++
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 9998887766655 6999999999999863 3445555 4599999999999996544 34567899999
Q ss_pred EEcccCCCCCCcc-------hhhcCCCCCcEEeeeCCcCCCC
Q 011101 372 LNLAMNQFYGPVP-------EIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 372 L~Ls~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
|+|++|.+.+... ..+..+++|+.||+++|+|...
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9999999654332 3566788899999999999875
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=3.3e-24 Score=221.99 Aligned_cols=254 Identities=15% Similarity=0.087 Sum_probs=127.6
Q ss_pred ceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCCccCccc-----CCCCCCCEEECcCCCCCCCC----ccc
Q 011101 175 AVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKSIPKMT-----SKLKFLYELDVSNNKLFGGF----PME 244 (493)
Q Consensus 175 ~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~~----p~~ 244 (493)
+++.|++++|.++... ..++..+..+++|++|++++|.+++.....+ ....+|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 5777777777776311 0246667777777777777777764322221 22456777777777766432 344
Q ss_pred ccCCCCCcEEEcccccCCCCCCcccc------ccccCEEEccCccCCCC----ccccccccccc-hhhcccCcCCCCCch
Q 011101 245 VVNIKNLTFLDLRFNSFSGPVPAEIF------YLDLDVLFLNNNKFSQN----LPENIGSTGAL-YVTFANNEFTGPIPS 313 (493)
Q Consensus 245 l~~l~~L~~L~Ls~n~l~~~~p~~~~------~~~L~~L~L~~n~l~~~----~p~~~~~~~~l-~L~l~~n~l~~~~p~ 313 (493)
+..+++|++|+|++|.+.......+. ..+|++|++++|.+.+. ++..+..+..+ +|++++|.+.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 45566777777777666533222221 11566666666665542 23333344444 555555554422111
Q ss_pred hh-----hhhhhhHHHHhccccccCC----CcccccCCCC-----------------------------CcEEEecCCCC
Q 011101 314 SI-----GRAKYLLEVLFLNNFFTGC----LPYEIGFLSN-----------------------------STVFDVGNNRL 355 (493)
Q Consensus 314 ~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~-----------------------------L~~L~Ls~N~l 355 (493)
.+ ..+++|++|++++|.++.. ++..+..+++ |++|+|++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 11 1234445555555544432 2333334444 45555555544
Q ss_pred CCC----CcccccCCCCCCEEEcccCCCCCCcchhhcC-----CCCCcEEeeeCCcCCC-----CCccccCCCCCCEEEe
Q 011101 356 TGP----IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ-----LPKLVNLSLSYNYFTQ-----VGPECRKLIKRKVLDV 421 (493)
Q Consensus 356 ~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~L 421 (493)
++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|+|++|+|++ ++..+..+++|++|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 432 2333444455555555555554333322221 3455555555555552 2333444555555555
Q ss_pred eCCcCCC
Q 011101 422 RMNCILD 428 (493)
Q Consensus 422 ~~N~l~~ 428 (493)
++|.|++
T Consensus 406 ~~N~i~~ 412 (461)
T 1z7x_W 406 SNNCLGD 412 (461)
T ss_dssp CSSSCCH
T ss_pred CCCCCCH
Confidence 5555543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.6e-21 Score=183.02 Aligned_cols=179 Identities=21% Similarity=0.130 Sum_probs=142.1
Q ss_pred CCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhccc
Q 011101 226 FLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFAN 304 (493)
Q Consensus 226 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~ 304 (493)
..++++++++.++ .+|..+. .+|++|+|++|.+++..+..+... +|++|+|++|.+.+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------------------ 73 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------------------
Confidence 4566777777775 4554443 567777777777775555444444 66677766666653
Q ss_pred CcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcc
Q 011101 305 NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP 384 (493)
Q Consensus 305 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 384 (493)
..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+
T Consensus 74 -----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 74 -----LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp -----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 444556777888888888888887777788899999999999999997666678899999999999999997777
Q ss_pred hhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCC
Q 011101 385 EIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 385 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp 430 (493)
..+..+++|++|+|++|+|+++++ .+..+++|+.|++++|.++.-.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 789999999999999999999876 6889999999999999998753
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.5e-21 Score=184.22 Aligned_cols=199 Identities=14% Similarity=0.110 Sum_probs=159.2
Q ss_pred CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCc-CCCccCcccCCCCCCCEEECcC-CCCCCCCcccccCCC
Q 011101 172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNN-FTKSIPKMTSKLKFLYELDVSN-NKLFGGFPMEVVNIK 249 (493)
Q Consensus 172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~ 249 (493)
...+++.|++++|++++ ..+..+..+++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|.+++
T Consensus 29 ~~~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp CCTTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CCCcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 44589999999999998 555689999999999999997 8866666899999999999999 999877778899999
Q ss_pred CCcEEEcccccCCCCCCcccccc-ccC---EEEccCc-cCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhH-H
Q 011101 250 NLTFLDLRFNSFSGPVPAEIFYL-DLD---VLFLNNN-KFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL-E 323 (493)
Q Consensus 250 ~L~~L~Ls~n~l~~~~p~~~~~~-~L~---~L~L~~n-~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~-~ 323 (493)
+|++|++++|.+++ +|. +... +|+ +|++++| .+.+.. +..|..+++|+ +
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-----------------------~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLT 160 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-----------------------TTTTTTTBSSEEE
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-----------------------cccccchhcceeE
Confidence 99999999999995 776 4433 777 8999888 766322 23456677777 8
Q ss_pred HHhccccccCCCcccccCCCCCcEEEecCCC-CCCCCcccccCC-CCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCC
Q 011101 324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR-LTGPIPHSFGCL-SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401 (493)
Q Consensus 324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 401 (493)
|++++|.++ .++.......+|++|+|++|. +++..+..|..+ ++|++|+|++|++++ +|.. .+.+|+.|+++++
T Consensus 161 L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred EEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 888888887 444443334789999999995 886666778888 899999999999984 4443 5778999998876
Q ss_pred c
Q 011101 402 Y 402 (493)
Q Consensus 402 ~ 402 (493)
.
T Consensus 237 ~ 237 (239)
T 2xwt_C 237 W 237 (239)
T ss_dssp -
T ss_pred c
Confidence 4
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1e-23 Score=218.26 Aligned_cols=257 Identities=16% Similarity=0.060 Sum_probs=180.0
Q ss_pred ccceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCCccCccc-CCCC----CCCEEECcCCCCCC----CCc
Q 011101 173 KKAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKSIPKMT-SKLK----FLYELDVSNNKLFG----GFP 242 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~-~~l~----~L~~L~Ls~n~l~~----~~p 242 (493)
..+++.|++++|+++... ..++..+..+++|++|++++|.++......+ ..+. +|++|+|++|.++. .++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 356888888888877410 0245667788888888888888875333222 2344 68888888888873 456
Q ss_pred ccccCCCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCc----cccccccccc-hhhcccCcCCCCC
Q 011101 243 MEVVNIKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNL----PENIGSTGAL-YVTFANNEFTGPI 311 (493)
Q Consensus 243 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~----p~~~~~~~~l-~L~l~~n~l~~~~ 311 (493)
..+..+++|++|+|++|.+++.....+.. .+|++|++++|.+++.. +..+..+..+ +|++++|.+....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 77788888888888888886543333322 26888888888887643 4444555666 8888888876544
Q ss_pred chhhhh-----hhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCCC-----cccccCCCCCCEEEcccC
Q 011101 312 PSSIGR-----AKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGPI-----PHSFGCLSSMQYLNLAMN 377 (493)
Q Consensus 312 p~~l~~-----l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N 377 (493)
...+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|+|++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 444432 34788888988888864 4666777889999999999887432 222335788999999999
Q ss_pred CCCCC----cchhhcCCCCCcEEeeeCCcCCCCCc-cc-----cCCCCCCEEEeeCCcCCCC
Q 011101 378 QFYGP----VPEIVCQLPKLVNLSLSYNYFTQVGP-EC-----RKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 378 ~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~-----~~l~~L~~L~L~~N~l~~l 429 (493)
.+++. ++..+..+++|++|+|++|.|++... .+ ...++|++|++++|.|++.
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 88753 56667778899999999998875322 22 2336899999999988753
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.5e-22 Score=199.08 Aligned_cols=228 Identities=12% Similarity=0.108 Sum_probs=185.3
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCc-cCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKS-IPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
.+++.|++++|.+.+ ..+. +..+++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus 70 ~~l~~L~l~~n~l~~---~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ---PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECS---CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCccccc---cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 679999999999998 4443 66899999999999999865 778899999999999999999888888899999999
Q ss_pred EEEcccc-cCCCC-CCcccccc-ccCEEEccCc-cCCCC-ccccccccc-cc-hhhcccC--cCC-CCCchhhhhhhhhH
Q 011101 253 FLDLRFN-SFSGP-VPAEIFYL-DLDVLFLNNN-KFSQN-LPENIGSTG-AL-YVTFANN--EFT-GPIPSSIGRAKYLL 322 (493)
Q Consensus 253 ~L~Ls~n-~l~~~-~p~~~~~~-~L~~L~L~~n-~l~~~-~p~~~~~~~-~l-~L~l~~n--~l~-~~~p~~l~~l~~L~ 322 (493)
+|+|++| .+++. ++..+... +|++|++++| .+++. ++..+..+. .+ +|++++| .++ +.++..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 9999999 67642 45444444 9999999999 88764 566677777 67 9999999 454 45677788899999
Q ss_pred HHHhcccc-ccCCCcccccCCCCCcEEEecCCC-CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101 323 EVLFLNNF-FTGCLPYEIGFLSNSTVFDVGNNR-LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 323 ~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 400 (493)
+|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+|++| ++...-..+. .+|..|++++
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~ 302 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINC 302 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESC
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEec
Confidence 99999999 776777889999999999999995 33222236788999999999999 6543333332 3467778999
Q ss_pred CcCCCCCc
Q 011101 401 NYFTQVGP 408 (493)
Q Consensus 401 N~l~~~~~ 408 (493)
|++++..+
T Consensus 303 n~l~~~~~ 310 (336)
T 2ast_B 303 SHFTTIAR 310 (336)
T ss_dssp CCSCCTTC
T ss_pred ccCccccC
Confidence 99999755
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=7.1e-20 Score=195.43 Aligned_cols=248 Identities=22% Similarity=0.252 Sum_probs=173.8
Q ss_pred CCCCC-CCCCCCCCCceeec--cCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCC
Q 011101 148 ANTWM-GPDVCNKYKGFVCD--VRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKL 224 (493)
Q Consensus 148 ~~~W~-~~~~C~~w~gv~c~--~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l 224 (493)
...|. ..++| .|.|..|. ........+++.|++++|+++. +|..+. ++|++|++++|+|+. +|. .+
T Consensus 12 w~~W~~~~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~----lp~~l~--~~L~~L~L~~N~l~~-lp~---~l 80 (622)
T 3g06_A 12 WSAWRRAAPAE-ESRGRAAVVQKMRACLNNGNAVLNVGESGLTT----LPDCLP--AHITTLVIPDNNLTS-LPA---LP 80 (622)
T ss_dssp HHHHHHTCCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSCCSC----CCSCCC--TTCSEEEECSCCCSC-CCC---CC
T ss_pred HHHHHhcCCcc-hhccccccCcccccccCCCCcEEEecCCCcCc----cChhhC--CCCcEEEecCCCCCC-CCC---cC
Confidence 45566 34555 88664321 1111112358999999999997 666554 799999999999984 555 57
Q ss_pred CCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcc
Q 011101 225 KFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFA 303 (493)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~ 303 (493)
++|++|+|++|.|+ .+|. .+++|++|+|++|.++ .++. ...+|++|++++|++++ +|..+ ..+ +|+++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~--~l~~L~~L~L~~N~l~~-lp~~l---~~L~~L~Ls 149 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA--LPSGLCKLWIFGNQLTS-LPVLP---PGLQELSVS 149 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC--CCTTCCEEECCSSCCSC-CCCCC---TTCCEEECC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC--CCCCcCEEECCCCCCCc-CCCCC---CCCCEEECc
Confidence 99999999999997 4555 7899999999999998 4555 34589999999999985 55543 445 89999
Q ss_pred cCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC-----------------C
Q 011101 304 NNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC-----------------L 366 (493)
Q Consensus 304 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----------------l 366 (493)
+|.+++ ++.. +.+|+.|++++|.+++ ++ ..+++|+.|++++|.+++ ++..+.. +
T Consensus 150 ~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~ 220 (622)
T 3g06_A 150 DNQLAS-LPAL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALP 220 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCC
T ss_pred CCcCCC-cCCc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCC
Confidence 999985 4443 4578889999999995 55 456889999999999884 4433211 1
Q ss_pred CCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCCC
Q 011101 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQR 433 (493)
Q Consensus 367 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~ 433 (493)
++|++|+|++|+|++ +| ..+++|+.|+|++|+|++++. .+++|+.|+|++|.|+.+|..+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 445566666666553 33 234566666666666665544 4556666677777666666543
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.9e-20 Score=169.91 Aligned_cols=176 Identities=15% Similarity=0.092 Sum_probs=130.7
Q ss_pred CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101 159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS 233 (493)
Q Consensus 159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 233 (493)
.|.+|.|.... .....+++.|++++|++++ ..+..+..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 8 ~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 8 SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 89999997432 2334578889999988887 555567888889999999988887666667888889999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCC
Q 011101 234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI 311 (493)
Q Consensus 234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~ 311 (493)
+|.+++..+..|..+++|++|+|++|.+++..+..+... +|++|+|++|.+.+..+..+..+..+ +|++++|.+.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~- 163 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT- 163 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-
Confidence 888886666667888889999999888885444444444 88888888888886555556666666 777777766533
Q ss_pred chhhhhhhhhHHHHhccccccCCCcccccCCCC
Q 011101 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSN 344 (493)
Q Consensus 312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 344 (493)
+++|+.|+++.|.++|.+|..++.+..
T Consensus 164 ------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 ------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 346677777777777777766655443
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.5e-20 Score=198.28 Aligned_cols=189 Identities=22% Similarity=0.308 Sum_probs=134.4
Q ss_pred CCCce-eeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCC
Q 011101 159 KYKGF-VCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL 237 (493)
Q Consensus 159 ~w~gv-~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l 237 (493)
.|.++ .|.. .+++.|+|++|++++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|+|++|.|
T Consensus 49 ~~~~l~~C~~------~~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l 112 (571)
T 3cvr_A 49 AVSLLKECLI------NQFSELQLNRLNLSS----LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL 112 (571)
T ss_dssp HHHHHHHHHH------TTCSEEECCSSCCSC----CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCC
T ss_pred hhhhcccccc------CCccEEEeCCCCCCc----cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCC
Confidence 37777 6653 368999999999987 56544 378999999999998 566 4578999999999999
Q ss_pred CCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhh
Q 011101 238 FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGR 317 (493)
Q Consensus 238 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~ 317 (493)
++ +|. +.. +|++|+|++|.+++ +|. ...+|++|+|++|.+++ +|. .
T Consensus 113 ~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--------------------------~ 158 (571)
T 3cvr_A 113 ST-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--------------------------L 158 (571)
T ss_dssp SC-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--------------------------C
T ss_pred CC-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--------------------------c
Confidence 76 666 554 89999999999985 666 34488899998888874 332 2
Q ss_pred hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCC-------CEEEcccCCCCCCcchhhcCC
Q 011101 318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM-------QYLNLAMNQFYGPVPEIVCQL 390 (493)
Q Consensus 318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l 390 (493)
+++|++|+|++|.+++ +|. |. ++|+.|+|++|.|+ .+|. |.. +| ++|+|++|+|+ .+|..+..+
T Consensus 159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 3455566666666664 444 43 67777777777777 5555 443 55 77777777776 456666667
Q ss_pred CCCcEEeeeCCcCCCC
Q 011101 391 PKLVNLSLSYNYFTQV 406 (493)
Q Consensus 391 ~~L~~L~Ls~N~l~~~ 406 (493)
++|+.|+|++|.|++.
T Consensus 230 ~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSR 245 (571)
T ss_dssp CTTEEEECCSSSCCHH
T ss_pred CCCCEEEeeCCcCCCc
Confidence 7777777777777664
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.6e-20 Score=187.50 Aligned_cols=234 Identities=15% Similarity=0.106 Sum_probs=112.2
Q ss_pred CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccC-cccCCCCCCCE-EE
Q 011101 159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIP-KMTSKLKFLYE-LD 231 (493)
Q Consensus 159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~-L~ 231 (493)
.|..|.|.... .....+++.|+|++|+|+. .-+..|..+++|++|+|++|++.+.++ ..|.++++|++ ++
T Consensus 10 ~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56666665221 1223455566666666555 222345556666666666666544443 24455555543 34
Q ss_pred CcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccc-cccCEEEccC-ccCCCCccccccccccchhhcccCcCCC
Q 011101 232 VSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY-LDLDVLFLNN-NKFSQNLPENIGSTGALYVTFANNEFTG 309 (493)
Q Consensus 232 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~-n~l~~~~p~~~~~~~~l~L~l~~n~l~~ 309 (493)
+++|+++...+..|.++++|++|++++|.+....+..+.. .++..|++.+ +.+....
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--------------------- 145 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--------------------- 145 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC---------------------
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc---------------------
Confidence 4455555555555555666666666666655322222211 1444555543 2332211
Q ss_pred CCchhhhhh-hhhHHHHhccccccCCCcccccCCCCCcEEEecC-CCCCCCCc-ccccCCCCCCEEEcccCCCCCCcchh
Q 011101 310 PIPSSIGRA-KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGN-NRLTGPIP-HSFGCLSSMQYLNLAMNQFYGPVPEI 386 (493)
Q Consensus 310 ~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~ 386 (493)
...+..+ ..++.|++++|+++. ++.......+|++|++++ |.++ .+| +.|..+++|++|+|++|+|+. +|..
T Consensus 146 --~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~ 220 (350)
T 4ay9_X 146 --RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPSY 220 (350)
T ss_dssp --TTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCSS
T ss_pred --ccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cChh
Confidence 1222222 234455555555552 333333444566666653 4444 333 345566666666666666653 3321
Q ss_pred hcCCCCCcEEeeeCC-cCCCCCccccCCCCCCEEEeeCC
Q 011101 387 VCQLPKLVNLSLSYN-YFTQVGPECRKLIKRKVLDVRMN 424 (493)
Q Consensus 387 l~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~L~~N 424 (493)
.+.+|+.|.+.++ .++.++ .+..+++|+.+++.++
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred --hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 1334444444332 233333 4555666666666543
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.5e-20 Score=195.58 Aligned_cols=178 Identities=23% Similarity=0.274 Sum_probs=148.1
Q ss_pred cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccC
Q 011101 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNN 281 (493)
Q Consensus 202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~ 281 (493)
+|+.|++++|++++ +|..+ +++|++|+|++|.|+ .+| ..+++|++|+|++|.|++ +|. +.. +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence 89999999999986 66655 378999999999997 566 457899999999999985 777 444 899999999
Q ss_pred ccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcc
Q 011101 282 NKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH 361 (493)
Q Consensus 282 n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 361 (493)
|.+++ +| . .+++|+.|++++|.+++ +|. .+++|++|+|++|.+++ +|.
T Consensus 130 N~l~~-lp-----------------------~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 130 NQLTM-LP-----------------------E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp SCCSC-CC-----------------------C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CcCCC-CC-----------------------C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 98874 22 2 34678888899999885 665 57899999999999995 777
Q ss_pred cccCCCCCCEEEcccCCCCCCcchhhcCCCCC-------cEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL-------VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 362 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
|. ++|++|+|++|+|+ .+|. +.. +| +.|+|++|+|+.++..+..+++|+.|+|++|.|++
T Consensus 178 -l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 65 89999999999999 6666 554 77 99999999999998888889999999999999986
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.2e-20 Score=186.55 Aligned_cols=199 Identities=17% Similarity=0.180 Sum_probs=125.2
Q ss_pred CCccceEEEEcCCCCcCCCCCccc-hhhhCCCcCcE-EEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCC
Q 011101 171 IKKKAVAGVDFNGYRFNGPDFSLS-DFLEKLEDLAI-FHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248 (493)
Q Consensus 171 ~~~~~l~~L~L~~n~l~~~~~~~~-~~l~~l~~L~~-L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 248 (493)
....+|+.|+|++|.+.+ .++ ..|..+++|+. +.+.+|+++...+..|..+++|++|++++|.++...+..+...
T Consensus 51 ~~l~~L~~L~Ls~N~i~~---~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLE---VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp TTCTTCCEEEEECCTTCC---EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred cCCCCCCEEECcCCCCCC---ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence 456889999999999876 555 45788988775 6677899998778899999999999999999987777677778
Q ss_pred CCCcEEEccc-ccCCCCCCcc-cccc--ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHH
Q 011101 249 KNLTFLDLRF-NSFSGPVPAE-IFYL--DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEV 324 (493)
Q Consensus 249 ~~L~~L~Ls~-n~l~~~~p~~-~~~~--~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L 324 (493)
.++..|++.+ +.+. .++.. +... .+++|+|++|++....+..+......++++.+|+..+.+|
T Consensus 128 ~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~------------ 194 (350)
T 4ay9_X 128 LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP------------ 194 (350)
T ss_dssp SSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC------------
T ss_pred chhhhhhhccccccc-cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC------------
Confidence 8899999976 4565 55543 3332 6889999999987433333333233355554322222232
Q ss_pred HhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101 325 LFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 325 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 400 (493)
+..|..+++|++|||++|+|+ .+|.. .+.+|+.|.+.++.--..+|. +..+++|+.+++++
T Consensus 195 -----------~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 195 -----------NDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp -----------TTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred -----------HHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 223455555555555555555 33321 123344444333322223442 44555555555554
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=8.9e-20 Score=177.33 Aligned_cols=174 Identities=26% Similarity=0.290 Sum_probs=91.0
Q ss_pred hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccc-cccC
Q 011101 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY-LDLD 275 (493)
Q Consensus 197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~ 275 (493)
+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+ +..+++|++|+|++|.+++ ++. +.. .+|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence 34456666666666666533 235666666666666666654332 5666666666666666652 332 222 2555
Q ss_pred EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101 276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL 355 (493)
Q Consensus 276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 355 (493)
+|++++|++.+ . ..+..+++|++|++++|++
T Consensus 116 ~L~L~~n~i~~-----------------------------------------------~--~~l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 116 SLSLEHNGISD-----------------------------------------------I--NGLVHLPQLESLYLGNNKI 146 (291)
T ss_dssp EEECTTSCCCC-----------------------------------------------C--GGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCcCCC-----------------------------------------------C--hhhcCCCCCCEEEccCCcC
Confidence 55555555432 1 1233344555555555555
Q ss_pred CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCC
Q 011101 356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp 430 (493)
++. ..+..+++|++|+|++|++++..+ +..+++|+.|++++|+|++++ .+..+++|+.|++++|.++..|
T Consensus 147 ~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 147 TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred Ccc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccCCc
Confidence 532 344555555555555555554332 455555555555555555542 3455555555555555555443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=9e-20 Score=168.12 Aligned_cols=190 Identities=15% Similarity=0.087 Sum_probs=148.6
Q ss_pred eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
-+.+++++++++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 9 ~~~v~c~~~~l~~----~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 9 GTTVECYSQGRTS----VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTEEECCSSCCSS----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCccC----CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 4578899998887 55433 46899999999999977777789999999999999999877667788999999999
Q ss_pred cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
|++|.+++..+..+... +|++|+|++|++.+.. +..+..+++|++|++++|.+++.
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------~~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP-----------------------DGVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------TTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC-----------------------HhHhccCCcCCEEECCCCcccee
Confidence 99999985444444444 8999999888887432 23355667788888888888866
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
.+..|..+++|++|+|++|.+.+ .+++|++|+++.|+++|.+|.+++.++. ++..|...+
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSG 199 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTC
T ss_pred CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCC
Confidence 66668889999999999998774 3467899999999999999988876654 444454433
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2e-19 Score=191.58 Aligned_cols=191 Identities=20% Similarity=0.223 Sum_probs=115.0
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
..+..+++..+.+.. .+ .+..|.+|+.|++++|.+.. ++ .+..+++|++|+|++|.|++..+ +..+++|++
T Consensus 21 ~~l~~l~l~~~~i~~---~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 21 AETIKDNLKKKSVTD---AV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHTTCSCTTS---EE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHHhccCCCccc---cc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 344455566666555 22 24566777777777777764 32 46777777777777777765433 667777777
Q ss_pred EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (493)
|+|++|.+.+ ++. +... +|++|+|++|.+.+ + ..+..+++|+.|+|++|.++
T Consensus 92 L~Ls~N~l~~-l~~-l~~l~~L~~L~Ls~N~l~~------------------------l-~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 92 LFLDENKIKD-LSS-LKDLKKLKSLSLEHNGISD------------------------I-NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp EECCSSCCCC-CTT-STTCTTCCEEECTTSCCCC------------------------C-GGGGGCTTCSEEECCSSCCC
T ss_pred EECcCCCCCC-Chh-hccCCCCCEEEecCCCCCC------------------------C-ccccCCCccCEEECCCCccC
Confidence 7777777763 332 2222 66666666666542 1 12445566666666666666
Q ss_pred CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101 333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
+. ..+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+++.
T Consensus 145 ~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 145 DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 43 455666666666666666664333 56666666666666666643 2456666666666666666654
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=3.1e-20 Score=202.51 Aligned_cols=258 Identities=19% Similarity=0.206 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCc
Q 011101 126 IQLAFKVIQRFKKRITYDPQGIANTWM-GPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLA 204 (493)
Q Consensus 126 ~~~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~ 204 (493)
...+++++..+......+.+.....|. ....+..|.++.+.. .+++.|+|.++.+.. .+..+....+|+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~~l~L~~n~~~~----~~~~~l~~l~Ls 199 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST------PLTPKIELFANGKDE----ANQALLQHKKLS 199 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC------CccceEEeeCCCCCc----chhhHhhcCccC
Confidence 344456667776666555455556775 333333788777754 468999999998877 333222222222
Q ss_pred -----EEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEE
Q 011101 205 -----IFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLF 278 (493)
Q Consensus 205 -----~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~ 278 (493)
.+++..|.+. ..+..|..+.+|++|+|++|.+. .++..+..+++|++|+|++|.|+ .+|..+..+ +|++|+
T Consensus 200 ~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 276 (727)
T 4b8c_D 200 QYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLD 276 (727)
T ss_dssp -----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEE
T ss_pred cccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEe
Confidence 2223333333 34556667777777777777775 55555666777777777777776 666655544 666666
Q ss_pred ccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC
Q 011101 279 LNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358 (493)
Q Consensus 279 L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 358 (493)
|++|.|+ .+|..|+.+.+|++|+|++|.++ .+|..|+.+++|++|+|++|.|++.
T Consensus 277 Ls~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 277 LSHNRLT------------------------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CTTSCCS------------------------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CcCCcCC------------------------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence 6666665 44556667777777777777776 6677788888888888888888877
Q ss_pred CcccccCCCC-CCEEEcccCCCCCCcchhhcCCCCCcEEeeeCC--------cCCCCCc-cccCCCCCCEEEeeCCcCC
Q 011101 359 IPHSFGCLSS-MQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN--------YFTQVGP-ECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 359 ~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~~-~~~~l~~L~~L~L~~N~l~ 427 (493)
+|..+..+.. +..|+|++|.+++.+|. .|+.|+++.| .|.+... .+..+.++....+++|.+.
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred ChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 7776654322 23467888888877664 3455566665 2222221 3345556666777777664
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=9.4e-19 Score=186.44 Aligned_cols=169 Identities=20% Similarity=0.295 Sum_probs=93.0
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.|++ ++ .+..+++|++
T Consensus 43 ~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS----VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp TTCCCCBCTTCCCCC----CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred CCCCEEECcCCCCCC----Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 455666666666554 22 35556666666666666654332 5566666666666666643 22 4556666666
Q ss_pred EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
|+|++|.+.+ ++......+|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+
T Consensus 114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-------------------------~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-------------------------TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-------------------------GGGGSCTTCSEEECCSSCCCC
T ss_pred EEecCCCCCC-CccccCCCccCEEECCCCccCCc-------------------------hhhcccCCCCEEECcCCcCCC
Confidence 6666666652 33222222566666666555421 224445556666666666654
Q ss_pred CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 011101 334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381 (493)
Q Consensus 334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 381 (493)
..+ +..+++|+.|+|++|.|++ + ..+..+++|+.|+|++|.+++
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred chh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence 433 5566666666666666653 2 245556666666666666553
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=6.4e-22 Score=209.57 Aligned_cols=190 Identities=18% Similarity=0.130 Sum_probs=130.4
Q ss_pred CCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccccc-------------CCCCCCcccccc-ccCEEE-ccCccCCC
Q 011101 222 SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNS-------------FSGPVPAEIFYL-DLDVLF-LNNNKFSQ 286 (493)
Q Consensus 222 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~~-~L~~L~-L~~n~l~~ 286 (493)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|. +.+.+|..+... +|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56777888888888874 677788888888888876664 222222222222 344443 3332221
Q ss_pred Cccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC
Q 011101 287 NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC 365 (493)
Q Consensus 287 ~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 365 (493)
.+ .+.+.+|.+... . ...|+.|+|++|.+++ +|. |+.+++|+.|+|++|.|+ .+|..|..
T Consensus 424 ----------~L~~l~l~~n~i~~l-----~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKM-----E-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHH-----H-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhccccccc-----C-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 11 223333333210 0 1236678888888885 565 888888888888888888 78888888
Q ss_pred CCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC--CccccCCCCCCEEEeeCCcCCCCCCCCC
Q 011101 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV--GPECRKLIKRKVLDVRMNCILDLPNQRS 434 (493)
Q Consensus 366 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~~~ 434 (493)
+++|++|+|++|+|++ +| .+..+++|+.|+|++|+|+++ +..+..+++|+.|+|++|.|+++|....
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 8888888888888885 56 788888888888888888887 5678888888888888888888876543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.7e-18 Score=168.21 Aligned_cols=171 Identities=21% Similarity=0.287 Sum_probs=121.4
Q ss_pred ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
..+++.|++++|.+.. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+++ + ..+..+++|+
T Consensus 45 l~~L~~L~l~~~~i~~----~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS----VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred cCcccEEEccCCCccc----Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 4679999999999987 44 48899999999999999997544 9999999999999999975 3 4589999999
Q ss_pred EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (493)
+|+|++|.+++ ++......+|++|++++|.+.+. ..+
T Consensus 116 ~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~-------------------------~~l----------------- 152 (291)
T 1h6t_A 116 SLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-------------------------TVL----------------- 152 (291)
T ss_dssp EEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-------------------------GGG-----------------
T ss_pred EEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc-------------------------hhh-----------------
Confidence 99999999984 44322333888888888887631 122
Q ss_pred CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101 333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
..+++|++|++++|.+++..+ +..+++|++|+|++|.|++ ++ .+..+++|+.|++++|+++..
T Consensus 153 -------~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 153 -------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred -------ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 334555555555555553222 5555566666666666553 22 255566666666666665554
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=4.6e-18 Score=159.22 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=120.4
Q ss_pred CCCCCCCCCCCCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCC
Q 011101 149 NTWMGPDVCNKYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSK 223 (493)
Q Consensus 149 ~~W~~~~~C~~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~ 223 (493)
..|.+...| +|.+|.|.... .....+++.|+|++|.+++ ..+..+..+++|++|+|++|+|+...+..|..
T Consensus 11 ~~~~~~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 11 AACPSQCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp CCCCTTCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence 455677888 99999997432 2345678888888888888 66777888888888888888887665566788
Q ss_pred CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhh
Q 011101 224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVT 301 (493)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~ 301 (493)
+++|++|+|++|.|++..+..|..+++|++|+|++|.++ .+|..+... +|++|+|++|++.+..+..+..+..+ +|+
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 888888888888888766667788888888888888888 677766555 88888888888886555566666666 777
Q ss_pred cccCcCCC
Q 011101 302 FANNEFTG 309 (493)
Q Consensus 302 l~~n~l~~ 309 (493)
+++|.+..
T Consensus 166 l~~N~~~c 173 (229)
T 3e6j_A 166 LFGNPWDC 173 (229)
T ss_dssp CTTSCBCT
T ss_pred eeCCCccC
Confidence 77777664
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.8e-18 Score=163.29 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=89.6
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.++++++.+++ ++ .+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+ +..+++|++
T Consensus 19 ~~l~~l~l~~~~i~~----~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD----LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHTCSCTTS----EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHhcCCCccc----cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 345555666666655 23 35566666666666666653 33 45666666666666666654332 566666666
Q ss_pred EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 333 (493)
|+|++|.+++ ++.... .+|++|+|++|++++
T Consensus 90 L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~----------------------------------------------- 120 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD----------------------------------------------- 120 (263)
T ss_dssp EECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-----------------------------------------------
T ss_pred EECCCCccCC-cCcccc-CcccEEEccCCccCC-----------------------------------------------
Confidence 6666666652 332222 455555555554431
Q ss_pred CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101 334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
+ ..+..+++|++|+|++|++++ ++ .+..+++|++|+|++|++++. ..+..+++|+.|++++|.++..
T Consensus 121 -~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 121 -T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1 123344555555555555553 22 345555555555555555533 3445555555555555555544
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.6e-18 Score=173.70 Aligned_cols=174 Identities=23% Similarity=0.195 Sum_probs=105.5
Q ss_pred CEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccc-cc-ccCEEEccCccCCCCccccccccccchhhcccC
Q 011101 228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIF-YL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANN 305 (493)
Q Consensus 228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n 305 (493)
+.++++++.++ .+|..+. ..++.|+|++|.|++..+..+. .. +|++|+|++|++.+..+..+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~------------- 84 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF------------- 84 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-------------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-------------
Confidence 57888888885 4665543 4588889988888854444443 33 88888888888875444444
Q ss_pred cCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcch
Q 011101 306 EFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE 385 (493)
Q Consensus 306 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 385 (493)
..+++|++|+|++|++++..+..|..+.+|++|+|++|.|++..+..|..+++|++|+|++|+|++....
T Consensus 85 ----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 85 ----------VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp ----------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred ----------cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 4445555555555555544444555666666666666666655555666666666666666666643333
Q ss_pred hh---cCCCCCcEEeeeCCcCCCCCc-cccCCCC--CCEEEeeCCcCC
Q 011101 386 IV---CQLPKLVNLSLSYNYFTQVGP-ECRKLIK--RKVLDVRMNCIL 427 (493)
Q Consensus 386 ~l---~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~--L~~L~L~~N~l~ 427 (493)
.+ ..+++|+.|+|++|+|++++. .+..++. |+.|+|++|.+.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 33 345666666666666666543 3444444 355666666554
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=158.26 Aligned_cols=153 Identities=23% Similarity=0.129 Sum_probs=117.9
Q ss_pred cEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (493)
+.+++++|.++ .+|..+. ..+++|+|++|.+.+..+ ...|..+++|++|+|++|.+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~----------------------~~~~~~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEA----------------------TGIFKKLPQLRKINFSNNKI 69 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECC----------------------CCCGGGCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCc----------------------hhhhccCCCCCEEECCCCcC
Confidence 46777777776 4565432 245677777777664322 13356777788888888888
Q ss_pred cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC-ccc
Q 011101 332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG-PEC 410 (493)
Q Consensus 332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~ 410 (493)
++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|+|++++ ..+
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 8766677888888999999999988777777888889999999999988777888888889999999999998874 477
Q ss_pred cCCCCCCEEEeeCCcCCC
Q 011101 411 RKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 411 ~~l~~L~~L~L~~N~l~~ 428 (493)
..+++|+.|+|++|.+..
T Consensus 150 ~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCTTCCEEECCSCCEEC
T ss_pred cCCCCCCEEEecCcCCcC
Confidence 888889999999988765
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.6e-18 Score=157.65 Aligned_cols=152 Identities=19% Similarity=0.158 Sum_probs=120.1
Q ss_pred cEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 252 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (493)
+.++++++.++ .+|..+. .+|++|+|++|.+.+ ..+..|..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~-----------------------i~~~~~~~l~~L~~L~Ls~N~i 68 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKV-----------------------IPPGAFSPYKKLRRIDLSNNQI 68 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCE-----------------------ECTTSSTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCC-----------------------cCHhHhhCCCCCCEEECCCCcC
Confidence 46777777777 5665443 467777777777663 2334556677788888888888
Q ss_pred cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cc
Q 011101 332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-EC 410 (493)
Q Consensus 332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~ 410 (493)
++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|+++++ .+
T Consensus 69 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 69 SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 87778888889999999999999985555567888999999999999998888888889999999999999998866 57
Q ss_pred cCCCCCCEEEeeCCcCCC
Q 011101 411 RKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 411 ~~l~~L~~L~L~~N~l~~ 428 (493)
..+++|+.|+|++|.+..
T Consensus 149 ~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred hCCCCCCEEEeCCCCcCC
Confidence 888999999999998764
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=4.3e-18 Score=170.64 Aligned_cols=175 Identities=21% Similarity=0.152 Sum_probs=115.1
Q ss_pred EEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccC-CCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 177 AGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
+.+++++++++. +|..+. ..++.|+|++|+|++..+..|. ++.+|++|+|++|.|++..+..|.++++|++|+
T Consensus 21 ~~l~c~~~~l~~----iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPN----VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSS----CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc----cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 478999999987 665543 4689999999999987777777 899999999999999887778899999999999
Q ss_pred cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
|++|.+++..+..+... +|++|+|++|++.+. .+..|..+.+|++|+|++|.+++.
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-----------------------~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-----------------------DRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------------------CTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE-----------------------CHHHhCCcccCCEEECCCCcCCee
Confidence 99999884444444443 777777777776531 223344455555555555555532
Q ss_pred Ccccc---cCCCCCcEEEecCCCCCCCCcccccCCCC--CCEEEcccCCCC
Q 011101 335 LPYEI---GFLSNSTVFDVGNNRLTGPIPHSFGCLSS--MQYLNLAMNQFY 380 (493)
Q Consensus 335 ~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~ 380 (493)
....| ..+++|+.|+|++|.|++..+..+..++. |+.|+|++|.+.
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 22222 34555555555555555333334444443 245555555554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=6.1e-18 Score=157.37 Aligned_cols=153 Identities=25% Similarity=0.197 Sum_probs=121.9
Q ss_pred CEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc-cccc-ccCEEEccCccCCCCccccccccccchhhcccC
Q 011101 228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE-IFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANN 305 (493)
Q Consensus 228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n 305 (493)
+++++++|.++ .+|..+. ..+++|+|++|.+++..+.. +... +|++|+|++|.+++..+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~---------------- 74 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---------------- 74 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT----------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH----------------
Confidence 58999999996 5676553 46799999999999665543 3343 99999999999875333
Q ss_pred cCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcch
Q 011101 306 EFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE 385 (493)
Q Consensus 306 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 385 (493)
..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+.
T Consensus 75 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 75 -------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred -------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 3455666777778888888776677788888899999999998877788888888899999999998877788
Q ss_pred hhcCCCCCcEEeeeCCcCCCC
Q 011101 386 IVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 386 ~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
.+..+++|+.|+|++|.+...
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECS
T ss_pred HhcCCCCCCEEEecCcCCcCC
Confidence 888888899999999988764
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=5.4e-18 Score=154.87 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=102.0
Q ss_pred CCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhh
Q 011101 222 SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVT 301 (493)
Q Consensus 222 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~ 301 (493)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~----------------------------------- 82 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN----------------------------------- 82 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-----------------------------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-----------------------------------
Confidence 45666777777777775 344 4666667777777666544 222
Q ss_pred cccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCC-CC
Q 011101 302 FANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ-FY 380 (493)
Q Consensus 302 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~ 380 (493)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|+ ++
T Consensus 83 ------------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 83 ------------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150 (197)
T ss_dssp ------------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred ------------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence 22333444444455555544445556677788888888888886677777888888888888887 55
Q ss_pred CCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101 381 GPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 381 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
.++ .+..+++|+.|++++|+|+++. .+..+++|+.|++++|+|..
T Consensus 151 -~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 151 -DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred -ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 444 5777888888888888888765 67778888888888887754
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=6.5e-18 Score=157.19 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=121.2
Q ss_pred CEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCc
Q 011101 228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNE 306 (493)
Q Consensus 228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~ 306 (493)
+.++++++.++ .+|..+. .+|++|+|++|.|++..+..+... +|++|+|++|++.+..+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~----------------- 73 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP----------------- 73 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-----------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-----------------
Confidence 67999999996 5666554 789999999999995555455554 89999999999875433
Q ss_pred CCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchh
Q 011101 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386 (493)
Q Consensus 307 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 386 (493)
..|..+++|++|+|++|.++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..
T Consensus 74 ------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 74 ------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp ------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 44555666777777777777554556778889999999999998777888888899999999999998777777
Q ss_pred hcCCCCCcEEeeeCCcCCC
Q 011101 387 VCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 387 l~~l~~L~~L~Ls~N~l~~ 405 (493)
+..+++|+.|+|++|.+..
T Consensus 148 ~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTCTTCCEEECCSSCEEC
T ss_pred HhCCCCCCEEEeCCCCcCC
Confidence 8888899999999998865
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=2.8e-17 Score=153.82 Aligned_cols=154 Identities=26% Similarity=0.202 Sum_probs=113.0
Q ss_pred eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
.+.+++++++++. +|..+. ++|++|+|++|.|++..+..|..+++|++|+|++|.|+...+..|.++++|++|+
T Consensus 21 ~~~v~c~~~~l~~----ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHAS----VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCSS----CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEccCCCcCc----cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 5678999998887 565443 7889999999999988788888999999999999998766666778888888888
Q ss_pred cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (493)
|++|.+++..+..+... +|++|+|++|++. .
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------------------------------~ 126 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT------------------------------------------------E 126 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------------------------------S
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc------------------------------------------------c
Confidence 88888874333333322 6666666665554 2
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101 335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV 383 (493)
Q Consensus 335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 383 (493)
+|..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+....
T Consensus 127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 3444556677788888888887555566777788888888888877543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=3e-18 Score=163.98 Aligned_cols=173 Identities=20% Similarity=0.200 Sum_probs=136.9
Q ss_pred CCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEE
Q 011101 199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVL 277 (493)
Q Consensus 199 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L 277 (493)
.+.+++.+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+++ ++. +... +|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEE
Confidence 4566778888888888543 57788899999999998863 44 67888888888888888874 333 3333 67777
Q ss_pred EccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC
Q 011101 278 FLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG 357 (493)
Q Consensus 278 ~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 357 (493)
+|++|++.+ ++. +.. .+|++|+|++|++++
T Consensus 91 ~L~~N~l~~------------------------------------------------l~~-~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 91 SVNRNRLKN------------------------------------------------LNG-IPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp ECCSSCCSC------------------------------------------------CTT-CCC-SSCCEEECCSSCCSB
T ss_pred ECCCCccCC------------------------------------------------cCc-ccc-CcccEEEccCCccCC
Confidence 777776642 111 111 789999999999995
Q ss_pred CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC
Q 011101 358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 358 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
++ .+..+++|++|+|++|+|++. + .+..+++|+.|+|++|+|+++ ..+..+++|+.|++++|.++..|..
T Consensus 121 -~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 121 -TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp -SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred -Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCccc
Confidence 44 688999999999999999964 4 688999999999999999998 7788999999999999999988743
No 114
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=4.2e-19 Score=189.43 Aligned_cols=254 Identities=16% Similarity=0.079 Sum_probs=132.8
Q ss_pred cceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCE-----------------------
Q 011101 174 KAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYE----------------------- 229 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~----------------------- 229 (493)
.+++.|++++|.+++.. -.++..+..+++|++|++++|.+.+ ++..+..+++|++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 56777777777776210 0234445566777777777766543 2233333333333
Q ss_pred ----EECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc-cccc-c------------------------cCEEEc
Q 011101 230 ----LDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE-IFYL-D------------------------LDVLFL 279 (493)
Q Consensus 230 ----L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~-~------------------------L~~L~L 279 (493)
|+++++.. ..++..+..+++|++|+|++|.+++..... +... + |++|+|
T Consensus 271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 33333221 334455556667777777777654322211 1111 4 455555
Q ss_pred cC-----------ccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhh-hhhhHHHHhc----cccccCC-----Cc
Q 011101 280 NN-----------NKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGR-AKYLLEVLFL----NNFFTGC-----LP 336 (493)
Q Consensus 280 ~~-----------n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~-----~p 336 (493)
++ |.+++..... ...+..+ +|++..|.+++.....+.. +++|++|+++ .|.+++. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 42 2333211111 1223333 4555555555444444443 5556666664 3444432 22
Q ss_pred ccccCCCCCcEEEecCCC--CCCCCccccc-CCCCCCEEEcccCCCCC-CcchhhcCCCCCcEEeeeCCcCCCC--Cccc
Q 011101 337 YEIGFLSNSTVFDVGNNR--LTGPIPHSFG-CLSSMQYLNLAMNQFYG-PVPEIVCQLPKLVNLSLSYNYFTQV--GPEC 410 (493)
Q Consensus 337 ~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~ 410 (493)
..+..+++|++|+|++|. +++.....+. .+++|++|+|++|.+++ .++..+..+++|++|+|++|.|++. ...+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 224456666666665432 4433333332 36678888888877765 2344456677888888888877643 2233
Q ss_pred cCCCCCCEEEeeCCcCCCC
Q 011101 411 RKLIKRKVLDVRMNCILDL 429 (493)
Q Consensus 411 ~~l~~L~~L~L~~N~l~~l 429 (493)
..+++|++|+|++|+++..
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 5677888888888876653
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=4.2e-19 Score=189.43 Aligned_cols=254 Identities=13% Similarity=0.050 Sum_probs=150.2
Q ss_pred ccceEEEEcCCCCcCCCCCc-cchhhhCCCcCcEEEccCCcCCC----ccCcccCCCCCCCEEECcCCCCCCCCcccccC
Q 011101 173 KKAVAGVDFNGYRFNGPDFS-LSDFLEKLEDLAIFHANSNNFTK----SIPKMTSKLKFLYELDVSNNKLFGGFPMEVVN 247 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~~~~~~-~~~~l~~l~~L~~L~L~~n~i~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 247 (493)
..+++.|+|++|.+++.... +...+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 35788999999988762111 44566788899999999998872 344556678999999999988754 5556666
Q ss_pred CCCCcEEEcccccC--------------------------CCCCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-
Q 011101 248 IKNLTFLDLRFNSF--------------------------SGPVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL- 298 (493)
Q Consensus 248 l~~L~~L~Ls~n~l--------------------------~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l- 298 (493)
+++|++|+++++.. .+.++..+... +|++|+|++|.+.+... ..+..+..+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 66676666653211 11334333333 89999999999764333 223344433
Q ss_pred hhhcccCcCCCCCchhhhh------------------------------------hhhhHHHHhccccccCCCcccccC-
Q 011101 299 YVTFANNEFTGPIPSSIGR------------------------------------AKYLLEVLFLNNFFTGCLPYEIGF- 341 (493)
Q Consensus 299 ~L~l~~n~l~~~~p~~l~~------------------------------------l~~L~~L~L~~n~l~~~~p~~l~~- 341 (493)
+|+++++...+.++..+.. +++|++|+++.|.+++.....+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 4444422111111122223 445555555555554433333333
Q ss_pred CCCCcEEEec----CCCCCCC-----CcccccCCCCCCEEEcccCC--CCCCcchhhc-CCCCCcEEeeeCCcCCCC--C
Q 011101 342 LSNSTVFDVG----NNRLTGP-----IPHSFGCLSSMQYLNLAMNQ--FYGPVPEIVC-QLPKLVNLSLSYNYFTQV--G 407 (493)
Q Consensus 342 l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~--~ 407 (493)
+++|+.|+++ .|.+++. ++..+..+++|++|+|++|. +++.....+. .+++|++|+|++|.+++. .
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 5666666664 4555532 22234456667777776432 4443333333 367788888888887752 2
Q ss_pred ccccCCCCCCEEEeeCCcCC
Q 011101 408 PECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 408 ~~~~~l~~L~~L~L~~N~l~ 427 (493)
..+..+++|++|+|++|.|+
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCB
T ss_pred HHHhcCcccCeeeccCCCCc
Confidence 23467788888888888764
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=3.4e-17 Score=149.48 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=107.5
Q ss_pred hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccC
Q 011101 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLD 275 (493)
Q Consensus 197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~ 275 (493)
...+++|++|++++|.++ .++ .+..+++|++|++++|.++. ...+..+++|++|++++|.+++..+..+... +|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 366789999999999998 455 68999999999999998743 3578899999999999999986556555544 677
Q ss_pred EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCC-
Q 011101 276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR- 354 (493)
Q Consensus 276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~- 354 (493)
+|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 116 ~L~Ls~n~i~~~-----------------------------------------------~~~~l~~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 116 LLDISHSAHDDS-----------------------------------------------ILTKINTLPKVNSIDLSYNGA 148 (197)
T ss_dssp EEECCSSBCBGG-----------------------------------------------GHHHHTTCSSCCEEECCSCTB
T ss_pred EEEecCCccCcH-----------------------------------------------hHHHHhhCCCCCEEEccCCCC
Confidence 777777766532 22333445666666666666
Q ss_pred CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101 355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405 (493)
Q Consensus 355 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 405 (493)
++ .++ .+..+++|++|++++|++++. + .+..+++|+.|++++|+|.+
T Consensus 149 i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 149 IT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 44 444 466666777777777776642 2 45666777777777776653
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=5.8e-17 Score=176.67 Aligned_cols=196 Identities=19% Similarity=0.245 Sum_probs=119.9
Q ss_pred ceEEEEcCCCCcCCCC------CccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCC
Q 011101 175 AVAGVDFNGYRFNGPD------FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248 (493)
Q Consensus 175 ~l~~L~L~~n~l~~~~------~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 248 (493)
.+..++|+.+.|.+.. ...+..+..+..|+.|+|++|.+. .++..+.++++|++|+|++|.|+ .+|..|.++
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 4555666666554411 124667888999999999999998 67777779999999999999997 888889999
Q ss_pred CCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhh-hHHHH
Q 011101 249 KNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKY-LLEVL 325 (493)
Q Consensus 249 ~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~-L~~L~ 325 (493)
++|++|+|++|.|+ .+|..+..+ +|++|+|++|.+. .+|..|+.+..+ +|+|++|.+++.+|..+..+.. +..|+
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 99999999999999 788888776 9999999999987 778889998888 9999999999988888876633 34578
Q ss_pred hccccccCCCcccccCCCCCcEEEecCC--------CCCCCCcccccCCCCCCEEEcccCCCC
Q 011101 326 FLNNFFTGCLPYEIGFLSNSTVFDVGNN--------RLTGPIPHSFGCLSSMQYLNLAMNQFY 380 (493)
Q Consensus 326 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 380 (493)
|++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....++.|.+.
T Consensus 348 l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 999999987775 4556666666 333333444455666677777777664
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.4e-18 Score=181.00 Aligned_cols=169 Identities=15% Similarity=0.068 Sum_probs=125.9
Q ss_pred cCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHH
Q 011101 246 VNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEV 324 (493)
Q Consensus 246 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L 324 (493)
..+++|+.|+|++|.++ .+|..+... +|+.|++++|.....++ ..+..+...+.+|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII----------LLMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH----------HHHHhcccccCCHHHHHHHHhcccC
Confidence 45677888888888886 777777766 77777776654211111 1111122344556666666666666
Q ss_pred H-hccc-------------cccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101 325 L-FLNN-------------FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL 390 (493)
Q Consensus 325 ~-L~~n-------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 390 (493)
+ ++.| .+.. ++ ...|+.|+|++|.|++ +|. |..+++|++|+|++|.|+ .+|..++.+
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred cchhhcccchhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 6 4444 3332 11 1359999999999995 776 999999999999999999 789999999
Q ss_pred CCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC--CCCCCc
Q 011101 391 PKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL--PNQRSR 435 (493)
Q Consensus 391 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~~~ 435 (493)
++|+.|+|++|+|++++ .+..+++|+.|+|++|.|+++ |..+..
T Consensus 486 ~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 486 RCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred CCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 99999999999999986 899999999999999999998 665543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.4e-16 Score=141.45 Aligned_cols=121 Identities=18% Similarity=0.100 Sum_probs=104.8
Q ss_pred CCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhc
Q 011101 310 PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVC 388 (493)
Q Consensus 310 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~ 388 (493)
.++..+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++.++..+..+++|++|+|++|++++.. ...+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 4555567778888899999988865 77889999999999999999778888888999999999999998642 26788
Q ss_pred CCCCCcEEeeeCCcCCCCCc----cccCCCCCCEEEeeCCcCCCCCCC
Q 011101 389 QLPKLVNLSLSYNYFTQVGP----ECRKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 389 ~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
.+++|+.|++++|.+++++. .+..+++|+.|++++|.+..+|+.
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999999999999999876 688999999999999999998864
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=1.8e-16 Score=144.13 Aligned_cols=84 Identities=26% Similarity=0.294 Sum_probs=34.9
Q ss_pred hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101 321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 400 (493)
|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 33333333333333333344444444444444444433333344444444444444444433344444444444444444
Q ss_pred CcCC
Q 011101 401 NYFT 404 (493)
Q Consensus 401 N~l~ 404 (493)
|.++
T Consensus 136 N~l~ 139 (192)
T 1w8a_A 136 NPFN 139 (192)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 4443
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=4.8e-16 Score=153.58 Aligned_cols=247 Identities=11% Similarity=0.055 Sum_probs=131.9
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhC-CCcCcEEEccCCcCC--------------------CccCcccCC--------C
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEK-LEDLAIFHANSNNFT--------------------KSIPKMTSK--------L 224 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~-l~~L~~L~L~~n~i~--------------------~~~p~~~~~--------l 224 (493)
.+++.|+++++ +.. .--..+.. +++|+.|||++|+|. ..-...|.+ +
T Consensus 25 ~~l~~L~l~g~-i~~---~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGK-LNA---EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEE-ECH---HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred CceeEEEEecc-ccH---HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence 45677777653 221 11123333 667778888777776 111234555 7
Q ss_pred CCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc--ccCEEEccCccC----CCCccccccccccc
Q 011101 225 KFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKF----SQNLPENIGSTGAL 298 (493)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~L~~n~l----~~~~p~~~~~~~~l 298 (493)
.+|++|+|.+ .++.....+|.++.+|+.|++++|.+. .++...+.. ++..+.+..+.. .......+..+..+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 7777777777 666555566777777777777777766 333333332 344444333211 10111112122211
Q ss_pred --hhhcccCcCCCCCchhhh----hhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEE
Q 011101 299 --YVTFANNEFTGPIPSSIG----RAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYL 372 (493)
Q Consensus 299 --~L~l~~n~l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 372 (493)
.+.+... +.++..+. ...++..+.+.++-...........+.+|+.|+|++|+++..-...|.++.+|++|
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 1111110 01111111 01111111121110000000001136788888888888875555667788888888
Q ss_pred EcccCCCCCCcchhhcCCCCCc-EEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCC
Q 011101 373 NLAMNQFYGPVPEIVCQLPKLV-NLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 373 ~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
+|.+| ++.+....|.++.+|+ .|++.+ .++.+.. +|..+.+|+.|++++|.++.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 88877 6655566777888888 888877 6776654 67788888888888888887765
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=5.7e-15 Score=134.15 Aligned_cols=129 Identities=20% Similarity=0.241 Sum_probs=88.2
Q ss_pred EEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCc-ccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 177 AGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPK-MTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
+.+++++++++. +|..+.. +|++|++++|+|++..+. .|..+++|++|+|++|.|++..+..|.++++|++|+
T Consensus 11 ~~l~~s~~~l~~----ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKE----IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSS----CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCc----CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 456777777755 5544432 677777777777755443 367777777777777777776677777777777777
Q ss_pred cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCC
Q 011101 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI 311 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~ 311 (493)
|++|.+++..+..+... +|++|+|++|++++..+..+..+..+ +|++++|.+.+..
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 77777775555545444 77777777777777667677666666 7777777776543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.1e-15 Score=135.68 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=103.8
Q ss_pred CCCCcEEEcccccCC-CCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHH
Q 011101 248 IKNLTFLDLRFNSFS-GPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVL 325 (493)
Q Consensus 248 l~~L~~L~Ls~n~l~-~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~ 325 (493)
.++|++|+|++|.++ +.++..+... +|++|++++|.+.+. ..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~ 77 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-------------------------SNLPKLPKLKKLE 77 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-------------------------SSCCCCSSCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-------------------------hhhccCCCCCEEE
Confidence 367788888888776 5666665444 777777777776532 3455566777778
Q ss_pred hccccccCCCcccccCCCCCcEEEecCCCCCCCC-cccccCCCCCCEEEcccCCCCCCcc---hhhcCCCCCcEEeeeCC
Q 011101 326 FLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI-PHSFGCLSSMQYLNLAMNQFYGPVP---EIVCQLPKLVNLSLSYN 401 (493)
Q Consensus 326 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N 401 (493)
+++|.+.+.++..+..+++|++|+|++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 8888877667777777889999999999998532 2678889999999999999986554 47888999999999999
Q ss_pred cCCCCCcc
Q 011101 402 YFTQVGPE 409 (493)
Q Consensus 402 ~l~~~~~~ 409 (493)
.+..++.+
T Consensus 158 ~~~~~~~~ 165 (168)
T 2ell_A 158 EDQEAPDS 165 (168)
T ss_dssp TSCBCCSS
T ss_pred Chhhcccc
Confidence 98887653
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=136.41 Aligned_cols=125 Identities=25% Similarity=0.277 Sum_probs=100.5
Q ss_pred hhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCC
Q 011101 300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQF 379 (493)
Q Consensus 300 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 379 (493)
+++++|.++ .+|..+. .+|++|++++|.++ .+|..|..+++|++|+|++|.|++..+..|..+++|++|+|++|+|
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 344444444 3444332 46778888888887 6678888899999999999999977777888999999999999999
Q ss_pred CCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCC
Q 011101 380 YGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 380 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~ 428 (493)
++..+..|..+++|+.|+|++|+|+.++. .|..+++|+.|++++|.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 98777888899999999999999998876 57889999999999998764
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=7.3e-15 Score=133.55 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=69.1
Q ss_pred chhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCC
Q 011101 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP 391 (493)
Q Consensus 312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 391 (493)
|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..++
T Consensus 47 p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 34455555666666666666655556677778888888888888876667788888888888888888865555677788
Q ss_pred CCcEEeeeCCcCCC
Q 011101 392 KLVNLSLSYNYFTQ 405 (493)
Q Consensus 392 ~L~~L~Ls~N~l~~ 405 (493)
+|+.|+|++|.+..
T Consensus 127 ~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 127 ALSHLAIGANPLYC 140 (193)
T ss_dssp TCCEEECCSSCEEC
T ss_pred cccEEEeCCCCeec
Confidence 88888888888765
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=5.7e-17 Score=172.89 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=73.8
Q ss_pred hhhcccCcCCCCCchhhh-hhhhhHHHHhc--c----ccccCC-----CcccccCCCCCcEEEecCCCCCCCCcccccC-
Q 011101 299 YVTFANNEFTGPIPSSIG-RAKYLLEVLFL--N----NFFTGC-----LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC- 365 (493)
Q Consensus 299 ~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~- 365 (493)
+|++..|.+++.....+. .+++|++|+++ + +.++.. ++..+..+++|++|+|++ .+++.....+..
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 445555555543333343 35666777776 2 333311 111245566777777765 555433334433
Q ss_pred CCCCCEEEcccCCCCCCcchhh-cCCCCCcEEeeeCCcCCCCCc--cccCCCCCCEEEeeCCcC
Q 011101 366 LSSMQYLNLAMNQFYGPVPEIV-CQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVLDVRMNCI 426 (493)
Q Consensus 366 l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l 426 (493)
+++|++|+|++|.+++.....+ ..+++|++|+|++|.+++... .+..+++|+.|++++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6777888888777765444444 557778888888887754321 234567788888888766
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=2.3e-14 Score=128.17 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=58.0
Q ss_pred CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101 159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS 233 (493)
Q Consensus 159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 233 (493)
.|.++.|.... .....+++.|++++|++++ ..+..+..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 56666665321 1122345555555555554 233334455555555555555554433444555555555555
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC
Q 011101 234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS 285 (493)
Q Consensus 234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~ 285 (493)
+|.+++..+..|..+++|++|+|++|.+++..+..+... +|++|+|++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555544444444455555555555555542222222222 4555555555544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1e-15 Score=133.00 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=54.5
Q ss_pred hhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCC-cchhhcCCCCC
Q 011101 315 IGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP-VPEIVCQLPKL 393 (493)
Q Consensus 315 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L 393 (493)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 33444445555555554433 4445555555555555555544555444455555555555555532 12445555555
Q ss_pred cEEeeeCCcCCCCCc----cccCCCCCCEEEee
Q 011101 394 VNLSLSYNYFTQVGP----ECRKLIKRKVLDVR 422 (493)
Q Consensus 394 ~~L~Ls~N~l~~~~~----~~~~l~~L~~L~L~ 422 (493)
++|++++|.+++++. .+..+++|+.|+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555555555543 34555555555543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=9.9e-15 Score=130.60 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=96.1
Q ss_pred hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEee
Q 011101 319 KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL 398 (493)
Q Consensus 319 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 398 (493)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 46788888888888666667788999999999999999666667889999999999999999777777888999999999
Q ss_pred eCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCC
Q 011101 399 SYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLP 430 (493)
Q Consensus 399 s~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp 430 (493)
++|+|++++.. +..+++|++|++++|.+....
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999998774 577999999999999988643
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=1.1e-14 Score=126.42 Aligned_cols=107 Identities=25% Similarity=0.314 Sum_probs=53.7
Q ss_pred cceEEEEcCCCCcC-CCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 174 KAVAGVDFNGYRFN-GPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 174 ~~l~~L~L~~n~l~-~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
.+++.|++++|.++ + .++..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.++..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 44555555555555 3 3444455555555555555555543 4455555555555555555544454444555555
Q ss_pred EEEcccccCCCC-CCcccccc-ccCEEEccCccCC
Q 011101 253 FLDLRFNSFSGP-VPAEIFYL-DLDVLFLNNNKFS 285 (493)
Q Consensus 253 ~L~Ls~n~l~~~-~p~~~~~~-~L~~L~L~~n~l~ 285 (493)
+|++++|.+++. .+..+... +|++|++++|.++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555555555431 11222222 4444444444443
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=5e-16 Score=165.57 Aligned_cols=84 Identities=10% Similarity=0.165 Sum_probs=49.3
Q ss_pred cceEEEEcCCCCcCCCCCccchhhh-CCCcCcEEEccCC-cCCCc-cCcccCCCCCCCEEECcCCCCCCCCccccc----
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLE-KLEDLAIFHANSN-NFTKS-IPKMTSKLKFLYELDVSNNKLFGGFPMEVV---- 246 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---- 246 (493)
.+++.|+|+++.+++ .....+. .+++|++|++++| .++.. ++..+.++++|++|+|++|.+++..+..+.
T Consensus 105 ~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 456777777776665 4444443 5667777777766 34321 333334567777777777766544333332
Q ss_pred CCCCCcEEEccccc
Q 011101 247 NIKNLTFLDLRFNS 260 (493)
Q Consensus 247 ~l~~L~~L~Ls~n~ 260 (493)
.+++|++|+|++|.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 45567777777665
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=3.4e-16 Score=142.97 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=55.3
Q ss_pred hhCCCcCcEEEccCCcCCCccCc------ccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccc
Q 011101 197 LEKLEDLAIFHANSNNFTKSIPK------MTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIF 270 (493)
Q Consensus 197 l~~l~~L~~L~L~~n~i~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 270 (493)
+.....++.++++.+.+++.++. .|..+++|++|++++|.+++ ++ .+..+++|++|+|++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45556677777777777766554 66667777777777777754 44 6666777777777777766 4554444
Q ss_pred cc-ccCEEEccCccCC
Q 011101 271 YL-DLDVLFLNNNKFS 285 (493)
Q Consensus 271 ~~-~L~~L~L~~n~l~ 285 (493)
.. +|++|++++|++.
T Consensus 91 ~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 91 VADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHCSEEEEEEEECC
T ss_pred cCCcCCEEECcCCcCC
Confidence 32 5666666666554
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.2e-14 Score=129.97 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=59.2
Q ss_pred cccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcch--hhcCCCCCcEEeeeCCcCCCCCcc----cc
Q 011101 338 EIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE--IVCQLPKLVNLSLSYNYFTQVGPE----CR 411 (493)
Q Consensus 338 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~----~~ 411 (493)
.|..+++|++|+|++|.+++..+..+..+++|++|+|++|+|+ .++. .+..+++|+.|++++|.++.++.. +.
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHH
Confidence 4455667777777777777433344466777777777777775 4444 566677777777777777766553 66
Q ss_pred CCCCCCEEEeeCCcCCC
Q 011101 412 KLIKRKVLDVRMNCILD 428 (493)
Q Consensus 412 ~l~~L~~L~L~~N~l~~ 428 (493)
.+++|+.||+++|.+..
T Consensus 138 ~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 138 KVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCSEETTEECCHHH
T ss_pred HCCccceeCCCcCCHHH
Confidence 67777777777775543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=8.8e-15 Score=144.49 Aligned_cols=242 Identities=9% Similarity=-0.003 Sum_probs=170.1
Q ss_pred ccceEEEEcCCCCcC--CCC---C------------ccchhhhC--------CCcCcEEEccCCcCCCccCcccCCCCCC
Q 011101 173 KKAVAGVDFNGYRFN--GPD---F------------SLSDFLEK--------LEDLAIFHANSNNFTKSIPKMTSKLKFL 227 (493)
Q Consensus 173 ~~~l~~L~L~~n~l~--~~~---~------------~~~~~l~~--------l~~L~~L~L~~n~i~~~~p~~~~~l~~L 227 (493)
..+|+.|||++|++. ... + .-...|.. +++|+.|+|.+ +++.+-..+|.+|.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 356888999988887 100 0 11235667 99999999999 8887777889999999
Q ss_pred CEEECcCCCCCCCCcccccCCCCCcEEEcccccC----CCCCCccccc-cccC-EEEccCccCCCCcccccc----cccc
Q 011101 228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF----SGPVPAEIFY-LDLD-VLFLNNNKFSQNLPENIG----STGA 297 (493)
Q Consensus 228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l----~~~~p~~~~~-~~L~-~L~L~~n~l~~~~p~~~~----~~~~ 297 (493)
++|++++|.++...+.+|.++.++.++.+..+.. ...-...+.. ..|+ .+.+.... .++..+. ....
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRD 203 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGG
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccc
Confidence 9999999999877788899888888887766322 1111111111 1444 34443322 1222211 0111
Q ss_pred c-hhhcccCcCCCCCchhh-hhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCC-EEEc
Q 011101 298 L-YVTFANNEFTGPIPSSI-GRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ-YLNL 374 (493)
Q Consensus 298 l-~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L 374 (493)
+ .+.+.++-.. .....+ ..+.+|+.|+|++|.++..-...|.++.+|+.|+|.+| ++..-...|.++.+|+ .|++
T Consensus 204 ~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 1 2223322111 111112 23678999999999999766788999999999999998 7766677899999999 9999
Q ss_pred ccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEe
Q 011101 375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDV 421 (493)
Q Consensus 375 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L 421 (493)
.+ .++.+....|.++.+|+.|++++|+++.+.. .|.++++|+.++.
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 7775667889999999999999999999876 7899999999874
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=5.5e-16 Score=141.54 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=40.0
Q ss_pred cCCCCCCCEEECcCCCCCCCCcc------cccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC
Q 011101 221 TSKLKFLYELDVSNNKLFGGFPM------EVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS 285 (493)
Q Consensus 221 ~~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~ 285 (493)
+.....++.++++.+.+++..+. .|..+++|++|+|++|.+++ ++ .+... +|++|++++|.+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 34445666666666666665554 67777778888887777774 55 33322 6666666666654
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.4e-13 Score=120.86 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=92.2
Q ss_pred hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101 321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 400 (493)
.+.|++++|.++ .+|..+ ..+|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356778888887 466555 37899999999999987788899999999999999999977777788999999999999
Q ss_pred CcCCCCCc-cccCCCCCCEEEeeCCcCCCCCC
Q 011101 401 NYFTQVGP-ECRKLIKRKVLDVRMNCILDLPN 431 (493)
Q Consensus 401 N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~ 431 (493)
|+|+++++ .+..+++|+.|+|++|.++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999877 58899999999999999987654
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=3.6e-13 Score=120.18 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=90.7
Q ss_pred HHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCC
Q 011101 322 LEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401 (493)
Q Consensus 322 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 401 (493)
+.+++++|.+. .+|..+. .+|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 35667777775 5666553 78999999999999877888999999999999999999766666788999999999999
Q ss_pred cCCCCCcc-ccCCCCCCEEEeeCCcCCCCCCC
Q 011101 402 YFTQVGPE-CRKLIKRKVLDVRMNCILDLPNQ 432 (493)
Q Consensus 402 ~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~ 432 (493)
+|+++++. +..+++|+.|+|++|.|...+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 99998774 88899999999999999887654
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.5e-13 Score=121.28 Aligned_cols=104 Identities=21% Similarity=0.161 Sum_probs=72.0
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCC-cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLE-DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~-~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 252 (493)
.+++.|++++|+++. ++. +..+. +|++|++++|.+++. ..|..+++|++|+|++|.|++..+..+..+++|+
T Consensus 19 ~~L~~L~l~~n~l~~----i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV----IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSCCCS----CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCceEEEeeCCCCch----hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 467888888888776 343 34343 788888888888754 5677788888888888887655444457778888
Q ss_pred EEEcccccCCCCCCc--ccccc-ccCEEEccCccCC
Q 011101 253 FLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNKFS 285 (493)
Q Consensus 253 ~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~l~ 285 (493)
+|+|++|.+. .++. .+... +|++|++++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 8888888775 4554 33333 6777777777765
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=1.3e-12 Score=132.41 Aligned_cols=226 Identities=11% Similarity=0.008 Sum_probs=169.0
Q ss_pred hhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccccc
Q 011101 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDL 274 (493)
Q Consensus 195 ~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L 274 (493)
.+|... +|+.+.+..+ ++.+-..+|.++ +|+.++|.. .++.....+|.++.+|+.++|++|.++......+...+|
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 456664 7999998766 665555677775 699999986 666666678999999999999999988333333444589
Q ss_pred CEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCC
Q 011101 275 DVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNN 353 (493)
Q Consensus 275 ~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 353 (493)
+.+.|..+ +......+|.++..+ .+.+..+ +...-..+|.+ .+|+.+.+ .+.++..-...|.++.+|+.+++.+|
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 99999854 665556677777666 7777664 44333445555 67888888 44566555678899999999999988
Q ss_pred CCC-----CCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCC
Q 011101 354 RLT-----GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 354 ~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~ 427 (493)
.+. ..-...|.++.+|+.++|.+ .++......|.++.+|+.++|..| ++.+.. +|..+ +|+.+++.+|.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 775 34556788999999999984 576556678889999999999655 777654 67888 9999999999888
Q ss_pred CCCC
Q 011101 428 DLPN 431 (493)
Q Consensus 428 ~lp~ 431 (493)
.++.
T Consensus 359 ~l~~ 362 (401)
T 4fdw_A 359 QVFE 362 (401)
T ss_dssp BCCC
T ss_pred cccc
Confidence 7764
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.8e-12 Score=115.10 Aligned_cols=106 Identities=23% Similarity=0.194 Sum_probs=90.6
Q ss_pred eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
.+.+++++|+++. +|..+ .++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 11 ~~~l~~s~n~l~~----ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLAS----VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSS----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCc----cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 4678999999987 66555 37899999999999988888999999999999999999877777789999999999
Q ss_pred cccccCCCCCCcccccc-ccCEEEccCccCCCC
Q 011101 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQN 287 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~ 287 (493)
|++|+|++..+..+... +|++|+|++|.+...
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999995555455554 999999999998743
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=2.2e-12 Score=130.56 Aligned_cols=241 Identities=13% Similarity=0.030 Sum_probs=179.0
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 253 (493)
.+++.+++..+ ++. .-..+|.. .+|+.+.+.. .++..-..+|.+|.+|+.++|++|.++......|. ..+|+.
T Consensus 135 ~~L~~i~l~~~-i~~---I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~ 207 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKS---IGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEE 207 (401)
T ss_dssp CCCSEEECCTT-CCE---ECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSE
T ss_pred CCccEEEeCCC-ccE---ECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCE
Confidence 35777887765 554 33455666 4799999986 67666667899999999999999999765555666 689999
Q ss_pred EEcccccCCCCCCcc-cccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101 254 LDLRFNSFSGPVPAE-IFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF 331 (493)
Q Consensus 254 L~Ls~n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (493)
+.|..+ +. .+... +... +|+.+++..| +......+|.+.....+.+ .+.+...-..+|.++.+|+.+.+.+|.+
T Consensus 208 l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 208 VLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccc
Confidence 999854 65 44443 3344 8999999875 4434445565533336666 4555545567888999999999988876
Q ss_pred c-----CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101 332 T-----GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 332 ~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
. ..-...|.++.+|+.++|. +.++..-...|.++.+|+.|+|..| ++......|.++ +|+.|++++|.+..+
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 5 3445788999999999999 4577566678999999999999665 665556788888 999999999998887
Q ss_pred Cc-cccCCC-CCCEEEeeCCcCCC
Q 011101 407 GP-ECRKLI-KRKVLDVRMNCILD 428 (493)
Q Consensus 407 ~~-~~~~l~-~L~~L~L~~N~l~~ 428 (493)
.. .|..++ +++.|++..+.+..
T Consensus 361 ~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 361 FEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CCSSCCCSCTTCCEEEECGGGHHH
T ss_pred ccccccCCCCCccEEEeCHHHHHH
Confidence 54 566664 78899988876543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=3.6e-12 Score=113.66 Aligned_cols=105 Identities=24% Similarity=0.198 Sum_probs=89.3
Q ss_pred eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101 176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255 (493)
Q Consensus 176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 255 (493)
.+.+++++++++. +|..+. ++|++|+|++|.|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 14 ~~~l~~~~n~l~~----iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLAS----VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCSS----CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCCCc----cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 3679999999986 666553 8999999999999988888999999999999999999876666788999999999
Q ss_pred cccccCCCCCCcccccc-ccCEEEccCccCCC
Q 011101 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ 286 (493)
Q Consensus 256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~ 286 (493)
|++|.|++..+..+... +|++|+|++|.+..
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99999995444445544 99999999999873
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.2e-11 Score=122.82 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=65.7
Q ss_pred Hhccc-cccCCCcccccCCCCCcEEEecC-CCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCc
Q 011101 325 LFLNN-FFTGCLPYEIGFLSNSTVFDVGN-NRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402 (493)
Q Consensus 325 ~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 402 (493)
+++++ .++ .+|. |..+++|++|+|++ |.|++..+..|..+.+|++|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 555 3555 66666777777764 77765555666677777777777777776666666677777777777777
Q ss_pred CCCCCccccCCCCCCEEEeeCCcCCC
Q 011101 403 FTQVGPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 403 l~~~~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
|+++++.+.....|+.|+|++|.|..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 77666543333337777777776664
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.1e-11 Score=120.89 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=89.2
Q ss_pred EEcCCC-CcCCCCCccchhhhCCCcCcEEEccC-CcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101 179 VDFNGY-RFNGPDFSLSDFLEKLEDLAIFHANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256 (493)
Q Consensus 179 L~L~~n-~l~~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 256 (493)
++++++ +++. +|. +..+++|+.|+|++ |.|++..+..|.++.+|++|+|++|+|++..+..|.++++|++|+|
T Consensus 13 v~~~~~n~l~~----ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALDS----LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCTT----TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCCc----cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 355555 6776 788 99999999999996 9999877788999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccccccCEEEccCccCCC
Q 011101 257 RFNSFSGPVPAEIFYLDLDVLFLNNNKFSQ 286 (493)
Q Consensus 257 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~ 286 (493)
++|+|++..+..+....|++|+|.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 999999544444555589999999999874
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.1e-13 Score=138.69 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=43.1
Q ss_pred ccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCC----cchhhcCCCCCcEEeeeCCcCCCC
Q 011101 339 IGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGP----VPEIVCQLPKLVNLSLSYNYFTQV 406 (493)
Q Consensus 339 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 406 (493)
+...++|++|+|++|.|++. +...+...++|++|+|++|.|++. +...+...++|++|||++|.|++.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 34556677777777777632 244455666777777777777643 223344557777777777777653
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=5.2e-13 Score=133.89 Aligned_cols=159 Identities=14% Similarity=0.054 Sum_probs=107.4
Q ss_pred CCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhh
Q 011101 248 IKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYL 321 (493)
Q Consensus 248 l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L 321 (493)
+..|++|+|++|.++......+.. .+|++|+|++|.+.......+ ...+.+|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l----------------------~~~L~~L 128 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL----------------------LPVFLRA 128 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT----------------------HHHHHTE
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH----------------------HHHHHhc
Confidence 356778888888776432222211 267777777777653221111 1223455
Q ss_pred HHHHhccccccCCCcccc-----cCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCCc----chhhc
Q 011101 322 LEVLFLNNFFTGCLPYEI-----GFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGPV----PEIVC 388 (493)
Q Consensus 322 ~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~ 388 (493)
++|+|++|.++......+ ....+|++|+|++|.|+.. +...+..+++|++|+|++|.|++.. ...+.
T Consensus 129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 666666666653322222 2457899999999999742 4445577899999999999997532 45567
Q ss_pred CCCCCcEEeeeCCcCCCCC-----ccccCCCCCCEEEeeCCcCCC
Q 011101 389 QLPKLVNLSLSYNYFTQVG-----PECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 389 ~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~L~~N~l~~ 428 (493)
..++|+.|+|++|.|++.. ..+...++|++|+|++|.|+.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7889999999999998642 245667899999999999876
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=6.4e-10 Score=110.66 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=56.5
Q ss_pred CCCCCcEEEecCCCCCCCCccccc---CCCCCCEEEcccCCCCCCc----chhhcCCCCCcEEeeeCCcCCCCC-ccccC
Q 011101 341 FLSNSTVFDVGNNRLTGPIPHSFG---CLSSMQYLNLAMNQFYGPV----PEIVCQLPKLVNLSLSYNYFTQVG-PECRK 412 (493)
Q Consensus 341 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~ 412 (493)
.+++|++|+|++|.+.+.....+. .+++|++|+|+.|.+++.. ...+..+++|+.|+|++|.|+... ..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467899999988888743332222 4678999999999887643 223345688999999999887632 12322
Q ss_pred -CCCCCEEEeeCCc
Q 011101 413 -LIKRKVLDVRMNC 425 (493)
Q Consensus 413 -l~~L~~L~L~~N~ 425 (493)
+ ...++++.|+
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3568888886
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=4.8e-08 Score=98.47 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=128.1
Q ss_pred hhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccccc
Q 011101 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDL 274 (493)
Q Consensus 195 ~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L 274 (493)
.+|..+.+|+.+.+..+. ...-...|.++.+|+.+++..+ ++......|.++..|+.+.+..+... .....+...+|
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence 346666777777775443 2233455667777777777655 33344456666777776666554432 11222223366
Q ss_pred CEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCC
Q 011101 275 DVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNN 353 (493)
Q Consensus 275 ~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 353 (493)
+.+.+..+. .......+..+..+ .+.+..+... .....+..+..++.+.+..+.+. ...|..+.+|+.+.+.++
T Consensus 233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT
T ss_pred ceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc
Confidence 666664332 21222233333333 3333333221 22334455555555444443322 245677888888888765
Q ss_pred CCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCC
Q 011101 354 RLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMN 424 (493)
Q Consensus 354 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N 424 (493)
++..-...|.++.+|+.++|..+ ++.....+|.++.+|+.+++..| ++.+.. +|.++.+|+.+++..+
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 55344567888888998888654 55445667888888999888776 766644 6788888998888754
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=4.4e-09 Score=104.61 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=107.0
Q ss_pred CcCcEEEccCCcCCC-c-------cCcccCCCCCCCEEECcCCCCC---------CCCcccccCCCCCcEEEcccccCCC
Q 011101 201 EDLAIFHANSNNFTK-S-------IPKMTSKLKFLYELDVSNNKLF---------GGFPMEVVNIKNLTFLDLRFNSFSG 263 (493)
Q Consensus 201 ~~L~~L~L~~n~i~~-~-------~p~~~~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~ 263 (493)
..++.|.+....+.+ . +..+...+++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467788887665542 1 1233455778888888665331 123344456677777777766311
Q ss_pred CCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCC
Q 011101 264 PVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLS 343 (493)
Q Consensus 264 ~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 343 (493)
.++. +...+|+.|+|..|.+... . ++.|. ...++
T Consensus 186 ~l~~-~~~~~L~~L~L~~~~l~~~--------------------------~------l~~l~-------------~~~lp 219 (362)
T 2ra8_A 186 SIGK-KPRPNLKSLEIISGGLPDS--------------------------V------VEDIL-------------GSDLP 219 (362)
T ss_dssp BCCS-CBCTTCSEEEEECSBCCHH--------------------------H------HHHHH-------------HSBCT
T ss_pred eecc-ccCCCCcEEEEecCCCChH--------------------------H------HHHHH-------------HccCC
Confidence 2222 2233666666655444310 0 01110 11456
Q ss_pred CCcEEEecC--CCCCCC-----Ccccc--cCCCCCCEEEcccCCCCCCcchhhc---CCCCCcEEeeeCCcCCCC-----
Q 011101 344 NSTVFDVGN--NRLTGP-----IPHSF--GCLSSMQYLNLAMNQFYGPVPEIVC---QLPKLVNLSLSYNYFTQV----- 406 (493)
Q Consensus 344 ~L~~L~Ls~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----- 406 (493)
+|+.|+|+. |...+. +...+ ..+++|++|+|++|.+.+.....+. .+++|++|+|+.|.|++.
T Consensus 220 ~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L 299 (362)
T 2ra8_A 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299 (362)
T ss_dssp TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence 777777753 221111 11222 2478999999999998754444443 478999999999999873
Q ss_pred CccccCCCCCCEEEeeCCcCCC
Q 011101 407 GPECRKLIKRKVLDVRMNCILD 428 (493)
Q Consensus 407 ~~~~~~l~~L~~L~L~~N~l~~ 428 (493)
...+..+++|+.|+|++|.|+.
T Consensus 300 ~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 300 LDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HTTHHHHTTCSEEECCSBBCCH
T ss_pred HhhcccCCcceEEECCCCcCCH
Confidence 2234668999999999998764
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=2.8e-07 Score=92.81 Aligned_cols=56 Identities=11% Similarity=-0.039 Sum_probs=33.5
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN 234 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~ 234 (493)
.+|+.+.|.. .++. .-..+|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..
T Consensus 71 ~~L~~i~lp~-~i~~---I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 71 RKVTEIKIPS-TVRE---IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTEEEEECCT-TCCE---ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCceEEEeCC-CccC---cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 4677777753 3444 33456777777777777644 4433345566666666655543
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=1.8e-07 Score=94.26 Aligned_cols=85 Identities=7% Similarity=0.047 Sum_probs=42.7
Q ss_pred ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCC
Q 011101 337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIK 415 (493)
Q Consensus 337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~ 415 (493)
..|.++.+|+.+.+. +.++..-...|.++.+|+.++|..+ ++.....+|.++.+|+.+.|..+ ++.+.. +|.++.+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 344455555555553 2333233344555556666665543 33233445555566666666433 444433 4555666
Q ss_pred CCEEEeeCC
Q 011101 416 RKVLDVRMN 424 (493)
Q Consensus 416 L~~L~L~~N 424 (493)
|+.+++.+|
T Consensus 359 L~~i~~~~~ 367 (394)
T 4gt6_A 359 LNNIEYSGS 367 (394)
T ss_dssp CCEEEESSC
T ss_pred CCEEEECCc
Confidence 666665554
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.53 E-value=2.6e-07 Score=93.04 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=72.1
Q ss_pred hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCC
Q 011101 314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL 393 (493)
Q Consensus 314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 393 (493)
.|.++.+|+.+.+. +.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++.....+|.++.+|
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 34455566666554 3344344567889999999999865 55455678999999999999755 665667889999999
Q ss_pred cEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC
Q 011101 394 VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426 (493)
Q Consensus 394 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l 426 (493)
+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 360 ~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH--HTCBCCCCC----------
T ss_pred CEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 999999886432 3567778899888877654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=9.1e-09 Score=92.35 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=82.8
Q ss_pred hhhhhhhhHHHHhccc-cccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCC--
Q 011101 314 SIGRAKYLLEVLFLNN-FFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGP-- 382 (493)
Q Consensus 314 ~l~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-- 382 (493)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444566777777777 66532 234456678899999999998743 344455667899999999999753
Q ss_pred --cchhhcCCCCCcEEee--eCCcCCCC-----CccccCCCCCCEEEeeCCcCC
Q 011101 383 --VPEIVCQLPKLVNLSL--SYNYFTQV-----GPECRKLIKRKVLDVRMNCIL 427 (493)
Q Consensus 383 --~p~~l~~l~~L~~L~L--s~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~ 427 (493)
+...+....+|++|+| ++|.|+.. ...+....+|++|+|++|.|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455667788999999 88998863 234566788999999999775
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=4.7e-08 Score=92.51 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=55.8
Q ss_pred cCCCCCcEEEecCCCCCC--CCcccccCCCCCCEEEcccCCCCCCcchhhcCCC--CCcEEeeeCCcCCCCCc-------
Q 011101 340 GFLSNSTVFDVGNNRLTG--PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP--KLVNLSLSYNYFTQVGP------- 408 (493)
Q Consensus 340 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~~------- 408 (493)
.++++|+.|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456788888888888886 3445666788888888888888754 2233333 78888888888876321
Q ss_pred -cccCCCCCCEEE
Q 011101 409 -ECRKLIKRKVLD 420 (493)
Q Consensus 409 -~~~~l~~L~~L~ 420 (493)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 256677887775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=7.3e-08 Score=86.39 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=60.9
Q ss_pred cceEEEEcCCC-CcCCCC-CccchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----Ccc
Q 011101 174 KAVAGVDFNGY-RFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----FPM 243 (493)
Q Consensus 174 ~~l~~L~L~~n-~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~ 243 (493)
..++.|+|++| .+.... ..+...+...+.|++|+|++|.|... +...+...+.|++|+|++|.|... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 34666777776 665411 01234455566677777777766532 223344456677777777766532 234
Q ss_pred cccCCCCCcEEEc--ccccCCCCCCccccc-----cccCEEEccCccCC
Q 011101 244 EVVNIKNLTFLDL--RFNSFSGPVPAEIFY-----LDLDVLFLNNNKFS 285 (493)
Q Consensus 244 ~l~~l~~L~~L~L--s~n~l~~~~p~~~~~-----~~L~~L~L~~n~l~ 285 (493)
.+...++|++|+| ++|.|.......+.. .+|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555566777777 666665332222211 25666666666653
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=1.4e-05 Score=79.74 Aligned_cols=93 Identities=8% Similarity=0.017 Sum_probs=62.8
Q ss_pred cccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCC
Q 011101 336 PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLI 414 (493)
Q Consensus 336 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~ 414 (493)
...|..+.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++......|.++.+|+.+.+.++.++.+.. .|.++.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 345666777888877665 44344556677778888887654 443344567778888888888887777654 677788
Q ss_pred CCCEEEeeCCcCCCCCC
Q 011101 415 KRKVLDVRMNCILDLPN 431 (493)
Q Consensus 415 ~L~~L~L~~N~l~~lp~ 431 (493)
+|+.+.|..+ ++.+..
T Consensus 311 ~L~~i~lp~~-l~~I~~ 326 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQV 326 (379)
T ss_dssp TCCEEECCTT-CCEECT
T ss_pred CCCEEEcCcc-ccEEHH
Confidence 8888887644 555543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.3e-07 Score=89.45 Aligned_cols=106 Identities=23% Similarity=0.159 Sum_probs=72.7
Q ss_pred HHHhccccccCCCcc-cccCCCCCcE--EEecCCCCCCCCccc----ccCCCCCCEEEcccCCCCC--CcchhhcCCCCC
Q 011101 323 EVLFLNNFFTGCLPY-EIGFLSNSTV--FDVGNNRLTGPIPHS----FGCLSSMQYLNLAMNQFYG--PVPEIVCQLPKL 393 (493)
Q Consensus 323 ~L~L~~n~l~~~~p~-~l~~l~~L~~--L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L 393 (493)
.|...+|..++.+.- .|...+.|+. ++++.|... .++.. ...+++|++|+|++|+|++ .++..+..+++|
T Consensus 120 ~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L 198 (267)
T 3rw6_A 120 IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 198 (267)
T ss_dssp HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTC
T ss_pred HHHhccchhccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCC
Confidence 344455555544332 2444445554 666777543 22222 2467899999999999997 345667789999
Q ss_pred cEEeeeCCcCCCCCccccCCC--CCCEEEeeCCcCCC-CC
Q 011101 394 VNLSLSYNYFTQVGPECRKLI--KRKVLDVRMNCILD-LP 430 (493)
Q Consensus 394 ~~L~Ls~N~l~~~~~~~~~l~--~L~~L~L~~N~l~~-lp 430 (493)
+.|+|++|+|+++ ..+..+. +|++|+|++|.+++ +|
T Consensus 199 ~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 199 KILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 9999999999987 3333444 99999999999975 44
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.9e-06 Score=74.58 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=63.9
Q ss_pred CCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCC-CCCCcchhhcCC----CCCcEEeeeCCc-CCCC-CccccCCCC
Q 011101 343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ-FYGPVPEIVCQL----PKLVNLSLSYNY-FTQV-GPECRKLIK 415 (493)
Q Consensus 343 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~-~~~~~~l~~ 415 (493)
-.|+.||++++.|+..--..+..+++|++|+|++|. |++..-..+..+ ++|++|+|++|. |++. ...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468899999988886656667788889999999984 775555556654 368999999874 7763 235677888
Q ss_pred CCEEEeeCCc-CCC
Q 011101 416 RKVLDVRMNC-ILD 428 (493)
Q Consensus 416 L~~L~L~~N~-l~~ 428 (493)
|+.|+|+++. |++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999998863 443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.1e-06 Score=75.58 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=59.1
Q ss_pred cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCc-CCCccCcccCCC----CCCCEEECcCCC-CCCCCcccccC
Q 011101 174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNN-FTKSIPKMTSKL----KFLYELDVSNNK-LFGGFPMEVVN 247 (493)
Q Consensus 174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~ 247 (493)
.+|+.||++++.++. .--..+..+++|++|+|++|. |+..--..++.+ ++|++|+|++|. +|+.--..+..
T Consensus 61 ~~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 468888888888876 344557788888888888884 665433445553 368888888874 66544445667
Q ss_pred CCCCcEEEccccc
Q 011101 248 IKNLTFLDLRFNS 260 (493)
Q Consensus 248 l~~L~~L~Ls~n~ 260 (493)
+++|++|+|++|.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 7888888888775
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=0.0001 Score=73.32 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=81.6
Q ss_pred ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCC
Q 011101 337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIK 415 (493)
Q Consensus 337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~ 415 (493)
..+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++......+.++.+|+.+.+..+ ++.+.. .|..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 44566778888888655 33244567778899999999776 55455567888899999999654 666544 6889999
Q ss_pred CCEEEeeCCcCCCCCCC-CCchhhcccccCCCCCCCCCCCcccCCCCCCC
Q 011101 416 RKVLDVRMNCILDLPNQ-RSREECGKFFSESKKCPNERSLTLVPCARNRS 464 (493)
Q Consensus 416 L~~L~L~~N~l~~lp~~-~~~~~~~~~~~~~~~c~~~~~~~~~~C~~~~~ 464 (493)
|+.+.+.++.++.+++. |....-+.-+..+.........-+.+|.+...
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALST 337 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCE
Confidence 99999999989888653 32222222222233333333344455554443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=4.7e-05 Score=68.17 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=44.4
Q ss_pred ceEEEEcCCC-CcCCCC-CccchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----Cccc
Q 011101 175 AVAGVDFNGY-RFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----FPME 244 (493)
Q Consensus 175 ~l~~L~L~~n-~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~ 244 (493)
.++.|+|+++ +|.... ..+-..+..-+.|+.|+|++|.|... +.+.+..-+.|++|+|++|.|... +...
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 3666666664 554311 01234455556666677766666532 223333445666666666666432 2223
Q ss_pred ccCCCCCcEEEcccc
Q 011101 245 VVNIKNLTFLDLRFN 259 (493)
Q Consensus 245 l~~l~~L~~L~Ls~n 259 (493)
+..-+.|++|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 344455666666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00038 Score=62.21 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=27.1
Q ss_pred ccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCCc----chhhcCCCCCcEEeeeC
Q 011101 339 IGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGPV----PEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 339 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~ 400 (493)
+..-+.|+.|+|++|.|.+. +.+.+..-+.|++|+|++|.|.+.. -..+..-..|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 33444555555555555421 2222333344555555555554321 12233334455555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0035 Score=52.05 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=24.9
Q ss_pred EEEecCCCCC-CCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcC
Q 011101 347 VFDVGNNRLT-GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYF 403 (493)
Q Consensus 347 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 403 (493)
.++.+++.++ ..+|..+. .+|++|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4445555543 22333222 2355555555555533333444445555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0047 Score=51.31 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=16.5
Q ss_pred CCEEECcCCCCCCCCcccccCCCCCcEEEcccccC
Q 011101 227 LYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261 (493)
Q Consensus 227 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 261 (493)
|++|+|++|+|+...+..|..+.+|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333444445555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.77 E-value=27 Score=26.69 Aligned_cols=47 Identities=13% Similarity=-0.066 Sum_probs=28.8
Q ss_pred cCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccc
Q 011101 212 NFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN 259 (493)
Q Consensus 212 ~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 259 (493)
.++.+-...|.++.+|+.+.|-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444456777777777777654 34444556777777777776553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.56 E-value=52 Score=25.07 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=16.1
Q ss_pred cccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400 (493)
Q Consensus 362 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 400 (493)
.|.++.+|+.+.|-.+ ++.+....|.++.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444444444444332 2223333444444454444443
Done!