BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011102
(493 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224086056|ref|XP_002307797.1| predicted protein [Populus trichocarpa]
gi|222857246|gb|EEE94793.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/474 (65%), Positives = 375/474 (79%), Gaps = 28/474 (5%)
Query: 33 MAHSNQRRRPTTTRHPKLPKNLQNPRRTKLPPDFGVNLFLKKPSDEYDPIKADSVEEQEA 92
MAHS+ R + K+PKN++ PRR+KLPPDFGVNLFLKKP + DSV++
Sbjct: 1 MAHSSTR-----ICYRKIPKNIRYPRRSKLPPDFGVNLFLKKP-------QTDSVQDHSD 48
Query: 93 D--------------NDFIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPL 138
D + +WESEE+EAISSLF+GRIPQKPG+L RERPLPLP+P++LRPL
Sbjct: 49 DLTEEEEEEEIEVNNGEIVWESEEIEAISSLFRGRIPQKPGKLGRERPLPLPVPYKLRPL 108
Query: 139 ELPTPKKRVC--LASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRK 196
LP PKK V ++ SRASI Q+YKNPSFLI LA++IK L +DV+ VLD C R+L K
Sbjct: 109 GLPAPKKHVNKQVSLSRASISSQIYKNPSFLIGLAKEIKRLSPDQDVSVVLDNCSRYLHK 168
Query: 197 GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN 256
GSLS T+RELGH+ LPERALQTFCW QKQP LFPDDR+LASTVEVLAR+H+LKVPF LE
Sbjct: 169 GSLSLTIRELGHLGLPERALQTFCWVQKQPRLFPDDRVLASTVEVLARNHDLKVPFNLEK 228
Query: 257 FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYM 316
F +LAS+ V+EA KG ++GG+LKL+WKL+ VAKDG RMLDPS+YAK+ILELGKNPDK++
Sbjct: 229 FTNLASRRVIEAMVKGLIRGGSLKLSWKLISVAKDGKRMLDPSVYAKIILELGKNPDKHV 288
Query: 317 LVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTL 376
L LLDEL +R+DLNLSQQDCTA+MKV I+L KF VESLF+WF SG +P+VVMYTTL
Sbjct: 289 LAEALLDELAEREDLNLSQQDCTAVMKVCIKLGKFEAVESLFNWFRQSGHEPSVVMYTTL 348
Query: 377 IHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
IHSR SE K REAL VVW ME S+CLFDL AYRVVIKLFVALND+ RA+RYFSKLKEAG
Sbjct: 349 IHSRYSESKYREALAVVWEMEGSDCLFDLTAYRVVIKLFVALNDLPRAVRYFSKLKEAGL 408
Query: 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRI 490
PTYDIYR++I ++M SGRLAKC++V KEAEMAGFK K+ LLQ+++E+R+
Sbjct: 409 SPTYDIYRNLITLYMVSGRLAKCKEVWKEAEMAGFKFSKEMAAGLLQLKRETRL 462
>gi|255539244|ref|XP_002510687.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551388|gb|EEF52874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 469
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 324/472 (68%), Positives = 376/472 (79%), Gaps = 17/472 (3%)
Query: 33 MAHSNQRRRPTTTRHPKLPKNLQNPRRTKLPPDFGVNLFLKKPSDEYDPIKADSV----- 87
M+HSN + T KLPKNLQ+PRR+KLPPDFGVNLFLKKP+ DP + DS
Sbjct: 1 MSHSNTK----TYYRKKLPKNLQSPRRSKLPPDFGVNLFLKKPTTGVDPFQMDSFLVDDG 56
Query: 88 ------EEQEADNDFIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELP 141
EE+E + D +WES+E+EAISSLFQGRIPQ+PG L RERPLPLPLPH+LRPL P
Sbjct: 57 DGDLNQEEKEQNGDIVWESDEIEAISSLFQGRIPQRPGNLNRERPLPLPLPHKLRPLGPP 116
Query: 142 TPKK--RVCLASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSL 199
+PKK R + S R+ IC +VYKNPSFLISLA+ IK L+ DV+ VLD C RFLRKGSL
Sbjct: 117 SPKKHNRNVVVSLRSPICNKVYKNPSFLISLAKQIKCLNPDDDVSAVLDDCARFLRKGSL 176
Query: 200 SFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS 259
S T+RELGHM P+RALQTFCWAQKQP L+PDDR+LASTVE+LAR+ +LKVP + F S
Sbjct: 177 SLTIRELGHMGFPDRALQTFCWAQKQPQLYPDDRILASTVEILARNQDLKVPIDWQKFTS 236
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
LAS+GV+EA +GF+KGG LKLAWKLL VAK RMLD S+YA+LILELGKNPDKYMLV
Sbjct: 237 LASRGVIEAMIRGFLKGGRLKLAWKLLAVAKHDKRMLDASLYARLILELGKNPDKYMLVE 296
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
LLDELG+R+DLNLS QDCTAIMKV IRLQKF VE LF WF SG +P+VVMYTTLIHS
Sbjct: 297 QLLDELGEREDLNLSHQDCTAIMKVCIRLQKFEFVECLFTWFKQSGHEPSVVMYTTLIHS 356
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
R SEKK REAL VW ME S+ LFDLPAYRVVIKLFVALND+ RA+RYFSKLKEAG PT
Sbjct: 357 RYSEKKYREALAGVWEMEGSSFLFDLPAYRVVIKLFVALNDLPRAVRYFSKLKEAGLSPT 416
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
YDIYR++I+I++ SGRLAKC+++ KEAEMAGFKLD+Q ++LL EKE R G
Sbjct: 417 YDIYRNLIKIYLVSGRLAKCKEIWKEAEMAGFKLDEQIKMDLLHQEKEIRSG 468
>gi|356519741|ref|XP_003528528.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01860-like [Glycine max]
Length = 478
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 305/491 (62%), Positives = 375/491 (76%), Gaps = 29/491 (5%)
Query: 1 MNCTLSYMSLHPVVLSNRIFPISKN--NNITTTLMAHSNQRRRPTTTRHPKLPKNLQNPR 58
M+CT+S+ +H V P+ + N T++AHS +RR P R+ PK
Sbjct: 1 MDCTVSFPCVHFV-------PVGRTLCNYRRVTVVAHSKRRRPPKDNRYRPRPKQ----- 48
Query: 59 RTKLPPDFGVNLFLKKPSDEYDPIKAD------SVEEQEADNDFIWESEELEAISSLFQG 112
PP+FGVNLFLKKPS P D + EE++ + +WES+ELEAISSLFQG
Sbjct: 49 ----PPEFGVNLFLKKPSTASKPTDDDMDSNEENDEEEDGNIGVVWESDELEAISSLFQG 104
Query: 113 RIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRV-----CLASSRASICKQVYKNPSFL 167
RIPQKPG+L RERPLPLP+P +LRPL LPTPK +V + SSRAS+ K+VYK+PSFL
Sbjct: 105 RIPQKPGKLDRERPLPLPVPFKLRPLRLPTPKTQVKLTAPAVVSSRASMAKKVYKSPSFL 164
Query: 168 ISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPH 227
+ LAR I L DV+++L K +FLRKGSLS T+RELGHM PERALQTF WAQ QPH
Sbjct: 165 VGLARQISRLGPDADVSKILGKWVQFLRKGSLSLTIRELGHMGFPERALQTFLWAQNQPH 224
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLM 287
LFPDD +LASTVEVLAR+HEL++PF L + LAS+ VLEA KGF+KGGNL+ AWK+L+
Sbjct: 225 LFPDDWILASTVEVLARNHELRIPFNLGQYTGLASRAVLEAMIKGFIKGGNLRFAWKVLI 284
Query: 288 VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347
VA+ RMLD SIYAKLILELGKNPD++ V+ LLDELG+RD+LNLSQQDCTAIMKV ++
Sbjct: 285 VARRDKRMLDSSIYAKLILELGKNPDRHRHVLPLLDELGERDELNLSQQDCTAIMKVCVK 344
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
+ KF VVESLF WF SG P++VM+T++IHSR +EKK REAL VVW MEASNCLFDLPA
Sbjct: 345 MGKFEVVESLFSWFKQSGYQPSIVMFTSVIHSRYTEKKYREALAVVWEMEASNCLFDLPA 404
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
YRVVIKLFVALND+SRA RYFSKLKEAGF P++ +Y+DM++I+MASGR+AKC+++C+EAE
Sbjct: 405 YRVVIKLFVALNDLSRATRYFSKLKEAGFSPSFGLYKDMLQIYMASGRIAKCKELCREAE 464
Query: 468 MAGFKLDKQTV 478
+AGFKLDK V
Sbjct: 465 IAGFKLDKYLV 475
>gi|147814819|emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera]
Length = 514
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 307/491 (62%), Positives = 369/491 (75%), Gaps = 26/491 (5%)
Query: 20 FPISKNNNITTTLMAHSNQRRRPTTTRHPKLPKNLQNPRRTKLPPDFGVNLFLKKPSDEY 79
F + +N L N R H K KNL +PRR KLPP+ ++ FLK +
Sbjct: 29 FVVEFSNKNEIKLGVQCNAR-----VNHRKPTKNLPHPRRAKLPPEPEISTFLKGGNSGT 83
Query: 80 DPIKADSVEEQEAD----------------NDFIWESEELEAISSLFQGRIPQKPGRLYR 123
+ + +V ++E D + +W+S+E+EAISSLF GRIPQKPG+L R
Sbjct: 84 EQSEMGTVLDKELDPNDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPGKLNR 143
Query: 124 ERPLPLPLPHRLRPLELPTPKKRVCLASS-----RASICKQVYKNPSFLISLARDIKGLD 178
ERPLPLPLP+++RP+ LPT K+ V ASS RAS+ KQVYKNP FLIS+AR+I+ L
Sbjct: 144 ERPLPLPLPYKIRPMGLPTTKRHVRAASSMPYASRASLSKQVYKNPDFLISIAREIRNLP 203
Query: 179 SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST 238
DV+ VL+K RFLRKGSLS T+RELGHM LPERALQTF WAQKQP LFPDDR+LAST
Sbjct: 204 LEDDVSPVLNKWVRFLRKGSLSLTIRELGHMGLPERALQTFFWAQKQPQLFPDDRILAST 263
Query: 239 VEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP 298
VEVLAR H+LKVPF LE F LA++ V+EA A+GF++ G+L LAWKLL+VAKD RML P
Sbjct: 264 VEVLARTHKLKVPFSLEKFTGLATRSVIEALARGFIRRGSLSLAWKLLLVAKDSKRMLGP 323
Query: 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358
SIYAKLI ELGKNPDK+ LV LLDELG+R+DL LS QDCTA+MKV IRL KF +VESLF
Sbjct: 324 SIYAKLIFELGKNPDKHSLVQALLDELGEREDLKLSHQDCTAVMKVCIRLGKFEIVESLF 383
Query: 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
+W+ S P+VVMYTTLIHSR +EKK REAL VVW MEAS+CLFDLPAYRVVIKLF+AL
Sbjct: 384 NWYKQSENSPSVVMYTTLIHSRYTEKKYREALAVVWEMEASDCLFDLPAYRVVIKLFIAL 443
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478
ND+SR RYFSKLKEAGF PTYDIYRDM++I+M RLAKCR+VCKE EM+GFKLDK T+
Sbjct: 444 NDLSRTGRYFSKLKEAGFSPTYDIYRDMLKIYMVFRRLAKCREVCKELEMSGFKLDKGTL 503
Query: 479 VELLQIEKESR 489
+LLQ+E+E+R
Sbjct: 504 SQLLQLERENR 514
>gi|356577063|ref|XP_003556649.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01860-like [Glycine max]
Length = 480
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 300/494 (60%), Positives = 374/494 (75%), Gaps = 29/494 (5%)
Query: 1 MNCTLSYMSLHPVVLSNRIFPISKN--NNITTTLMAHSNQRRRPTTTRHPKLPKNLQNPR 58
M+CT+S+ +H P+ + N TL+AHS +R+ R+ PK
Sbjct: 1 MDCTVSFPCVH-------FIPVGRTLCNYSRVTLVAHSKRRKPSKDNRYRPRPKQ----- 48
Query: 59 RTKLPPDFGVNLFLKKPSDEYDPIKAD------SVEEQEADNDFIWESEELEAISSLFQG 112
PP+FGVNLFLKKPS P + D + EE++ + +WES+ELEAISSLFQG
Sbjct: 49 ----PPEFGVNLFLKKPSTTSKPTEDDMDSNEENDEEEDGNIGVVWESDELEAISSLFQG 104
Query: 113 RIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRV-----CLASSRASICKQVYKNPSFL 167
RIPQKPG+L RERPLPLP+P++LRPL LPTPK +V + SSRAS+ K+VYK+P FL
Sbjct: 105 RIPQKPGKLDRERPLPLPVPYKLRPLGLPTPKTQVKLTAPAVVSSRASMAKKVYKSPRFL 164
Query: 168 ISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPH 227
+ LAR+I L +DV+++L K +FLRKGSLS T+RELGHM PERALQTF WAQ QPH
Sbjct: 165 VGLAREISRLGPDEDVSKILGKWVQFLRKGSLSLTIRELGHMGFPERALQTFLWAQNQPH 224
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLM 287
LFPDD +LASTVEVLAR+HEL++PF L + LAS+ VLEA KGF+KGGNL+LAWK+L+
Sbjct: 225 LFPDDWILASTVEVLARNHELRIPFNLNQYTGLASRVVLEAMIKGFIKGGNLRLAWKVLI 284
Query: 288 VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347
VA+ RMLD SIYAKLILELGKNPD++ V+ LLDEL +RD+LNLSQQDCTAIMKV ++
Sbjct: 285 VARRDKRMLDSSIYAKLILELGKNPDRHRHVLPLLDELAERDELNLSQQDCTAIMKVCVK 344
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
+ KF VVE LF WF SG +VVM+T++IHSR +EKK REAL VVW ME+S+CLFDLPA
Sbjct: 345 MGKFEVVECLFSWFKQSGYHTSVVMFTSVIHSRYTEKKYREALAVVWEMESSSCLFDLPA 404
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y VVIKLFVALND+SRA RYFSKLKEAGF P++ +Y+DM+ I+MASGR+AKC+++CKEAE
Sbjct: 405 YCVVIKLFVALNDLSRATRYFSKLKEAGFSPSFGLYKDMLHIYMASGRIAKCKELCKEAE 464
Query: 468 MAGFKLDKQTVVEL 481
M+GFKLDK V +L
Sbjct: 465 MSGFKLDKYLVSQL 478
>gi|225457564|ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01860-like [Vitis vinifera]
Length = 514
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/492 (63%), Positives = 369/492 (75%), Gaps = 28/492 (5%)
Query: 20 FPISKNNNITTTLMAHSNQRRRPTTTRHPKLPKNLQNPRRTKLPPDFGVNLFLK------ 73
F + +N L N R H K KNL +PRR KLPP+ ++ FLK
Sbjct: 29 FVVEFSNKNEIKLGVQCNAR-----VNHRKPTKNLPHPRRAKLPPEPEISTFLKGGNSGT 83
Query: 74 -----------KPSDEYDPIKADSVEEQEADNDFIWESEELEAISSLFQGRIPQKPGRLY 122
+P D D +E ++ + + +W+S+E+EAISSLF GRIPQKPG+L
Sbjct: 84 EQSEMGTVLDKEPDANDDGFLVDGIEGRK-EGEIVWDSDEIEAISSLFMGRIPQKPGKLN 142
Query: 123 RERPLPLPLPHRLRPLELPTPKKRVCLASS-----RASICKQVYKNPSFLISLARDIKGL 177
RERPLPLPLP++LRP+ LPT K+ V ASS RAS+ KQVYKNP FLIS+AR+I+ L
Sbjct: 143 RERPLPLPLPYKLRPMGLPTTKRHVRAASSMPYASRASLSKQVYKNPDFLISIAREIRKL 202
Query: 178 DSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAS 237
DV+ VL+K RFLRKGSLS T+RELGHM LPERALQTF WAQKQP LFPDDR+LAS
Sbjct: 203 PLEDDVSPVLNKWVRFLRKGSLSLTIRELGHMGLPERALQTFFWAQKQPQLFPDDRILAS 262
Query: 238 TVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD 297
TVEVLAR H+LKVPF LE F LAS+ V+EA A+GF++ G+L LAWKLL+VAKD RML
Sbjct: 263 TVEVLARTHKLKVPFSLEKFTGLASRSVIEALARGFIRRGSLSLAWKLLLVAKDSKRMLG 322
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
PSIYAKLI ELGKNPDK+ LV LLDELG+R+DL LS QDCTA+MKV IRL KF +VESL
Sbjct: 323 PSIYAKLIFELGKNPDKHSLVQALLDELGEREDLKLSHQDCTAVMKVCIRLGKFEIVESL 382
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F+W+ S P+VVMYTTLIHSR +EKK REAL VVW MEAS+C+FDLPAYRVVIKLF+A
Sbjct: 383 FNWYKQSENSPSVVMYTTLIHSRYTEKKYREALAVVWEMEASDCVFDLPAYRVVIKLFIA 442
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
LND+SR RYFSKLKEAGF PTYDIYRDM++I+M RLAKCR+VCKE EM+GFKLDK T
Sbjct: 443 LNDLSRTGRYFSKLKEAGFSPTYDIYRDMLKIYMVFRRLAKCREVCKELEMSGFKLDKGT 502
Query: 478 VVELLQIEKESR 489
+ +LLQ+EKE+R
Sbjct: 503 LSQLLQLEKENR 514
>gi|42568870|ref|NP_178295.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75110949|sp|Q5XET4.1|PP142_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01860; AltName: Full=Protein EMBRYO DEFECTIVE 975
gi|53850483|gb|AAU95418.1| At2g01860 [Arabidopsis thaliana]
gi|55733739|gb|AAV59266.1| At2g01860 [Arabidopsis thaliana]
gi|110738080|dbj|BAF00974.1| hypothetical protein [Arabidopsis thaliana]
gi|330250415|gb|AEC05509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 486
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/489 (60%), Positives = 372/489 (76%), Gaps = 16/489 (3%)
Query: 8 MSLH-PVVLSNRIFPISKNNNITTTLMAHSNQRRRPTTTRH--PKLPKNLQNPRRTKLPP 64
M LH PV LS +S + N+ T+ + + R + R+ KL KNL+NPRRTKLPP
Sbjct: 1 MILHCPVSLS-----LSFHLNLRTSRIGNIGVTRVNASQRNHSKKLTKNLRNPRRTKLPP 55
Query: 65 DFGVNLFLKKPSDEYDPIKADSVEEQEADND----FIWESEELEAISSLFQGRIPQKPGR 120
DFGVNLFL+KP E I D + QE+ ND +WE EE+EAISSLFQ RIPQKP +
Sbjct: 56 DFGVNLFLRKPKIEPLVIDDDDEQVQESVNDDDDAVVWEPEEIEAISSLFQKRIPQKPDK 115
Query: 121 LYRERPLPLPLPHRLRPLELPTPKKRVCLASSRASICKQVYKNPSFLISLARDIKGL-DS 179
R RPLPLP PH+LRPL LPTPKK + + + +S+ KQVYK+PSFLI LAR+IK L S
Sbjct: 116 PSRVRPLPLPQPHKLRPLGLPTPKKNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSS 175
Query: 180 HKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTV 239
DV+ VL+K FLRKGSLS T+RELGHM LPERALQT+ WA+K HL PD+R+LAST+
Sbjct: 176 DADVSLVLNKWVSFLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTI 235
Query: 240 EVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS 299
+VLA+HHELK+ K +N SLASK V+EA KG ++GG L LA KL++++K R+LD S
Sbjct: 236 QVLAKHHELKL-LKFDN--SLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSS 292
Query: 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359
+Y K+ILE+ KNPDKY LV+ LL+EL +R+DL LSQQDCT+IMK+ ++L +F +VESLF
Sbjct: 293 VYVKMILEIAKNPDKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFD 352
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
WF S R+P+VVMYTT+IHSR SE+K REA++VVW ME SNCL DLPAYRVVIKLFVAL+
Sbjct: 353 WFKASNREPSVVMYTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALD 412
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
D+ RA+RY+SKLKEAGF PTYDIYRDMI ++ ASGRL KC+++CKE E AG +LDK T
Sbjct: 413 DLGRAMRYYSKLKEAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSF 472
Query: 480 ELLQIEKES 488
LLQ+EK++
Sbjct: 473 RLLQLEKQT 481
>gi|297814426|ref|XP_002875096.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320934|gb|EFH51355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 486
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/448 (63%), Positives = 356/448 (79%), Gaps = 14/448 (3%)
Query: 49 KLPKNLQNPRRTKLPPDFGVNLFLKKPS-----DEYDPIKADSVEEQEA--DNDFIWESE 101
KL KNL+NPR TKLPPDFGVNLFL+KP D+YD + V++QE+ D+ +WE E
Sbjct: 40 KLTKNLRNPRLTKLPPDFGVNLFLRKPKIEPVVDDYD--ADNDVQDQESVDDDAVVWEPE 97
Query: 102 ELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLASSRASICKQVY 161
E+EAISSLFQ RIPQKPG+ R RPLPLP PH+LRPL LPTPKK + +++ +S+ KQVY
Sbjct: 98 EIEAISSLFQKRIPQKPGKPIRVRPLPLPQPHKLRPLGLPTPKKNI-RSAALSSVSKQVY 156
Query: 162 KNPSFLISLARDIKGL-DSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFC 220
K+PSFLI LAR+IK L S DV+ VL+K FLRKGSLS T+RELGHM LPERALQT+
Sbjct: 157 KDPSFLIGLAREIKSLPSSDADVSLVLNKWVSFLRKGSLSMTIRELGHMGLPERALQTYH 216
Query: 221 WAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLK 280
WA+K HL PD+R+LAST++VLA+HHELK+ K +N SLASK V+EA KG ++GG L
Sbjct: 217 WAEKHSHLVPDNRILASTIQVLAKHHELKL-LKFDN--SLASKNVIEAMIKGCIEGGWLN 273
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340
LA KL++++K R+LD S+Y K+ILE+ KNPDKY LV+TLL+EL +R+DL LSQQDCT
Sbjct: 274 LARKLILISKSNNRILDSSVYVKMILEIAKNPDKYHLVVTLLEELKEREDLRLSQQDCTG 333
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
IMK+ ++L +F +VESLF WF S R+P+VVMYTT+IHSR SE+K REA+ VVW ME SN
Sbjct: 334 IMKICVKLGEFELVESLFDWFKESNREPSVVMYTTMIHSRYSEQKYREAMNVVWEMEESN 393
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
CL DLPAYRVVIKLFVAL+D+ RA+RY+SKLKEAGF PTYDIYRDMI ++ ASGRL KC+
Sbjct: 394 CLLDLPAYRVVIKLFVALDDLGRAMRYYSKLKEAGFLPTYDIYRDMINVYTASGRLTKCK 453
Query: 461 DVCKEAEMAGFKLDKQTVVELLQIEKES 488
++CKE E AG +LDK T LLQ+EK++
Sbjct: 454 EICKEVEDAGLRLDKDTSFRLLQLEKQT 481
>gi|449516830|ref|XP_004165449.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g01860-like [Cucumis sativus]
Length = 489
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 287/471 (60%), Positives = 353/471 (74%), Gaps = 25/471 (5%)
Query: 33 MAH--SNQRRRPTTTRHPKLPKNLQNPRRTKLPPDFGVNLFLKKPSDEYDP--------- 81
M H +N RRRP PKNL PRR KLPP+ VN F + P
Sbjct: 27 MVHFKANSRRRP--------PKNLLCPRRAKLPPNPAVNQFFNNKTSAPSPPFTDLISSK 78
Query: 82 IKADSVEEQEA-----DNDFIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLR 136
I D EE A D D +W+S+E+EAISSLFQGRIPQKPG+L RERPLPLPLPH+LR
Sbjct: 79 IFQDEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHKLR 138
Query: 137 PLELPTPKKR-VCLASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLR 195
P LP PK R + SSRA + KQVYK P FLI LAR+I+ L ++V++VL++ G FL+
Sbjct: 139 PPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGLAREIRDLSPEENVSKVLNRWGPFLQ 198
Query: 196 KGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLE 255
KGSLS T++ELGHM LP+RAL TFCWAQ+Q LFPDDR+LASTVEVL+R+HELKVP LE
Sbjct: 199 KGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFPDDRVLASTVEVLSRNHELKVPVNLE 258
Query: 256 NFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
F LAS+GVLEA +GF++GG+L LAWKLL+ AK G RMLDPS+Y KLILELGKNPDK
Sbjct: 259 EFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELGKNPDKN 318
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
MLV+TLL+ELGQR+ L L+QQDCT I+KV RL KF + E L+ W+ SG +P++V+YT
Sbjct: 319 MLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKLYSWYVESGHEPSIVIYTA 378
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
L+HSR S++K REAL++VW ME+ NC FDLPAY VVIKLFVAL D+SRA+RYF+KLKEAG
Sbjct: 379 LVHSRYSDRKYREALSLVWEMESGNCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAG 438
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486
F PTY++YR+MI I++ SGRLAKC+++ KEAE AGF +DKQ LLQ ++
Sbjct: 439 FSPTYNVYRNMITIYLVSGRLAKCKEIYKEAENAGFMMDKQITSMLLQAKR 489
>gi|449443604|ref|XP_004139567.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01860-like [Cucumis sativus]
Length = 489
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/471 (60%), Positives = 352/471 (74%), Gaps = 25/471 (5%)
Query: 33 MAH--SNQRRRPTTTRHPKLPKNLQNPRRTKLPPDFGVNLFLKKPSDEYDP--------- 81
M H +N RRRP PKNL PRR KLPP+ VN F + P
Sbjct: 27 MVHFKANSRRRP--------PKNLLCPRRAKLPPNPAVNQFFNNKTSAPSPPFTDLISSK 78
Query: 82 IKADSVEEQEA-----DNDFIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLR 136
I D EE A D D +W+S+E+EAISSLFQGRIPQKPG+L RERPLPLPLPH+LR
Sbjct: 79 IFQDEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHKLR 138
Query: 137 PLELPTPKKR-VCLASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLR 195
P LP PK R + SSRA + KQVYK P FLI LAR+I+ L ++V++VL++ G FL+
Sbjct: 139 PPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGLAREIRDLSPEENVSKVLNRWGPFLQ 198
Query: 196 KGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLE 255
KGSLS T++ELGHM LP+RAL TFCWAQ+Q LFPDDR+LASTVEVL+R+HELKV LE
Sbjct: 199 KGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFPDDRVLASTVEVLSRNHELKVAVNLE 258
Query: 256 NFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
F LAS+GVLEA +GF++GG+L LAWKLL+ AK G RMLDPS+Y KLILELGKNPDK
Sbjct: 259 EFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELGKNPDKN 318
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
MLV+TLL+ELGQR+ L L+QQDCT I+KV RL KF + E L+ W+ SG +P++VMYT
Sbjct: 319 MLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKLYSWYVESGHEPSIVMYTA 378
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
L+HSR S++K REAL++VW ME+ NC FDLPAY VVIKLFVAL D+SRA+RYF+KLKEAG
Sbjct: 379 LVHSRYSDRKYREALSLVWEMESGNCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAG 438
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486
F PTY++YR+MI I++ SGRLAKC+++ KEAE AGF +DKQ LLQ ++
Sbjct: 439 FSPTYNVYRNMITIYLVSGRLAKCKEIYKEAENAGFMMDKQITSMLLQAKR 489
>gi|242035177|ref|XP_002464983.1| hypothetical protein SORBIDRAFT_01g029910 [Sorghum bicolor]
gi|241918837|gb|EER91981.1| hypothetical protein SORBIDRAFT_01g029910 [Sorghum bicolor]
Length = 489
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/420 (53%), Positives = 286/420 (68%), Gaps = 11/420 (2%)
Query: 76 SDEYDPIKADS-VEEQEADNDFIWESEELEAISSLFQGRI---PQKPGRLYRERPLPLPL 131
S+ D I A++ EE + D IW EE++AIS+LF + P KP R+R LPLPL
Sbjct: 65 SEFSDEIYAENGAEEDDETEDLIWSKEEIDAISALFDRPMRQKPLKPPNPARQRALPLPL 124
Query: 132 PHRLRPLELPTPKKRVCLA-----SSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEV 186
PH+ R P PK+ V LA SSRAS+ QV KNP FL+ ++R+I L DV+ V
Sbjct: 125 PHKTRLPVAPAPKQHVRLAARAGLSSRASVSDQVRKNPEFLLGISREIAVLPPEHDVSTV 184
Query: 187 LDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPH--LFPDDRLLASTVEVLAR 244
LD+ RFLRKGSLS T+RELGHM LPERALQT CWAQ+Q LFPDDR+LAS +EVLAR
Sbjct: 185 LDRWARFLRKGSLSLTIRELGHMGLPERALQTLCWAQRQKAVPLFPDDRVLASAIEVLAR 244
Query: 245 HHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKL 304
+L+V LE V AS+ VLEA A GF++ G + KLL +A+ R L PSIY KL
Sbjct: 245 FDQLRVDSALEQCVPTASRAVLEAMASGFIRAGKVDRVRKLLELARINNRTLHPSIYVKL 304
Query: 305 ILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS 364
+LE + P+ Y L L+DELG+R DL L QDCTA+MKV I+L+++ VESLF WF S
Sbjct: 305 MLEATRTPEGYGLASALVDELGERPDLELRPQDCTAVMKVCIKLRRYAAVESLFSWFRES 364
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
PTVVMYTT+IHSR + + REAL++VW ME + CL DLPAYRV++KL VAL D RA
Sbjct: 365 TGSPTVVMYTTVIHSRCRDGRHREALSLVWEMEQAGCLLDLPAYRVIVKLCVALQDPERA 424
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+RY S++KEAGF PT D+Y +I ++A GRLAKCR + K+AE AG KLD++ + +L I
Sbjct: 425 LRYLSRMKEAGFIPTGDMYDSLIEGYLADGRLAKCRQLIKDAESAGVKLDRRLLSQLSGI 484
>gi|293333527|ref|NP_001167980.1| uncharacterized protein LOC100381697 [Zea mays]
gi|195616488|gb|ACG30074.1| pentatricopeptide repeat protein PPR566-6 [Zea mays]
gi|223945269|gb|ACN26718.1| unknown [Zea mays]
gi|413955292|gb|AFW87941.1| pentatricopeptide repeat protein PPR566-6 [Zea mays]
Length = 501
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/407 (53%), Positives = 275/407 (67%), Gaps = 10/407 (2%)
Query: 85 DSVEEQEADNDFIWESEELEAISSLFQGRI---PQKPGRLYRERPLPLPLPHRLRPLELP 141
+ EE + D IW EE++AIS+LF + P KP R+R LPLPLPH+ R P
Sbjct: 87 NGAEEDDETEDLIWSKEEIDAISALFDRPMRQKPLKPRNPARQRALPLPLPHKTRLPVAP 146
Query: 142 TPKKRVCLA-----SSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRK 196
PK+ V LA SSRA QV K P FL+ +AR+I L DV+ VLD+ RFLRK
Sbjct: 147 APKQHVRLAARAGLSSRACFSDQVRKKPEFLLGIAREIAALPPEHDVSTVLDRWARFLRK 206
Query: 197 GSLSFTVRELGHMNLPERALQTFCWAQKQPH--LFPDDRLLASTVEVLARHHELKVPFKL 254
GSLS T+RELGHM LPERALQT CWAQ+Q LFPDDR+LAS +EVLAR L+V L
Sbjct: 207 GSLSLTIRELGHMGLPERALQTLCWAQRQKAVPLFPDDRVLASAIEVLARFERLRVESAL 266
Query: 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK 314
E V AS+ VLEA A GF++ G + KLL +A+ R L PSIY KL+LE + P+
Sbjct: 267 EQCVPTASRAVLEAMASGFIRAGKVDRVRKLLELARINNRTLHPSIYVKLMLEATRTPEG 326
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
Y L L+DELG+R +L L QDCTA+MKV IRL+++ VESLF WF + PTVVMYT
Sbjct: 327 YGLASALVDELGERPELELRPQDCTAVMKVCIRLRRYAAVESLFSWFRGAIGSPTVVMYT 386
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
T+IHSR + + REAL++VW ME + CL DLPAYRV++KL VAL+D RA+RY S++KEA
Sbjct: 387 TVIHSRCRDGRHREALSLVWEMEQAGCLLDLPAYRVIVKLCVALHDPGRALRYLSRMKEA 446
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481
GF PT D+Y +I ++A GRLAKCR + ++AE AG KLD++ + L
Sbjct: 447 GFIPTGDMYDSLIEGYLADGRLAKCRQLIRDAESAGVKLDRRLLSRL 493
>gi|357138479|ref|XP_003570819.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01860-like [Brachypodium distachyon]
Length = 478
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/410 (53%), Positives = 279/410 (68%), Gaps = 10/410 (2%)
Query: 84 ADSVEEQEADND----FIWESEELEAISSLFQGRI---PQKPGRLYRERPLPLPLPHRLR 136
DSV ++ + W +E+EAIS+LF + P KP RPLPLPL H+ R
Sbjct: 65 GDSVAAEDGGKEEALPLGWSKDEMEAISALFDRPMRQKPLKPPNPVTLRPLPLPLAHKTR 124
Query: 137 PLELPTPKKRVCLASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRK 196
P PK+ + LAS R+S +V KNP L+ +AR+I L DVA VLD+ FLRK
Sbjct: 125 LPVAPAPKQHIRLAS-RSSYSDRVRKNPEVLVGIAREISALRPESDVAIVLDRWAPFLRK 183
Query: 197 GSLSFTVRELGHMNLPERALQTFCWAQKQPH--LFPDDRLLASTVEVLARHHELKVPFKL 254
GSLS T+RELGHM LPERALQT CWAQKQ LFP+DR+LASTVEVLAR EL++ L
Sbjct: 184 GSLSMTIRELGHMGLPERALQTLCWAQKQTAVPLFPNDRILASTVEVLARFDELRMESAL 243
Query: 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK 314
E+ V AS+ VLEA A GF++ G + LA K+L +AK R L PSIYAKLILE + P+
Sbjct: 244 EDCVPTASRVVLEAMASGFIRAGKVGLARKVLELAKINKRTLHPSIYAKLILEAARTPEG 303
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
Y L LLDELG+R D +L QDCTA+MKV I+L+++ VESLF WF SGR+PTVVMYT
Sbjct: 304 YGLAAALLDELGERPDFDLRPQDCTAVMKVCIKLRRYTAVESLFSWFRESGRNPTVVMYT 363
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
T+IHSR + + R+AL +VW ME +NCL DLPAYRVV+KL V L+D RA RY S+LK+
Sbjct: 364 TVIHSRSRDGRHRDALALVWEMEQANCLLDLPAYRVVVKLCVELHDPERAFRYLSRLKDD 423
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
GF PT D+Y ++I + A+GR+AKCR + +EAE G LDK+ V L ++
Sbjct: 424 GFVPTSDMYCNLIEGYAAAGRMAKCRQLIREAESTGVMLDKRLVSSLSEM 473
>gi|115443825|ref|NP_001045692.1| Os02g0118000 [Oryza sativa Japonica Group]
gi|41052841|dbj|BAD07732.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|41053245|dbj|BAD07613.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535223|dbj|BAF07606.1| Os02g0118000 [Oryza sativa Japonica Group]
Length = 486
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/401 (51%), Positives = 272/401 (67%), Gaps = 11/401 (2%)
Query: 98 WESEELEAISSLFQGRI---PQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA---- 150
W +EL+AIS+LF + P KP R+RPLPLPLPH+ R P PK+ + LA
Sbjct: 82 WSKDELDAISALFDRPMRQKPPKPPNPVRQRPLPLPLPHKTRLPNAPAPKQHIRLAARAA 141
Query: 151 -SSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHM 209
SSR+S QV KNP LI +AR+I L DV+ VLD+ RFLRKGSLS T+RELGHM
Sbjct: 142 LSSRSSFSDQVCKNPEVLIGIAREIAALPPESDVSIVLDRWVRFLRKGSLSMTIRELGHM 201
Query: 210 NLPERALQTFCWAQKQP--HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE 267
LPERALQT CWAQ+Q LFPDDR+LAST+EVLAR +LK+ LE V AS+ VLE
Sbjct: 202 GLPERALQTLCWAQRQTVVPLFPDDRILASTIEVLARFDQLKMEDALEQCVPSASRAVLE 261
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A GF++ G + LA KLL A R L PS++ KL+LE + P+ Y L LLDELG+
Sbjct: 262 AMVSGFIRAGKVGLARKLLEFATINKRTLSPSVHVKLMLEAVRTPEGYGLAAALLDELGE 321
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R +L++ QQDCTA+MKV ++L+++ VESLF WF +G PTVVMYT +IHSR + + R
Sbjct: 322 RPELHVRQQDCTAVMKVCVKLRRYAAVESLFGWFRDTGGRPTVVMYTAVIHSRCRDGRHR 381
Query: 388 EALTVVWNME-ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EAL++ W ME + L DLPAYRV++KL VAL D R +RY +++K+AGF PT D+Y +
Sbjct: 382 EALSLAWEMERHAGGLLDLPAYRVLVKLCVALRDHERGVRYLARMKDAGFVPTGDMYGGL 441
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
I + A GR+ +CR + +EAE+AG KL+++ + L ++ E
Sbjct: 442 IGGYAAEGRMGRCRRLIREAELAGVKLERRLLSRLSEMGVE 482
>gi|125537825|gb|EAY84220.1| hypothetical protein OsI_05602 [Oryza sativa Indica Group]
Length = 486
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/401 (51%), Positives = 272/401 (67%), Gaps = 11/401 (2%)
Query: 98 WESEELEAISSLFQGRI---PQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA---- 150
W +EL+AIS+LF + P KP R+RPLPLPLPH+ R P PK+ + LA
Sbjct: 82 WSKDELDAISALFDRPMRQKPPKPPNPVRQRPLPLPLPHKTRLPNAPAPKQHIRLAARAA 141
Query: 151 -SSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHM 209
SSR+S QV KNP LI +AR+I L DV+ VLD+ RFLRKGSLS T+RELGHM
Sbjct: 142 LSSRSSFSDQVCKNPEVLIGIAREIAALPPESDVSIVLDRWVRFLRKGSLSMTIRELGHM 201
Query: 210 NLPERALQTFCWAQKQP--HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE 267
LPERALQT CWAQ+Q LFPDDR+LAST+EVLAR +LK+ LE V AS+ VLE
Sbjct: 202 GLPERALQTLCWAQRQTVVPLFPDDRILASTIEVLARFDQLKMEDALEQCVPSASRAVLE 261
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A GF++ G + LA KLL A R L PS++ KL+LE + P+ Y L LLDELG+
Sbjct: 262 AMVSGFIRAGKVGLARKLLEFATINKRTLSPSVHVKLMLEAVRTPEGYGLAAALLDELGE 321
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R +L++ QQDCTA+MKV ++L+++ VESLF WF +G PTVVMYT +IHSR + + R
Sbjct: 322 RPELHVRQQDCTAVMKVCVKLRRYAAVESLFGWFRDTGGRPTVVMYTAVIHSRCRDGRHR 381
Query: 388 EALTVVWNME-ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EAL++ W ME + L DLPAYRV++KL VAL D R +RY +++K+AGF PT D+Y +
Sbjct: 382 EALSLAWEMERHAGGLLDLPAYRVLVKLCVALRDHERGVRYLARMKDAGFVPTGDMYGGL 441
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
I + A GR+ +CR + +EAE+AG KL+++ + L ++ E
Sbjct: 442 IGGYAAEGRMGRCRRLIREAELAGVKLERRLLSRLSEMGVE 482
>gi|222622050|gb|EEE56182.1| hypothetical protein OsJ_05133 [Oryza sativa Japonica Group]
Length = 975
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 252/374 (67%), Gaps = 11/374 (2%)
Query: 98 WESEELEAISSLFQGRI---PQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA---- 150
W +EL+AIS+LF + P KP R+RPLPLPLPH+ R P PK+ + LA
Sbjct: 235 WSKDELDAISALFDRPMRQKPPKPPNPVRQRPLPLPLPHKTRLPNAPAPKQHIRLAARAA 294
Query: 151 -SSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHM 209
SSR+S QV KNP LI +AR+I L DV+ VLD+ RFLRKGSLS T+RELGHM
Sbjct: 295 LSSRSSFSDQVCKNPEVLIGIAREIAALPPESDVSIVLDRWVRFLRKGSLSMTIRELGHM 354
Query: 210 NLPERALQTFCWAQKQP--HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE 267
LPERALQT CWAQ+Q LFPDDR+LAST+EVLAR +LK+ LE V AS+ VLE
Sbjct: 355 GLPERALQTLCWAQRQTVVPLFPDDRILASTIEVLARFDQLKMEDALEQCVPSASRAVLE 414
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A GF++ G + LA KLL A R L PS++ KL+LE + P+ Y L LLDELG+
Sbjct: 415 AMVSGFIRAGKVGLARKLLEFATINKRTLSPSVHVKLMLEAVRTPEGYGLAAALLDELGE 474
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R +L++ QQDCTA+MKV ++L+++ VESLF WF +G PTVVMYT +IHSR + + R
Sbjct: 475 RPELHVRQQDCTAVMKVCVKLRRYAAVESLFGWFRDTGGRPTVVMYTAVIHSRCRDGRHR 534
Query: 388 EALTVVWNME-ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EAL++ W ME + L DLPAYRV++KL VAL D R +RY +++K+AGF PT D+Y +
Sbjct: 535 EALSLAWEMERHAGGLLDLPAYRVLVKLCVALRDHERGVRYLARMKDAGFVPTGDMYGGL 594
Query: 447 IRIFMASGRLAKCR 460
I + A GR+ +
Sbjct: 595 IGGYAAEGRMGSLK 608
>gi|326514474|dbj|BAJ96224.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 407
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 183/322 (56%), Positives = 224/322 (69%), Gaps = 6/322 (1%)
Query: 98 WESEELEAISSLFQG---RIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLASSRA 154
W +E+EAIS+LF R P KP RPLPLPLPH+ RP P P + + LAS R+
Sbjct: 83 WSKDEIEAISALFSRPMRRKPVKPPNPATRRPLPLPLPHKTRPPVTPVPTQHIRLAS-RS 141
Query: 155 SICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPER 214
S +V KNP L+ +AR+I L V +VLD+ FLRKGSLS T+RELGHM LPER
Sbjct: 142 SFSDKVRKNPDVLVGIAREIAALPPESGVCKVLDRWVHFLRKGSLSMTIRELGHMGLPER 201
Query: 215 ALQTFCWAQKQPH--LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKG 272
ALQT CWAQ Q LFPDDR+LAST+EVLAR ELK+ LE V AS+ VLEA A+G
Sbjct: 202 ALQTLCWAQGQKAVLLFPDDRILASTIEVLARFDELKMESALEECVPSASRAVLEAMARG 261
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F++ G + LA KLL +AK R L PSIYAKLILE+ + P+ Y L LLDELG+R D +
Sbjct: 262 FIRAGKVGLARKLLELAKMNKRTLHPSIYAKLILEVARTPEGYGLAAALLDELGERPDFD 321
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
L QDCTA+MKV I+L+++ VESLF WF SG +P VVMYTT+IHSR + + REAL +
Sbjct: 322 LRPQDCTAVMKVCIKLRRYAAVESLFSWFRGSGGNPNVVMYTTVIHSRSRDGRHREALAL 381
Query: 393 VWNMEASNCLFDLPAYRVVIKL 414
VW ME +NCL DLPAYRV++KL
Sbjct: 382 VWEMEQANCLLDLPAYRVIVKL 403
>gi|125537819|gb|EAY84214.1| hypothetical protein OsI_05596 [Oryza sativa Indica Group]
Length = 377
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 184/343 (53%), Positives = 232/343 (67%), Gaps = 11/343 (3%)
Query: 98 WESEELEAISSLFQGRI---PQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA---- 150
W +EL+AIS+LF + P KP R+RPLPLPLPH+ R P PK+ + LA
Sbjct: 33 WSKDELDAISALFDRPMRQKPPKPPNPVRQRPLPLPLPHKTRLPNAPAPKQHIRLAARAA 92
Query: 151 -SSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHM 209
SSR+S QV KNP LI +AR+I L DV+ VLD+ RFLRKGSLS T+RELGHM
Sbjct: 93 LSSRSSFSDQVCKNPEVLIGIAREIAALPPESDVSIVLDRWVRFLRKGSLSMTIRELGHM 152
Query: 210 NLPERALQTFCWAQKQP--HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE 267
LPERALQT CWAQ+Q LFPDDR+LAST+EVLAR +LK+ LE V AS+ VLE
Sbjct: 153 GLPERALQTLCWAQRQTVVPLFPDDRILASTIEVLARFDQLKMEDALEQCVPSASRAVLE 212
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A GF++ G + LA KLL A R L PS++ KL+LE + P+ Y L LLDELG+
Sbjct: 213 AMVSGFIRAGKVGLARKLLEFATINKRTLSPSVHVKLMLEAVRTPEGYGLAAALLDELGE 272
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R +L+L QQDCTA+MKV ++L+++ VESLF WF +G PTVVMYT +IHSR + + R
Sbjct: 273 RPELHLRQQDCTAVMKVCVKLRRYAAVESLFGWFRDTGGRPTVVMYTAVIHSRCRDGRHR 332
Query: 388 EALTVVWNME-ASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
EAL++ W ME + L DLPAYRV++KL VAL D R +RY +
Sbjct: 333 EALSLAWEMERHAGGLLDLPAYRVLVKLCVALRDHERGVRYLA 375
>gi|4522011|gb|AAD21784.1| hypothetical protein [Arabidopsis thaliana]
Length = 190
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 125/185 (67%), Positives = 156/185 (84%)
Query: 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363
+ILE+ KNPDKY LV+ LL+EL +R+DL LSQQDCT+IMK+ ++L +F +VESLF WF
Sbjct: 1 MILEIAKNPDKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKA 60
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
S R+P+VVMYTT+IHSR SE+K REA++VVW ME SNCL DLPAYRVVIKLFVAL+D+ R
Sbjct: 61 SNREPSVVMYTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGR 120
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A+RY+SKLKEAGF PTYDIYRDMI ++ ASGRL KC+++CKE E AG +LDK T LLQ
Sbjct: 121 AMRYYSKLKEAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQ 180
Query: 484 IEKES 488
+EK++
Sbjct: 181 LEKQT 185
>gi|255539240|ref|XP_002510685.1| hypothetical protein RCOM_1601210 [Ricinus communis]
gi|223551386|gb|EEF52872.1| hypothetical protein RCOM_1601210 [Ricinus communis]
Length = 151
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 102/121 (84%)
Query: 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA 268
M P+RALQTFCWAQKQP L+PDDR+LASTVE+LAR+ +LKVP + F SLAS+GV+EA
Sbjct: 1 MGFPDRALQTFCWAQKQPQLYPDDRILASTVEILARNQDLKVPIDWQKFTSLASRGVIEA 60
Query: 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328
+GF+KGG LKLAWKLL VAK RMLD S+YA+LILELGKNPDKYMLV LLDELG+R
Sbjct: 61 MIRGFLKGGRLKLAWKLLAVAKHDKRMLDASLYARLILELGKNPDKYMLVEQLLDELGER 120
Query: 329 D 329
+
Sbjct: 121 E 121
>gi|168059063|ref|XP_001781524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695176|dbj|BAD67153.1| PpPPR_41 [Physcomitrella patens]
gi|162667003|gb|EDQ53643.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 182/377 (48%), Gaps = 31/377 (8%)
Query: 123 RERPLPLPLPHRL-RPLELPTPKKRVCLASSRASICKQVYKNPSF-----LISLARDIKG 176
R R LP+P+PH+L RP+ +P ++ S + PS +S R +
Sbjct: 194 RGRSLPIPMPHKLNRPIPMPPSRRSFLPHGPVPSTAVRRDVGPSLSTKSDTLSYPRLLSK 253
Query: 177 L--DSHKDVAEVLD--KCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDD 232
+ S +V VL+ K ++G+++ + +LG + +ALQ F W ++Q L+PDD
Sbjct: 254 ILVVSDDEVRMVLELWKGRSRCKRGAIANLILQLGRWDSAGKALQLFAWVREQGRLWPDD 313
Query: 233 RLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDG 292
+L + + V +L + K S A +V+ G + AW++L +
Sbjct: 314 SILLAIIRVALESRKLTLANKFMTIYGPLSPESALVAASVYVEQGFIYDAWRILKSLEQR 373
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD-------DLNLSQQDCTAIMKVG 345
G + +YAK+I++ G E G RD L S +DCT +M V
Sbjct: 374 GVTANSELYAKMIVKAG--------------EAGARDIVEDIVAGLCFSLEDCTRVMTVC 419
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
RL VE+L+ F G P +VM+T L+ +R R+AL + W ME DL
Sbjct: 420 SRLGLDEEVEALYLRFLEQGLKPNIVMFTALMQARARAGNVRQALALFWEMEEQGVKPDL 479
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
A RV+I+L + D+++A++ ++ ++ AGF PT D+Y MIR++ GRLAK ++V +E
Sbjct: 480 VACRVMIRLCEKVGDLNKAVKVYNNMRMAGFVPTSDVYNVMIRLYCKEGRLAKVKEVMRE 539
Query: 466 AEMAGFKLDKQTVVELL 482
EM G T LL
Sbjct: 540 MEMWGCSPTSDTSKNLL 556
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 127/311 (40%), Gaps = 33/311 (10%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR 233
I GL + VA+VLD + F V+ +G N +RAL+ F W + P+ R
Sbjct: 119 ILGLRPDQFVADVLDDSKVQMTPTDFCFVVKWVGQENW-QRALEVFEWLNLRHWYSPNAR 177
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG 293
+LA+ + VL + ++ +E F+ E+T V+ N ++ V G
Sbjct: 178 MLATILAVLGKANQ--EALAVEIFIRA------ESTVDNTVQVYN-----AMMGVYARTG 224
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
R +K ++ L+ E G DL A +K G +
Sbjct: 225 RF-----------------NKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAI 267
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
L + SG P ++ Y TLI + E EA+ V +MEA C DL Y +I
Sbjct: 268 --ELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMIS 325
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ +A + F +L+ G+ P Y ++ F G + K +++C E GF
Sbjct: 326 VYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIR 385
Query: 474 DKQTVVELLQI 484
D+ T ++ +
Sbjct: 386 DEMTYNTIIHM 396
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+S+ I+ R+ + ++ +G PT+ +Y +I K+ R+
Sbjct: 836 FQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVE 895
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+V ME + DL + +++L+ ++D + ++ + ++KE G P D Y +I ++
Sbjct: 896 AMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMY 955
Query: 451 MASGRLAKCRD 461
CRD
Sbjct: 956 --------CRD 958
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F+ G PTV L+ + + + + E V ++ + +++ F
Sbjct: 791 AVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAF 850
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+++I+ A + + +K AG+ PT +YR MI + R+ + E E AGF+ D
Sbjct: 851 ARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPD 909
>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 39/314 (12%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR 233
I GL S + VA+VLD + F V+ +G + +RAL+ + W + P+ R
Sbjct: 106 ILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSW-QRALEVYEWLNLRHWYSPNAR 164
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG 293
+LA+ + VL + ++ + +E A+ GN + +M
Sbjct: 165 MLATILSVLGKANQEAL--------------AVEIFARAEAASGNTVQVYNAMM------ 204
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGIRLQK 350
+YA+ ++ V LLD + R DL A +K G +
Sbjct: 205 -----GVYAR--------TGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTN 251
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
+ L + SG P ++ Y TLI + E EA+ V +M A C DL Y
Sbjct: 252 LAI--ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNA 309
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I ++ A R F L+ GF P Y ++ F G + K +++C++ G
Sbjct: 310 MISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMG 369
Query: 471 FKLDKQTVVELLQI 484
F D+ T ++ +
Sbjct: 370 FGKDEMTYNTIIHM 383
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 39/314 (12%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR 233
I GL S + VA+VLD + F V+ +G + +RAL+ + W + P+ R
Sbjct: 131 ILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSW-QRALEVYEWLNLRHWYSPNAR 189
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG 293
+LA+ + VL + ++ + +E A+ GN + +M
Sbjct: 190 MLATILSVLGKANQEAL--------------AVEIFARAEAASGNTVQVYNAMM------ 229
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGIRLQK 350
+YA+ ++ V LLD + R DL A +K G +
Sbjct: 230 -----GVYAR--------TGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTN 276
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
+ L + SG P ++ Y TLI + E EA+ V +M A C DL Y
Sbjct: 277 LAI--ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNA 334
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I ++ A R F L+ GF P Y ++ F G + K +++C++ G
Sbjct: 335 MISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMG 394
Query: 471 FKLDKQTVVELLQI 484
F D+ T ++ +
Sbjct: 395 FGKDEMTYNTIIHM 408
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 24/262 (9%)
Query: 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV-------SLA 261
M PE A A+++ LF D + +E + LK+ K E+ V ++
Sbjct: 724 MGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGK---LKLWQKAESLVGSLRQKCTMV 780
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLL-MVAKDGGRMLDPSIYAKL-ILELGKNPDKYMLVM 319
+ V A + G + A + + +DG S+ + L + D+ +V+
Sbjct: 781 DRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVI 840
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
L ++G +S+ T ++ V+ ++ +G PT+ +Y +I
Sbjct: 841 QELQDMG----FKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGL 896
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
K+ R+ +V ME + DL + V+KL+ + D + + + ++EAG P
Sbjct: 897 LAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPD 956
Query: 440 YDIYRDMIRIFMASGRLAKCRD 461
D Y +I ++ CRD
Sbjct: 957 EDTYNTLILMY--------CRD 970
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL H G +P + Y +LI + + +A + + + C D Y +++K+F
Sbjct: 978 SLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMF 1037
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ S+A + +KEAG PT ++ + SG+ + V ++ G L
Sbjct: 1038 RNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPL 1095
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 39/314 (12%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR 233
I GL S + VA+VLD + F V+ +G + +RAL+ + W + P+ R
Sbjct: 163 ILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSW-QRALEVYEWLNLRHWYSPNAR 221
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG 293
+LA+ + VL + ++ + +E A+ GN + +M
Sbjct: 222 MLATILSVLGKANQEALA--------------VEIFARAEAAXGNTVQVYNAMM------ 261
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGIRLQK 350
+YA+ ++ V LLD + R DL A +K G +
Sbjct: 262 -----GVYAR--------TGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTN 308
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
+ L + SG P ++ Y TLI + E EA+ V +M A C DL Y
Sbjct: 309 LAI--ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNA 366
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I ++ A R F L+ GF P Y ++ F G + K +++C++ G
Sbjct: 367 MISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMG 426
Query: 471 FKLDKQTVVELLQI 484
F D+ T ++ +
Sbjct: 427 FGKDEMTYNTIIHM 440
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 24/262 (9%)
Query: 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV-------SLA 261
M PE A A+++ LF D + +E + LK+ K E+ V ++
Sbjct: 756 MGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGK---LKLWQKAESLVGSLRQKCTMV 812
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLL-MVAKDGGRMLDPSIYAKL-ILELGKNPDKYMLVM 319
+ V A + G + A + + +DG S+ + L + D+ +V+
Sbjct: 813 DRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVI 872
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
L ++G +S+ T ++ V+ ++ +G PT+ +Y +I
Sbjct: 873 QELQDMG----FKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGL 928
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
K+ R+ +V ME + DL + V+KL+ + D + + + ++EAG P
Sbjct: 929 LAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPD 988
Query: 440 YDIYRDMIRIFMASGRLAKCRD 461
D Y +I ++ CRD
Sbjct: 989 EDTYNTLILMY--------CRD 1002
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 121/320 (37%), Gaps = 46/320 (14%)
Query: 169 SLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHL 228
LA + L V +VLD G ++F VR +G + RAL F W +
Sbjct: 130 GLADAVLALPPGAPVDDVLD--GARATPDEVAFVVRAVGESSW-RRALDAFEWLARSTA- 185
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG----VLEATAKGFVKGGNLKLAWK 284
P R +A + VL R + + E F+ A +G V A + + G A +
Sbjct: 186 -PASRAVAVVLGVLGRARQDSIAE--EVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQ 242
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344
LL D G +DP + + TL++ S+ C A
Sbjct: 243 LLDTMHDRG--IDPDLVS---------------FNTLINAR--------SKSGCLAA--- 274
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
GV L SG P V+ Y TLI + +A+TV M AS C D
Sbjct: 275 -------GVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPD 327
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L Y ++ + A R F +L E GF P Y ++ F G + K C+
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCE 387
Query: 465 EAEMAGFKLDKQTVVELLQI 484
E AGFK ++ T ++ +
Sbjct: 388 ELVKAGFKKNEITYNTMIHM 407
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F +G PTV ++ + + + + E VV ++ + +++ F
Sbjct: 801 AVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAF 860
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
D+ ++ ++ +K AG+ P +YR M + R + E E AGFK D
Sbjct: 861 AKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDL 920
Query: 476 QTVVELLQI 484
LL +
Sbjct: 921 SIFNSLLNM 929
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Query: 314 KYMLVMTLLDEL----GQRDDLNLSQQDCTAIMKVGIRLQKFGVVE--SLFHWFTHSGRD 367
+ ++V LDEL G+ D++ T ++ + + V E +++ +G
Sbjct: 823 RALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYL 882
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P + +Y ++ + R+ ++ ME + DL + ++ ++ A + R +
Sbjct: 883 PNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQV 942
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ + EAG P D Y +I ++ S R
Sbjct: 943 YQSILEAGLEPDEDTYNTLIVMYCRSLR 970
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 6/287 (2%)
Query: 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST-VEVLARHHELKVPFKLENFVS 259
+ +RELG+ ERALQ + W +Q HL + LAS + L R ++++ + N
Sbjct: 168 YLLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQ 227
Query: 260 LASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
A G A + + G + A K+ K G + Y +I GK
Sbjct: 228 KAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDL 287
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
+ + DE+ Q++ + + +++ V R + + +F G + + + T
Sbjct: 288 KQALDIFDEM-QKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNT 346
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
LI + + A +++ M N ++ Y +I + L AI + +KE+G
Sbjct: 347 LIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESG 406
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
P Y +I I+ GR CK+ E G K D T L+
Sbjct: 407 VRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALI 453
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query: 350 KFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G E SL+H SG P V Y TLI + +AL +ME D+
Sbjct: 388 KLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVV 447
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I + A F K+K G P Y +I + +G +V E
Sbjct: 448 TYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEF 507
Query: 467 EMAGFKLD 474
+ AG K D
Sbjct: 508 KRAGLKPD 515
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 118/306 (38%), Gaps = 46/306 (15%)
Query: 183 VAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242
V +VLD G ++F VR +G + RAL F W + P R +A + VL
Sbjct: 144 VDDVLD--GARASPDEVAFVVRAVGESSW-RRALDAFEWLARSSA--PASRAVAVVLGVL 198
Query: 243 ARHHELKVPFKLENFVSLASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP 298
R + + E F+ A +G V A + + G A +LL D G +DP
Sbjct: 199 GRARQDSIA--EEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRG--IDP 254
Query: 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358
+ + TL++ S+ C A GV L
Sbjct: 255 DLVS---------------FNTLINAR--------SKSGCLAA----------GVALDLL 281
Query: 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
SG P V+ Y TLI + +A+TV +M AS C DL Y ++ +
Sbjct: 282 FEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRC 341
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478
A R F +L E GF P Y ++ F G + K C++ AGFK ++ T
Sbjct: 342 GKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITY 401
Query: 479 VELLQI 484
++ +
Sbjct: 402 NTMIHM 407
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 55/129 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F +G PTV ++ + + + + E VV ++ N +++ F
Sbjct: 801 AVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAF 860
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
D+ ++ ++ +K AG+ P +YR MI + R + E E AGFK D
Sbjct: 861 AKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDL 920
Query: 476 QTVVELLQI 484
+ LL +
Sbjct: 921 AILNALLNM 929
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 118/306 (38%), Gaps = 46/306 (15%)
Query: 183 VAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242
V +VLD G ++F VR +G + RAL F W + P R +A + VL
Sbjct: 144 VDDVLD--GARASPDEVAFVVRAVGESSW-RRALDAFEWLARSSA--PASRAVAVVLGVL 198
Query: 243 ARHHELKVPFKLENFVSLASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP 298
R + + E F+ A +G V A + + G A +LL D G +DP
Sbjct: 199 GRARQDSIA--EEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRG--IDP 254
Query: 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358
+ + TL++ S+ C A GV L
Sbjct: 255 DLVS---------------FNTLINAR--------SKSGCLAA----------GVALDLL 281
Query: 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
SG P V+ Y TLI + +A+TV +M AS C DL Y ++ +
Sbjct: 282 FEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRC 341
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478
A R F +L E GF P Y ++ F G + K C++ AGFK ++ T
Sbjct: 342 GKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITY 401
Query: 479 VELLQI 484
++ +
Sbjct: 402 NTMIHM 407
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 55/129 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F +G PTV ++ + + + + E VV ++ N +++ F
Sbjct: 801 AVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAF 860
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
D+ ++ ++ +K AG+ P +YR MI + R + E E AGFK D
Sbjct: 861 AKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDL 920
Query: 476 QTVVELLQI 484
+ LL +
Sbjct: 921 AILNALLNM 929
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 6/287 (2%)
Query: 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST-VEVLARHHELKVPFKLENFVS 259
+ +RELG+ ERALQ + W +Q HL + LAS + L R ++++ + N
Sbjct: 167 YLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQ 226
Query: 260 LASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
A G A + + G + A K+ K G + Y +I GK
Sbjct: 227 KAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDL 286
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
+ + +E+ Q++ + + +++ V R + + +F G + + Y T
Sbjct: 287 KKALDIFEEM-QKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNT 345
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
LI + + A +++ +M N ++ Y +I + L AI + +KE+G
Sbjct: 346 LIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESG 405
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
P Y +I I+ GR CK+ E G K D T L+
Sbjct: 406 VRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALI 452
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 3/128 (2%)
Query: 350 KFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G E L+H SG P V Y TLI + +ALT +ME D+
Sbjct: 387 KLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVV 446
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I + A F K+K G P Y +I + +G + E
Sbjct: 447 TYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEF 506
Query: 467 EMAGFKLD 474
+ AG K D
Sbjct: 507 KRAGLKPD 514
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 126/311 (40%), Gaps = 33/311 (10%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR 233
I GL + VA+VLD + L F V+ +G + RAL+ + W + P+ R
Sbjct: 163 ILGLTQDQFVADVLDDRKVQMTPTDLCFVVKSVGQESW-HRALEVYEWLNLRHWYSPNAR 221
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG 293
+L++ + VL + N +LA + + A G +++ ++ V G
Sbjct: 222 MLSTILSVLGK----------ANQEALAVEVFMRAEPSA---GNTVQVYNAMMGVYARRG 268
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
R +K ++ L+ E G + DL A +K G + +
Sbjct: 269 RF-----------------NKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAI 311
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
L + SG P + Y TLI + EA V +MEA +C DL Y +I
Sbjct: 312 --ELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMIS 369
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ +A + F+ L+ GF P Y ++ F G + K +++ +E GF
Sbjct: 370 VYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGK 429
Query: 474 DKQTVVELLQI 484
D+ T ++ +
Sbjct: 430 DEMTYNTMIHM 440
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 6/164 (3%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
D+ +V+ L ++G +S+ ++ R V+ ++H +G PT+ +
Sbjct: 865 DELYVVVQELQDMG----FKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHL 920
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y + K+ R+ ++ ME + DL + V+K++VA+ D + I+ + ++K
Sbjct: 921 YRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIK 980
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF--KLD 474
E G P D Y +I ++ R + + E +AG KLD
Sbjct: 981 EDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLD 1024
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
Query: 350 KFGVVESLFHWFTHSGRDP----TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G E+ H + D + +Y +I + K ++A +V N+ D
Sbjct: 754 KMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDR 813
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I+ + A RA F+ + G PT D +++ + GRL + V +E
Sbjct: 814 KVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQE 873
Query: 466 AEMAGFKLDKQTVVELLQIEKESRIGTI 493
+ GFK+ K ++ LL ++ +R G I
Sbjct: 874 LQDMGFKISKSSI--LLMLDAFARAGNI 899
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 3/215 (1%)
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP-SIYAKLILELGKNPDKYMLVM 319
AS+ + E+ + K G + A L+ A+ G +L+ S+Y +I G+ +
Sbjct: 740 ASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGR-LKLWQKAE 798
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
++ L QR + + ++ A+++ + ++F+ G PTV L+ +
Sbjct: 799 SVAGNLRQRC-ITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQA 857
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
+ + + E VV ++ + +++ F +I + + +K AG+ PT
Sbjct: 858 LIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPT 917
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+YR M R+ ++ + E E AGFK D
Sbjct: 918 MHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPD 952
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL H +G +P + Y +L+ S ++ +A + +++ C D Y ++K++
Sbjct: 1009 SLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIY 1068
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
S+A R FS +K+AG PT ++ + +SG+ + V + G L
Sbjct: 1069 RNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNL 1126
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAYRVVI 412
E LF +G +PT+ L+ S S + +EA V+ N+ E + L LP Y VI
Sbjct: 1077 AERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLP-YSSVI 1135
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
++ D + I+ ++K+ G P + I+ IR S R ++ + + AGF
Sbjct: 1136 DAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFD 1195
Query: 473 L 473
L
Sbjct: 1196 L 1196
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 122/311 (39%), Gaps = 33/311 (10%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR 233
I GL + VA+VLD + F V+ +G + RA + + W + P+ R
Sbjct: 165 ILGLKQDQFVADVLDDRKVQMTPTDFCFVVKSVGQESW-HRAFEVYEWLNLRHWYSPNAR 223
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG 293
+L++ + VL + ++ P +E F E + + VK N +
Sbjct: 224 MLSTILAVLGKANQ--EPLAVEVFTRA------EPSVENTVKVYNAMMG----------- 264
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
+YA+ +K + L+ E G DL A +K G +
Sbjct: 265 ------VYAR-----SGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAI 313
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
L SG P ++ Y TLI + EA+ V +M A +C DL Y +I
Sbjct: 314 --ELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMIS 371
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ +A + F+ L+ GF P Y + F G + K +D+C+E GF
Sbjct: 372 VYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGK 431
Query: 474 DKQTVVELLQI 484
D+ T ++ +
Sbjct: 432 DEMTYNTMIHM 442
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 350 KFGVVESLFHWFTHSGRDPTVV----MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G E+ H + D TV+ +Y +I + K ++A +V NM S +
Sbjct: 756 KMGFPETAHHLIDLTETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNR 815
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I+ + A RA F+ + + G PT D +++ + GRL + V +E
Sbjct: 816 KVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQE 875
Query: 466 AEMAGFKLDKQTVVELLQIEKESRIGTI 493
+ GFK+ K ++ LL ++ +R G I
Sbjct: 876 LQDIGFKISKSSI--LLMLDAFARAGNI 901
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
G+ + Y++V L D +G +S+ ++ R V+ ++H +G P
Sbjct: 864 GRLEELYVVVQELQD-IG----FKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFP 918
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
++ +Y + K+ R+ ++ ME + DL + V+K++VA++D + + +
Sbjct: 919 SMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIY 978
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++KE G P D Y +I ++ CRD
Sbjct: 979 QRIKEDGLEPDEDTYNILIVMY--------CRD 1003
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 51/119 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F+ G PTV L+ + + + + E VV ++ + +++ F
Sbjct: 836 AVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAF 895
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+I + + +K AG+ P+ +YR M ++ ++ + E E AGFK D
Sbjct: 896 ARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPD 954
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
+ LF G +PT+ L+ S S + +EA V+ N++ ++ Y VI
Sbjct: 1079 AQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVID 1138
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+V D + I+ ++KE G P + I+ IR
Sbjct: 1139 AYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIR 1173
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 126/315 (40%), Gaps = 33/315 (10%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
L I L S + VA VL++ + F V+ +G N +RAL+ + +
Sbjct: 154 LTDTILALKSEEFVAGVLEERRVQMTPTDFCFVVKWVGQQNW-QRALELYECLNLRHWYA 212
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVA 289
P+ R++A+ + VL + ++ +E F A A+ V G +++ ++ V
Sbjct: 213 PNARMVATILGVLGKANQ--EALAVEIF----------ARAESSV-GDTVQVYNAMMGVY 259
Query: 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ 349
GR K ++ L+ E G DL A MK G
Sbjct: 260 ARNGRF-----------------SKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEP 302
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+ L + SG P ++ Y TLI + E EA+ V +ME+ C DL Y
Sbjct: 303 NLAL--QLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYN 360
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
+I ++ +A F +L+ GF P Y ++ F G K RD+C+E
Sbjct: 361 AMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKR 420
Query: 470 GFKLDKQTVVELLQI 484
GF D+ T ++ +
Sbjct: 421 GFGQDEMTYNTIIHM 435
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 282 AWKLLMVAKDGGRMLDP--SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCT 339
A LL A+ G +LD S+Y ++ GK + +L+ L QR + ++
Sbjct: 756 AHHLLYHAEKNGIILDNDISVYIDIVETYGK-LKIWQKAESLVGSLRQRCS-KMDRKVWN 813
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A++ + ++F+ G PTV L+ + + +++ E V+ ++
Sbjct: 814 ALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDM 873
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
+ + ++ F ++ + ++ +K AG+ PT +YR M+R+ R+
Sbjct: 874 GLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDV 933
Query: 460 RDVCKEAEMAGFKLDKQTVVELLQI 484
+ E E AGF+ D Q +L++
Sbjct: 934 ETMLCEMEEAGFQPDLQICNSILKL 958
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 8/196 (4%)
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
SK + T + F + GNL K+ K G +Y +++L L + V T+
Sbjct: 878 SKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVY-RIMLRLLCKCKRVRDVETM 936
Query: 322 L---DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
L +E G + DL Q C +I+K+ + ++ F + ++ + P Y TLI
Sbjct: 937 LCEMEEAGFQPDL----QICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLII 992
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+++ E +++ M + L YR +I F +A F +L+ G+
Sbjct: 993 MYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKL 1052
Query: 439 TYDIYRDMIRIFMASG 454
Y M++ + SG
Sbjct: 1053 DRAFYHLMMKTYRTSG 1068
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 43/111 (38%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SGR+P V YT LI S K EA V+ M + L Y +I +
Sbjct: 455 SGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREE 514
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A F+ ++ +G P Y M+ F+ + K + E GF D
Sbjct: 515 AEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPD 565
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 43/307 (14%)
Query: 183 VAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242
V VL++ F V+ +G + +RAL+ + Q + R++A+ + VL
Sbjct: 182 VGHVLEEHRVLFTPTDFCFVVKSVGQSSW-QRALELYECLTMQQWYATNARMVATILSVL 240
Query: 243 ARHHE----LKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP 298
+ ++ +++ K E+ ++ + V A + + GN + ++ + ++ G D
Sbjct: 241 GKANQEGIAVEIFAKAESVIADTVQ-VYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDI 299
Query: 299 SIYAKLI-LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
+ LI ++ L + LLDE+G K G+R
Sbjct: 300 VSFNTLINAKVKSCATVSGLAIELLDEVG----------------KFGLR---------- 333
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
P ++ Y TLI + E +EA+ V +ME++ C DL Y +I ++
Sbjct: 334 ----------PDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGR 383
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+A F KLK GF P Y ++ F G K RD+ +E GF D+ T
Sbjct: 384 CGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMT 443
Query: 478 VVELLQI 484
++ +
Sbjct: 444 YNTIIHM 450
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F+ G PTV L+ + + + + E V+ ++ + + ++++ F
Sbjct: 845 AIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAF 904
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
++ + ++ +K AG+ PT +YR MI + R+ R + E AGFK D
Sbjct: 905 AQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDL 964
Query: 476 QTVVELLQ----IEKESRIGTI 493
Q +L+ IE+ +G I
Sbjct: 965 QIFNSVLKLYSSIEEFQNMGVI 986
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
G+NPD + L+D LG+ + + + + ++ G++ P
Sbjct: 471 GRNPDAVTYTV-LIDLLGKASKIEEASKVMSEMLDAGVK--------------------P 509
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
T+ Y+ LI + + EA M S D AY V++ F+ N+I +A +
Sbjct: 510 TLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALY 569
Query: 429 SKLKEAGFCPTYDIYRDMI 447
++ EAGF P +Y M+
Sbjct: 570 QEMIEAGFTPDTGLYEVML 588
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G+D + Y T+IH + EAL + +M++S D Y V+I L + I A
Sbjct: 438 GKDE--MTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEA 495
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+ S++ +AG PT Y +I + GR + + +G K D
Sbjct: 496 SKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKAD 545
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L+ SGR+P V YT LI K EA V+ M + L Y +I +
Sbjct: 463 LYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYA 522
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+ A F++++E+G + Y M+ F+ + K + +E AGF D
Sbjct: 523 KVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPD 580
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 8/220 (3%)
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
SK + + F + GNL K+ K G +Y +L++ L + V +
Sbjct: 893 SKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLY-RLMIGLLCRFKRVRDVRVM 951
Query: 322 LDELGQ---RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
L E+G+ + DL Q +++K+ +++F + ++ +G P Y TLI
Sbjct: 952 LSEMGEAGFKPDL----QIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLIT 1007
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ + E L+++ M++ YR +I F +A F +L+ G+
Sbjct: 1008 MYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKL 1067
Query: 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478
Y M++++ SG K ++ + + AG + + T+
Sbjct: 1068 DRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATM 1107
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 47/120 (39%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E+L +G +P L+ S + EA ++ N+ + D Y VI
Sbjct: 1088 AENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVID 1147
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ D I +++KEA P + I+ IR SG + ++ + GF L
Sbjct: 1148 AYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVGFDL 1207
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
G+ + Y+++ L D DL +S+ +++ + V+ +++ +G P
Sbjct: 873 GRLSELYVVIQELQDM-----DLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFP 927
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
T+ +Y +I K+ R+ ++ M + DL + V+KL+ ++ + +
Sbjct: 928 TMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIY 987
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
+++AG P + Y +I ++ CRD
Sbjct: 988 QMIQDAGLAPDEETYNTLITMY--------CRD 1012
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + + A++V+ M + + Y ++++ + A DI++
Sbjct: 586 SGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAK 645
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE G IY ++R SGR+ V + EM+ K+ + T V +
Sbjct: 646 AFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSSQKIARNTFVYNIL 703
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 704 IDGWARRGDV 713
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 341 IMKVGIRLQKFGVV------ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
I+ I + FG + ++LF + D ++Y+ +IH+ A +V
Sbjct: 347 IVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELVH 406
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
ME + AY ++ + + D + + F +LKE F P+ Y +I +++ G
Sbjct: 407 EMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIG 466
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVELL 482
++AK + KE E +G K + +T L+
Sbjct: 467 KVAKAIAISKEMESSGIKHNNKTYSMLI 494
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+++ Y LI+ + K +A+ + ME+S + Y ++I F+ L+D + A R
Sbjct: 450 PSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRI 509
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
F ++ ++G P IY +I F G +
Sbjct: 510 FEEMLKSGLQPDRAIYNLLIEAFCKMGNM 538
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+ AL ++ M S C + Y +I + N + RA+ +K+ AG P Y +
Sbjct: 574 KRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTII 633
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+R + A+G +AK + + + G KLD LL+
Sbjct: 634 MRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLR 670
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF G++K A +L + + G Y LI L + ++ +++L+++
Sbjct: 565 EGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRK-NQVERAVSVLNKMSIAG- 622
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT G V +Y TL+ + + +
Sbjct: 623 ITPNEHTYTIIMR---GYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQ 679
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + + Y ++I + D+ A ++KE G P Y I
Sbjct: 680 SALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYI 739
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + + V E G K + +T L++
Sbjct: 740 NACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIK 775
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 55/138 (39%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
I L F +F SG P +Y LI + A+ ++ M+
Sbjct: 498 IHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSN 557
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
A+R +I+ F D+ RA+ ++ +G PT Y +I + ++ + V +
Sbjct: 558 RAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNK 617
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T +++
Sbjct: 618 MSIAGITPNEHTYTIIMR 635
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + + A++V+ M + + Y ++++ + A DI +
Sbjct: 578 SGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGK 637
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE G IY ++R SGR+ V + EM+ K+ + T V +
Sbjct: 638 AFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSTQKIARNTFVYNIL 695
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 696 IDGWARRGDV 705
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
D ++Y+ +IH+ A +V ME + AY ++ + + D + +
Sbjct: 371 DLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLI 430
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
F +LKE F P+ Y +I +++ G++ K + KE E G K + +T L+
Sbjct: 431 VFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLI 486
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 56/138 (40%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
I L F S+F SG P +Y LI + A+ ++ M+
Sbjct: 490 IHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSN 549
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
A+R +I+ F D+ RA+ ++ +G PT Y +I + ++ + V +
Sbjct: 550 RAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNK 609
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T +++
Sbjct: 610 MSIAGITPNEHTYTIIMR 627
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF G++K A +L + + G Y LI L K ++ +++L+++
Sbjct: 557 EGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKK-NQVERAVSVLNKMSIAG- 614
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT G V +Y TL+ + + +
Sbjct: 615 ITPNEHTYTIIMR---GYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQ 671
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + Y ++I + D+ A ++KE G P Y I
Sbjct: 672 SALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYI 731
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + + V +E G K + +T L++
Sbjct: 732 NACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIK 767
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+++ Y LI+ + K +A+ + ME+ + Y ++I F+ L+D + A
Sbjct: 442 PSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSI 501
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
F ++ ++G P IY +I F G +
Sbjct: 502 FEEMLKSGLQPDRAIYNLLIEAFCKMGNM 530
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 12/220 (5%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-----LELGKNPDKYMLVMTLL 322
A G G L+ A +L D G ++P+++A I + G++ + + LL
Sbjct: 277 ALINGLCSEGRLEEAMDMLEEMIDKG--IEPTVHAYTIPIVSLCDAGRSCE----AVKLL 330
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
++ +R + Q TA++ R KF V ++H G PT V Y+ LI+
Sbjct: 331 GKMKKRG-CGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYV 389
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
E + ALT+ M + + L + Y V+IK F ++ I +A F ++ +AG P
Sbjct: 390 EGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVIT 449
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
Y +I I+ G + + + + G KLD T L+
Sbjct: 450 YNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLI 489
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SLF+ G P VV Y +I+ L+ K +AL + W M S + Y ++I F
Sbjct: 503 SLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGF 562
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
N IS A + K+ + G P Y I +GR
Sbjct: 563 SKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGR 602
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + K + A++V+ M + + Y ++++ + A DI +
Sbjct: 551 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 610
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE+G IY ++R SGR+ V + EM+ K+ + T + +
Sbjct: 611 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSFQKIPRNTFIYNIL 668
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 669 IDGWARRGDV 678
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
++Y+ +IH+ A +V ME + Y ++ + + + ++ + F +
Sbjct: 348 IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 407
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
LKE GF P+ Y ++ +++ G++AK + KE E G K + +T L+
Sbjct: 408 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLIN 460
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G P+++ Y L++ + K +AL++ ME+ + Y ++I F+
Sbjct: 404 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 463
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
L+D + A F ++ +G P IY +I F G + R +C
Sbjct: 464 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMD--RAIC 508
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+G+ G++K A L + + G + Y LI L + K +++LD++
Sbjct: 530 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRK-HKVQRAVSVLDKMSIAG- 587
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT SG V +Y TL+ + + +
Sbjct: 588 ITPNEHTYTIIMR---GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 644
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + Y ++I + D+ A ++KE G P Y I
Sbjct: 645 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 704
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + V +E G K + +T L++
Sbjct: 705 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 740
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+ + +I + AL + M S C+ + Y +I V + + RA+
Sbjct: 520 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 579
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
K+ AG P Y ++R + ASG + K + + + +G KLD LL+
Sbjct: 580 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 635
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + K + A++V+ M + + Y ++++ + A DI +
Sbjct: 577 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 636
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE+G IY ++R SGR+ V + EM+ K+ + T + +
Sbjct: 637 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSFQKIPRNTFIYNIL 694
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 695 IDGWARRGDV 704
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 41/160 (25%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI--- 421
G +P ++T+L+H+ + R AL+ V M++ + Y ++I F +ND
Sbjct: 327 GIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSHQS 386
Query: 422 --------------------------------------SRAIRYFSKLKEAGFCPTYDIY 443
++ + F +LKE GF P+ Y
Sbjct: 387 GNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 446
Query: 444 RDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++ +++ G++AK + KE E G K + +T L+
Sbjct: 447 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLIN 486
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G P+++ Y L++ + K +AL++ ME+ + Y ++I F+
Sbjct: 430 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 489
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
L+D + A F ++ +G P IY +I F G + R +C
Sbjct: 490 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMD--RAIC 534
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+G+ G++K A L + + G + Y LI L + K +++LD++
Sbjct: 556 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRK-HKVQRAVSVLDKMSIAG- 613
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT SG V +Y TL+ + + +
Sbjct: 614 ITPNEHTYTIIMR---GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 670
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + Y ++I + D+ A ++KE G P Y I
Sbjct: 671 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 730
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + V +E G K + +T L++
Sbjct: 731 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 766
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+ + +I + AL + M S C+ + Y +I V + + RA+
Sbjct: 546 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 605
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
K+ AG P Y ++R + ASG + K + + + +G KLD LL+
Sbjct: 606 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 661
>gi|358345906|ref|XP_003637015.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358347053|ref|XP_003637577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502950|gb|AES84153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503512|gb|AES84715.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 823
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
VV +F G T V + T+IH + + RE +++ ME CL D Y ++I
Sbjct: 290 VVYEIFARMIKQGVVLTTVTFNTMIHLYGNHGRIREVSSLLKRMEELRCLPDTRTYNILI 349
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ V N+I+ A +YF+K+KEA P YR ++ + + + ++ +E + G K
Sbjct: 350 SVLVKHNNINLATKYFAKMKEAFLEPDVVSYRTLLYAYSTRKMVQEAEEIVQEMDERGLK 409
Query: 473 LDKQTVVELLQIEKESRI 490
+D+ T L ++ ES +
Sbjct: 410 IDEFTQSALTRMYVESNM 427
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + K + A++V+ M + + Y ++++ + A DI +
Sbjct: 573 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 632
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE+G IY ++R SGR+ V + EM+ K+ + T + +
Sbjct: 633 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSFQKIPRNTFIYNIL 690
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 691 IDGWARRGDV 700
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
++Y+ +IH+ A +V ME + Y ++ + + + ++ + F +
Sbjct: 370 IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 429
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
LKE GF P+ Y ++ +++ G++AK + KE E G K + +T L+
Sbjct: 430 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLIN 482
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G P+++ Y L++ + K +AL++ ME+ + Y ++I F+
Sbjct: 426 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 485
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
L+D + A F ++ +G P IY +I F G + R +C
Sbjct: 486 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMD--RAIC 530
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+G+ G++K A L + + G + Y LI L + K +++LD++
Sbjct: 552 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRK-HKVQRAVSVLDKMSIAG- 609
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT SG V +Y TL+ + + +
Sbjct: 610 ITPNEHTYTIIMR---GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 666
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + Y ++I + D+ A ++KE G P Y I
Sbjct: 667 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 726
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + V +E G K + +T L++
Sbjct: 727 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 762
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+ + +I + AL + M S C+ + Y +I V + + RA+
Sbjct: 542 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 601
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
K+ AG P Y ++R + ASG + K + + + +G KLD LL+
Sbjct: 602 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 657
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + K + A++V+ M + + Y ++++ + A DI +
Sbjct: 572 SGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGK 631
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE+G IY ++R SGR+ V + EM+ K+ + T + +
Sbjct: 632 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSFQKIPRNTFIYNIL 689
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 690 IDGWARRGDV 699
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
++Y+ +IH+ A +V ME + Y ++ + + + ++ + F +
Sbjct: 369 IIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 428
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
LKE GF P+ Y ++ +++ G++AK + KE E G K + +T L+
Sbjct: 429 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLIN 481
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G P+++ Y L++ + K +AL++ ME+ + Y ++I F+
Sbjct: 425 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 484
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
L+D + A F ++ +G P IY +I F G + R +C
Sbjct: 485 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMD--RAIC 529
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+G+ G++K A L + + G + Y LI L + K +++LD++
Sbjct: 551 EGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRK-HKVQRAVSVLDKMSIAG- 608
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT SG V +Y TL+ + + +
Sbjct: 609 ITPNEHTYTIIMR---GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 665
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + Y ++I + D+ A ++KE G P Y I
Sbjct: 666 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYI 725
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + V +E G K + +T L++
Sbjct: 726 NACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 761
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+ + +I + AL + M S C+ + Y +I V + + RA+
Sbjct: 541 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 600
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
K+ AG P Y ++R + ASG + K + + + +G KLD LL+
Sbjct: 601 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 656
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/386 (20%), Positives = 159/386 (41%), Gaps = 31/386 (8%)
Query: 125 RPLPLPLPHRLRPLELPTPKKRVCLAS-SRASICKQVYKNPSFLI----------SLARD 173
+P LP P+R R + L +K A+ +RA + V NPS ++ +L
Sbjct: 25 KPNLLPYPNR-RLISLSGDRKTYSGAAKARAKTKELVLGNPSVVVEKGKYSYDVETLINK 83
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR 233
+ L +A L+ L + +E +R+L+ F + Q+Q P++
Sbjct: 84 LSSLPPRGSIARCLEIFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEH 143
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAWKLLM 287
+ + +L R L+ ++ F + + GV A + + G +++ +LL
Sbjct: 144 IYTIIISLLGREGLLEKSTEI--FEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLE 201
Query: 288 VAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQQDCTAIM 342
K + PSI Y +I + + +++L E+ G + D+ A
Sbjct: 202 RMKK--EKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACA 259
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
G+ + E +F G P + Y L+ + K + ++ ME+S L
Sbjct: 260 NRGLGDE----AEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNL 315
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ +Y V+++ + + DI A+ F +++EA P Y ++ ++ GR R++
Sbjct: 316 PDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVREL 375
Query: 463 CKEAEMAGFKLDKQTVVELLQIEKES 488
E +++ + D T L+++ E
Sbjct: 376 FLEMKVSNTEPDVGTYNVLIEVFGEG 401
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 52/114 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G PTV Y +LI+ +E+ ++W M S D ++ VI+ +
Sbjct: 480 MFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYR 539
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
AI+ + +L++A F P + ++ ++ +G + + + +E +G
Sbjct: 540 QGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASG 593
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + + +A++V+ M + + Y ++++ + A DI +
Sbjct: 560 SGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 619
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE+G IY ++R SGR+ V + EM+ K+ + T + +
Sbjct: 620 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSFQKIPRNTFIYNIL 677
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 678 IDGWARRGDV 687
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
++Y+ +IH+ A +V ME + Y ++ + + D + + F +
Sbjct: 357 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFER 416
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
LKE GF PT Y +I +++ G++ K + KE E G K + +T L+
Sbjct: 417 LKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLIN 469
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PT++ Y LI+ + K +A+ + ME+ + Y ++I F+
Sbjct: 413 VFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFI 472
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
L+D + A F + ++G P IY ++ F G +
Sbjct: 473 HLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNM 512
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF G++K A+ L + + G Y LI L + + +++LD++
Sbjct: 539 EGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRK-HQVEKAVSVLDKMSIAG- 596
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT SG V +Y TL+ + + +
Sbjct: 597 IAPNEHTYTIIMR---GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 653
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + Y ++I + D+ A ++KE G P + I
Sbjct: 654 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYI 713
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + +V +E G K + +T L++
Sbjct: 714 NACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIK 749
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 53/138 (38%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
I L F S+F SG P +Y L+ + A+ + M+
Sbjct: 472 IHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSN 531
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+R +I+ F D+ RA ++ +G PT Y +I + ++ K V +
Sbjct: 532 RTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDK 591
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T +++
Sbjct: 592 MSIAGIAPNEHTYTIIMR 609
>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g39230, mitochondrial; AltName: Full=Protein LATERAL
ORGAN JUNCTION; Flags: Precursor
gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
Length = 867
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
GF K + + AW ++ + IY +I ++G+ ++ L+ E +R
Sbjct: 528 GFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKE--KR 585
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKK 385
++ CT+ + K G +S + + +G+ P VV +T+LI+ +
Sbjct: 586 YSMS-----CTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNR 640
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
AL + M++ DLPAY +I F ND+ A FS+L E G P +Y
Sbjct: 641 MDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNS 700
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I F G++ D+ K+ G D T ++
Sbjct: 701 LISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMI 737
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 16/267 (5%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
S+ ++ G NLP++AL TF + Q ++ P + L +++L H P + F
Sbjct: 114 FSYLIKIYGEANLPDKALNTF-YIMLQFNIKPLTKHLNRILDILVSHRNYLRP-AFDLFK 171
Query: 259 SLASKGVLEAT------AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP 312
GV T + F G++ +A+ L + D Y L+ L +
Sbjct: 172 DAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKS 231
Query: 313 DKYMLVMTLLDELGQR---DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
V D L + D T ++ R +K L G +P
Sbjct: 232 QVNGAVDLFEDMLNKGFVPDSFTY-----TTLLNSLCRKKKLREAYKLLCRMKVKGCNPD 286
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+V Y T+I E + +A V+ +M+A+ CL +L +YR ++ L + A +Y
Sbjct: 287 IVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVE 346
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ GF P + + +++ F GR+
Sbjct: 347 EMLSKGFSPHFAVIHALVKGFCNVGRI 373
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE--LGKNPDKYMLVMTLLDELGQRD 329
G K G + +A +L + + G + +Y LI + KN ++ + ++ + G
Sbjct: 383 GLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMEL 442
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D++L + KV QK +SL H G P V+YTT++ + K EA
Sbjct: 443 DVSLYGTLIWGLCKV----QKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEA 498
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ ++ + S ++ Y +I I AI +F K++E G P +Y +I
Sbjct: 499 VALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDG 558
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
F G L+K + E G LDK L+
Sbjct: 559 FCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLI 591
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 6/205 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
G N + A LL K+ G LD S+Y LI L K D+ ++ +D+ G R
Sbjct: 418 GHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRP 477
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + T IM + K +L H SG P VV Y LI EA
Sbjct: 478 NTVIY----TTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEA 533
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
++ M ++ Y +I F + +S+A+ +++ + G +Y +I
Sbjct: 534 ISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDG 593
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLD 474
M G L + + G +LD
Sbjct: 594 HMKQGDLQGAFALKAKMIETGLQLD 618
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G P VV Y +LI + E +V M S C D+ Y +I F
Sbjct: 220 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCF 279
Query: 416 VALNDISRAIRYFSKLKEAG 435
I +A YF ++K G
Sbjct: 280 SKFGWIEKAYSYFGEMKRLG 299
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTV+ Y LIH + + + A++V+ M + + Y ++++ + A DI +
Sbjct: 562 SGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGK 621
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A YF+K+KE+G IY ++R SGR+ V + EM+ K+ + T + +
Sbjct: 622 AFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR--EMSFQKIPRNTFIYNIL 679
Query: 484 IEKESRIGTI 493
I+ +R G +
Sbjct: 680 IDGWARRGDV 689
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
++Y+ +IH+ A +V ME + Y ++ + D + + F +
Sbjct: 359 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFER 418
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
LKE GF P+ Y +I +++ G++ K V KE E G K + +T L+
Sbjct: 419 LKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLIN 471
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G P+++ Y LI+ + K +AL V ME+ + Y ++I F+
Sbjct: 415 VFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFI 474
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
L+D + A F + ++G P IY ++ F G +
Sbjct: 475 HLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNM 514
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF G++K A L + + G Y LI L + + +++LD++
Sbjct: 541 EGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRK-HQVERAVSVLDKMSIAG- 598
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCR 387
+ ++ T IM+ G + F +FT SG V +Y TL+ + + +
Sbjct: 599 IAPNEHTYTIIMR---GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 655
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL V M + Y ++I + D+ A ++KE G P + I
Sbjct: 656 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYI 715
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + +V +E G K + +T L++
Sbjct: 716 NACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIK 751
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 133/322 (41%), Gaps = 15/322 (4%)
Query: 168 ISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWA-QKQP 226
I A D KG+DS +L+ R +F +RELG+ +A++ F +A +++
Sbjct: 125 IRFASDDKGIDS-----VLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVRREQ 179
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGGNLK 280
+L ++ + +L R ++++ + F + ++G A + + G
Sbjct: 180 RRNEQGKLASAMISILGRLGQVELAKNV--FETALNEGYGNTVYAFSALISAYGRSGYCD 237
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340
A K+ K G + Y +I GK + + DE+ R+ + + +
Sbjct: 238 EAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEM-LRNGVQPDRITFNS 296
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
++ V R + +LF + G + + Y TL+ + + A ++ M +
Sbjct: 297 LLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKH 356
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
+ ++ Y VI + + A+ F+++K A Y ++ I+ GR +
Sbjct: 357 IMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEAL 416
Query: 461 DVCKEAEMAGFKLDKQTVVELL 482
+VCKE E +G K D T LL
Sbjct: 417 NVCKEMESSGIKKDAVTYNALL 438
>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 680
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D + + ++ L + + + LLD + + S +++ +R ++FG+
Sbjct: 119 DRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFGIAHG 178
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF P Y+TLI S E AL+ + ME DL Y +I+L
Sbjct: 179 LFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSR 238
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
L D S+AI FS+LK +G P Y MI ++ + + R + KE AG +
Sbjct: 239 RLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTV 298
Query: 477 TVVELLQIEKES 488
+ LL + E+
Sbjct: 299 SYSTLLSVYVEN 310
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 6/260 (2%)
Query: 195 RKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL 254
R+ S+ F V L N +R+L W ++ P + + R + + L
Sbjct: 120 RQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFGIAHGL 179
Query: 255 ENFV---SLASKGVLEAT-AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
+ + +LA +T F K G A L + D +Y+ LI EL +
Sbjct: 180 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLI-ELSR 238
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
Y +++ L +R + +++ V + + F L +G P
Sbjct: 239 RLCDYSKAISIFSRL-KRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNT 297
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V Y+TL+ + K EAL+V M+ NC DL ++I ++ L+ + A R F
Sbjct: 298 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWS 357
Query: 431 LKEAGFCPTYDIYRDMIRIF 450
L++ P Y ++R++
Sbjct: 358 LRKMDIEPNVVSYNTILRVY 377
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 2/211 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G+ K ++ A LL + G P+ Y LI LGK +Y L EL + +
Sbjct: 418 GYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK-AKRYEAANELFKEL-KENFG 475
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
N+S + ++K + K LF+ + G P V Y L+ + EA +
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANS 535
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ ME + C D+ ++ +++ F RAI F +K G P Y ++ F
Sbjct: 536 LLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFA 595
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+G + + +E + GF+ D T +L
Sbjct: 596 HAGMFEEAARLMREMKDKGFEYDAITYSSIL 626
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 2/211 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G+ K ++ A LL + G P+ Y LI LGK +Y L EL + +
Sbjct: 418 GYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK-AKRYEAANELFKEL-KENFG 475
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
N+S + ++K + K LF+ + G P V Y L+ + EA +
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANS 535
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ ME + C D+ ++ +++ F RAI F +K +G P Y ++ F
Sbjct: 536 LLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+G + + +E + GF+ D T +L
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSIL 626
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 6/196 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G+ + G ++ A+ LL K + + + LI K D+ M + T + G
Sbjct: 290 GYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEA 349
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D+ + K G + + +++ + G DP+ + Y ++ + +++ E
Sbjct: 350 DVVTYTTLISGFCKWGNTDKAYEILDDMIQ----KGHDPSQLSYLCIMMAHEKKEELEEC 405
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ ++ M C+ DL Y +I+L L D+ A+R + +++ G P D Y M+
Sbjct: 406 MELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHG 465
Query: 450 FMASGRLAKCRDVCKE 465
F++ G L + D KE
Sbjct: 466 FLSQGCLVEACDYFKE 481
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 121/301 (40%), Gaps = 29/301 (9%)
Query: 187 LDKCGRFLRKG-----SLSFTVRELGHM---NLPERAL-----------QTFCWAQKQPH 227
++K R LRK L ++E G + LPER L + F WA KQP
Sbjct: 77 VEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPG 136
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKL------ENFVSLASKGVLEATAKGFVKGGNLKL 281
+ + ++ L + + + L EN L + V + F +K
Sbjct: 137 YRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPE-VFIVLMRRFASVRMVKK 195
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
A ++L G D ++ L+ L KN +L +++ R + NL + T++
Sbjct: 196 AVEVLDEMPKYGCEPDEYVFGCLLDALCKN-GSVKEAASLFEDMRVRFNPNL--RHFTSL 252
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ R K + + +G +P +V+Y L+ K R+A ++ M+ NC
Sbjct: 253 LYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNC 312
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
+ ++ ++I+ F + A+R F++++ +G Y +I F G K +
Sbjct: 313 GPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYE 372
Query: 462 V 462
+
Sbjct: 373 I 373
>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 867
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 13/217 (5%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
GF K + + AW+++ + IY +I ++G+ ++ L+ E +R
Sbjct: 528 GFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKE--KR 585
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKK 385
+ CT+ + K G +S + + +G P VV +T+LI+ +
Sbjct: 586 YSMG-----CTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNR 640
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
AL ++ M++ + D+PAY +I F ND+ A FS+L E G P +Y +
Sbjct: 641 MDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNN 700
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I F G++ D+ K+ G D T ++
Sbjct: 701 LISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMI 737
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 154/378 (40%), Gaps = 53/378 (14%)
Query: 151 SSRASICKQVYKNPSF--LISLARDIKGLDSHKD-VAEVLDKC-GRFLRKGSLSFTVREL 206
SSRASI ++ + + L++ A+ + +KD V VL K G+ L + ++ L
Sbjct: 95 SSRASILRKSSYDAKYTSLVNAAKYLNSCSPNKDDVFNVLSKFDGKLLEQDAVVI----L 150
Query: 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL-----------E 255
+M+ P+ AL + Q++ + + T++V + +L KL +
Sbjct: 151 NNMSNPDTALLALKFFQERLKFNREVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPD 210
Query: 256 NFV-----------SLASKGV-----------------LEATAKGFVKGGNLKLAWKLLM 287
NF +LA K V L + + GN++ A L
Sbjct: 211 NFTFSTIISCARLCNLADKAVEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYD 270
Query: 288 VAKDGGRMLDPSIYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345
A+ G LD + ++ LI ++ N D + V + LG + +L + ++
Sbjct: 271 RARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYN----ILLDAM 326
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
R ++ V+ + +G P+ V Y L+H+ + +A + M+ ++
Sbjct: 327 GRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNV 386
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + L + +A+ F +K +G P + MI IF G++++ + E
Sbjct: 387 VLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNE 446
Query: 466 AEMAGFKLDKQTVVELLQ 483
AGF+ + + L+Q
Sbjct: 447 MFEAGFQPNIFILTSLIQ 464
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 6/196 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G+ + G ++ A+ LL K + + + LI K D+ M + T + G
Sbjct: 313 GYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEA 372
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D+ + K G + + +++ + G DP+ + Y ++ + +++ E
Sbjct: 373 DVVTYTTLISGFCKWGNTDKAYEILDDMIQ----KGHDPSQLSYLCIMMAHEKKEELEEC 428
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ ++ M C+ DL Y +I+L L D+ A+R + +++ G P D Y M+
Sbjct: 429 MELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHG 488
Query: 450 FMASGRLAKCRDVCKE 465
F++ G L + D KE
Sbjct: 489 FLSQGCLVEACDYFKE 504
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 121/301 (40%), Gaps = 29/301 (9%)
Query: 187 LDKCGRFLRKG-----SLSFTVRELGHM---NLPERAL-----------QTFCWAQKQPH 227
++K R LRK L ++E G + LPER L + F WA KQP
Sbjct: 100 VEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPG 159
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKL------ENFVSLASKGVLEATAKGFVKGGNLKL 281
+ + ++ L + + + L EN L + V + F +K
Sbjct: 160 YRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPE-VFIVLMRRFASVRMVKK 218
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
A ++L G D ++ L+ L KN +L +++ R + NL + T++
Sbjct: 219 AVEVLDEMPKYGCEPDEYVFGCLLDALCKN-GSVKEAASLFEDMRVRFNPNL--RHFTSL 275
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ R K + + +G +P +V+Y L+ K R+A ++ M+ NC
Sbjct: 276 LYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNC 335
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
+ ++ ++I+ F + A+R F++++ +G Y +I F G K +
Sbjct: 336 GPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYE 395
Query: 462 V 462
+
Sbjct: 396 I 396
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 2/211 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G+ K ++ A LL + G P+ Y LI LGK +Y L EL + +
Sbjct: 418 GYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK-AKRYEAADELFKEL-KENFG 475
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
N+S + ++K + K LF+ + G P V Y L+ + EA +
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANS 535
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ ME + C D+ ++ +++ F RAI F +K +G P Y ++ F
Sbjct: 536 LLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+G + + +E + GF+ D T +L
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSIL 626
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/393 (20%), Positives = 148/393 (37%), Gaps = 39/393 (9%)
Query: 127 LPLPLPHRLRPLEL----------PTPKKRVCLASSRASICKQVYKNPSFLI-------- 168
+P P P L P P+P++R+ L + + NPS +
Sbjct: 11 VPHPSPFSLTPTTTLRQLFFTNFTPSPRRRLQLQARAGKPNVLIPINPSVAVEKGKYSYD 70
Query: 169 --SLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQP 226
+L I L +A LD L + +E +R+L+ F + Q+Q
Sbjct: 71 VETLINRITALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQI 130
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLK 280
P++ + + +L R L E F + S GV A + + G
Sbjct: 131 WCKPNEHIYTIMITLLGREGLLDKC--REVFDEMPSNGVARTVYVYTAVINAYGRNGQFH 188
Query: 281 LAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQ 335
+ +LL K + PSI Y +I + + ++ L E+ G + D+
Sbjct: 189 ASLELLNGMKQ--ERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYN 246
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
A G+ + E +F SG P + Y+ L+ + + + ++
Sbjct: 247 TLLGACAHRGLGDE----AEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLRE 302
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
ME+ L D+ +Y V+++ + L I A+ F +++ AG Y ++ ++ GR
Sbjct: 303 MESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGR 362
Query: 456 LAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
RD+ E +++ D T L+Q+ E
Sbjct: 363 YDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEG 395
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 14/177 (7%)
Query: 311 NPDKYMLVMTLLDELGQRDD-------LNLSQQDCTAIMKVGIRLQKFGV------VESL 357
N Y +++ L + G+ DD + +S D A I +Q FG V +L
Sbjct: 346 NAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDA-GTYNILIQVFGEGGYFKEVVTL 404
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
FH +P + Y LI + +A ++ +M + AY VI+ F
Sbjct: 405 FHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQ 464
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A+ F+ + E G PT + Y I F G + + +G K D
Sbjct: 465 AALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRD 521
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 24/268 (8%)
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGGNLKLA 282
+P+ S + R+H L + F + F + G G G L+ A
Sbjct: 234 YPNAFTYTSLILGHCRNHNLDLAFAM--FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEA 291
Query: 283 WKLL--MVAKDGGRMLDPSIYAKLI-----LELGKNPDKYMLVMTLLDELGQRDDLNLSQ 335
+L MV K ++P++Y I + G + + + LL ++ +R + +
Sbjct: 292 MDMLEEMVQKG----IEPTVYTYTIPLVSLCDAGCSSE----AVELLGKMKKRGCVP-NI 342
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q TA++ R KF + L+H G PT V Y LI+ E + A T+
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKW 402
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
M + L Y +IK F + DI +A+ F K+ +AG P Y +I + G
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462
Query: 456 LAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
L + + + G K D T EL+
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELIS 490
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 67/196 (34%), Gaps = 37/196 (18%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G+ K GNL A +LL + K G D Y +LI +
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR--------------------- 494
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
G +L+ SLF+ G P V YT +I + K +AL
Sbjct: 495 -------------GGKLEH---ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALA 538
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ W M S L Y V+I F N IS A + K+ + G P Y I
Sbjct: 539 LFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLC 598
Query: 452 ASGRLAKCRDVCKEAE 467
+GR + E E
Sbjct: 599 RNGRTGLAFKIFHEME 614
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 258 VSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKY 315
+SL + +L GF K GN + A AK+ L+ IY +I + N DK
Sbjct: 379 MSLVTYSIL---VSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKA 435
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
++ ++E G +++ VG + V F F G +P+V+ Y
Sbjct: 436 EALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLV----FERFKECGLNPSVITYGC 491
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
LI+ K +AL V ME + ++ Y ++I F+ L D + A F L + G
Sbjct: 492 LINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDG 551
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
P +Y ++I F G++ R VC EM
Sbjct: 552 IKPDVVLYNNIITAFCGMGKMD--RAVCTVKEM 582
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 348 LQKFGVVESLFHWFTHSGRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
K G ES HWF + + ++Y +I++ +A +V ME
Sbjct: 391 FAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAP 450
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ Y ++ + + D + + F + KE G P+ Y +I ++ G+++K +V K
Sbjct: 451 IDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSK 510
Query: 465 EAEMAGFKLDKQTVVELLQ 483
E E AG K + +T L+
Sbjct: 511 EMEHAGIKHNMKTYSMLIN 529
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV Y LI + ++K +A ++ M + + Y ++ +
Sbjct: 613 VFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYA 672
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+L D +A YF+KL++ G Y +++ SGR+ V K EM+ + +
Sbjct: 673 SLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK--EMSAQNIPRN 730
Query: 477 TVVELLQIEKESRIGTI 493
T + + I+ +R G I
Sbjct: 731 TFIYNILIDGWARRGDI 747
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P+ +YT LIH+ + EAL+ V M+ L Y +++ F + A
Sbjct: 341 GIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESA 400
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+F + KE IY ++I + + K + +E E G
Sbjct: 401 DHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGI 447
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 10/193 (5%)
Query: 296 LDPSI--YAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK 350
L+PS+ Y LI +LGK K + V ++ G + ++ +K+
Sbjct: 482 LNPSVITYGCLINLYAKLGK-VSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANA 540
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
F + E L G P VV+Y +I + K A+ V M+ +
Sbjct: 541 FAIFEDLIK----DGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMP 596
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I F ++ +A+ F ++ +G PT Y +I + ++ K + E +AG
Sbjct: 597 IIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAG 656
Query: 471 FKLDKQTVVELLQ 483
++ T ++
Sbjct: 657 VSPNEHTYTTIMH 669
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 24/268 (8%)
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGGNLKLA 282
+P+ S + R+H L + F + F + G G G L+ A
Sbjct: 234 YPNAFTYTSLILGHCRNHNLDLAFAM--FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEA 291
Query: 283 WKLL--MVAKDGGRMLDPSIYAKLI-----LELGKNPDKYMLVMTLLDELGQRDDLNLSQ 335
+L MV K ++P++Y I + G + + + LL ++ +R + +
Sbjct: 292 MDMLEEMVQKG----IEPTVYTYTIPLVSLCDAGCSSE----AVELLGKMKKRGCVP-NI 342
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q TA++ R KF + L+H G PT V Y LI+ E + A T+
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKW 402
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
M + L Y +IK F + DI +A+ F K+ +AG P Y +I + G
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462
Query: 456 LAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
L + + + G K D T EL+
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELIS 490
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 67/196 (34%), Gaps = 37/196 (18%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G+ K GNL A +LL + K G D Y +LI +
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR--------------------- 494
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
G +L+ SLF+ G P V YT +I + K +AL
Sbjct: 495 -------------GGKLEH---ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALA 538
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ W M S L Y V+I F N IS A + K+ + G P Y I
Sbjct: 539 LFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLC 598
Query: 452 ASGRLAKCRDVCKEAE 467
+GR + E E
Sbjct: 599 RNGRTGLAFKIFHEME 614
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL---ELGKNPDKYMLVMTLLDELGQ 327
KG+ GN A ++L + +DGG D Y +LI ++ K + L ++D
Sbjct: 468 KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---- 523
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D L ++ TA++ + +K SL SG P V Y LIH +
Sbjct: 524 -DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 582
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
A + M ++ Y +I S A+ F+K+ E G P Y +I
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
R G++ + ++ E E G D+ T V++++
Sbjct: 643 RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 2/185 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A+ L D G + Y LI G D+ + T L E +R
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID--GYCKDEKLDTATSLLEHMKRSGC 561
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ Q ++ + F E L G P VV YT +I AL
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ M CL +L Y +I+ + A F++L+ G P Y MI ++
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681
Query: 452 ASGRL 456
SG++
Sbjct: 682 MSGKV 686
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G P ++ Y++LI + E K EA + +E + D Y +I+ ++
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR-----IFMASGRLAKCRDVCKEAEMAGF 471
+ A + ++ +AG PT Y +I+ +A RLA DV G+
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF-GY 740
Query: 472 KLDKQTVVELLQ 483
+ Q V ++
Sbjct: 741 QTTDQDAVSVMS 752
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL---ELGKNPDKYMLVMTLLDELGQ 327
KG+ GN A ++L + +DGG D Y +LI ++ K + L ++D
Sbjct: 468 KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---- 523
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D L ++ TA++ + +K SL SG P V Y LIH +
Sbjct: 524 -DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 582
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
A + M ++ Y +I S A+ F+K+ E G P Y +I
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
R G++ + ++ E E G D+ T V++++
Sbjct: 643 RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 2/185 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A+ L D G + Y LI G D+ + T L E +R
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID--GYCKDEKLDTATSLLEHMKRSGC 561
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ Q ++ + F E L G P VV YT +I AL
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ M CL +L Y +I+ + A F++L+ G P Y MI ++
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681
Query: 452 ASGRL 456
SG++
Sbjct: 682 MSGKV 686
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G P ++ Y++LI + E K EA + +E + D Y +I+ ++
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR-----IFMASGRLAKCRDVCKEAEMAGF 471
+ A + ++ +AG PT Y +I+ +A RLA DV G+
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF-GY 740
Query: 472 KLDKQTVVELLQ 483
+ Q V ++
Sbjct: 741 QTTDQDAVSVMS 752
>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
Length = 621
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 134/327 (40%), Gaps = 36/327 (11%)
Query: 181 KDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE 240
+++ VLD+CG L + + P A + FCWA ++P D + + +
Sbjct: 160 RNMEAVLDECGVKLSHDLVLEVLARFKQARKP--AFRFFCWAAQKPGFAHDSKTYNTMMT 217
Query: 241 VLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI 300
+L + + E VSL + E K + + +K AK+ + +
Sbjct: 218 ILGKTRQ------FETMVSL----LEEMAEKELLTMETFTVCFKAFAAAKERKKAVG--- 264
Query: 301 YAKLILELGKNPDKYMLVMT---LLDELGQ----RDDLNLSQ----------QDCTAIMK 343
+LEL K + V T LLD LG+ ++ L + + Q T ++
Sbjct: 265 ----VLELMKKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLN 320
Query: 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
R++ +++ P +V + T++ L KK +A+ + M+A
Sbjct: 321 GWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSP 380
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
D+ +Y ++++ F + A++YF +++ AG P IY +I F R+ +
Sbjct: 381 DVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLL 440
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESRI 490
KE + G D +T L+++ R+
Sbjct: 441 KEMKANGCPPDGKTYNALIKLMTNKRM 467
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F +G P +YT LI ++K+ ++ M+A+ C D Y +IKL
Sbjct: 405 FEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTN 464
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
A+R + K+ E G PT Y M++ + +
Sbjct: 465 KRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQT 500
>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
[Vitis vinifera]
Length = 881
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 90/234 (38%), Gaps = 34/234 (14%)
Query: 264 GVLEATAKGFVKGGNLKLA------WKLLMVAKDGGRMLDPSIYAKLILELGKNPD---K 314
GV+ T K K G K A W L KD G+ +P+ A +E P
Sbjct: 270 GVVVQTYK---KAGEFKKAEQFFKNWSLGKTLKDEGKTSEPT--ATSAVESASQPHVCLS 324
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
TL+D G+ L + F W G P V +
Sbjct: 325 SYTYNTLIDTYGKAGQLREASD--------------------TFAWMLREGIIPNTVTFN 364
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
T+IH + + EA +++ ME C D Y ++I L N+I RA YF K+KEA
Sbjct: 365 TMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEA 424
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
P YR ++ F + + + E + G ++D+ T L ++ E+
Sbjct: 425 RLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEA 478
>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
Length = 862
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F W G P V + T+IH + + EA +++ ME C D Y ++I L
Sbjct: 329 FAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAK 388
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
N+I RA YF K+KEA P YR ++ F + + + E + G ++D+ T
Sbjct: 389 HNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFT 448
Query: 478 VVELLQIEKES 488
L ++ E+
Sbjct: 449 QSALTRMYIEA 459
>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Glycine max]
Length = 648
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 24/322 (7%)
Query: 173 DIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDD 232
++ LD + +V VLD+CG L + ++ H P A + FCWA K+P D
Sbjct: 183 ELFALDRNMEV--VLDECGVRLSHDLVVDVLQRFKHARKP--AFRFFCWAGKRPGFAHDS 238
Query: 233 RLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDG 292
R + VL R + E V++ E KG + +A K AK
Sbjct: 239 RTYNFMMCVLGRTRQ------FETMVAMLE----EMGEKGLLTMETFSIAIKAFAEAKQR 288
Query: 293 GRMLDP-SIYAKLILELGKNPDKYMLVMTLLDELGQ---------RDDLNLSQQDCTAIM 342
+ + + K ++G + ++L +LG+ +D S Q T ++
Sbjct: 289 KKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILL 348
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
RL+ +++ G +P VV + ++ L KK +A+ + M+A
Sbjct: 349 SGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPS 408
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
++ +Y ++I+ F + AI YF + + G P +Y +I F ++ +
Sbjct: 409 PNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSL 468
Query: 463 CKEAEMAGFKLDKQTVVELLQI 484
KE G D +T L+++
Sbjct: 469 LKEMRERGCPPDGRTYNALIKL 490
>gi|357487221|ref|XP_003613898.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515233|gb|AES96856.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 807
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 350 KFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G +++++ F G PT V + T+IH + + RE ++ ME C D
Sbjct: 283 KAGQIQAVYEIFAKMIKQGVAPTTVTFNTMIHLYGNHGRIREVSLLLQRMEELRCPPDTR 342
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y ++I + V N+I A +Y K+KEA P YR ++ + + + ++ +E
Sbjct: 343 TYNILISVLVKHNNIKLAAKYLMKMKEAFLEPDLVSYRTLLYAYSTRKMVQEAEELVREM 402
Query: 467 EMAGFKLDKQTVVELLQIEKESRI 490
+ G K+D+ T L ++ ES +
Sbjct: 403 DERGLKIDEFTQAALTRMYVESNM 426
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL---ELGKNPDKYMLVMTLLDELGQ 327
KG+ GN A ++L + +DGG D Y +LI ++ K + L ++D
Sbjct: 638 KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---- 693
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D L ++ TA++ + +K SL SG P V Y LIH +
Sbjct: 694 -DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 752
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
A + M ++ Y +I S A+ F+K+ E G P Y +I
Sbjct: 753 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 812
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
R G++ + ++ E E G D+ T V++++
Sbjct: 813 RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 848
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 2/185 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A+ L D G + Y LI G D+ + T L E +R
Sbjct: 674 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID--GYCKDEKLDTATSLLEHMKRSGC 731
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ Q ++ + F E L G P VV YT +I AL
Sbjct: 732 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ M CL +L Y +I+ + A F++L+ G P Y MI ++
Sbjct: 792 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 851
Query: 452 ASGRL 456
SG++
Sbjct: 852 MSGKV 856
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G P ++ Y++LI + E K EA + +E + D Y +I+ ++
Sbjct: 792 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 851
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR-----IFMASGRLAKCRDVCKEAEMAGF 471
+ A + ++ +AG PT Y +I+ +A RLA DV G+
Sbjct: 852 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF-GY 910
Query: 472 KLDKQTVVELLQ 483
+ Q V ++
Sbjct: 911 QTTDQDAVSVMS 922
>gi|218192142|gb|EEC74569.1| hypothetical protein OsI_10130 [Oryza sativa Indica Group]
Length = 823
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 275 KGGNLKLA--WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
KGG ++A W M+ + +L I ++L++ K +Y D+
Sbjct: 188 KGGRERMALLWLGDMIKRG---LLPDEITMSIVLQVHKKAGEYEKAELFFKRWSLESDVK 244
Query: 333 LSQQDCTAIMKVGIRLQKFGV------VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ C ++ + +G V F+ G P VV + T+IH ++
Sbjct: 245 MKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFNTMIHVWGKHRRM 304
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+ +++ ME CL D Y ++I L+ +NDI A YF K+K P R +
Sbjct: 305 EQVASLMRTMEEFQCLPDTRTYNILISLYREINDIDVAEYYFRKMKAENLLPDVVSCRTL 364
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ + G + + + + KE +D+ T
Sbjct: 365 LYGYSIKGMVTEAQALLKEMYERNMVIDEYT 395
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 49/192 (25%)
Query: 322 LDELGQRDDLNLSQQDCTAIMK--------VGIRLQKFGVVESL------FHWFTHSGRD 367
+D G+R + L+++ +K + ++ +G+VE L G
Sbjct: 432 IDAFGERGHILLAEKAFMCCIKRKMLSTCVCNVMIKAYGLVEKLDEACEIADGMERYGIL 491
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-------------------------NCL 402
P + Y++LIH + K +AL + M+A+ +CL
Sbjct: 492 PDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLLIDCVPYSVVISCFAKNGNLHMVDCL 551
Query: 403 F----------DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
F D Y ++I + + D+ +A YF LK+AG C + IY +I+++
Sbjct: 552 FREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAGLCESATIYNSLIKLYTK 611
Query: 453 SGRLAKCRDVCK 464
LA+ + + K
Sbjct: 612 VVYLAEAQKMYK 623
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 117/290 (40%), Gaps = 10/290 (3%)
Query: 200 SFTVRELGHMNLPERALQTFCWA-QKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
+F +RELG+ +A++ F +A +++ +L ++ + L R KV F
Sbjct: 157 TFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLG--KVELAKAVFD 214
Query: 259 SLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP 312
+ +G A + + G A K+ K G M + Y +I GK
Sbjct: 215 TALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGG 274
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
++ V+ + D + + + + +++ V R + LF G D +
Sbjct: 275 VEFKKVVEIFDGM-LSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFT 333
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y TL+ + + A ++ M N L ++ Y +I + + + A+ F+++K
Sbjct: 334 YNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMK 393
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
G Y ++ ++ GR + DVCKE E AG + D T LL
Sbjct: 394 FLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALL 443
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL---ELGKNPDKYMLVMTLLDELGQ 327
KG+ GN A ++L + +DGG D Y +LI ++ K + L ++D
Sbjct: 468 KGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---- 523
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D L ++ TA++ + +K SL SG P V Y LIH +
Sbjct: 524 -DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 582
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
A + M ++ Y +I S A+ F+K+ E G P Y +I
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
R G++ + ++ E E G D+ T V++++
Sbjct: 643 RALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 2/185 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A+ L D G + Y LI G D+ + T L E +R
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID--GYCKDEKLDTATSLLEHMKRSGC 561
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ Q ++ + F E L G P VV YT +I AL
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ M CL +L Y +I+ + A F++L+ G P Y MI ++
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681
Query: 452 ASGRL 456
SG++
Sbjct: 682 MSGKV 686
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G P ++ Y++LI + E K EA + +E + D Y +I+ ++
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR-----IFMASGRLAKCRDVCKEAEMAGF 471
+ A + ++ +AG PT Y +I+ +A RLA DV G+
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF-GY 740
Query: 472 KLDKQTVVELLQ 483
+ Q V ++
Sbjct: 741 QTTDQDAVSVMS 752
>gi|22773251|gb|AAN06857.1| Hypothetical protein [Oryza sativa Japonica Group]
Length = 769
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 275 KGGNLKLA--WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
KGG ++A W M+ + +L I ++L++ K +Y D+
Sbjct: 188 KGGRERMALLWLGDMIKRG---LLPDEITMSIVLQVHKKAGEYEKAELFFKRWSLESDVK 244
Query: 333 LSQQDCTAIMKVGIRLQKFGV------VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ C ++ + +G V F+ G P VV + T+IH ++
Sbjct: 245 MKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFNTMIHVWGKHRRM 304
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+ +++ ME CL D Y ++I L+ +NDI A YF K+K P R +
Sbjct: 305 EQVASLMRTMEEFQCLPDTRTYNILISLYREINDIDVAEYYFRKMKAENLLPDVVSCRTL 364
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ + G + + + + KE +D+ T
Sbjct: 365 LYGYSIKGMVTEAQALLKEMYERNMVIDEYT 395
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 49/192 (25%)
Query: 322 LDELGQRDDLNLSQQDCTAIMK--------VGIRLQKFGVVESL------FHWFTHSGRD 367
+D G+R + L+++ +K + ++ +G+VE L G
Sbjct: 432 IDAFGERGHILLAEKAFMCCIKRKMLSTCVCNVMIKAYGLVEKLDEACEIADGMERYGIL 491
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-------------------------NCL 402
P + Y++LIH + K +AL + M+A+ +CL
Sbjct: 492 PDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLLIDCVPYSVVISCFAKNGNLHMVDCL 551
Query: 403 F----------DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
F D Y ++I + + D+ +A YF LK+AG C + IY +I+++
Sbjct: 552 FREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAGLCESATIYNSLIKLYTK 611
Query: 453 SGRLAKCRDVCK 464
LA+ + K
Sbjct: 612 VVYLAEAQKTYK 623
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 90/225 (40%), Gaps = 32/225 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A GF G+LK A+ LL M +I NPD TL+D LG+
Sbjct: 243 ALVYGFCIMGHLKEAFSLL------NEMKLKNI----------NPD-VCTFNTLIDALGK 285
Query: 328 RDDLNLSQQDCTAIMKVGIR---------------LQKFGVVESLFHWFTHSGRDPTVVM 372
+ ++ +MK I+ L K + +F+ SG P V
Sbjct: 286 EGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRT 345
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
YTT+I EK EA+++ M+ N + D+ Y +I + + RAI K+K
Sbjct: 346 YTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMK 405
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
E G P Y ++ GRL ++ + + G+ L+ QT
Sbjct: 406 EQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQT 450
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G P V YT +I +K EA+++ M+ N ++ Y +I
Sbjct: 563 VFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALC 622
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ + RAI ++KE G P Y ++ SGRL +++ + + G+ L+ Q
Sbjct: 623 KNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQ 682
Query: 477 TVVELLQ 483
++
Sbjct: 683 VYTAMIN 689
>gi|115450907|ref|NP_001049054.1| Os03g0162900 [Oryza sativa Japonica Group]
gi|108706330|gb|ABF94125.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547525|dbj|BAF10968.1| Os03g0162900 [Oryza sativa Japonica Group]
gi|222624238|gb|EEE58370.1| hypothetical protein OsJ_09514 [Oryza sativa Japonica Group]
Length = 823
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 275 KGGNLKLA--WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
KGG ++A W M+ + +L I ++L++ K +Y D+
Sbjct: 188 KGGRERMALLWLGDMIKRG---LLPDEITMSIVLQVHKKAGEYEKAELFFKRWSLESDVK 244
Query: 333 LSQQDCTAIMKVGIRLQKFGV------VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ C ++ + +G V F+ G P VV + T+IH ++
Sbjct: 245 MKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFNTMIHVWGKHRRM 304
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+ +++ ME CL D Y ++I L+ +NDI A YF K+K P R +
Sbjct: 305 EQVASLMRTMEEFQCLPDTRTYNILISLYREINDIDVAEYYFRKMKAENLLPDVVSCRTL 364
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ + G + + + + KE +D+ T
Sbjct: 365 LYGYSIKGMVTEAQALLKEMYERNMVIDEYT 395
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 49/192 (25%)
Query: 322 LDELGQRDDLNLSQQDCTAIMK--------VGIRLQKFGVVESL------FHWFTHSGRD 367
+D G+R + L+++ +K + ++ +G+VE L G
Sbjct: 432 IDAFGERGHILLAEKAFMCCIKRKMLSTCVCNVMIKAYGLVEKLDEACEIADGMERYGIL 491
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-------------------------NCL 402
P + Y++LIH + K +AL + M+A+ +CL
Sbjct: 492 PDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLLIDCVPYSVVISCFAKNGNLHMVDCL 551
Query: 403 F----------DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
F D Y ++I + + D+ +A YF LK+AG C + IY +I+++
Sbjct: 552 FREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAGLCESATIYNSLIKLYTK 611
Query: 453 SGRLAKCRDVCK 464
LA+ + K
Sbjct: 612 VVYLAEAQKTYK 623
>gi|359486048|ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic [Vitis vinifera]
gi|298204537|emb|CBI23812.3| unnamed protein product [Vitis vinifera]
Length = 659
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 7/189 (3%)
Query: 299 SIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
S Y+ I +GK NP K + + + + R+++++ C +++ IR KF
Sbjct: 136 SSYSTYIKFMGKSLNPIKALEIYNSIQDESVRNNVSV----CNSVLSCLIRNGKFENSLK 191
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKC-REALTVVWNMEASNCLFDLPAYRVVIKLF 415
LFH G P V Y+TL+ + K +AL +V ME S D Y ++ +
Sbjct: 192 LFHQMKQDGLRPDAVTYSTLLAGCMKVKHGYSKALELVQEMERSRLPMDSVIYGTLLAVC 251
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ N A YF+++K+ G P Y ++ + A G K + ++ + AG +K
Sbjct: 252 ASNNRCKEAENYFNQMKDEGHLPNVFHYSSLLNAYSADGDYKKADMLVQDMKSAGLVPNK 311
Query: 476 QTVVELLQI 484
+ LL++
Sbjct: 312 VILTTLLKV 320
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 143/369 (38%), Gaps = 29/369 (7%)
Query: 141 PTPKKRVCLASSRASICKQVYKNPSFLI----------SLARDIKGLDSHKDVAEVLDKC 190
P+PK+R+ L + A + NPS + +L + L +A LD
Sbjct: 33 PSPKRRLLLQARAAKPNVLIPINPSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDPF 92
Query: 191 GRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKV 250
L + +E +R+L+ F + Q+Q P++ + + +L R L
Sbjct: 93 KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDK 152
Query: 251 PFKLENFVSLASKGVLE------ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YA 302
E F + S GV+ A + + G + +LL K + PSI Y
Sbjct: 153 C--REVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQ--ERVSPSILTYN 208
Query: 303 KLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359
+I + + ++ L E+ G + D+ A G+ + E +F
Sbjct: 209 TVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDE----AEMVFR 264
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
SG P + Y+ L+ + + + ++ ME L D+ +Y V+++ + L
Sbjct: 265 TMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELG 324
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
I A+ F +++ AG Y ++ ++ GR RD+ E +++ D T
Sbjct: 325 SIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYN 384
Query: 480 ELLQIEKES 488
L+Q+ E
Sbjct: 385 ILIQVFGEG 393
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 14/177 (7%)
Query: 311 NPDKYMLVMTLLDELGQRDD-------LNLSQQDCTAIMKVGIRLQKFGV------VESL 357
N Y +++ L + G+ DD + +S D A I +Q FG V +L
Sbjct: 344 NAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDA-GTYNILIQVFGEGGYFKEVVTL 402
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
FH +P + Y LI + +A ++ +M + AY VI+ F
Sbjct: 403 FHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQ 462
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A+ F+ + E G PT + Y +I F G + + +G K D
Sbjct: 463 AALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRD 519
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
GV L H +G P + Y TLI + +A+ V M AS C DL Y +
Sbjct: 48 GVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 107
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ + A F +L E GF P Y ++ F G + + VC+E AGF
Sbjct: 108 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 167
Query: 472 KLDKQTVVELLQI 484
+ D T ++ +
Sbjct: 168 RKDGITYNTMIHM 180
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G+ + + K ++E G PD + +LL + D+ ++ C ++K G R K G
Sbjct: 115 GKAQEAELMFKELVEKGFQPDA-VTYNSLLYAFAKEGDVERVERVCEELVKAGFR--KDG 171
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
+ Y T+IH + AL + M A C D Y V++
Sbjct: 172 IT------------------YNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLV 213
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
++ IS A + ++ +AG PT + +I + SGR +G K
Sbjct: 214 DSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVK 273
Query: 473 LDKQTVVELLQI 484
D+ + +L +
Sbjct: 274 PDRLAYLVMLDV 285
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 6/213 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE--LGKNPDKYMLVMTLLDELGQRD 329
G K G + A +L + + GG + +Y LI + N ++ + ++ + G
Sbjct: 384 GLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMEL 443
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D++L + K QK +SL H G P V+YTT++ + K EA
Sbjct: 444 DVSLYGTLIWGLCKD----QKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEA 499
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ ++ + S ++ Y +I IS AI +F+K++E G P Y +I
Sbjct: 500 VALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDG 559
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
F G L K + E G LDK L+
Sbjct: 560 FCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLI 592
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 13/229 (5%)
Query: 255 ENFVSLASKGVLEATA-------KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
+N +SL +G ++A G N + A LL K+ G LD S+Y LI
Sbjct: 395 DNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWG 454
Query: 308 LGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365
L K+ D+ ++ + G R + + T IM + K +L H SG
Sbjct: 455 LCKDQKVDEAKSLLHKMAGCGLRPNTVIY----TTIMDALFKAGKESEAVALLHKILDSG 510
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
P VV Y LI EA++ M ++ AY +I F + +++A+
Sbjct: 511 FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAM 570
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+++ + G +Y +I +M L + + +G +LD
Sbjct: 571 HLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLD 619
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 36/99 (36%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G P VV Y +LI E +V M S C D+ Y +I F
Sbjct: 221 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCF 280
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ +A YF ++K G + + F G
Sbjct: 281 SKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEG 319
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 51/132 (38%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q TA++ ++ L + G V+YT+LI + + ++A +
Sbjct: 551 QAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTK 610
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
M S DL Y I F +N + A S++ G P +Y +IR + G
Sbjct: 611 MIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGN 670
Query: 456 LAKCRDVCKEAE 467
+ + + E E
Sbjct: 671 MEEASSLQNEME 682
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
GV L H +G P + Y TLI + +A+ V M AS C DL Y +
Sbjct: 275 GVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 334
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ + A F +L E GF P Y ++ F G + + VC+E AGF
Sbjct: 335 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 394
Query: 472 KLDKQTVVELLQI 484
+ D T ++ +
Sbjct: 395 RKDGITYNTMIHM 407
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F G PTV ++ + + + + E VV ++ + ++++ F
Sbjct: 803 AIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAF 862
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
D+ ++ ++ +K AG+ P +YR MI + + R + E E AGFK D
Sbjct: 863 AKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPD 921
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 23/200 (11%)
Query: 287 MVAKDG--GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344
MV+ G G+ + + K ++E G PD + +LL + D+ ++ C ++K
Sbjct: 334 MVSVHGRCGKAQEAELMFKELVEKGFQPDA-VTYNSLLYAFAKEGDVERVERVCEELVKA 392
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G R K G+ Y T+IH + AL + M A C D
Sbjct: 393 GFR--KDGIT------------------YNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD 432
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
Y V++ ++ IS A + ++ +AG PT + +I + SGR
Sbjct: 433 AVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFD 492
Query: 465 EAEMAGFKLDKQTVVELLQI 484
+G K D+ + +L +
Sbjct: 493 RMVESGVKPDRLAYLVMLDV 512
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 97/229 (42%), Gaps = 20/229 (8%)
Query: 234 LLASTVEVLARHHELKVPFKLENFV------SLASKGVLEATAKGFVKGGNLKLAWKLLM 287
+L+ V ++ + +LK+ + ENFV S + + A + + G + A +
Sbjct: 747 ILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFD 806
Query: 288 VAKDGGRMLDPSIYA------KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
+ G + P++ + LI++ G+ + Y++V L D D+ +S+ +
Sbjct: 807 IMIKKGPL--PTVESVNGMMRALIVD-GRLDELYVVVQELQDL-----DIKISKSTVLLM 858
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
++ + V +++ +G P + +Y +I K+ R+ +V ME +
Sbjct: 859 LEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGF 918
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
DL ++ ++ + R I + + EAG P D Y +I ++
Sbjct: 919 KPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMY 967
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 24/310 (7%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE-LKVPFKL--- 254
S+ + G NLP++AL+ F + + P + L +E+L H +K F L
Sbjct: 138 FSYIINIYGEANLPDKALKIF-YTILKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKD 196
Query: 255 ----ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
+ F + S +L + F G + +A+ L M D Y L+ L +
Sbjct: 197 AHTYDVFPNTKSYNIL---IRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCR 253
Query: 311 NPDKYMLVMTLLDELGQR---DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD 367
V L D L + D L+ T ++ R +K L G +
Sbjct: 254 KSQVNGAVDLLEDMLNKGYVPDALSY-----TTLLNSLCRKKKLREAYKLLCRMKVKGCN 308
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P ++ Y T+I E + +A V+ +ME++ C+ +L +YR ++ A +
Sbjct: 309 PDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSH 368
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT----VVELLQ 483
++ GF P + + +I+ F G++ + V +E G +T V + +
Sbjct: 369 LEEMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRICE 428
Query: 484 IEKESRIGTI 493
++ RIG I
Sbjct: 429 VDDLQRIGEI 438
>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 130/322 (40%), Gaps = 38/322 (11%)
Query: 181 KDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE 240
+++ VLD+CG L + + H P A + FCWA ++ D R S +
Sbjct: 80 RNMEAVLDECGINLSHDLVIDVLERFCHARKP--AFRFFCWAGEKQGFEHDSRTYNSMMS 137
Query: 241 VLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI 300
+LA+ + E VS+ + E KG + +A + AK+ +
Sbjct: 138 ILAKTRQ------FETVVSM----LEEMGGKGVLTMDTFSIAMRAFAAAKERKK------ 181
Query: 301 YAKLILELGKNPDKYMLVMT---LLDELGQRDDLNLSQQ---------------DCTAIM 342
A + EL K + + V T LLD LG R L Q T ++
Sbjct: 182 -AVAMFELMKKYNYKVGVETINHLLDSLG-RAKLGKEAQALFENLKGRFTPNLRTYTVLL 239
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
+++ S+++ G P +V + ++ L K+ +A+ + M+A
Sbjct: 240 NGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPS 299
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ +Y ++I+ + + A+ YF ++ ++G P +Y +I F R+ D+
Sbjct: 300 PDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDL 359
Query: 463 CKEAEMAGFKLDKQTVVELLQI 484
KE + G D T L+++
Sbjct: 360 LKEMKEEGCPPDGLTYNALIKL 381
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 55/144 (38%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +++ R K F SG P +YT LI + K+ ++ M+
Sbjct: 306 TILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKE 365
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
C D Y +IKL L A R + K+ ++G PT Y +++ + +
Sbjct: 366 EGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEM 425
Query: 459 CRDVCKEAEMAGFKLDKQTVVELL 482
R V E GF D + L+
Sbjct: 426 GRAVWDEMSRKGFCPDDNSYTVLI 449
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
GV L H +G P + Y TLI + +A+ V M AS C DL Y +
Sbjct: 115 GVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 174
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ + A F +L E GF P Y ++ F G + + VC+E AGF
Sbjct: 175 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 234
Query: 472 KLDKQTVVELLQI 484
+ D T ++ +
Sbjct: 235 RKDGITYNTMIHM 247
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F G PTV ++ + + + + E VV ++ + ++++ F
Sbjct: 643 AIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAF 702
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
D+ ++ ++ +K AG+ P +YR MI + + R + E E AGFK D
Sbjct: 703 AKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPD 761
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 23/200 (11%)
Query: 287 MVAKDG--GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344
MV+ G G+ + + K ++E G PD + +LL + D+ ++ C ++K
Sbjct: 174 MVSVHGRCGKAQEAELMFKELVEKGFQPDA-VTYNSLLYAFAKEGDVERVERVCEELVKA 232
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G R K G+ Y T+IH + AL + M A C D
Sbjct: 233 GFR--KDGIT------------------YNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD 272
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
Y V++ ++ IS A + ++ +AG PT + +I + SGR
Sbjct: 273 AVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFD 332
Query: 465 EAEMAGFKLDKQTVVELLQI 484
+G K D+ + +L +
Sbjct: 333 RMVESGVKPDRLAYLVMLDV 352
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 97/229 (42%), Gaps = 20/229 (8%)
Query: 234 LLASTVEVLARHHELKVPFKLENFV------SLASKGVLEATAKGFVKGGNLKLAWKLLM 287
+L+ V ++ + +LK+ + ENFV S + + A + + G + A +
Sbjct: 587 ILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFD 646
Query: 288 VAKDGGRMLDPSIYA------KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
+ G + P++ + LI++ G+ + Y++V L D D+ +S+ +
Sbjct: 647 IMIKKGPL--PTVESVNGMMRALIVD-GRLDELYVVVQELQDL-----DIKISKSTVLLM 698
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
++ + V +++ +G P + +Y +I K+ R+ +V ME +
Sbjct: 699 LEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGF 758
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
DL ++ ++ + R I + + EAG P D Y +I ++
Sbjct: 759 KPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMY 807
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
LA +LEA KGGN+ A+K+ G D YA I + + + V
Sbjct: 253 LAYNSLLEA----LCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHS-VF 307
Query: 320 TLLDELGQRDDL-NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTT 375
++LD + + D + N+ +C I+K +L K G VE L H G P Y T
Sbjct: 308 SVLDRMKRYDLVPNVFTYNC--IIK---KLCKNGKVEDAYQLLHEMMERGVSPDAWSYNT 362
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
++ + A ++ M NCL D +Y +++KL V + RA + + E G
Sbjct: 363 ILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGERG 422
Query: 436 FCPTYDIYRDMI 447
F P+ Y MI
Sbjct: 423 FYPSVSTYSVMI 434
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 305 ILELGKNPDKYMLVMTLLDEL--GQRDDLNLSQQDC--TAIMKVGIRLQKFGVVESLFHW 360
+ ++GK D ++LL+E+ G + N +C K G F LF
Sbjct: 367 LCKVGKEEDG----LSLLEEMKMGNINRPNTVTYNCLIDGFFKAG----NFDRAHELFRQ 418
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
G P V+ TL+ + A+ M+ + Y +I F +N+
Sbjct: 419 MNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNN 478
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
I+RA++ F ++ +G P +Y +I +GR+ V + ++AGF LD+
Sbjct: 479 INRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDR 533
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 7/180 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G G + A ++ K G LD S Y LI K ++ ++T ++E G +
Sbjct: 507 GLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKP 566
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D + + K G F + G P+VV Y +IH+ S+K E
Sbjct: 567 DTITYNTLISYLGKTG----DFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEG 622
Query: 390 LTVVWNM-EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ + M S + Y ++I ND+ RAI +K P Y +++
Sbjct: 623 MKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILK 682
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 2/201 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K GN A +L + G + L+ L K+ + V + G+ L
Sbjct: 402 GFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGK--GL 459
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ TA++ + F SG P V+Y +LI + +A
Sbjct: 460 KGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASV 519
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
VV ++ + D Y V+I F + R ++++E G P Y +I
Sbjct: 520 VVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLG 579
Query: 452 ASGRLAKCRDVCKEAEMAGFK 472
+G A V ++ G +
Sbjct: 580 KTGDFATASKVMEKMIKEGLR 600
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 96/235 (40%), Gaps = 2/235 (0%)
Query: 250 VPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG 309
V +++N+ +S V + G +KGGN A ++ + K G Y LI G
Sbjct: 219 VFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYG 278
Query: 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
K+ +M + + L + N+ TA++ R E +F +G +P
Sbjct: 279 KDGKSFMALKVFNEMLSHKCKPNICTY--TALVNAFAREGLCEKAEEVFEQMQEAGLEPD 336
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
V Y L+ + A + M+ C D +Y +++ + ++ A F
Sbjct: 337 VYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFE 396
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+K G PT + ++ F +G ++KC D+ + +G KLD + +L +
Sbjct: 397 DMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNL 451
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 10/226 (4%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQ 327
+G + G + A+KL D ++ + +Y LI + G+ D + + +L LG
Sbjct: 487 EGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML-RLGC 545
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
DL L + K G ++K +LF + G P YT LIH +
Sbjct: 546 SPDLLLLNTYMDCVFKAG-EIEK---GRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EA + + M+ C+ D AY VI F +++A + ++K G PT Y +I
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G +L+ V+ I+ ++G I
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELN--VVIYSSLIDGFGKVGRI 705
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 117/312 (37%), Gaps = 24/312 (7%)
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENF 257
S + + L A + F + K+ D R + ++ + ++ ++L
Sbjct: 586 SYTILIHGLVKAGFAHEAYELF-YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL--L 642
Query: 258 VSLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK- 310
+ +KG + G K L A+ L AK G L+ IY+ LI GK
Sbjct: 643 EEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV 702
Query: 311 -NPDKYMLVMTLLDELGQRDDL-NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
D+ L+M +EL Q+ N+ +C ++ ++ ++ F P
Sbjct: 703 GRIDEAYLIM---EELMQKGLTPNVYTWNC--LLDALVKAEEISEALVCFQSMKDLKCTP 757
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
+ Y+ LIH +K +A M+ ++ Y +I +I A F
Sbjct: 758 NYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLF 817
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ----- 483
K KE G IY +I + R + + +EA + G + +T V LL
Sbjct: 818 EKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKA 877
Query: 484 --IEKESRIGTI 493
IE+ + +G +
Sbjct: 878 ECIEQAAIVGAV 889
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 12/194 (6%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G + +AWK K G +LD Y +I L K D+ + L + + Q +
Sbjct: 280 FGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCK-ADRLNEAVELFEHMDQNKQVP 338
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
+ T IM G+ KF SL G P+VV Y ++ + + EAL
Sbjct: 339 CAYAYNTMIMGYGMA-GKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKK 397
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M+ + + +L Y ++I + + A+ +K+AG P ++I + +
Sbjct: 398 FEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFP------NVITVNIM 450
Query: 453 SGRLAKCR---DVC 463
RL K + D C
Sbjct: 451 VDRLCKAQRLDDAC 464
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+++ V R +KF +E + + +G P+ ++ S + +K REA T + M
Sbjct: 134 NSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRK 193
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
AY +I D + F +++E G+ ++ +IR+F GR+
Sbjct: 194 LKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251
>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Cucumis sativus]
Length = 576
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 8/223 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V A G VKGGN A ++ K G Y LI GK +M + DE
Sbjct: 227 VYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHM-AQNIFDE 285
Query: 325 L-GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
+ QR N+ TA++ R E +F +G +P V Y L+ S
Sbjct: 286 MRTQRCKPNICT--FTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRA 343
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLF--VALNDISRAIRYFSKLKEAGFCPTYD 441
A + M+ C D +Y +++ + L++ ++A+ F ++K G PT
Sbjct: 344 GFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV--FEEMKRIGITPTMK 401
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ ++ + ++G +AKC D+ + +G K D + +L +
Sbjct: 402 SHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNL 444
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 10/226 (4%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQ 327
+G + G + A+KL D ++ + +Y LI + G+ D + + +L LG
Sbjct: 487 EGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML-RLGC 545
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
DL L + K G ++K +LF + G P YT LIH +
Sbjct: 546 SPDLLLLNTYMDCVFKAG-EIEK---GRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EA + + M+ C+ D AY VI F +++A + ++K G PT Y +I
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G +L+ V+ I+ ++G I
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELN--VVIYSSLIDGFGKVGRI 705
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 12/194 (6%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G + +AWK K G +LD Y +I L K D+ + L + + Q +
Sbjct: 280 FGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCK-ADRLNEAVELFEHMDQNKQVP 338
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
+ T IM G+ KF SL G P+VV Y ++ + + EAL
Sbjct: 339 CAYAYNTMIMGYGMA-GKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKK 397
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M+ + + +L Y ++I + + A+ +K+AG P ++I + +
Sbjct: 398 FEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFP------NVITVNIM 450
Query: 453 SGRLAKCR---DVC 463
RL K + D C
Sbjct: 451 VDRLCKAQRLDDAC 464
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 117/312 (37%), Gaps = 24/312 (7%)
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENF 257
S + + L A + F + K+ D R + ++ + ++ ++L
Sbjct: 586 SYTILIHGLVKAGFAHEAYELF-YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL--L 642
Query: 258 VSLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK- 310
+ +KG + G K L A+ L AK G L+ IY+ LI GK
Sbjct: 643 EEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV 702
Query: 311 -NPDKYMLVMTLLDELGQRDDL-NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
D+ L+M +EL Q+ N+ +C ++ ++ ++ F P
Sbjct: 703 GRIDEAYLIM---EELMQKGLTPNVYTWNC--LLDALVKAEEISEALVCFQSMKDLKCTP 757
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
+ Y+ LIH +K +A M+ ++ Y +I +I A F
Sbjct: 758 NYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLF 817
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ----- 483
K KE G IY +I + R + + +EA + G + +T V LL
Sbjct: 818 EKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKA 877
Query: 484 --IEKESRIGTI 493
IE+ + +G +
Sbjct: 878 ECIEQAAIVGAV 889
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+++ V R +KF +E + + +G P+ ++ S + +K REA T + M
Sbjct: 134 NSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRK 193
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
AY +I D + F +++E G+ ++ +IR+F GR+
Sbjct: 194 LKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251
>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
Length = 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 14/240 (5%)
Query: 257 FVSLASKGVLEATAK------GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LE 307
F ++ +GV+ F K G ++ A KL + G L+ Y LI +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340
Query: 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD 367
G+ D + LLDE+ R + L+ T ++ + +K E + +G
Sbjct: 341 AGRLDD----AIVLLDEM-VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
++YTTLIH K +AL ++ M+ D+ Y +I+ ++ + A
Sbjct: 396 ANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSL 455
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
+K+ E+G P Y IY M+ SG++ + + ++ +GF+ + + E +Q+ E
Sbjct: 456 LTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNE 515
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 73/196 (37%), Gaps = 20/196 (10%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
G N + A LL K+ G LD S+Y LI L D+ ++T +DE G
Sbjct: 407 GHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466
Query: 330 DLNLSQQDCTAIMKVG------IRLQKF---------GVVE---SLFHWFTHSGRDPTVV 371
+ + A K G LQK G + LF+ H G V
Sbjct: 467 NYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKV 526
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
+YT L+ L + +A + M S DL Y I F LN + A FS++
Sbjct: 527 VYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 586
Query: 432 KEAGFCPTYDIYRDMI 447
G P +Y +I
Sbjct: 587 IGHGIAPDRAVYNCLI 602
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 95/267 (35%), Gaps = 13/267 (4%)
Query: 226 PHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKL 285
HL DRL A + VL+R L+ P + V L + L A G + + L
Sbjct: 72 AHLLARDRLYAHSRRVLSRLVALRRPHLAASLVDLLHRAAL---ALGPRRSALASVVDTL 128
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNPD----KYMLVMTLLDELGQRDDLNLSQQDCTAI 341
L V D G + D + EL P+ ++L+ D G+ Q +
Sbjct: 129 LSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAPNV 188
Query: 342 MKVGIRLQ------KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
I + + SLF G P VV + +LI + E +V
Sbjct: 189 FTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
M S C D+ Y +I F + A YF+ +K G + + F G
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308
Query: 456 LAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ + + + + G L++ T L+
Sbjct: 309 VREAMKLFAQMRVRGMALNEFTYTCLI 335
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 6/190 (3%)
Query: 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE---SLFHW 360
+I LG N +K+ L ++L D + R+D +S + + I + L K G V SL H
Sbjct: 112 IIKGLGFN-NKFDLALSLFDFIRTRND-RVSLLNGSVIAVIVSILGKTGRVSRAASLLHN 169
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN- 419
G + V YT+LI + + KK R+AL V M+ C L Y ++ ++ +
Sbjct: 170 LEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGM 229
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
++ I +K G P Y +I A + D+ +E ++AGF+ D T
Sbjct: 230 PWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYN 289
Query: 480 ELLQIEKESR 489
LL + +SR
Sbjct: 290 ALLDVYGKSR 299
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG +P V+ YT I + EK R V+ ME C ++ + +++ I+
Sbjct: 363 SGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINE 422
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A++ + K+K+ G P Y +I I +GRL +++ ++ E G D T L+
Sbjct: 423 ALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLI 481
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 59/146 (40%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA ++ R + F V+ + H G P V+ +T ++H+ K+ EAL V M+
Sbjct: 373 TAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKK 432
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
C+ D Y +I + ++ +++ G P Y +I A +
Sbjct: 433 EGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEET 492
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQI 484
+ + E K D +T LL++
Sbjct: 493 ALTLLLKMEEVSCKPDLKTYHPLLKM 518
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL H G D V YT++I + S + REA+ V ME C L Y V++ ++
Sbjct: 186 SLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVY 245
Query: 416 VALN-DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+ ++ + ++K AG P Y +I + V KE ++AGF D
Sbjct: 246 GKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPD 305
Query: 475 KQTVVELLQIEKESR 489
K T LL + +SR
Sbjct: 306 KVTYNALLDVYGKSR 320
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V YTTL+ K + A+ + M C ++ + +IK+ +
Sbjct: 371 GIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEM 430
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
++ F +K P + ++ +F +G ++ V KE + AGF ++ T L I
Sbjct: 431 MKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL--I 488
Query: 485 EKESRIGTI 493
SR G+
Sbjct: 489 SSYSRCGSF 497
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 6/257 (2%)
Query: 183 VAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242
+A LD G + ++ ++ L + + AL F WA++Q + +E L
Sbjct: 118 IASTLDALGVAMSPELVAEVLKNLSNAGM--LALAFFRWAERQEGFSYTAEGFHNLIEAL 175
Query: 243 ARHHELKVPFKLENFV---SLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS 299
+ + K+ + L + L SK + + + + +K A + G + S
Sbjct: 176 GKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELS 235
Query: 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359
Y LI L K+ + + E+ ++ + T +M+ + +V++++
Sbjct: 236 DYNWLIDTLSKS-KQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQ 294
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
+G P VV Y LI + KC EA+ V + MEAS C+ Y ++I +
Sbjct: 295 EMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEE 354
Query: 420 DISRAIRYFSKLKEAGF 436
+ A++YF + K++GF
Sbjct: 355 RLDEALKYFEQYKKSGF 371
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG +P V+ YT I + EK R V+ ME C ++ + +++ I+
Sbjct: 340 SGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINE 399
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A++ + K+K+ G P Y +I I +GRL +++ ++ E G D T L+
Sbjct: 400 ALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLI 458
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 48/117 (41%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA ++ R + F V+ + H G P V+ +T ++H+ K+ EAL V M+
Sbjct: 350 TAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKK 409
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
C+ D Y +I + ++ +++ G P Y +I A +
Sbjct: 410 EGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQ 466
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 339 TAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
T VGI R ++FG + L G P VV Y LIHS REAL V M
Sbjct: 385 TYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQM 444
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ C D Y +I + + A+ + +++E G P Y MI SG L
Sbjct: 445 QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNL 504
Query: 457 A 457
+
Sbjct: 505 S 505
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQR 328
G+ G + A+ LL + G + + Y LI L K D+ M V ++ G
Sbjct: 283 GYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCE 342
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + K G+ + + V++ + G P+ V Y ++ + +++ E
Sbjct: 343 ADIVTYTALISGFCKWGMIDKGYSVLDDM----RKKGVMPSQVTYMQILVAHEKKEQFEE 398
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
L ++ M+ C DL Y VVI+L ++ A+R +++++ G P D++ MI
Sbjct: 399 CLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVIMIN 458
Query: 449 IFMASGRL 456
F + G L
Sbjct: 459 GFTSQGYL 466
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 12/189 (6%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD-----KYMLVMTLLDELGQ 327
F K G A K+ + G M P +Y LI LG KY EL +
Sbjct: 329 FCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYF-------ELSK 381
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
+ C A++ R KF + SG P Y ++H + +K
Sbjct: 382 ASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIE 441
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EA V M C L Y +++ +F + + A++ ++++KE G P ++ +I
Sbjct: 442 EAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALI 501
Query: 448 RIFMASGRL 456
RL
Sbjct: 502 NGLCFENRL 510
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R +K + L+H F SG +P V+M+ LIH S K +A+TV+ NME NC +L
Sbjct: 546 RDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLV 605
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
Y +++ + + D +RA + + + G P Y +++
Sbjct: 606 TYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILK 647
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q ++K+ + ++F +W G P V Y+T+I+ K +AL +
Sbjct: 150 QTYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDE 209
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK-LKEAGFCPTYDIYRDMIRIFMASG 454
M D+ Y ++I F+ D A++ + K L+++ P + MI G
Sbjct: 210 MSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCG 269
Query: 455 RLAKC 459
R+ C
Sbjct: 270 RVDDC 274
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 5/184 (2%)
Query: 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326
++ KG G + A KL V K G + Y + L KN D M L EL
Sbjct: 394 DSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKN-DCLFEAMKLFTEL- 451
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ + L ++ ++ + K LF ++ G +P VV YT +IH E +
Sbjct: 452 KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQV 511
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP---TYDIY 443
+A ++ MEA+ C D+ Y +++ F N + ++ ++ + P T I
Sbjct: 512 DKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIV 571
Query: 444 RDMI 447
DM+
Sbjct: 572 VDML 575
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 5/180 (2%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG G + A KL V K G + Y + L KN D M L EL + +
Sbjct: 373 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKN-DCLFEAMKLFTEL-KSSN 430
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L ++ ++ + K LF ++ G +P VV YT +IH E + +A
Sbjct: 431 FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN 490
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP---TYDIYRDMI 447
++ MEA+ C D+ Y +++ F N + ++ ++ + P T I DM+
Sbjct: 491 VLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDML 550
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 8/215 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L L EL +++
Sbjct: 1405 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA-KRYDLACELFQEL--KENC 1461
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCRE 388
S A+M L K G ++ + F G P V Y L+ E
Sbjct: 1462 GSSSARVYAVMIK--HLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDE 1519
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
AL+ + M+ C+ D+ +Y +++ RA+ S +K++ P Y ++
Sbjct: 1520 ALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLG 1579
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + KE GF+ D T +L+
Sbjct: 1580 ALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILE 1614
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 19/284 (6%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS VR LG+ + +A+ F + K P + S + +L + + +L N
Sbjct: 1152 LSDVVRMLGNAKMVRQAITIF-YQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYN-- 1208
Query: 259 SLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
++++G A F K G A +LL K+ G IY LI K
Sbjct: 1209 EMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKF 1268
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---P 368
D + ++L +E+ + + D ++ L K G ++ +H+F R+ P
Sbjct: 1269 NDAHG-ALSLFEEMRHQ----YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP 1323
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRY 427
V +I+ + +A+ + ME C+ + Y +IK LF + + S +
Sbjct: 1324 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSW 1383
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F ++KE+G P+ Y +I F + R+ K + +E + GF
Sbjct: 1384 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 1427
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 118/289 (40%), Gaps = 10/289 (3%)
Query: 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST-VEVLARHHELKVPFKLENFVS 259
F +RELG+ ++A+ F +A K+ + LAS + L R KV F +
Sbjct: 45 FLLRELGNRGDCKKAICCFEFAVKRERKKNEQGKLASAMISTLGRLG--KVEMAKTVFKA 102
Query: 260 LASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD 313
++G A + + G A K+ KD G + Y +I GK
Sbjct: 103 ALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGV 162
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
++ V+ + DE+ R+ + + +++ V + + SL + G D + Y
Sbjct: 163 EFKRVLEIFDEM-LRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTY 221
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
TL+ + + A ++ M A N L ++ Y +I + + A F+++K
Sbjct: 222 NTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKF 281
Query: 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
G Y ++ I+ GR + DVC+E E +G + D T LL
Sbjct: 282 LGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALL 330
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 127/318 (39%), Gaps = 39/318 (12%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
L I L ++ VA++LD + F V+ +G + +RAL+ F W +
Sbjct: 130 LTDKILSLKPNQFVADILDARPVQMTPTDYCFVVKSVGQESW-QRALEVFEWLNLRHWHS 188
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVA 289
P+ R++A+ + VL R N SLA +E + G+ + +M
Sbjct: 189 PNARMVAAILGVLGRW----------NQESLA----VEIFTRAEPTVGDRVQVYNAMM-- 232
Query: 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGI 346
+Y++ K+ LLD + QR DL A +K G
Sbjct: 233 ---------GVYSR--------SGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSG- 274
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
L VVE L +SG P + Y TL+ + + A+ V +MEA C DL
Sbjct: 275 GLTPNLVVE-LLDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLW 333
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I ++ + A R F +L+ GF P Y ++ F K ++V ++
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 467 EMAGFKLDKQTVVELLQI 484
+ GF D+ T ++ +
Sbjct: 394 QKMGFGKDEMTYNTIIHM 411
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V ++ +G PT+ +Y +I K+ R+A +V ME +N +L + ++K
Sbjct: 876 VNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLK 935
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++ + D + ++ + ++KE+G P Y +I ++ CRD
Sbjct: 936 MYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMY--------CRD 975
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F+ G PTV L+H+ + + E VV ++ + +++ F
Sbjct: 808 AIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAF 867
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+I + +S +K AG+ PT +YR MI + R+ + E E A FK++
Sbjct: 868 ARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
MYT +I + K ++A +VV N+ S DL + ++ + RA F+ +
Sbjct: 754 MYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTM 813
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
G PT + ++ GRL + V +E + GFK+ K ++ LL ++ +R G
Sbjct: 814 MRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSI--LLMLDAFARAG 871
Query: 492 TI 493
I
Sbjct: 872 NI 873
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 7/197 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQR 328
G+ G + A+ L+ + G + + Y LI L K D+ M V ++ G
Sbjct: 280 GYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCE 339
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + K G+ + + V++ + G P+ V Y ++ + +++ E
Sbjct: 340 ADIVTYTALISGFCKWGMIDKGYSVLDDM----RKKGVMPSQVTYMQIMVAHEKKEQFEE 395
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
L ++ M+ C DL Y VVI+L L ++ A+R +++++ G P D + MI
Sbjct: 396 CLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMIN 455
Query: 449 IFMASGRLAKCRDVCKE 465
F + G L + + KE
Sbjct: 456 GFTSQGFLIEACNHFKE 472
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 340 AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+I+ G+ R +K + L+H F SG + V+M+ LIH S K +A+TV+ NME
Sbjct: 538 SILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEH 597
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
NC +L Y +++ F + D +RA + + + G P Y +++ L
Sbjct: 598 RNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMK------GLCM 651
Query: 459 CRDV 462
CR V
Sbjct: 652 CRGV 655
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ LF+ H G P V YTTLIH+ K REA + +M + L DL Y V+++
Sbjct: 391 KQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEG 450
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
F + +A R F ++ P +Y +I SG L R + E + G + D
Sbjct: 451 FCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPD 510
Query: 475 KQTVVELLQ 483
Q ++
Sbjct: 511 VQIYTTIIN 519
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K G L+ GV++++ T G +P V+ Y +L+H + + EA + M C
Sbjct: 313 KEGNVLEAQGVLKTM----TEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCK 368
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ +Y ++I + + I A + F+++ G P Y +I F G+L + R++
Sbjct: 369 PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAREL 428
Query: 463 CKEAEMAGFKLDKQTVVELLQ 483
K+ G+ D T LL+
Sbjct: 429 FKDMHTNGYLPDLCTYSVLLE 449
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
F H G P V +YTT+I+ E EAL ME C + +Y V+I+ F+ D
Sbjct: 503 FVH-GLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKD 561
Query: 421 ISRAIRYFSKLKEAGF 436
SRA++ ++++ GF
Sbjct: 562 ESRAVQLIGEMRDKGF 577
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F + G PTVV YT+LI S + +EA ++ M + N + D+ + ++I +F
Sbjct: 253 IFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFC 312
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
++ A + E G P Y ++
Sbjct: 313 KEGNVLEAQGVLKTMTEMGVEPNVITYNSLMH 344
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%)
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
L C+ ++ + K + +F H+G PT V+Y TLI+ + R A +
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M++ + D Y +I L +++A +++++G P+ + + +I +
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451
Query: 453 SGRLAKCRDVCKEAEMAGFKLD 474
+G+L KC V + + G K D
Sbjct: 452 AGQLEKCFTVLSDMQQKGIKSD 473
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+L+ E L SG DP+V + TLI + + + + TV+ +M+ D+
Sbjct: 416 KLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVI 475
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
++ V+K F I A+ + P +Y +I ++ SG
Sbjct: 476 SFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG 523
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
GF K GN A + AKD ++ IY +I + N D+ ++ ++ G
Sbjct: 385 GFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDA 444
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+++ VG + V E L G P+VV Y LI+ K +A
Sbjct: 445 PIDIYHTMMDGYTMVGNEEKCLTVFERL----KECGFAPSVVSYGCLINLYAKVGKISKA 500
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L V ME++ ++ Y ++I F+ L D + A F + + G P +Y ++IR
Sbjct: 501 LEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRA 560
Query: 450 FMASGRLAKCRDVCKEAEM 468
F G + R +C EM
Sbjct: 561 FCGMGTMD--RAICMVKEM 577
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV + LI + +++ +A+ ++ M + + Y ++ +
Sbjct: 608 VFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYA 667
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
AL D +A YF+KL++ G Y +++ SGR+ V K EM+ + +
Sbjct: 668 ALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK--EMSAQNIPRN 725
Query: 477 TVVELLQIEKESRIGTI 493
T V + I+ +R G +
Sbjct: 726 TFVYNILIDGWARRGDV 742
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 348 LQKFGVVESLFHWFTHSGRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
K G ++ WF + + ++Y +I++ +A +V ME
Sbjct: 386 FAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAP 445
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ Y ++ + + + + + F +LKE GF P+ Y +I ++ G+++K +V K
Sbjct: 446 IDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSK 505
Query: 465 EAEMAGFKLDKQTVVELLQ 483
E AG K + +T L+
Sbjct: 506 MMESAGIKHNMKTYSMLIN 524
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +PT +YT+LIH+ + EAL+ M+ L Y +++ F + + A
Sbjct: 336 GIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAA 395
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
R+F + K+ IY +MI + + + + + +E E G
Sbjct: 396 DRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGI 442
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/138 (18%), Positives = 57/138 (41%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
++L+ + ++F G P VV+Y +I + A+ +V M+
Sbjct: 527 LKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTS 586
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I F ++ RA+ F ++ +G PT + +I + ++ K ++ E
Sbjct: 587 RTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 646
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T ++
Sbjct: 647 MALAGVSPNEHTYTTIMH 664
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 127/317 (40%), Gaps = 23/317 (7%)
Query: 124 ERPLPLPLPHRLRPLELPTPKKRVCLASSRASICKQVYKNPSFLISLARDIKGLD-SHKD 182
ER PL + P + V ++ + +C+ V P I+ D G+ S +
Sbjct: 70 ERASAEPLRFTVTPGDAFGDGPPVGMSEAAKMVCRIVSTQPEPKIASTLDALGVAVSPEL 129
Query: 183 VAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242
VAEVL +LS N AL F WA++Q + +E L
Sbjct: 130 VAEVLK---------NLS---------NAGMLALAFFRWAERQEGFSYTAEGFHNLIEAL 171
Query: 243 ARHHELKVPFKLENFV---SLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS 299
+ + ++ + L + L SK + + + + +K A + G + S
Sbjct: 172 GKIKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELS 231
Query: 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359
Y LI L K+ + + E+ ++ + T +M+ + +V++++
Sbjct: 232 DYNWLIDTLSKS-KQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQ 290
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
+G P VV Y LI + KC EA+ V + MEAS C+ Y ++I +
Sbjct: 291 EMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEE 350
Query: 420 DISRAIRYFSKLKEAGF 436
+ A++YF K++GF
Sbjct: 351 RLDEALKYFEHYKKSGF 367
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 139/363 (38%), Gaps = 37/363 (10%)
Query: 105 AISSLFQGR-IPQKPGRLYRERPLPLPLPHRLRPLELPTPKKR----------VCLASSR 153
AI LF + P K R + LPL LP R P P R C A+
Sbjct: 11 AIHLLFTAKSAPAKNARTVFDEMLPL-LPSR--PCLAPLAHARHVLGGMRSSLFCTAAGP 67
Query: 154 ASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKG---SLSFTVRELGHMN 210
A+ ++ + F + D G S DV+EV ++ R + ++ + LG
Sbjct: 68 AAATHELSVDQQFTVVPGTDGDGPGS--DVSEVAERVCRVVSSQPEPRIASALDALGVNM 125
Query: 211 LPER--------------ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN 256
PE AL F WA++Q + +E L + + ++ + L
Sbjct: 126 SPELVAEVLRNLSNAGILALAFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVE 185
Query: 257 FV---SLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD 313
+ L SK + + + +K A + G D S Y LI L K+
Sbjct: 186 AMRCRGLLSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKS-K 244
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
+ + E+ + + T +M+ + +++S++ +G P VV Y
Sbjct: 245 QVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAY 304
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
TLI S KC EA+ V MEA+ C+ Y ++I + + A++YF K
Sbjct: 305 GTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKA 364
Query: 434 AGF 436
+GF
Sbjct: 365 SGF 367
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 12/189 (6%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD-----KYMLVMTLLDELGQ 327
F K G A K+ + G M P +Y LI LG KY EL +
Sbjct: 311 FCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYF-------ELSK 363
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
+ C A++ R KF + +G P Y ++ + +K
Sbjct: 364 ASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIE 423
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EA V M C L Y +++ +F + + A++ + ++KE G P ++ +I
Sbjct: 424 EAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLI 483
Query: 448 RIFMASGRL 456
RL
Sbjct: 484 NGLCFENRL 492
>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 794
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 12/293 (4%)
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENF 257
+ S + L +RAL+ + K H PD S + VL +H ++++ K+ +
Sbjct: 103 AFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDE 162
Query: 258 VSLASKGVLEAT----AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKN 311
+ + V T KG K G ++ WKL + K GR P+I Y LI K
Sbjct: 163 MVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKL--IEKRWGRGCMPNIVFYNTLIDGYCKK 220
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
D L EL + L + + AI+ + KF VV+ L + G D ++
Sbjct: 221 GDTER-ANVLFKELKMKGFLP-TVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIH 278
Query: 372 MYTTLIHSRLSEKKCR-EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
+Y +I ++ + CR EA V M S C D+ Y ++I + ++ +A + +
Sbjct: 279 IYNNIIDAQF-KHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQ 337
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ G P Y +I + G + D+ + G K D T L+
Sbjct: 338 AIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIH 390
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 10/202 (4%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDE 324
A G + G + +A + + G + D +IY L+ L G+ P +L+ +LD+
Sbjct: 387 ALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQ 446
Query: 325 LGQRDDLNLSQQDCTAIMKVG-IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
D TA + G IR F + LF G DP VV Y +I
Sbjct: 447 NVAPDAF------ITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKF 500
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
++AL M D Y +I ++ +ND+ A+R F + + P Y
Sbjct: 501 GMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTY 560
Query: 444 RDMIRIFMASGRLAKCRDVCKE 465
+I F SG + + K+
Sbjct: 561 TLLINGFCLSGDINRAEKTFKQ 582
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
K K+ LV +L+ L ++ N S+ D ++ +L F E + + G P
Sbjct: 114 KQLKKWNLVSEILEWLRYQNWWNFSEMDFLMLITAYGKLGNFNGAERVLSVLSKMGSSPN 173
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
V+ YT L+ S KC A + M++S Y++++K FV + A F
Sbjct: 174 VISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFE 233
Query: 430 KL---KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
L K++ P +Y MI ++ +G K R V + M G + + TV
Sbjct: 234 TLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVF--SSMVGKGVPQSTVT 284
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F +G PT Y L+ + +A TV +M DL +Y ++ +
Sbjct: 335 SVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAY 394
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
V +D+ A ++F ++K GF P Y MI+ + + + K +V ++ ++G K ++
Sbjct: 395 VNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQ 454
Query: 476 QTVVELL 482
+ ++
Sbjct: 455 TILTTIM 461
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 129/339 (38%), Gaps = 63/339 (18%)
Query: 170 LARDIKGLDSHKDVAEVLDK-CGRFLRKGSLSFTVRELGHMNL---PERALQTFCWAQKQ 225
+A+ + LD ++ LD C +F K S +F L + L PE A++ F WA KQ
Sbjct: 82 VAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQ 141
Query: 226 PHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL--EATAKGFVKG-GNLKLA 282
S +E+L +L V +L F L +G+L E+ A +K GNL L
Sbjct: 142 KKYVHKIECHVSLIELLTFSADL-VKIRLV-FFELKDRGLLMTESAANSLIKSFGNLGLV 199
Query: 283 WKLLMV---AKDGGRMLDPSIYAKLILELG-------KNPDKYMLVMTLLDELGQRDDLN 332
+LL V K+ G +DPS+Y L G ++ +K VM + N
Sbjct: 200 EELLWVWRRMKENG--IDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYN 257
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE--------- 383
+ + K+ ++KF +E P + Y TLI + SE
Sbjct: 258 IMIKGYCKAGKLQKAMEKFRDME-------MKNVKPDKITYMTLIQACYSERDFDTCLSL 310
Query: 384 --------------------------KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
+KC EA V M C ++ Y +I +
Sbjct: 311 YLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSK 370
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ A+R F ++K GF P Y ++ SGRL
Sbjct: 371 NGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 409
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 12/199 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G L +L ++ G ++ YA LI LGK + L +E+ ++
Sbjct: 402 GLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGK-AGRIEDAENLFEEMSEKG-- 458
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
+D + L K G ++ +LF G D TV +T LI E K E
Sbjct: 459 --CARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEE 516
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A+ M + ++R + ++RA + L G P + DMI
Sbjct: 517 AIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE-TAFEDMIN 575
Query: 449 IFMASGRLAKCRDVCKEAE 467
+ R+ ++ CK A+
Sbjct: 576 TLCKAQRI---KEACKLAD 591
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 10/225 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
G K G + A++L D ++ + +Y LI + G+ D + + ++ G
Sbjct: 486 GLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHR-GCS 544
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
DL L + K G + G +LF G P V+ Y+ LIH + RE
Sbjct: 545 PDLRLLNAYMDCVFKAG----ETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARE 600
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ + M+ C+ D AY I F +++A + ++K G PT Y +I
Sbjct: 601 TYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVID 660
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G +L+ V+ I+ ++G I
Sbjct: 661 GLAKIDRLDEAYMLFEEAKSNGLELN--VVIYSSLIDGFGKVGRI 703
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLP 406
+Q+ ++ +LFH G + +V ++TT+I E + AL+++ M+ SNCL D+
Sbjct: 211 VQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMK-SNCLHADIV 269
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y V I F + A ++F ++K G P Y MI + RL + ++ ++
Sbjct: 270 LYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQM 329
Query: 467 E 467
E
Sbjct: 330 E 330
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G + +AWK K G + D Y +I L K ++ + + +++ Q ++
Sbjct: 278 FGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKG-NRLDEAVEIFEQMEQNRNVP 336
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
+ T IM G KF SL G P+V+ Y ++ + + EAL
Sbjct: 337 CAYAYNTMIMGYG-SAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRT 395
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
M+ + +L Y V+I + ++ A + +KEAG P
Sbjct: 396 FEEMK-KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPN 441
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 39/318 (12%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
L I L S++ VA++LD + F V+ +G + +RAL+ F W +
Sbjct: 130 LTDKILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESW-QRALEVFEWLNLRHWHS 188
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVA 289
P+ R++A+ + VL R N SLA +E + G+ + +M
Sbjct: 189 PNARMVAAILGVLGRW----------NQESLA----VEIFTRAEPTVGDRVQVYNAMM-- 232
Query: 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGI 346
+Y++ K+ L+D + QR DL A +K G
Sbjct: 233 ---------GVYSR--------SGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGG 275
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
V L +SG P + Y TL+ + + A+ V +MEA C DL
Sbjct: 276 LTPNLAV--ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLW 333
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I ++ + A R F +L+ GF P Y ++ F K ++V ++
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 467 EMAGFKLDKQTVVELLQI 484
+ GF D+ T ++ +
Sbjct: 394 QKMGFGKDEMTYNTIIHM 411
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V+ ++ +G PT+ +Y +I K+ R+A +V ME +N +L + ++K
Sbjct: 876 VKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLK 935
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++ A+ D + ++ + ++KE G P Y +I ++ CRD
Sbjct: 936 MYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY--------CRD 975
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 7/217 (3%)
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS-IYAKLILELGKNP--DKYML 317
AS+ V ++ + K G + A +++ A+ G S +Y +I GK K
Sbjct: 714 ASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAES 773
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
V+ L + G+ DL +A + G + ++F+ G PTV L+
Sbjct: 774 VVGNLRQSGRTPDLKTWNSLMSAYAQCGC----YERARAIFNTMMRDGPSPTVESINILL 829
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
H+ + + E VV ++ + +++ F +I + +S +K AG+
Sbjct: 830 HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL 889
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
PT +YR MI + R+ + E E A FK++
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
MYT +I + +K ++A +VV N+ S DL + ++ + RA F+ +
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
G PT + ++ GRL + V +E + GFK+ K ++ LL ++ +R G
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSI--LLMLDAFARAG 871
Query: 492 TI 493
I
Sbjct: 872 NI 873
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 142/357 (39%), Gaps = 29/357 (8%)
Query: 153 RASICKQVYKNPSFLI----------SLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFT 202
RA V NPS ++ +L + L +A LD L S
Sbjct: 59 RAKAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLV 118
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLAS 262
+E +R+L+ F + Q+Q P++ + + +L R L+ ++ F +AS
Sbjct: 119 FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI--FDEMAS 176
Query: 263 KGVLE------ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDK 314
+GV+ A + + G + + +LL K + P+I Y +I +
Sbjct: 177 QGVIRSVFSYTALINAYGRNGQYETSLELLERMKR--ERVSPNILTYNTVINACARGDLD 234
Query: 315 YMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
+ ++ L E+ G + DL +A G+ + E +F G P +
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE----AEMVFKTMIEGGIVPEIT 290
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y+ ++ + K + ++ ME+ L D+ +Y V+I+ L I A+ F ++
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+ AG P Y ++ ++ GR R++ + + + + D T L+++ E
Sbjct: 351 QAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEG 407
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 39/318 (12%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
L I L S++ VA++LD + F V+ +G + +RAL+ F W +
Sbjct: 130 LTDKILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESW-QRALEVFEWLNLRHWHS 188
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVA 289
P+ R++A+ + VL R N SLA +E + G+ + +M
Sbjct: 189 PNARMVAAILGVLGRW----------NQESLA----VEIFTRAEPTVGDRVQVYNAMM-- 232
Query: 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGI 346
+Y++ K+ L+D + QR DL A +K G
Sbjct: 233 ---------GVYSR--------SGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGG 275
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
V L +SG P + Y TL+ + + A+ V +MEA C DL
Sbjct: 276 LTPNLAV--ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLW 333
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I ++ + A R F +L+ GF P Y ++ F K ++V ++
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 467 EMAGFKLDKQTVVELLQI 484
+ GF D+ T ++ +
Sbjct: 394 QKMGFGKDEMTYNTIIHM 411
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V+ ++ +G PT+ +Y +I K+ R+A +V ME +N +L + ++K
Sbjct: 876 VKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLK 935
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++ A+ D + ++ + ++KE G P Y +I ++ CRD
Sbjct: 936 MYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY--------CRD 975
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 7/217 (3%)
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS-IYAKLILELGKNP--DKYML 317
AS+ V ++ + K G + A +++ A+ G S +Y +I GK K
Sbjct: 714 ASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAES 773
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
V+ L + G+ DL +A + G + ++F+ G PTV L+
Sbjct: 774 VVGNLRQSGRTPDLKTWNSLMSAYAQCGC----YERARAIFNTMMRDGPSPTVESINILL 829
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
H+ + + E VV ++ + +++ F +I + +S +K AG+
Sbjct: 830 HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL 889
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
PT +YR MI + R+ + E E A FK++
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
MYT +I + +K ++A +VV N+ S DL + ++ + RA F+ +
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
G PT + ++ GRL + V +E + GFK+ K ++ LL ++ +R G
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSI--LLMLDAFARAG 871
Query: 492 TI 493
I
Sbjct: 872 NI 873
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 2/161 (1%)
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKV-GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTL 376
+ +LD + D + CT ++ V RL++F + W +G P VV Y+TL
Sbjct: 201 ALAVLDAMAA-DGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTL 259
Query: 377 IHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
I S + EAL V+ M C + Y ++ + I A R + + +GF
Sbjct: 260 ISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGF 319
Query: 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
P+ Y ++ G + + +E+ G+ D T
Sbjct: 320 APSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVIT 360
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 8/215 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L L EL +++
Sbjct: 415 GFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK-AKRYDLACELFQEL--KENC 471
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
S A+M L K G ++ +LF + G P V Y L+ E
Sbjct: 472 GSSSARVYAVMIK--HLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDE 529
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
ALT + M+ CL D+ +Y +++ RA+ + +K + P Y ++
Sbjct: 530 ALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLS 589
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + ++ KE GF+ D T +L+
Sbjct: 590 ALSHAGMFEEAAELMKEMNALGFEYDLITYSSILE 624
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 19/284 (6%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS +R LG+ + +A+ F + K P + S + +L + + +L N
Sbjct: 162 LSQVIRMLGNAKMIGKAITIF-YQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYN-- 218
Query: 259 SLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
++++G A F K G A +LL K+ G IY +I+ L
Sbjct: 219 EMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYT-MIISLFFK 277
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---P 368
D ++L +E+ + D ++ L K G ++ +H++ R+ P
Sbjct: 278 LDNVHGALSLFEEM----RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKP 333
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRY 427
V+ +I+ + + L + M S+C+ ++ Y +IK LF + + +S +
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F ++K +G P+ Y +I F + R+ K + +E + GF
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF 437
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 11/180 (6%)
Query: 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNL 333
G N+K+ + AK D S Y LI LEL ++Y + ++ E+ + +
Sbjct: 102 GVNVKMQF-FRWAAKKRNYQHDTSTYMALIHCLEL---VEQYGEMWKMIQEMVRSPICVV 157
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ + + ++++ + G ++F+ PT Y ++I + E + E + +
Sbjct: 158 TPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQ-YEKVHEL 216
Query: 394 WNMEASN---CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+N E SN C D Y +I F L AIR +++KE G PT IY +I +F
Sbjct: 217 YN-EMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLF 275
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 142/357 (39%), Gaps = 29/357 (8%)
Query: 153 RASICKQVYKNPSFLI----------SLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFT 202
RA V NPS ++ +L + L +A LD L S
Sbjct: 59 RAKAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLV 118
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLAS 262
+E +R+L+ F + Q+Q P++ + + +L R L+ ++ F +AS
Sbjct: 119 FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI--FDEMAS 176
Query: 263 KGVLE------ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDK 314
+GV+ A + + G + + +LL K + P+I Y +I +
Sbjct: 177 QGVIRSVFSYTALINAYGRNGQYETSLELLERMKR--ERVSPNILTYNTVINACARGDLD 234
Query: 315 YMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
+ ++ L E+ G + DL +A G+ + E +F G P +
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE----AEMVFKTMIEGGIVPEIT 290
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y+ ++ + K + ++ ME+ L D+ +Y V+I+ L I A+ F ++
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+ AG P Y ++ ++ GR R++ + + + + D T L+++ E
Sbjct: 351 QAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEG 407
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 8/215 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L L EL +++
Sbjct: 415 GFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK-AKRYDLACELFQEL--KENC 471
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
S A+M L K G ++ +LF + G P V Y L+ E
Sbjct: 472 GSSSARVYAVMIK--HLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDE 529
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
ALT + M+ CL D+ +Y +++ RA+ + +K + P Y ++
Sbjct: 530 ALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLS 589
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + ++ KE GF+ D T +L+
Sbjct: 590 ALSHAGMFEEAAELMKEMNALGFEYDLITYSSILE 624
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 19/284 (6%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS +R LG+ + +A+ F + K P + S + +L + + +L N
Sbjct: 162 LSQVIRMLGNAKMIGKAITIF-YQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYN-- 218
Query: 259 SLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
++++G A F K G A +LL K+ G IY +I+ L
Sbjct: 219 EMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYT-MIISLFFK 277
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---P 368
D ++L +E+ + D ++ L K G ++ +H++ R+ P
Sbjct: 278 LDNVHGALSLFEEM----RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKP 333
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRY 427
V+ +I+ + + L + M S+C+ ++ Y +IK LF + + +S +
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F ++K +G P+ Y +I F + R+ K + +E + GF
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF 437
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 11/180 (6%)
Query: 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNL 333
G N+K+ + AK D S Y LI LEL ++Y + ++ E+ + +
Sbjct: 102 GVNVKMQF-FRWAAKKRNYQHDTSTYMALIHCLEL---VEQYGEMWKMIQEMVRSPICVV 157
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ + + ++++ + G ++F+ PT Y ++I + E + E + +
Sbjct: 158 TPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQ-YEKVHEL 216
Query: 394 WNMEASN---CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+N E SN C D Y +I F L AIR +++KE G PT IY +I +F
Sbjct: 217 YN-EMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLF 275
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 129/339 (38%), Gaps = 63/339 (18%)
Query: 170 LARDIKGLDSHKDVAEVLDK-CGRFLRKGSLSFTVRELGHMNL---PERALQTFCWAQKQ 225
+A+ + LD ++ LD C +F K S +F L + L PE A++ F WA KQ
Sbjct: 84 VAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVAVRFFFWAGKQ 143
Query: 226 PHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL--EATAKGFVKG-GNLKLA 282
S +E+L +L V +L F L +G+L E+ A +K GNL L
Sbjct: 144 KKYVHKIECHVSLIELLTFSADL-VKIRLV-FFELKDRGLLMTESAANSLIKSFGNLGLV 201
Query: 283 WKLLMV---AKDGGRMLDPSIYAKLILELG-------KNPDKYMLVMTLLDELGQRDDLN 332
+LL V K+ G +DPS+Y L G ++ +K VM + N
Sbjct: 202 EELLWVWRRMKENG--IDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYN 259
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE--------- 383
+ + K+ ++KF +E P + Y TLI + SE
Sbjct: 260 IMIKGYCKAGKLQKAMEKFRDME-------MKNVKPDKITYMTLIQACYSERDFDTCLSL 312
Query: 384 --------------------------KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
+KC EA V M C ++ Y +I +
Sbjct: 313 YLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSK 372
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ A+R F ++K GF P Y ++ SGRL
Sbjct: 373 NGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 411
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 12/199 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G L +L ++ G ++ YA LI LGK + L +E+ ++
Sbjct: 404 GLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGK-AGRIEDAENLFEEMSEKG-- 460
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
+D + L K G ++ +LF G D TV +T LI E K E
Sbjct: 461 --CARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEE 518
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A+ M + ++R + ++RA + L G P + DMI
Sbjct: 519 AIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE-TAFEDMIN 577
Query: 449 IFMASGRLAKCRDVCKEAE 467
+ R+ ++ CK A+
Sbjct: 578 TLCKAQRI---KEACKLAD 593
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 353 VVESLFHW--FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
V+E+L W G +P VV Y TLIH S K EA++V ME + C ++ Y
Sbjct: 335 VLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGA 394
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+I F D+ A ++K+ G P +Y M+ + S ++
Sbjct: 395 LIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQ 442
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 12/181 (6%)
Query: 302 AKLILEL---GKNPD--KYMLVMTLLDELGQRDD---LNLSQQDCTAIMKVGI----RLQ 349
KL++E+ G PD Y V++ + +LG+ ++ L++ Q ++ I R
Sbjct: 204 CKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREY 263
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V L G DP V+ Y+T+I S AL V M C ++ +
Sbjct: 264 KVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFT 323
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++K + + A+ ++++ E GF P Y +I + G++ + V + E
Sbjct: 324 SLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERN 383
Query: 470 G 470
G
Sbjct: 384 G 384
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P VV+YT++++ +A +++ M NC + + IK +
Sbjct: 418 NGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVEC 477
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
AI F ++++ G P Y +++ + R+ + ++ E E G +L+ T
Sbjct: 478 AINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVT 531
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%)
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
L C+ ++ + K E + H+G PT V+Y TLI+ + R A +
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M++ + D Y +I L +++A +++++G P+ + + +I +
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451
Query: 453 SGRLAKCRDVCKEAEMAGFKLD 474
+G+L KC V + + G K D
Sbjct: 452 AGQLEKCFTVLSDMQQKGIKSD 473
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+L+ E L SG DP+V + TLI + + + + TV+ +M+ D+
Sbjct: 416 KLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVI 475
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
++ V+K F I A+ + P +Y +I ++ SG
Sbjct: 476 SFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG 523
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 100/251 (39%), Gaps = 20/251 (7%)
Query: 218 TFCWAQ--KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGF-- 273
FC + K H+ PD + + L + L++ K E+ V K ++ + + F
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCK---LEMVTKAEDLVMEMEKSGVDPSVETFNT 444
Query: 274 -----VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328
G L+ + +L + G D + ++ KN K + +LD++ +
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN-GKIPEAVAILDDMIYK 503
Query: 329 D---DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
D + + A ++ G Q F +VE + +SG ++V Y L+ +
Sbjct: 504 DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKM----KNSGVSASIVTYNLLLKGLCRSSQ 559
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
EA +++ + D+ +Y +I D +A+ ++ + G PT Y
Sbjct: 560 IDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHT 619
Query: 446 MIRIFMASGRL 456
++ ++GR+
Sbjct: 620 LVSALASAGRV 630
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 16/246 (6%)
Query: 257 FVSLASKGVLEATAK------GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LE 307
F ++ +GV+ F K G ++ A KL + G L+ Y LI +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340
Query: 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD 367
G+ D + LLDE+ R + L+ T ++ + +K E + +G
Sbjct: 341 AGRLDD----AIVLLDEM-VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
++YTTLIH K +AL ++ M+ D+ Y +I+ ++ + A
Sbjct: 396 ANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSL 455
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
+K+ E+G P Y IY M+ SG++ + + ++ +GF+ + T L I+
Sbjct: 456 LTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL--IDGL 513
Query: 488 SRIGTI 493
+ G+I
Sbjct: 514 CKAGSI 519
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE--LGKNPDKYMLVMTLLDELGQRD 329
G K + A +L + + G + +Y LI + KN +K + +++ + G
Sbjct: 372 GLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLEL 431
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D++L A+++ + K +SL SG +P ++YTT++ + K EA
Sbjct: 432 DISLYG----ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEA 487
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ ++ + S ++ Y +I I AI +F+K+++ G P Y ++
Sbjct: 488 IAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDG 547
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+G L + + E G LDK LL
Sbjct: 548 LCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 95/266 (35%), Gaps = 13/266 (4%)
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLL 286
HL DRL A + VL+R L+ P + V L + L A G + + LL
Sbjct: 73 HLLARDRLYAHSRRVLSRLVALRRPHLAASLVDLLHRAAL---ALGPRRSALASVVDTLL 129
Query: 287 MVAKDGGRMLDPSIYAKLILELGKNPD----KYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
V D G + D + EL P+ ++L+ D G+ Q +
Sbjct: 130 SVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAPNVF 189
Query: 343 KVGIRLQ------KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
I + + SLF G P VV + +LI + E +V M
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
S C D+ Y +I F + A YF+ +K G + + F G +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELL 482
+ + + + G L++ T L+
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLI 335
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ H G V+YT L+ L + +A + M S DL Y I F
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
LN + A FS++ G P +Y +I + G L
Sbjct: 620 NLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNL 659
>gi|449441228|ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 107/268 (39%), Gaps = 16/268 (5%)
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENF 257
+ S+ ++ G +LP++AL+ F + P + L +E+L H P + F
Sbjct: 143 AFSYIIKIYGEADLPDKALKVF-YTMIDFGCTPSSKQLNRILEILVSHRNFIRP-AFDLF 200
Query: 258 VSLASKGVLEATA------KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
+ GVL T + F GN+ +A+ L + + D Y L+ L +
Sbjct: 201 KNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLCRK 260
Query: 312 PDKYMLVMTLLDELGQR---DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
V L D L + D L+ + ++ R +K L G +P
Sbjct: 261 NQVNGAVDLLEDMLNKGYIPDTLSYA-----TLLNSLCRKKKLREAYKLLCRMKVKGCNP 315
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
+ Y T+I E + +A ++ +M+++ CL +L +Y + A Y
Sbjct: 316 DIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYV 375
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ GF P + + +++ F + GR+
Sbjct: 376 EEMTLKGFYPHFSVIHALVKGFHSIGRI 403
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 8/209 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLL 322
V A G K G +++A KLL D G +DP++ Y+ +I L + + L L
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNG--VDPNVVSYSCIINSLCVSGN-VELAFALF 302
Query: 323 DELGQRD-DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
++ R D N+ T ++K K L+ G +P VV Y TLIH
Sbjct: 303 AQMFLRGCDANI--HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
S EAL V M+ S CL ++ Y ++I F D+ A ++++ G P
Sbjct: 361 SNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
Y M+ + + + + ++ + G
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEG 449
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 114/293 (38%), Gaps = 18/293 (6%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSL----SFTVRELGHMNLPERALQTFCWAQKQPH-L 228
I GL S+ + E L C + R G L ++++ G + + W + H
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKG--GNLKLAWKLL 286
P+ V+VL ++ L ++L T F+KG GN ++ W +
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475
Query: 287 MVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344
++ + G P+I Y +L+ L + +KY L E+ R+ Q + V
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFR-MNKYEEAFGLFQEIEARN----LQPNLVTYNTV 530
Query: 345 GIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ G++ F + G P + Y T+IH+ + K + A +V + +
Sbjct: 531 LYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590
Query: 402 LF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
D+ Y +I +I A+ + K G CP + + ++R F S
Sbjct: 591 WHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDS 643
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Query: 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358
S Y +I LG+ + M V +L ++ + D +N + I+ R+ +F
Sbjct: 75 STYRVMIERLGRECEMDM-VQYILQQM-KMDGINCCEDLFICIINGYKRVGSAEQALKMF 132
Query: 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
+ G PTV +Y L+ + LSE K + + NM+ + ++ Y +++K
Sbjct: 133 YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKN 192
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+ + A + F ++ G P Y M+ +G++ R++
Sbjct: 193 DRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 103/278 (37%), Gaps = 35/278 (12%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL-------ENFVSLASKGVLE 267
AL F WA+ Q + S +++L + + + + L +VSL + G
Sbjct: 154 ALGVFIWAKNQTGYVHKPEIYNSMIDILGKSRKFSLMWDLVQEMSGLNGYVSLVTMG--- 210
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
K V+ G A D R L+ L K+ + ++M +L G+
Sbjct: 211 KVMKRLVRDGKYNEAI-------DAFRGLEK-------FGLSKSTEAMNVLMDILARNGR 256
Query: 328 RDD---LNLSQQDCTA-------IMKVG-IRLQKFGVVESLFHWFTHSGRDPTVVMYTTL 376
+D + L + C I+ G + + FG G P VV YT
Sbjct: 257 VEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAF 316
Query: 377 IHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
I + +K R ++ M+ C DL Y V I+ I++A+ ++K GF
Sbjct: 317 IEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGF 376
Query: 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
Y +I SGRL ++ ++ E G D
Sbjct: 377 VLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRD 414
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 8/209 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLL 322
V A G K G +++A KLL D G +DP++ Y+ +I L + + L L
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNG--VDPNVVSYSCIINSLCVSGN-VELAFALF 302
Query: 323 DELGQRD-DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
++ R D N+ T ++K K L+ G +P VV Y TLIH
Sbjct: 303 AQMFLRGCDANI--HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
S EAL V M+ S CL ++ Y ++I F D+ A ++++ G P
Sbjct: 361 SNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
Y M+ + + + + ++ + G
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEG 449
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 114/293 (38%), Gaps = 18/293 (6%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSL----SFTVRELGHMNLPERALQTFCWAQKQPH-L 228
I GL S+ + E L C + R G L ++++ G + + W + H
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKG--GNLKLAWKLL 286
P+ V+VL ++ L ++L T F+KG GN ++ W +
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475
Query: 287 MVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344
++ + G P+I Y +L+ L + +KY L E+ R+ Q + V
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFR-MNKYEEAFGLFQEIEARN----LQPNLVTYNTV 530
Query: 345 GIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ G++ F + G P + Y T+IH+ + K + A +V + +
Sbjct: 531 LYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590
Query: 402 LF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
D+ Y +I +I A+ + K G CP + + ++R F S
Sbjct: 591 WHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDS 643
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Query: 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358
S Y +I LG+ + M V +L ++ + D +N + I+ R+ +F
Sbjct: 75 STYRVMIERLGRECEMDM-VQYILQQM-KMDGINCCEDLFICIINGYKRVGSAEQALKMF 132
Query: 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
+ G PTV +Y L+ + LSE K + + NM+ + ++ Y +++K
Sbjct: 133 YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKN 192
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+ + A + F ++ G P Y M+ +G++ R++
Sbjct: 193 DRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 15/302 (4%)
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQP-HLFPDDRLLASTVEVLARHHELKVPFKLEN 256
++S ++ L + + +L F WA++QP + +D A + L + + L +
Sbjct: 175 NMSHVIQALKIVTDTDASLSLFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFD 234
Query: 257 FV---SLASKGVLEATA-----KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-LE 307
+ S + GV A + K L++A+ +D G +D + Y LI L
Sbjct: 235 EMIRDSGDNNGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLF 294
Query: 308 LGKN-PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR 366
L K P K V ++ G D + + ++ K G + LF
Sbjct: 295 LNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSG----RLDAAFKLFQEMKEKNL 350
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
P+ +++ +L+ S + ++ V M+ Y +I+ FV + A+R
Sbjct: 351 RPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALR 410
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486
+ ++K+AGF P Y +Y ++ SG+L V + E AGF T LL++
Sbjct: 411 IWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHS 470
Query: 487 ES 488
S
Sbjct: 471 AS 472
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 44/242 (18%)
Query: 250 VPFK-LENFVSLASKGVL------EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
+P+K E + S+ + G L E K G L A+KL K+ + L PS
Sbjct: 299 LPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKE--KNLRPS--- 353
Query: 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362
+++ +L+D +G+ L+ S MKV + +Q FG+
Sbjct: 354 ------------FLVFASLVDSMGKAGRLDTS-------MKVYMEMQGFGL--------- 385
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
P+ MY +LI S + K AL + M+ + + Y +V++ +
Sbjct: 386 ----RPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLE 441
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A+ FS +++AGF PT Y ++ + ASG++ + AG + T LL
Sbjct: 442 TAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALL 501
Query: 483 QI 484
+
Sbjct: 502 TL 503
>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial [Vitis vinifera]
Length = 535
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V+ YT+++ + EK R+ +V+ ME C ++ Y +V+ +IS+A
Sbjct: 287 GFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKA 346
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ + K+K + P Y +I I +GRL RDV ++ G
Sbjct: 347 LEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQG 392
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T+I++ R + F V S+ + G P VV YT ++H+ K+ +AL V M+
Sbjct: 296 TSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKG 355
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
S+C+ D Y +I + + A F + + G P Y MI
Sbjct: 356 SSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMI 404
>gi|449446895|ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic-like [Cucumis sativus]
Length = 668
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 91/191 (47%), Gaps = 7/191 (3%)
Query: 297 DPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
+ S Y+ I +G+ NP K + V ++E+ ++ + + C +I+ +R KF
Sbjct: 136 NVSSYSSYIKFMGRGLNPLKALEVYNNIEEVSIKNSIFI----CNSILNCLVRNGKFDTS 191
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC-REALTVVWNMEASNCLFDLPAYRVVIK 413
LFH + G P V Y+T++ + K +A+ ++ ++ + D +Y +I
Sbjct: 192 VKLFHQMKNDGLCPDTVTYSTMLTGCIRVKHGYAKAMELLKELQDNGLCMDCVSYGTLIA 251
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ + N + A R+F++++ G P Y ++ + +G K ++ ++ ++ G
Sbjct: 252 ICASHNRLEDAERFFNQMRAEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVP 311
Query: 474 DKQTVVELLQI 484
+K + LL++
Sbjct: 312 NKVILTTLLKV 322
>gi|255576798|ref|XP_002529286.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531275|gb|EEF33118.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 7/192 (3%)
Query: 296 LDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
+ S Y + +GK NP K + + + + ++++ + C +++ +R KF +
Sbjct: 144 ISVSSYTSYMKFMGKSLNPAKALEIYNSIADESVKNNVFI----CNSVLSCLVRSGKFDI 199
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC-REALTVVWNMEASNCLFDLPAYRVVI 412
LFH +G P + Y+TL+ + K + L V ++ + D Y ++
Sbjct: 200 SLKLFHKMKQNGLTPDTITYSTLLSGCIKAKDGYSKTLDFVQELKYNGLQMDTVIYGTIL 259
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ + N A YFS++K G P Y ++ + +SG K ++ ++ + G
Sbjct: 260 AVCASHNRCEEAESYFSQMKNEGHLPNVFHYSSLLNAYASSGNYKKAEELVQDMKSLGLV 319
Query: 473 LDKQTVVELLQI 484
+K LL++
Sbjct: 320 PNKVIWTTLLKV 331
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/300 (18%), Positives = 107/300 (35%), Gaps = 46/300 (15%)
Query: 182 DVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEV 241
D+ L + G L+ L+ +R LG + + + F W Q+ + S ++
Sbjct: 98 DLDSALRRLGAILKAQDLNVILRNLGKQSRWQDLSKLFDWMQQHSKISVSS--YTSYMKF 155
Query: 242 LARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRM 295
+ + L LE + S+A + V + V+ G ++ KL K G
Sbjct: 156 MGK--SLNPAKALEIYNSIADESVKNNVFICNSVLSCLVRSGKFDISLKLFHKMKQNGLT 213
Query: 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355
D Y+ L+ K D Y + + EL
Sbjct: 214 PDTITYSTLLSGCIKAKDGYSKTLDFVQEL------------------------------ 243
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++G V+Y T++ S +C EA + M+ L ++ Y ++ +
Sbjct: 244 ------KYNGLQMDTVIYGTILAVCASHNRCEEAESYFSQMKNEGHLPNVFHYSSLLNAY 297
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ + +A +K G P I+ ++++++ G K + + E E G+ D+
Sbjct: 298 ASSGNYKKAEELVQDMKSLGLVPNKVIWTTLLKVYVRGGLFEKSQQLLLELETLGYAEDE 357
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 16/246 (6%)
Query: 257 FVSLASKGVLEATAK------GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LE 307
F ++ +GV+ F K G ++ A KL + G L+ Y LI +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340
Query: 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD 367
G+ D + LLDE+ R + L+ T ++ + +K E + +G
Sbjct: 341 AGRLDD----AIVLLDEM-VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR 395
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
++YTTLIH K +AL ++ M+ D+ Y +I+ ++ + A
Sbjct: 396 ANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSL 455
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
+K+ E+G P Y IY M+ SG++ + + ++ +GF+ + T L I+
Sbjct: 456 LTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL--IDGL 513
Query: 488 SRIGTI 493
+ G+I
Sbjct: 514 CKAGSI 519
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE--LGKNPDKYMLVMTLLDELGQRD 329
G K + A +L + + G + +Y LI + KN +K + +++ + G
Sbjct: 372 GLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLEL 431
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D++L A+++ + K +SL SG +P ++YTT++ + K EA
Sbjct: 432 DISLYG----ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEA 487
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ ++ + S ++ Y +I I AI +F+K+++ G P Y ++
Sbjct: 488 IAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDG 547
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+G L + + E G LDK LL
Sbjct: 548 LCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 95/267 (35%), Gaps = 13/267 (4%)
Query: 226 PHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKL 285
HL DRL A + VL+R L+ P + V L + L A G + + L
Sbjct: 72 AHLLARDRLYAHSRRVLSRLVALRRPHLAASLVDLLHRAAL---ALGPRRSALASVVDTL 128
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNPD----KYMLVMTLLDELGQRDDLNLSQQDCTAI 341
L V D G + D + EL P+ ++L+ D G+ Q +
Sbjct: 129 LSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPAPNV 188
Query: 342 MKVGIRLQ------KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
I + + SLF G P VV + +LI + E +V
Sbjct: 189 FTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
M S C D+ Y +I F + A YF+ +K G + + F G
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308
Query: 456 LAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ + + + + G L++ T L+
Sbjct: 309 VREAMKLFAQMRVRGMALNEFTYTCLI 335
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ H G V+YT L+ L + +A + M S DL Y I F
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
LN + A FS++ G P +Y +I + G L
Sbjct: 620 NLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNL 659
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 113/270 (41%), Gaps = 7/270 (2%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
+ R + H+ +A VLD G + ++ ++ L + + AL F WA++Q
Sbjct: 95 VCRVVSAQPEHR-IAPVLDALGVTVSPQLVAEVLKNLSNAGI--LALAFFRWAERQQGFR 151
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFV---SLASKGVLEATAKGFVKGGNLKLAWKLL 286
+ +E L + + ++ + L + S SK + + + + +K A +
Sbjct: 152 YSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETF 211
Query: 287 MVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI 346
G D S Y LI L K+ + + E+ ++ + T +M+
Sbjct: 212 EKMSSFGLKTDLSDYNWLIDILSKS-KQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWG 270
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ ++++++ +G P VV Y LI + KC EA+ V ME S C+
Sbjct: 271 HEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPH 330
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
Y ++I ++ + A++YF KE+GF
Sbjct: 331 VYCMLINGLGSMERLDEALKYFQLSKESGF 360
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 49/238 (20%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE------L 325
F K G A K+ ++ G M P +Y LI LG M LDE L
Sbjct: 303 AFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGS--------MERLDEALKYFQL 354
Query: 326 GQRDDLNLSQQDCTAIMKVGIR-------------LQKFGV------------------- 353
+ + C A++ R ++K G+
Sbjct: 355 SKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEK 414
Query: 354 VESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
+E ++ F RD P + YT ++ S ++ AL V M+ L + +
Sbjct: 415 IEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSA 474
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I N + A YF ++ + G P ++ ++ + GR+ ++V + EM
Sbjct: 475 LINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEM 532
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 113/270 (41%), Gaps = 7/270 (2%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
+ R + H+ +A VLD G + ++ ++ L + + AL F WA++Q
Sbjct: 95 VCRVVSAQPEHR-IAPVLDALGVTVSPQLVAEVLKNLSNAGI--LALAFFRWAERQQGFR 151
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFV---SLASKGVLEATAKGFVKGGNLKLAWKLL 286
+ +E L + + ++ + L + S SK + + + + +K A +
Sbjct: 152 YSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETF 211
Query: 287 MVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI 346
G D S Y LI L K+ + + E+ ++ + T +M+
Sbjct: 212 EKMSSFGLKTDLSDYNWLIDILSKS-KQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWG 270
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ ++++++ +G P VV Y LI + KC EA+ V ME S C+
Sbjct: 271 HEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPH 330
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
Y ++I ++ + A++YF KE+GF
Sbjct: 331 VYCMLINGLGSMERLDEALKYFQLSKESGF 360
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 49/238 (20%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE------L 325
F K G A K+ ++ G M P +Y LI LG M LDE L
Sbjct: 303 AFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGS--------MERLDEALKYFQL 354
Query: 326 GQRDDLNLSQQDCTAIMKVGIR-------------LQKFGV------------------- 353
+ + C A++ R ++K G+
Sbjct: 355 SKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEK 414
Query: 354 VESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
+E ++ F RD P + YT ++ S ++ AL V M+ L + +
Sbjct: 415 IEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSA 474
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I N + A YF ++ + G P ++ ++ + GR+ ++V + EM
Sbjct: 475 LINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEM 532
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 4/213 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L EL R++
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGK-AKRYEAANELFQEL--RENC 471
Query: 332 NLSQQDCTAIM-KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
S A+M K + + LF+ G +P V Y L+ + EA
Sbjct: 472 GYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAH 531
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+++ ME + C DL ++ +++ F AI F+++K + P Y ++
Sbjct: 532 SLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCL 591
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + KE GF+ D T +L+
Sbjct: 592 SRAGMFEEAAKLMKEMNSKGFEYDLITYSSILE 624
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 17/184 (9%)
Query: 315 YMLVMTLLDELGQ------------RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362
YM ++ LDE G R + D + I+KV + + S+F+
Sbjct: 127 YMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIK 186
Query: 363 HSGRDPTVVMYTTLIHSRLSE---KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
PT Y ++I + E +K E + N +CL D Y +I F L
Sbjct: 187 GRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCN--EGDCLPDTVTYSALIAAFGKLG 244
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
AI F ++KE G PT IY ++ I+ GR+ K + +E + G L T
Sbjct: 245 RDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYT 304
Query: 480 ELLQ 483
EL++
Sbjct: 305 ELIK 308
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 350 KFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G VE + F + G P VV+ LI+ + +A+ + ME+ C ++
Sbjct: 312 KAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVV 371
Query: 407 AYRVVIK-LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y VIK LF + S A ++ K+KE G P+ Y +I F + R+ K + +E
Sbjct: 372 TYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 431
Query: 466 AEMAGF 471
+ GF
Sbjct: 432 MDEKGF 437
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SLF +G PT +YTT++ + +AL +V M+ C + Y +IK
Sbjct: 251 SLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGV 310
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
+ A F + + G P + ++I + +GRLA + +E E
Sbjct: 311 GKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEME 362
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%)
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
L C+ ++ + K E + H+G PT V+Y TLI+ + R A +
Sbjct: 154 LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 213
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M++ + D Y +I L +++A +++++G P+ + + +I +
Sbjct: 214 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 273
Query: 453 SGRLAKCRDVCKEAEMAGFKLD 474
+G+L KC V + + G K D
Sbjct: 274 AGQLEKCFTVLSDMQQKGIKSD 295
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+L+ E L SG DP+V + TLI + + + + TV+ +M+ D+
Sbjct: 238 KLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVI 297
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
++ V+K F I A+ + P +Y +I ++ SG
Sbjct: 298 SFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG 345
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 100/250 (40%), Gaps = 20/250 (8%)
Query: 219 FCWAQ--KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGF--- 273
FC + K H+ PD + + L + L++ K E+ V K ++ + + F
Sbjct: 211 FCIFEQMKSRHIRPDHITYNALINGLCK---LEMVTKAEDLVMEMEKSGVDPSVETFNTL 267
Query: 274 ----VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD 329
G L+ + +L + G D + ++ KN K + +LD++ +D
Sbjct: 268 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNG-KIPEAVAILDDMIYKD 326
Query: 330 ---DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ + A ++ G Q F +VE + +SG ++V Y L+ +
Sbjct: 327 VAPNAQVYNSIIDAYIESGDTEQAFLLVEKM----KNSGVSASIVTYNLLLKGLCRSSQI 382
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EA +++ + D+ +Y +I D +A+ ++ + G PT Y +
Sbjct: 383 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442
Query: 447 IRIFMASGRL 456
+ ++GR+
Sbjct: 443 VSALASAGRV 452
>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g54980, mitochondrial; Flags: Precursor
gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 851
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V+ YT+L++ + +AL + M+ D+PAY +I F +++
Sbjct: 613 NGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMES 672
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A FS+L E G P+ IY +I F G + D+ K+ G + D T L+
Sbjct: 673 ASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLI 731
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 4/213 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L EL R++
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGK-AKRYEAANELFQEL--RENC 471
Query: 332 NLSQQDCTAIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
S A+M + + + LF+ G +P V Y L+ + EA
Sbjct: 472 GYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAH 531
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+++ ME + C DL ++ +++ F AI F+++K + P Y ++
Sbjct: 532 SLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCL 591
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + KE GF+ D T +L+
Sbjct: 592 SRAGMFEEAAKLMKEMNSKGFEYDLITYSSILE 624
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 17/184 (9%)
Query: 315 YMLVMTLLDELGQ------------RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362
YM ++ LDE G R + D + I+KV + + S+F+
Sbjct: 127 YMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIK 186
Query: 363 HSGRDPTVVMYTTLIHSRLSE---KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
PT Y ++I + E +K E + N +CL D Y +I F L
Sbjct: 187 GRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCN--EGDCLPDTVTYSALIAAFGKLG 244
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
AI F ++KE G PT IY ++ I+ GR+ K + +E + G L T
Sbjct: 245 RDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYT 304
Query: 480 ELLQ 483
EL++
Sbjct: 305 ELIK 308
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 350 KFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G VE + F + G P VV+ LI+ + +A+ + ME+ C ++
Sbjct: 312 KAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVV 371
Query: 407 AYRVVIK-LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y VIK LF + S A ++ K+KE G P+ Y +I F + R+ K + +E
Sbjct: 372 TYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 431
Query: 466 AEMAGF 471
+ GF
Sbjct: 432 MDEKGF 437
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SLF +G PT +YTT++ + +AL +V M+ C + Y +IK
Sbjct: 251 SLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGV 310
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
+ A F + + G P + ++I + +GRLA + +E E
Sbjct: 311 GKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEME 362
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 44/242 (18%)
Query: 250 VPFK-LENFVSLASKGVL------EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
+P+K E + S+ + G L E K G L A+KL K+ + L PS
Sbjct: 212 LPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKE--KNLRPS--- 266
Query: 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362
+++ +L+D +G+ L+ S MKV + +Q FG+
Sbjct: 267 ------------FLVFASLVDSMGKAGRLDTS-------MKVYMEMQGFGL--------- 298
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
P+ MY +LI S + K AL + M+ + + Y +V++ +
Sbjct: 299 ----RPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLE 354
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A+ FS +++AGF PT Y ++ + ASG++ + AG + T LL
Sbjct: 355 TAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALL 414
Query: 483 QI 484
+
Sbjct: 415 TL 416
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 6/222 (2%)
Query: 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-LELGKN-PDKYMLVMTLLDELG 326
+ K L++A+ +D G +D + Y LI L L K P K V ++ G
Sbjct: 168 VVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAG 227
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
D + + ++ K G + LF P+ +++ +L+ S +
Sbjct: 228 CLLDGSTYELMIPSLAKSG----RLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRL 283
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
++ V M+ Y +I+ FV + A+R + ++K+AGF P Y +Y +
Sbjct: 284 DTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMV 343
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+ SG+L V + E AGF T LL++ S
Sbjct: 344 VESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSAS 385
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 2/156 (1%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
C +++ + +K V F SG Y +LI L++ +A V +ME
Sbjct: 165 CNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESME 224
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
A+ CL D Y ++I + A + F ++KE P++ ++ ++ +GRL
Sbjct: 225 AAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLD 284
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
V EM GF L + + IE + G +
Sbjct: 285 TSMKVY--MEMQGFGLRPSATMYVSLIESFVKAGKL 318
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 136/336 (40%), Gaps = 18/336 (5%)
Query: 148 CLASSRASICKQVYKNPSFLISLARDIKGLDSHK-DVAEVLDKCGRFLRKGSLSFTVREL 206
C + S CK + LI+L + KGL +V E ++ G L + + L
Sbjct: 184 CFKKVQDSGCKIDTATYNSLITLFLN-KGLPYKAFEVYESMEAAGCLLDGSTYELMIPSL 242
Query: 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL----KVPFKLENFVSLAS 262
+ A + F K+ +L P + AS V+ + + L KV +++ F S
Sbjct: 243 AKSGRLDAAFKLF-QEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPS 301
Query: 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLL 322
+ + + FVK G L+ A ++ K G + +Y +++E K M++
Sbjct: 302 ATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYT-MVVESHAKSGKLETAMSVF 360
Query: 323 DELGQRDDL-NLSQQDCTAIMKVGIRLQKFGVVES---LFHWFTHSGRDPTVVMYTTLIH 378
++ + L S C M G V+S L++ T++G P + YT L+
Sbjct: 361 SDMEKAGFLPTPSTYSCLLEMH-----SASGQVDSAMKLYNSMTNAGLRPGLSTYTALLT 415
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
++K A V+ M+A D+ A V++ +++ + A+R+ + +G
Sbjct: 416 LLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLM-VYIKDGSVDLALRWLRFMGSSGIRT 474
Query: 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
I R + M +G + + + + K+D
Sbjct: 475 NNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVD 510
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
GF K GN + A AK + L+ SIY K+I + N ++ ++ ++E G
Sbjct: 389 GFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDA 448
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + V +K G++ +F G PTVV Y LI+ K +A
Sbjct: 449 PIAIYHTMMDGYTMVAD--EKKGLI--VFKRLKECGFTPTVVTYGCLINLYTKVGKISKA 504
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L V M+ +L Y ++I FV L D + A F + + G P +Y ++I
Sbjct: 505 LEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAA 564
Query: 450 FMASGRLAKCRDVCKEAE 467
F G + + KE +
Sbjct: 565 FCGMGNMDRAIQTVKEMQ 582
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 348 LQKFGVVESLFHWFTHSGRDPTVV---MYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
K G E+ HWF + R + +Y +I++ A +V ME
Sbjct: 390 FSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAP 449
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ Y ++ + + D + + F +LKE GF PT Y +I ++ G+++K +V +
Sbjct: 450 IAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSR 509
Query: 465 EAEMAGFKLDKQT 477
+ G K + +T
Sbjct: 510 VMKEEGVKHNLKT 522
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PTV + LI+ + +++ +A+ ++ M + + Y +++ +
Sbjct: 612 VFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 671
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ D +A YF++L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 672 SVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTK--EMSARNIPRN 729
Query: 477 TVVELLQIEKESRIGTI 493
+ V + I+ +R G +
Sbjct: 730 SFVYNILIDGWARRGDV 746
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363
L ++GK K + V ++ E G + +L +K+ F V E +
Sbjct: 494 LYTKVGK-ISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VK 548
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV---VIKLFVALND 420
G P V++Y +I + A+ V M+ L P R +I F D
Sbjct: 549 EGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQK---LRHRPTTRTFMPIINGFAKSGD 605
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ R++ F ++ G PT + +I + ++ K ++ E +AG ++ T +
Sbjct: 606 MRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 665
Query: 481 LLQ 483
++Q
Sbjct: 666 IMQ 668
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 115/288 (39%), Gaps = 6/288 (2%)
Query: 200 SFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST-VEVLARHHELKVPFKLENFV 258
++ +RELG+ N ++A+ + +A K+ + LAS + L R+ ++ + ++
Sbjct: 200 TYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETA 259
Query: 259 SLASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK 314
G A + + G + A + K+ G + Y +I GK +
Sbjct: 260 FAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGME 319
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
+ V DE+ QR+ + + +++ V R + +LF T+ + V Y
Sbjct: 320 FKQVAKFFDEM-QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
TL+ + + A ++ M + ++ +Y VI F A+ F +++
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
G Y ++ I+ GR + D+ +E G K D T LL
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALL 486
>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
K K+ LV +L+ L ++ N S+ D ++ +L F E + + G P
Sbjct: 114 KQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPN 173
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
V+ YT L+ S KC A + M++S Y++++K FV + A F
Sbjct: 174 VISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFE 233
Query: 430 KL---KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
L K++ P +Y MI ++ +G K R V + M G + + TV
Sbjct: 234 TLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVF--SSMVGKGVPQSTVT 284
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
Y V + D++ QR D+ ++K R ++ S+F +G PT Y
Sbjct: 295 YKEVSKIYDQM-QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 353
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
L+ + +A TV +M DL +Y ++ +V +D+ A ++F ++K
Sbjct: 354 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 413
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
GF P Y +I+ + + + K +V ++ ++G K ++ + ++
Sbjct: 414 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIM 461
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 14/218 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LG+ +Y L EL +++
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGR-AKRYEAANELFQEL--KENC 471
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE------SLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
S A+M ++ FG LF G P V Y L+ +
Sbjct: 472 GRSSARVYAVM-----IKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGM 526
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
EA +++ NM + C D+ ++ +++ RAI F+K+KE+ P Y
Sbjct: 527 IDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNT 586
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++ +G + +E ++ GF+ D T +L+
Sbjct: 587 ILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILE 624
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 15/183 (8%)
Query: 315 YMLVMTLLDELGQRDDLNLSQQD-----CTA-------IMKVGIRLQKFGVVESLFHWFT 362
YM ++ L+E G D++ + QD C+ I+K+ + + S+F+
Sbjct: 127 YMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIK 186
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIKLFVALND 420
+PT +Y TLI + E E + ++N S NC D Y +I F L
Sbjct: 187 GRKCNPTATVYNTLILMLMHEGH-HEKIHELYNEICSEGNCSPDTITYSALISAFGKLER 245
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
A R F ++KE G PT IY ++ ++ ++ + +E + G T E
Sbjct: 246 YDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTE 305
Query: 481 LLQ 483
L++
Sbjct: 306 LIK 308
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 2/166 (1%)
Query: 288 VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347
+ +G D Y+ LI GK ++Y L DE+ + + L+ +++ T I+ + +
Sbjct: 220 ICSEGNCSPDTITYSALISAFGK-LERYDFAFRLFDEM-KENGLHPTEKIYTTILAMYFK 277
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
L K L G PTV YT LI + +A ++ +NM C D+
Sbjct: 278 LNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVL 337
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
+I + + A++ F K+ P Y +I+ S
Sbjct: 338 INNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFES 383
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 101/245 (41%), Gaps = 5/245 (2%)
Query: 216 LQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFK-LENFV-SLASKGVLEATAKGF 273
+Q F WA K+ H D + + L + ++ +++ + S S G E +
Sbjct: 108 IQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILK 167
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
+ G + L + + GR +P+ +Y LIL L + + + L +E+ +
Sbjct: 168 ILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILML-MHEGHHEKIHELYNEICSEGNC 226
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ +A++ +L+++ LF +G PT +YTT++ K AL
Sbjct: 227 SPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALR 286
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+V M+ C + Y +IK + + A F + + G P + ++I I
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346
Query: 452 ASGRL 456
+GRL
Sbjct: 347 RAGRL 351
>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g23020-like [Cucumis sativus]
Length = 859
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PT V + T+IH + + +E ++ ME C D Y ++I L+ ++I A
Sbjct: 347 GVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLA 406
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
YF++++EAG P YR ++ + +A+ + E + G ++D+ T
Sbjct: 407 SNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFT 459
>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Cucumis sativus]
Length = 858
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PT V + T+IH + + +E ++ ME C D Y ++I L+ ++I A
Sbjct: 346 GVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLA 405
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
YF++++EAG P YR ++ + +A+ + E + G ++D+ T
Sbjct: 406 SNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFT 458
>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 10/210 (4%)
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
LA +LEA F KGG + A+K+ G D ++ I + D + L
Sbjct: 249 LAYNSLLEA----FCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIH-LAY 303
Query: 320 TLLDELGQRDDL-NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+LDE+ + D + N+ +C ++K + +K L + P Y ++
Sbjct: 304 RVLDEMKRYDLVPNVFTYNC--MIKKLCKKEKVEEAYQLLNEIIERSGQPDAWSYNAILA 361
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ A ++ M NCL D +Y +++KL + + RAI + + E GF P
Sbjct: 362 YHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYP 421
Query: 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+ Y M+ + K + CK EM
Sbjct: 422 SVSTYSVMVHGL--CKKKGKLEEACKYFEM 449
>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 18/293 (6%)
Query: 179 SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST 238
SH V + LD G + + ++ G N A F WA+KQ +
Sbjct: 160 SHDHVVQALDGSGFRVSNSLVMQVLKRFG--NDWVAAYGFFIWAKKQTPYVHSPEVYNLM 217
Query: 239 VEVLARHHELKVPFKL-------ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKD 291
V++L + E + +KL E +V L + + + F K + A +
Sbjct: 218 VDILGKAKEFDLMWKLVKEMKRIEGYVCLDT---MSKVMRRFAKAQRHEDAVEAFRGMGK 274
Query: 292 GGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKF 351
G D + KL+ L K + +LDE + + LS ++ +++ F
Sbjct: 275 YGVEKDTAALNKLLDALVKG-QSIEIAHNVLDEF--KSSVPLSSPSFNILINGWCKVRNF 331
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
+ G +P V Y I S +K R+ V+ M + C + Y ++
Sbjct: 332 EKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTIL 391
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ + +S+A+ + ++K+ G P Y ++ I +GRL +D C+
Sbjct: 392 LLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRL---KDACE 441
>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 426
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG D + LL + E
Sbjct: 67 FSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R +++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFAPDLVAYNSMINVFXKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L + +G P V YTTL+ + K+ EAL+V M CL DL ++I ++
Sbjct: 101 LINEMRTAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVY 194
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 108/279 (38%), Gaps = 16/279 (5%)
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE----VLARHHELKVPFKLENFV 258
++ L + ERA+ F W + D +L + VE +L R + + KL + +
Sbjct: 165 LKALDVLGKSERAILLFEWVVSNS-VSGDVKLDSKAVELMIRILGRESKYSIALKLLDKI 223
Query: 259 SLASKGVLEATA-----KGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKN 311
+ K L+ A + + G K A + KD G L PS+ Y ++ GK
Sbjct: 224 PI-DKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCG--LSPSLVTYNVMLDVYGKM 280
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
+ ++ LLDE+ + + L + C+ ++ R + F SG +P V
Sbjct: 281 GRSWDKILDLLDEM-RNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTV 339
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y L+ EAL ++ ME +NC D Y ++ +V +
Sbjct: 340 TYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTM 399
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
G P Y +I + +G+ K + + + +G
Sbjct: 400 TRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSG 438
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
+ + SG P +V Y +L++ +C +A ++ + S DL +Y +IK
Sbjct: 672 AQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIK 731
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
F + AIR S++ G CP Y + + G A+ +V
Sbjct: 732 GFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEV 780
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG---KNPDKYMLVMTLLDELGQR 328
G+ G + A+ L+ + G + + Y LI L K D+ M V ++ G
Sbjct: 280 GYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCE 339
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + K G+ + + V++ + G P+ V Y ++ + +++ E
Sbjct: 340 ADIVTYTALISGFCKWGMIDKGYSVLDDM----RKKGVMPSQVTYMQIMVAHEKKEQFEE 395
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
L ++ M+ C DL Y VVI+L L ++ A+R +++++ G P D + MI
Sbjct: 396 CLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMIN 455
Query: 449 IFMASGRL 456
F + G L
Sbjct: 456 GFTSQGFL 463
>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 882
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 339 TAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
T VGI R ++FG + L G P VV Y LIHS EAL V M
Sbjct: 388 TYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQM 447
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ C D Y +I + + A+ + +++E G P Y MI SG L
Sbjct: 448 QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNL 507
Query: 457 A 457
+
Sbjct: 508 S 508
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 14/218 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LG+ +Y L EL +++
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGR-AKRYEAANELFQEL--KENC 471
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE------SLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
S A+M ++ FG LF G P V Y L+ +
Sbjct: 472 GRSSARVYAVM-----IKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGM 526
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
EA +++ NM + C D+ ++ +++ RAI F+K+KE+ P Y
Sbjct: 527 IDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNT 586
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++ +G + +E ++ GF+ D T +L+
Sbjct: 587 ILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILE 624
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 15/183 (8%)
Query: 315 YMLVMTLLDELGQRDDLNLSQQD-----CTA-------IMKVGIRLQKFGVVESLFHWFT 362
YM ++ L+E G D++ + QD C+ I+K+ + + S+F+
Sbjct: 127 YMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIK 186
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIKLFVALND 420
+PT +Y TLI + E E + ++N S NC D Y +I F L
Sbjct: 187 GRKCNPTATVYNTLILMLMHEGH-HEKIHELYNEICSEGNCSPDTITYSALISAFGKLER 245
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
A R F ++KE G PT IY ++ ++ ++ + +E + G T E
Sbjct: 246 YDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTE 305
Query: 481 LLQ 483
L++
Sbjct: 306 LIK 308
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 2/166 (1%)
Query: 288 VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347
+ +G D Y+ LI GK ++Y L DE+ + + L+ +++ T I+ + +
Sbjct: 220 ICSEGNCSPDTITYSALISAFGK-LERYDFAFRLFDEM-KENGLHPTEKIYTTILAMYFK 277
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
L K L G PTV YT LI + +A ++ +NM C D+
Sbjct: 278 LNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVL 337
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
+I + + A++ F K+ P Y +I+ S
Sbjct: 338 INNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFES 383
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 101/245 (41%), Gaps = 5/245 (2%)
Query: 216 LQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFK-LENFV-SLASKGVLEATAKGF 273
+Q F WA K+ H D + + L + ++ +++ + S S G E +
Sbjct: 108 IQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILK 167
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
+ G + L + + GR +P+ +Y LIL L + + + L +E+ +
Sbjct: 168 ILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILML-MHEGHHEKIHELYNEICSEGNC 226
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ +A++ +L+++ LF +G PT +YTT++ K AL
Sbjct: 227 SPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALR 286
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+V M+ C + Y +IK + + A F + + G P + ++I I
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346
Query: 452 ASGRL 456
+GRL
Sbjct: 347 RAGRL 351
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 16/230 (6%)
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLK 280
+LFP + ++ L R EL+V +L+ V + ++G+ G K G+L
Sbjct: 404 YLFPTIVTYNTLLDGLCRQGELEVAQQLK--VEMINEGIAPDIVTYTILVNGSCKMGSLS 461
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
+A + G LD YA I L+LG + L +L + G DL +
Sbjct: 462 MAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK-GFPPDLIIYNVV 520
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
+ K+G L++ L G P V YT++IH+ L + R+ + + M
Sbjct: 521 VDGLCKLG-NLEE---ASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEML 576
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ + Y V+I + RA YFS+++E G P Y +I
Sbjct: 577 SKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 15/161 (9%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI---------------RLQKFGVVESLFHWFTHS 364
TLLD L ++ +L ++QQ ++ GI ++ + + F H
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G + Y T I L A ++ M A DL Y VV+ L ++ A
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEA 533
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
K+ G P Y Y +I + +GRL K R++ E
Sbjct: 534 SELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYE 574
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 47/262 (17%), Positives = 102/262 (38%), Gaps = 25/262 (9%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF-KLENFVSLASKGVLEATA 270
P AL+ F WA+ QP + + + +E+LA+++ ++ + +E ++ +++
Sbjct: 95 PRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLI 154
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDP--SIYAKLILELGKNPDKYMLVMTLLDELGQR 328
G V LL+ M++ S++ K+I +
Sbjct: 155 GGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMI----------------------K 192
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
L+ ++C I+++ ++ G PT+V Y TL+ S K ++
Sbjct: 193 SRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQ 252
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
L ++ M+ C + Y V+I + +A ++ + G + Y +I
Sbjct: 253 GLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIY 312
Query: 449 IFMASGRLAKCRDVCKEAEMAG 470
+ G LA+ + +E + G
Sbjct: 313 GYFNKGMLAEALSLQEEMVLKG 334
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/189 (16%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS--------------- 364
L++ L ++ + ++ ++K G+++ + ++ +F
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK 333
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PTV Y + I+ + +A+ + +M A+N L D+ +Y +I + L ++ +A
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F +L+ PT Y ++ G L + + + EM + V + +
Sbjct: 394 FLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL--KVEMINEGIAPDIVTYTILV 451
Query: 485 EKESRIGTI 493
++G++
Sbjct: 452 NGSCKMGSL 460
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 16/230 (6%)
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLK 280
+LFP + ++ L R EL+V +L+ V + ++G+ G K G+L
Sbjct: 404 YLFPTIVTYNTLLDGLCRQGELEVAQQLK--VEMINEGIAPDIVTYTILVNGSCKMGSLS 461
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
+A + G LD YA I L+LG + L +L + G DL +
Sbjct: 462 MAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK-GFPPDLIIYNVV 520
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
+ K+G L++ L G P V YT++IH+ L + R+ + + M
Sbjct: 521 VDGLCKLG-NLEE---ASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEML 576
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ + Y V+I + RA YFS+++E G P Y +I
Sbjct: 577 SKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 15/161 (9%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI---------------RLQKFGVVESLFHWFTHS 364
TLLD L ++ +L ++QQ ++ GI ++ + + F H
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G + Y T I L A ++ M A DL Y VV+ L ++ A
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEA 533
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
K+ G P Y Y +I + +GRL K R++ E
Sbjct: 534 SELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYE 574
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 47/262 (17%), Positives = 102/262 (38%), Gaps = 25/262 (9%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF-KLENFVSLASKGVLEATA 270
P AL+ F WA+ QP + + + +E+LA+++ ++ + +E ++ +++
Sbjct: 95 PRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLI 154
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDP--SIYAKLILELGKNPDKYMLVMTLLDELGQR 328
G V LL+ M++ S++ K+I +
Sbjct: 155 GGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMI----------------------K 192
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
L+ ++C I+++ ++ G PT+V Y TL+ S K ++
Sbjct: 193 SRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQ 252
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
L ++ M+ C + Y V+I + +A ++ + G + Y +I
Sbjct: 253 GLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIY 312
Query: 449 IFMASGRLAKCRDVCKEAEMAG 470
+ G LA+ + +E + G
Sbjct: 313 GYFNKGMLAEALSLQEEMVLKG 334
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/189 (16%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS--------------- 364
L++ L ++ + ++ ++K G+++ + ++ +F
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK 333
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PTV Y + I+ + +A+ + +M A+N L D+ +Y +I + L ++ +A
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F +L+ PT Y ++ G L + + + EM + V + +
Sbjct: 394 FLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL--KVEMINEGIAPDIVTYTILV 451
Query: 485 EKESRIGTI 493
++G++
Sbjct: 452 NGSCKMGSL 460
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 8/176 (4%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
A+KL G LD Y LI L+ GK P + T+ + D + LS
Sbjct: 123 AYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM-I 181
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+ K G + G +F G P V+Y+ LIH +K AL ++ M+
Sbjct: 182 DGLCKAG----RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 237
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ C D Y ++I D++ A +F ++ EAG P Y +I F +G
Sbjct: 238 AFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAG 293
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G L+ A LL D G D Y LI LGK + L E+ R L
Sbjct: 78 GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFE-AYKLFKEMASRG-L 135
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
L TA+++ ++ K S++ T G P VV +T+I + A+
Sbjct: 136 ALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVR 195
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ +MEA + Y +I + A+ +++K+A P Y +I
Sbjct: 196 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 255
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQT 477
SG +A R E AG K D T
Sbjct: 256 KSGDVAAARAFFDEMLEAGCKPDVYT 281
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 16/207 (7%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G VK G L A L G +D Y ++ L KN K + L+++
Sbjct: 8 GLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNK-KIQEAVALMEK------- 59
Query: 332 NLSQQDCT-------AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
++ CT A++ ++ + L +G P VV YT+LI +K
Sbjct: 60 -ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKK 118
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ EA + M + D Y +I+ + I +A + + G P
Sbjct: 119 RSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLS 178
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGF 471
MI +GR+ + K E G
Sbjct: 179 TMIDGLCKAGRIGAAVRIFKSMEARGL 205
>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 841
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 119/300 (39%), Gaps = 13/300 (4%)
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK-VPFKLEN 256
S++ V+ L +N + L F WA++Q DD A + L + + + +
Sbjct: 181 SMTHVVQALKIINDADGMLSLFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDE 240
Query: 257 FVSLASKGVLEAT------AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE-LG 309
V +SKG + + + K L+L++ +D G +D Y LI L
Sbjct: 241 MVQDSSKGGISSVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLN 300
Query: 310 KN-PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
K P K + + D + + ++ K G + V LF P
Sbjct: 301 KGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAKSG----RLDVAFKLFQEMKERKIRP 356
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
+ ++++L+ S + ++ + M+ Y +I+ + + A+R +
Sbjct: 357 SFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLW 416
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
++K+AGF P Y +Y +I SG+L + K+ + AGF T LL++ S
Sbjct: 417 DEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAAS 476
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 37/210 (17%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
K G L +A+KL K+ R + PS + + +L+D +G+ L+ S
Sbjct: 335 KSGRLDVAFKLFQEMKE--RKIRPS---------------FGIFSSLVDSMGKSGRLDTS 377
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
MK+ + +Q FG+ S MY +LI S K AL +
Sbjct: 378 -------MKIYMEMQGFGLRSS-------------ASMYVSLIESYTKAGKLDTALRLWD 417
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+ + + Y ++I+ + A F + +AGF PT Y ++ + ASG
Sbjct: 418 EMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASG 477
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
++ + AG K T LL +
Sbjct: 478 QVDSAMKLYNSMTNAGLKPGLSTYTALLTL 507
>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 426
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG D + LL + E
Sbjct: 67 FSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R +++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFAPDLVAYNSMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L + +G P V YTTL+ + K+ EAL+V M CL DL ++I ++
Sbjct: 101 LINEMRTAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVY 194
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YTTLI K AL M + C +L Y +IKL +
Sbjct: 355 GMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEM 414
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F L+ AG+ P + ++ +F +G ++ V KE + AG+ ++ T V L I
Sbjct: 415 MAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL--I 472
Query: 485 EKESRIG 491
SR G
Sbjct: 473 SSYSRCG 479
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
++G P+VV Y +LI + + + EAL + ME D+ Y +I + I
Sbjct: 318 NAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKID 377
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A+ +S++ G P Y +I++ G+ + V + AG+ D T LL
Sbjct: 378 AALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLL 437
Query: 483 QI 484
+
Sbjct: 438 SV 439
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 296 LDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
LD ++ ++ GKN K V++L+ E + +N S ++M + RL
Sbjct: 603 LDINVLNAMVSIYGKNKMVKKVEEVLSLMME----NSINHSAATYNSLMHMYSRLGDCEK 658
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
ES+ SG P Y T+I++ + + +EA + M+ S D+ Y + IK
Sbjct: 659 CESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIK 718
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
+VA AI L G P + +++ + GR+ + +
Sbjct: 719 SYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAK 765
>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
Length = 526
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
K K+ LV +L+ L ++ N S+ D ++ +L F E + + G P
Sbjct: 57 KQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPN 116
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
V+ YT L+ S KC A + M++S Y++++K FV + A F
Sbjct: 117 VISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFE 176
Query: 430 KL---KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
L K++ P +Y MI ++ +G K R V + M G + + TV
Sbjct: 177 TLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVF--SSMVGKGVPQSTVT 227
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
Y V + D++ QR D+ ++K R ++ S+F +G PT Y
Sbjct: 238 YKEVSKIYDQM-QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 296
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
L+ + +A TV +M DL +Y ++ +V +D+ A ++F ++K
Sbjct: 297 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 356
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
GF P Y +I+ + + + K +V ++ ++G K ++ + ++
Sbjct: 357 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIM 404
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 8/198 (4%)
Query: 257 FVSLASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
F SL ++G+ + G K G +AWK L G D Y+ I L K
Sbjct: 452 FDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 511
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
++ + E+ Q+D + S + T ++ ++ + +G+V + SG +P V
Sbjct: 512 MKGSQE-GLSFIGEMLQKD-VKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDV 569
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V YTT + + E + EA V+ M + D AY ++ ++ A+ +
Sbjct: 570 VTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQ 629
Query: 431 LKEAGFCPTYDIYRDMIR 448
+ P Y ++R
Sbjct: 630 MTSVASVPNQFTYFILLR 647
>gi|124360264|gb|ABN08277.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 368
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 107/303 (35%), Gaps = 42/303 (13%)
Query: 177 LDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLA 236
L D+ L G+ L L+ T+ + N Q F W Q+ L D +
Sbjct: 50 LQHASDLTSTLTSVGQLLTMKDLNATLHHFANSNKFNHVSQLFLWMQENKKL--DVYSYS 107
Query: 237 STVEVLARHHELKVPFKLENFVSLASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDG 292
++ +A + KL N + + S V + +K G KL K
Sbjct: 108 HYIKFMANKLDASTMLKLYNDIQVESAKDNVYVCNSVLSCLIKKGKFDTTMKLFRQMKHD 167
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G + D Y+ LI K D Y + L+ EL Q + L + AI+ V K+
Sbjct: 168 GLVPDLVTYSTLIAGCVKVKDGYPKALELIQEL-QDNKLRMDDVIYGAILAVCASNGKWE 226
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
E F+ GR P V Y++L+++
Sbjct: 227 EAEYYFNQMKSEGRSPNVYHYSSLLNA--------------------------------- 253
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ A D ++A ++ G P I ++++++ G K R++ + E G+
Sbjct: 254 --YSACGDFTKADALIQDMESEGLAPNKVILTTLLKVYVRGGLFEKSRELLAKLESLGYA 311
Query: 473 LDK 475
D+
Sbjct: 312 EDE 314
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR-EALTVVWNM 396
C +++ I+ KF LF H G P +V Y+TLI + K +AL ++ +
Sbjct: 141 CNSVLSCLIKKGKFDTTMKLFRQMKHDGLVPDLVTYSTLIAGCVKVKDGYPKALELIQEL 200
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + D Y ++ + + A YF+++K G P Y ++ + A G
Sbjct: 201 QDNKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYHYSSLLNAYSACGDF 260
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELLQI 484
K + ++ E G +K + LL++
Sbjct: 261 TKADALIQDMESEGLAPNKVILTTLLKV 288
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 89/232 (38%), Gaps = 7/232 (3%)
Query: 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK 314
E+F S+ S V+ K G A LL ++ G +D Y LI N
Sbjct: 177 EDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRY 236
Query: 315 YMLVMTL--LDELGQRDDLNLSQQDCTAIMKVGIRLQKF-GVVESLFHWFTHSGRDPTVV 371
VM L+E G R L K+G+ K G+V+S+ SG P +
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSM----KSSGVAPDLY 292
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y TLI S EA V M+A+ D Y ++ ++ A+ ++
Sbjct: 293 TYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEM 352
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ +GF P+ Y +I + G L + ++ + G K D T LL
Sbjct: 353 EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLS 404
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V YTTL+ K A+ V M + C ++ + +IK+ +
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
++ F ++K P + ++ +F +G ++ V KE + AGF ++ T L I
Sbjct: 451 MKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL--I 508
Query: 485 EKESRIG 491
SR G
Sbjct: 509 SAYSRCG 515
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 89/232 (38%), Gaps = 7/232 (3%)
Query: 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK 314
E+F S+ S V+ K G A LL ++ G +D Y LI N
Sbjct: 177 EDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRY 236
Query: 315 YMLVMTL--LDELGQRDDLNLSQQDCTAIMKVGIRLQKF-GVVESLFHWFTHSGRDPTVV 371
VM L+E G R L K+G+ K G+V+S+ SG P +
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSM----KSSGVAPDLY 292
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y TLI S EA V M+A+ D Y ++ ++ A+ ++
Sbjct: 293 TYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEM 352
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ +GF P+ Y +I + G L + ++ + G K D T LL
Sbjct: 353 EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLS 404
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V YTTL+ K A+ V M + C ++ + +IK+ +
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
++ F ++K P + ++ +F +G ++ V KE + AGF ++ T L I
Sbjct: 451 MKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL--I 508
Query: 485 EKESRIG 491
SR G
Sbjct: 509 SAYSRCG 515
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
+ LF G DP Y+ LI S SE++ +EAL ++ ME S C ++ Y +I
Sbjct: 425 IAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLI 484
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
N + A F +++ G + Y +I S R+ + + + M G K
Sbjct: 485 DGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLK 544
Query: 473 LDKQTVVELLQ 483
DK T +L+
Sbjct: 545 PDKFTYTTMLK 555
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 4/213 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L EL +++
Sbjct: 416 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGK-AKRYEAANELFQEL--KENC 472
Query: 332 NLSQQDCTAIM-KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
S A+M K + +F LF+ G P V Y LI + EA
Sbjct: 473 GSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAF 532
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ ME + C D+ ++ +++ RA+ F+K+K + P Y ++
Sbjct: 533 SLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCL 592
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + KE GF+ D T +L+
Sbjct: 593 SRAGLFEEATKLMKEMNSKGFEYDLITYSSILE 625
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 5/174 (2%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D + Y LI L +N L T+ D + + + + + I+K+ R++ S
Sbjct: 124 DSTTYMALIRCLDENRLVGELWRTIQDMV--KSPCAIGPSELSEIVKILGRVKMVNKALS 181
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIKL 414
+F+ PT Y ++I + E E + ++N S +C D Y +I
Sbjct: 182 IFYQVKGRKCRPTAGTYNSVILMLMQEGH-HEKVHELYNEMCSEGHCFPDTVTYSALISA 240
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
F LN A+R F ++KE G PT IY ++ I+ G++ + ++ E M
Sbjct: 241 FGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRM 294
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 116/289 (40%), Gaps = 29/289 (10%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLAR--HHELKVPFKLEN 256
LS V+ LG + + +AL F + K P S + +L + HHE KV E
Sbjct: 163 LSEIVKILGRVKMVNKALSIF-YQVKGRKCRPTAGTYNSVILMLMQEGHHE-KVH---EL 217
Query: 257 FVSLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---L 306
+ + S+G A F K A +L K+ G IY L+
Sbjct: 218 YNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYF 277
Query: 307 ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR 366
+LGK + + L+ E+ R + I +G K G VE + + + +
Sbjct: 278 KLGKVEE----ALNLVHEMRMRRCVPTVYTYTELIRGLG----KSGRVEDAYGVYKNMLK 329
Query: 367 D---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDIS 422
D P VV+ LI+ + +EA+ + M NC ++ Y +IK LF S
Sbjct: 330 DGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPS 389
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
A + ++K+ G P+ Y +I F + R+ K + +E + GF
Sbjct: 390 EASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF 438
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V+ Y TLI + +A+ V M AS C DL Y ++ + A
Sbjct: 130 GLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDA 189
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
R F +L E GF P Y ++ F G VC+E AGFK D T ++ +
Sbjct: 190 ERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHM 249
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL- 414
++F G PT+ ++ + + + + E +V E + F + V++ L
Sbjct: 645 AVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIV--QELQDMGFKISKSTVILMLD 702
Query: 415 -FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
F DI ++ ++ +KEAG+ P IYR MI + + R + E E AGF+
Sbjct: 703 AFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEP 762
Query: 474 DKQTVVELL 482
D + LL
Sbjct: 763 DLTILNTLL 771
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
VE + +G + Y T+IH + AL + M A C D Y V+I
Sbjct: 223 TVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLI 282
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
++ IS A + ++ +AG PT + +I + GR + +G K
Sbjct: 283 DSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVK 342
Query: 473 LDKQTVVELLQI 484
D+ + +L I
Sbjct: 343 PDRLAYLVMLDI 354
>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 129/327 (39%), Gaps = 38/327 (11%)
Query: 182 DVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEV 241
++ VLD+CG L + + H P A + FCWA ++P D R S + +
Sbjct: 92 NMEAVLDECGINLSHDLVIEVLERFRHARKP--AFRFFCWAAEKPGFVHDSRTYHSMMII 149
Query: 242 LARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY 301
LA+ + E +S+ + E K + +A + AK+ + +
Sbjct: 150 LAKARQ------FETMMSM----LEEMGEKRLLTLDTFSIAMRAFAAAKERKKAVG---- 195
Query: 302 AKLILELGKNPDKYMLVMT---LLDELGQRDDLNLSQQ---------------DCTAIMK 343
I EL KN + V T LLD LG R L Q T ++
Sbjct: 196 ---IFELMKNHKYRVGVETINALLDSLG-RAKLGKEAQALFGKLEGRFTPNLRTYTVLLN 251
Query: 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
R++ +++ G P +V + ++ L KK +A+ M+A
Sbjct: 252 GWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSP 311
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
D+ +Y ++I+ + A+ YF ++ ++G P +Y ++ + R+ ++
Sbjct: 312 DVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELL 371
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESRI 490
KE + G D +T L+++ R+
Sbjct: 372 KEMKEKGCPPDGKTYNALIKLMTSQRM 398
>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
K K+ LV +L+ L ++ N S+ D ++ +L F E + + G P
Sbjct: 121 KQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPN 180
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
V+ YT L+ S KC A + M++S Y++++K FV + A F
Sbjct: 181 VISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFE 240
Query: 430 KL---KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
L K++ P +Y MI ++ +G K R V + M G + + TV
Sbjct: 241 TLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVF--SSMVGKGVPQSTVT 291
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
Y V + D++ QR D+ ++K R ++ S+F +G PT Y
Sbjct: 302 YKEVSKIYDQM-QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 360
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
L+ + +A TV +M DL +Y ++ +V +D+ A ++F ++K
Sbjct: 361 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 420
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
GF P Y +I+ + + + K +V ++ ++G K ++ + ++
Sbjct: 421 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIM 468
>gi|357445509|ref|XP_003593032.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482080|gb|AES63283.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 627
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 107/303 (35%), Gaps = 42/303 (13%)
Query: 177 LDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLA 236
L D+ L G+ L L+ T+ + N Q F W Q+ L D +
Sbjct: 50 LQHASDLTSTLTSVGQLLTMKDLNATLHHFANSNKFNHVSQLFLWMQENKKL--DVYSYS 107
Query: 237 STVEVLARHHELKVPFKLENFVSLASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDG 292
++ +A + KL N + + S V + +K G KL K
Sbjct: 108 HYIKFMANKLDASTMLKLYNDIQVESAKDNVYVCNSVLSCLIKKGKFDTTMKLFRQMKHD 167
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G + D Y+ LI K D Y + L+ EL Q + L + AI+ V K+
Sbjct: 168 GLVPDLVTYSTLIAGCVKVKDGYPKALELIQEL-QDNKLRMDDVIYGAILAVCASNGKWE 226
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
E F+ GR P V Y++L+++
Sbjct: 227 EAEYYFNQMKSEGRSPNVYHYSSLLNA--------------------------------- 253
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ A D ++A ++ G P I ++++++ G K R++ + E G+
Sbjct: 254 --YSACGDFTKADALIQDMESEGLAPNKVILTTLLKVYVRGGLFEKSRELLAKLESLGYA 311
Query: 473 LDK 475
D+
Sbjct: 312 EDE 314
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR-EALTVVWNM 396
C +++ I+ KF LF H G P +V Y+TLI + K +AL ++ +
Sbjct: 141 CNSVLSCLIKKGKFDTTMKLFRQMKHDGLVPDLVTYSTLIAGCVKVKDGYPKALELIQEL 200
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + D Y ++ + + A YF+++K G P Y ++ + A G
Sbjct: 201 QDNKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYHYSSLLNAYSACGDF 260
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELLQI 484
K + ++ E G +K + LL++
Sbjct: 261 TKADALIQDMESEGLAPNKVILTTLLKV 288
>gi|224089785|ref|XP_002308813.1| predicted protein [Populus trichocarpa]
gi|222854789|gb|EEE92336.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 86/197 (43%), Gaps = 6/197 (3%)
Query: 289 AKDGGRMLDPSIYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI 346
A+ G LD + ++ LI ++ N D Y+ V + LG + +L + ++
Sbjct: 5 ARTGEWRLDATTFSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYN----ILLDAMG 60
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++ V+ + +G P+ V + L+H+ + +A + M+ ++
Sbjct: 61 RAKRPWQVKKFYQDIIDNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVV 120
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y ++ + L + +A+ F +K +G P + MI IF G++++ + E
Sbjct: 121 LYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEVENTLNEM 180
Query: 467 EMAGFKLDKQTVVELLQ 483
AGF+ + + L+Q
Sbjct: 181 FEAGFQPNIFILTSLIQ 197
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 81/205 (39%), Gaps = 9/205 (4%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
A+KL G LD Y LI EL GK P + T+ D + LS
Sbjct: 75 AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTM-I 133
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+ K G + G +F G P V+Y+ LIH +K AL ++ M+
Sbjct: 134 DGLSKAG----RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 189
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL-A 457
+ C D Y V+I D+ A +F ++ EAG P Y +I F +G A
Sbjct: 190 AFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDA 249
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELL 482
+ +E + G +D T ++
Sbjct: 250 ASHSLAQETTINGCTIDIHTYTAIV 274
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 8/176 (4%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
A+KL G LD Y LI EL GK P + T+ D + LS
Sbjct: 356 AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTM-I 414
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+ K G + G +F G P V+Y+ LIH +K AL ++ M+
Sbjct: 415 DGLSKAG----RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 470
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ C D Y ++I D+ A +F ++ EAG P Y +I F +G
Sbjct: 471 AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAG 526
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 79/206 (38%), Gaps = 2/206 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G L+ A LL D G D Y LI LGK + L E+ R L
Sbjct: 311 GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE-AYKLFKEMALRG-L 368
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
L TA+++ ++ K S++ T G P VV +T+I + A+
Sbjct: 369 ALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVR 428
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ +MEA + Y +I + A+ +++K+A P Y +I
Sbjct: 429 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 488
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQT 477
SG + R E AG K D T
Sbjct: 489 KSGDVEAARAFFDEMLEAGCKPDVYT 514
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 136/346 (39%), Gaps = 62/346 (17%)
Query: 155 SICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPER 214
+IC+ + KNP+ S+ + + G A VL+ R G+L
Sbjct: 87 NICRLLSKNPN--SSIEKLLLGASFKVSPALVLEVLKRLSNAGAL--------------- 129
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA-----T 269
AL F WA+KQ + + ++ L + + + + L N + KGVL
Sbjct: 130 ALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVN--DMKRKGVLTKETFALI 187
Query: 270 AKGFVKGGNLKLA---------WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML--- 317
++ + + G +K A + L + + D R+LD I ++ +L DK +
Sbjct: 188 SRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRF 247
Query: 318 ------VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
LL+ GQ +L ++L + ++ G +P VV
Sbjct: 248 VPDIKSYTILLEGWGQEKNL--------------LKL------DEVYREMKDEGFEPDVV 287
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y LI++ +K +A+ + ME+ NC + +I ++ +S A+ +F +
Sbjct: 288 TYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRS 347
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
K +GF P Y ++ + S R+ + E +G + +T
Sbjct: 348 KASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRT 393
>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 827
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PTVV Y+T IH AL ++ N+ +N + ++ VI F ++
Sbjct: 350 SGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFE 409
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
A++ ++K +G P Y +I F G + KC D+ +E E + K
Sbjct: 410 ALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIK 458
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
HS P++V YT+LIH + + A+ + ++ AS+C +D Y +I F D+
Sbjct: 454 HSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMD 513
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
AI+ ++ PT R +IR + G + +V
Sbjct: 514 SAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEV 553
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 348 LQKFGVVESLFHWFTHSGRDPTV---VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
K E+ HWF + T ++Y +I++ +A +V ME
Sbjct: 348 FAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAP 407
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ Y ++ + + + + + F +LKE GF P+ Y +I +++ G+++K +V K
Sbjct: 408 IDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSK 467
Query: 465 EAEMAGFKLDKQTVVELLQ 483
E+AG K + +T L+
Sbjct: 468 MMEVAGIKHNMKTYSMLIN 486
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV + LI + + + +A+ ++ M + + Y ++ +
Sbjct: 570 IFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYA 629
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+L D +A YF+KLK G Y +++ SGR+ V + EM+ K+ +
Sbjct: 630 SLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTR--EMSSQKIPRN 687
Query: 477 TVVELLQIEKESRIGTI 493
T V + I+ +R G +
Sbjct: 688 TFVYNILIDGWARRGDV 704
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +PT +YT+LIH+ + EAL+ V M+ L Y +++ F + D A
Sbjct: 298 GIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAA 357
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+F + KE IY ++I + + + + +E E G
Sbjct: 358 DHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGI 404
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 56/138 (40%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+RL+ + ++F G P VV+Y +I + A+ V M+
Sbjct: 489 VRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTT 548
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I F D+ RA+ F ++ +G PT + +I + ++ K ++ E
Sbjct: 549 RTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDE 608
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T ++
Sbjct: 609 MSLAGISPNEHTYTTIMH 626
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T+++ ++ + G +F G V YT LIH K EAL + + M+
Sbjct: 229 TSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKE 288
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C D+P Y V++ F + + A+++F ++ E G P Y +I F G++
Sbjct: 289 DGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKM 346
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 84/206 (40%), Gaps = 8/206 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
G K + AW+L + G + D + I ++GK + + +L ++ +
Sbjct: 444 GLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEA 503
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
++ TA++ + +KF LF G P + + L+ E K +
Sbjct: 504 NEFLY-----TALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVED 558
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A+++V M + + Y ++I+ + +D RA + ++ +G P Y I+
Sbjct: 559 AMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIK 618
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLD 474
+ GRL + ++ + + G LD
Sbjct: 619 AYCRQGRLLEAEEMVVKIKEEGILLD 644
>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 2/147 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+ I+ R F V L G P VV YTT+I + EAL + M++
Sbjct: 216 STIILFYCRQHNFSKVYELLDEMEAQGCPPNVVTYTTIIVFLAKSQNTEEALQLTQRMKS 275
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSK-LKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ C D P + +I + A+ F K + AG Y MI + G ++
Sbjct: 276 AGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHHGHVS 335
Query: 458 KCRDVCKEAEMAG-FKLDKQTVVELLQ 483
K + +E E + FKLD QT LL+
Sbjct: 336 KALSLLREMETSAPFKLDGQTFYPLLK 362
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 359 HWF-----THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
HW H+ R P V+ Y+T+I + + ++ MEA C ++ Y +I
Sbjct: 197 HWTLQEMKGHAFR-PCVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPNVVTYTTIIV 255
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC-KEAEMAGFK 472
+ A++ ++K AG P + +I I +GR + DV KE AG
Sbjct: 256 FLAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVS 315
Query: 473 LDKQTVVELLQI 484
D T ++ +
Sbjct: 316 RDTSTYNSMIAM 327
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 2/214 (0%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG+ G+ +A ++L + K G D Y +LI K K L + +E+ R
Sbjct: 478 KGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCK-ISKMELASGMFNEMMDRG- 535
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L ++ TA++ + +K + SG P V Y LIH + A
Sbjct: 536 LCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 595
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ M D+ Y VI I A+ F+K+ + G P Y +I+
Sbjct: 596 ELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQAL 655
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
GR+ + ++ E + G D+ T V+++++
Sbjct: 656 GQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEV 689
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 2/212 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++LA + D G + Y LI G D+ + + E +R
Sbjct: 514 GFCKISKMELASGMFNEMMDRGLCPNEVTYTALIS--GYCKDEKLDCAARMLERMKRSGC 571
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ Q ++ + F E L P VV Y+T+I+ + AL
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALE 631
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ M CL +L Y +I+ + A FS+LK+ G P Y MI + +
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCV 691
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
SG++ + D E AG + QT L++
Sbjct: 692 MSGKVDRAFDFLGEMINAGCQPTLQTYDVLIK 723
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G R+ + + LFH + G P V Y L++ + + AL V M CL +
Sbjct: 377 GQRVSRMAI--GLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPN 434
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+Y +I+ + + D +A+ + + + PT Y +I+ + SG V +
Sbjct: 435 TSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLE 494
Query: 465 EAEMAGFKLDKQTVVELL 482
+ G + D+ + EL+
Sbjct: 495 LMKANGCQPDEWSYTELI 512
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 19/229 (8%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336
G ++ AWK+ + K G P++Y L G+ + + + L + RD + +
Sbjct: 347 GRIEDAWKIFIDMKKKG--CKPNVYTYTSLISGQRVSR--MAIGLFHRM-SRDGVVPNTV 401
Query: 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
A+M V + + +F+ G P Y LI + +A++++ NM
Sbjct: 402 TYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNM 461
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF------ 450
L Y ++IK + D AIR +K G P Y ++I F
Sbjct: 462 LKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKM 521
Query: 451 -MASGRLAKCRD-------VCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
+ASG + D V A ++G+ D++ +E+ R G
Sbjct: 522 ELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSG 570
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 348 LQKFGVVESLFHWFTHSGRDPTV---VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
K E+ HWF + T ++Y +I++ +A +V ME
Sbjct: 369 FAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAP 428
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ Y ++ + + + + + F +LKE GF P+ Y +I +++ G+++K +V K
Sbjct: 429 IDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSK 488
Query: 465 EAEMAGFKLDKQTVVELLQ 483
E+AG K + +T L+
Sbjct: 489 MMEVAGIKHNMKTYSMLIN 507
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV + LI + + + +A+ ++ M + + Y ++ +
Sbjct: 591 IFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYA 650
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+L D +A YF+KLK G Y +++ SGR+ V + EM+ K+ +
Sbjct: 651 SLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTR--EMSSQKIPRN 708
Query: 477 TVVELLQIEKESRIGTI 493
T V + I+ +R G +
Sbjct: 709 TFVYNILIDGWARRGDV 725
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +PT +YT+LIH+ + EAL+ V M+ L Y +++ F + D A
Sbjct: 319 GIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAA 378
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+F + KE IY ++I + + + + +E E G
Sbjct: 379 DHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGI 425
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 56/138 (40%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+RL+ + ++F G P VV+Y +I + A+ V M+
Sbjct: 510 VRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTT 569
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I F D+ RA+ F ++ +G PT + +I + ++ K ++ E
Sbjct: 570 RTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDE 629
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T ++
Sbjct: 630 MSLAGISPNEHTYTTIMH 647
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 8/215 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K + A LL + G P+ Y LI LGK +Y + L EL +++
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK-AKRYDIAHELFQEL--KENC 467
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
S A+M L K G ++ +LF G P V Y L+ E
Sbjct: 468 GSSSARVYAVMIK--HLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDE 525
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
ALT + M+ C+ D+ +Y +++ RA+ S +K++ P Y ++
Sbjct: 526 ALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLG 585
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + KE + GF+ D T +L+
Sbjct: 586 AMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILE 620
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 19/284 (6%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS +R LG+ + +A+ F + K P + S + +L + + +L N
Sbjct: 158 LSDIIRMLGNAKMISKAVAIF-YQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYN-- 214
Query: 259 SLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
++++G A F K G A +LL KD G IY LI K
Sbjct: 215 EMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKL 274
Query: 312 PDKYMLVMTLLDELGQ---RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
+ + + L +E+ R D+ + + K G +F + FH G P
Sbjct: 275 NNVHG-ALGLFEEMRHQYCRPDVFTYTELIRGLGKAG----RFDEAYNFFHEMRREGCRP 329
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRY 427
V+ +I+ + +A+ + M C+ + Y +IK LF + + IS +
Sbjct: 330 DTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSW 389
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F ++K +G P+ Y +I F + R K + +E + GF
Sbjct: 390 FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGF 433
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 5/181 (2%)
Query: 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362
L +LGK DK + + +++ G + + +++G F V E + +
Sbjct: 378 NLYSKLGK-MDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDM----S 432
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
++G P + Y L+++ + AL ++ ME+ +C L Y ++I F+ + D+
Sbjct: 433 NAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLR 492
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A +K AGF P+ Y ++ +G++ + + E +AG ++++ L+
Sbjct: 493 MAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLI 552
Query: 483 Q 483
+
Sbjct: 553 E 553
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+ F +G +P V YT LIH+ + R A+ V MEA + Y V+I +
Sbjct: 213 AAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGY 272
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
L D+ A R+F + + IY ++I + +G + + + E G +
Sbjct: 273 GRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLE 329
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 4/136 (2%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
MK+G F V + +G P+ Y ++H + A +++ M +
Sbjct: 484 GFMKIGDLRMAFETVRDM----KMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVA 539
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
+ +Y +I+ + + D+ A +YF+++KE G P Y +++ +GR+
Sbjct: 540 GVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQST 599
Query: 460 RDVCKEAEMAGFKLDK 475
+ E AG ++
Sbjct: 600 LAITAEMAAAGVPMNN 615
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 350 KFGVVESLFHWFTHSGRDP---TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ G VE+ WF + + V+Y +IH+ A ++ ME L
Sbjct: 274 RLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLG 333
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLK---EAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
Y +++ +V + + + F +LK E G PT Y +I ++ G++ K +
Sbjct: 334 LYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQIS 393
Query: 464 KEAEMAGFKLDKQT 477
E E G K +++T
Sbjct: 394 NEMEDQGIKHNRKT 407
>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Glycine max]
Length = 622
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 97/269 (36%), Gaps = 17/269 (6%)
Query: 219 FCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL------------ENFVSLASKGVL 266
F WAQ +P P +L + V LA+ E +KL L S G
Sbjct: 145 FLWAQTRPAFRPGPKLFDAVVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTF 204
Query: 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326
+ + + G KLA + A + ++D L+ L + K V +
Sbjct: 205 AIMIRRYARAGMSKLAIRTYEFATNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFL 264
Query: 327 QRDDLNLSQQDCTAIMKVGI----RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
+ +L+LS + + + RL+K E L+ + R PTVV Y TL+
Sbjct: 265 WKKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEMKENMR-PTVVTYGTLVEGYCR 323
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
++ +AL +V +M + Y +I A+ + PT
Sbjct: 324 MRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDST 383
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
Y +++ F +G L + K GF
Sbjct: 384 YNSLVKGFCKAGDLVGASKILKMMISRGF 412
>gi|297801170|ref|XP_002868469.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
gi|297314305|gb|EFH44728.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 91/201 (45%), Gaps = 2/201 (0%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336
G L +A +L + +D G DP ++ LI LG+N + + ++ + + ++ + ++
Sbjct: 226 GALDMALELFTMMQDQGLYPDPRMFVNLITRLGENGN-WNMIDKHFESIKCKEHKD-TRA 283
Query: 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
A++++ + F VE L G P+ ++ T ++ + ++ + V+ M
Sbjct: 284 IYAALVQIIGQFGSFQDVEELVGKLKSQGVAPSANLFCTFANAYAQQGLYKQTVKVLKMM 343
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
E +L V+I F A+ + +KE+GF P Y +++ F + +
Sbjct: 344 ENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHHIKESGFTPDVVTYSTLMKAFTRAKKY 403
Query: 457 AKCRDVCKEAEMAGFKLDKQT 477
K ++ +E E +G D++
Sbjct: 404 EKVPEIFREMEASGCTADRKA 424
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 16/260 (6%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGG 277
+ LFP+ + V+ L + +L+ +K+ F S + +G + G K G
Sbjct: 415 EHASLFPNLLTVNIMVDRLCKARKLEEAYKI--FESASQRGCNPDCVTYCSLIDGLGKKG 472
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRDDLNLS 334
+ A++L D G +P +Y LI G+ D + + L+ G + DL L
Sbjct: 473 QVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRR-GCKPDLTLL 531
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ K G ++K ++ F G P V Y+ LIH + RE +
Sbjct: 532 NTYMDCVFKAG-EVEKGRMI---FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 587
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+ D AY V+ F + +A ++KE PT Y ++
Sbjct: 588 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 647
Query: 455 RLAKCRDVCKEAEMAGFKLD 474
RL + + +EA+ G +L+
Sbjct: 648 RLDEAYMLFEEAKSKGIELN 667
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L G + V ++TTL+ + E + +AL +V ++ S D+ Y V I F
Sbjct: 201 LLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFG 260
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
++ A ++F +LK G P Y MI + +GRL + ++ + E
Sbjct: 261 KAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 311
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 10/225 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
G K G + A+ L D G + +Y LI + G+ D + + ++ G
Sbjct: 483 GLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMV-HTGCS 541
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
DL L + K G + +LF G P Y+ LIH + E
Sbjct: 542 PDLTLINTYMDCVFKAGETEKG----RALFREINAHGFIPDARSYSILIHGLVKAGLANE 597
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ + M+ C+ D AY VI F +++A + ++K G PT Y +I
Sbjct: 598 TYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVID 657
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G KL+ VV I+ ++G I
Sbjct: 658 GLAKIDRLDEAYMLFEEAKSNGIKLN--VVVYSSLIDGFGKVGRI 700
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LFH G + V ++TTLI E + AL+++ M++++ D+ Y V I F
Sbjct: 217 LFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFG 276
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + ++F ++K G P Y MI + + RL
Sbjct: 277 KAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRL 316
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G + ++WK K G M D Y +I L K ++ + L ++L Q +
Sbjct: 275 FGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCK-ANRLDEAVELFEQLEQNRKVP 333
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
+ T IM G KF L G P+V+ Y ++ +++ EAL +
Sbjct: 334 CAYAYNTMIMGYG-SAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 392
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
M+ + + ++P Y ++I + ++ A+ ++ AG P
Sbjct: 393 FEEMK-RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPN 438
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 12/249 (4%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG-----VLEAT 269
A+ F WA+KQ S + V+AR+ E ++ +SL+ G +E
Sbjct: 108 AVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELV 167
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLLDELGQ 327
A VK L+ A+ ++ + S Y LI L + PD +++ + ELG
Sbjct: 168 AN-CVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGY 226
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
+++L T +++V R + SL + D +V+Y I K
Sbjct: 227 EVNVHLF----TTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVD 282
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ M++ + D Y +I + N + A+ F +L++ P Y MI
Sbjct: 283 MSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMI 342
Query: 448 RIFMASGRL 456
+ ++G+
Sbjct: 343 MGYGSAGKF 351
>gi|168019305|ref|XP_001762185.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686589|gb|EDQ72977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F ++G DP +V Y T+IH + REA ++ + + D+ +Y +I +F+
Sbjct: 3 FRDMVNAGVDPDIVTYNTMIHICSRAGRVREAKSLFKKISEKGLVPDVASYNTLISMFIK 62
Query: 418 LNDISRAIRYFSKLKEAGFCP---TYDI-------------YRDMIRIFMASGRLAKCRD 461
+ +A++Y+ K+K AG P T+ I Y MI F +GR+ +
Sbjct: 63 RGEKQKALQYYQKMKTAGVTPDTVTFRILLKHSMLTAEGIAYNAMIYAFGNAGRVDEAVR 122
Query: 462 VCKEAEMAGFKLDKQTVVELLQI 484
+ E + K D T ++ +
Sbjct: 123 ISMEMQNKAVKADVITHTTVITV 145
>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 507
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 10/269 (3%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV---SLASKGVLEATAK 271
AL F WA+KQ + + + +E L + + K+ + L + + L + A+
Sbjct: 103 ALSFFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKLLNGDTFSLIAR 162
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
+V+ +K A K + G S + KLI L K+ L D++ Q +L
Sbjct: 163 RYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQW-NL 221
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ + T +++ + Q V+ + G P VV Y +I++ KK EA+
Sbjct: 222 EPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIG 281
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISR---AIRYFSKLKEAGFCPTYDIYRDMIR 448
+ +M + N P+ + L + SR A +F K K +GF P Y ++
Sbjct: 282 IYHDMLSKNV---NPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVS 338
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ S R+ + E + G + +T
Sbjct: 339 AYCWSMRIDDAYRIVGEMKELGIGPNART 367
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL--- 418
+ +G +P+V Y ++ +E + A+ VVWN + LP + L ++L
Sbjct: 393 SETGCEPSVSTYAIMVRMFCNENQLDMAM-VVWNEMKDKGI--LPGIHMFSTLIISLCHE 449
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
N + A RYF ++ + G PT +++ R MA+G
Sbjct: 450 NKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAG 485
>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 540
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 17/213 (7%)
Query: 293 GRMLDPSIYA-KLILELGKNPDKY---------------MLVMTLLDELGQRDDLNLSQQ 336
RM D +++ KL+ E+G P++ M + L +E+ Q + +
Sbjct: 247 ARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEM-QESNCRFGES 305
Query: 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
++ V + E L G VV Y+TLI K +EA + M
Sbjct: 306 TYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTM 365
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ C +L Y ++ ++ I+ A R ++LK++ P Y +I + GR
Sbjct: 366 KQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRF 425
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
+C V ++ G KLD+ V ++ + ++R
Sbjct: 426 EECIRVFEQHRADGLKLDRILVAIMINVYGKAR 458
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+R+QK+ +E L P + Y +I ++ + + A M+ C D+
Sbjct: 35 MRVQKWVALEILVDEMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDI 94
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++I + + S+A++YFS+LK+ G P Y ++ G + K + KE
Sbjct: 95 VIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKE 154
Query: 466 AEMAGFKLDK 475
AG K D+
Sbjct: 155 MREAGIKPDQ 164
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 6/214 (2%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDD 330
+ K GN A K KD G + D Y ++ K N DK + + E G + D
Sbjct: 104 YGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPD 163
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
Q + ++ + + + + F SG P V Y TLIH+ +A
Sbjct: 164 ----QVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQAT 219
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V + S CL D + +I+++ +A+ +KE G P Y ++ F
Sbjct: 220 LVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAF 279
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
M + + + +E + + + + T + +L +
Sbjct: 280 MRANQPMGAIKLFEEMQESNCRFGESTYITMLNV 313
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 341 IMKVGIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
++K I +F + HWF+ G P +V+Y LI +A+ ++
Sbjct: 65 VIKEAINTGRFQTAQ---HWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLK 121
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
L D Y V+ + +I + +++EAG P Y +I +F +GR
Sbjct: 122 DEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHE 181
Query: 458 KCRDVCKEAEMAGF 471
+E +M+G+
Sbjct: 182 DAAATFRELQMSGY 195
>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Glycine max]
Length = 618
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 12/293 (4%)
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHH-ELKVPFKLENFVSLA 261
+R LG + ++ K H P ++ S ++VL + ++ F ++ ++
Sbjct: 112 IRGLGRARMTRTVIKVLDLVYK-FHGSPSLKIFNSILDVLVKEDIDMAREFYRKSMMASG 170
Query: 262 SKG---VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLV 318
+G KG + +KLL + K G + +Y L+ L +N K
Sbjct: 171 VEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRN-GKVGRA 229
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
L++E+ +D+ + + K G +Q ++E F G P VV T ++
Sbjct: 230 RNLMNEMEDPNDVTFNIL-ISGYCKEGNSVQALVLLEKSFSM----GFVPDVVSVTKVLE 284
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ + EA V+ +E+ L D+ AY +IK F + + + +++ G P
Sbjct: 285 ILCNAGRTMEAAEVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLP 344
Query: 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ-IEKESRI 490
D Y +I F SG L D+ + + G K + T L++ + E RI
Sbjct: 345 NVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERI 397
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 350 KFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G +E ++ G P++++Y L+H + REA+ ++ M A+NC F +P
Sbjct: 463 KKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNC-FPIP 521
Query: 407 A-YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+ + VI F + A++ + G P + Y +I + +G L K V
Sbjct: 522 STFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQV 578
>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 426
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E + AG D + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL++ M CL DL ++I ++
Sbjct: 101 LISEMKTAGVTPDTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|297789717|ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata]
gi|297308523|gb|EFH39054.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata]
Length = 378
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+R +L + +++ V R + F ++ + + +G P+V ++ S + K
Sbjct: 104 RRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKL 163
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
RE VV NM AY +I F A+N + F +++E G+ PT ++ +
Sbjct: 164 REGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQMQELGYEPTVHLFTTL 223
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
IR F GR+ + EM LD V+ + I+ ++G +
Sbjct: 224 IRGFAKEGRVDSALSLLD--EMKSSSLDADIVLYNVCIDSFGKVGKV 268
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G +PTV ++TTLI E + AL+++ M++S+ D+ Y V I F
Sbjct: 203 ALFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 262
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + A ++F +++ G P Y MI + + RL
Sbjct: 263 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRL 303
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V+ YT+L+ + +AL + M+ D+PAY +I F +++
Sbjct: 612 NGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMES 671
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A FS+L E G P+ +Y +I F G + D+ K+ G + D T L+
Sbjct: 672 ASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLI 730
>gi|242042129|ref|XP_002468459.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
gi|241922313|gb|EER95457.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
Length = 790
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V F+ G P+VV + ++IH + + ++V ME C D Y ++I
Sbjct: 269 VSDTFNQMLREGVAPSVVTFNSMIHVWGKHHRMEQVASLVRMMEEFQCFPDTRTYNILIA 328
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
L+ NDI A Y+ K+K P R ++ + G + K + KE + GF +
Sbjct: 329 LYRESNDIDIAEYYYCKMKGENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDERGFVV 388
Query: 474 DKQT 477
D+ T
Sbjct: 389 DEYT 392
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y+ +I S R A + M S D+ Y ++I + + ++ +A YF +K
Sbjct: 529 YSVVISSFAKIGDLRMAEYLFREMVMSGVRPDVFVYSILIDAYAEVGNVQQASAYFGLMK 588
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ G C IY +I+++ G +A+ R+ K
Sbjct: 589 KDGLCENVTIYNSLIKLYTKVGYVAEARETYK 620
>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
Length = 704
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/221 (18%), Positives = 100/221 (45%), Gaps = 7/221 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLLDELGQRD 329
+ + GN+ +A+ L A+ +DP+ ++ +I G N D + V + +G +
Sbjct: 258 AYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKP 317
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
NL +C ++ R ++ +++++ +G P+ Y +L+ + + +A
Sbjct: 318 --NLVIYNC--LLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDA 373
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-PTYDIYRDMIR 448
L V M+ ++ Y ++ + + ++ A+ F +K +G C P + MI
Sbjct: 374 LIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMIT 433
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
I+ G++++ ++ + AGF + + L+Q +++
Sbjct: 434 IYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAK 474
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 12/217 (5%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-----LELGKNPDKYMLVMTLLDELG 326
G G + A +L + G ++P++Y + ++G+ D LV ++
Sbjct: 276 GLCNEGRIGEAMDMLEEMTEKG--IEPTVYTYTVPISSLCDIGRVDDAINLVRSM----- 328
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ + S Q TAI+ R K + ++H G P V Y LI+ +E +
Sbjct: 329 GKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRF 388
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
AL + ME L + Y +IK ++DI +A+ F+K+ + G PT Y +
Sbjct: 389 GIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTL 448
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
I + G L + + + D++T EL+
Sbjct: 449 IVENLKRGYLNNATRFLYMMKESNCEPDERTYCELIS 485
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 2/189 (1%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A G + G ++LA + G + + Y LI EL ++ + + + D +
Sbjct: 342 AIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELC-TEGRFGIALKIFDWMEG 400
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
L + Q I+K + +F+ G PTVV Y TLI L
Sbjct: 401 HGTL-ANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLN 459
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
A ++ M+ SNC D Y +I F + A +F ++ + G P Y MI
Sbjct: 460 NATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMI 519
Query: 448 RIFMASGRL 456
+ G++
Sbjct: 520 DGYCKEGKI 528
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 67/184 (36%), Gaps = 6/184 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF KGG L A G + Y +I K K + ++L + + + +
Sbjct: 486 GFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKE-GKIDVALSLFERM-EENGC 543
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ S + AI+ + +F E T G P + YT+LI+ A
Sbjct: 544 SASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFK 603
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ ME NCL + Y +I + A R L E G PT D Y ++
Sbjct: 604 IFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER----LTENGCEPTIDTYSTLVSGLC 659
Query: 452 ASGR 455
GR
Sbjct: 660 REGR 663
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 19/284 (6%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS VR LG+ + +A+ F + K P + S + +L + + +L N
Sbjct: 129 LSDVVRMLGNAKMVRQAITIF-YQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYN-- 185
Query: 259 SLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
++++G A F K G A +LL K+ G IY LI K
Sbjct: 186 EMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKF 245
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---P 368
D + ++L +E+ + + D ++ L K G ++ +H+F R+ P
Sbjct: 246 NDAHG-ALSLFEEMRHQ----YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP 300
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRY 427
V +I+ + +A+ + ME C+ + Y +IK LF + + S +
Sbjct: 301 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSW 360
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F ++KE+G P+ Y +I F + R+ K + +E + GF
Sbjct: 361 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 404
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 8/215 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L L EL +++
Sbjct: 382 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK-AKRYDLACELFQEL--KENC 438
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
S A+M L K G ++ ++F G P V Y L+ E
Sbjct: 439 GSSSARVYAVMIK--HLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDE 496
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
AL+ + M+ C+ D+ +Y +++ RA+ S +K++ P Y ++
Sbjct: 497 ALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLG 556
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + KE GF+ D T +L+
Sbjct: 557 ALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILE 591
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V +T LI + + K REA+ +V + + D Y ++K F L+ S AI
Sbjct: 227 PDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGV 286
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ K+KE G P Y +I SGR+ + R K AG++ D T L+
Sbjct: 287 YKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTSLMN 342
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
GF K G+ + A AK + L+ SIY K+I + N ++ ++ ++E G
Sbjct: 386 GFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDA 445
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + V +K G+V +F G PTVV Y LI+ K +A
Sbjct: 446 PIAIYHTMMDGYTMVAD--EKKGLV--VFKRLKECGFTPTVVTYGCLINLYTKVGKISKA 501
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L V M+ +L Y ++I FV L D + A F + + G P +Y ++I
Sbjct: 502 LEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISA 561
Query: 450 FMASGRLAKCRDVCKEAE 467
F G + + KE +
Sbjct: 562 FCGMGNMDRAIQTVKEMQ 579
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R + P+ IY LI +G++ D+ + + + E G L T + VG
Sbjct: 335 ARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSL------VTYSVIVG-GF 387
Query: 349 QKFGVVESLFHWFTHSGRDPTVV---MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G E+ +WF + R + +Y +I++ A +V ME +
Sbjct: 388 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPI 447
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + D + + F +LKE GF PT Y +I ++ G+++K +V +
Sbjct: 448 AIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRV 507
Query: 466 AEMAGFKLDKQT 477
+ G K + +T
Sbjct: 508 MKEEGVKHNLKT 519
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PTV + LI+ + +++ +A+ ++ M + + Y +++ +
Sbjct: 609 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 668
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ D +A YF++L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 669 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK--EMSARNIPRN 726
Query: 477 TVVELLQIEKESRIGTI 493
+ V + I+ +R G +
Sbjct: 727 SFVYNILIDGWARRGDV 743
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363
L ++GK K + V ++ E G + +L +K+ F V E +
Sbjct: 491 LYTKVGK-ISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VK 545
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV---VIKLFVALND 420
G P V++Y +I + A+ V M+ L P R +I + D
Sbjct: 546 EGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK---LRHRPTTRTFMPIIHGYAKSGD 602
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ R++ F ++ G PT + +I + ++ K ++ E +AG ++ T +
Sbjct: 603 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 662
Query: 481 LLQ 483
++Q
Sbjct: 663 IMQ 665
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD-- 329
G G A K+ D G +D Y L+ L +N D +TL +LG D
Sbjct: 659 GLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN-DLTDEAITLFHKLGAMDCK 717
Query: 330 -DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + A+ KV R + LF + SG P V Y +IH+ L E E
Sbjct: 718 FDITILNTVINALYKVRRREE----ANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEE 773
Query: 389 ALTVVWNMEASNCLFDLPAYRV---VIKLFVALNDISRAIRYFSKL 431
A T+ +ME S C P+ R+ +I++ + DI +A Y SK+
Sbjct: 774 ADTMFSSMEKSGC---APSSRLLNDIIRMLLQKGDIVKAGYYMSKV 816
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+F + +LFH G + LI + EA+ V M+ D+ Y
Sbjct: 419 RFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYS 478
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+I F + ++ A+ FS++ G P +Y +I F G L K +++ E
Sbjct: 479 TLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSE 534
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM--EASNCLFDLPAYRVV 411
V+ L H + G P + Y T+I S + + +EAL +V M E C D+ ++ V
Sbjct: 211 VDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTV 270
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
I F ++S+A +++ + G P Y ++ + + K V ++ G
Sbjct: 271 IHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGV 330
Query: 472 KLDKQTVVELLQ 483
+ D T ++
Sbjct: 331 EPDGLTYTAIIH 342
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 118/284 (41%), Gaps = 19/284 (6%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS VR LG+ + +A+ F + K P + S + +L + + +L N
Sbjct: 162 LSEVVRMLGNAKMVSKAIAIF-YQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYN-- 218
Query: 259 SLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
++++G A F K G A +LL KD G IY L+ K
Sbjct: 219 EMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKL 278
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---P 368
D + ++L +E+ + + D ++ L K G ++ +H+F R+ P
Sbjct: 279 NDVHG-ALSLFEEMRHQ----YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP 333
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRY 427
++ +I+ + +A+ + M C+ + Y +IK LF + + S +
Sbjct: 334 DTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F ++KE+G P+ Y +I F + R+ K + +E + GF
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 437
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDP--TVVMYTTLIHSRLSEKKCREALTVVWNME 397
+M G LQ V GR P VV++ T+I L+E K EA + M
Sbjct: 279 GVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMG 338
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
C D Y +++ L IS A+R ++++ GF P Y ++ F +G
Sbjct: 339 LKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398
Query: 458 KCRDVCKEAEMAGFKLDKQ 476
R + +E G L+ Q
Sbjct: 399 DTRALLEEMSAKGLTLNSQ 417
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 52/130 (40%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E +F G + Y T+IH+ L + + ++A+ + M C D+ +Y +IK
Sbjct: 470 AEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIK 529
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ R++ ++ E G P Y +I R+ ++ K+ G
Sbjct: 530 AMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAP 589
Query: 474 DKQTVVELLQ 483
D T L+
Sbjct: 590 DIVTYNTLIN 599
>gi|242063818|ref|XP_002453198.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
gi|241933029|gb|EES06174.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
Length = 393
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
++ +L + G R D +L A+MK + G V +F G DP +V Y TLI
Sbjct: 187 ILPVLRDHGVRADAHLYN----ALMKAHVAADDPGAVLRVFRQMKDDGVDPDLVTYNTLI 242
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
R+A + M A L D+ Y ++ D A++ +++ G
Sbjct: 243 FGLARAGMVRKARAFIHAMAAEGHLPDVITYTSLMNGMCVQGDALGALKLLEEMEAEGCQ 302
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
P Y ++ + +L K +V K AG KLD
Sbjct: 303 PNERTYNTLLMGLCKNKKLDKAVEVYKSMVGAGMKLD 339
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 6/204 (2%)
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE--LGKNPDKYMLV 318
A +G L A A G L+ +L V +D G D +Y L+ +P + V
Sbjct: 163 APRGALLALADVVCHRGGLREISSILPVLRDHGVRADAHLYNALMKAHVAADDPGAVLRV 222
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+ + G DL + + G+ + + H G P V+ YT+L++
Sbjct: 223 FRQMKDDGVDPDLVTYNTLIFGLARAGMVRK----ARAFIHAMAAEGHLPDVITYTSLMN 278
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ AL ++ MEA C + Y ++ + +A+ + + AG
Sbjct: 279 GMCVQGDALGALKLLEEMEAEGCQPNERTYNTLLMGLCKNKKLDKAVEVYKSMVGAGMKL 338
Query: 439 TYDIYRDMIRIFMASGRLAKCRDV 462
Y +R SG +A +V
Sbjct: 339 DSPAYASYVRALCRSGSVADAYEV 362
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
GF K G+ + A AK + L+ SIY K+I + N ++ ++ ++E G
Sbjct: 388 GFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDA 447
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + V +K G+V +F G PTVV Y LI+ K +A
Sbjct: 448 PIAIYHTMMDGYTMVAD--EKKGLV--VFKRLKECGFTPTVVTYGCLINLYTKVGKISKA 503
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L V M+ +L Y ++I FV L D + A F + + G P +Y ++I
Sbjct: 504 LEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISA 563
Query: 450 FMASGRLAKCRDVCKEAE 467
F G + + KE +
Sbjct: 564 FCGMGNMDRAIQTVKEMQ 581
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R + P+ IY LI +G++ D+ + + + E G L T + VG
Sbjct: 337 ARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSL------VTYSVIVG-GF 389
Query: 349 QKFGVVESLFHWFTHSGRDPTVV---MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G E+ +WF + R + +Y +I++ A +V ME +
Sbjct: 390 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPI 449
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + D + + F +LKE GF PT Y +I ++ G+++K +V +
Sbjct: 450 AIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRV 509
Query: 466 AEMAGFKLDKQT 477
+ G K + +T
Sbjct: 510 MKEEGVKHNLKT 521
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PTV + LI+ + +++ +A+ ++ M + + Y +++ +
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 670
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ D +A YF++L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 671 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK--EMSARNIPRN 728
Query: 477 TVVELLQIEKESRIGTI 493
+ V + I+ +R G +
Sbjct: 729 SFVYNILIDGWARRGDV 745
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363
L ++GK K + V ++ E G + +L +K+ F V E +
Sbjct: 493 LYTKVGK-ISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VK 547
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV---VIKLFVALND 420
G P V++Y +I + A+ V M+ L P R +I + D
Sbjct: 548 EGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK---LRHRPTTRTFMPIIHGYAKSGD 604
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ R++ F ++ G PT + +I + ++ K ++ E +AG ++ T +
Sbjct: 605 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 664
Query: 481 LLQ 483
++Q
Sbjct: 665 IMQ 667
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
GF K G+ + A AK + L+ SIY K+I + N ++ ++ ++E G
Sbjct: 388 GFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDA 447
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + V +K G+V +F G PTVV Y LI+ K +A
Sbjct: 448 PIAIYHTMMDGYTMVAD--EKKGLV--VFKRLKECGFTPTVVTYGCLINLYTKVGKISKA 503
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L V M+ +L Y ++I FV L D + A F + + G P +Y ++I
Sbjct: 504 LEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISA 563
Query: 450 FMASGRLAKCRDVCKEAE 467
F G + + KE +
Sbjct: 564 FCGMGNMDRAIQTVKEMQ 581
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R + P+ IY LI +G++ D+ + + + E G L T + VG
Sbjct: 337 ARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSL------VTYSVIVG-GF 389
Query: 349 QKFGVVESLFHWFTHSGRDPTVV---MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G E+ +WF + R + +Y +I++ A +V ME +
Sbjct: 390 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPI 449
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + D + + F +LKE GF PT Y +I ++ G+++K +V +
Sbjct: 450 AIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRV 509
Query: 466 AEMAGFKLDKQT 477
+ G K + +T
Sbjct: 510 MKEEGVKHNLKT 521
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PTV + LI+ L EK R+A+ ++ M + + Y +++ +
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLING-LVEK--RQAVEILDEMTLAGVSANEHTYTKIMQGYA 667
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ D +A YF++L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 668 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK--EMSARNIPRN 725
Query: 477 TVVELLQIEKESRIGTI 493
+ V + I+ +R G +
Sbjct: 726 SFVYNILIDGWARRGDV 742
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 8/176 (4%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
A+KL G +LD Y LI L+ GK P + T+ + D + LS
Sbjct: 254 AYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM-I 312
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+ K G + G +F G P V+Y+ LIH +K AL ++ M+
Sbjct: 313 DGLCKAG----RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 368
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ C D Y ++I D+ A +F ++ EAG P Y ++ F +G
Sbjct: 369 AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAG 424
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 80/210 (38%), Gaps = 2/210 (0%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A G K G L+ A LL D G D Y LI LGK + L E+
Sbjct: 205 ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE-AYKLFKEMAL 263
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R L L TA+++ ++ K S++ T G P VV +T+I +
Sbjct: 264 RG-LVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIG 322
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
A+ + +MEA + Y +I + A+ +++K+A P Y +I
Sbjct: 323 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 382
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
SG + R E AG K D T
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAGCKPDVYT 412
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 94/251 (37%), Gaps = 14/251 (5%)
Query: 249 KVPFKLENFVSLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
K+P + ++ S+G L G K G + A ++ + G + +Y+
Sbjct: 285 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 344
Query: 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES---LFH 359
LI L K K + +L ++ + D + L K G VE+ F
Sbjct: 345 ALIHGLCK-ARKMDCALEMLAQMKKA----FCTPDTITYNILIDGLCKSGDVEAARAFFD 399
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
+G P V Y L+ A V +M +S+C ++ Y +I
Sbjct: 400 EMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRR 459
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
+++A YF +KE G P +Y ++ SG+L + E E +G +
Sbjct: 460 QLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTR 519
Query: 480 ELLQIEKESRI 490
+ + K +R+
Sbjct: 520 LIFHLCKANRV 530
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 16/207 (7%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G + A G +D Y ++ L KN K + L++++
Sbjct: 139 GLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNK-KIQDAVALMEKI------ 191
Query: 332 NLSQQDCT-------AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ CT A++ ++ + L +G P VV YT+LI EK
Sbjct: 192 --TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 249
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ EA + M + D Y +I+ + I +A + + G P
Sbjct: 250 RSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLS 309
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGF 471
MI +GR+ + K E G
Sbjct: 310 TMIDGLCKAGRIGAAVRIFKSMEARGL 336
>gi|297823723|ref|XP_002879744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325583|gb|EFH56003.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 444
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ- 335
G + A +L+ + ++DP +Y+ L+ + K+ D + D +G +DL ++
Sbjct: 184 GEVDCATELVRYMSEDSVIVDPRLYSLLLSSVCKHKDS-----SCFDVIGYLEDLRKTRF 238
Query: 336 ----QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+D T +M+ + + V S+ + DP VV YT ++ ++++ +A
Sbjct: 239 LPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRIDPDVVCYTIVLLGVIADEDYPKADK 298
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ + D+ Y V I NDI AI+ S + + G P Y +I+ +
Sbjct: 299 LFDELLLLGLDPDVYTYNVYINGLCKQNDIEGAIKMMSSMNKLGSEPNVVTYNIVIKGLV 358
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQT 477
+G L++ + + KE EM G + T
Sbjct: 359 KAGDLSRAKTLWKEMEMNGVNRNSHT 384
>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 426
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG D + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPDTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|307110307|gb|EFN58543.1| hypothetical protein CHLNCDRAFT_140648 [Chlorella variabilis]
Length = 877
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 303 KLILELGKNPDKY---MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359
KL+ LG+N + +++ L E+G R D L CT +M+V + + SL+
Sbjct: 143 KLVAALGRNKSTWRRALMLHEWLLEIGYRPDDRL----CTTLMRVCAQHGQAATALSLYD 198
Query: 360 WFTHSGRD------PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
W G + P+V YT + + L+ AL V + A+ C D +I+
Sbjct: 199 WMRTPGEEGGGGLTPSVFTYTAAMRAALTGSMMDRALQVWEDALAAKCEVDCRLCTTLIE 258
Query: 414 LFVALNDISRAIRYFSKL----KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
+ D RA+ ++++ K++ P+ Y +R GR + + + A
Sbjct: 259 VCGRKGDTDRALAAYAQMRSSPKDSRMAPSVHAYTAAMRAASEGGRWEAALSIWDDMQAA 318
Query: 470 GFK 472
G K
Sbjct: 319 GCK 321
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%)
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G+ K E L + G PTV+ +T LI+ ++ +AL V NM +SNC D
Sbjct: 363 GLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLD 422
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L AY V+I + + + A +++ G P IY +I + G + +V K
Sbjct: 423 LQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFK 482
Query: 465 EAEMAG 470
E G
Sbjct: 483 LMEHEG 488
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 18/208 (8%)
Query: 255 ENFVSLASKGVL------EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL 308
E + L KGV+ + GF K GN A L+ + G D Y+ L+ L
Sbjct: 581 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQAL 640
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDC-----TAIMKVGIRLQKFGVVESLFHWFTH 363
K L + L D + +S C T I+ I+ K +SLF+
Sbjct: 641 CKQKK-------LNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMIS 693
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG P+ YT I S + EA ++ ME D+ Y + I + + R
Sbjct: 694 SGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDR 753
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
A ++ +A P Y +++ F+
Sbjct: 754 AFSTLKRMVDASCEPNCWTYWLLLKHFL 781
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T+I+ ++ G +F H G P Y +LI+ + +KK +A+ ++ M+
Sbjct: 462 TSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQE 521
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ AY +I+ ++ A R F +++ G P Y + SGR
Sbjct: 522 DGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGR 578
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
R+ D + K +LE G PD ++ +++D L + D + + +
Sbjct: 565 ARVRDGCMLLKTMLERGVTPDA-IVYTSVIDGLCKSDSYDEAYE---------------- 607
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
L+ +G PTVV Y L+ + EA+ ++ ME+ CL D Y V
Sbjct: 608 ----LYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVF 663
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F + +A R F +K G PT +Y ++ +A ++ + ++ +EA AG
Sbjct: 664 DGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGAD 723
Query: 473 LDKQTVVELLQ 483
+D + L Q
Sbjct: 724 VDPEISRTLQQ 734
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 13/195 (6%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG----KNPDKYMLVMTLLDELGQR 328
F K G L LA++L + D G + P IY I+ G D ++ + E G
Sbjct: 386 FCKVGQLDLAYELFQLMTDRGCL--PDIYTYNIMISGACRANRIDDARQLLERMTEAGCP 443
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + + K + + V E L + G VV +TLI ++ +
Sbjct: 444 PDVVTYNSIVSGLCKASQVDEAYEVYEVL----RNGGYFLDVVTCSTLIDGLCKSRRLDD 499
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A ++ ME + D+ AY ++I F + + +++ +FS++ + G PT Y +I
Sbjct: 500 AEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVID 559
Query: 449 IFMASGRLAKCRDVC 463
S R+ RD C
Sbjct: 560 KLCKSARV---RDGC 571
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA+++ ++ ++ +F G P + Y T+I +EAL V+ NM A
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
C+ Y +++ + RA F + +GF P IY +I F SGR+ +
Sbjct: 289 KACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKE 348
Query: 459 CRDVCKEAEMAGFKLDKQT 477
+ E AG++ D T
Sbjct: 349 ACSLFDEMVEAGYRPDVIT 367
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 19/252 (7%)
Query: 221 WAQKQPHLFPDDRLLAST-VEVLARHHELKVPFK-LENFVSLA------SKGVLEATAKG 272
+ Q + FP D + +T ++ LA+ + K L+N ++ A + G+L
Sbjct: 248 FGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGIL---VNS 304
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---GQRD 329
K G L+ A +L V G + IY LI K+ + +L DE+ G R
Sbjct: 305 LCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS-GRMKEACSLFDEMVEAGYRP 363
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D+ + K G F F G P VV YTT+I + A
Sbjct: 364 DVITHTVMIDGLCKSG----NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
++ M A C D Y ++ F L + A + +L + P +Y +++
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKG 479
Query: 450 FMASGRLAKCRD 461
G + D
Sbjct: 480 LCDGGSVENTLD 491
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E LF SG P V+YT+LIH + +EA ++ M + D+ + V+I
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ +A + F ++ G P Y +I+ GR+A + K G
Sbjct: 374 GLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFP 433
Query: 474 DKQTVVELL 482
D T + LL
Sbjct: 434 DSVTYICLL 442
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA+++ ++ ++ +F G P + Y T+I +EAL V+ NM A
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
C+ Y +++ + RA F + +GF P IY +I F SGR+ +
Sbjct: 289 KACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKE 348
Query: 459 CRDVCKEAEMAGFKLDKQT 477
+ E AG++ D T
Sbjct: 349 ACSLFDEMVEAGYRPDVIT 367
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 19/252 (7%)
Query: 221 WAQKQPHLFPDDRLLAST-VEVLARHHELKVPFK-LENFVSLA------SKGVLEATAKG 272
+ Q + FP D + +T ++ LA+ + K L+N ++ A + G+L
Sbjct: 248 FGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGIL---VNS 304
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---GQRD 329
K G L+ A +L V G + IY LI K+ + +L DE+ G R
Sbjct: 305 LCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS-GRMKEACSLFDEMVEAGYRP 363
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D+ + K G F F G P VV YTT+I + A
Sbjct: 364 DVITHTVMIDGLCKSG----NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
++ M A C D Y ++ F L + A + +L + P +Y ++
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNG 479
Query: 450 FMASGRLAKCRD 461
G + K D
Sbjct: 480 LCDGGSVEKTLD 491
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E LF SG P V+YT+LIH + +EA ++ M + D+ + V+I
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ +A + F ++ G P Y +I+ GR+A + K G
Sbjct: 374 GLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFP 433
Query: 474 DKQTVVELL 482
D T + LL
Sbjct: 434 DSVTYICLL 442
>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
Length = 541
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 3/181 (1%)
Query: 268 ATAKGFVKGGNLKLAWKLLM-VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326
A +GG++ LA + L + + G D + Y + + D + +LD +
Sbjct: 256 ALIDALCRGGDVALAQEQLKDMQRSRGLAPDAATYGPFLRSACASKDARA-ALRVLDRMR 314
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
R L + A++++ L + ++ + G P V Y TL+++ K+
Sbjct: 315 ARS-LTPNVFTYNAVIRLLCELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEV 373
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+AL ++ M+ CL + +Y +++K+ +A+ + RAI + +++ GF P Y M
Sbjct: 374 NKALRLISRMDEGLCLPNRHSYNMILKMLIAIGRVDRAIEVWDGMEKRGFHPGAATYAVM 433
Query: 447 I 447
I
Sbjct: 434 I 434
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 12/221 (5%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDE 324
A F K G +A L + G LD LI ++GK D ++ TL+
Sbjct: 481 AIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKM 540
Query: 325 --LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
L LN+ + KV L G + L G P+VV YTTL+ +
Sbjct: 541 RILTTPHSLNVILDMLSKGCKVKEELAMLGKINKL-------GLVPSVVTYTTLVDGLIR 593
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ ++ M+ S CL ++ Y ++I + A + S ++++G P +
Sbjct: 594 SGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
Y M++ ++ +G+L + + + G++L+ + LLQ
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQ 694
>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 658
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
Query: 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD 367
L + PD + + LLD + + + S +++ +R +++ + LF G
Sbjct: 109 LSREPD-WQRALALLDWINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLS 167
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI S +L + ME N DL Y +I L L+D S+AI
Sbjct: 168 PDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISI 227
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
FS+LK + P Y MI +F + + R + +E + D + LL I
Sbjct: 228 FSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAI 284
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P V Y+TL+ + +K EAL++ + M + C DL ++I ++ L+ A R
Sbjct: 273 PDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRL 332
Query: 428 FSKLKEAGFCPTYDIYRDMIRIF 450
F +++ G P Y ++R++
Sbjct: 333 FWSMRKMGIQPNVVSYNTLLRVY 355
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 8/198 (4%)
Query: 257 FVSLASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
F SL ++G+ + G K G + +AWK L G D Y+ I L K
Sbjct: 310 FDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 369
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
++ + E+ Q+D + S + T ++ ++ + +G+V + SG +P V
Sbjct: 370 MKGS-QEGLSFIGEMLQKD-VKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDV 427
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V YTT + + E + EA V+ M + D AY ++ ++ A+ +
Sbjct: 428 VTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQ 487
Query: 431 LKEAGFCPTYDIYRDMIR 448
+ P Y ++R
Sbjct: 488 MTSVASVPNQFTYFILLR 505
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 21/256 (8%)
Query: 225 QPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFV----KGGNLK 280
Q L PD ++ + +L+ F +FV + E T + + G+++
Sbjct: 198 QKGLQPDAVTYNILIDAFGKTGQLERAF---DFVGKSRSFTNEVTYNSLLSSLGRKGDIQ 254
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELG---KNPDKYMLVMTLLDELGQRDDLNLSQQD 337
+L K G + + YA LI LG + D + L + ++D N + D
Sbjct: 255 GLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVD--------NDIKYD 306
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
I V L K G VE+ F F G + V Y LI+ K A ++
Sbjct: 307 IVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLL 366
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
ME + C ++ Y +I + +++S A R F ++KE G P Y +I F +G
Sbjct: 367 EMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAG 426
Query: 455 RLAKCRDVCKEAEMAG 470
R + +E + G
Sbjct: 427 RTDAAISLFREMKAEG 442
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 2/176 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D Y+ L L +N D ++ L ++ + + C+ ++ + K + E
Sbjct: 300 DGFTYSILFDGLSRNGDSKAMLSLFGKSL--KNGVTIGDYTCSILLNGLCKDGKVSIAEE 357
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ ++G PT V+Y TLI+ + A + M++ + D Y +I
Sbjct: 358 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC 417
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
I+ A ++++ G PT + + +I + +G+L KC V E + G K
Sbjct: 418 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 473
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 150/381 (39%), Gaps = 23/381 (6%)
Query: 126 PLPLPLPHRLRPLELPTPKKRVCLA-SSRASICKQVYKNPSFLI----------SLARDI 174
P P+ LP R + + +K A +RA + V NPS ++ +L +
Sbjct: 27 PFPI-LPSHRRLVSFSSDRKAYSGAWKARAKPKELVLGNPSVVVEKGKYSYDVETLINKL 85
Query: 175 KGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRL 234
L +A LD L + +E +R+L+ F Q+Q P++ +
Sbjct: 86 SSLPPRGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHI 145
Query: 235 LASTVEVLARHHELKVPFKL--ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDG 292
+ +L R L+ + E S+ V TA G N K L ++ +
Sbjct: 146 YTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMK 205
Query: 293 GRMLDPSI--YAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIR 347
+ PSI Y +I + + ++ L E+ G + D+ A G+
Sbjct: 206 KERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLG 265
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
+ E +F G P + YT L+ + + + ++ M ++ + ++ +
Sbjct: 266 DE----AEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISS 321
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y V+++ + + +I A F ++EAG P + Y ++ ++ GR + R++ E +
Sbjct: 322 YNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMK 381
Query: 468 MAGFKLDKQTVVELLQIEKES 488
++ + D T L+ + E
Sbjct: 382 VSNTEPDAATYNTLIDVFGEG 402
>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
Length = 413
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 3/182 (1%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
+ G + A+K+L D R + + Y LI L K+ D+ + E + D + +
Sbjct: 4 RAGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIF--ERMKHDRVAPT 61
Query: 335 QQDCTAIMKVGIRLQKFGVVESLF-HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
TA+M+ +Q + +F H P V MY T++ + K L
Sbjct: 62 LYTYTAVMRALSHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTW 121
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M+ C+ ++ Y +++ FV N A+ ++++ G T IYR ++ +
Sbjct: 122 ERMQKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQ 181
Query: 454 GR 455
GR
Sbjct: 182 GR 183
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 8/222 (3%)
Query: 257 FVSLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
F+ + KG A G V G + +A + + G + D ++Y L+ L K
Sbjct: 403 FIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCK 462
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
+ L++ L Q +L+L ++ IR K + LF G DP V
Sbjct: 463 KGRLSAAKLLLVEMLHQ--NLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGV 520
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V Y +I +ALT V M+ + D Y +I +V ND+ A++ F +
Sbjct: 521 VGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQ 580
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ + P Y +I F +G ++ +E +G K
Sbjct: 581 MVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLK 622
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 12/226 (5%)
Query: 257 FVSLASKGVLEATA------KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
F L KG L T G K N K LL+ K+ G ++ +Y ++ K
Sbjct: 263 FKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIK 322
Query: 311 NPDKYMLVMTL--LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
+ K + TL + E G D+ ++ R K E L G P
Sbjct: 323 HGCKIEVGKTLRWITENGCEPDITTYN----TLISGSCRDGKVHEAEELLEHAIKRGLSP 378
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
+ YT LIH + KC A + M DL AY ++ VA ++ A+
Sbjct: 379 NKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVR 438
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
K+ E G P ++Y ++ GRL+ + + E LD
Sbjct: 439 DKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLD 484
>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
Length = 413
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 3/182 (1%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
+ G + A+K+L D R + + Y LI L K+ D+ + E ++D + +
Sbjct: 4 RAGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIF--ERMKQDRVAPT 61
Query: 335 QQDCTAIMKVGIRLQKFGVVESLF-HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
TA+M+ +Q + +F H P V MY T++ + K L
Sbjct: 62 LYTYTAVMRALAHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTW 121
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M C+ ++ Y +++ FV N A+ ++++ G T IYR ++ +
Sbjct: 122 ERMRKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQ 181
Query: 454 GR 455
GR
Sbjct: 182 GR 183
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
GF K G+ + A AK + L+ SIY K+I + N ++ ++ ++E G
Sbjct: 388 GFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDA 447
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + V +K G+V +F G PTVV Y LI+ K +A
Sbjct: 448 PIAIYHTMMDGYTMVAD--EKKGLV--VFKRLKECGFTPTVVTYGCLINLYTKVGKISKA 503
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L V M+ +L Y ++I FV L D + A F + + G P +Y ++I
Sbjct: 504 LEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISA 563
Query: 450 FMASGRLAKCRDVCKEAE 467
F G + + KE +
Sbjct: 564 FCGMGNMDRAIQTVKEMQ 581
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R + P+ IY LI +G++ D+ + + + E G L T + VG
Sbjct: 337 ARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSL------VTYSVIVG-GF 389
Query: 349 QKFGVVESLFHWFTHSGRDPTVV---MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G E+ +WF + R + +Y +I++ A +V ME +
Sbjct: 390 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPI 449
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + D + + F +LKE GF PT Y +I ++ G+++K +V +
Sbjct: 450 AIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRV 509
Query: 466 AEMAGFKLDKQT 477
+ G K + +T
Sbjct: 510 MKEEGVKHNLKT 521
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PTV + LI+ L EK R+A+ ++ M + + Y +++ +
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLING-LVEK--RQAVEILDEMTLAGVSANEHTYTKIMQGYA 667
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ D +A YF++L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 668 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK--EMSARNIPRN 725
Query: 477 TVVELLQIEKESRIGTI 493
+ V + I+ +R G +
Sbjct: 726 SFVYNILIDGWARRGDV 742
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV Y TLI + A +V M+A + + ++IK F I A
Sbjct: 349 PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNV 408
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
K+ E+GF P Y MI + +G++A+ + E G KLD T+ LL
Sbjct: 409 MVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLH 464
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
TL+H+ EK+ +A T+ + D Y +I + RA++ + ++KE
Sbjct: 461 TLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKET 520
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
G T Y +IR SG+ + D E G D+ T
Sbjct: 521 GIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDEST 563
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 4/179 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRD 329
GF K GNL A +L V +P++ + LI L K D+ L+ ++ RD
Sbjct: 219 GFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCK-ADRLEHAFELVKQMKARD 277
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
L T +M + + V +F G +P+VV YTTL+H+ ++A
Sbjct: 278 -LRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDA 336
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
V+ +M A D+ Y V+++ + A +F K+ P +Y ++R
Sbjct: 337 QQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVR 395
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+++ V R + F ++ + + +G P+V ++ S + K RE VV NM
Sbjct: 102 NSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRK 161
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
AY +I F A+N + F +++E G+ PT ++ +IR F GR+
Sbjct: 162 FKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDS 221
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
+ EM LD V+ + I+ ++G +
Sbjct: 222 ALSLLD--EMKSSSLDADIVLYNVCIDSFGKVGKV 254
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G +PTV ++TTLI E + AL+++ M++S+ D+ Y V I F
Sbjct: 189 TLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + A ++F +++ G P Y MI + + RL
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRL 289
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+ LIH + E + ++M+ C+ D AY +VI F +++A +
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
++K GF PT Y +I RL + + +EA+ +L+ V+ I+
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN--VVIYSSLIDGF 667
Query: 488 SRIGTI 493
++G I
Sbjct: 668 GKVGRI 673
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 20/246 (8%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG-VLEATA-----KGFVKGG 277
K PD R + + L + ++L F S+ +G VL+ A GF K G
Sbjct: 544 KSRRFVPDARSYSILIHGLIKAGFANETYEL--FYSMKEQGCVLDTRAYNIVIDGFCKCG 601
Query: 278 NLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDEL-GQRDDLN-- 332
+ A++LL K G +P++ Y +I L K D+ L +E +R +LN
Sbjct: 602 KVNKAYQLLEEMKTKG--FEPTVVTYGSVIDGLAK-IDRLDEAYMLFEEAKSKRIELNVV 658
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
+ KVG + + ++E L G P V + +L+ + + ++ EAL
Sbjct: 659 IYSSLIDGFGKVGRIDEAYLILEELMQ----KGLTPNVYTWNSLLDALVKAEEINEALVC 714
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+M+ C + Y ++I + ++A ++ ++++ G P+ Y MI
Sbjct: 715 FQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774
Query: 453 SGRLAK 458
+G +A+
Sbjct: 775 AGNIAE 780
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 3/186 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF K G + A LL K D +Y I GK K + E+ + +
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGK-VGKVDMAWKFFHEI-EANG 268
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L + T+++ V + + +F + R P Y T+I S K EA
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+++ A + + AY ++ + + A+R F ++K+ P Y +I +
Sbjct: 329 SLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNILIDML 387
Query: 451 MASGRL 456
+G+L
Sbjct: 388 CRAGKL 393
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDP--TVVMYTTLIHSRLSEKKCREALTVVWNME 397
+M G LQ V GR P VV++ T+I L+E K EA + M
Sbjct: 263 GVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMG 322
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
C D Y +++ L I A+R ++++ GF P Y ++ F +G
Sbjct: 323 LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 382
Query: 458 KCRDVCKEAEMAGFKLDKQ 476
R + +E G L+ Q
Sbjct: 383 DTRALLEEMSAKGLTLNSQ 401
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 52/130 (40%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E +F G + Y T+IH+ L + + ++A+ + M C D+ +Y +IK
Sbjct: 454 AEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIK 513
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ R++ ++ E G P Y +I R+ ++ K+ G
Sbjct: 514 AMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAP 573
Query: 474 DKQTVVELLQ 483
D T L+
Sbjct: 574 DIVTYNTLIN 583
>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 587
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 96/270 (35%), Gaps = 21/270 (7%)
Query: 219 FCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL---------ENFVSLASKGVLEAT 269
+ WA QP PD L S + LA+ E + L ++ L S G
Sbjct: 125 YLWALNQPGFKPDSSLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAII 184
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDP----SIYAKLILELGKNPDKYMLVMTLLDEL 325
+ + + G K A + AKD ++D S++ LI L K LL
Sbjct: 185 IRRYARAGMHKAAIRTFEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLL--- 241
Query: 326 GQRDDLNLSQQDCTAIMKVGI----RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
+R + +L + + + R +K E L+ + P+VV Y TL+
Sbjct: 242 -RRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYC 300
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
++ +AL +V M + Y +I A+ + PT
Sbjct: 301 RMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLS 360
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
Y +++ F +G + + K+ GF
Sbjct: 361 TYNSLVKGFCKAGDIEGASKILKKMISRGF 390
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 8/189 (4%)
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
P+ Y LI LGK +Y L L EL +++ S A+M L K G ++
Sbjct: 46 PAAYCSLIDALGK-AKRYDLACELFQEL--KENCGSSSARVYAVMIK--HLGKAGRLDDA 100
Query: 358 FHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ F G P V Y L+ EAL+ + M+ C+ D+ +Y +++
Sbjct: 101 INMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNG 160
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
RA+ S +K++ P Y ++ +G + + KE GF+ D
Sbjct: 161 LAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYD 220
Query: 475 KQTVVELLQ 483
T +L+
Sbjct: 221 LITYSSILE 229
>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Glycine max]
Length = 827
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
ES++ S P V+ YT+LI+ K AL + +M+ D+ Y +I
Sbjct: 591 ESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAG 650
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
F + D+ A ++FSKL E G P +Y MI +
Sbjct: 651 FCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAY 686
>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 426
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
+R
Sbjct: 127 NR 128
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + +K EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDP--TVVMYTTLIHSRLSEKKCREALTVVWNME 397
+M G LQ V GR P VV++ T+I L+E K EA + M
Sbjct: 279 GVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMG 338
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
C D Y +++ L I A+R ++++ GF P Y ++ F +G
Sbjct: 339 LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398
Query: 458 KCRDVCKEAEMAGFKLDKQ 476
R + +E G L+ Q
Sbjct: 399 DTRALLEEMSAKGLTLNSQ 417
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 52/130 (40%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E +F G + Y T+IH+ L + + ++A+ + M C D+ +Y +IK
Sbjct: 470 AEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIK 529
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ R++ ++ E G P Y +I R+ ++ K+ G
Sbjct: 530 AMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAP 589
Query: 474 DKQTVVELLQ 483
D T L+
Sbjct: 590 DIVTYNTLIN 599
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 4/179 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRD 329
GF K GNL A +L V +P++ + LI L K D+ L+ ++ RD
Sbjct: 219 GFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCK-ADRLEHAFELVKQMKARD 277
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
L T +M + + V +F G +P+VV YTTL+H+ ++A
Sbjct: 278 -LRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDA 336
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
V+ +M A D+ Y V+++ + A +F K+ P +Y ++R
Sbjct: 337 QQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVR 395
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 16/260 (6%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGG 277
+ LFP+ + V+ L + +L+ +K+ F S + +G + G K G
Sbjct: 149 EHASLFPNLLTVNIMVDRLCKARKLEEAYKI--FESASQRGCNPDCVTYCSLIDGLGKKG 206
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRDDLNLS 334
+ A++L D G +P +Y LI G+ D + + L+ G + DL L
Sbjct: 207 QVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRR-GCKPDLTLL 265
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ K G ++K ++ F G P V Y+ LIH + RE +
Sbjct: 266 NTYMDCVFKAG-EVEKGRMI---FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 321
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+ D AY V+ F + +A ++KE PT Y ++
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 381
Query: 455 RLAKCRDVCKEAEMAGFKLD 474
RL + + +EA+ G +L+
Sbjct: 382 RLDEAYMLFEEAKSKGIELN 401
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 11/182 (6%)
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES---LFHWFTHSGRDPTV 370
K+ L + D ++ D S D + I V L K G V S LF+ G V
Sbjct: 150 KFDLALCAFDWFMKQKDYQ-SMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDV 208
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL----NDISRAIR 426
YT+LI + + + REA+ V ME C L Y V++ +F + N I+ +
Sbjct: 209 YSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVE 268
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486
K+K G P Y +I + V +E + AGF DK T LL +
Sbjct: 269 ---KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYG 325
Query: 487 ES 488
+S
Sbjct: 326 KS 327
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V YTTL+ K A+ + M + C ++ + IK++
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDM 438
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
++ F ++ G P + ++ +F +G ++ V KE + AGF +++T L I
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL--I 496
Query: 485 EKESRIGTI 493
SR G+
Sbjct: 497 SAYSRCGSF 505
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 4/202 (1%)
Query: 272 GFVKGGNLKL-AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
GF K +L L A+ M KD MLD S+ A +I LGK + L + L Q D
Sbjct: 146 GFHKKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKE-GRVSSAANLFNGL-QEDG 203
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+L T+++ ++ ++F G PT++ Y +++ +
Sbjct: 204 FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKI 263
Query: 391 T-VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
T +V M++ D Y +I + A + F ++K AGF Y ++ +
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDV 323
Query: 450 FMASGRLAKCRDVCKEAEMAGF 471
+ S R + V E E+ GF
Sbjct: 324 YGKSHRPKEAMKVLNEMELNGF 345
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 6/150 (4%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q TA++ RL K V L+H G P V Y LI+ + AL +
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW 398
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
ME L + Y +IK DI +A+ F K+ + G PT Y +I ++ G
Sbjct: 399 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 458
Query: 456 L---AKCRDVCKEAEMAGFKLDKQTVVELL 482
+ A+ D+ KE G + D+ T EL+
Sbjct: 459 VNNAARLLDLMKE---NGCEPDEWTYNELV 485
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 35/220 (15%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGG-------------------RMLDPSIYAKLILELGKN 311
G++ GN+ A +LL + K+ G ++ S Y + ++E G N
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 510
Query: 312 PD---------------KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
P+ K + ++LL + + N + + A++ + +F E
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRFSEAEK 569
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ G P V+ YTTLI + + A + +ME CL +L Y +I
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 629
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
A +++ G P + +I F+ GR+
Sbjct: 630 QEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 669
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 294 RMLDPSIYAK-LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
R+ P+ + + L+++ +N ++ V L+E+ S C ++ I+L KF
Sbjct: 122 RVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMG-FGFSLYSCNTLL---IQLAKFE 177
Query: 353 VVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+VE +L+ +SG P+++ + TLI+ + K REA ++ + + D+ Y
Sbjct: 178 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 237
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+I ++ A F ++ + G P Y +I GR+ + D+ +E
Sbjct: 238 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G PTVV Y TLI+ L++ A ++ M+ + C D Y ++ F
Sbjct: 430 LFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFS 489
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ A YF ++ E G P Y +I G++ + K E G + +
Sbjct: 490 KWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVE 549
Query: 477 TVVELLQ-IEKESR 489
+ ++ + KE+R
Sbjct: 550 SYNAVINGLSKENR 563
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 10/225 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
G K G + A+ L D G + +Y LI + G+ D + + ++ G
Sbjct: 238 GLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMV-HTGCS 296
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
DL L + K G + +LF G P Y+ LIH + E
Sbjct: 297 PDLTLINTYMDCVFKAGETEKG----RALFREINAHGFIPDARSYSILIHGLVKAGLANE 352
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ + M+ C+ D AY VI F +++A + ++K G PT Y +I
Sbjct: 353 TYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVID 412
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G KL+ VV I+ ++G I
Sbjct: 413 GLAKIDRLDEAYMLFEEAKSNGIKLN--VVVYSSLIDGFGKVGRI 455
>gi|414864940|tpg|DAA43497.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
Length = 816
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V F+ G P+VV + ++IH+ + + ++V ME C D Y ++I
Sbjct: 267 VSDTFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNILIA 326
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
L+ +DI A Y+ K+K P R ++ + G + K + KE + GF +
Sbjct: 327 LYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDERGFMV 386
Query: 474 DKQT 477
D+ T
Sbjct: 387 DEYT 390
>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
Length = 832
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 113/286 (39%), Gaps = 15/286 (5%)
Query: 213 ERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE-LKVPFKLENFVSLASK------GV 265
+ AL F WA+KQP P D + L + + + + E V +S G
Sbjct: 182 DAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFGA 241
Query: 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL 325
+ K L++A+ A++ G +D Y L++ L N + + +
Sbjct: 242 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMM-LFLNKGLPYKAFEIYESM 300
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR---DPTVVMYTTLIHSRLS 382
+ D L D + + L K G +++ F F P+ ++++L+ S
Sbjct: 301 EKTDSL----LDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGK 356
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ ++ V M+ + +I + + A+R + ++K++GF P + +
Sbjct: 357 AGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGL 416
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
Y +I SG+L V K+ E AGF T LL++ S
Sbjct: 417 YTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGS 462
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 37/237 (15%)
Query: 254 LENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD 313
+E SL E K G L A+KL K+ R L PS
Sbjct: 300 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKE--RKLRPS-------------- 343
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
+ + +L+D +G+ L+ S MKV + +Q FG P+ M+
Sbjct: 344 -FSVFSSLVDSMGKAGRLDTS-------MKVYMEMQGFG-------------HRPSATMF 382
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
+LI S K AL + M+ S + Y ++I+ + A+ F +++
Sbjct: 383 VSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEK 442
Query: 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRI 490
AGF PT Y ++ + SG++ + AG + + + LL + R+
Sbjct: 443 AGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRL 499
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ + T SG P+VV Y IH ++ EAL VV M D+ +Y +I F
Sbjct: 207 ILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFC 266
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ RA + ++ E G P Y +I+ RL + D+ +E G D+
Sbjct: 267 RKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEF 326
Query: 477 TVVELLQ 483
T L+
Sbjct: 327 TYTTLIN 333
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P V Y LI S + ++ L ME + CL ++ Y +I + + I A
Sbjct: 8 PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ G P Y +I G + + ++ +E GF D+ T LL
Sbjct: 68 LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 8/231 (3%)
Query: 259 SLASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP 312
S++SKG+ G + G++K AW++L G D Y L+ K
Sbjct: 70 SMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEG 129
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
+ + ++ + + R+ ++ S TA++ + + F G P
Sbjct: 130 NFHQALVIHAEMV--RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 187
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
YTTLI + EA ++ M S + Y I L + A+ ++
Sbjct: 188 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 247
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
E G P Y +I F G L + + +E G D T L+Q
Sbjct: 248 EKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 298
>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 426
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P Y+TLI E AL+ + ME DL Y +I+L L D S+A
Sbjct: 4 GLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
I FS+LK +GF P Y MI +F + + R + E + AG + + LL +
Sbjct: 64 ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTM 123
Query: 485 EKESR 489
E++
Sbjct: 124 YVENK 128
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|42570815|ref|NP_973481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251569|gb|AEC06663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 349
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V +T LI + + K REA+ +V + + D Y ++K F L+ S A+
Sbjct: 228 PDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGV 287
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ K+KE G P Y +I +GR+ + R K AG++ D T L+
Sbjct: 288 YKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMN 343
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 130/326 (39%), Gaps = 51/326 (15%)
Query: 177 LDSHKDVAEVLDK-CGRFLRKGSLSFTVRELGHMNL---PERALQTFCWAQKQPHLFPDD 232
LD D+ LD C +FL K S +F L M L P+ AL+ F WA KQ +
Sbjct: 38 LDGPVDMESRLDLFCNKFLIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNL 97
Query: 233 RLLASTVEVLARHHEL----KVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288
+ S+++VLA + +L V K L + + K F G+L + +LL V
Sbjct: 98 QCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSF---GSLGMVEELLWV 154
Query: 289 ---AKDGGRMLDPSIY-----------------AKLILELGKN----PD--KYMLVMTLL 322
K+ G ++PS++ A+ +LE+ +N PD Y ++
Sbjct: 155 WRGMKENG--VEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGY 212
Query: 323 DELGQRDDL----------NLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
++G+ N++ T +++ F + SL+H +G +
Sbjct: 213 CQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPP 272
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
Y+ +I E KC E V M C ++ Y +I ++ A+ F +
Sbjct: 273 HAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFER 332
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRL 456
+K+ G P Y ++ SGRL
Sbjct: 333 MKKEGLEPDVVTYGVVVNCMCKSGRL 358
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 14/197 (7%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DL 331
K G L A + L + G ++ +Y+ LI LGK + L +E+ ++ D
Sbjct: 354 KSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGK-AGRVHEAEKLFEEMVKKGCPPDS 412
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
A+ K G K + F G D TV YT +I+ E K EAL
Sbjct: 413 YCYNALIDALAKCG----KTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALK 468
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALND-ISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+W+M + A + + + L+ ++RA + +L G P + DM+ +
Sbjct: 469 -MWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPE-TAFEDMLNVL 526
Query: 451 MASGRLAKCRDVCKEAE 467
+GR+ ++ CK A+
Sbjct: 527 CKAGRI---KEACKLAD 540
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
M L E+ QR + + T +++ R K V E +F W G P ++ Y L+H
Sbjct: 346 MKLFCEMSQRGVVR-NTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLH 404
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
K +AL ++ +M+ S D+ Y ++I+ +++ A + L G P
Sbjct: 405 GLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTP 464
Query: 439 TYDIYRDMI 447
Y M+
Sbjct: 465 DIWTYTAMM 473
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 16/260 (6%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGG 277
+ LFP+ + V+ L + +L+ +K+ F S + +G + G K G
Sbjct: 281 EHASLFPNLLTVNIMVDRLCKARKLEEAYKI--FESASQRGCNPDCVTYCSLIDGLGKKG 338
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRDDLNLS 334
+ A++L D G +P +Y LI G+ D + + L+ G + DL L
Sbjct: 339 QVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRR-GCKPDLTLL 397
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ K G ++K ++ F G P V Y+ LIH + RE +
Sbjct: 398 NTYMDCVFKAG-EVEKGRMI---FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 453
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+ D AY V+ F + +A ++KE PT Y ++
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 513
Query: 455 RLAKCRDVCKEAEMAGFKLD 474
RL + + +EA+ G +L+
Sbjct: 514 RLDEAYMLFEEAKSKGIELN 533
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L G + V ++TTL+ + E + +AL +V ++ S D+ Y V I F
Sbjct: 67 LLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFG 126
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
++ A ++F +LK G P Y MI + +GRL + ++ + E
Sbjct: 127 KAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 177
>gi|414864941|tpg|DAA43498.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
Length = 788
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V F+ G P+VV + ++IH+ + + ++V ME C D Y ++I
Sbjct: 267 VSDTFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNILIA 326
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
L+ +DI A Y+ K+K P R ++ + G + K + KE + GF +
Sbjct: 327 LYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDERGFMV 386
Query: 474 DKQT 477
D+ T
Sbjct: 387 DEYT 390
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 8/198 (4%)
Query: 257 FVSLASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
F SL ++G+ + G K G +AWK L G D Y+ I L K
Sbjct: 274 FDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 333
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
++ + E+ Q+D + S + T ++ ++ + +G+V + SG +P V
Sbjct: 334 MKGS-QEGLSFIGEMLQKD-VKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDV 391
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V YTT + + E + EA V+ M + D AY ++ ++ A+ +
Sbjct: 392 VTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQ 451
Query: 431 LKEAGFCPTYDIYRDMIR 448
+ P Y ++R
Sbjct: 452 MTSVASVPNQFTYFILLR 469
>gi|334184790|ref|NP_181376.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546769|sp|Q8L6Y7.2|PP193_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g38420, mitochondrial; Flags: Precursor
gi|3395430|gb|AAC28762.1| hypothetical protein [Arabidopsis thaliana]
gi|330254441|gb|AEC09535.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 91/206 (44%), Gaps = 10/206 (4%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ- 335
G + A +L+ ++DP +Y++L+ + K+ D + D +G +DL ++
Sbjct: 193 GEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDS-----SCFDVIGYLEDLRKTRF 247
Query: 336 ----QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+D T +M+ + + V S+ + +P +V YT ++ ++++ +A
Sbjct: 248 SPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADEDYPKADK 307
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ + D+ Y V I NDI A++ S + + G P Y +I+ +
Sbjct: 308 LFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYNILIKALV 367
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQT 477
+G L++ + + KE E G + T
Sbjct: 368 KAGDLSRAKTLWKEMETNGVNRNSHT 393
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 2/176 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D Y+ L L +N D ++ L ++ + + C+ ++ + K + E
Sbjct: 304 DGFTYSILFDGLSRNGDSKAMLSLFGKYL--KNGVTIGDYTCSILLNGLCKDGKVSIAEE 361
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ ++G PT V+Y TLI+ + A + M++ + D Y +I
Sbjct: 362 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC 421
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
I+ A ++++ G PT + + +I + +G+L KC V E + G K
Sbjct: 422 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 477
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + + ++FG++ +L H PTVV Y +IH+ REA+ V ME
Sbjct: 368 TTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEE 427
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D Y +I + + A+ + +++E G P Y M+ G+LA
Sbjct: 428 AGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLA 486
>gi|224287051|gb|ACN41226.1| unknown [Picea sitchensis]
Length = 243
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Query: 319 MTLLDELGQRDDLNLSQQDCT-AIMKVG-IRLQKFGVVESLFHWFTHSGRDPTVVMYTTL 376
+ L+++G+R NLS + AI+ G I L + E LF G P VMY TL
Sbjct: 20 LEYLEKMGER---NLSPNAASYAILMSGYIELGELQEAERLFGSMVAKGCVPDAVMYNTL 76
Query: 377 IHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
++ E +A ++ M D+ Y ++I F L + A++ F ++ E GF
Sbjct: 77 LNKYFREGMIADAERLLDEMVVERRDPDVDTYAMLIDEFSKLGKLEGALKIFGRMMEVGF 136
Query: 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
P +Y + G+L + + + + G K D T L++
Sbjct: 137 KPEVGVYNKWFGVLCKEGKLDEAQKLVQAMVDGGQKADVATYDVLIE 183
>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
origanoides]
Length = 408
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 61 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 TSYSTLLXMYVENK 134
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 107 LISEMKTAGVMPNTTSYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 167 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 6/150 (4%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q TA++ RL K V L+H G P V Y LI+ + AL +
Sbjct: 381 QTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW 440
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
ME L + Y +IK DI +A+ F K+ + G PT Y +I ++ G
Sbjct: 441 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 500
Query: 456 L---AKCRDVCKEAEMAGFKLDKQTVVELL 482
+ A+ D+ KE G + D+ T EL+
Sbjct: 501 VNNAARLLDLMKE---NGCEPDEWTYNELV 527
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 80/211 (37%), Gaps = 8/211 (3%)
Query: 248 LKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-- 305
LK+ +E SLA+ KG GG+++ A L G + Y LI
Sbjct: 435 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 494
Query: 306 -LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS 364
L G N + ++ L+ E G D + + K G K F
Sbjct: 495 YLTKG-NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWG----KLESASFYFQEMVEC 549
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P V YTTLI + K AL+++ ME C ++ +Y VI N S A
Sbjct: 550 GLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEA 609
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ K+ E G P Y +I +GR
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDGLCRNGR 640
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 35/219 (15%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGG-------------------RMLDPSIYAKLILELGKNP 312
G++ GN+ A +LL + K+ G ++ S Y + ++E G NP
Sbjct: 494 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP 553
Query: 313 D---------------KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
+ K + ++LL+ + + N + + A++ + +F E +
Sbjct: 554 NPVSYTTLIDGHSKDGKVDIALSLLERM-EEMGCNPNVESYNAVINGLSKENRFSEAEKI 612
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
G P V+ YTTLI + + A + +ME CL +L Y +I
Sbjct: 613 CDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 672
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
A +++ G P + +I F+ GR+
Sbjct: 673 EGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 711
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 294 RMLDPSIYAK-LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
R+ P+ + + L+++ +N ++ V L+E+ S C ++ I+L KF
Sbjct: 164 RVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMG-FGFSLYSCNTLL---IQLAKFE 219
Query: 353 VVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+VE +L+ +SG P+++ + TLI+ + K REA ++ + + D+ Y
Sbjct: 220 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 279
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+I ++ A F ++ + G P Y +I GR+ + D+ +E
Sbjct: 280 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 335
>gi|22655258|gb|AAM98219.1| unknown protein [Arabidopsis thaliana]
gi|31376375|gb|AAP49514.1| At2g38420 [Arabidopsis thaliana]
Length = 444
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 91/206 (44%), Gaps = 10/206 (4%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ- 335
G + A +L+ ++DP +Y++L+ + K+ D + D +G +DL ++
Sbjct: 184 GEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDS-----SCFDVIGYLEDLRKTRF 238
Query: 336 ----QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+D T +M+ + + V S+ + +P +V YT ++ ++++ +A
Sbjct: 239 SPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADEDYPKADK 298
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ + D+ Y V I NDI A++ S + + G P Y +I+ +
Sbjct: 299 LFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYNILIKALV 358
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQT 477
+G L++ + + KE E G + T
Sbjct: 359 KAGDLSRAKTLWKEMETNGVNRNSHT 384
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 32/261 (12%)
Query: 228 LFPD----DRLLASTVEVLARHHELKVPFKLENFVSLA-SKGVLEATAKGFVKGGNLKLA 282
+FPD D L+ + E H+ L+V F ++ ++ S A G ++ G L +
Sbjct: 852 IFPDRLVFDILITAFSEKSKMHNALQV-FNCMKWLHMSPSSKTFSAMINGLIRKGYLDHS 910
Query: 283 WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
K+L + L + L N Y+ ++ +G+ D +++ AI
Sbjct: 911 HKVL--------------HEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIG 956
Query: 343 KVGIRLQKFGVVESL------------FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
V + + ++ L F SG PTV +TTL+HS E K +AL
Sbjct: 957 IVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADAL 1016
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ ME D+ +Y V+I IS A+ + ++K G P Y +
Sbjct: 1017 HLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAM 1076
Query: 451 MASGRLAKCRDVCKEAEMAGF 471
++GR+ ++ ++ E G
Sbjct: 1077 YSTGRVQNGEELLEDIEERGL 1097
>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rotundifolia]
Length = 440
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 2 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 61
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 62 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 121
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 122 TSYSTLLTMYVENK 135
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 50 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 107
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 108 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 167
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 168 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 201
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YTTLI K AL M + C +L Y +IK+ +
Sbjct: 356 GMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEM 415
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F L+ AG+ P + ++ +F +G ++ V KE + AG+ ++ T V L I
Sbjct: 416 MIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL--I 473
Query: 485 EKESRIG 491
SR G
Sbjct: 474 SSYSRCG 480
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%)
Query: 296 LDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
LD ++ ++ GKN K V+TL+ E + +N S ++M + RL
Sbjct: 604 LDINVLNAMVSIYGKNKMVKKVEEVLTLMKE----NSINHSAATYNSLMHMYSRLGDCEK 659
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E++ SG P Y T+I++ + + +EA + M+ S D+ Y + IK
Sbjct: 660 CEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIK 719
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
+VA AI L G P Y ++ + GR+ + +
Sbjct: 720 SYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAK 766
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
++G P+VV Y +LI + + + EAL + ME D+ Y +I + I
Sbjct: 319 NAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKID 378
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A+ +S++ G P Y +I++ G+ + V + AG+ D T LL
Sbjct: 379 AALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLL 438
Query: 483 QI 484
+
Sbjct: 439 AV 440
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 19/284 (6%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS VR LG+ + +A+ F + K P + S + +L HE + E +
Sbjct: 162 LSEVVRMLGNAKMVSKAIAIF-YQIKTRKCQPTAQAYNSMIIMLM--HEGQYGKVHELYN 218
Query: 259 SLASKG-------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
++++G A F K G A +LL K+ G IY LI K
Sbjct: 219 EMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKL 278
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---P 368
D + ++L +E+ + + D ++ L K G ++ +H+F R+ P
Sbjct: 279 DDVHG-ALSLFEEMRHQ----YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP 333
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRY 427
V+ +I+ + +A+ + M C+ + Y +IK LF + + S +
Sbjct: 334 DTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F ++KE+G P+ Y +I F + R+ K + +E + GF
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 8/215 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L L EL +++
Sbjct: 415 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK-AKRYDLACELFQEL--KENC 471
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
S A+M L K G ++ ++F G P V Y L+ E
Sbjct: 472 GSSSARVYAVMIK--HLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDE 529
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
AL+ + M+ C+ D+ +Y +++ RA+ S +K++ P Y ++
Sbjct: 530 ALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLG 589
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + +E GF+ D T +L+
Sbjct: 590 ALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILE 624
>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
macropoda]
Length = 427
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 2 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK++GF P Y MI +F + + R + E + AG +
Sbjct: 62 RKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNT 121
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 122 XSYSTLLTMYVENK 135
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 90 NAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMRE 149
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 150 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 201
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 6/150 (4%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q TA++ RL K V L+H G P V Y LI+ + AL +
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW 398
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
ME L + Y +IK DI +A+ F K+ + G PT Y +I ++ G
Sbjct: 399 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 458
Query: 456 L---AKCRDVCKEAEMAGFKLDKQTVVELL 482
+ A+ D+ KE G + D+ T EL+
Sbjct: 459 VNNAARLLDLMKE---NGCEPDEWTYNELV 485
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 39/245 (15%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGG-------------------RMLDPSIYAKLILELGKNP 312
G++ GN+ A +LL + K+ G ++ S Y + ++E G NP
Sbjct: 452 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP 511
Query: 313 D---------------KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
+ K + ++LL + + N + + A++ + +F E +
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRFSEAEKI 570
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
G P V+ YTTLI + + A + +ME CL +L Y +I
Sbjct: 571 CDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 630
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
A R + E G PT D Y ++ GR + + K+ + GF D++
Sbjct: 631 EGKADEAER----MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREI 686
Query: 478 VVELL 482
LL
Sbjct: 687 YYSLL 691
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 294 RMLDPSIYAK-LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
R+ P+ + + L+++ +N ++ V L+E+ S C ++ I+L KF
Sbjct: 122 RVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMG-FGFSLYSCNTLL---IQLAKFE 177
Query: 353 VVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+VE +L+ +SG P+++ + TLI+ + K REA ++ + + D+ Y
Sbjct: 178 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 237
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+I ++ A F ++ + G P Y +I GR+ + D+ +E
Sbjct: 238 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G PTVV Y TLI+ L++ A ++ M+ + C D Y ++ F
Sbjct: 430 LFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFS 489
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ A YF ++ E G P Y +I G++ + K E G
Sbjct: 490 KWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMG 543
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ LF+ H G P V Y TLIH + REA + NM + L +L Y +++
Sbjct: 275 KQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDG 334
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
F + +A R F ++ P +Y ++ SG L R++ E + G + +
Sbjct: 335 FCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPN 394
Query: 475 KQTVVELLQ 483
Q ++
Sbjct: 395 VQIYTTIIN 403
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P V +YTT+I+ E EAL NME C D +Y V+I+ F+
Sbjct: 382 LFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFL 441
Query: 417 ALNDISRAIRYFSKLKEAGF 436
D SRA+ ++++ GF
Sbjct: 442 QHKDESRAVHLIGEMRDRGF 461
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 12/193 (6%)
Query: 296 LDPSI--YAKLILELGKNPDKYMLVMTLLDELGQR----DDLNLSQQDCTAIMKVGIRLQ 349
L P+I + LI LGK K+ + L D++ R DD T I+ ++
Sbjct: 41 LQPTIVTFTTLINGLGK-VGKFAQAVELFDDMVARGCQPDDYTY-----TTIINGLCKIG 94
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+ + LF +G VV Y+TLIHS ++ EAL + M+A + + Y
Sbjct: 95 ETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYT 154
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
+I+ + A +++ P + ++ F G++ V K
Sbjct: 155 SLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEM 214
Query: 470 GFKLDKQTVVELL 482
G + D T L+
Sbjct: 215 GVEPDVVTYNSLM 227
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 333 LSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
LS CT ++ +LQ+ + S+ G PT+V +TTLI+ K +A+
Sbjct: 6 LSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAV 65
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
+ +M A C D Y +I + + + A F K++EAG
Sbjct: 66 ELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAG 110
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 339 TAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
T VGI R ++F + L G P VV Y LIH +EAL V M
Sbjct: 379 TYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEM 438
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ C D Y +I + I A+ + +++EAG P Y +I +G L
Sbjct: 439 QEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNL 498
Query: 457 A 457
A
Sbjct: 499 A 499
>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
Length = 999
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 18/231 (7%)
Query: 236 ASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKG----------FVKGGNLKLAWKL 285
A TV +L H L KL + +S+ + + T++ F KGG L A ++
Sbjct: 712 AVTVSILVTH--LTKHGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEM 769
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343
A++ G +D +Y ++ GK + L+ + E G R A
Sbjct: 770 FAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYAT 829
Query: 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
G+ + +S FH G P Y LI + K EA + M S+
Sbjct: 830 SGLCSE----AKSTFHEMQDCGHAPDSFSYLALIRAYTEAKLYMEAEEAIRMMLNSSTTP 885
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
P + +I F+ I A R ++++KEA P R M+R++M G
Sbjct: 886 SCPHFSHLIFAFLKEGQIGEAQRIYNQMKEASVAPDLACCRTMMRVYMEHG 936
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+ LI + K +AL + M+A + ++ L+ D S+A+
Sbjct: 312 PEEATYSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSL 371
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
S+++ + P IY +IRI+ G + ++ E AG D+QT V + Q+
Sbjct: 372 LSEMENSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQV 428
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 5/182 (2%)
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
GK D Y L M ++D+ RD + +S T + K G K S++ SG
Sbjct: 691 GKTEDAYHLFMEMVDQGSNRDAVTVSIL-VTHLTKHG----KLHSAISIYDRMISSGTSQ 745
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
++ + +I K +A+ + + D Y ++ L+ A F
Sbjct: 746 SMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMF 805
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
++KE G P + MI + SG ++ + E + G D + + L++ E+
Sbjct: 806 KRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLALIRAYTEA 865
Query: 489 RI 490
++
Sbjct: 866 KL 867
>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 426
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E +AL+ + ME DL Y +I+L L D SRAI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +G P Y MI +F + + R + E AG D + LL + E
Sbjct: 67 FSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NQ 128
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V Y TL+ + +K EAL++ M C FDL ++I ++ L
Sbjct: 108 AGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKE 167
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIF 450
A + F +++ G P Y ++R++
Sbjct: 168 ADKLFWSMRKMGIEPNVVSYNTLLRVY 194
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 8/190 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
F K G A ++ + G M D +Y LI LGK K + LL+++ ++ +
Sbjct: 344 AFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQG-KVDEALELLEDMNRKGIM 402
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR---DPTVVMYTTLIHSRLSEKKCRE 388
DC V L G E + +F R P VV Y TL++ ++ E
Sbjct: 403 ----PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDE 458
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A + M+A+ C+ DL + +I + A+ ++L + G P IY +I
Sbjct: 459 ACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALIS 518
Query: 449 IFMASGRLAK 458
F SG++ K
Sbjct: 519 GFCRSGQVDK 528
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAYRVVIKLFVALNDISRAIR 426
P V +T +H ++ +A+T+ +M E +C D+ AY +I + D RA+
Sbjct: 87 PDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALD 146
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMAS-GRLAKCRDVCKEAEMAGFKLDKQTVVELLQIE 485
F +LK+ G C + D + IF+ R V +E AG K D L I
Sbjct: 147 MFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTL--IH 204
Query: 486 KESRIGTI 493
R+G +
Sbjct: 205 CTCRLGML 212
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME- 397
TA++ R K V L +G P V+ Y +LI EA ++ +E
Sbjct: 585 TALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLER 644
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
NC D+ AYRV++ +S A+ +K++G P +DIY +IR L
Sbjct: 645 DENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELG 704
Query: 458 KCRDVCKEAEMA 469
K +V +E ++
Sbjct: 705 KAMEVLEEMTLS 716
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 78/214 (36%), Gaps = 37/214 (17%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK-------------------NP 312
G K G + +A K+ +G D Y+ LI L K P
Sbjct: 275 GLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEP 334
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQ--------DCT----AIMKVGIRLQKFGVV---ESL 357
D + L+D L + D L +QQ +CT + L K G V + +
Sbjct: 335 D-VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEV 393
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G +P VV Y +LIH AL ++ M A+ CL D+ Y +I
Sbjct: 394 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCK 453
Query: 418 LNDISRAIRYFSKLKEAGFC-PTYDIYRDMIRIF 450
A R F +K A FC P Y +I F
Sbjct: 454 TGRAPEANRLFGDMK-AKFCNPDVITYSCLIGGF 486
>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
Length = 553
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 2/160 (1%)
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKV-GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
+ +LD + D + CT ++ V RL++F + W +G P VV Y+TLI
Sbjct: 122 LAVLDAMAA-DGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLI 180
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
S + EAL V+ M C + Y ++ + I A R + + +GF
Sbjct: 181 SGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFA 240
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
P+ Y ++ G + + +E+ G+ D T
Sbjct: 241 PSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVIT 280
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V +T LI + + K REA+ +V + + D Y ++K F L+ S A+
Sbjct: 228 PDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGV 287
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ K+KE G P Y +I +GR+ + R K AG++ D T L+
Sbjct: 288 YKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMN 343
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 14/254 (5%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD ++ V L + ++ K+ F + +GV + K GN+ W
Sbjct: 238 PDSYTYSTLVNGLGKSGRVEEAHKV--FREMVDRGVAVDLVNYNSLLATLAKAGNMDRVW 295
Query: 284 KLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
KL+ G D + ++ LGK PD V + E G + DL +
Sbjct: 296 KLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY 355
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ G Q ++E + +G P Y +LIH ++ + EA V+ ME + C
Sbjct: 356 ARFGDAAQARQMLEEM----VEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGC 411
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
D+ Y ++ + + RA R F ++K+ G P Y I RL +
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALV 471
Query: 462 VCKEAEMAGFKLDK 475
+ K+ + G +DK
Sbjct: 472 LFKDMKAVGCPVDK 485
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V L + G P + T++ + K A V M S C DL +Y ++I
Sbjct: 294 VWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILID 353
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ D ++A + ++ EAGF P Y +I G++ + V +E E AG +
Sbjct: 354 SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413
Query: 474 DKQTVVELLQI 484
D T L+ +
Sbjct: 414 DVVTYNRLMDM 424
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G +P Y L+++ + +EA + M ++P Y +++ F
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ + A+ F+++K GF P+ Y ++ ++GR+ R + + G D
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241
Query: 477 TVVELLQ-IEKESRI 490
T L+ + K R+
Sbjct: 242 TYSTLVNGLGKSGRV 256
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V +T LI + + K REA+ +V + + D Y ++K F L+ S A+
Sbjct: 228 PDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGV 287
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ K+KE G P Y +I +GR+ + R K AG++ D T L+
Sbjct: 288 YKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMN 343
>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
alba]
Length = 419
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 61 RKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNT 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 SSYSTLLTMYVENK 134
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y + + L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKLCDYSKAIAIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 107 LIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 167 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP---DKYMLVMTLLDELGQ 327
G + G L+ A + K+ G LD Y LI + + Y L+ + E+G
Sbjct: 361 SGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEM-KEVGI 419
Query: 328 RDDLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
R D+ CT ++ + F V+ L G P+V+ + TL+H K
Sbjct: 420 RPDV------CTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGK 473
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
EAL ++ +M+ S + Y +I D+ AI F ++KE
Sbjct: 474 IDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKE 521
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+ G+ LFH G P +MY T+I + +A ++ +M+ + D
Sbjct: 329 LHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDT 388
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
AY ++I F + A ++KE G P Y ++ +G A
Sbjct: 389 KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFA 440
>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 9/210 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLLDELGQRD 329
G+ + G +K A L++ K+ G L S Y LI G P++ M LL E+ +
Sbjct: 69 GYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEE---AMKLLQEMAK-- 123
Query: 330 DLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D+N D T ++K + ++ +G P VV Y TL K
Sbjct: 124 DVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPW 183
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+A V+ M+ + Y +VI ++A I ++R ++K G PT ++ ++
Sbjct: 184 DAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLV 243
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ + S + K V K E G K D QT
Sbjct: 244 KGYSESMKPHKVDKVFKLMENFGVKPDVQT 273
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 12/211 (5%)
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
+A +LEA KGGN+ A+KL G D Y+ I + D +
Sbjct: 228 VAYNSLLEA----LCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHS-AF 282
Query: 320 TLLDELGQRDDL--NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
+LD + +R +L N+ +C I+K + +K L G P + Y +
Sbjct: 283 QVLDRM-RRYNLVPNVFTYNC--IVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQ 339
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ +AL ++ ME NC+ D Y +V+K+ + + R + ++E GF
Sbjct: 340 AFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFY 399
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
P Y M+ F + K + CK EM
Sbjct: 400 PAASTYAVMVHGFCK--KKGKLEEACKYFEM 428
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 8/171 (4%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD- 329
KG + G + A KL V K G + IY + L KN D M L +EL +
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKN-DCLFEAMELFNELKSYNF 478
Query: 330 DLNLSQQDC--TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
LN+ C + K G K LF + G P VV Y +IH +
Sbjct: 479 KLNIENYSCLIDGLCKAG----KLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
A + ME + C D+ AY ++ F N + I+ K+ + P
Sbjct: 535 NANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSP 585
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P++V + LI K AL M+A+ + Y +I F
Sbjct: 165 LFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFC 224
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
DI+ AIR FS +KE PT Y +I F + + ++ E E AG ++D Q
Sbjct: 225 RARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQ 284
Query: 477 TVVELLQ 483
+ LL
Sbjct: 285 SYGVLLH 291
>gi|255557995|ref|XP_002520026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540790|gb|EEF42350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1040
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 111/266 (41%), Gaps = 15/266 (5%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLA-----SKGVLEATAKGFVKGGNLKLAWKL 285
++ ++AS + + A+ +LK E F ++A K ++ + + K G + A+ L
Sbjct: 617 ENDVIASLISLYAKQQKLKQA--QEVFAAVADSPVCGKPIVNSMIDAYAKCGKSEDAYSL 674
Query: 286 LMVAKDGGRMLDP---SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
D G L SI K + GK+ + +V + R++++L +
Sbjct: 675 YREVTDRGLNLGAVGVSIIVKALSNRGKHQEAENIVRKSI-----RENMDLDTVAYNIFI 729
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K + + S++ G P++ Y T+I +K +A+ + +S
Sbjct: 730 KAMLEAGRLHFAASIYEHMLSLGVTPSIQTYNTMISVYGRGEKLDKAVEIFNTACSSGVS 789
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D AY ++ + + A F+K++E G P Y MI++F +G + +++
Sbjct: 790 LDEKAYMNMVSYYGKAGKRNEASLLFTKMQEEGIKPGKVSYNIMIKVFAIAGLYHEAKEL 849
Query: 463 CKEAEMAGFKLDKQTVVELLQIEKES 488
+ G+ D T + L+Q ES
Sbjct: 850 FHAMQRDGWPPDSFTYLSLVQAYTES 875
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 6/188 (3%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRDD 330
+ +G L A ++ A G LD Y ++ GK ++ L+ T + E G
Sbjct: 767 YGRGEKLDKAVEIFNTACSSGVSLDEKAYMNMVSYYGKAGKRNEASLLFTKMQEEG---- 822
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ + ++KV + + LFH G P Y +L+ + K EA
Sbjct: 823 IKPGKVSYNIMIKVFAIAGLYHEAKELFHAMQRDGWPPDSFTYLSLVQAYTESLKYSEAE 882
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ M L + ++ + + A R + KL +G P YR M+R +
Sbjct: 883 ETIDGMPKKGVLPSCSHFNHLLSAYAKAGLMVEAERVYKKLLTSGLSPDLACYRAMLRGY 942
Query: 451 MASGRLAK 458
+ G++ K
Sbjct: 943 LDYGQVEK 950
>gi|356557957|ref|XP_003547276.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g43820-like [Glycine max]
Length = 505
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
+L FV+ G++ A ++ D G D L+L L + ++L+
Sbjct: 147 MLSVVVDSFVRAGHVSRAIQVFGNLDDLGVRRDTEALNVLLLCLCRR-SHVGAANSVLNS 205
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ + D ++ + A+ R + VE + G P + LI E
Sbjct: 206 MKGKVDFDVGTYN--AVAGGWSRFGRVSEVERVMREMEADGLRPDCRTFGFLIEGLGREG 263
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ EA+ ++ M+ NC D Y VI FV++ D I+Y++++ P D Y
Sbjct: 264 RMDEAVEILCGMKEMNCQPDTETYNAVIFNFVSVGDFEECIKYYNRMLSDNCEPNLDTYA 323
Query: 445 DMIRIFMASGRLA 457
MI F+ + ++A
Sbjct: 324 RMINRFLRARKVA 336
>gi|428179975|gb|EKX48844.1| hypothetical protein GUITHDRAFT_68401 [Guillardia theta CCMP2712]
Length = 396
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 7/185 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAK-DGGRMLDPSIYAKLILELGKNPDKYML--VMTLLDELGQR 328
FV G+++ A +L + + +L +YA LI G+ K M+ M L++E+ +
Sbjct: 125 SFVNKGDMERAEAILREKEAEDPSLLSSHLYASLIKGYGR---KGMIDRCMALMEEMKSK 181
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
L +S ++ + ++ + +G P+VV YT LIH S +
Sbjct: 182 Q-LKVSAVPYNTLISALLESKRMDQAQKTLEQMEEAGIQPSVVTYTLLIHEFSSAGNVAQ 240
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A ME S D AY ++ + +L +R F KL ++ P+ + Y MI+
Sbjct: 241 AQAAFETMERSGIFPDTGAYNALLDGYASLGQTARMKEIFWKLMQSANKPSIETYSIMIK 300
Query: 449 IFMAS 453
+ S
Sbjct: 301 CLLHS 305
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 352 GVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
G E+ HWF + P ++Y +++ + ++ ME +L Y
Sbjct: 215 GNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLY 274
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+ F + D + + +F +LK G PT Y ++++F +G +AK D+ +E +
Sbjct: 275 TTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDK 334
Query: 469 AGFKLDK 475
G +K
Sbjct: 335 HGVSPNK 341
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P YT L +A + M+ N D+ AY ++K + R
Sbjct: 475 NGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQR 534
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A+ F ++ +AG Y M+ + G L+K RD+ K+ + GF LD
Sbjct: 535 AVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLD 585
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
+ + + SG P + TLI + +E + EAL + + ++ + ++I
Sbjct: 355 AKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILIN 414
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ D A+R F ++K +G P Y +I +SG+LAK D+ KE E++G
Sbjct: 415 ALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG 471
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 4/165 (2%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
D + LV LD G + + + ++ V K ++ES + + G +P VV
Sbjct: 143 DAFDLVSNQLDMFGVQANTEVYNH----LLTVLAEGSKIKLLESAYTEMSSQGIEPDVVT 198
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
+ T+I + ++ R A+ ++ M + + D + +++ FV I A+R +++
Sbjct: 199 FNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMS 258
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
E G PT +I + GR+ ++ GF+ D+ T
Sbjct: 259 EMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVT 303
>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 182
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF SG PT V+Y TL+ ++ AL + M+ + D AY +++
Sbjct: 12 LFKNLCASGHSPTTVIYITLLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVDGMC 71
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
++ A FS L G P Y +I++F G L + V +E E G
Sbjct: 72 KAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGG 125
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 317 LVMTLLDELGQRDDLNLSQQDCTA---IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
+ + L E+ Q++ L L DC A I+ + K + LF G P V Y
Sbjct: 43 MALALFHEM-QKNTLKL---DCVAYNIIVDGMCKAGKLNDAKELFSTLPIEGLQPDVRTY 98
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
LI +E EA V ME L D +Y V+I+ F+ ND+S A + ++ +
Sbjct: 99 NILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSYNVIIQGFLRHNDLSGATQLIHEMID 158
Query: 434 AGF 436
GF
Sbjct: 159 KGF 161
>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
filifolia]
Length = 439
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 61 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 TSYSTLLTMYVENK 134
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 107 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 167 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P++V + LI K AL M+A+ + Y +I F
Sbjct: 165 LFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFC 224
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ DI+RA+R F +KE G PT Y +I F + + + E E AG ++D Q
Sbjct: 225 RVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQ 284
Query: 477 TVVELLQ 483
+ LL
Sbjct: 285 SYGVLLH 291
>gi|356528278|ref|XP_003532731.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Glycine max]
Length = 1079
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 8/226 (3%)
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP---SIYAKLILELGKNPDKYML 317
+SK + + + K G + A+ L A GR L SI + GK+ + +
Sbjct: 715 SSKVLYNSMINAYAKCGKQEKAYLLYKQATGEGRDLGAVGISIAVNSLTNGGKHQEAENI 774
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
V L+E +L L +K + K S+F SG P++ + T+I
Sbjct: 775 VQRSLEE-----NLELDTVAYNTFIKAMLEAGKLHFASSIFEHMISSGVAPSIETFNTMI 829
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
++K A+ + + + D Y +I + + A + FSK++E G
Sbjct: 830 SVYGQDQKLDRAVEMFNQASSCSVPLDEKTYMNLIGYYGKAGLMLEASQLFSKMQEGGIK 889
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
P Y MI ++ +G L + + + G+ D T + L+Q
Sbjct: 890 PGKVSYNIMINVYANAGVLHETEKLFHTMQRQGYLPDSFTYLSLVQ 935
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 64/138 (46%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
++L F S+F + +G +P V Y L+ + ++ A+ ++ M+ C +
Sbjct: 347 VQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTI 406
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y +I F+ D+ A + S++K AG P Y ++ + G++ + V E
Sbjct: 407 QTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDE 466
Query: 466 AEMAGFKLDKQTVVELLQ 483
E+AG + + ++ L+Q
Sbjct: 467 MELAGVQPNFRSYTTLMQ 484
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 352 GVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
G VE+ WF S + V +Y+++IH+ A +V +ME L Y
Sbjct: 207 GNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLY 266
Query: 409 RVVIKLFVALNDISRAIRYFSKLK---EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+++ + + ++ + F KLK + G PT Y +I ++ G++ K + CKE
Sbjct: 267 NILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKE 326
Query: 466 AEMAGFKLDKQTVVELL 482
+ G L++ T L+
Sbjct: 327 MKAQGITLNRNTYSMLV 343
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PT+ Y T+I + R A V M+ + C + Y V++ V L I RA
Sbjct: 401 GCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRA 460
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+++ AG P + Y +++ F + G +
Sbjct: 461 ASVIDEMELAGVQPNFRSYTTLMQGFASIGEIG 493
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/258 (15%), Positives = 104/258 (40%), Gaps = 17/258 (6%)
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288
F R + +++L R ++ ++++ GF+K G++++A+K +
Sbjct: 381 FCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIID---------GFMKTGDVRMAYKTVSE 431
Query: 289 AKDGGRMLDPSIYAKL---ILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345
K G + + Y + +++LG+ D+ V+ ++ G + + + T +M+
Sbjct: 432 MKLAGCRPNATTYNVIMHNLVQLGQ-IDRAASVIDEMELAGVQPNF----RSYTTLMQGF 486
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+ + G+ + P ++ Y +L+ + + + A+ V M + +
Sbjct: 487 ASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNN 546
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ ++ + D+ A K+++ GF P Y + +G + K + +E
Sbjct: 547 YIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEE 606
Query: 466 AEMAGFKLDKQTVVELLQ 483
+ + + QT L+
Sbjct: 607 MKQQDLQPNLQTYTILIH 624
>gi|449434360|ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207147 [Cucumis sativus]
Length = 2802
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 360 WFTHSGRD--PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
W T ++ P +V Y + + EK+ ++ + ++ ME D+ +Y ++IK F
Sbjct: 1475 WATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKPDVYSYNILIKGFCQ 1534
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
D+ A +++ KLKE+ P YR ++ + G +CKEA GF
Sbjct: 1535 DGDLEEAKKWYYKLKESEVDPIATTYRILLPLLCEQGDFDSGLQLCKEAIDKGF 1588
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
DK +L +++ G DL TA+ + G +F ES++ + P +V
Sbjct: 1054 DKAILFFNHMEKNGMEPDLVTFNTLLTALYRKG----QFLDGESMWARMENKNIAPDLVS 1109
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y + + +K+ ++ + ++ ME D+ Y +I F D+ A +++ KLK
Sbjct: 1110 YNARLRGMVLDKRIQDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGDLEEAKKWYYKLK 1169
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
E+ P YR ++ + G +CKEA
Sbjct: 1170 ESEVDPNATTYRTLLPLLCEKGDFDSGLQLCKEA 1203
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
DK +L +++ G +L TA+ G +F ES++ + P ++
Sbjct: 1851 DKAILFFNDMEKNGTEPNLVTFNTLLTALYSKG----QFLDGESMWARMENKNIAPDLIS 1906
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y + + EK+ ++ + ++ ME ++ +Y ++I+ F D+ +A +++ KLK
Sbjct: 1907 YNARLQRMVLEKRIQDGIQLLAEMEEKAIKPNVDSYYILIEGFCEDGDLEQAKQWYYKLK 1966
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
+ P IYR ++ ++ G +CKE+
Sbjct: 1967 DNEVNPNASIYRTLLPLYCEKGDFDSGLRLCKES 2000
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 37/174 (21%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+SL G +PTVV+YTTLIH SE K EA ++ M+ S +L Y V++
Sbjct: 206 KSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDG 265
Query: 415 FVALNDISRAI-----------------------------------RYFSKLKEAGFCPT 439
+ ++ +A+ R+F ++ + G P
Sbjct: 266 YCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPN 325
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
++ +I + +G ++ D+ EM FK+ + I+ R+GT+
Sbjct: 326 VVVFNSLIDGYSKAGNCSEATDLL--LEMEKFKISPDVFTYSILIKNACRLGTV 377
>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
virgata]
Length = 424
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 2 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E AG +
Sbjct: 62 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNT 121
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 122 ASYSTLLTMYVENK 135
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 50 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 107
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 108 LISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 167
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 168 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 201
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 111/289 (38%), Gaps = 38/289 (13%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
S RE + RAL+ F + Q+Q P + + + ++ R
Sbjct: 49 FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGR-------------- 94
Query: 259 SLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLV 318
+G+LE ++ F + W + + LI G+N +Y
Sbjct: 95 ----EGLLEKCSEIFEDMPENDVKWNVYA-------------FTALINAYGRN-GQYEAS 136
Query: 319 MTLLDELG-QRDDLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
+ LL + +R + NL + A K G+ + G++ +LF H G P ++ Y T
Sbjct: 137 LHLLARMKKERVEPNLITYNTVLNACSKGGLDWE--GLL-NLFAQMRHEGIQPDLITYNT 193
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
L+ + S +A V M S + D Y+ ++ F N + R ++++ G
Sbjct: 194 LLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEG 253
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
P Y +I + +G + V K+ + G D +T LL+I
Sbjct: 254 NSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRI 302
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 53/135 (39%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+ G VE L G P + Y +LI + A V M+ C D+ Y
Sbjct: 238 QLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYS 297
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
+++++ + FS +KE PT Y +I++F G + ++ + +
Sbjct: 298 TLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDS 357
Query: 470 GFKLDKQTVVELLQI 484
G K D T LL +
Sbjct: 358 GVKPDDATYSALLSV 372
>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 352
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 83 NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 339 TAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
T VGI R ++FG + L G P VV Y LIHS EA++V M
Sbjct: 390 TYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRM 449
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + C D Y +I + + A+ + K++EA P Y +I +G L
Sbjct: 450 QEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHL 509
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 57/133 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L+ ++G P V Y+ ++ EA + M+ N + D P Y +++ L+
Sbjct: 550 LYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWG 609
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ ++ ++ ++ + AG CP ++ F+ RL+ ++ + G + Q
Sbjct: 610 KVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQ 669
Query: 477 TVVELLQIEKESR 489
T LL E+R
Sbjct: 670 TYTLLLSCCTEAR 682
>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
turbinata]
Length = 441
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 2 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 61
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 62 RKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 121
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 122 TSYSTLLTMYVENK 135
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 90 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMRE 149
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 150 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 201
>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 574
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M V I + +++F +G P+++ YTTL+ + +K+ ++V +E
Sbjct: 49 TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
S D + VI F ++ A++ K+KE G PT Y +I+ + +G+
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 165
>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
Length = 574
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M V I + +++F +G P+++ YTTL+ + +K+ ++V +E
Sbjct: 49 TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
S D + VI F ++ A++ K+KE G PT Y +I+ + +G+
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 165
>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN-CLFDL 405
R+ + + LF G T V + LIHS + +AL + +M+A+N C L
Sbjct: 28 RISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEAHKALQLFEDMKATNDCQPTL 87
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y +I ++ + + F KEAGF P Y +I +M +G+L++ + E
Sbjct: 88 VTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNALIWGYMRAGQLSQMEETFNE 147
Query: 466 AEMAGFKLD 474
+ K D
Sbjct: 148 LQAGECKAD 156
>gi|449440630|ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
gi|449524136|ref|XP_004169079.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
Length = 632
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 126/294 (42%), Gaps = 20/294 (6%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHM-NLPERALQTFCWAQKQPHLFPDD 232
+ G D DV L++ G L S +F +R L + N P +AL F W +P +
Sbjct: 202 VLGSDWSNDVPGKLEELGIAL---SDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHNT 258
Query: 233 RLLASTVEVLARHHELKVPFKLENFVSLASKGVLEAT----AKGFVKGGNLKLAWKLLMV 288
+ VL R ++ + + + A+ + T ++ F K + A KL +
Sbjct: 259 VSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYIKISRQFQKSKMMGEAVKLYEL 318
Query: 289 AKDGG---RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD---LNLSQQDCTAIM 342
DG + D S+ + I NPD ++L+ + ++ + +LS+ I
Sbjct: 319 MMDGPYKPSLQDCSVLLRTIAA-SDNPD-----LSLVYRVAKKFEATGYSLSKAMYDGIH 372
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
+ KF E++ ++G +P V Y+ L+ ++ EA V+ MEA C+
Sbjct: 373 RSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEARKVLDEMEAQGCI 432
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
D+ + ++I+ N++ A+ F+K+ E P D+ +I F+ +L
Sbjct: 433 PDIKTWTILIQGHCNANELDIALVCFAKMIEKNCDPDADLLDVLISGFLNQKKL 486
>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 352
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTTSYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 33/330 (10%)
Query: 126 PLPLPLPHRLRPLEL-PTPKKRVCLASSRASICKQVYKNPSFL----ISLARDIKGLDSH 180
P L HR+R L + P+PK +A AS K FL +D+ ++
Sbjct: 102 PTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTI 161
Query: 181 KDV---AEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAS 237
DV ++ ++K R F+V + + + L +C ++ P
Sbjct: 162 LDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVI----LNGWCLIKRTP----------K 207
Query: 238 TVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD 297
T+EVL E + L + ++ KGF + G ++ AW+ + K +D
Sbjct: 208 TLEVLKEMVERGINPNLTTYNTML---------KGFFRAGQIRHAWEFFLEMKKRDCEID 258
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
Y ++ G + + DE+ R+ + S A+++V + +
Sbjct: 259 VVTYTTVVHGFGV-AGEIKRARNVFDEM-IREGVLPSVATYNAMIQVLCKKDNVENAVVM 316
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G +P V Y LI + ++ ME C + Y ++I+ +
Sbjct: 317 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 376
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+++ +A+ F K+ P D Y +I
Sbjct: 377 CSEVEKALGLFEKMGSGDCLPNLDTYNILI 406
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
VV YTT++H + + A V M L + Y +I++ +++ A+ F
Sbjct: 259 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 318
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
++ G+ P Y +IR +G ++ ++ + E G + + QT +++ E
Sbjct: 319 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 376
>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rubella]
Length = 440
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 61 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 TSYSTLLTMYVENK 134
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 107 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L+ A + F +++ G P+ + ++R++
Sbjct: 167 QLSMAKEADKLFWGMRKMGIEPSVVSFNTLLRVY 200
>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Vitis vinifera]
Length = 450
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 6/236 (2%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK 271
P+RA++ F ++ + D + ++VL + +++ +N + +G K
Sbjct: 152 PDRAIKIF-FSMHEHGCVQDLNSFNTILDVLCKSKRVEMA---DNKLFKVFRGRFRILLK 207
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF + G LK AW+ + K +D Y ++ G + + +G+ +
Sbjct: 208 GFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGE--GV 265
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
S A ++V + S+F G P Y +I + +A+
Sbjct: 266 LPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAME 325
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ M+ C ++ Y VVI+ F +I + + F K+ +A P D Y +I
Sbjct: 326 FMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILI 381
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
VV YTT++H + R+A V M L + Y I++ +++ AI F
Sbjct: 234 VVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFE 293
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
++ G+ P Y +IR GR+ K
Sbjct: 294 EMLRKGYMPNSTTYNVVIRGLCHVGRMEK 322
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V+ YTTLI K A+ M + C +L Y +IKL
Sbjct: 349 GIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 408
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F L+ AGF P + ++ +F +G ++ V KE + +G+ ++ T V L I
Sbjct: 409 MAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSL--I 466
Query: 485 EKESRIG 491
SR G
Sbjct: 467 SSYSRCG 473
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 6/191 (3%)
Query: 296 LDPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
LD ++ ++ GKN K +++L+ + +NLS ++M + RL
Sbjct: 597 LDINVLNAMVSVYGKNRMVKKVEEILSLM----KGSSINLSTATYNSLMHMYSRLGDCEK 652
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E++ SG P Y T+I++ + + +EA + M++S + D+ Y + +K
Sbjct: 653 CENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVK 712
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+VA + AI + G P Y +++ + G++A + +
Sbjct: 713 SYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQLHPGI 772
Query: 474 DKQTVVELLQI 484
KQ LL++
Sbjct: 773 SKQEQQRLLEL 783
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
G P+VV Y +LI S + + +EA + ME D+ Y +I I
Sbjct: 313 GGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDA 372
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
AI + ++ G P Y +I++ G+ + V + AGF D T LL
Sbjct: 373 AIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLA 432
Query: 484 I 484
+
Sbjct: 433 V 433
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 2/176 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D Y+ L L +N D ++ L ++ + + C+ ++ + K + E
Sbjct: 167 DGFTYSILFDGLSRNGDSKAMLSLFGKYL--KNGVTIGDYTCSILLNGLCKDGKVSIAEE 224
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ ++G PT V+Y TLI+ + A + M++ + D Y +I
Sbjct: 225 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC 284
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
I+ A ++++ G PT + + +I + +G+L KC V E + G K
Sbjct: 285 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 340
>gi|334187948|ref|NP_001190400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332006093|gb|AED93476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M V I + +++F +G P+++ YTTL+ + +K+ ++V +E
Sbjct: 49 TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
S D + VI F ++ A++ K+KE G PT Y +I+ + +G+
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 165
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 120/302 (39%), Gaps = 24/302 (7%)
Query: 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL 266
G NLP++AL+TF + Q H P + L +++L H P + F S GV
Sbjct: 93 GEANLPDQALKTF-HSMLQFHSKPLPKHLNXLLQLLVSHRNYIRP-AFDLFKSAHRYGVS 150
Query: 267 EAT------AKGFVKGGNLKLAWKLL--MVAKDGGRMLDPSIYAKLILELGKNPDKYMLV 318
T F G+L +A+ L M +D D Y L+ L + V
Sbjct: 151 PDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAP--DVESYRILMQGLCRKSQVNRAV 208
Query: 319 MTLLDELGQR---DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
L D L + D L+ T ++ R +K L G +P +V Y T
Sbjct: 209 DLLEDMLNKGYVPDALSY-----TTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNT 263
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
+I E + +A V+ +M ++ C +L +Y ++ A Y ++ G
Sbjct: 264 VILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKG 323
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL----QIEKESRIG 491
F P + ++ +I F G+L + +V E G +T V ++ +++K R+
Sbjct: 324 FSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAIIPRICEVDKLVRME 383
Query: 492 TI 493
I
Sbjct: 384 NI 385
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L H R PT V YTTL+ + +E++ +A+ ++ +M+AS D+ Y +I+
Sbjct: 101 LLRVMAHETR-PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLC 159
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
D+ +A+ ++ E+G P +Y +++ + +GR V + EM+G ++
Sbjct: 160 DAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFE--EMSGRGIEPD 217
Query: 477 TVVELLQIEKESRIGTI 493
V+ I+ R G +
Sbjct: 218 VVMYTGLIDSLCREGKV 234
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 352 GVVESLFHWF--THSGRDPTVVMYTTLIHS--RLSEKKCREALTVVWNMEASNCLFDLPA 407
G++E ++F H VV Y+T+IH RL ++K E + +M + D
Sbjct: 444 GMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEF--LKHMLDEGLIPDSVT 501
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y ++I +F D+ A R ++ +GF P ++ +I+ + A G K ++ +E
Sbjct: 502 YSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMT 561
Query: 468 MAGFKLDKQTV 478
LD + +
Sbjct: 562 AKDIALDSKII 572
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 2/176 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D Y+ L L +N D ++ L ++ + + C+ ++ + K + E
Sbjct: 119 DGFTYSILFDGLSRNGDSKAMLSLFGKYL--KNGVTIGDYTCSILLNGLCKDGKVSIAEE 176
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ ++G PT V+Y TLI+ + A + M++ + D Y +I
Sbjct: 177 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC 236
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
I+ A ++++ G PT + + +I + +G+L KC V E + G K
Sbjct: 237 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 292
>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
microcephala]
Length = 440
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 61 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNT 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 ASYSTLLTMYVENK 134
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 107 LIGEMKAAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 167 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 74/191 (38%), Gaps = 41/191 (21%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRD 329
GF K GNL+ A K+L V + GR P++ Y+ L+ L K D L Q
Sbjct: 198 GFCKSGNLEKAMKMLGVME--GRKCVPNVVTYSSLLHGLCKAGD-----------LDQAL 244
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
DL F T G P VV YTTLIH + K A
Sbjct: 245 DL--------------------------FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 278
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
++ M A+ C D +Y ++ + L I A + F ++ P Y ++R
Sbjct: 279 RLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRG 338
Query: 450 FMASGRLAKCR 460
F + RL + R
Sbjct: 339 FCNASRLEEAR 349
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 289 AKDGGRMLDPSIYAKLI-LELGKNPDKYMLVMTLLDELG-QRDDLNLSQQDCTAIMKVGI 346
KDG ML +++ K+ L L NP Y ++M + G QR+ + + + + GI
Sbjct: 204 CKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYEN----MKRSGI 259
Query: 347 RLQKF------------GVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ G+V+ F F G V+ Y LI KK EA+
Sbjct: 260 VPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVK 319
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+V + ++ Y ++I F + + A+R F++LK +G PT Y +I +
Sbjct: 320 LVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYS 379
Query: 452 ASGRLAKCRDVCKEAE 467
LA D+ KE E
Sbjct: 380 KVENLAGALDLVKEME 395
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ SG PT+V Y TLI + AL +V ME Y ++I F
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
LN +A S ++++G P Y ++ G +
Sbjct: 415 RLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNM 454
>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
[Xeroaloysia ovatifolia]
Length = 431
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 10 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 70 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVE 129
Query: 488 SR 489
++
Sbjct: 130 NK 131
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 46 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 103
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P YTTL+ + KK EAL+V M CL DL ++I ++
Sbjct: 104 LISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 163
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 164 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 197
>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
Length = 635
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 333 LSQQDC------TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
LS+ C T +M + I + V+S+ G P++V YTTL+ + +K
Sbjct: 64 LSKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHF 123
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+++ +E + D + VI F ++ A++YF K+KE+G PT + +
Sbjct: 124 DSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTL 183
Query: 447 IRIFMASGR 455
I+ + +G
Sbjct: 184 IKGYGIAGE 192
>gi|413938637|gb|AFW73188.1| hypothetical protein ZEAMMB73_055137 [Zea mays]
Length = 1115
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 112/301 (37%), Gaps = 38/301 (12%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL-ENFVSLASKGVLEATAKGF 273
ALQ F W ++P+ P + + +++ + K + L + ++
Sbjct: 745 ALQFFSWVCRRPYYMPSTKTYNTAMKLAGSAKDFKHMWYLYREMLRTGCSPTVDTWNVMV 804
Query: 274 VKGGNLKLAWKLLMV---AKDGGRMLDPSIYAKLILEL---------------------G 309
+ GN L+ K L K G + D + Y LI+ L G
Sbjct: 805 CQYGNAGLSEKALNTFWDMKKCGFLPDKTTYNHLIMYLTHIKGRKIDVAVTIFQEMCHAG 864
Query: 310 KNPDKYMLVMTLLDELGQRD------------DLNLSQQDCTAI-MKVGIRLQKFGVVES 356
PDK +L M LL R +L S Q +I ++ R +
Sbjct: 865 HIPDKRILFMYLLALCECRKIEDATSSVVSLCELGFSVQAVYSIFLRSLCRADRMEEALH 924
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G MY +LIH L K EA+ + M+ L Y I +
Sbjct: 925 LFDCIEKHGCSRDQYMYGSLIHVLLRRDKFEEAVAKLMEMKNEGILQSAHIYTSFIVYYF 984
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
D+ +A+ ++KE G PT + +IR +MA +++ DV ++ ++ G D +
Sbjct: 985 QKRDVVKALDVLREMKENGCEPTVVTFSALIRGYMAMDMVSEAWDVFQQMKLKGPAPDFE 1044
Query: 477 T 477
T
Sbjct: 1045 T 1045
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 8/215 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K + A LL + G P+ Y LI LGK +Y L L EL +++
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK-AKRYDLANELFQEL--KENC 467
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
S A+M L K G ++ LF G P V Y L+ E
Sbjct: 468 GSSSARVYAVMIK--HLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDE 525
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
ALT + M+ C+ D+ +Y +++ RA+ +K++ P Y ++
Sbjct: 526 ALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLG 585
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + KE GF D T +L+
Sbjct: 586 ALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILE 620
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 111/282 (39%), Gaps = 15/282 (5%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
LS +R LG+ + +A+ F + K P S + +L E + +L N +
Sbjct: 158 LSDIIRMLGNAKMISKAVAIF-YQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEM 216
Query: 259 SLASKG-----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD 313
S + A F K G A LL KD G IY L+ L K D
Sbjct: 217 SNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFK-LD 275
Query: 314 KYMLVMTLLDELGQ---RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
+ L +E+ R D+ + + K G RL + + FH G P
Sbjct: 276 NVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAG-RLDE---AYNFFHEMRREGCRPDT 331
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRYFS 429
V+ +I+ + +A+ + ME C+ + Y +IK LF + + +S +F
Sbjct: 332 VLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFE 391
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
++K +G P+ Y +I F + R K + +E + GF
Sbjct: 392 RMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGF 433
>gi|356558306|ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Glycine max]
Length = 1064
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
CTA++ ++ + G V L W G VV+Y+ + E+ E + M
Sbjct: 198 CTALVGALCKMGRVGEVCGLVQWMEREGLGLDVVLYSAWACGYVEERVLGEVFGRMREMV 257
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
D +Y V++ F L D+ ++ + +K+ + G P Y ++ + G++
Sbjct: 258 EKGIGHDFVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVE 317
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
+ V + + G LD+ V L I+ RIG
Sbjct: 318 EAFGVFESMKDLGIDLDEYVFVIL--IDGFGRIG 349
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 20/219 (9%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G KGG L A L + G L+ IY +I L + + + LLD + + L
Sbjct: 719 GLCKGGYLNKALDLCAFVEKKGMNLNIVIYNSIINGLC-HEGRLIEAFRLLDSI---EKL 774
Query: 332 NLSQQDCT------AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
NL + T A+ + G L E +F G P V +Y +L+ +
Sbjct: 775 NLVPSEITYATVIYALCREGFLLD----AEHVFSKMVLKGFQPKVQVYNSLLDGISKFGQ 830
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
+A ++ +ME D VI + D+ A+ ++ K K P + +
Sbjct: 831 LEKAFELLNDMETKYIEPDSLTISAVINCYCQKGDMHGALEFYYKFKRKDMSPDFFGFLY 890
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+IR GR+ + R V +E L + VVEL+ I
Sbjct: 891 LIRGLCTKGRMEEARSVLREM------LQSKNVVELINI 923
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 7/204 (3%)
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
+K A + K G ++ A+ + KD G LD ++ LI G+ D + V L
Sbjct: 299 NKVTYSAIMSAYCKKGKVEEAFGVFESMKDLGIDLDEYVFVILIDGFGRIGD-FDKVFCL 357
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
DE+ +R ++ S A+M L K G + D V+ Y+TL+H +
Sbjct: 358 FDEM-ERSGISPSVVAYNAVMN---GLSKHGRTSEADELLKNVAAD--VITYSTLLHGYM 411
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
E+ L +E S D+ V+I+ + + + E P
Sbjct: 412 EEENIPGILQTKRRLEESGISMDVVMCNVLIRALFMMGAFEDVYALYKGMPEMDLIPNSV 471
Query: 442 IYRDMIRIFMASGRLAKCRDVCKE 465
Y MI + GR+ + +V E
Sbjct: 472 TYCTMIDGYCKVGRIEEALEVFDE 495
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 352 GVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
G E+ HWF + P ++Y +++ + ++ ME +L Y
Sbjct: 101 GNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLY 160
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+ F + D + + +F +LK G PT Y ++++F +G +AK D+ +E +
Sbjct: 161 TTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDK 220
Query: 469 AGFKLDK 475
G +K
Sbjct: 221 HGVSPNK 227
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
IM R F ++ +G P +V+Y L+H+ + +AL V+ N+EA+
Sbjct: 233 IMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANR 292
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
L + Y ++ +V +I +A+ F ++K AG P Y ++ SG LAK R
Sbjct: 293 LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLL-----SG-LAKAR 346
Query: 461 DV 462
+
Sbjct: 347 QM 348
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P YT L +A + M+ N D+ AY ++K + R
Sbjct: 361 NGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQR 420
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A F ++ +AG Y M+ + G L+K RD+ + + GF LD
Sbjct: 421 AAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLD 471
>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 333 LSQQDC------TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
LS+ C T +M + I + V+S+ G P++V YTTL+ + +K
Sbjct: 64 LSKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHF 123
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+++ +E + D + VI F ++ A++YF K+KE+G PT + +
Sbjct: 124 DSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTL 183
Query: 447 IRIFMASGR 455
I+ + +G
Sbjct: 184 IKGYGIAGE 192
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 14/261 (5%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD + ++ L + +V LE + +GV A GF K G+L A+
Sbjct: 217 PDSITFTALMDALGKAG--RVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274
Query: 284 KLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
LL K G D Y+ LI L K D+ V+ +++ G D +
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
K G+ L G LF G +P VV Y+TLI + + A + ME+
Sbjct: 335 GKAGL-LNDAG---RLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGI 390
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
DL Y +I + + A R FS+++ G P Y + GR + R
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARK 450
Query: 462 VCKEAEMAGFKLDKQTVVELL 482
+ ++ + +G D T LL
Sbjct: 451 IFEDMKESGLLPDVATYDALL 471
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 348 LQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G E LF + P VV Y+ LI+S K AL VV M+A C +
Sbjct: 19 LAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPN 78
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
L Y ++ A+R +++++ G P Y +I +GRL++
Sbjct: 79 LWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSE 132
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 8/212 (3%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---GQRDDL 331
K G L A+ L ++ G + D Y LI LGK + M LL+E+ G D+
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGK-VGRSQKAMELLEEMERHGCPPDV 184
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
T + K G ++ F LF GR P + +T L+ + + +AL
Sbjct: 185 MTYSSLITGLGKDGETVKAF----KLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALE 240
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ M+ + Y +I F + D+ A ++K G P Y +I +
Sbjct: 241 LLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLI 300
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ +L + V K+ E G D T L+
Sbjct: 301 KASQLDEACQVLKKMEKEGCPPDTITYNTLIN 332
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P + Y TL+ + EAL ++ M + C+ D+ Y +I +S A
Sbjct: 74 GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEA 133
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
F++++E G P Y +I GR K ++ +E E G D T L+
Sbjct: 134 FTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLI 191
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME- 397
TA++ R K V L +G P V+ Y +LI EA ++ +E
Sbjct: 466 TALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLER 525
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
NC D+ AYRV++ +S A+ +K++G P +DIY +IR L
Sbjct: 526 DENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELG 585
Query: 458 KCRDVCKEAEMA 469
K +V +E ++
Sbjct: 586 KAMEVLEEMTLS 597
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
TL + G + D+ + + + + Q G++ES+ G P +V Y +L+
Sbjct: 618 AFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI----REDGLSPDLVTYNSLM 673
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ +C +A ++ +E S DL +Y VIK F + A+R S++ E G
Sbjct: 674 DMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIR 733
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDV 462
P Y + + A G A+ DV
Sbjct: 734 PCIFTYNTFVSGYTAMGMFAEIEDV 758
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 12/230 (5%)
Query: 257 FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYM 316
F VL A A+ G L+ A + K G Y L+ GK Y
Sbjct: 279 FDEFTCSTVLSACARE----GLLREAKEFFAELKSCGYEPGTVTYNALLQVFGK-AGVYT 333
Query: 317 LVMTLLDELGQRD---DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
+++L E+ + D + A ++ G + GV+E + T G P + Y
Sbjct: 334 EALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM----TKKGVMPNAITY 389
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
TT+I + K EAL + ++M+ + C+ + Y V+ L + + I+ +K
Sbjct: 390 TTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKS 449
Query: 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G P + M+ + G V +E + GF+ D+ T L+
Sbjct: 450 NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLIS 499
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 16/254 (6%)
Query: 213 ERALQTFCW---AQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL--------A 261
ERA+ F W + L D +++ V +L R + V KL + + L A
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRA 212
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
+L A + + G + A L K+ G Y ++ GK + ++ +
Sbjct: 213 YTTILHA----YSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 268
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
LDE+ + L + C+ ++ R + F G +P V Y L+
Sbjct: 269 LDEM-RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
EAL+V+ ME ++C D Y ++ +V A + + G P
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAI 387
Query: 442 IYRDMIRIFMASGR 455
Y +I + +G+
Sbjct: 388 TYTTVIDAYGKAGK 401
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 81/220 (36%), Gaps = 29/220 (13%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVMTLLDELGQR 328
KGF + G L+ AW + K G + PD Y V+ L GQ
Sbjct: 253 KGFFRSGQLQHAWDFFLQMKKRGSN-----------DENCKPDVVSYTTVLHGLGVAGQL 301
Query: 329 DDL-----NLSQQDCT-------AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTL 376
D +S++ CT A+++V + ++F G P VV YT L
Sbjct: 302 DKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVL 361
Query: 377 IHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
I K A+ ++ M+ C ++ Y V+I DI +A+ F + +
Sbjct: 362 IRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEE 421
Query: 437 C-PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
C P D Y +I R D+ A M +D+
Sbjct: 422 CLPNQDTYNIIISAMFVRKR---AEDMAVAARMVVEMVDR 458
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV YTT++H + +A V M C + Y +I++ ++ A+
Sbjct: 283 PDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAV 342
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
F + G+ P Y +IR +G++ + + + + G + + QT
Sbjct: 343 FDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQT 392
>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Vitis vinifera]
Length = 635
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 333 LSQQDC------TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
LS+ C T +M + I + V+S+ G P++V YTTL+ + +K
Sbjct: 64 LSKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHF 123
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+++ +E + D + VI F ++ A++YF K+KE+G PT + +
Sbjct: 124 DSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTL 183
Query: 447 IRIFMASGR 455
I+ + +G
Sbjct: 184 IKGYGIAGE 192
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 338 CTAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
CT +GI R + F L G +P VV Y LIH+ EA+ + +
Sbjct: 68 CTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQ 127
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
M+ C D Y ++ L A+ + K+++AGF P Y +I +G+
Sbjct: 128 MQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGK 187
Query: 456 LAKCRDVCKEAEMAGF 471
+++ + +E GF
Sbjct: 188 VSEALKLFEEMVERGF 203
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P Y+ +IH K EAL + M L Y ++I L +
Sbjct: 166 AGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVM 225
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A++ ++ +++AGF P Y M+ + G L + + E E AG+ D
Sbjct: 226 AMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPD 276
>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 13/268 (4%)
Query: 210 NLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA- 268
N AL F WA+KQ + +E L + + V + L + KG+L
Sbjct: 17 NAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNL--VTDMKQKGLLNKE 74
Query: 269 ----TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN--PDKYMLVMTLL 322
++ + + +K A M + G ++ S +L+ L K+ ++ LV +
Sbjct: 75 TFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQVERAQLVFDKM 134
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
++ G D+ + T +++ + + + +++ G +P VV Y LI++
Sbjct: 135 NKRGFVADI----KSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCK 190
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
++ +A+ + MEA NC Y +I A +S A+ +F K +GF P
Sbjct: 191 SRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPT 250
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAG 470
Y ++ + S R+ + E G
Sbjct: 251 YNAVVGAYCWSERMDDVQRTIDEMRKGG 278
>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P YTTL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|449479641|ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 360 WFTHSGRD--PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
W T ++ P +V Y + + EK+ ++ + ++ ME D+ +Y ++IK F
Sbjct: 238 WATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKPDVYSYNILIKGFCQ 297
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
D+ A +++ KLKE+ P YR ++ + G +CKEA GF
Sbjct: 298 DGDLEEAKKWYYKLKESEVDPIATTYRILLPLLCEQGDFDSGLQLCKEAIDKGF 351
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 339 TAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
T VGI R ++F + L G PTVV Y LIHS +A+ V M
Sbjct: 340 TYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQM 399
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + C D Y +I + ++ A+ + +++ AG P Y MI +G L
Sbjct: 400 QKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHL 459
Query: 457 A 457
A
Sbjct: 460 A 460
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 20/225 (8%)
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL-- 331
K G L A ++ + G D Y+ +I LGK L D L
Sbjct: 419 AKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGK-----------AGHLAAADKLFC 467
Query: 332 NLSQQDCT---AIMKVGIRLQ----KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ +Q C + I LQ + L+ ++G +P V Y+ ++
Sbjct: 468 EMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSG 527
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
EA + M+ N + D P Y +++ L+ ++ +A ++ + AG CP
Sbjct: 528 YLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCN 587
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
++ F+ RL ++ + G QT LL E+R
Sbjct: 588 SLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCTEAR 632
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 11/182 (6%)
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES---LFHWFTHSGRDPTV 370
K+ L + D ++ D S D + + + L K G V S +F+ G V
Sbjct: 150 KFDLALRAFDWFMKQKDYQ-SMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDV 208
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL----NDISRAIR 426
YT+LI + + + REA+ V ME C L Y V++ +F + N I+ +
Sbjct: 209 YSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVE 268
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486
K+K G P Y +I + V +E + AGF DK T LL +
Sbjct: 269 ---KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 487 ES 488
+S
Sbjct: 326 KS 327
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V YTTL+ K A+++ M + C ++ + IK++ +
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 438
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
++ F ++ G P + ++ +F +G ++ V KE + AGF +++T L I
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL--I 496
Query: 485 EKESRIGTI 493
SR G+
Sbjct: 497 SAYSRCGSF 505
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 4/202 (1%)
Query: 272 GFVKGGNLKL-AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
GF K +L L A+ M KD MLD S+ A +I LGK + + + L Q D
Sbjct: 146 GFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKE-GRVSSAANMFNGL-QEDG 203
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+L T+++ ++ ++F G PT++ Y +++ +
Sbjct: 204 FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKI 263
Query: 391 T-VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
T +V M++ D Y +I + A + F ++K AGF Y ++ +
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV 323
Query: 450 FMASGRLAKCRDVCKEAEMAGF 471
+ S R + V E + GF
Sbjct: 324 YGKSHRPKEAMKVLNEMVLNGF 345
>gi|224058965|ref|XP_002299667.1| predicted protein [Populus trichocarpa]
gi|222846925|gb|EEE84472.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK-CREALTVVWNM 396
C ++++ +R KF FH ++G P + Y+TL+ + K +AL +V +
Sbjct: 76 CNSLLRCLVRNTKFDSSMKFFHKMKNNGLTPDAITYSTLLAGCMKIKDGYSKALDLVQEL 135
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ D Y ++ + + N A YF+++K+ G P Y ++ + + G
Sbjct: 136 NYNGLQMDSIMYGTLLAVCASNNRCEEAQSYFNQMKDEGHSPNIFHYSSLLNAYSSDGNY 195
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELLQI 484
K ++ ++ + +G +K + LL++
Sbjct: 196 KKAEELVQDMKSSGLVPNKVILTTLLKV 223
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 49/115 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L ++G +MY TL+ S +C EA + M+ ++ Y ++ +
Sbjct: 131 LVQELNYNGLQMDSIMYGTLLAVCASNNRCEEAQSYFNQMKDEGHSPNIFHYSSLLNAYS 190
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ + +A +K +G P I ++++++ G K RD+ E + GF
Sbjct: 191 SDGNYKKAEELVQDMKSSGLVPNKVILTTLLKVYVRGGLFEKSRDLLVELDTLGF 245
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 14/216 (6%)
Query: 228 LFPDDRLLASTVEVL--ARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGGNL 279
++P+ R A T L A H V +E F + +G + G + G L
Sbjct: 310 VWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRL 369
Query: 280 KLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLLDELGQRDDLNLSQQD 337
AW + K G LD Y LI K ++ ++ + E G + D+
Sbjct: 370 DDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTL 429
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
+ + K G F V+ L G P+VV + TLIH + EAL + +M+
Sbjct: 430 LSGLCKAG----DFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMD 485
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
S + Y +I D S AI F +++E
Sbjct: 486 ESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMRE 521
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+ GV LFH G P +MY T+I + +A ++ +M+ + D
Sbjct: 329 LHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDA 388
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
AY ++I F ++ A ++KEAG P Y ++ SG L K D
Sbjct: 389 KAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLL-----SG-LCKAGDFLAV 442
Query: 466 AEMAGFKLD 474
E+ G +D
Sbjct: 443 DELLGKMID 451
>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 6/241 (2%)
Query: 224 KQPHLFPDDRLLASTVEVL--ARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKL 281
+Q L PD+ A + L A E F + V+L +K GF K GN
Sbjct: 559 EQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVAL-TKVYYTTLIDGFSKAGNTDF 617
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
A L+ D G D Y+ L+ L K + + +LD++ R + + T +
Sbjct: 618 AATLIERMIDEGCTPDSYTYSVLLHALCKQK-RLNEALPILDQMSLR-GIKCTIFAYTIL 675
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ +R K + +++ T SG P+ YT I+S E + +A ++ ME
Sbjct: 676 IDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGV 735
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
D+ Y ++I + I RA ++ A P Y Y +++ + G LA R
Sbjct: 736 APDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL-KGNLAYVRS 794
Query: 462 V 462
V
Sbjct: 795 V 795
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%)
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G+ QK E L + G PTVV +T LI+ +K +AL + M +S C D
Sbjct: 367 GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 426
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L + +I + + + A +++ G P Y +I + SG++ +V K
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486
Query: 465 EAEMAGFKLDKQTVVELL 482
E G + + T L+
Sbjct: 487 MMERDGCQPNAWTYNSLM 504
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 77/199 (38%), Gaps = 11/199 (5%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKL---ILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
A++L + + G D YA L + + G+ + Y ++ R + L++
Sbjct: 551 AFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIV--------RKGVALTKVYY 602
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + +L G P Y+ L+H+ +K+ EAL ++ M
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 662
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ AY ++I + A R ++++ +G P+ Y I + GRL
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722
Query: 459 CRDVCKEAEMAGFKLDKQT 477
D+ + E G D T
Sbjct: 723 AEDLILKMEREGVAPDVVT 741
>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL++ M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 6/241 (2%)
Query: 224 KQPHLFPDDRLLASTVEVL--ARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKL 281
+Q L PD+ A + L A E F + V+L +K GF K GN
Sbjct: 559 EQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVAL-TKVYYTTLIDGFSKAGNTDF 617
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
A L+ D G D Y+ L+ L K + + +LD++ R + + T +
Sbjct: 618 AATLIERMIDEGCTPDSYTYSVLLHALCKQK-RLNEALPILDQMSLR-GIKCTIFAYTIL 675
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ +R K + +++ T SG P+ YT I+S E + +A ++ ME
Sbjct: 676 IDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGV 735
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
D+ Y ++I + I RA ++ A P Y Y +++ + G LA R
Sbjct: 736 APDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL-KGNLAYVRS 794
Query: 462 V 462
V
Sbjct: 795 V 795
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%)
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G+ QK E L + G PTVV +T LI+ +K +AL + M +S C D
Sbjct: 367 GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 426
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L + +I + + + A +++ G P Y +I + SG++ +V K
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486
Query: 465 EAEMAGFKLDKQTVVELL 482
E G + + T L+
Sbjct: 487 MMERDGCQPNAWTYNSLM 504
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 77/199 (38%), Gaps = 11/199 (5%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKL---ILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
A++L + + G D YA L + + G+ + Y ++ R + L++
Sbjct: 551 AFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIV--------RKGVALTKVYY 602
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + +L G P Y+ L+H+ +K+ EAL ++ M
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 662
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ AY ++I + A R ++++ +G P+ Y I + GRL
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722
Query: 459 CRDVCKEAEMAGFKLDKQT 477
D+ + E G D T
Sbjct: 723 AEDLILKMEREGVAPDVVT 741
>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 12/211 (5%)
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
+A +LEA KGGN+ A+KL G D Y+ I + D +
Sbjct: 255 VAYNSLLEA----LCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHS-AF 309
Query: 320 TLLDELGQRDDL--NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
+LD + +R +L N+ +C I+K + +K L G P + Y +
Sbjct: 310 QVLDRM-RRYNLVPNVFTYNC--IVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQ 366
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ +AL ++ ME NC+ D Y +V+K+ + + R + ++E GF
Sbjct: 367 AFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFY 426
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
P Y M+ F + K + CK EM
Sbjct: 427 PAASTYAVMVHGFCK--KKGKLEEACKYFEM 455
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 6/225 (2%)
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
S V A G +KGG+ + A ++ K + Y LI GK YM +
Sbjct: 167 SAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVF 226
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
+ Q+ N+ TA++ R E +F +G +P V Y L+ +
Sbjct: 227 HEMRSQKCKPNICT--FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 284
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF--VALNDISRAIRYFSKLKEAGFCPT 439
A + M+ C D +Y +++ + L++ ++A+ F +K G PT
Sbjct: 285 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV--FEVMKRLGITPT 342
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ ++ + +G++AKC ++ + +G K D + +L +
Sbjct: 343 MKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 387
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G +PTV ++TTLI E + AL+++ M++S+ D+ Y V I F
Sbjct: 189 TLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + A ++F +++ G P Y MI + + RL
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRL 289
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+++ V R + F ++ + + +G P+V ++ + K RE VV M
Sbjct: 102 NSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRK 161
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
AY +I F A+N + F +++E G+ PT ++ +IR F GR+
Sbjct: 162 FKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDS 221
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
+ EM LD V+ + I+ ++G +
Sbjct: 222 ALSLLD--EMKSSSLDADIVLYNVCIDSFGKVGKV 254
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+ LIH + E + ++M+ C+ D AY +VI F +++A +
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
++K GF PT Y +I RL + + +EA+ +L+ V+ I+
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN--VVIYSSLIDGF 667
Query: 488 SRIGTI 493
++G I
Sbjct: 668 GKVGRI 673
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 3/208 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF K G + A LL K D +Y I GK K + E+ + +
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGK-VGKVDMAWKFFHEI-EANG 268
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L + T+++ V + + +F + R P Y T+I S K EA
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+++ A + + AY ++ + + A++ F ++K+ P Y +I +
Sbjct: 329 SLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDML 387
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTV 478
+G+L ++ + AG + +TV
Sbjct: 388 CRAGKLDTAFELRDSMQKAGLFPNVRTV 415
>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 425
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL++ M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL++ M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
urticoides]
Length = 423
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%)
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y+TLI E AL+ + ME DL Y +I+L L D S+AI FS+LK
Sbjct: 2 YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
+GF P Y MI +F + + R + E + AG + + LL + E++
Sbjct: 62 SSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENK 118
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 74 AMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREI 133
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 134 KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 184
>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+ M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YTTLI K A+ M + C +L Y +IK+
Sbjct: 343 GIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 402
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F +L+ AGF P + ++ +F +G ++ V KE + AG+ ++ T V L I
Sbjct: 403 MAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL--I 460
Query: 485 EKESRIG 491
SR G
Sbjct: 461 SSYSRCG 467
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 6/188 (3%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLN 332
K NL A K + + LD ++ ++ GKN K +++L+ E +N
Sbjct: 570 KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKE----SAIN 625
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
LS ++M + RL E++ SG P Y T+I++ + + +EA +
Sbjct: 626 LSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRL 685
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M+ S D+ Y + +K +V+ + AI + G P Y ++ +
Sbjct: 686 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 745
Query: 453 SGRLAKCR 460
+G+L +
Sbjct: 746 NGKLTDAK 753
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 67/139 (48%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M V I K S+F+ G PT++ YTTL+ + +K + L ++ +E
Sbjct: 17 TKLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEE 76
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ D + +I F ++ A++ F K+KE+G PT + +I+ + +G+ +
Sbjct: 77 NGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEE 136
Query: 459 CRDVCKEAEMAGFKLDKQT 477
+ + + G K +++T
Sbjct: 137 ALKLLEFLQDGGVKPNQRT 155
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
G VE F+ G V YT LI + + +A+ + M + C D Y +
Sbjct: 469 GAVE-FFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTL 527
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
I + RA SK+KEAGF P + +I F +L + ++ KE E AG
Sbjct: 528 ISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGI 587
Query: 472 KLDKQTVVELL 482
K D T L+
Sbjct: 588 KPDGVTYNTLI 598
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P VV TL+ + A+ M+ + Y +I+ F
Sbjct: 438 LFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFC 497
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+N+I +A+ F ++ EAG P +Y +I +G+L + V + + AGF D
Sbjct: 498 NVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPD 555
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA+++ + LF +G P ++Y TLI K A V+ M+
Sbjct: 490 TALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKE 549
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ D+ ++ V+I F N + A +++ AG P Y +I F +G +
Sbjct: 550 AGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFST 609
Query: 459 CRDVCKEAEMAGF 471
+ K+ G
Sbjct: 610 AHRLMKKMVKEGL 622
>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 22/190 (11%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
GRM D L+ G NPD + + + G++ D
Sbjct: 244 GRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPD---------------------- 281
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
E L + G PTV+ +T +I+ ++ +AL V +M +SNC DL AY V+I
Sbjct: 282 EAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLI 341
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ + A S++ G P IY +I + G++ +V + E G +
Sbjct: 342 NVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCR 401
Query: 473 LDKQTVVELL 482
+ T L+
Sbjct: 402 PNAWTYSSLI 411
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 90/239 (37%), Gaps = 23/239 (9%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EATAKGFVKGG 277
+Q L PD++ L + + E + L KGV+ + GF K G
Sbjct: 466 EQNGLTPDEQAYNVLTHALCKSGRAE-----EAYSFLVRKGVVLTKVTYTSLVDGFSKAG 520
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
N A L+ + G D Y+ L+ L K L + L D + LS
Sbjct: 521 NTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKK-------LNEALSILDQMTLSGVK 573
Query: 338 C-----TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
C T I+ I+ K +S+F+ SG P+ YT I S + EA +
Sbjct: 574 CNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHL 633
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ ME D+ Y V I + + RA ++ +A P Y Y +++ F+
Sbjct: 634 IGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFL 692
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD-- 329
G ++ G A K+ D G +D Y L+ L +N D +TL +LG D
Sbjct: 627 GLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN-DLTDEAITLFHKLGAMDCK 685
Query: 330 -DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + A+ KV R + LF + SG P V Y +I + L E E
Sbjct: 686 FDITILNTMINALYKVRRREE----ANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEE 741
Query: 389 ALTVVWNMEASNCLFDLPAYRV---VIKLFVALNDISRAIRYFSKL 431
A T+ +ME S C P+ R+ +I++ + DI +A Y SK+
Sbjct: 742 ADTMFSSMEKSGC---APSSRLLNDIIRMLLQKGDIVKAGYYMSKV 784
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM--EASNCLFDLPAYRVV 411
V+ L H + P + Y T+I S + + +EAL +V M E C D+ ++ V
Sbjct: 179 VDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTV 238
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
I F ++S+A F+++ + G P Y ++
Sbjct: 239 IHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIV 274
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 114/323 (35%), Gaps = 29/323 (8%)
Query: 168 ISLARDIKGLDSHKDVAEVLDKCGRFLRKGS------LSFTVRELGHMNLPE--RALQTF 219
IS IK L E LD R ++G +SF G E +A F
Sbjct: 196 ISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLF 255
Query: 220 CWAQKQPHLFPDDRLLASTVEVLARHHEL-KVPFKLENFVSLASKGV------LEATAKG 272
Q + PD S V+ L + + K F L V KGV A G
Sbjct: 256 -NEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVD---KGVEPDGVTYNAIIHG 311
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRD 329
+ G+ K + K+ G + D ++ + L G++ D + + + D
Sbjct: 312 YSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPD 371
Query: 330 DLNLSQQDCTAIMKVGIRLQ-KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
++ S I+ G + +F + +LFH G LI + E
Sbjct: 372 IVSYS------ILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDE 425
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A+ V M+ ++ Y +I F + ++ A+ FS++ G P +Y +I
Sbjct: 426 AMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIH 485
Query: 449 IFMASGRLAKCRDVCKEAEMAGF 471
F G L K ++ E G
Sbjct: 486 GFCMHGDLVKAKEFISEMMSKGL 508
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 47/125 (37%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+R + + +FH SG + Y L+ EA+T+ + A +C FD+
Sbjct: 629 LRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDI 688
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+I + A F+ + +G P Y MIR + G + + +
Sbjct: 689 TILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSS 748
Query: 466 AEMAG 470
E +G
Sbjct: 749 MEKSG 753
>gi|413953459|gb|AFW86108.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 388
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 10/201 (4%)
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE-- 355
P+ Y LI LGK +Y L L EL +++ S A+M L K G ++
Sbjct: 46 PAAYCSLIDALGK-AKRYDLACELFQEL--KENCGSSSARVYAVMIK--HLGKAGRLDDA 100
Query: 356 -SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
++F G P V Y L+ EAL+ + M+ C+ D+ +Y +++
Sbjct: 101 INMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNG 160
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
RA+ S +K++ P Y ++ +G + + KE GF+ D
Sbjct: 161 LAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYD 220
Query: 475 KQTVVELLQI--EKESRIGTI 493
T +L+ + E I TI
Sbjct: 221 LITYSSILEAIGKSEEAIATI 241
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ + T SG P+VV Y IH ++ EAL VV M D+ +Y +I F
Sbjct: 411 ILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFC 470
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ RA + ++ E G P Y +I+ RL + D+ +E G D+
Sbjct: 471 RKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEF 530
Query: 477 TVVELLQ 483
T L+
Sbjct: 531 TYTTLIN 537
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 48/129 (37%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
E ++ S P V Y LI S + ++ L ME + CL ++ Y +I
Sbjct: 199 EEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDA 258
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+ + I A + G P Y +I G + + ++ +E GF D
Sbjct: 259 YCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPD 318
Query: 475 KQTVVELLQ 483
+ T LL
Sbjct: 319 EVTYNTLLN 327
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 8/231 (3%)
Query: 259 SLASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP 312
S++SKG+ G + G++K AW++L G D Y L+ K
Sbjct: 274 SMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEG 333
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
+ + ++ + + R+ ++ S TA++ + + F G P
Sbjct: 334 NFHQALVIHAEMV--RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 391
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
YTTLI + EA ++ M S + Y I L + A+ ++
Sbjct: 392 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 451
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
E G P Y +I F G L + + +E G D T L+Q
Sbjct: 452 EKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 502
>gi|242060055|ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
gi|241931148|gb|EES04293.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
Length = 574
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 114/281 (40%), Gaps = 25/281 (8%)
Query: 173 DIKGLDSHKDVAEVLDKCGRF-LRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPD 231
D GLDS L G L + ++ +REL P +AL F WA++Q
Sbjct: 157 DAAGLDSR------LADIGLLPLTETTVITVLREL--REYPIKALAFFRWAEQQQGYTHS 208
Query: 232 DRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEAT----AKGFVKGGNLKLAWKLLM 287
+ VL R + + L + A V T ++ F K ++ A +L
Sbjct: 209 SVAYNAMARVLGREESVPEFWDLIQEIKAAGMHVDIDTYLKLSRNFQKRHMVREAVELYE 268
Query: 288 VAKDG----GRMLDPSIYAKLILELGKNPDKYML--VMTLLDELGQRDDLNLSQQDCTAI 341
+ DG + P I ++ LG++PD ++ V+ + + L A+
Sbjct: 269 LMMDGPFKPSQQDGPIIIRRI--SLGRSPDLELVNRVVNKFEAVWGVKTKELLDGVHRAL 326
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
G KF + G P V Y+ L++ K +A V+ MEA C
Sbjct: 327 TSNG----KFDEAAEIVQTMRDQGHQPDNVTYSQLVYGLCKAGKLEDARKVLDEMEAEGC 382
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ DL + ++I+ + + D+ RA++YF+++ E G D+
Sbjct: 383 VPDLKTWTLLIQGYCSAGDVDRAVQYFTEMIEKGLDADADL 423
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 8/166 (4%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP---DKYMLVMTLLDELGQ 327
G + G L+ A + K+ G LD Y LI + + Y L+ + E+G
Sbjct: 361 SGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEM-KEVGI 419
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R D+ + K G F V+ L G P+V+ + TL+H K
Sbjct: 420 RPDVCTYNTLLSGSCKAG----DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKID 475
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
EAL ++ +M+ S + Y +I D+ AI F ++KE
Sbjct: 476 EALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKE 521
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+ G+ LFH G P +MY T+I + +A ++ +M+ + D
Sbjct: 329 LHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDT 388
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
AY ++I F + A ++KE G P Y ++ +G A
Sbjct: 389 KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFA 440
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 88/249 (35%), Gaps = 35/249 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-------------------LEL 308
G+ + G L WKL+ V K G + IY +I +
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQ---------------DCTAIMKVGIRLQKFGV 353
G PD ++ TL+D +R D+ + + TAI+ ++
Sbjct: 789 GILPDT-VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 847
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
LFH G +P V +T LI+ ++A V +M + C ++ Y +I
Sbjct: 848 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 907
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
D+ A ++ + G P Y ++ SG + + + E E AG
Sbjct: 908 GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 967
Query: 474 DKQTVVELL 482
D T L+
Sbjct: 968 DTVTYTTLM 976
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 8/197 (4%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNL 333
G +K A LL++ + G D Y+ ++ G+ + L+ E+ +R L
Sbjct: 703 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI-----EVMKRKGLKP 757
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ +I+ + R+ K E F G P V+YTTLI R A
Sbjct: 758 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 817
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
+ M + + D+ Y +I F + D+ A + F ++ G P + ++I + +
Sbjct: 818 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 877
Query: 454 GRLAKCRDVCKEAEMAG 470
G + V AG
Sbjct: 878 GHMKDAFRVHNHMIQAG 894
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 32/224 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
+ G K GN++ A KL+ + G D Y TL+D +
Sbjct: 939 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT-----------------TLMDAYCK 981
Query: 328 RDDLNLSQQDCTAIMKVGIR--LQKFGVV-------------ESLFHWFTHSGRDPTVVM 372
+++ +Q+ ++ G++ + F V+ E L +W G P
Sbjct: 982 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1041
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
+ +L+ + A + +M + D Y ++K ++ A F ++K
Sbjct: 1042 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 1101
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
GF + Y +I+ F+ + + R+V + G DK+
Sbjct: 1102 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKE 1145
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 96/261 (36%), Gaps = 22/261 (8%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA------KGFVKGG 277
K+ L P+ + S + +L R K+ E F + +G+L T GF K G
Sbjct: 751 KRKGLKPNSYIYGSIIGLLCRI--CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 808
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLS 334
+++ A K D Y +I ++G + L + + + D + +
Sbjct: 809 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 868
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE---KKCREALT 391
+ K G F V + +G P VV YTTLI E E L
Sbjct: 869 EL-INGYCKAGHMKDAFRVHNHMIQ----AGCSPNVVTYTTLIDGLCKEGDLDSANELLH 923
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+W + +F Y ++ +I A++ + + AG Y ++ +
Sbjct: 924 EMWKIGLQPNIF---TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 980
Query: 452 ASGRLAKCRDVCKEAEMAGFK 472
SG + K +++ KE G +
Sbjct: 981 KSGEMDKAQEILKEMLGKGLQ 1001
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 8/166 (4%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP---DKYMLVMTLLDELGQ 327
G + G L+ A + K+ G LD Y LI + + Y L+ + E+G
Sbjct: 361 SGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEM-KEVGI 419
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R D+ + K G F V+ L G P+V+ + TL+H K
Sbjct: 420 RPDVCTYNTLLSGSCKAG----DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKID 475
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
EAL ++ +M+ S + Y +I D+ AI F ++KE
Sbjct: 476 EALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKE 521
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+ G+ LFH G P +MY T+I + +A ++ +M+ + D
Sbjct: 329 LHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDT 388
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
AY ++I F + A ++KE G P Y ++ +G A
Sbjct: 389 KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFA 440
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 104/240 (43%), Gaps = 16/240 (6%)
Query: 254 LENFVSLASKGVLEATAKGFVKG----GNLKLA-----WKLLMVAKDGGRMLDPSIYAKL 304
+E F S+ + +LE+ G +KG GN + A W L + ++ D S+ +
Sbjct: 151 IEFFNSVKGE-LLESDITGLLKGLDLSGNWERAFLLFEWVWLNFGSENMKVDDQSV--EF 207
Query: 305 ILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS 364
++++ +Y + L D + ++ +L + CT ++ R K+ +F +
Sbjct: 208 MVKMLGRESQYSIASKLFDII-PVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKET 266
Query: 365 GRDPTVVMYTTL--IHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
G DPT+V Y + ++ ++ + L ++ M + FD VI +
Sbjct: 267 GLDPTLVTYNVMLDVYGKMG-RAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILD 325
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A R+F LK G+ P Y M+++F +G + ++ KE E + D T EL+
Sbjct: 326 EARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELV 385
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 20/263 (7%)
Query: 213 ERALQTFCWAQ---KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL--------A 261
ERA F W ++ DD+ + V++L R + + KL + + + A
Sbjct: 180 ERAFLLFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKA 239
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVM 319
VL A + + G K A ++ K+ G LDP++ Y ++ GK + +++
Sbjct: 240 CTTVLHA----YARTGKYKRAIEIFEKMKETG--LDPTLVTYNVMLDVYGKMGRAWSMIL 293
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
LLDE+ + L + CT ++ R F +G P Y +++
Sbjct: 294 ELLDEMRSKG-LEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQV 352
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
EAL ++ ME +NC D Y ++ +V + G P
Sbjct: 353 FGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPN 412
Query: 440 YDIYRDMIRIFMASGRLAKCRDV 462
Y +I + +G K +V
Sbjct: 413 AITYTTVINAYGKAGDADKALEV 435
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%)
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
Q + L +++ + +R QK + SG P +V Y +LI C
Sbjct: 650 QNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDC 709
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+A ++ +++ S D+ +Y VIK F + AIR S++ G P +
Sbjct: 710 WKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTF 769
Query: 447 IRIFMASGRLAKCRDVCK 464
+ + +G A+ +V +
Sbjct: 770 MSCYAGNGLFAEADEVIR 787
>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 426
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 339 TAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
T VGI R ++FG + L G P VV Y LIHS EA++V M
Sbjct: 381 TYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRM 440
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + C D Y +I + + A+ + K++EA P Y +I +G L
Sbjct: 441 QEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHL 500
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 57/133 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L+ ++G P V Y+ ++ EA + M+ N + D P Y +++ L+
Sbjct: 541 LYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWG 600
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ ++ ++ ++ + AG CP ++ F+ RL+ ++ + G + Q
Sbjct: 601 KVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQ 660
Query: 477 TVVELLQIEKESR 489
T LL E+R
Sbjct: 661 TYTLLLSCCTEAR 673
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%)
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G+ K E L + G PTV+ +T LI+ ++ +AL V NM +SNC D
Sbjct: 363 GLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLD 422
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L AY V+I + + + A +++ G P Y +I + G + +V K
Sbjct: 423 LQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFK 482
Query: 465 EAEMAG 470
E G
Sbjct: 483 LMEHEG 488
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 23/239 (9%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EATAKGFVKGG 277
+Q L PD++ + L + + E + L KGV+ + GF K G
Sbjct: 555 EQNGLTPDEQAYNVLTDALCKSGRAE-----EAYSFLVRKGVVLTKVTYTSLVDGFSKAG 609
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
N A L+ + G D Y+ L+ L K L + L D + +S
Sbjct: 610 NTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKK-------LNEALSILDQMTVSGVK 662
Query: 338 C-----TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
C T I+ I+ K +SLF+ SG P+ YT I S + EA +
Sbjct: 663 CNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHL 722
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ ME D+ Y + I + I RA ++ +A P Y +++ F+
Sbjct: 723 IGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFL 781
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T+I+ ++ G +F H G P Y +LI+ + +KK +A+ ++ M+
Sbjct: 462 TSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQE 521
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ Y +I+ ++ A R F +++ G P Y + SGR
Sbjct: 522 DGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGR 578
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L + G + Y+ L+ + +KK EAL+++ M S ++ AY ++I +
Sbjct: 617 LIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMI 676
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
A F+++ +G P+ Y I + GR+ + + E E G D
Sbjct: 677 KEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVV 736
Query: 477 T 477
T
Sbjct: 737 T 737
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
C + M + K F G P +V Y+ L+H +E + L + +ME
Sbjct: 335 CNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSME 394
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ + D Y ++I + + A+ F++++E G P Y +I F GRLA
Sbjct: 395 GNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLA 454
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQ 483
D + G K D L+Q
Sbjct: 455 DAMDKFNQMIAMGLKPDTIVYNSLIQ 480
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM--EASNCLFDLPAYRVV 411
V L H G +P + Y+T++ S + + + AL ++ M ++ C ++ +Y V
Sbjct: 174 VNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTV 233
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
I F ++S+A F ++ + G P Y I + + K V ++ GF
Sbjct: 234 IHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGF 293
Query: 472 KLDKQT 477
+ DK T
Sbjct: 294 EPDKVT 299
>gi|326524037|dbj|BAJ97029.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 599
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
L++EL R L LS + TA++ RL K + + +G P VV++ TL+
Sbjct: 180 LVEELQPR--LPLSLRHYTALLYGWCRLAKLDEAKHVLARMKAAGVAPDVVVFNTLLAGF 237
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
+++ + +A + ME +C + +Y +++ + + +R F +++ G P
Sbjct: 238 VADGRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSKGRVDEVMRVFVEMRRKGCTPDS 297
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
Y ++ F +GRL++ + G ++D
Sbjct: 298 VTYGTLVTAFCKAGRLSQGYEFLDSMSRDGLRVD 331
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS +EA+ V M+ + C D
Sbjct: 371 RAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRV 430
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL-AKCRDVCKE 465
Y +I + + A+ + +++EAG P Y +I +G L A R C
Sbjct: 431 TYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFC-- 488
Query: 466 AEMAG 470
EM G
Sbjct: 489 -EMVG 492
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/216 (18%), Positives = 87/216 (40%), Gaps = 2/216 (0%)
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL 333
K G L +A + ++ G D Y+ +I LGK + +GQ NL
Sbjct: 440 AKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNL 499
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ ++ + + + + L+ ++G P V Y+ ++ EA V
Sbjct: 500 VTFNI--MIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVF 557
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M+ N + D P Y +++ L+ ++ +A +++ + +AG P ++ F+
Sbjct: 558 AEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRV 617
Query: 454 GRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
R+++ ++ + G QT LL ++R
Sbjct: 618 HRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDAR 653
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 10/225 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQR 328
G K GN+ A++L D G +P +Y LI G+ D + + ++ G +
Sbjct: 470 GLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHK-IFKEMNRRGCQ 528
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
DL L + K G + + E + + G P V Y+ LIH + RE
Sbjct: 529 PDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGY----GFLPDVRSYSILIHGLTKAGQARE 584
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
++ M+ D AY V+ F + +A ++K PT Y +I
Sbjct: 585 TSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIID 644
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G +L+ +V I+ ++G I
Sbjct: 645 GLAKIDRLDEAYMLFEEAKSKGIELN--VIVYSSLIDGFGKVGRI 687
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L G + V ++TTL+ + E + AL +V ++ S D+ Y V I F
Sbjct: 204 LLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFG 263
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
++ A ++F +LK G P Y MI + +GRL++ ++ + E
Sbjct: 264 KAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQME 314
>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
Length = 700
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLL 322
L A + + GN+++A L A+ +DP ++ LI G N D + + +
Sbjct: 245 TLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEM 304
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
LG + +L + + ++ K Q + + L +G +P Y LI +
Sbjct: 305 KSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLIS----NGFEPNWSTYAALIRAYGR 360
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-PTYD 441
+ +AL + M+ + Y ++ + + + A F +K +G C P
Sbjct: 361 ARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSW 420
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ +I ++ GR+++ +E AGF+ + L+Q
Sbjct: 421 TFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQ 462
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 108/265 (40%), Gaps = 15/265 (5%)
Query: 210 NLPERALQTFCWAQKQPH--LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE 267
LP+RA++ W +K P L PD+ LA+ ++ R +++ L + +
Sbjct: 222 GLPKRAVE---WFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDP 278
Query: 268 ATAKGFVK----GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLD 323
T ++ GN + K G + IY +L+ +GK + M D
Sbjct: 279 VTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKD 338
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
+ + N S A+++ R + ++ G + TV++Y TL+
Sbjct: 339 LISNGFEPNWSTY--AALIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADI 396
Query: 384 KKCREALTVVWNMEASN-CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
EA + +M++S C D + +I ++ +S A +++EAGF PT +
Sbjct: 397 GYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFV 456
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAE 467
+I+ + G+ + DV + E
Sbjct: 457 LTSLIQCY---GKAKQVDDVVRTFE 478
>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
[Coelocarpum swinglei]
Length = 440
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + R + E AG +
Sbjct: 61 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 SSYSALLTMYVENK 134
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFRDARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+ L+ + KK EAL+V M CL DL ++I ++
Sbjct: 107 LISEMRTAGVMPNASSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 167 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 130/368 (35%), Gaps = 46/368 (12%)
Query: 133 HRLRPLELPTPKKRVCLASSRASICKQVYKNPSFLI----------SLARDIKGLDSHKD 182
+RLR L K +A V NPS + SL + L
Sbjct: 32 NRLRFLSGGNRKPSSVAGKIKAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGS 91
Query: 183 VAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242
+A LD L + +E +R+L+ F + Q+Q P++ + + +L
Sbjct: 92 IARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLL 151
Query: 243 ARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
R L LE F + S+GV + Y
Sbjct: 152 GREGLLDKC--LEVFDEMPSQGVSRSVFS-----------------------------YT 180
Query: 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR--LQKFGVVESLFHW 360
LI G+N +Y + LLD + + D ++ S ++ R L G++ LF
Sbjct: 181 ALINAYGRNG-RYETSLELLDRM-KNDKISPSILTYNTVINACARGGLDWEGLL-GLFAE 237
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
H G P +V Y TL+ + EA V M + DL Y +++ F L
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ + S++ G P Y ++ + SG + + V + + AG + T
Sbjct: 298 LEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 481 LLQIEKES 488
LL + +S
Sbjct: 358 LLNLFGQS 365
>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 426
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 83 NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
micromera]
Length = 434
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 61 RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 TSYSTLLTMYXENK 134
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKXCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ KK EAL+V M C DL ++I ++
Sbjct: 107 LISEMKTAGVMPNTTSYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 167 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 20/221 (9%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K GN+K A +L + D Y+ L+ D Y LV +E+ + + +
Sbjct: 412 GFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLM-------DGYCLV----NEVNKAESI 460
Query: 332 --NLSQQDCTA-IMKVGIRLQKFGVVE------SLFHWFTHSGRDPTVVMYTTLIHSRLS 382
+S + TA + I + F ++ LF H P V+ Y++LI
Sbjct: 461 FNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCK 520
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ AL +V M D+ Y ++ + + +AI +KLK G P +
Sbjct: 521 SGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNT 580
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
Y +++ SG+L R V ++ + G+ LD ++Q
Sbjct: 581 YTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQ 621
>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
Length = 1039
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E L + G PTV+ +T +I+ +K +AL V M +S C DL AY V+I
Sbjct: 376 AEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLIS 435
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ + + + A +++ G P IY +I + G++ +V K E G +
Sbjct: 436 VLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRP 495
Query: 474 DKQTVVELL 482
+ T L+
Sbjct: 496 NAWTYSSLI 504
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 108/266 (40%), Gaps = 16/266 (6%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EATAKGFVKGG 277
+Q L PD++ + L + + E + L KGV+ + GF K G
Sbjct: 559 EQNGLTPDEQAYNVLTDALCKSGRAE-----EAYSFLVKKGVVLTKVTYTSLVDGFSKAG 613
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
N + A L+ + G D Y+ L+ L K K +++LD++ R + +
Sbjct: 614 NTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQK-KLNEALSILDQMTLRG-VKGNIVA 671
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
T I+ I+ K +S+F+ SG P+ + YT I S + EA ++ ME
Sbjct: 672 YTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEME 731
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D+ Y V I + + A ++ +A P Y Y +++ F+ LA
Sbjct: 732 RNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMS-LA 790
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQ 483
V KLD TV +LL+
Sbjct: 791 NAHYVDTSGMWNWIKLD--TVWQLLE 814
>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
Length = 700
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLL 322
L A + + GN+++A L A+ +DP ++ LI G N D + + +
Sbjct: 245 TLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEM 304
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
LG + +L + + ++ K Q + + L +G +P Y LI +
Sbjct: 305 KSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLIS----NGFEPNWSTYAALIRAYGR 360
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-PTYD 441
+ +AL + M+ + Y ++ + + + A F +K +G C P
Sbjct: 361 ARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSW 420
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ +I ++ GR+++ +E AGF+ + L+Q
Sbjct: 421 TFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQ 462
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 107/265 (40%), Gaps = 15/265 (5%)
Query: 210 NLPERALQTFCWAQKQPH--LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE 267
LP RA++ W +K P L PD+ LA+ ++ R +++ L + +
Sbjct: 222 GLPNRAVE---WFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDP 278
Query: 268 ATAKGFVK----GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLD 323
T ++ GN + K G + IY +L+ +GK + M D
Sbjct: 279 VTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKD 338
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
+ + N S A+++ R + ++ G + TV++Y TL+
Sbjct: 339 LISNGFEPNWSTY--AALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADI 396
Query: 384 KKCREALTVVWNMEASN-CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
EA + +M++S C D + +I ++ +S A +++EAGF PT +
Sbjct: 397 GYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFV 456
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAE 467
+I+ + G+ + DV + E
Sbjct: 457 LTSLIQCY---GKAKQVDDVVRTFE 478
>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 426
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK++GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 83 NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
C DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 143 IKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 426
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDIVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 5/179 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G + G ++ AW L K + Y L+ L KN + M L L + D
Sbjct: 422 GLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKN-NHLSEAMELFHYL-ENHDF 479
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
S Q ++ + +K + LF+ +H G +P V+ YT +IH + A
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD 539
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP---TYDIYRDMI 447
+ ME C +L + +++ F +++ + + ++ E F P T I D++
Sbjct: 540 LFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLL 598
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G+M + + KL+++ G++PD + TL+D ++ ++ ++ GI
Sbjct: 322 GKMEEANHLLKLMIQRGESPDTFT-YNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVS 380
Query: 353 VVESLFHWFTHSGRD----------------PTVVMYTTLIHSRLSEKKCREALTVVWNM 396
L + + SGR PTV+ Y TL+ E K R+A + M
Sbjct: 381 Y-NVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ + + Y +++ N +S A+ F L+ F P+ I+ +I
Sbjct: 440 KVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490
>gi|168036356|ref|XP_001770673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678034|gb|EDQ64497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 717
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
V+ Y L+ S +K ++A +VV +ME + D+ +Y +I + D + A+ YF
Sbjct: 441 NVITYNILLKGYCSARKLQKAHSVVKDMEEAGVALDVVSYNTLINGCIETGDNAAALDYF 500
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGR 455
K++E G P+ Y +++ F +G+
Sbjct: 501 KKMRETGISPSAVSYTTLMKAFGRNGQ 527
>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%)
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
+ F VE++F G P V+ YTT++H+ ++ EAL V M+ + CL D Y
Sbjct: 275 KDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFY 334
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I + I A F +++ G C +Y MI A + + + E
Sbjct: 335 SSLIYVLSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEG 394
Query: 469 AGFKLDKQTVVELLQI 484
K D +T LL++
Sbjct: 395 DSCKPDVKTYAPLLKM 410
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 99/270 (36%), Gaps = 27/270 (10%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFV 274
A F WA+ Q L +++L + + + + L KG+ G+V
Sbjct: 105 AFGVFIWAKNQTSYVHTPELYDYMIDILGKFKKFSLMWSLVE----QMKGL-----NGYV 155
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN-- 332
+L A K++ + D + I + G + D+ L L+D L + D+
Sbjct: 156 ---SLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREAL-NVLMDALVKEGDVEDA 211
Query: 333 ----LSQQDCTAIMKVGIRL--------QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
L +DC + + + F V + G P VV Y+ I +
Sbjct: 212 HSAFLEFKDCITLDSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAY 271
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
+K R V M+ C ++ Y V+ ++ A+ + K+K G P
Sbjct: 272 CEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDS 331
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
Y +I + SGR+ DV ++ E G
Sbjct: 332 KFYSSLIYVLSQSGRIKDAWDVFEDMEKQG 361
>gi|302792086|ref|XP_002977809.1| hypothetical protein SELMODRAFT_52561 [Selaginella moellendorffii]
gi|300154512|gb|EFJ21147.1| hypothetical protein SELMODRAFT_52561 [Selaginella moellendorffii]
Length = 419
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 9/218 (4%)
Query: 275 KGGNLKLAWKLLMVAKD-GGRMLDPSIYAKLILELGKNPDKY---MLVMTLLDELGQRDD 330
K G AWKL + K+ G D Y+ LI G D L + ++D G D
Sbjct: 108 KNGRRYAAWKLFLAMKEEDGISPDCVTYSILITNTGDGSDIAEPCRLFLEMMDS-GCSPD 166
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ + + K G Q F G+ +V ++T++I S + + A
Sbjct: 167 IVVHSSMVNLLFKCGDVRQTL----DFFKQMAQRGKPLSVAVFTSIIFSYVRSGRMDSAY 222
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ + + Y +I F ++D+ A F ++K F P YR M+ +
Sbjct: 223 LLFRGLRDVSGYVHQRIYNALICGFANIDDVLHAFSLFKEMKANSFAPDQVTYRTMVALL 282
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+L + +D +E + GF D T +L+ + E+
Sbjct: 283 ARHAKLFQAQDTLEEMKANGFTPDLVTYNKLMAMLGET 320
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 16/251 (6%)
Query: 217 QTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATA 270
++F ++ +FPD + + R L+ F+L + S++ KG+ A
Sbjct: 274 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD--SMSGKGLKPCVFTYNAII 331
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
G K G A +L G D + Y L++E +N D M + DE+ +
Sbjct: 332 NGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN-DNMMDAERIFDEMPSQGV 390
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKKCR 387
+ D + + L K G ++ +F ++G P V+YT LI
Sbjct: 391 V----PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 446
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EAL V M C+ D+ Y ++ +S A F+++ E G P + + +I
Sbjct: 447 EALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 506
Query: 448 RIFMASGRLAK 458
+ G + K
Sbjct: 507 NGYSKDGNMNK 517
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 8/176 (4%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
A+KL G LD Y LI L+ GK P + T+ D + LS
Sbjct: 348 AYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTM-I 406
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+ K G + G +F G P V+Y+ LIH +K AL ++ M+
Sbjct: 407 DGLSKAG----RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 462
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ C D Y ++I D+ A +F ++ EAG P Y +I +G
Sbjct: 463 AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAG 518
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 79/206 (38%), Gaps = 2/206 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G L+ A LL D G D Y LI LGK + L E+ R L
Sbjct: 303 GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE-AYKLFKEMASRG-L 360
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
L TA+++ ++ K S++ T G P VV +T+I + A+
Sbjct: 361 ALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVR 420
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ +MEA + Y +I + A+ +++K+A P Y +I
Sbjct: 421 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 480
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQT 477
SG + R E AG K D T
Sbjct: 481 KSGDVEAARAFFDEMLEAGCKPDVYT 506
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 16/207 (7%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G VK G + A L G +D Y ++ L KN K + L++++
Sbjct: 233 GLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNK-KIQEAVALMEKI------ 285
Query: 332 NLSQQDCT-------AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ CT A++ ++ + L +G P VV YT+LI EK
Sbjct: 286 --TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 343
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ EA + M + D Y +I+ + I +A + + G P
Sbjct: 344 RSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLS 403
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGF 471
MI +GR+ + K E G
Sbjct: 404 TMIDGLSKAGRIGAAVRIFKSMEARGL 430
>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 426
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 91/245 (37%), Gaps = 33/245 (13%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVMTLLDELGQR 328
KG + GNL +++LL + +D G + IY LI KN D + L + E+G
Sbjct: 170 KGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLV 229
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVE-------------------------------SL 357
+ + K G++ F + E L
Sbjct: 230 ANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDL 289
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G + VV Y TLI E++ EA +V M+ + +L Y +I F
Sbjct: 290 FDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCD 349
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ ++ +A +LK G P+ Y +I + +G D+ +E E G K T
Sbjct: 350 VGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVT 409
Query: 478 VVELL 482
L+
Sbjct: 410 CTVLI 414
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA-KLILELGKNPDKYMLVMTLLDELGQRDD 330
GF GNL A LL K G L PS+ +++E + V L E+ R
Sbjct: 346 GFCDVGNLDKASSLLDQLKSNG--LSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRG- 402
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
++ S+ CT ++ +RLQ+ ++ G P V +Y LIH + +E+
Sbjct: 403 ISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESS 462
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ +M + Y +I + ++ RA+R +++ G P Y +I +
Sbjct: 463 KLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVL 522
Query: 451 MASGR 455
G+
Sbjct: 523 CKDGK 527
>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 426
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 100 SLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|218197431|gb|EEC79858.1| hypothetical protein OsI_21342 [Oryza sativa Indica Group]
Length = 1013
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 249 KVPFKLENFVSLASKGVLEATAKGFVKGGN---LKLAWKLLMVAKD----GGRMLDPSIY 301
+ F E+ L +K A A V+ G L+ A KL A GG + + +
Sbjct: 595 EAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFETASTSFPVGGSVYNAMVD 654
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361
A + GK + Y L M L+D+ D + +S ++ + +KF E++ +
Sbjct: 655 A--LCRCGKTEEAYRLFMELIDQGHNGDAVTIS-----ILVTHLTKQEKFQEAENIIYRC 707
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
H + V+Y T I S L K A+++ M +S + + ++I ++ +
Sbjct: 708 LHDEAELDTVVYNTFIKSMLESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKL 767
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+A+ FS +E G Y +M+ + +G+
Sbjct: 768 EKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGK 801
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 350 KFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G++E F R P Y+ LI K EAL + M+ + +
Sbjct: 287 KEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNY 346
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
V+ L+ D S+A+ FS++++ P IY ++RI+ G + + +E
Sbjct: 347 TCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEI 406
Query: 467 EMAGFKLDKQTVVELLQI 484
+ AG D+QT V + Q+
Sbjct: 407 DKAGLLSDEQTYVAMAQV 424
>gi|449463314|ref|XP_004149379.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Cucumis sativus]
Length = 802
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 235 LASTVEVLARHHELKVPFKLENFV-------SLASKGVLEATAKGFVKGGNLKLAWKLL- 286
+++ VE++ ELK+ K E+ V + + + A + + K G + A +
Sbjct: 291 VSTYVEIIDSFGELKLWQKAESLVGNKRLKLAAVDRKIWNALIQAYAKSGCYERARAVFN 350
Query: 287 MVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI 346
+ +DG SI L + N K + V ++ EL Q +S+ ++
Sbjct: 351 TMMRDGPSPTVISINGLLQALIADNRLKELYV--VVQEL-QDMGFKISKSSVLLMLDAFA 407
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R V+ ++H +G PT+ +Y ++I K+ R+ ++ ME + DL
Sbjct: 408 RDGNIFEVKKIYHGMIAAGYLPTMHLYRSMIELLCKGKRVRDVEAMLSEMEETGFRPDLS 467
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
VIKL+V + D A R + + E G P D Y +I ++ CRD C+
Sbjct: 468 ILNSVIKLYVGVEDFRNASRVYHLILETGLTPDEDTYNSLIIMY--------CRD-CRPE 518
Query: 467 E 467
E
Sbjct: 519 E 519
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F+ G PTV+ L+ + +++ + +E VV ++ + +++ F
Sbjct: 347 AVFNTMMRDGPSPTVISINGLLQALIADNRLKELYVVVQELQDMGFKISKSSVLLMLDAF 406
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+I + + + AG+ PT +YR MI + R+ + E E GF+ D
Sbjct: 407 ARDGNIFEVKKIYHGMIAAGYLPTMHLYRSMIELLCKGKRVRDVEAMLSEMEETGFRPD 465
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
ESL SG DPTV L+ S S +EA V+ +++A+ D Y VI
Sbjct: 591 ESLLVMMKESGIDPTVATMHLLMVSYGSSGHPKEAEKVLNDLKATGMDLDTLPYSSVIDA 650
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
++ D S I+ +K G P Y I+ IR
Sbjct: 651 YLRNKDYSAGIQKLMAMKADGIEPDYRIWTCCIR 684
>gi|55295905|dbj|BAD67773.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 1013
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 249 KVPFKLENFVSLASKGVLEATAKGFVKGGN---LKLAWKLLMVAKD----GGRMLDPSIY 301
+ F E+ L +K A A V+ G L+ A KL A GG + + +
Sbjct: 595 EAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFETASTSFPVGGSVYNAMVD 654
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361
A + GK + Y L M L+D+ D + +S ++ + +KF E++ +
Sbjct: 655 A--LCRCGKTEEAYRLFMELIDQGHNGDAVTIS-----ILVTHLTKQEKFQEAENIIYRC 707
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
H + V+Y T I S L K A+++ M +S + + ++I ++ +
Sbjct: 708 LHDEAELDTVVYNTFIKSMLESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKL 767
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+A+ FS +E G Y +M+ + +G+
Sbjct: 768 EKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGK 801
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 350 KFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G++E F R P Y+ LI K EAL + M+ + +
Sbjct: 287 KEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNY 346
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
V+ L+ D S+A+ FS++++ P IY ++RI+ G + + +E
Sbjct: 347 TCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEI 406
Query: 467 EMAGFKLDKQTVVELLQI 484
+ AG D+QT V + Q+
Sbjct: 407 DKAGLLSDEQTYVAMAQV 424
>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
citrodora]
Length = 435
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 2 GLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 62 RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNT 121
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 122 ASYSTLLTMYVENK 135
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F +
Sbjct: 50 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARA 107
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 108 LISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYG 167
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G Y ++R++
Sbjct: 168 QLGMAKEADKLFWGMRKMGIETNVVSYNTLLRVY 201
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 135/347 (38%), Gaps = 43/347 (12%)
Query: 138 LELPTPKKRVCLASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKG 197
LE P+K LA RA +Q + L+ I LD H+ V E +D L
Sbjct: 4 LEPVKPRKMSKLALKRAKDWRQRVQR------LSDAICRLDEHEFVRETVDGWKEQLAPT 57
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENF 257
L + V+ + + + +RAL+ + P+ R+LA + VL R ++ P +
Sbjct: 58 DLCYVVKRVANTSW-QRALELYECLNVARWYAPNPRMLAVMLSVLGRANQ---PGLAQEL 113
Query: 258 VSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML 317
A + GN + LM S+YA+ + +
Sbjct: 114 FDRAESSI-----------GNCVQVYNSLM-----------SVYAR-----HGDWNSVQQ 146
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
++ + + G R DL A + G+ + G+ SL +G P + Y TLI
Sbjct: 147 LLCRMQDRGCRPDLVTFNIVIKARTRGGM---QEGLASSLLQDVYAAGLRPDTITYNTLI 203
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ + +A+ + M+ C D+ Y +I ++ + A F ++E GF
Sbjct: 204 SACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFT 263
Query: 438 PTYDIYRDMIRIFMASGRL---AKCRDVCKEAEMAGFKLDKQTVVEL 481
P Y ++ F GR+ + R + ++A + ++ T++ +
Sbjct: 264 PDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHM 310
>gi|357120648|ref|XP_003562037.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Brachypodium distachyon]
Length = 807
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V F G P + + TLIH + + ++V ME CL D Y ++I
Sbjct: 272 VSDAFSQMLREGVVPDIFTFNTLIHVWGKHHRMEQVSSLVRMMEEFQCLPDTRTYNILIS 331
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
L+ +++I A YF K+K P R ++ + G + K + KE + +G +
Sbjct: 332 LYREIDEIDVAEFYFCKMKAENLVPDTVSCRTLLYGYSTRGMVTKAEALIKEMDESGLVI 391
Query: 474 DKQT 477
D+ T
Sbjct: 392 DEYT 395
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 363 HSGRDPT-VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
H+ P V Y+ +I S + + M S D Y ++I + + ++
Sbjct: 521 HAAELPIDCVPYSVIISSFAKKDNLHMVECLFREMATSGICADAYVYSILIDAYAEVGNV 580
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+A YF + +AG C + IY +I+++ +G LA+ + K
Sbjct: 581 HQAAAYFGLVTKAGLCESSTIYNSLIKLYTKAGYLAEAHETYK 623
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 20/267 (7%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKL 281
L PD ++ L R + V +KL S+ S + A F K G +
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNVAYKL--LTSMNSFDLEPDCLTFTAIINAFCKQGKADV 494
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDE--LGQRDDLNLSQQ 336
A L + G LD LI +GK D ++ TL+ L LN+
Sbjct: 495 ASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILD 554
Query: 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
+ K+ L G + L G P+VV YTTL+ + + ++ M
Sbjct: 555 MLSKGCKLKEELAMLGKINKL-------GLVPSVVTYTTLVDGLIRSGDISGSFRMLELM 607
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ S CL ++ Y ++I + A + S ++++G P + Y M++ ++ +G+L
Sbjct: 608 KLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKL 667
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + + G++L+ + LL+
Sbjct: 668 DRALETVRAMVERGYELNDRIYSSLLR 694
>gi|147828501|emb|CAN77580.1| hypothetical protein VITISV_015346 [Vitis vinifera]
Length = 347
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P VV +T +I + + + +EA+ V M S + + Y V+IK
Sbjct: 204 LFAQIKDHGHMPDVVAHTAVIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLA 263
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ A +Y ++ G P Y + F ++ + R+ ++ + GF D++
Sbjct: 264 GDAKLGEAKKYVLEMMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEK 323
Query: 477 TVVELLQ 483
V E+L+
Sbjct: 324 AVREILK 330
>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
macrostachya]
Length = 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 10 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 70 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVE 129
Query: 488 SR 489
++
Sbjct: 130 NK 131
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 46 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 103
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 104 LISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 163
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 164 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 197
>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
lycioides]
Length = 429
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 9 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 68
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 69 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVE 128
Query: 488 SR 489
++
Sbjct: 129 NK 130
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 45 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 102
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 103 LISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 162
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 163 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 196
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 348 LQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
K G+++ +W RD PTVV YTTLIH+ L KK A + M A C +
Sbjct: 534 FSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
+ Y +I + +I +A + +++++ P D+Y
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMY 632
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 22/243 (9%)
Query: 249 KVPFKLENFVSLASKG----VLEATA--KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
KV E F + +KG V+ TA G+ K GN++ A ++ + + D +Y
Sbjct: 574 KVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYF 633
Query: 303 KLILELGKNPDKYMLVMTLLDELGQ-------RDDLNLSQQD-CT-------AIMKVGIR 347
K+ + + P+ + L+D L + RD L D C A++ +
Sbjct: 634 KIKNNVAEKPN-VVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCK 692
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
K + +FH G +P V Y++LI +K+ L V+ M ++C ++
Sbjct: 693 AAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVI 752
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y +I + A + ++E G P Y MI F +G++ KC ++ +E
Sbjct: 753 YTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMG 812
Query: 468 MAG 470
G
Sbjct: 813 SKG 815
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 105/282 (37%), Gaps = 13/282 (4%)
Query: 192 RFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVP 251
+F +K + V L + PE ++ F WA +Q + + ++V R +VP
Sbjct: 131 QFRQKLNPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVP 190
Query: 252 FKLENFVSLASKGVL----EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
+ + K VL + + G +A + L KD G Y L+
Sbjct: 191 EEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQV 250
Query: 308 L--GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365
D LV + ELG D A+ KVG + ++E
Sbjct: 251 FLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK-------ED 303
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
P ++Y +I EA+ + M +++C+ ++ YR+++ + + R
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCK 363
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
R S + G P+Y I+ ++ + S + + K+ E
Sbjct: 364 RILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKME 405
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 348 LQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
K G+++ +W RD PTVV YTTLIH+ L KK A + M A C +
Sbjct: 534 FSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
+ Y +I + +I +A + +++++ P D+Y
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMY 632
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 22/243 (9%)
Query: 249 KVPFKLENFVSLASKG----VLEATA--KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
KV E F + +KG V+ TA G+ K GN++ A ++ + + D +Y
Sbjct: 574 KVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYF 633
Query: 303 KLILELGKNPDKYMLVMTLLDELGQ-------RDDLNLSQQD-CT-------AIMKVGIR 347
K+ + + P+ + L+D L + RD L D C A++ +
Sbjct: 634 KIKNNVAEKPN-VVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCK 692
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
K + +FH G +P V Y++LI +K+ L V+ M ++C ++
Sbjct: 693 AAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVI 752
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y +I + A + ++E G P Y MI F +G++ KC ++ +E
Sbjct: 753 YTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMG 812
Query: 468 MAG 470
G
Sbjct: 813 SKG 815
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 105/282 (37%), Gaps = 13/282 (4%)
Query: 192 RFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVP 251
+F +K + V L + PE ++ F WA +Q + + ++V R +VP
Sbjct: 131 QFRQKLNPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVP 190
Query: 252 FKLENFVSLASKGVL----EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
+ + K VL + + G +A + L KD G Y L+
Sbjct: 191 EEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQV 250
Query: 308 L--GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365
D LV + ELG D A+ KVG + ++E
Sbjct: 251 FLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK-------ED 303
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
P ++Y +I EA+ + M +++C+ ++ YR+++ + + R
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCK 363
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
R S + G P+Y I+ ++ + S + + K+ E
Sbjct: 364 RILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKME 405
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/336 (19%), Positives = 130/336 (38%), Gaps = 45/336 (13%)
Query: 149 LASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGH 208
+A +I K + +P ++ A D GL ++V E D RF G L++
Sbjct: 32 VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVE--DVLNRFRNAGLLTY------- 82
Query: 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA 268
+ F W++KQ H R +E A+ + K+ + L N ++ K +L
Sbjct: 83 --------RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLIN--AMRKKKMLNV 132
Query: 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328
+ ++M + +D +IYA ++E P + LL L +
Sbjct: 133 E------------TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKS 180
Query: 329 DDLNLSQQDCTAI--------MKVGIRLQKFG------VVESLFHWFTHSGRDPTVVMYT 374
++ +Q+ + I L+ +G +F +G P +V Y+
Sbjct: 181 KNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYS 240
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
++ + EAL +V +M+ S C Y V++ + N + A+ F +++ +
Sbjct: 241 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 300
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
G ++ +I F + R+ V KE + G
Sbjct: 301 GMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKG 336
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V SL + G +P V YT+LI + +S + REA+ V ME C L Y
Sbjct: 13 KVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYN 72
Query: 410 VVIKLFVALN-DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V++ ++ + ++ F +K AG P Y +I + V ++ +
Sbjct: 73 VILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKS 132
Query: 469 AGFKLDKQTVVELLQIEKESR 489
GF DK T LL + +SR
Sbjct: 133 MGFVPDKVTYNTLLDVYGKSR 153
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M IR K ++F+ T G PT++ YTTL+ + K+ +++ +E
Sbjct: 47 TKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEE 106
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ D + +I F + A++ F K+KE G PT + +I+ F GR
Sbjct: 107 NGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGR 163
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 9/192 (4%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLL 322
+ A F G + A K+ K+ G S + LI G P + M LL
Sbjct: 115 LFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHE---AMKLL 171
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
+ + Q ++ +++ +++ + ++ H +SG P +V Y TL +
Sbjct: 172 EMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQ 231
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYR---VVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
+ A ++ M+ N P R ++I+ + +++ A+R+ K+KE G P
Sbjct: 232 NGETDNAERLILKMQQYNNKVK-PNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPN 290
Query: 440 YDIYRDMIRIFM 451
++ +I+ ++
Sbjct: 291 PVVFNSLIKGYL 302
>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 63/146 (43%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
C+++M + K E +F+ +GR P +V+Y+ ++H E + + + M
Sbjct: 313 CSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVKMIDLCEVMA 372
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ DLP + ++I + + A+ +F + + G P Y +I F GR+
Sbjct: 373 RDGVVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMD 432
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ E G LD + + +++
Sbjct: 433 DAMEKFSEMIDMGVPLDTEVYMCMVE 458
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 123/363 (33%), Gaps = 86/363 (23%)
Query: 124 ERPLPLPLPHRLRPLELPTPKKRVCLASSRASICKQVYKNPSFLISLARDIKGLDSHKDV 183
ER PLP RL L P+ + C S A S L S+++ + D
Sbjct: 81 ERRFPLP-KQRLGALARYPPEGKPCDVSEAAH---------SLLASISKQ----EDSSDA 126
Query: 184 AEVLDKCGR--FLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEV 241
E+L+ L L + V+ LG ++AL+ F W +K AS + V
Sbjct: 127 TELLEFIAGELVLTDSELVYFVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSV 186
Query: 242 LARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY 301
L H +L P LE F SL +D LD Y
Sbjct: 187 LGNHEQL--PAALELFESLK----------------------------QDESYSLDVYAY 216
Query: 302 AKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359
LI L + D+ + + + GQR + + G R + ++SLF
Sbjct: 217 TSLISILSRARRFDEGITLFETMQREGQRGNAVTYN---VMLDLYGKRGDSWDRIQSLFQ 273
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
P Y T+I + + C+EAL
Sbjct: 274 EMKDLEISPDDYTYNTMITACIQNSHCQEAL----------------------------- 304
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
R F ++KEAG CP Y ++ ++ G + ++ E E AG + T
Sbjct: 305 ------RLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYN 358
Query: 480 ELL 482
EL+
Sbjct: 359 ELI 361
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 49/107 (45%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P Y TLI + ++ +AL M +NC ++ Y ++I ++ + +
Sbjct: 384 GLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDM 443
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
++ F ++E P + +++ F G L + +V +E + AG+
Sbjct: 444 MKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGY 490
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 8/195 (4%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRD 329
+ KGG K A +LL+ + G + Y +LI G + L +LL + D
Sbjct: 329 YGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPD 388
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ CT I R +++ F + P +V Y LI +K +
Sbjct: 389 EFTY----CTLISAFN-RAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDM 443
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ V M+ NC DL + ++K F ++ F ++K AG+ P D + +I
Sbjct: 444 MKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIEC 503
Query: 450 FMASGRLAKCRDVCK 464
+ G + D+ K
Sbjct: 504 YGRCGYVDYSVDIYK 518
>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
DEFECTIVE 2217; Flags: Precursor
gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 15/286 (5%)
Query: 213 ERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE-LKVPFKLENFVS-LASKGVLEATA 270
+ AL F WA+KQP P D + L + + + + E V +S G L A
Sbjct: 186 DAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNA 245
Query: 271 KGFV-----KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL 325
V K L++A+ A++ G +D Y L++ L N + + +
Sbjct: 246 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMM-LFLNKGLPYKAFEIYESM 304
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR---DPTVVMYTTLIHSRLS 382
+ D L D + + L K G +++ F F P+ ++++L+ S
Sbjct: 305 EKTDSL----LDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGK 360
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ ++ V M+ + +I + + A+R + ++K++GF P + +
Sbjct: 361 AGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGL 420
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
Y +I SG+L V K+ E AGF T LL++ S
Sbjct: 421 YTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGS 466
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 12/226 (5%)
Query: 254 LENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILELGKN 311
+E SL E K G L A+KL K+ R L PS +++ L+ +GK
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKE--RKLRPSFSVFSSLVDSMGKA 361
Query: 312 P--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
D M V + G R + + K G K L+ SG P
Sbjct: 362 GRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAG----KLDTALRLWDEMKKSGFRPN 417
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+YT +I S K A+TV +ME + L Y ++++ + A++ ++
Sbjct: 418 FGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYN 477
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD-VCKEAEMAGFKLD 474
+ AG P Y ++ + +A+ RL + E + G+ +D
Sbjct: 478 SMTNAGLRPGLSSYISLLTL-LANKRLVDVAGKILLEMKAMGYSVD 522
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 13/248 (5%)
Query: 232 DRLLASTVEVLAR---HHE-LKVPFKLENFVSLASKGVLE-ATAKGFVKGGNLKLAWKLL 286
D LL V L + H E +++ FKL LA+ V A G + GN++ +++L
Sbjct: 465 DSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVL 524
Query: 287 MVAKDGGRMLDPSIYAKLIL---ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343
+ G +LD Y LI + GK + + L ++ + Q D + +MK
Sbjct: 525 KQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYN-----FLMK 579
Query: 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
+ K V L H G P V Y L+ + +A+ N++
Sbjct: 580 GLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVEL 639
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
Y ++I + + +++ A + +K G PT Y +I GR+ + +++
Sbjct: 640 SSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIF 699
Query: 464 KEAEMAGF 471
+E G
Sbjct: 700 EEMRNEGL 707
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 85/206 (41%), Gaps = 18/206 (8%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G +++ ++Y I + G +PD + +L+ + +D+N + + + G R +
Sbjct: 228 GNIVEANLYVSKIFQAGLSPDSFTYT-SLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVS 286
Query: 353 VVESLFHWFTHSGR----------------DPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
++ H +GR PTV YT +IH+ + E + + M
Sbjct: 287 YT-TIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEM 345
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+C ++ Y V++ + + R +++ E G P+ Y +IR + GR+
Sbjct: 346 RERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRI 405
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELL 482
++ E + +++T EL+
Sbjct: 406 EAALEILGLMESNNCRPNERTYNELI 431
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 4/217 (1%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
K G+ A+KLL + K+ G + D Y+ I L K+ + L + L ++ + +
Sbjct: 471 KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKS-KRMEEACDLFNSLKEK-GIKAN 528
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ TA++ + K SL P Y +LI+ E K +E L++V
Sbjct: 529 EVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVE 588
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
NM + Y ++I+ + D A R F+++ G P Y I + SG
Sbjct: 589 NMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSG 648
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
+ + + AG D T L I R+G
Sbjct: 649 NVKEAEGMMARMIEAGVMPDSLTYT--LLISAYERLG 683
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 13/250 (5%)
Query: 225 QPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGN 278
Q L PD S + R++++ +K+ N + +KG G + G
Sbjct: 242 QAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNM--MPNKGCRRNEVSYTTIIHGLCEAGR 299
Query: 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC 338
+ L ++ Y +I L N D+ + M L +E+ +R +
Sbjct: 300 IDEGISLFKKMREDDCYPTVRTYTVIIHALFGN-DRNLEGMDLFNEMRERS-CEPNVHTY 357
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + +K + + G P+VV Y LI E + AL ++ ME+
Sbjct: 358 TVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMES 417
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL-- 456
+NC + Y +I F + +A+ SK+ E+ P+ Y +I + +G
Sbjct: 418 NNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDS 477
Query: 457 -AKCRDVCKE 465
K D+ KE
Sbjct: 478 AYKLLDLLKE 487
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 10/230 (4%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGG 277
K+ L PD + ++ L + ++ L F SL KG+ A G K G
Sbjct: 486 KENGLVPDQWTYSVFIDTLCKSKRMEEACDL--FNSLKEKGIKANEVMYTALIDGHCKAG 543
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
+ A LL + + S Y LI + K K +++++ + + + +
Sbjct: 544 KIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKE-GKVQEGLSMVENMSKMG-VKPTVAT 601
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
T +++ +R F +F+ G P V YT IH+ + +EA ++ M
Sbjct: 602 YTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMI 661
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ + D Y ++I + L A ++ +AG P++ I+ ++I
Sbjct: 662 EAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711
>gi|356564958|ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 39/235 (16%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A A+ + +++ W ++ K G LD Y K+ +L +N + M L EL
Sbjct: 269 AVARVLPRAESIEEFWSVIEEMKRVGHELDIDTYIKITRQLQRN--RMMEDAVKLYELMM 326
Query: 328 RDDLNLSQQDCTAIMK----------------------VGIRLQK--------------- 350
QDC ++K G L K
Sbjct: 327 DGSCKPLVQDCNMLLKSISANDKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSLTSAGN 386
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
F E++ ++G +P + Y+ ++ ++ EA V+ +ME+S C+ D+ + +
Sbjct: 387 FDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSRCIPDIKTWTI 446
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+I+ + N++ +A+ F+K+ E G P D+ + F++ R+ ++ E
Sbjct: 447 LIQGHCSANEVDKALLCFAKMIEKGCDPDADLLDVLADGFLSQKRIEGAYELVAE 501
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 6/222 (2%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V A G +KGG+ + A ++ K + Y LI GK YM + +
Sbjct: 278 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEM 337
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
Q+ N+ TA++ R E +F +G +P V Y L+ +
Sbjct: 338 RSQKCKPNICT--FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG 395
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLF--VALNDISRAIRYFSKLKEAGFCPTYDI 442
A + M+ C D +Y +++ + L++ ++A+ F +K G PT
Sbjct: 396 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV--FEVMKRLGITPTMKS 453
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ ++ + +G++AKC ++ + +G K D + +L +
Sbjct: 454 HMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 495
>gi|224079734|ref|XP_002305931.1| predicted protein [Populus trichocarpa]
gi|222848895|gb|EEE86442.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P V +YTT+I+ E EAL NME C D +Y V+I+ F+
Sbjct: 32 LFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFL 91
Query: 417 ALNDISRAIRYFSKLKEAGF 436
D SRA+ ++++ GF
Sbjct: 92 QHKDESRAVHLIGEMRDRGF 111
>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 991
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF SG V + T+IH+ + EA +++ ME D Y +++ L
Sbjct: 326 NLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLH 385
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
DI A+ Y+ K+++ G P +R ++ I +A+ V E + ++D+
Sbjct: 386 ADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDE 445
Query: 476 QTVVELLQI 484
+V ++Q+
Sbjct: 446 HSVPVIMQM 454
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SLF G DP + +Y LIH EA+ ++ ME+ N D+ Y ++I
Sbjct: 325 SLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGL 384
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ ++ A R F K+K P+ Y +I + + + D+C E +G
Sbjct: 385 CIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASG 439
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%)
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
T SG +P ++ ++TLI + + + A+ + + M + D+ Y +I ++
Sbjct: 436 TASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANM 495
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
A+R +S + EAG P + ++ F GRL+ D +E
Sbjct: 496 KEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQE 539
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF H G P ++ Y TL+ + S +A V M S + D Y+ ++ F
Sbjct: 174 NLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTF 233
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
N + R ++++ G P Y +I + +G + V K+ + G D
Sbjct: 234 AGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDV 293
Query: 476 QTVVELLQI 484
+T LL+I
Sbjct: 294 ETYSTLLRI 302
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV + L+ + ++K +A+ ++ M + D Y ++ +
Sbjct: 596 IFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYA 655
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
AL D +A YF+K++ G Y +++ SGR+ V + EM K+ +
Sbjct: 656 ALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTR--EMNAQKIPRN 713
Query: 477 TVVELLQIEKESRIGTI 493
T V + I+ +R G I
Sbjct: 714 TFVYNILIDGWARRGDI 730
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 14/198 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R +DPS +Y LI +G++ ++ + + ++E G L T + VG
Sbjct: 322 ARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSL------VTYSIVVG-GF 374
Query: 349 QKFGVVESLFHWFTHSGRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
KFG E+ WF + T +Y +I++ A +V ME L
Sbjct: 375 AKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPL 434
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + + + + F +LKE GF P+ Y +I ++ G+++K +V K
Sbjct: 435 DIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKM 494
Query: 466 AEMAGFKLDKQTVVELLQ 483
+ G K + +T L+
Sbjct: 495 MKSVGIKHNMKTYSMLIN 512
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 4/170 (2%)
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
K + V ++ +G + ++ +K+ F V E + G P VV+Y
Sbjct: 487 KALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIK----DGLKPDVVLY 542
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
+I + A+ +V M+ C + +I F ++ RA+ F ++
Sbjct: 543 NNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRR 602
Query: 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G PT + ++ + ++ K ++ E +AG D+ T ++
Sbjct: 603 SGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMH 652
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 16/251 (6%)
Query: 217 QTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATA 270
++F ++ +FPD + + R L+ F+L + S++ KG+ A
Sbjct: 378 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD--SMSGKGLKPCVFTYNAII 435
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
G K G A +L G D + Y L++E +N D M + DE+ +
Sbjct: 436 NGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN-DNMMDAERIFDEMPSQGV 494
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKKCR 387
+ D + + L K G ++ +F ++G P V+YT LI
Sbjct: 495 V----PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 550
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EAL V M C D+ Y ++ +S A F+++ E G P + + +I
Sbjct: 551 EALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 610
Query: 448 RIFMASGRLAK 458
+ G + K
Sbjct: 611 NGYXKDGNMNK 621
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M I K +++FH T G PT++ YTTL+ + +K+ + ++ +
Sbjct: 64 TKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVAD 123
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ D +I F + A++ F K+KE G PT Y +I+ F GR
Sbjct: 124 NGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGR 180
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 80/187 (42%), Gaps = 1/187 (0%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
+L A F G + A K+ K+ G S Y LI G Y M LL+
Sbjct: 132 LLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYE-SMKLLEM 190
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+GQ +++ + + +++ +K ++ H SG P VV Y T+ +
Sbjct: 191 MGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNG 250
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ +A ++ M+ + + ++I + +++ A+R+ ++KE G P ++
Sbjct: 251 ETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFN 310
Query: 445 DMIRIFM 451
+I+ ++
Sbjct: 311 SLIKGYL 317
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 332 NLSQQDCT------AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
++ Q C+ +I+ G+ R QK L + G P VV Y +L+
Sbjct: 77 GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
K +EA+ + M C D Y V+I F D+ A R F ++ E G PT Y
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196
Query: 445 DMIRIFMASGRLAKCRDVCKE 465
++ F G + + + K+
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKD 217
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 6/222 (2%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V A G +KGG+ + A ++ K + Y LI GK YM + +
Sbjct: 240 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEM 299
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
Q+ N+ TA++ R E +F +G +P V Y L+ +
Sbjct: 300 RSQKCKPNICT--FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG 357
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLF--VALNDISRAIRYFSKLKEAGFCPTYDI 442
A + M+ C D +Y +++ + L++ ++A+ F +K G PT
Sbjct: 358 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV--FEVMKRLGITPTMKS 415
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ ++ + +G++AKC ++ + +G K D + +L +
Sbjct: 416 HMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 457
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 105/255 (41%), Gaps = 18/255 (7%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF-KLENFVSLASKGVLEATA 270
P AL+ F W +KQP+ + + +++LA++ +K + +E + + G +
Sbjct: 65 PLTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVL 124
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
G G N +++ KLL +L KLILE K ++V + G D
Sbjct: 125 VGIGCGRNSEVSVKLL-------DLLIQVFAKKLILE------KCLMVFYKMVNNGLLPD 171
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ ++C ++K+ VE ++ PT+V + T++ SR E + A+
Sbjct: 172 V----RNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAV 227
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ M C + +Y V++ + RA ++ G + Y +IR F
Sbjct: 228 EVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGF 287
Query: 451 MASGRLAKCRDVCKE 465
+ D+ +E
Sbjct: 288 CKKEMFEEANDLRRE 302
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 81/217 (37%), Gaps = 8/217 (3%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELG 326
+GF + GNL +A +L G D Y I L+LG NP K + + G
Sbjct: 424 VRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLG-NPSKAFGMKEEMKAEG 482
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
DL + K+G F L G P V YT++IH+ L
Sbjct: 483 FPPDLITYNVLINGLCKLG----NFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLL 538
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
R+A V +M + Y V+I + + A +YF ++++ G P Y +
Sbjct: 539 RKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNAL 598
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
I + ++ E E G +K T L+
Sbjct: 599 IYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN 635
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFG------VVESLFHWFTHSGRDPTVVMYTTLIHS 379
G +DD+ + C ++ I ++ F + + LF G P + YTT I
Sbjct: 403 GMKDDM-IKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVG 461
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
L +A + M+A DL Y V+I L + A K++ G P
Sbjct: 462 ELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPD 521
Query: 440 YDIYRDMIRIFMASGRLAKCRDV 462
+ Y +I + SG L K +V
Sbjct: 522 HVTYTSIIHAHLISGLLRKAEEV 544
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 8/187 (4%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
K G A ++ + G M D +Y LI LGK K + LL+++ ++ +
Sbjct: 129 KAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQG-KVDEALELLEDMNRKGIM--- 184
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR---DPTVVMYTTLIHSRLSEKKCREALT 391
DC V L G E + +F R P VV Y TL++ ++ EA
Sbjct: 185 -PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACD 243
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ M+A+ C+ DL + +I + A+ ++L + G P IY +I F
Sbjct: 244 LFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFC 303
Query: 452 ASGRLAK 458
SG++ K
Sbjct: 304 RSGQVDK 310
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
G + D+N+ C ++ RL L H T V Y+ L+ + +
Sbjct: 77 GLQADVNV----CNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGR 132
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
+AL V NM+ + C+ D Y V+I + A+ + G P Y
Sbjct: 133 AAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNI 192
Query: 446 MIRIFMASGRLAK 458
+I + + GR K
Sbjct: 193 VIDVLSSCGRYEK 205
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YTTLI K A+ M + C +L Y +IK+
Sbjct: 343 GMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 402
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F + + AGF P + ++ +F +G ++ V KE + AG+ ++ T V L I
Sbjct: 403 MAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL--I 460
Query: 485 EKESRIG 491
SR G
Sbjct: 461 SSYSRCG 467
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 6/188 (3%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLN 332
K NL A K + + LD ++ ++ GKN K +++L+ E +N
Sbjct: 570 KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKE----SAIN 625
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
LS ++M + RL E++ SG P Y T+I++ + + +EA +
Sbjct: 626 LSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRL 685
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M+ S D+ Y + +K +V+ + AI + G P Y ++ +
Sbjct: 686 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 745
Query: 453 SGRLAKCR 460
+G+L +
Sbjct: 746 NGKLTDAK 753
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 19/210 (9%)
Query: 290 KDGGRMLDPSIYAKLILEL-GKNPD--KYMLVMTLLDELGQRDDLNLSQQD--------- 337
KDG +L+ ++ K +E+ G PD Y +++ LD G+ D + +
Sbjct: 325 KDG--LLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPN 382
Query: 338 -CT--AIMKV-GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
CT A++K+ G+R KF + ++F F +G P +V + TL+ E V
Sbjct: 383 LCTYNALIKMHGVR-GKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVF 441
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M+ + + + Y +I + A++ + ++ EAG P Y ++
Sbjct: 442 KEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 501
Query: 454 GRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
GR + + E E K D+ + LL
Sbjct: 502 GRWEQAEKLFAEMEERDCKPDEYSYSSLLH 531
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M + I K + +F+ T G PT++ YTTL+ + +K+ + +++ +E
Sbjct: 75 TKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK 134
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ D + +I F ++ A++ F K+K+ G PT + +I+ + +G +
Sbjct: 135 NGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEE 194
Query: 459 C 459
C
Sbjct: 195 C 195
>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
montevidensis]
Length = 418
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%)
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y+TLI E AL+ + ME DL Y +I+L L D S+AI FS+LK
Sbjct: 2 YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
+GF P Y MI +F + + R + E + AG + + LL + E++
Sbjct: 62 RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENK 118
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 33 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 90
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 91 LIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 150
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 151 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 184
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE--LGKNPDKYMLVMTLLDELGQRD 329
G K G + A + + + G + +Y LI + KN ++ + +++ + + G
Sbjct: 378 GLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMEL 437
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D++L A++ LQK +SL + G P V+YT ++ + +K EA
Sbjct: 438 DVSLYG----ALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEA 493
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ ++ M S ++ Y ++ I AI +F+K+ + G P Y ++
Sbjct: 494 IALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDG 553
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+GRL K + E G LD L+
Sbjct: 554 LCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLM 586
>gi|356521196|ref|XP_003529243.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Glycine max]
Length = 601
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 23/225 (10%)
Query: 254 LENFVSLASKGVLEATAKG-----FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI--- 305
L+ F + KG+ E + F G + +A +L+ AK + DP +Y KL+
Sbjct: 278 LDYFREMTKKGISEYSIYSKLIYSFASLGEVDVAEELVREAKGKTTIKDPEVYLKLVHMY 337
Query: 306 LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK--FGVVESLFHWFTH 363
+E G L+ L+ + + +D ++ DC V +K F +F
Sbjct: 338 IEEG-------LLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFSAAVKVFEELIS 390
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN---CLFDLPAYRVVIKLFVALND 420
G +P V Y ++I++ + +A V ME C++ AY +I ++
Sbjct: 391 KGNEPGQVTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVY---AYSTMIVMYGRTGR 447
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ A++ +K+KE G P IY +I + L + + KE
Sbjct: 448 VRSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKE 492
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 6/241 (2%)
Query: 224 KQPHLFPDDRLLASTVEVL--ARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKL 281
+Q L PD+ A + L A E F + V+L +K GF K GN
Sbjct: 444 EQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVAL-TKVYYTTLIDGFSKAGNTDF 502
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
A L+ D G D Y+ L+ L K + + +LD++ R + + T +
Sbjct: 503 AATLIERMIDEGCTPDSYTYSVLLHALCKQK-RLNEALPILDQMSLR-GIKCTIFAYTIL 560
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ +R K + +++ T SG P+ YT I+S E + +A ++ ME
Sbjct: 561 IDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGV 620
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
D+ Y ++I + I RA ++ A P Y Y +++ + G LA R
Sbjct: 621 APDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLK-HLLKGNLAYVRS 679
Query: 462 V 462
V
Sbjct: 680 V 680
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%)
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G+ QK E L + G PTVV +T LI+ +K +AL + M +S C D
Sbjct: 252 GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 311
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L + +I + + + A +++ G P Y +I + SG++ +V K
Sbjct: 312 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 371
Query: 465 EAEMAGFKLDKQTVVELL 482
E G + + T L+
Sbjct: 372 MMERDGCQPNAWTYNSLM 389
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 113/279 (40%), Gaps = 14/279 (5%)
Query: 222 AQKQPHLFPDDRLLASTVEVLARHHELKVP---FKLENFVSLASKGVLEAT-AKGFVKGG 277
A K+ LFP+ R + ++ L + +L F+ ++ + G + G K G
Sbjct: 295 AMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQG 354
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLS 334
+ A+++ D ++ + +Y LI + + D + + ++ G DL L
Sbjct: 355 RVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRS-GCSPDLMLL 413
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ K G + +LF G P Y+ LIHS + RE + +
Sbjct: 414 NTYMDCVFKAGETEKG----RALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYY 469
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+ C+ D AY VI F +++A + ++K G PT Y ++
Sbjct: 470 AMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKID 529
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G +L++ L I+ ++G +
Sbjct: 530 RLDEAYMLFEEAKSNGIELNQVIYSSL--IDGFGKVGRV 566
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 3/175 (1%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G + +AWK K G + D Y ++ L K ++ + + +++ Q +
Sbjct: 141 FGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCK-ANRLDEAVEIFEQMEQNRQVP 199
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
+ T IM G KF SL G P+VV Y ++ + K +AL +
Sbjct: 200 CAYAYNTMIMGYG-SAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRI 258
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
M+ + + +LP Y ++I + ++ A + +KEAG P MI
Sbjct: 259 FEEMK-RDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMI 312
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 24/248 (9%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG-VLEATA-----KGFVKGG 277
K PD R + + L + + ++L + ++ +G VL+ A GF K G
Sbjct: 437 KARGFLPDTRSYSILIHSLVKAGFARETYEL--YYAMKDQGCVLDTRAYNTVIDGFCKSG 494
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP---DKYMLVMTLLDELGQRDDLNLS 334
+ A++LL K G Y ++ L K + YML E + + + L+
Sbjct: 495 KVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLF-----EEAKSNGIELN 549
Query: 335 QQDCTAIM----KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
Q ++++ KVG + + V+E + G P V + L+ + ++ EAL
Sbjct: 550 QVIYSSLIDGFGKVGRVDEAYLVMEEMMQ----KGLTPNVYTWNCLLDGLVKAEEINEAL 605
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+M+ C + Y ++I + ++A ++ ++++ G P Y MI
Sbjct: 606 VCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGL 665
Query: 451 MASGRLAK 458
SG +A+
Sbjct: 666 AKSGNVAQ 673
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF+ G + V + TTLI E + AL+++ M+++ D+ Y V I F
Sbjct: 82 ALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCF 141
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
+ + A ++F ++K G P Y M+ + + RL + ++ ++ E
Sbjct: 142 GKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQME 193
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T++M V + + +F + + P Y T+I S K EA +++ A
Sbjct: 170 TSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRA 229
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF--CPTYDIYRDMIRIFMASGRL 456
C+ + AY ++ +A+R F ++K PTY+I +I + +G +
Sbjct: 230 KGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNI---IIGMLCKAGNV 286
Query: 457 A---KCRDVCKEA 466
K RD KEA
Sbjct: 287 EAAFKVRDAMKEA 299
>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
herrerae]
Length = 433
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 10 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E + AG + + LL + E
Sbjct: 70 FSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVE 129
Query: 488 SR 489
++
Sbjct: 130 NK 131
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F +L +G P Y+TL+ + KK EAL+V M
Sbjct: 86 NAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMRE 145
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 146 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 197
>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 549
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 111/300 (37%), Gaps = 17/300 (5%)
Query: 183 VAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQP-HLFPDDRLLASTVEV 241
V + L+ CG +S + + +P AL F WA+ Q ++ P D L V++
Sbjct: 118 VVQALNDCGVNPTNNLISQLLNRFCNDWVP--ALGLFTWAKHQTGYVHPPD-LYDLMVDI 174
Query: 242 LARHHELKVPFKL----ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD 297
L R + ++L EN S ++ + + GN + A + + G D
Sbjct: 175 LGRRKKFSFMWELVKEMENLEGYVSLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKD 234
Query: 298 P---SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
++ +++ G Y M +D +++ Q ++ + +K
Sbjct: 235 IEALNVLMDALVKEGSVEHAYSAFMEF------KDSIHVDFQSFNILLHGYCKARKLDDA 288
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ G P VV YT I K R + M+ +C ++ Y + +
Sbjct: 289 RKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHA 348
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+++A+ + +K P Y +I + SGRL DV ++ + G D
Sbjct: 349 LGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPD 408
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 75/195 (38%), Gaps = 41/195 (21%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDEL 325
A GF K GNL+ A K+L V + GR P++ Y+ L+ L K D L
Sbjct: 189 ALIDGFCKSGNLEKAMKMLGVME--GRKCVPNVVTYSSLLHGLCKAGD-----------L 235
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
Q DL F T G P VV YTTLIH + K
Sbjct: 236 DQALDL--------------------------FRRMTSKGCVPNVVTYTTLIHGLCAAHK 269
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
A ++ M A+ C D +Y ++ + L I A + F ++ P Y
Sbjct: 270 VDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTC 329
Query: 446 MIRIFMASGRLAKCR 460
++R F + RL + R
Sbjct: 330 LVRGFCNASRLEEAR 344
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 332 NLSQQDCT------AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
++ Q C+ +I+ G+ R QK L + G P VV Y +L+
Sbjct: 77 GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
K +EA+ + M C D Y V+I F D+ A R F ++ E G PT Y
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196
Query: 445 DMIRIFMASGRLAKCRDVCKE 465
++ F G + + + K+
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKD 217
>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 426
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G PT Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 321 LLDELGQRDDLNLSQQDCT------AIMKVGIRLQKFGVV---ESLFHWFTHSGRDPTVV 371
LL ELG R D L T A K G+ + + +LF + G + +
Sbjct: 154 LLRELGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIF 213
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y TL+ + + A ++ M + + ++ Y VI + + A+ F+++
Sbjct: 214 TYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM 273
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
K A Y ++ I+ GR + +VCKE E +G K D T LL
Sbjct: 274 KFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALL 324
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 19/234 (8%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKG-----VLEATAKGFVKGGNLKLAWK 284
PD + + +L R E + E F SL K V +G+ + GN+ A +
Sbjct: 162 PDKIAFSILISILCR--ERRASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAER 219
Query: 285 LLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCT 339
+ K G + P++Y I+ G+ + + +LD Q + + +
Sbjct: 220 VFGEMKVAG--IKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYN----- 272
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
++M++ ++ + V +++ G +P V Y LI + ++ +A+ V+ M
Sbjct: 273 SLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKK 332
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
C + + + L D++ A R + K+KE Y ++++F+AS
Sbjct: 333 GCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVAS 386
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V++YT L+ EA V M+ + ++ Y +VI I+RA
Sbjct: 195 EPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHD 254
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
F+++ +AG P Y ++RI + +GR K V + + G + D T L++
Sbjct: 255 IFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIE 311
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 3/176 (1%)
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
V+ + +D S + ++ ++ F V D TV + L+
Sbjct: 77 VLAFFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILM 136
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ EA+ ME NC D A+ ++I + S+A +F LK+ F
Sbjct: 137 RRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDK-FE 195
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
P +Y +++R + +G +++ V E ++AG K + T + I+ R G I
Sbjct: 196 PDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYS--IVIDSLCRCGQI 249
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/336 (19%), Positives = 130/336 (38%), Gaps = 45/336 (13%)
Query: 149 LASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGH 208
+A +I K + +P ++ A D GL ++V E D RF G L++
Sbjct: 68 VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVE--DVLNRFRNAGLLTY------- 118
Query: 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA 268
+ F W++KQ H R +E A+ + K+ + L N ++ K +L
Sbjct: 119 --------RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLIN--AMRKKKMLNV 168
Query: 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328
+ ++M + +D +IYA ++E P + LL L +
Sbjct: 169 E------------TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKS 216
Query: 329 DDLNLSQQDCTAI--------MKVGIRLQKFG------VVESLFHWFTHSGRDPTVVMYT 374
++ +Q+ + I L+ +G +F +G P +V Y+
Sbjct: 217 KNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYS 276
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
++ + EAL +V +M+ S C Y V++ + N + A+ F +++ +
Sbjct: 277 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 336
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
G ++ +I F + R+ V KE + G
Sbjct: 337 GMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKG 372
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 1/153 (0%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+IM I+ + + SG P V+ YTTLI+ AL + M
Sbjct: 597 NSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRN 656
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
D+ AY +I F DI A FS+L + G P IY +I + +
Sbjct: 657 KGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEA 716
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQ-IEKESRI 490
++ K G D QT L+ + KE R+
Sbjct: 717 ALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRL 749
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL 333
+K N + A K + AK G LD + Y+ +I KN D L LL ++ D
Sbjct: 255 LKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLD-VELACGLLKDM---RDKGW 310
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLF--HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ T +G +++ +VE+L G VV+ TTL+ + K AL
Sbjct: 311 VPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALE 370
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
M + + Y V+I+ ++++A ++++K CPT I +IR F+
Sbjct: 371 FFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFL 430
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 116/296 (39%), Gaps = 44/296 (14%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKG----SLSFT------VRELGHMNLPERALQTFCWAQ 223
I GL +E D +F+ KG L++ ++E G ++ A + C +
Sbjct: 565 INGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKE-GSVSSALTAYREMCESG 623
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGG 277
P++ + + +++ + K+ N + +KG+ A GF K
Sbjct: 624 VSPNVIT----YTTLINGFCKNNNTDLALKMRN--EMRNKGLELDIAAYGALIDGFCKKQ 677
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLI--------LELGKNPDKYMLVMTLLDELGQRD 329
+++ A L DGG + IY LI +E N K ML +
Sbjct: 678 DIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRML----------GE 727
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
++ Q T ++ ++ + + L+ + G P +++YT LI+ + + A
Sbjct: 728 GISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENA 787
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP---TYDI 442
++ ME + ++P Y +I ++ A R +++ + G P TYDI
Sbjct: 788 QKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDI 843
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 6/169 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
+ G ++ A KL + + G+ L S Y L+ L KN ++ M + + + +
Sbjct: 1304 ALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKP 1363
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
++ + + + G K F + +G +P + Y LI+ ++ EA
Sbjct: 1364 NIEVFSILLDGMCRAG----KLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEA 1419
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ ++W ME CL D + V+I+ + N+I AI+ +++ F P
Sbjct: 1420 VKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSP 1468
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 37/257 (14%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE--ATAKGFVKGGNLKLAWKL 285
+ PD + +S ++ L R LK LE F + +G+ T + G + WK
Sbjct: 1116 ILPDVVVYSSLMDGLCRFGRLKEA--LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWK- 1172
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345
+ + + L+++ G +PD + + L+D L +
Sbjct: 1173 -----------EVTWFLNLMVDRGFSPDAFTFTI-LIDGLCKEG---------------- 1204
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G + + H G++P ++ Y TL++ + +A + ++ ++
Sbjct: 1205 ----KVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNV 1260
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+Y ++I + I A R+F +++ G P+ Y +I SGR+ + + E
Sbjct: 1261 FSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVE 1320
Query: 466 AEMAGFKLDKQTVVELL 482
+ G L T LL
Sbjct: 1321 MQTCGQFLKLSTYCVLL 1337
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 339 TAIMKVGI--RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
T VGI R ++FG + L G P VV Y LIHS +A+ V M
Sbjct: 382 TYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEM 441
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ C D Y +I + + A+ + +++ AG P Y +I +G L
Sbjct: 442 QRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHL 501
Query: 457 A 457
A
Sbjct: 502 A 502
>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLL 322
V G K G + A L ++ G+ + P++ YA LI L N ++ +LL
Sbjct: 219 VYSTIMDGLCKDGLVSEALNL--CSEMSGKGVRPNLVTYACLIQGL-CNFGRWKETGSLL 275
Query: 323 DEL---GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
DE+ G R DL A K G +Q +S+ + +G P V Y +LIH
Sbjct: 276 DEMIKMGMRLDLQTLNILVDAFCKEGKVMQ----AKSVIGFMILTGEGPDVFTYNSLIHI 331
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
+ K EA+ V M + CL D+ + +I + +I++ + ++ + GF P
Sbjct: 332 YCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPD 391
Query: 440 YDIYRDMIRIFMASGR 455
+ +I F +GR
Sbjct: 392 VVTWTTLIGGFCQAGR 407
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
F V+ ++F G +PTV+ T LI+ + +A+ +V +ME D+ Y V
Sbjct: 132 FSVLGTMFKL----GLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGV 187
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I D A+ + K++E + P +Y ++ G +++ ++C E G
Sbjct: 188 LINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKG 247
Query: 471 FKLDKQTVVELLQ 483
+ + T L+Q
Sbjct: 248 VRPNLVTYACLIQ 260
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K LF G V YT +I + +A ++ NME + CL D Y
Sbjct: 477 KLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYN 536
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGF 436
V ++ + +I+R+I+Y + +++ GF
Sbjct: 537 VFVQGLLTKKEIARSIKYLTIMRDKGF 563
>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
Length = 356
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+FH G P +V YT+LI + L + E+ MEA C D+ +I +
Sbjct: 225 IFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYA 284
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
++ A +L G CP Y ++ F+ +G + + AGFK +K
Sbjct: 285 KAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSGAGFKDEK 343
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P +V YTTLI +EA+ + M + C D Y +++ ++ ++
Sbjct: 162 AGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVAD 221
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A+ F +L+ G P Y +I + G L + R + E G + D
Sbjct: 222 ALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRAD 272
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YTTLI K A+ M + C +L Y +IK+
Sbjct: 325 GMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 384
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F + + AGF P + ++ +F +G ++ V KE + AG+ ++ T V L I
Sbjct: 385 MAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL--I 442
Query: 485 EKESRIG 491
SR G
Sbjct: 443 SSYSRCG 449
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 6/188 (3%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLN 332
K NL A K + + LD ++ ++ GKN K +++L+ E +N
Sbjct: 552 KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKE----SAIN 607
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
LS ++M + RL E++ SG P Y T+I++ + + +EA +
Sbjct: 608 LSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRL 667
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M+ S D+ Y + +K +V+ + AI + G P Y ++ +
Sbjct: 668 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 727
Query: 453 SGRLAKCR 460
+G+L +
Sbjct: 728 NGKLTDAK 735
>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia seriphioides]
Length = 416
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 9 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 68
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E + +G + + LL + E
Sbjct: 69 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVE 128
Query: 488 SR 489
++
Sbjct: 129 NK 130
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 45 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 102
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L SG P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 103 LISEMKXSGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYG 162
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 163 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 196
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R ++PS +Y+ LI +G++ ++ + + + E G + T + VG
Sbjct: 302 ARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEG------IEMTIVTYSIIVG-GF 354
Query: 349 QKFGVVESLFHWFTHSGRD-PTV--VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G ++ HWF + P++ V Y ++I++ A +V ME +
Sbjct: 355 AKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPI 414
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + + + + F +LKE GF P+ Y +I ++ G+++K + K
Sbjct: 415 DIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKM 474
Query: 466 AEMAGFKLDKQTVVELLQ 483
+M+G K + +T L+
Sbjct: 475 MKMSGIKHNMKTYSMLIN 492
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV Y LI + ++K +A+ ++ M + + Y +++ +
Sbjct: 576 IFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYA 635
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+L D +A +YFS L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 636 SLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTK--EMSAKNIPRN 693
Query: 477 TVVELLQIEKESRIGTI 493
T V + I+ +R G +
Sbjct: 694 TFVYNILIDGWARRGDV 710
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
++L+ + S+F FT G P VV+Y +I + A+ +V M+
Sbjct: 495 LKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTT 554
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I F ++ RA+ F ++ +G PT Y +I + ++AK + +
Sbjct: 555 RTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQ 614
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T L+Q
Sbjct: 615 MNVAGVGPNEHTYTTLMQ 632
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/360 (19%), Positives = 139/360 (38%), Gaps = 29/360 (8%)
Query: 150 ASSRASICKQVYKNPSFLI----------SLARDIKGLDSHKDVAEVLDKCGRFLRKGSL 199
A RA + V NPS + +L + L +A LD L
Sbjct: 54 ARIRAKPKELVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFKNKLSLNDF 113
Query: 200 SFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS 259
+ +E +R+L+ F + Q+Q P++ + + VL R L+ ++ F
Sbjct: 114 ALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEI--FDE 171
Query: 260 LASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKN 311
+ S GV A + + G K + +LL K + PSI Y +I +
Sbjct: 172 MPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKK--ERVSPSILTYNTVINSCARG 229
Query: 312 PDKYMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
+ ++ L ++ G + D+ +A + G+ + E +F G P
Sbjct: 230 GLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDE----AEMVFRTMNEGGILP 285
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
+ Y+ L+ + + + ++ ME+ D+ +Y V+++ I A+ F
Sbjct: 286 DITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVF 345
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+++ AG P Y ++ ++ GR RD+ E +++ + + T L+ + E
Sbjct: 346 RQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEG 405
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 348 LQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G VE +F +G PT+ +TTL+H E K +AL + ME+ D
Sbjct: 790 LSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKID 849
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ Y V+I + +S A+ + ++K G P Y + +GR
Sbjct: 850 VVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIYGTGR 900
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 17/215 (7%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK---NPDKYMLVMTLLDELGQRD 329
+VK G K A +L + G D Y +I +L K + Y+L+ + R
Sbjct: 269 YVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRM------RG 322
Query: 330 DLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D NL+ +CT ++K K + +F+ G P++ YTTLI
Sbjct: 323 D-NLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTID 381
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EAL V++ M+ + Y ++ + A + +++ G P YR+++
Sbjct: 382 EALRVLYEMQVAGVKPSEVTYSAMLN-----GSVHEAFSVYDNMEKYGCSPDVYTYRNLL 436
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
R G L + ++ +D++T+ LL
Sbjct: 437 RGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALL 471
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 10/197 (5%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDD 330
F + G +L V D G ++ Y +I + K+ D M M + G + D
Sbjct: 388 FCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPD 447
Query: 331 LNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
+ CT I+ + E LF H G + Y TLIH+ L ++
Sbjct: 448 I------CTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQD 501
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A+++ +M C D+ +Y +IK ++ R+I S++ E G P Y +I
Sbjct: 502 AISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLIS 561
Query: 449 IFMASGRLAKCRDVCKE 465
+ R+ ++ KE
Sbjct: 562 ELCKTRRVRDALELSKE 578
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
LLD+L R ++ S + ++ R V SL+ H R P TT S
Sbjct: 122 LLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPP----TTFTFSI 177
Query: 381 LSEKKCR-----EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
+ CR EALT++ +M C+ D Y+ VI A ++ A ++ G
Sbjct: 178 AARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMG 237
Query: 436 FCPTYDIYRDMIRIFMASGRL 456
+ + D++ GRL
Sbjct: 238 CSADVNTFNDIVHGLCTLGRL 258
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 104/260 (40%), Gaps = 17/260 (6%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS---LASKGVLEATAK 271
AL F WA+KQ + + +E L + + K+ L N + L +K ++
Sbjct: 140 ALSFFTWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKLLNKDTFALISR 199
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
+ ++ A + ++ G L+ S + +L+ L K+ + D++ +R
Sbjct: 200 RHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRH-VEKANKVFDKMKKR--- 255
Query: 332 NLSQQDCTAIMKVGIRLQKFGV------VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
+ I I L+ +G ++ ++ + G +P VV Y LI + KK
Sbjct: 256 ----RFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKK 311
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
A+ + MEA NC Y +I + +S A+ +F + K GF P Y
Sbjct: 312 YDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNS 371
Query: 446 MIRIFMASGRLAKCRDVCKE 465
++ + S R+ V E
Sbjct: 372 LVGAYCWSMRIDDAFQVIDE 391
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 99/266 (37%), Gaps = 20/266 (7%)
Query: 213 ERALQTFCWAQKQPHLFP---DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEAT 269
E+AL F W+ + D + V +L R + V KL + + L VL+
Sbjct: 165 EKALLLFEWSVLNLGIANEKIDRHAIELMVRILGRESQHTVASKLFDVIPLDDY-VLDVR 223
Query: 270 A-----KGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLL 322
A + + G A ++ + G L PS+ Y ++ GK + ++ LL
Sbjct: 224 AYTTILHAYSRTGKYHRAIEIFERMNESG--LSPSLVTYNVMLDVYGKMGRSWDKILELL 281
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
DE+ R L+ + C+ ++ R F G P V Y L+H
Sbjct: 282 DEMRSRG-LDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGK 340
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
EAL+V+ ME +NC D Y V+ +V + G P
Sbjct: 341 AGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVT 400
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEM 468
Y +I A GR+ D+ K EM
Sbjct: 401 YTTIIN---AYGRVG---DIDKALEM 420
>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
ES+F+ G P+++ YTTL+ + +K+ +++ +E + D + VI
Sbjct: 32 AESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVIN 91
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
F ++ A+ F K++E G PT Y +I+ + +G+
Sbjct: 92 AFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGK 133
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 79/189 (41%), Gaps = 5/189 (2%)
Query: 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLLD 323
A F + GN++ A + ++ G S Y LI G P++ + LL+
Sbjct: 86 FNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEE---SVKLLE 142
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
+ Q ++ + + +++ ++ ++ + SG P VV Y T+ + +
Sbjct: 143 LMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQK 202
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
+A V+ M+ + + +++ + I A+R+ ++KE G P I+
Sbjct: 203 GALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIF 262
Query: 444 RDMIRIFMA 452
+I+ F+A
Sbjct: 263 NSLIKGFVA 271
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SLF G DP + +Y LIH + EA+ ++ ME+ N D+ Y ++I
Sbjct: 359 SLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGL 418
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
++ A R F ++K P+ Y +I F + K D+C E +G
Sbjct: 419 CTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSG 473
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
T SG +P ++ ++TLI + + A+ + + M + D+ Y +I ++
Sbjct: 470 TSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANM 529
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
A+R +S + EAG P + ++ F GRL+ D E A
Sbjct: 530 KEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAA 578
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P V+ YTTL+ K A+ M + C +L Y +IKL
Sbjct: 347 GIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 406
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F +++ AGF P + ++ +F +G + V KE + +G+ ++ T V L I
Sbjct: 407 MIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSL--I 464
Query: 485 EKESRIG 491
SR G
Sbjct: 465 SSYSRCG 471
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 296 LDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
LD ++ +I GKN K +++L+ E +NLS ++M + RL
Sbjct: 595 LDINVLNAMISIYGKNGMVKKVEEILSLMKE----SSINLSTATYNSLMHMYSRLGDCEK 650
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E++ S P Y T+I++ + + +EA + M+ S + D+ Y + +K
Sbjct: 651 CENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVK 710
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK---EAEMAG 470
+VA + AI + G P Y +++ + + GR+A + E
Sbjct: 711 SYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPELHPGI 770
Query: 471 FKLDKQTVVELL 482
K ++Q ++ELL
Sbjct: 771 SKREQQRLLELL 782
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 340 AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+IM G +++KF +LF P VV Y++LI + AL +V M
Sbjct: 369 SIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHD 428
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
++ Y ++ + + +AI +K K+ GF P Y +I+ SG+L
Sbjct: 429 RGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLED 488
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQ 483
R V ++ + G+ LD ++Q
Sbjct: 489 ARKVFEDLLVKGYNLDVYAYTIMIQ 513
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VVMY T+I S K EA + M + D+ Y +I F L + AI
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDL 282
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
F+K+ P + ++ F G++ + + V
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTV 317
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 6/221 (2%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGG--RMLDPSIYAKLILELGKNPDKYMLVMTLL 322
V + KGF + G AWK G ++ +I K +L+ G + L+ L
Sbjct: 336 VYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLE 395
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
++ D + + G + F ++E +SG + V Y+++I+
Sbjct: 396 NDASCSPDKVTFGTLIHGLCENGYANRAFEILEDA----RNSGEELDVFSYSSMINRFCK 451
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ + +A V NM C + Y +I F ++ I+ AI+ + ++ G CPT
Sbjct: 452 DGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIIT 511
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
Y +I + + + + KE GFK D +T L++
Sbjct: 512 YNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIR 552
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 7/185 (3%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNL 333
G++ A L + G D Y+ L+ L K+ D+ + LLDE+ G + D
Sbjct: 172 GDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKH-DQLDNALDLLDEMPNYGVQADAVC 230
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ + G+ + V E L G P + Y ++ + +EA V
Sbjct: 231 YNALLSGCFRTGMFEKAMKVWEQLVR---DPGASPNLATYKVMLDGLCKLGRFKEAGEVW 287
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M A+N D Y ++I D+ A R +S + +AG +Y +I+ F
Sbjct: 288 SRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEV 347
Query: 454 GRLAK 458
GR +
Sbjct: 348 GRTGE 352
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 2/191 (1%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V A GF + + A K+ + G Y LI L K +KY +L E
Sbjct: 476 VYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCK-AEKYQEASSLTKE 534
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ +R + ++++ R +K V ++ +G V+++ LIH S
Sbjct: 535 MLERG-FKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAG 593
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
K EA + M+ NC +L Y ++ F + I +A ++ + + G P Y
Sbjct: 594 KVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYN 653
Query: 445 DMIRIFMASGR 455
I+ + R
Sbjct: 654 TRIKGLCSCNR 664
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 9/208 (4%)
Query: 253 KLENFVSLASKGVLEAT-AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL--- 308
+LEN S + V T G + G A+++L A++ G LD Y+ +I
Sbjct: 393 QLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKD 452
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
G+ D + ++ +D + A++ R+ K ++ T +G P
Sbjct: 453 GRTHDANEVYKNMV-----KDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCP 507
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
T++ Y TLI +K +EA ++ M D+ Y +I+ + A+R +
Sbjct: 508 TIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIW 567
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ +AG ++ +I ++G++
Sbjct: 568 DEILDAGLQVDVMVHNILIHGLCSAGKV 595
>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
Length = 546
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%)
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
++K +R +++ + E L P ++TLI + +A+ + MEA
Sbjct: 31 VLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGG 90
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
DL + +I+L + D S+A FSKLK +G P IY MI ++ + + +
Sbjct: 91 IKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQ 150
Query: 461 DVCKEAEMAGFKLDKQTVVELLQIEKESR 489
+ E + AG D + L+ ES+
Sbjct: 151 GLLAEMKEAGLMPDTVSYTILINAYAESQ 179
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 18/224 (8%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILELGKNP--DKYMLVMTLLDELGQR 328
F+ G L+ + +V K R ++P+ Y+ LI GK D+ + L E G
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D L Q + G+ ++E L + P +V T I +K E
Sbjct: 340 MDEILYQSMIVVYERAGLVAHAKRLLEEL--------KQPDIVPRDTAISILAKAEKLEE 391
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A + W + + + Y+ +I+LF+ AI F ++E+GF P + +
Sbjct: 392 AAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSET---TVV 448
Query: 449 IFMASGRLAKCRDVCK---EAEMAGFKLDKQTVVELLQIEKESR 489
+ A G+L + D K + G L+K+ ++L++ ++R
Sbjct: 449 LLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDAR 492
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 356 SLFHWFTH-SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
++F++ + G +P V+ Y T++ + +A+ +V M+ + Y +I +
Sbjct: 257 NVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISI 316
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ RA F L+E GF +Y+ MI ++ +G +A + + +E
Sbjct: 317 YGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEE 367
>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 667
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 17/209 (8%)
Query: 292 GGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKF 351
GR L L L + PD + + LLD + + S +++ +R +++
Sbjct: 105 NGRQLSMRFMVSL---LSREPD-WQRALALLDWINDKALYRPSLFAYNVLLRNVLRAKQW 160
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
+ LF G P Y+TLI +L + ME N DL Y +
Sbjct: 161 HLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNL 220
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR----------- 460
I L L+D S+AI FS+LK + P Y MI +F + + R
Sbjct: 221 IDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAV 280
Query: 461 --DVCKEAEMAGFKLDKQTVVELLQIEKE 487
D + + +D Q VE L + E
Sbjct: 281 QPDTVSYSTLLAIYVDNQKFVEALSLFSE 309
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P V Y+TL+ + +K EAL++ M + C DL ++I ++ L+ A R
Sbjct: 282 PDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRL 341
Query: 428 FSKLKEAGFCPTYDIYRDMIRIF 450
F +++ G P Y ++R++
Sbjct: 342 FWSMRKMGIQPNVISYNTLLRVY 364
>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
Length = 546
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%)
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
++K +R +++ + E L P ++TLI + +A+ + MEA
Sbjct: 31 VLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGG 90
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
DL + +I+L + D S+A FSKLK +G P IY MI ++ + + +
Sbjct: 91 IKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQ 150
Query: 461 DVCKEAEMAGFKLDKQTVVELLQIEKESR 489
+ E + AG D + L+ ES+
Sbjct: 151 GLLAEMKEAGLMPDTVSYTILINAYAESQ 179
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 18/224 (8%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILELGKNP--DKYMLVMTLLDELGQR 328
F+ G L+ + +V K R ++P+ Y+ LI GK D+ + L E G
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D L Q + G+ ++E L + P +V T I +K E
Sbjct: 340 MDEILYQSMIVVYERAGLVAHAKRLLEEL--------KQPDIVPRDTAISILAKAEKLEE 391
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A + W + + + Y+ +I+LFV AI F ++E+GF P + +
Sbjct: 392 AAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSET---TVV 448
Query: 449 IFMASGRLAKCRDVCK---EAEMAGFKLDKQTVVELLQIEKESR 489
+ A G+L + D K + G L+K+ ++L++ ++R
Sbjct: 449 LLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDAR 492
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P V +YTT+I+ E EAL NME C D +Y V+I+ F+
Sbjct: 156 LFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFL 215
Query: 417 ALNDISRAIRYFSKLKEAGF 436
D SRA+ ++++ GF
Sbjct: 216 QHKDESRAVHLIGEMRDRGF 235
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
+ L++ G P V Y TLIH + REA + NM + L DL AY +++
Sbjct: 48 AKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLD 107
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ +A R F ++ + P +Y ++ SG L R++ E + G +
Sbjct: 108 GLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQP 167
Query: 474 DKQTVVELLQ 483
+ Q ++
Sbjct: 168 NVQIYTTIIN 177
>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
Length = 1051
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV Y LI+ E + EA V+ M+ C + YR+++ F + D ++
Sbjct: 656 PDVVTYNILINXLCKEGRAXEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKV 715
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
S + G CP + + D++ + +G++ V +E E
Sbjct: 716 LSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEME 755
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+VV YT+L+ + EK + ++ M C ++ Y +++ A
Sbjct: 1620 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 1679
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ F KLKE G P Y +I I +GRL V +E G + T L+
Sbjct: 1680 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLI 1737
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 131/318 (41%), Gaps = 31/318 (9%)
Query: 174 IKGLDSHKDVAEVLDKCGRFLRKGS-------LSFTVRELGHMNLPERALQTFCWAQKQP 226
I+ LD H+ EV K + + KGS LS VR LG + RAL F + K
Sbjct: 125 IRCLDEHRMFGEVW-KTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVF-YQVKGR 182
Query: 227 HLFPDDRLLASTVEVLAR--HHELKVPFKLENFVS----LASKGVLEATAKGFVKGGNLK 280
P S + +L + HHE KV S A F K
Sbjct: 183 KCRPTASTYNSIILMLMQEGHHE-KVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDD 241
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
A +L K+ G IY L+ ++GK + + L+ E+ R L L+
Sbjct: 242 SAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEE----ALGLVKEMRARRCL-LTVFT 296
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVW 394
T +++ L K G VE + + + +D P VV+ LI+ R+A+ +
Sbjct: 297 YTELIR---GLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFD 353
Query: 395 NMEASNCLFDLPAYRVVIK-LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M+ NC ++ Y +IK LF A +S A +F ++K+ G P+ Y +I + +
Sbjct: 354 EMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKT 413
Query: 454 GRLAKCRDVCKEAEMAGF 471
R+ K + +E + GF
Sbjct: 414 NRVEKALLLLEEMDEKGF 431
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIK 413
S+F+ PT Y ++I + E E + ++N S +C D Y +I
Sbjct: 174 SVFYQVKGRKCRPTASTYNSIILMLMQEGH-HEKVHELYNEMCSEVHCFPDTVTYSALIS 232
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
F LN AIR F ++KE G PT IY ++ I+ G++ + + KE L
Sbjct: 233 AFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLL 292
Query: 474 DKQTVVELLQ-IEKESRI 490
T EL++ + K R+
Sbjct: 293 TVFTYTELIRGLGKSGRV 310
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 8/253 (3%)
Query: 216 LQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVK 275
+Q F WA K+ + D + + L H +K + S + A V+
Sbjct: 102 IQFFKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVR 161
Query: 276 G-GNLKLAWKLLMV-AKDGGRMLDP--SIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K+ + L V + GR P S Y +IL L + + V L +E+
Sbjct: 162 ILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQE-GHHEKVHELYNEMCSEVHC 220
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+A++ +L + LF +G PT +YTTL+ K EAL
Sbjct: 221 FPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALG 280
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+V M A CL + Y +I+ + A + + + G P + ++I I
Sbjct: 281 LVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINIL- 339
Query: 452 ASGRLAKCRDVCK 464
GR RD K
Sbjct: 340 --GRSNHLRDAIK 350
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +PT+V Y T++ + +EA M+ C D+ +Y VI F ++ +A
Sbjct: 235 GIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKA 294
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIF 450
R F ++ + G P Y +I++F
Sbjct: 295 KRVFDEMVKEGVAPNVATYNALIQVF 320
>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1385
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PTV +TTL+H+ E +AL + ME + D+ AY V+I A DI A +
Sbjct: 932 PTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKL 991
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ ++++ P IY +I F+ +G
Sbjct: 992 YEEMEQRDIWPNTSIYIVLIDSFLCTG 1018
>gi|225450399|ref|XP_002278276.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38150-like [Vitis vinifera]
Length = 307
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P VV +T +I + + + +EA+ V M S + + Y V+IK
Sbjct: 164 LFAQIKDHGHMPDVVAHTAVIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLA 223
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ A +Y ++ G P Y + F ++ + R+ ++ + GF D++
Sbjct: 224 GDAKLGEAKKYVLEMMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEK 283
Query: 477 TVVELLQ 483
V E+L+
Sbjct: 284 AVREILK 290
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++++ + LF+ H G P V Y TLIH REA + NM + L +L
Sbjct: 390 KVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLF 449
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +++ F +A R F ++ P +Y +I SG L R + E
Sbjct: 450 TYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSEL 509
Query: 467 EMAGFKLDKQTVVELLQ 483
+ G + + Q ++
Sbjct: 510 FVKGLQPNAQIYTTIIN 526
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P +YTT+I+ E EAL NME C D +Y V+I+ F+
Sbjct: 505 LFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFL 564
Query: 417 ALNDISRAIRYFSKLKEAGF 436
D SRA++ ++++ GF
Sbjct: 565 HHKDESRAVQLIGEMRDKGF 584
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%)
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
LQ+ + S+ G PT+V +TTLI+ K +A+ + +M A C D+
Sbjct: 146 LQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYT 205
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y +I + + + A K++EAG P Y +I R+ + D+ +
Sbjct: 206 YTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMK 265
Query: 468 MAGFKLDKQTVVELLQ 483
+ G D T L+Q
Sbjct: 266 VKGISPDIFTYNSLIQ 281
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 10/192 (5%)
Query: 296 LDPSI--YAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIRLQK 350
L P+I + LI L K K+ M L D++ G R D+ + K+G
Sbjct: 164 LQPTIVTFTTLINWLCK-VGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAA 222
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
G+++ + +G P VV Y+T+I S +++ EAL + M+ D+ Y
Sbjct: 223 AGLLKKM----EEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNS 278
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I+ + A ++++ P + ++ G++++ + V K G
Sbjct: 279 LIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMG 338
Query: 471 FKLDKQTVVELL 482
+ D T L+
Sbjct: 339 VEPDVVTYSSLM 350
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+VV YT+L+ + EK + ++ M C ++ Y +++ A
Sbjct: 1579 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 1638
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ F KLKE G P Y +I I +GRL V +E G + T L+
Sbjct: 1639 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLI 1696
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YT L+ + EA V M++S C +L Y +I F + +
Sbjct: 390 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 449
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
++ F ++ AG P + +Y + SGR A+ ++ +E
Sbjct: 450 LKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREG 491
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 18/214 (8%)
Query: 254 LENFVSLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
LE F S+ SKG K G L A++LL D G + D Y+ LI
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISG 299
Query: 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI--RLQKFGVVES---LFHWFT 362
L + + D +D+ Q T + + + L K G ++ +
Sbjct: 300 LCS-------IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 352
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
SG+ P VV Y TL+H + A ++ +M A ++ Y ++ N +
Sbjct: 353 SSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLP 412
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
A F+++K +G P Y +I F ++G++
Sbjct: 413 EACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV 446
>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 426
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R + A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFSPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P V Y+TL+ + KK EALTV M CL DL ++I ++
Sbjct: 101 LISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
inaguensis]
Length = 433
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E A + + ME DL Y +I+L L D S+AI
Sbjct: 10 PDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLCDYSKAISI 69
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E + AG + + LL + E
Sbjct: 70 FSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 129
Query: 488 SR 489
++
Sbjct: 130 NK 131
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 86 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMRE 145
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P+ Y ++R++
Sbjct: 146 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNTLLRVY 197
>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 989
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF SG V + T+IH+ + EA +++ ME D Y +++ L
Sbjct: 323 NLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLH 382
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
DI A++Y+ +++ G P +R ++ I +A+ V E + ++D+
Sbjct: 383 ADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSIRIDE 442
Query: 476 QTVVELLQI 484
+V ++Q+
Sbjct: 443 HSVPVIMQM 451
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ ++ G + LF+ H G P +V Y TLI + REA + NM + L DL
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 473
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +++ F +++A R F ++ P +Y +I S L + R + E
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 533
Query: 467 EMAGFKLDKQTVVELLQ 483
+ G + + Q ++
Sbjct: 534 FVQGLQPNVQIYTTIIN 550
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P V +YTT+I+ E EAL NME C + +Y V+I+ F+
Sbjct: 529 LFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFL 588
Query: 417 ALNDISRAIRYFSKLKEAGF 436
D SRA++ +++E GF
Sbjct: 589 QHKDESRAVQLIGEMREKGF 608
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 16/155 (10%)
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ---------------KFGV 353
G +PD Y L M L++ Q ++L I+K+G++L KFG
Sbjct: 152 GLSPDTYTLHM-LINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQ 210
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
LF G P V YTT+I+ + A + M + C D+ Y +I
Sbjct: 211 AVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIID 270
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
++ A+ FS +K G P Y +I+
Sbjct: 271 SLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ 305
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 7/173 (4%)
Query: 314 KYMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
K+ + L D++ G + D++ + K+G + G LF +G P V
Sbjct: 207 KFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAG----LFRKMGEAGCQPDV 262
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V Y+T+I S +++ EAL + M+A ++ Y +I+ + A ++
Sbjct: 263 VTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNE 322
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ P + +I IF G + + R V K G + + T L+
Sbjct: 323 MMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMN 375
>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
trifolia]
Length = 440
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
LF P Y+TLI E AL+ + ME DL Y +I+L
Sbjct: 1 GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
D S+AI FS+LK +GF P Y MI +F + + R + E + AG +
Sbjct: 61 RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNT 120
Query: 476 QTVVELLQIEKESR 489
+ LL + E++
Sbjct: 121 ASYSTLLTMYVENK 134
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 49 DLVLYSNLI-ELSRKXCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 106
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 107 LIGEMKXAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 166
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 167 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 200
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%)
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
++ V + K ++ES+++ T G P VV TLI + + R A+ ++ M +
Sbjct: 168 LLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHG 227
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
D + +++ F+ I A+R +K+ EAG PT +I + GR+
Sbjct: 228 VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDAL 287
Query: 461 DVCKEAEMAGFKLDKQT 477
++ GF+ D+ T
Sbjct: 288 GYIQQEIADGFEPDQVT 304
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 106/284 (37%), Gaps = 49/284 (17%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD L + ++ L R H+++ + ++S GV +GF++ G+++ A
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLM--LEEMSSHGVAPDETTFTTLMQGFIEEGSIEAAL 252
Query: 284 KL---------------LMVAKDG----GRMLDPSIYAKLILELGKNPDKY--------- 315
++ + V +G GR+ D Y + + G PD+
Sbjct: 253 RVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGL 312
Query: 316 ---------MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR 366
+ VM L+ + G D+ + K G + G+V + G
Sbjct: 313 CQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM----VDRGC 368
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
P + TLI + S+ + EAL + + D+ + ++I + D IR
Sbjct: 369 LPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 428
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
F ++K +G P Y +I + G+L D+ E E G
Sbjct: 429 LFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YT L+ + EA V M++S C +L Y +I F + +
Sbjct: 390 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 449
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
++ F ++ AG P + +Y + SGR A+ ++ +E
Sbjct: 450 LKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREG 491
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG+ P VV Y TL+H + A ++ +M A ++ Y ++ N +
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
A F+++K +G P Y +I F ++G++
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV 446
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 38/100 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF HSG P+ V YT+LIH +A + +M C Y V+I
Sbjct: 32 LFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASC 91
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ A K+ E G P Y ++ SGR+
Sbjct: 92 KRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRV 131
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 16/281 (5%)
Query: 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV-SLASKGV 265
GH+ R L + L P+D + ++ L + +++ + + F+ SL KGV
Sbjct: 296 GHLQCAFRLLHLM----ETNGLVPNDWTFSVLIDALCKREKVE---EAQLFLGSLVKKGV 348
Query: 266 ------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
+ G K G + A +L+ G + D Y+ LI L + K +
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQ--KKLSQA 406
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
TL+ E + S T I+ +R + +F +G +P +V YT + S
Sbjct: 407 TLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRS 466
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
E + +A +++ M +L Y +I+ + L +S+A F + G+ P
Sbjct: 467 YCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPN 526
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
D Y ++R+ + D+ K A+M ++ + + E
Sbjct: 527 EDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITE 567
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 98/262 (37%), Gaps = 20/262 (7%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLAS--------TVEVLARHHELK--VPFKLENFVSLA 261
P R L T A + +FPD LAS T L + L +P ++ SL
Sbjct: 40 PLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLL 99
Query: 262 SKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
G+ + G+ + G L A ++ ++ G + Y L+ L
Sbjct: 100 HAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGL-LGAGMV 158
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYT 374
MT+ +G R D A M G+ + E L +G +P +V+Y
Sbjct: 159 REAMTVF--VGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYN 216
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
LI + + AL V M+ + C ++ Y +I + RA+ FS++ EA
Sbjct: 217 ALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEA 276
Query: 435 GFCPTYDIYRDMIRIFMASGRL 456
G P Y +I+ G L
Sbjct: 277 GLEPNVVTYTALIQGQCNEGHL 298
>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
Length = 466
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 126/305 (41%), Gaps = 25/305 (8%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE-LKVPFKLENF 257
++ ++ LPE+ L TF + + + P + L ++VL H L+ F+L F
Sbjct: 122 FTYLIKVYAEAKLPEKVLSTF-YKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFEL--F 178
Query: 258 VSLASKGVLEAT------AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY-----AKLIL 306
S GV+ T + F +L +A++L G+ML+ + K+++
Sbjct: 179 KSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF------GKMLERDVVPDVDSYKILI 232
Query: 307 ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR 366
+ + M LLD++ + + + T ++ R + L G
Sbjct: 233 QGFCRKGQVNGAMELLDDMLNKGFVP-DRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGC 291
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P +V Y T+I E + +A V+ +M ++ C + +YR +I +
Sbjct: 292 NPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKK 351
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT---VVELLQ 483
Y ++ GF P + + +++ F + G++ + DV + G L T V+ L+
Sbjct: 352 YLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLIC 411
Query: 484 IEKES 488
E ES
Sbjct: 412 NEDES 416
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 214 RALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LE 267
+ALQ F + Q+ + + + +L R E K+ E F ++ GV
Sbjct: 12 QALQVFRFLQEHLEYELKEHNCVTIISILGR--EGKLGLAREIFEGMSKAGVAPSVHAYT 69
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A G+ K G LK AW L K+ G + Y LI K + ++ L +E+ Q
Sbjct: 70 ALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQ 129
Query: 328 R----DDLN-----------------------LSQQDC--------TAIMKVGIRLQKFG 352
+D+ + +C T I +G R +
Sbjct: 130 AGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLG-RSGRLD 188
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
LF GR P Y +L+ + E + +A+ + ME C+ DL Y VI
Sbjct: 189 EAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVI 248
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ + A F +++ G P Y M+ + R + RD+ K + AG
Sbjct: 249 DMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCT 308
Query: 473 LDKQTVVELL 482
D T LL
Sbjct: 309 PDLWTYNILL 318
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN--MEASNCLFDLPAYRVVIK 413
S+F+ P Y ++I L ++ E + ++N NC D Y +I
Sbjct: 184 SVFYQIKGRKCKPAATTYNSMIL-MLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALIS 242
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
F L AIR F ++KE G PT IY ++ I+ ++ K DV KE + G L
Sbjct: 243 AFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTL 302
Query: 474 DKQTVVELLQ 483
T E ++
Sbjct: 303 TVFTYTEWIK 312
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 4/213 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L EL +++
Sbjct: 419 GFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGK-VKRYEAANELFLEL--KENC 475
Query: 332 NLSQQDCTAIM-KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
S A+M K + + LF+ G P V Y L+ + EA
Sbjct: 476 GHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQ 535
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+++ M+ + C DL ++ +++ RAI F+K+K + P Y ++
Sbjct: 536 SLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCL 595
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G + + +E + GF+ + T +L+
Sbjct: 596 SHAGLFEEAAKLMREMNLKGFEYNNITYTSILE 628
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 348 LQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G V+ + F G P VV+ +LI+ + L + ME+ C +
Sbjct: 314 LGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPN 373
Query: 405 LPAYRVVIK-LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
+ Y VIK LF S A +F K+K G P+ Y +I F + R+ K +
Sbjct: 374 VVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLL 433
Query: 464 KEAEMAGF 471
+E + GF
Sbjct: 434 EEMDEKGF 441
>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M V I + +++F +G P+++ YTTL+ + +K+ ++V +E
Sbjct: 43 TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSEVEQ 102
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
S D + VI F ++ A++ K+KE G PT Y +I+ + +G+
Sbjct: 103 SGTKPDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 159
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 33/330 (10%)
Query: 126 PLPLPLPHRLRPLEL-PTPKKRVCLASSRASICKQVYKNPSFL----ISLARDIKGLDSH 180
P L HR+R L + P+PK +A AS K FL +D+ ++
Sbjct: 108 PTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTI 167
Query: 181 KDV---AEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAS 237
DV ++ ++K R F+V + + + L +C ++ P
Sbjct: 168 LDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVI----LNGWCLIKRTP----------K 213
Query: 238 TVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD 297
+EVL E + L + ++ KGF + G ++ AW+ + K +D
Sbjct: 214 ALEVLKEMVERGINPNLTTYNTML---------KGFFRAGQIRHAWEFFLEMKKRDCEID 264
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
Y ++ G + + DE+ R+ + S A+++V + +
Sbjct: 265 VVTYTTVVHGFGV-AGEIKRARNVFDEM-IREGVLPSVATYNAMIQVLCKKDNVENAVVM 322
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G +P V Y LI + ++ ME C + Y ++I+ +
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+++ +A+ F K+ P D Y +I
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILI 412
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
VV YTT++H + + A V M L + Y +I++ +++ A+ F
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 324
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
++ G+ P Y +IR +G ++ ++ + E G + + QT +++ E
Sbjct: 325 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 8/206 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQR 328
G K G + A++L D G +P IY LI G+ D + + ++ G R
Sbjct: 464 GLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRR-GGR 522
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
DL L + K G ++K ++F G P V Y+ LIH + RE
Sbjct: 523 PDLTLLNTYMDCVFKAG-EVEKG---RAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARE 578
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ M D AY V+ + +A ++K PT Y ++
Sbjct: 579 TSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVD 638
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLD 474
RL + + +EA+ G +L+
Sbjct: 639 GLAKIDRLDEAYMLFEEAKSKGIELN 664
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G + +V ++TTL+ + E + AL +V ++ S D+ Y V I F + A
Sbjct: 206 GYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMA 265
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
++F +LK G P Y M+ + +GRL + ++ + E
Sbjct: 266 WKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQME 308
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G++ +AWK K G D Y ++ L K + L ++ D+
Sbjct: 256 FGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCK-AGRLGEAEELFGQMEAERDVP 314
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
+ T IM G ++F L G P+VV + +++ ++K EALT
Sbjct: 315 CAYAYNTMIMGYG-SAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALT- 372
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
++++ + ++ Y ++I + ++ A + +++ AG P
Sbjct: 373 LFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPN 419
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 256 NFVSLASKGVLEATAKGFV--------------KGGNLKLAWKLLMVAKDGGRMLDPSIY 301
+ + LA K E A G V G + A+ ++ G + D S Y
Sbjct: 427 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 486
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361
+K +L N K L L +E+ +R L T ++ K G++E WF
Sbjct: 487 SK-VLNYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMVD---SFCKAGLIEQARKWF 541
Query: 362 TH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
G P VV YT LIH+ L KK A + M + CL ++ Y +I
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIY 443
+ +A + F ++ + P D+Y
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMY 626
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV+YT +I K EA ++ ME C ++ Y +I F + I +
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
++ G P Y YR +I +G L ++ +E
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 839
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV YT L+ + EA V M++S C +L Y +I F + +
Sbjct: 607 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 666
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
++ F ++ AG P + +Y + SGR A+ ++ +E
Sbjct: 667 LKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREG 708
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ SG+ P VV Y TL+H + A ++ +M A ++ Y ++
Sbjct: 564 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 623
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
N + A F+++K +G P Y +I F ++G++
Sbjct: 624 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV 663
>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
Length = 1093
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV Y LI+ E + EA V+ M+ C + YR+++ F + D ++
Sbjct: 727 PDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKV 786
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
S + G CP + + D++ + +G++ V +E E
Sbjct: 787 LSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEME 826
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
V Y T + + L + AL V M+ ++ Y ++I LF L D+ RA++ F
Sbjct: 649 TVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILISLFSKLGDLGRAVQAFE 708
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
L + Y MI + +GR + D+ +E E GFK
Sbjct: 709 VLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFK 751
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V+Y +IH E + +A+ +M A+ L D Y +I L +
Sbjct: 209 EPNFVLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEA 268
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ +K+ G P+ Y MI ++ +GR A + E + +G D+ ++ +
Sbjct: 269 LYLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINM 326
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 33/330 (10%)
Query: 126 PLPLPLPHRLRPLEL-PTPKKRVCLASSRASICKQVYKNPSFL----ISLARDIKGLDSH 180
P L HR+R L + P+PK +A AS K FL +D+ ++
Sbjct: 108 PTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTI 167
Query: 181 KDV---AEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAS 237
DV ++ ++K R F+V + + + L +C ++ P
Sbjct: 168 LDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVI----LNGWCLIKRTP----------K 213
Query: 238 TVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD 297
+EVL E + L + ++ KGF + G ++ AW+ + K +D
Sbjct: 214 ALEVLKEMVERGINPNLTTYNTML---------KGFFRAGQIRHAWEFFLEMKKRDCEID 264
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
Y ++ G + + DE+ R+ + S A+++V + +
Sbjct: 265 VVTYTTVVHGFGV-AGEIKRARNVFDEM-IREGVLPSVATYNAMIQVLCKKDNVENAVVM 322
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G +P V Y LI + ++ ME C + Y ++I+ +
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+++ +A+ F K+ P D Y +I
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILI 412
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
VV YTT++H + + A V M L + Y +I++ +++ A+ F
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 324
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
++ G+ P Y +IR +G ++ ++ + E G + + QT +++ E
Sbjct: 325 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62470, mitochondrial-like [Glycine max]
Length = 510
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 130/321 (40%), Gaps = 28/321 (8%)
Query: 176 GLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLL 235
LD + +V VLD+CG L + ++ H P A + FC A K+P D R
Sbjct: 48 ALDRNMEV--VLDECGVRLSHDLVVDVLQRFKHARKP--AFRFFCXAGKRPGFAHDSRTY 103
Query: 236 ASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM 295
+ VL R + F ++ +K + E KG + +A K AK R
Sbjct: 104 NFMMCVLGRTRQ---------FETMVAK-LEEMGEKGLLTMETFSIAIKAFAEAKQ--RK 151
Query: 296 LDPSIY---AKLILELGKNPDKYMLVMTLLDELGQ---------RDDLNLSQQDCTAIMK 343
+ I+ K ++G + ++L +LG+ +D S Q T ++
Sbjct: 152 KEVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLS 211
Query: 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
RL+ +++ G +P +V + ++ L KK +A+ + M+A
Sbjct: 212 GWCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSP 271
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
++ +Y ++I+ F + AI YF + + G P +Y +I F ++ +
Sbjct: 272 NVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLL 331
Query: 464 KEAEMAGFKLDKQTVVELLQI 484
KE G D +T L+++
Sbjct: 332 KEMRERGCPPDGRTYNALIKL 352
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 29/278 (10%)
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLAS 262
++ LG + +ALQ F WAQ+ + + S +E+L R+ L + S
Sbjct: 83 LQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYF-SMLEILGRNRHLNTARNFLFSIEKRS 141
Query: 263 KGVLEATA-------KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA-----KLILELGK 310
+G+++ A + F + G + + K+ + K G + PS+ ++L+ G+
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHG--VSPSVVTFNSLLTILLKRGR 199
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR-LQKFGVVESLFHWF---THSGR 366
+ +L G D T + IR G+V+ F F + G
Sbjct: 200 TNMAKKVYDEMLSTYGVTPD--------TFTFNILIRGFCMNGMVDDGFRIFNDLSRFGC 251
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF--DLPAYRVVIKLFVALNDISRA 424
+P VV Y TL+ K A VV M + ++ Y +I+ + A +I +A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+ F ++ G Y +I+ + + K +D+
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDI 349
>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Glycine max]
Length = 449
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%)
Query: 272 GFV-KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-----LELGKNPDKYMLVMTLLDEL 325
GF+ + G+L A LL G+ + YA L+ +E + K M M
Sbjct: 218 GFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCK 277
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLS 382
Q + + D L K G VE SL H P VV Y LI+
Sbjct: 278 AQPVNFGVLMND----------LGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCK 327
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
E K EA V+ M+ C+ + YR+V+ + D A+ + + + CP +
Sbjct: 328 EGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSET 387
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ M+ + SG + V +E E + D ++
Sbjct: 388 FNCMVVGLLKSGNIDGSCFVLEEMEKRKLEFDLES 422
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 256 NFVSLASKGVLEATAKGFV--------------KGGNLKLAWKLLMVAKDGGRMLDPSIY 301
+ + LA K E A G V G + A+ ++ G + D S Y
Sbjct: 427 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 486
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361
+K +L N K L L +E+ +R L T ++ K G++E WF
Sbjct: 487 SK-VLNYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMVD---SFCKAGLIEQARKWF 541
Query: 362 TH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
G P VV YT LIH+ L KK A + M + CL ++ Y +I
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIY 443
+ +A + F ++ + P D+Y
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMY 626
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV+YT +I K EA ++ ME C ++ Y +I F + I +
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
++ G P Y YR +I +G L ++ +E
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 839
>gi|449479638|ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
DK +L +++ G DL TA+ + G +F ES++ + P +V
Sbjct: 197 DKAILFFNHMEKNGMEPDLVTFNTLLTALYRKG----QFLDGESMWARMENKNIAPDLVS 252
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y + + +K+ ++ + ++ ME D+ Y +I F D+ A +++ KLK
Sbjct: 253 YNARLRGMVLDKRIQDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGDLEEAKKWYYKLK 312
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
E+ P YR ++ + G +CKEA
Sbjct: 313 ESEVDPNATTYRTLLPLLCEKGDFDSGLQLCKEA 346
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
G + +F G PTVV Y TL+ LS K ++A+ + + M ++ Y ++
Sbjct: 292 GEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEIL 351
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
I + + A + S +++ GF P+ I+ ++ +GRL ++ KE
Sbjct: 352 ISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE 405
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 16/251 (6%)
Query: 217 QTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATA 270
++F ++ +FPD + + R L+ F+L + S++ KG+ A
Sbjct: 117 KSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD--SMSGKGLKPCVFTYNAII 174
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
G K G A +L G D + Y L++E +N D M + DE+ +
Sbjct: 175 NGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN-DNMMDAERIFDEMPSQGV 233
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKKCR 387
+ D + + L K G ++ +F ++G P V+YT LI
Sbjct: 234 V----PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 289
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EAL V M C+ D+ Y ++ +S A F+++ E G P + + +I
Sbjct: 290 EALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 349
Query: 448 RIFMASGRLAK 458
+ G + K
Sbjct: 350 NGYSKDGNMNK 360
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 29/278 (10%)
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLAS 262
++ LG + +ALQ F WAQ+ + + S +E+L R+ L + S
Sbjct: 83 LQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYF-SMLEILGRNRHLNTARNFLFSIEKRS 141
Query: 263 KGVLEATA-------KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA-----KLILELGK 310
+G+++ A + F + G + + K+ + K G + PS+ ++L+ G+
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHG--VSPSVVTFNSLLTILLKRGR 199
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR-LQKFGVVESLFHWF---THSGR 366
+ +L G D T + IR G+V+ F F + G
Sbjct: 200 TNMAKKVYDEMLSTYGVTPD--------TFTFNILIRGFCMNGMVDDGFRIFNDLSRFGC 251
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF--DLPAYRVVIKLFVALNDISRA 424
+P VV Y TL+ K A VV M + ++ Y +I+ + A +I +A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+ F ++ G Y +I+ + + K +D+
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDI 349
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 120/308 (38%), Gaps = 37/308 (12%)
Query: 177 LDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLA 236
LD H+ V E +D L L + V+ + + + +RAL+ + P+ R+LA
Sbjct: 26 LDEHEFVRETVDGWKEQLAPTDLCYVVKRVANTSW-QRALELYECLNVARWYAPNPRMLA 84
Query: 237 STVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML 296
+ VL R ++ P + A + GN + LM
Sbjct: 85 VMLSVLGRANQ---PGLAQELFDRAESSI-----------GNCVQVYNSLM--------- 121
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
S+YA+ + + ++ + + G R DL A + G+ + G+ S
Sbjct: 122 --SVYAR-----HGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGM---QEGLASS 171
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P + Y TLI + + +A+ + M+ C D+ Y +I ++
Sbjct: 172 LLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYG 231
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL---AKCRDVCKEAEMAGFKL 473
+ A F ++E GF P Y ++ F GR+ + R + ++A + ++
Sbjct: 232 RAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEI 291
Query: 474 DKQTVVEL 481
T++ +
Sbjct: 292 TYNTMIHM 299
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 5/190 (2%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V++A +G ++ G LA LL G D Y LI N ++ + + +E
Sbjct: 155 VIKARTRGGMQEG---LASSLLQDVYAAGLRPDTITYNTLISACSLN-NRLSDAILIFEE 210
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ QR + A++ V R + S+F G P V Y +++H+ +
Sbjct: 211 M-QRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDG 269
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ E + M + C D Y +I ++ +A + ++KE G CP +
Sbjct: 270 RIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFT 329
Query: 445 DMIRIFMASG 454
+I +G
Sbjct: 330 VLIDTLGKAG 339
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 6/175 (3%)
Query: 290 KDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347
K G LD IY +I K + K LV + E+G D T IM R
Sbjct: 802 KKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFN---TLIMLYS-R 857
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
Q ++L +G P + YTTLI + + +A V ++ + C D A
Sbjct: 858 NQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATA 917
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
Y V+I ++ + + ++K GF P+ ++ + G K +V
Sbjct: 918 YNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEV 972
>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 426
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D +AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYXKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL++ M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 90/198 (45%), Gaps = 14/198 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R ++PS +Y+ LI +G++ ++ + + + E G + T + VG
Sbjct: 312 ARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEG------IEMTIVTYSIIVG-GF 364
Query: 349 QKFGVVESLFHWFTHSGRD-PTV--VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G ++ HWF + P++ V+Y +I++ A +V ME +
Sbjct: 365 AKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPI 424
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + + + + F +LKE GF P+ Y +I ++ G+++K ++ K
Sbjct: 425 DIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKM 484
Query: 466 AEMAGFKLDKQTVVELLQ 483
+M+G K + +T L+
Sbjct: 485 MKMSGIKHNMKTYSMLIN 502
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
++L+ + S+F FT G P VV+Y +I + A+ +V M+
Sbjct: 505 LKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTT 564
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I F ++ RA+ F ++ +G PT Y +I + ++ K + E
Sbjct: 565 RTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDE 624
Query: 466 AEMAGFKLDKQTVVELLQ 483
+AG ++ T L+Q
Sbjct: 625 MNVAGVGPNEHTYTTLMQ 642
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV Y LI + +++ +A+ ++ M + + Y +++ +
Sbjct: 586 IFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYA 645
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+L D +A +YF+ L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 646 SLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTK--EMSAKNIPRN 703
Query: 477 TVVELLQIEKESRIGTI 493
T V + I+ +R G +
Sbjct: 704 TFVYNILIDGWARRGDV 720
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 92/210 (43%), Gaps = 17/210 (8%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+G+ G+ + A++ V ++ G +D Y L+ K+ + + + E+ +
Sbjct: 642 QGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKS-GRMQSALAVTKEMSAK-- 698
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVES--LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
N+ + + + ++ V E+ L G P + YT+ I++ ++
Sbjct: 699 -NIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQK 757
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI- 447
A ++ MEAS +L Y +I + + +A+ F ++K AGF P +Y ++
Sbjct: 758 ATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVT 817
Query: 448 ---------RIFMASGRLAKCRDVCKEAEM 468
+ ++ SG L+ CR++ E+EM
Sbjct: 818 SLLSRATFAQSYVYSGLLSVCREMI-ESEM 846
>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
Length = 356
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+FH G P +V YT+LI + L + E+ MEA C D+ +I +
Sbjct: 225 IFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYA 284
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
++ A +L G CP Y ++ F+ +G + + AGFK +K
Sbjct: 285 KAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASMSEAGFKDEK 343
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P +V YTTLI +EA+ + M + C D Y +++ ++ ++
Sbjct: 162 AGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVAD 221
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A+ F +L+ G P Y +I + G L + R + E G + D
Sbjct: 222 ALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRAD 272
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 256 NFVSLASKGVLEATAKGFV--------------KGGNLKLAWKLLMVAKDGGRMLDPSIY 301
+ + LA K E A G V G + A+ ++ G + D S Y
Sbjct: 386 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 445
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361
+K +L N K L L +E+ +R L T ++ K G++E WF
Sbjct: 446 SK-VLNYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMVD---SFCKAGLIEQARKWF 500
Query: 362 TH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
G P VV YT LIH+ L KK A + M + CL ++ Y +I
Sbjct: 501 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 560
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIY 443
+ +A + F ++ + P D+Y
Sbjct: 561 GQVEKACQIFERMCGSKDVPDVDMY 585
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV+YT +I K EA ++ ME C ++ Y +I F + I +
Sbjct: 701 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 760
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
++ G P Y YR +I +G L ++ +E
Sbjct: 761 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 798
>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
Length = 1090
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV +TTL+HS E K +AL + ME D+ +Y V+I
Sbjct: 912 VFSNMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLKVDVVSYNVLITGLC 971
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
IS A+ + ++K G P Y + ++GR+ ++ ++ E G
Sbjct: 972 KDKHISDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLEDIEERGL 1026
>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 550
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
Query: 338 CTAIMKV-GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
CT ++ V RLQ+F + W T +G P VV Y+TLI ++ EAL V+ M
Sbjct: 137 CTVLVGVYACRLQQFDAAYEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLM 196
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C + Y ++ + I A + + AG P+ Y +I G
Sbjct: 197 LEEGCHPNAHTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAF 256
Query: 457 AKCRDVCKEAEMAGFKLDKQT 477
+ + +E+ G+ D T
Sbjct: 257 EEVDVLLEESTSKGWIPDTIT 277
>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
Length = 731
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAY 408
KF +F +G + T V + +IH + REA +V M + +C D+ Y
Sbjct: 244 KFAEASKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTKMKQRKDCCPDVATY 303
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I+++V + + +++++G P +R +I + A+ + K + +E E
Sbjct: 304 NSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAANNVVWKAEALVQEMEG 363
Query: 469 AGFKLDKQTVVELLQIEKESR 489
+GF +D+ ++ + +R
Sbjct: 364 SGFFIDQAMYTVMIAMYVRAR 384
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 2/200 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG K G ++ A +L KD G + D ++ L N DK + + E
Sbjct: 665 KGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSN-DKADAALGVY-ETAVDSG 722
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L ++ C+ ++ + + E + G P V+Y T+I + A
Sbjct: 723 LKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGAR 782
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ ME D AY +I+ F L D+ A + +K+K G P+ + Y +I +
Sbjct: 783 MKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGY 842
Query: 451 MASGRLAKCRDVCKEAEMAG 470
KC D+ KE E G
Sbjct: 843 GRKYEFDKCFDLLKEMEDNG 862
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV YTTL++ + EA V M+ +NC D AY +I + A
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGL 414
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGR 455
F ++K+ G P Y MI + +GR
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGR 442
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 12/230 (5%)
Query: 249 KVPFKLENFVSLASKGVLEAT------AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
K+ F L+ F L ++ T G VK + A KL+ K+ + D Y
Sbjct: 683 KIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYT 742
Query: 303 KLILELGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHW 360
L+ LGK+ ++ + T + E G D+ T++M V + K +F
Sbjct: 743 SLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAY----TSLMDVLGKGGKLSHALIIFRA 798
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
P VV Y++LI S E + EA N + C ++ Y +I F
Sbjct: 799 MAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGM 858
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ RA+ F +++ P Y +++ +GRL + +E E G
Sbjct: 859 VDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVG 908
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 109/292 (37%), Gaps = 51/292 (17%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EA 268
ALQ F Q + L PD + V L + + + KL + S+ ++ +L +
Sbjct: 687 ALQIFNELQ-ESSLVPDTFVYNIMVNGLVKSNRVDEACKLVD--SMKNQNILPDLFTYTS 743
Query: 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN----------------- 311
G K G L+ A+ + + G D Y L+ LGK
Sbjct: 744 LLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR 803
Query: 312 --PDKYMLVMTLLDELGQRDDL--------NLSQQDCTAIMKVGI------RLQKFGVVE 355
PD + +L+D LG+ + N + CT VG+ K G+V+
Sbjct: 804 CVPD-VVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTP--NVGVYSSLIDSFGKKGMVD 860
Query: 356 SLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
F R P +V Y L+ + A ++ ME C+ DL Y ++I
Sbjct: 861 RALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILI 920
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ + A YF ++KE G P + +I + G++ K + C+
Sbjct: 921 DGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIE---SLGKVDKLLEACE 969
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 8/217 (3%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---G 326
G K G L+ A +L G ++ IY LI L + +K + + LL E+ G
Sbjct: 432 VNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCR-KEKVHVALNLLSEMCTKG 490
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ DL + KV + F LFH G V Y TLIH+ L
Sbjct: 491 CKPDLFTYNSLIYGLCKVDRIDEAF----RLFHNMLLDGAVANNVTYNTLIHALLRRGAF 546
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
++ALT+V +M C D Y +IK F + +I + + + ++ G M
Sbjct: 547 QKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIM 606
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
I G++ + ++A GF D T +L
Sbjct: 607 INGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLN 643
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL T G P ++Y TLIH+ + + EAL ++ M C+ D+ + VI
Sbjct: 239 SLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGL 298
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+N I A + ++ GF P Y ++ G+L + R +
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345
>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
Length = 1056
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 6/213 (2%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG + +KLL + K G + +Y L+ L KN K +L+ E+ + +D
Sbjct: 178 KGLCLTNRIGDGFKLLQIMKTCGVAPNTVVYNTLLHALCKN-GKVGRARSLMSEMKEPND 236
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ + +A +Q ++E F G P VV T ++ +E + EAL
Sbjct: 237 VTFNIL-ISAYCNEQKLIQSMVLLEKCFSL----GLVPDVVTVTKVMEVLCNEGRVSEAL 291
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ +E+ D+ A ++K + A+ + A R+F +++ G+ P + Y +I F
Sbjct: 292 EVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFFQEMERKGYLPNVETYNLLIAGF 351
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G L D + + + + T L++
Sbjct: 352 CDVGMLDSALDTFNDMKTDAIRWNFATFNTLIR 384
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F H G P+VV Y+ L+ + E R+A+ ++ M A C D+ Y V+I
Sbjct: 272 AVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAM 331
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
D+ A+ S L G P Y +++ S R
Sbjct: 332 CNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSER 371
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P ++ Y T+I + K EAL ++ M ++ D YR + + RA+R
Sbjct: 667 PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRM 726
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++++ G P Y D++ F R D +G D+ T V LL+
Sbjct: 727 LRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLE 782
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
C+ ++ + K E + H+G PT +Y TLI+ + + A ++ M+
Sbjct: 338 CSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMK 397
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ + D Y +I + I+ A +++++G P+ + + +I + +G+L
Sbjct: 398 SRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLE 457
Query: 458 KCRDVCKEAEMAGFK 472
KC V + + G K
Sbjct: 458 KCFTVLSDMQDKGIK 472
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 10/224 (4%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD--- 329
+ + G L+ + +L +D G + + ++ KN K + +LD++ +D
Sbjct: 450 YGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKN-GKIPEAVAILDDMIHKDVVP 508
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + A ++ G Q F +VE + SG ++ Y L+ + EA
Sbjct: 509 NAQVYNSIIDAYIESGGTEQAFLLVEKM----KSSGVSASIFTYNLLLKGLCKNSQIDEA 564
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+++N+ D+ +Y +I D RA+ ++ + PT Y ++
Sbjct: 565 EELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSA 624
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
++GR+ C M ++ + + + E ES++ ++
Sbjct: 625 LGSAGRVHDME--CLYQHMVHKNVEPSSSIYGTRCENESKVASL 666
>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
Length = 785
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 120/299 (40%), Gaps = 12/299 (4%)
Query: 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK-VPFKLEN 256
+++ V+ L +N + L F WA++Q P+D + L + + + +
Sbjct: 121 NMTHVVQALKIINESDALLSLFKWAKRQTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDE 180
Query: 257 FVSLASKGVLEATA-----KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-LELGK 310
V + K + +A K K L++++ +D G +D Y L+ L L K
Sbjct: 181 MVCDSIKSATQFSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNK 240
Query: 311 N-PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
P K + ++ D++ + ++ K G + LF P+
Sbjct: 241 GLPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSG----RLDAAFKLFQEMKERNFRPS 296
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+ ++++L+ S + ++ V M+ Y +I+ + + A+R +
Sbjct: 297 LGIFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWD 356
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
++K AGF P + +Y +I SG+L + ++ E AGF T LL++ S
Sbjct: 357 EMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAAS 415
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
+L+D +G+ L S MKV + +Q G+ P+ +MY +LI S
Sbjct: 302 SLVDSMGKAGRLETS-------MKVYMEMQGLGL-------------RPSAIMYVSLIES 341
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
K AL + M+ + + Y ++I+ + A+ F +++AGF PT
Sbjct: 342 YTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPT 401
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
Y ++ + ASG++ + AG + T LL +
Sbjct: 402 PSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLSTYTALLTL 446
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
++K + +K V F SG Y L+ L++ +A + MEA++
Sbjct: 198 VLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAFEIYETMEAAH 257
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
C D+ Y ++I + A + F ++KE F P+ I+ ++ +GRL
Sbjct: 258 CSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSM 317
Query: 461 DVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
V EM G L ++ + IE ++ G +
Sbjct: 318 KVY--MEMQGLGLRPSAIMYVSLIESYTKAGKL 348
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + + ++FG + L + PTVV Y +IH+ REA+ V ME
Sbjct: 367 TTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEG 426
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D Y +I + + A+ + +++E G P Y M+ G+LA
Sbjct: 427 AGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLA 485
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 11/141 (7%)
Query: 348 LQKFGVVESLFHW------FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
L + FHW F H G YTT+I K+ ++ M + NC
Sbjct: 340 LHDHNIALGFFHWLKRQPGFKHDGH-----TYTTMIGILGQAKQFGTMRKLLDEMSSVNC 394
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
+ Y +I + N + A++ F +++ AG+ P Y +I I SG L D
Sbjct: 395 KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMD 454
Query: 462 VCKEAEMAGFKLDKQTVVELL 482
+ + G D T ++
Sbjct: 455 LYGRMQEVGLSPDTFTYSAMV 475
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 16/281 (5%)
Query: 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV-SLASKGV 265
GH+ R L + L P+D + ++ L + +++ + + F+ SL KGV
Sbjct: 296 GHLQCAFRLLHLM----ETNGLVPNDWTFSVLIDALCKREKVE---EAQLFLGSLVKKGV 348
Query: 266 ------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
+ G K G + A +L+ G + D Y+ LI L + K +
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQ--KKLSQA 406
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
TL+ E + S T I+ +R + +F +G +P +V YT + S
Sbjct: 407 TLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRS 466
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
E + +A +++ M +L Y +I+ + L +S+A F + G+ P
Sbjct: 467 YCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPN 526
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
D Y ++R+ + D+ K A+M ++ + + E
Sbjct: 527 EDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITE 567
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 98/262 (37%), Gaps = 20/262 (7%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLAS--------TVEVLARHHELK--VPFKLENFVSLA 261
P R L T A + +FPD LAS T L + L +P ++ SL
Sbjct: 40 PLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLL 99
Query: 262 SKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
G+ + G+ + G L A ++ ++ G + Y L+ L
Sbjct: 100 HAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGL---LGAG 156
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYT 374
M+ + +G R D A M G+ + E L +G +P +V+Y
Sbjct: 157 MVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYN 216
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
LI + + AL V M+ + C ++ Y +I + RA+ FS++ EA
Sbjct: 217 ALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEA 276
Query: 435 GFCPTYDIYRDMIRIFMASGRL 456
G P Y +I+ G L
Sbjct: 277 GLEPNVVTYTALIQGQCNEGHL 298
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+VV YT+L+ + EK + ++ M C ++ Y +++ A
Sbjct: 359 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 418
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ F KLKE G P Y +I I +GRL V +E G + T L+
Sbjct: 419 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLI 476
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 107/293 (36%), Gaps = 31/293 (10%)
Query: 203 VRELGHMNL-PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLA 261
V L +NL P+ AL W + P+ + AS V +L ++P+++ L
Sbjct: 30 VSSLFSLNLDPQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQ---EIPYEVPKITILM 86
Query: 262 SKGVLEATAKGFV--------KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GK 310
K FV KG + ++ +KL P Y L+ L G
Sbjct: 87 IKSCNSVRDALFVVDFCRTMRKGDSFEIKYKL-----------TPKCYNNLLSSLARFGL 135
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
+ L +L++L D + K+G ++ + W +G DP
Sbjct: 136 VEEMKRLYTEMLEDLVSPDIYTFNTL-VNGYCKLGYVVE----AKQYVTWLIQAGCDPDY 190
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
YT+ I K+ A V M + C + +Y +I I A+ K
Sbjct: 191 FTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVK 250
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+K+ CP Y +I SG+ ++ ++ K+ +G K D L+Q
Sbjct: 251 MKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQ 303
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F T +G V YT LI+ KK EAL+++ M+ NC ++ Y V+I
Sbjct: 212 VFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALC 271
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
S A+ F ++ E+G P +Y +I+ F + L
Sbjct: 272 GSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTL 311
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF + SG P MYT LI S S EA ++ +M + + ++ Y +IK F
Sbjct: 281 NLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGF 340
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
N + +A+ SK+ E P Y +I +SG L + E +G ++
Sbjct: 341 CKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQ 399
Query: 476 QTV 478
+TV
Sbjct: 400 RTV 402
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 2/170 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
G KGG +A L G D Y+ I L K ++ +DE+ Q+D
Sbjct: 448 NGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSRE-GLSFIDEMLQKD- 505
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ S + T ++ + + +G+ ++ G P VV YTT + + +E + EA
Sbjct: 506 VKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAE 565
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
VV M+ + D AY +I ++ A+ + P +
Sbjct: 566 NVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNH 615
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG----KNPDKYMLVMTLLD 323
A +GF + G + A +L + P +Y L G + ++ + ++ +
Sbjct: 204 ALIEGFCETGRVDEALELFR------ELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMK 257
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
ELG R + + A++ + R QK E + + +G P V T ++++ E
Sbjct: 258 ELGWRP----ATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCRE 313
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
+ A+ V +M+ C ++ Y +++ F + + +A+ +++E G P Y
Sbjct: 314 GRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTY 373
Query: 444 RDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+IR G + + + E G D+ T
Sbjct: 374 NLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYT 407
>gi|356574070|ref|XP_003555175.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 720
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F + G DP + L+ + + EA TV+ M C DL Y +I LF
Sbjct: 219 FRRMNNKGCDPNSKTFEILVKGLIESGQVDEAATVLEQMLKHKCQPDLGFYTCIIPLFCR 278
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
N + A++ F +K++ F P IY ++R F
Sbjct: 279 ENKVEEAVKLFKMMKDSDFVPDSFIYEVLVRCF 311
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 350 KFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
KFG ++ LF G P V +YTT+I++ E EAL NME C D
Sbjct: 492 KFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEF 551
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
+Y V+I+ F+ D SRA + ++++ GF
Sbjct: 552 SYNVIIRGFLQYKDESRAAQLIGEMRDRGF 581
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ LF+ H G P V Y TLIH + REA + NM ++ L DL Y +++
Sbjct: 395 KQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDG 454
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
F + +A R F ++ P +Y +I G L R + E + G
Sbjct: 455 FCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQG 510
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI---------------RLQKFGV 353
G +PD Y L + L+D ++L+ + ++K+G+ ++ KF
Sbjct: 125 GLSPDIYTLSI-LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQ 183
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
F F SG PTV YTT+I+ + A + ME + C ++ Y ++I
Sbjct: 184 AVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILID 243
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
++ A+ FS +K P Y +I+
Sbjct: 244 SLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQ 278
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F+ G P+++ YTTL+ + +K L+++ +E + D + +I
Sbjct: 363 SIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS 422
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ +A++ F K+KE+G PT + +I+ + G+L
Sbjct: 423 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKL 463
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 12/213 (5%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDKYMLVMTLLDELGQRDDLN 332
GNL A K+ K+ G S + LI GK +L M L DE+ Q +D
Sbjct: 426 GNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND-- 483
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI--HSRLSEKKCREAL 390
+ C +++ +K ++ + G P VV + TL ++R+ C
Sbjct: 484 ---RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGST-CTAED 539
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ M + ++ ++ + + A+R+F ++KE G P ++ +I+ F
Sbjct: 540 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 599
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + +V E G K D T L+
Sbjct: 600 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 632
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 8/217 (3%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---G 326
G K G L+ A +L G ++ IY LI L + +K + + LL E+ G
Sbjct: 432 VNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCR-KEKVHVALNLLSEMCTKG 490
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ DL + KV + F LFH G V Y TLIH+ L
Sbjct: 491 CKPDLFTYNSLIYGLCKVDRIDEAF----RLFHNMLLDGAVANNVTYNTLIHALLRRGAF 546
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
++ALT+V +M C D Y +IK F + +I + + + ++ G M
Sbjct: 547 QKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIM 606
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
I G++ + ++A GF D T +L
Sbjct: 607 INGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLN 643
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL T G P ++Y TLIH+ + + EAL ++ M C+ D+ + VI
Sbjct: 239 SLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGL 298
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+N I A + ++ GF P Y ++ G+L + R +
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345
>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia salsoloides]
Length = 433
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 10 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK +GF P Y I +F + + R + E +AG + + LL + E
Sbjct: 70 FSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYSTLLTMYVE 129
Query: 488 SR 489
++
Sbjct: 130 NK 131
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A + V + + F S
Sbjct: 46 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAXINVFGKAKLFREARS 103
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V + CL DL ++I ++
Sbjct: 104 LISEMRIAGVMPNTASYSTLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYG 163
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 164 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 197
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 105/290 (36%), Gaps = 35/290 (12%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
L R I L + + V+ VL L L ++ LG +AL+ F W ++ +
Sbjct: 20 LLRKIVVLPNDECVSSVLTTSEPNLSSSELLSIMKGLGREGQWNKALEVFNWMRQSVNFR 79
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVA 289
PD +A + +L R +L +L F SL
Sbjct: 80 PDGVTIAVMLRILGRESQLTTVSRL--FKSL----------------------------- 108
Query: 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ 349
++ G LD Y LI L +N K+ + +++ + I G + +
Sbjct: 109 REEGYPLDVYAYTSLISALSRNR-KFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR 167
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+ + LF G P Y T I + S C EA + M++SNC D Y
Sbjct: 168 SWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYN 227
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
++ ++ + A +++ AG P Y +++ F GR C
Sbjct: 228 ALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAF---GRAGLC 274
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P V YT+L+ + K +A+ + M SNC + + +I + + S
Sbjct: 288 GIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEM 347
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F ++ G P + ++ F +G ++ V + + AGF+ DK T L I
Sbjct: 348 MVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNIL--I 405
Query: 485 EKESRIGT 492
E R G+
Sbjct: 406 EAYGRCGS 413
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 117/290 (40%), Gaps = 10/290 (3%)
Query: 200 SFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST-VEVLARHHELKVPFKLENFV 258
++ +RELG+ ++A+ + +A K+ + LAS + L R+ ++ + ++ F
Sbjct: 200 TYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRI--FE 257
Query: 259 SLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP 312
+ S G A + + G + A + K+ G + Y +I GK
Sbjct: 258 TAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGG 317
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
++ V DE+ QR+ + + +++ V R + +LF ++ + V
Sbjct: 318 MEFKQVAKFFDEM-QRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFS 376
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y TL+ + + A ++ M A + ++ +Y VI F A+ F +++
Sbjct: 377 YNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
Y ++ I+ GR + D+ +E G K D T LL
Sbjct: 437 YLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALL 486
>gi|449461469|ref|XP_004148464.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01390-like [Cucumis sativus]
Length = 1058
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%)
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
Q T ++ + + + +F G V YT+L+H R + A+ +
Sbjct: 182 QYTYTTMLDIFGEAGRISSMNYVFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKLWK 241
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+A+ C + +Y IK+ + I+ A + K+ ++G P IY ++ + G
Sbjct: 242 EMKANGCHPTVVSYTAYIKILLDNGQINEATATYKKMLQSGLSPNCCIYTILMEYLIGEG 301
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + D+ + + AG DK L+Q
Sbjct: 302 KCKEALDIFSKMQDAGVYPDKAACNILIQ 330
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH G + V ++TTL+ E + AL+++ M++++ DL Y V I F
Sbjct: 224 TLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCF 283
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+ + A ++F ++K G P Y +I + + RL + ++ +E ++
Sbjct: 284 GKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDL 336
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 110/282 (39%), Gaps = 24/282 (8%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHEL----KVPFKLENFVSLASKGVLEATAKGFVKGGNL 279
K+ LFP+ + ++ L + +L + L++ V + G + G +
Sbjct: 439 KEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRV 498
Query: 280 KLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNL--S 334
A+ L D ++ + +Y LI + G+ D + + ++ G DL L S
Sbjct: 499 DDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHR-GCSPDLMLLNS 557
Query: 335 QQDCTAIMKVGIRLQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
DC K G VE +LF G P V Y+ LIH + RE
Sbjct: 558 YMDCVF---------KAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYK 608
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ + M+ D+ AY VI F + +A + ++K G PT Y ++
Sbjct: 609 LFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLA 668
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ G +D V+ I+ ++G I
Sbjct: 669 KIDRLDEAYMLFEEAKSIG--VDLNVVIYSSLIDGFGKVGRI 708
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L G P V Y TL+++ L + + +EA +++ M A+ C +L + ++IK
Sbjct: 58 LLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLC 117
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+I A R ++ + GF P +I+ ++ GR+ + ++ + GF D
Sbjct: 118 KEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAV 177
Query: 477 T 477
T
Sbjct: 178 T 178
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 21/163 (12%)
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
R+LD K LE G P+ + TL+D L + ++ + Q ++++G R
Sbjct: 523 RILDAHNVFKRALERGCRPN-VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR------ 575
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V Y+T++ L + +A+ V+ M + CL D Y +I
Sbjct: 576 --------------ANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLID 621
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
F + A+ ++ EAGF P+ Y + SGR
Sbjct: 622 GFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRF 664
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F G P VV Y+TLI K EAL ++ M C + Y V+
Sbjct: 529 NVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGL 588
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ + + A+ ++++AG P Y +I F RL + + +E AGF
Sbjct: 589 LKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF 644
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 22/165 (13%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
GRM D + + + + G PD + TL+D +R L + VG+ +
Sbjct: 592 GRMEDAVVVLRQMRDAGCLPDA-VTYNTLIDGFFKRQRLREA---------VGLLRE--- 638
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
++E+ FH P+VV YTTL H + EA+ ++ M A C + Y ++
Sbjct: 639 MLEAGFH--------PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV 690
Query: 413 KLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRL 456
++ A+ YF K+ ++ P Y +I +GR+
Sbjct: 691 DGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRI 735
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G+ ++A KLL + G D Y +I L K + L +E+ R +L
Sbjct: 901 GLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSK-AKQLPLACDYFEEM-LRKNL 958
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
++++ + K V+ + SG +PT+ MY+T++ S + +AL
Sbjct: 959 KPDAIVYSSLIDAFCKADK---VDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALE 1015
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
V+ M++ NC + + + +VA + A++ + L+
Sbjct: 1016 VIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 8/223 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V A G +K GN + A ++ K Y LI GK YM + L +E
Sbjct: 220 VYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYM-ALKLFNE 278
Query: 325 L-GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
+ Q+ N+ TA++ R E +F G +P V Y L+ +
Sbjct: 279 MRSQKCKPNICTY--TALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRA 336
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFV--ALNDISRAIRYFSKLKEAGFCPTYD 441
A + M+ C D +Y +++ + L++ ++A+ F ++K G PT
Sbjct: 337 GFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAV--FEEMKRLGITPTMK 394
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ ++ + +G +AKC D+ E +G + D + +L +
Sbjct: 395 SHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNL 437
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 88/249 (35%), Gaps = 35/249 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-------------------LEL 308
G+ + G L WKL+ V K G + IY +I +
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQ---------------DCTAIMKVGIRLQKFGV 353
G PD ++ TL+D +R D+ + + TAI+ ++
Sbjct: 346 GILPDT-VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 404
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
LFH G +P V +T LI+ ++A V +M + C ++ Y +I
Sbjct: 405 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 464
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
D+ A ++ + G P Y ++ SG + + + E E AG
Sbjct: 465 GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 524
Query: 474 DKQTVVELL 482
D T L+
Sbjct: 525 DTVTYTTLM 533
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 8/183 (4%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNL 333
G +K A LL++ + G D Y+ ++ G+ + L+ E+ +R L
Sbjct: 260 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI-----EVMKRKGLKP 314
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ +I+ + R+ K E F G P V+YTTLI R A
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
+ M + + D+ Y +I F + D+ A + F ++ G P + ++I + +
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434
Query: 454 GRL 456
G +
Sbjct: 435 GHM 437
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 32/224 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
+ G K GN++ A KL+ + G D Y TL+D +
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT-----------------TLMDAYCK 538
Query: 328 RDDLNLSQQDCTAIMKVGIR--LQKFGVV-------------ESLFHWFTHSGRDPTVVM 372
+++ +Q+ ++ G++ + F V+ E L +W G P
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
+ +L+ + A + +M + D Y ++K ++ A F ++K
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
GF + Y +I+ F+ + + R+V + G DK+
Sbjct: 659 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKE 702
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
F G V YT I++ + +A+ + M C D Y +I
Sbjct: 320 FFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLA 379
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ A SKLKEAGFC Y +I F +L + ++ E E+AG K D
Sbjct: 380 QAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSV 439
Query: 477 TVVELLQIEKESRIGT 492
T L I S+IG
Sbjct: 440 TYNTL--ISYFSKIGN 453
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
V LF+ ++ +P V+ TL+ + A+ M+ + Y V I
Sbjct: 281 VAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFI 340
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F +N++++A+ + ++ + G P +Y +I +GRL V + + AGF
Sbjct: 341 NAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFC 400
Query: 473 LDK 475
LD+
Sbjct: 401 LDR 403
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%)
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
+ G P V+Y TLI + +A +VV ++ + D Y V+I F N
Sbjct: 359 MSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNK 418
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ RA + ++++ AG P Y +I F G
Sbjct: 419 LDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNF 454
>gi|356533844|ref|XP_003535468.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 813
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PT V + T+I+ + + E +V ME C + Y ++I L+ +DI A
Sbjct: 303 GVAPTTVTFNTMINICGNHGQLEEVSLLVRKMEELRCSPNTRTYNILISLYAKHDDIGMA 362
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+YF +KEA P YR ++ + + + ++ KE + ++D+ T
Sbjct: 363 TKYFEIMKEACLEPDLVSYRTLLYAYSIRKMVGEAEELVKEMDERRLEIDQYT 415
>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 825
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 45/289 (15%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD V L +H KV + KGV A G+ KGG++K A
Sbjct: 264 PDCWTYTQVVHGLCKHG--KVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAAL 321
Query: 284 KLLMVAKDGGRMLDPSI--YAKLI--LELGKNPDKYMLVMTLLDELGQRDDLN-----LS 334
+L + K ++P + + ++I G K M +T + G + +S
Sbjct: 322 DVLQLMKR--NRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLIS 379
Query: 335 QQDCTAIMKVGIRL----QKFGVV----------------------ESLFHWFTHSGRDP 368
Q K+ +RL +++GV+ SLF G
Sbjct: 380 GQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKA 439
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
V+YT+L+H A ++ M + NC+ D+ Y +I + + RAI
Sbjct: 440 HNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLL 499
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
K+K+ G PT + +I+ + + A + ++ +G K DKQT
Sbjct: 500 DKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQT 548
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F+ G P+++ YTTL+ + +K L+++ +E + D + +I
Sbjct: 340 SIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS 399
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ +A++ F K+KE+G PT + +I+ + G+L
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKL 440
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 12/213 (5%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDKYMLVMTLLDELGQRDDLN 332
GNL A K+ K+ G S + LI GK +L M L DE+ Q +D
Sbjct: 403 GNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND-- 460
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI--HSRLSEKKCREAL 390
+ C +++ +K ++ + G P VV + TL ++R+ C
Sbjct: 461 ---RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGST-CTAED 516
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ M + ++ ++ + + A+R+F ++KE G P ++ +I+ F
Sbjct: 517 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + +V E G K D T L+
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
Length = 788
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 8/193 (4%)
Query: 294 RMLDPS--IYAKLILELG--KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ 349
R++ PS ++A LI G + P + + + L ELG + + + A+ K +R
Sbjct: 207 RLVPPSEDMFASLIEGYGCARIPQEAVKIFRRLPELG----VTRTVRSYDAVFKAILRSG 262
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+ + LF+ G P + Y TL+ K A +M+ DL Y
Sbjct: 263 RVAMARRLFNAMIAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMKERGIAPDLVTYN 322
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++ + + A + F+++ AGF P Y MI+ ++ SGR+ + E
Sbjct: 323 TILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNIMIKGYVCSGRVDDGLRMFSEMGEK 382
Query: 470 GFKLDKQTVVELL 482
G + ++T L+
Sbjct: 383 GLRFSEKTFAALM 395
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F+ G P+++ YTTL+ + +K L+++ +E + D + +I
Sbjct: 340 SIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS 399
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ +A++ F K+KE+G PT + +I+ + G+L
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKL 440
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 12/213 (5%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDKYMLVMTLLDELGQRDDLN 332
GNL A K+ K+ G S + LI GK +L M L DE+ Q +D
Sbjct: 403 GNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND-- 460
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI--HSRLSEKKCREAL 390
+ C +++ +K ++ + G P VV + TL ++R+ C
Sbjct: 461 ---RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGST-CTAED 516
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ M + ++ ++ + + A+R+F ++KE G P ++ +I+ F
Sbjct: 517 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + +V E G K D T L+
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++F + L G P VV Y +IHS ++A+ V M+ + C D
Sbjct: 391 RAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRV 450
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y +I + + A+ + K+++AG P Y MI +G L
Sbjct: 451 TYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHL 500
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
TL + G + D+ + + + + Q G+++S+ G +P +V Y +L+
Sbjct: 625 AFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHE----DGLNPDLVTYNSLM 680
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ +C +A ++ +E S DL +Y VIK F + A+R S++ E G
Sbjct: 681 DMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIR 740
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDV 462
P Y + + A G + DV
Sbjct: 741 PCIFTYNTFVSGYTAMGMYGEIEDV 765
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 16/254 (6%)
Query: 213 ERALQTFCW---AQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL--------A 261
ERA+ F W + L D ++ V +L R + V KL + + L A
Sbjct: 160 ERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRA 219
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
+L A + + G + A L K+ G Y ++ GK + ++ +
Sbjct: 220 YTTILHA----YSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 275
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
L+E+ + L + C+ ++ R + F G +P V Y L+
Sbjct: 276 LEEM-RSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFG 334
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
EAL+V+ ME +NC D Y ++ + A + + G P
Sbjct: 335 KAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAI 394
Query: 442 IYRDMIRIFMASGR 455
Y +I + +G+
Sbjct: 395 TYTTVIDAYGKAGK 408
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 301 YAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGIRLQKFGVVESL 357
Y L+ GK Y +++L E+ + + D + A + G + V+E +
Sbjct: 326 YNALLQVFGK-AGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMM 384
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
T G P + YTT+I + K EAL + ++M+ + C+ + Y V+ +
Sbjct: 385 ----TQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGK 440
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ + I+ +K G P + ++ + G V +E + GF+ D+ T
Sbjct: 441 KSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDT 500
Query: 478 VVELLQ 483
L+
Sbjct: 501 FNTLIS 506
>gi|356574710|ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 821
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
TL+D G+ L + Q ++K G+ PT V + T+I+
Sbjct: 286 TLIDTYGKAGQLKEASQTFVEMLKQGVA--------------------PTTVTFNTMINI 325
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
+ + E +V ME C + Y ++I L +DI A +YF +KEA P
Sbjct: 326 CGNHGRLEEVSLLVRKMEELRCSPNTRTYNILISLHAKHDDIGMATKYFETMKEACLEPD 385
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
YR ++ + + + ++ KE + ++D+ T L ++ E+
Sbjct: 386 LVSYRTLLYAYSIRKMIREAEELVKEMDKRRLEIDQYTQSALTRMYIEA 434
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F + +G +P + Y LI+ ++ EA+ ++W ME CL D + V+I+ +
Sbjct: 449 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLK 508
Query: 418 LNDISRAIRYFSKLKEAGFCP 438
N+I AI+ +++ F P
Sbjct: 509 ENEIHEAIQLLEEMRNRNFSP 529
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 102/257 (39%), Gaps = 37/257 (14%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE--ATAKGFVKGGNLKLAWKL 285
+ PD + +S ++ L R LK LE F + +G+ T + G + WK
Sbjct: 177 ILPDVVVYSSLMDGLCRFGRLKEA--LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWK- 233
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345
+ + + L+++ G +PD + + L+D L + + +QQ
Sbjct: 234 -----------EVTWFLNLMVDRGFSPDAFTFTI-LIDGLCKEGKVGEAQQ--------- 272
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+ L H H G++P ++ Y TL++ + +A + ++ ++
Sbjct: 273 --------ILELMH---HKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNV 321
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+Y ++I + I A R F +++ G P+ Y +I SGR+ + + E
Sbjct: 322 FSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVE 381
Query: 466 AEMAGFKLDKQTVVELL 482
+ G L T LL
Sbjct: 382 MQTCGQFLKLSTYCVLL 398
>gi|255540497|ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550428|gb|EEF51915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 627
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 11/265 (4%)
Query: 200 SFTVRELGHM-NLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL----KVPFKL 254
+F +R L + N P +ALQ F WA K + + VL R + V ++
Sbjct: 230 NFVIRVLKELRNYPLKALQFFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEM 289
Query: 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK 314
+N ++ F K + A KL DG PS+ +L +
Sbjct: 290 KNAGHEMDIDTYIKISRQFQKNKLMGDAVKLYEFMMDGP--FKPSVQDCSMLLRSISASN 347
Query: 315 Y---MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
Y LV ++++ + +LS+ I + + F + +G +P +
Sbjct: 348 YPDLNLVFRVVNKYEATGN-SLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNI 406
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y+ L+ ++ EA V+ MEA CL D+ + ++I+ N++ +A+ +K+
Sbjct: 407 TYSQLVFGLCKARRLEEACEVLDEMEAHGCLPDIKTWTILIQGHCVANEVGKALMCLAKM 466
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRL 456
E P D+ +I F++ R+
Sbjct: 467 MEKHCDPDADLLAVLINAFLSQKRI 491
>gi|357442727|ref|XP_003591641.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|92882355|gb|ABE86686.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355480689|gb|AES61892.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PT V + T+IH + + E +++ M C D Y +I L NDI A
Sbjct: 315 GIPPTTVTFNTMIHICGNHGRLEEVSSLLRKMGELRCSPDTRTYNTLISLHTKHNDIDMA 374
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+YF ++KE+ P YR ++ + + + ++ E + G ++D+ T L ++
Sbjct: 375 TKYFKRMKESYLEPDPVSYRTLLYAYSIRKMVCEAEELITEMDEKGLEIDQFTQSALTRM 434
Query: 485 EKES 488
E+
Sbjct: 435 YIEA 438
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++F + L G P VV Y +IHS ++A+ V M+ + C D
Sbjct: 391 RAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRV 450
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y +I + + A+ + K+++AG P Y MI +G L
Sbjct: 451 TYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHL 500
>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 2/228 (0%)
Query: 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326
A + + G + A +L K G Y +I GK + ++
Sbjct: 237 SALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQM- 295
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
RD L ++ +++ R +LF H G + Y T I +
Sbjct: 296 LRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNI 355
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
A+ V+ +MEA N ++ Y +I + L A++ + K+K G Y +
Sbjct: 356 ELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTV 415
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ-IEKESRIGTI 493
+ I++ +G+ + VC E E +G + D T L+ K+ R+ +
Sbjct: 416 LAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIV 463
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 28/226 (12%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KGF + G ++ AWK D + +A L +N Y +++ L + G D+
Sbjct: 342 KGFCQAGRVQEAWKFW----------DSAGFAGL-----RNLRTYNIMIKGLFDSGMVDE 386
Query: 331 ----LNLSQQDCTAI---MKVGIRLQKF---GVVESLFHWFTH---SGRDPTVVMYTTLI 377
+L ++D I + G + G F F SG+ V Y+++I
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMI 446
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ + + +A+ V M+ C + Y +I F + S A+R +SK+ + G
Sbjct: 447 NGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCS 506
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
PT Y +I + + + V +E GF D T L++
Sbjct: 507 PTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIR 552
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ +K+ S+ +G P + Y +LI S+KK +AL++ + D+
Sbjct: 521 KAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVM 580
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCP----TYDIYRD 445
+ ++I + + A+ FS +KE CP TY+ D
Sbjct: 581 MHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMD 623
>gi|294462290|gb|ADE76694.1| unknown [Picea sitchensis]
Length = 433
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 36/298 (12%)
Query: 162 KNPSFLISLARDIKGL--DSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTF 219
KN L AR+I L +D+ E L + G L + R G +++P AL+ F
Sbjct: 92 KNKWELEDAAREICQLLEKGDEDMEEALTQLGVTL---TPELVNRVFGKISVPSLALRFF 148
Query: 220 CWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL-EATAKGFVKGGN 278
WA+ QP + + S E LA F+ + + L V +AK F +
Sbjct: 149 QWAKLQPGF----KQVTSNYERLANILGRAKDFEALHMILLEMSAVFCNYSAKTF----S 200
Query: 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY-MLV------------MTLLDEL 325
AW D ML+ + LEL Y MLV + +L+++
Sbjct: 201 FATAWH------DDPDMLNEVMEMLEKLELYLRTVAYEMLVSVLCQKNHANAALVVLEKM 254
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
G RD L + ++++ + + V+ +F RDP + Y ++ + + KK
Sbjct: 255 GSRD-CALRMRTYRPLIQLYCQKNRMAKVQEVFEMLKDCPRDP--ICYHIVLSALCNRKK 311
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
EA+ V M D + ++I+ L I A++ F +LKE G P Y Y
Sbjct: 312 FAEAVKFVKRMVNMGWKPDAITHDIMIRAACNLGRIQGALKLFDRLKEEGLTPLYQTY 369
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 51/121 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+++W G P VV YT ++ +A ++ NM+ NC + + IK
Sbjct: 408 VWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLC 467
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ AI+ F ++ +G P Y +++ + R + + K+ E G +L+
Sbjct: 468 GSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLV 527
Query: 477 T 477
T
Sbjct: 528 T 528
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G DP V+ YTT+I++ +L V+ M A C +L + +IK F A
Sbjct: 276 GIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEA 335
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ ++ ++ G P Y ++ + L V + E+ G
Sbjct: 336 LDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING 381
>gi|226493938|ref|NP_001152190.1| ATP binding protein [Zea mays]
gi|195653677|gb|ACG46306.1| ATP binding protein [Zea mays]
gi|413926813|gb|AFW66745.1| ATP binding protein [Zea mays]
Length = 376
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 4/172 (2%)
Query: 312 PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
P + V+ +L + G R D +L A+MK + G V +F G DP +V
Sbjct: 164 PREISRVLPVLRDHGVRADAHLYN----ALMKANVAADDPGAVLRVFRQMRSDGVDPDLV 219
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y TLI +A + M A L D+ Y ++ D A++ ++
Sbjct: 220 TYNTLIFGLARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMNGMCVKGDALGALKLLEEM 279
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ G P Y ++ + +L K +V K AG KL+ ++
Sbjct: 280 QGKGCQPNERTYSTLLMGLCKNKKLDKAVEVYKSMAAAGTKLESPAYASFVR 331
>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
Length = 680
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P V Y+TL++ + +K EAL+V+ M+ NC DL ++I ++ L+ + A R
Sbjct: 297 PDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRL 356
Query: 428 FSKLKEAGFCPTYDIYRDMIRIF 450
F ++++ G P Y ++R++
Sbjct: 357 FWRMRKIGIEPNVVSYNTILRVY 379
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F SG P +V Y T+I+ K REA ++ M A + + D +Y ++ +F
Sbjct: 250 SIFSRLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMF 309
Query: 416 VALNDISRAIRYFSKLKEAGFCP 438
V A+ S++KE CP
Sbjct: 310 VENEKFLEALSVISEMKEVN-CP 331
>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
Length = 615
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 100/249 (40%), Gaps = 2/249 (0%)
Query: 236 ASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM 295
A V+ R +E LE S+G+ E K G++++A + ++ G
Sbjct: 205 AGMVQPAIRTYEFAC--NLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSS 262
Query: 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355
+PSI A IL G + + L +++ ++ + +++ R++ +
Sbjct: 263 FEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAI 322
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
L G +P ++Y ++ + + +EAL ++ + Y ++K +
Sbjct: 323 ELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGY 382
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
D+S A + + GF PT Y R F G++ + + + +G+ DK
Sbjct: 383 CKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDK 442
Query: 476 QTVVELLQI 484
T LL++
Sbjct: 443 LTYHLLLKM 451
>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
Length = 504
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 116/304 (38%), Gaps = 53/304 (17%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------ 265
P+ A + F WA +Q + ++V A E+K ++L F + KG+
Sbjct: 159 PKLAYKFFIWAGQQEGYQHGTSMYNLVMKVFAECGEVKAMWRL--FEEMMDKGLPVSSRT 216
Query: 266 ----LEATAK---------GFVKGGNLK----------LAWKLLMVAKDGGRMLDPSIYA 302
+ A+ K GF+K + LL + + L ++
Sbjct: 217 FHLLICASGKAGLRRRLVEGFIKSSTFNYRPFRNAFNAILHTLLTIEQ---YSLIEWVHE 273
Query: 303 KLILELGKNPD----------KYML-----VMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347
K+ILE G +PD KYML LLDE+G RD L ++ V +
Sbjct: 274 KMILE-GYSPDVLTYNVVMRAKYMLGKLDQFHRLLDEMG-RDGLTPDLHTYNLLLHVLGK 331
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN-MEASNCLFDLP 406
K +L ++ + G P V+ +T LI L EA ++ M C D+
Sbjct: 332 GDKPLAALNLLNYMSDVGCVPNVLHFTNLIDG-LGRAGNLEACKYFFDEMIKKGCDPDVV 390
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y V+I +VA + A R+F + G P Y MIR G K + K+
Sbjct: 391 CYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNVYTYNSMIRGLCTVGEFDKAFAMLKDM 450
Query: 467 EMAG 470
+ G
Sbjct: 451 DSHG 454
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 348 LQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L + G +E+ ++F G DP VV YT +I S ++ + EA +M L +
Sbjct: 364 LGRAGNLEACKYFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPN 423
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ Y +I+ + + +A + G P + +Y ++ ++G+ + +V K
Sbjct: 424 VYTYNSMIRGLCTVGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAGKDTQANNVIK 483
>gi|357165906|ref|XP_003580534.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Brachypodium distachyon]
Length = 775
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 11/227 (4%)
Query: 263 KGVLEATAKGFVKGGNLKLAWKLL--MVAKDGGRMLDPSIYAKLILELGKNP--DKYMLV 318
KG E + G + + KL M +DG P +Y+ ++ L K+ D M +
Sbjct: 252 KGTYELAVPALARAGRIDASRKLFDEMRQRDGVGRASPGVYSVMVDVLAKSGRLDAAMGM 311
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+ +G R +S TA+++ +R K L+ G P+ +YT ++
Sbjct: 312 YREMVAVGHR----VSTSVSTAMVEGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVE 367
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPA-YRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ + A + +ME S F PA Y ++++ + + A+R + + AG
Sbjct: 368 ANARSGRLDVAAKLFGDMEKSG-FFPTPATYACLVEMHASAGQVDIAMRMYHSMANAGTR 426
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
P + ++ + L V E + +GF ++ T +LL I
Sbjct: 427 PGLSTFTALLTMLANKRLLDLAAKVLLEMKASGFPIE-VTASDLLMI 472
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G PT V YT +I + L K +A V+ M + C FDL Y ++I F
Sbjct: 1828 LFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFA 1887
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ +A+ F ++ G P Y ++ F +G++ + + E + G + +
Sbjct: 1888 KAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGR 1947
Query: 477 TVVEL 481
T +
Sbjct: 1948 TYTSI 1952
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 10/224 (4%)
Query: 226 PHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKL 285
P+ +++S EV ++ + E VS V A G K + K +L
Sbjct: 213 PNAVSYTTVISSMCEVGMVKEGRQLAERFEPVVS-----VYNALINGLCKERDYKGGVEL 267
Query: 286 LMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343
+ + G + P++ Y+ LI EL N + L +LL ++ +R + +
Sbjct: 268 MSEMVEKG--ISPNVISYSTLINEL-SNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKG 324
Query: 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
+R F ++ G P VV Y TL+ S +A++V +ME C
Sbjct: 325 CFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSP 384
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
++ Y +I F + A+ ++K+ +G CP +Y M+
Sbjct: 385 NIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMV 428
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 82/198 (41%), Gaps = 13/198 (6%)
Query: 293 GRMLDPSIYAKLILELG----KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
G L P++ A L G N DK + V ++E+G ++ K G
Sbjct: 344 GFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRG--- 400
Query: 349 QKFGVVESLFHW--FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ +++ W SG P VV+YT+++ + K +EA +++ M NC +P
Sbjct: 401 ---SLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVP 457
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI-YRDMIRIFMASGRLAKCRDVCKE 465
+ IK + A + F ++++ CP + Y +++ + R+ + + +E
Sbjct: 458 TFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTRE 517
Query: 466 AEMAGFKLDKQTVVELLQ 483
M G + T LL
Sbjct: 518 IFMRGVEWSTSTYNTLLH 535
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 28/226 (12%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KGF + G ++ AWK D + +A L +N Y +++ L + G D+
Sbjct: 342 KGFCQAGRVQEAWKFW----------DSAGFAGL-----RNLRTYNIMIKGLFDSGMVDE 386
Query: 331 ----LNLSQQDCTAI---MKVGIRLQKF---GVVESLFHWFTH---SGRDPTVVMYTTLI 377
+L ++D I + G + G F F SG+ V Y+++I
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMI 446
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ + + +A+ V M+ C + Y +I F + S A+R +SK+ + G
Sbjct: 447 NGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCS 506
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
PT Y +I + + + V +E GF D T L++
Sbjct: 507 PTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIR 552
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ +K+ S+ +G P + Y +LI S+KK +AL++ + D+
Sbjct: 521 KAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVM 580
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCP----TYDIYRD 445
+ ++I + + A+ FS +KE CP TY+ D
Sbjct: 581 MHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMD 623
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 22/258 (8%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE------ATAKGFVKGGNLKLAW 283
PD S + R +L+V L F + +G + A +GF + G + A
Sbjct: 162 PDAFTFNSLILGYCRTQQLEVAHDL--FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEAL 219
Query: 284 KLLMVAKDGGRMLDPSIYAKLILELG----KNPDKYMLVMTLLDELGQRDDLNLSQQDCT 339
+L M P +Y L G ++ + ++ + ELG R + +
Sbjct: 220 ELFR------EMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRP----TTRAYA 269
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A++ + R QK E + + SG P VV T ++++ E + A+ V +M
Sbjct: 270 ALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFK 329
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
C ++ Y +++ F + +A+ +++E G P Y +IR G +
Sbjct: 330 GCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSA 389
Query: 460 RDVCKEAEMAGFKLDKQT 477
+ + E G D+ T
Sbjct: 390 FRLLRLMEGNGLAADQYT 407
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 2/170 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
G K G +A L G D Y+ I L K + +DE+ Q+D
Sbjct: 448 NGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLF-FIDEMLQKD- 505
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ S + T ++ + +G+ ++ G P VV YTT + + +E + EA
Sbjct: 506 VKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAE 565
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
VV M+ + D AY +I ++ RA+ + P +
Sbjct: 566 NVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNH 615
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G DP VV YT LI + KK EA+ ++ M C +L Y V++ L+ + A
Sbjct: 174 GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 233
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
K+ E GF P + ++ F G + R
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDAR 269
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 11/216 (5%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR--- 328
GF K GN+ A KLL + G + Y+ LI L K+ K++ +L+E+ R
Sbjct: 258 GFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS-QKFLEAKEVLEEMKTRGVT 316
Query: 329 -DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D S A++ + K E + SG P VV+Y+++IH+ K
Sbjct: 317 PDAFTYS-----ALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLL 371
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG-FCPTYDIYRDM 446
EA + M D+ Y VI L I+ A +++E+G P Y +
Sbjct: 372 EAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTV 431
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
I S L + + + AG D T ++
Sbjct: 432 INGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 467
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 18/202 (8%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDEL---GQ 327
G K G + A +L ++ G +L D Y+ +I L K+ D + LLD + G
Sbjct: 398 GLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKS-DMLVEAQKLLDRMCKAGC 456
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D+ + K G RL++ E L +G P VV YTTLI +K
Sbjct: 457 NPDVVTYTTIIDGLCKCG-RLEE---AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVD 512
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE--AGFCPTYDIYRD 445
EA V+ M + C +L Y ++ I A + ++K+ A P YR
Sbjct: 513 EAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRT 572
Query: 446 MIRIFMASGRLAKCRDVCKEAE 467
++ M+S D+ +EAE
Sbjct: 573 IVNALMSS-------DLVQEAE 587
>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
Length = 760
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 104/273 (38%), Gaps = 36/273 (13%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK 271
P+ ALQ F W ++ + D +++L R+ + ++ A VLE K
Sbjct: 128 PDHALQFFRWVERAGLIQHDRETHMKIIQILGRY----------SMLNHARCIVLEDMPK 177
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G LD ++ LI GK + + + + + ELG
Sbjct: 178 K--------------------GFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKELG--- 214
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ S + A+ KV +R ++ + + F+ G PT Y LI + R A
Sbjct: 215 -VERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLRTA 273
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ +M+ D+ Y +I + + A + F+++K PT Y MI+
Sbjct: 274 VRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKG 333
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ A R+ + +E + G K + T LL
Sbjct: 334 YFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLL 366
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
G ++ G DP VV YT LI + KK EA+ ++ M C +L Y V+
Sbjct: 39 GDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVL 98
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
+ L+ + A K+ E GF P + ++ F G + R
Sbjct: 99 VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDAR 147
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 18/202 (8%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDEL---GQ 327
G K G + A +L ++ G +L D Y+ +I L K+ D + LLD + G
Sbjct: 276 GLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS-DMLVEAQKLLDRMCKAGC 334
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D+ + K G RL++ E L +G P VV YTTLI +K
Sbjct: 335 NPDVVTYTTIIDGLCKCG-RLEE---AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVD 390
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE--AGFCPTYDIYRD 445
EA V+ M + C +L Y ++ I A + ++K+ A P YR
Sbjct: 391 EAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRT 450
Query: 446 MIRIFMASGRLAKCRDVCKEAE 467
++ M+S D+ +EAE
Sbjct: 451 IVNALMSS-------DLVQEAE 465
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 6/166 (3%)
Query: 272 GFVKGGNLKLAWKLL--MVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD 329
GF K GN+ A KLL MVAK G + Y+ LI L K+ K++ +L+E+ +
Sbjct: 136 GFCKRGNVDDARKLLGIMVAK--GMRPNVVTYSALIDGLCKS-QKFLEAKEVLEEM-KAS 191
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ +A++ + K E + SG P VV+Y+++IH+ K EA
Sbjct: 192 GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEA 251
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
+ M D+ Y VI L I+ A +++E+G
Sbjct: 252 QKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%)
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
QKF + + SG P Y+ LIH K EA ++ M S C D+ Y
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 235
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I F + A + ++++ P Y +I G++A+ + + + +
Sbjct: 236 SSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQE 295
Query: 469 AG 470
+G
Sbjct: 296 SG 297
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 121/302 (40%), Gaps = 34/302 (11%)
Query: 200 SFTVRELGHMNLPERALQTFCWA-QKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
+F +RELG+ +A++ F +A ++ +L ++ + L R ++++
Sbjct: 154 TFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVEL-------- 205
Query: 259 SLASKGVLE-ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI----------------- 300
+KGV E A ++G+ GN A+ L+ A D +I
Sbjct: 206 ---AKGVFETALSEGY---GNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVT 259
Query: 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHW 360
Y +I GK ++ V+ + +E+ R+ + + +++ V R + +LF+
Sbjct: 260 YNAVIDACGKGGVEFKRVVEIFEEM-LRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNE 318
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
G D V Y TL+ + + A ++ M L ++ Y + +
Sbjct: 319 MIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGR 378
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ A+ ++++K G Y ++ I+ GR VCKE +G K D T
Sbjct: 379 LEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNA 438
Query: 481 LL 482
LL
Sbjct: 439 LL 440
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 121/302 (40%), Gaps = 34/302 (11%)
Query: 200 SFTVRELGHMNLPERALQTFCWA-QKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
+F +RELG+ +A++ F +A ++ +L ++ + L R ++++
Sbjct: 154 TFLLRELGNRGECWKAIRCFDFALVREGRKNERGKLASAMISTLGRLGKVEL-------- 205
Query: 259 SLASKGVLE-ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI----------------- 300
+KGV E A ++G+ GN A+ L+ A D +I
Sbjct: 206 ---AKGVFETALSEGY---GNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVT 259
Query: 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHW 360
Y +I GK ++ V+ + +E+ R+ + + +++ V R + +LF+
Sbjct: 260 YNAVIDACGKGGVEFKRVVEIFEEM-LRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNE 318
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
G D V Y TL+ + + A ++ M L ++ Y + +
Sbjct: 319 MIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGR 378
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ A+ ++++K G Y ++ I+ GR VCKE +G K D T
Sbjct: 379 LEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNA 438
Query: 481 LL 482
LL
Sbjct: 439 LL 440
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 15/179 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIR------------LQKFGVVES---LFHWFTHS 364
TL+ + + DLN + + K GI L K G ++ +F
Sbjct: 282 TLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCER 341
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P V+ TTLI + E L + W M DL AY ++ F + D+ A
Sbjct: 342 GLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAA 401
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++++ G P Y +I G L ++ +E G LD T L+
Sbjct: 402 NDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALIS 460
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+L G PTVV Y ++I ++ EA + M A C D+ Y +I F
Sbjct: 130 ALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGF 189
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
D+ R + ++ GF P Y +I +GRL D+ +E A
Sbjct: 190 CKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA 243
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 7/219 (3%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLLDEL 325
A + + GN+ +A KL A+ +DP ++ LI G N D + V + L
Sbjct: 251 AMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKAL 310
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
G + +L + T + +G R ++ ++++ T++G P+ Y L+ + +
Sbjct: 311 GVKPNLVIYN---TLLDAMG-RAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARY 366
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-PTYDIYR 444
+AL V M+ + Y ++ + + A F +K +G C P +
Sbjct: 367 AEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFS 426
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+I I+ SG++++ + AGF+ + + L+Q
Sbjct: 427 SLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQ 465
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ + + G P + + TLI + S + EAL + + D+ + ++I
Sbjct: 345 KGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINA 404
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ D A+R F ++K +G P Y +I + G+L K D+ KE E AG
Sbjct: 405 LCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Query: 325 LGQRDDLNLSQQDCTA---IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
L Q D L Q D ++ V + K ++E+++ G P VV + TL+ +
Sbjct: 137 LNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALC 196
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
+ R A+ ++ M +S D + +++ FV I A+R +++ E G PT
Sbjct: 197 RAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKV 256
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+I + GR+ ++ GF+ D+ T
Sbjct: 257 TVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQIT 292
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 51/121 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+++W G P VV YT ++ +A ++ NM+ NC + + IK
Sbjct: 408 VWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLC 467
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ AI+ F ++ +G P Y +++ + R + + K+ E G +L+
Sbjct: 468 GSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLV 527
Query: 477 T 477
T
Sbjct: 528 T 528
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
+ G DP V+ YTT+I++ +L V+ M A C +L + +IK F
Sbjct: 274 NKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSH 333
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
A+ ++ ++ G P Y ++ + L V + E+ G
Sbjct: 334 EALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING 381
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV + L+ + +++ +A+ ++ M + D Y ++ +
Sbjct: 575 IFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYA 634
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
AL D +A YF+KL+ G Y +++ SGR+ V + EM+ + +
Sbjct: 635 ALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTR--EMSAQNIPRN 692
Query: 477 TVVELLQIEKESRIGTI 493
T V + I+ +R G +
Sbjct: 693 TFVYNILIDGWARRGDV 709
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G P+V+ Y LI+ K +AL V ME++ ++ Y ++I F+
Sbjct: 435 VFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFL 494
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
L D + A F + + G P +Y ++I+ F G + + + KE +
Sbjct: 495 KLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQ 545
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN----- 419
G P+ +YT+LIH+ + EAL+ V M+ L Y +V+ F +
Sbjct: 332 GIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQS 391
Query: 420 -DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
++ RA +++E G DIY M+ + G KC V K + GF
Sbjct: 392 CNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGF 444
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 4/170 (2%)
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
K + V +++ G + ++ +K+ F V E + G P VV+Y
Sbjct: 466 KALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIK----DGLKPDVVLY 521
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
+I + A+ +V M+ + +I F ++ RA+ F ++
Sbjct: 522 NNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRR 581
Query: 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+G PT + ++ + ++ K ++ E +AG D+ T ++
Sbjct: 582 SGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMN 631
>gi|449516876|ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01390-like [Cucumis sativus]
Length = 737
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 62/149 (41%)
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
Q T ++ + + + +F G V YT+L+H R + A+ V
Sbjct: 201 QYTYTTMLDIFGEAGRISSMNYVFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKVWK 260
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+A+ C + +Y IK+ + I+ A + K+ ++G P Y ++ + G
Sbjct: 261 EMKANGCHPTVVSYTAYIKILLDNGQINEATATYKKMLQSGLSPNCCTYTILMEYLIGEG 320
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + D+ + + AG DK L+Q
Sbjct: 321 KCKEALDIFSKMQDAGVYPDKAACNILIQ 349
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 36/263 (13%)
Query: 197 GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL-KVPFKLE 255
G+L F +R LG LP+ A++ F A+ P+ ++ LA+ +L
Sbjct: 139 GALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLR 198
Query: 256 NFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
V+ G ++ LL + GR D + + + ELG D++
Sbjct: 199 EMVARCGDGSVDKYTLT-----------SLLRCYCNAGRPDDANDVFQRMSELGW-VDEH 246
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR-DPTVVMYT 374
+L TL+ + ++ + + ++ +G+RL + + L H FT GR D + M+
Sbjct: 247 VLT-TLMVAFSKWGKVDGAVELLGSMEALGMRLSE-KTLSVLVHGFTKQGRVDKAMDMFA 304
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
++ + DL Y V+I+ DI+RA++ F ++K +
Sbjct: 305 KMVSYGF--------------------VVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSS 344
Query: 435 GFCPTYDIYRDMIRIFMASGRLA 457
G P + + +I F G A
Sbjct: 345 GVAPDVRLLKKVIEAFCREGDFA 367
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 108/296 (36%), Gaps = 50/296 (16%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK-------GFVKGGNLKLAW 283
DD +L ++VL +H + V + FV + ++ T K GF++ N+++AW
Sbjct: 753 DDSVLIPIIKVLCKHKKTSVARNV--FVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAW 810
Query: 284 KLLMVAKDGGRMLDPSIYAKLILELGK---------------------NPDKYMLVMTLL 322
L K G D Y LI GK N Y +V++ L
Sbjct: 811 NLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNL 870
Query: 323 ---DELGQRDDL--NLSQQD-----CT------AIMKVGIRLQKFGVVESLFHWFTHSGR 366
+ L + DL NL D CT ++K G RL +F H G
Sbjct: 871 VKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSG-RLDD---AHEMFDGMVHYGC 926
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
P +Y L++ A M DL +Y +++ + + A+
Sbjct: 927 RPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALH 986
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
YF KLK+AG P Y MI S R + + E + G D T L+
Sbjct: 987 YFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLI 1042
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 352 GVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
G V+ H+F +G DP +V Y +I+ ++ EAL++ M+ + DL Y
Sbjct: 979 GRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTY 1038
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I + I A + + +L+ G P Y +IR + SG + K+ +
Sbjct: 1039 NSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMV 1098
Query: 469 AGFKLDKQTVVEL 481
G + T +L
Sbjct: 1099 GGCDPNTGTFAQL 1111
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 10/222 (4%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRD 329
F++GG L+ A L ++ G +L+ Y LI L+ G + + ++ E
Sbjct: 170 FIRGG-LRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSE----- 223
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
L S + +A+M + + V L G P + YT I + K EA
Sbjct: 224 GLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEA 283
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
++ M+ C D+ Y V+I + A+ F+K+K + P Y ++
Sbjct: 284 YRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDK 343
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ-IEKESRI 490
F G L K + E E G+ D T L+ + K RI
Sbjct: 344 FSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRI 385
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M I K +++F+ T G PT++ YTTL+ + +K+ + ++ +
Sbjct: 26 TKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVAD 85
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ D +I F + A++ F K+KE G PT Y +I+ F +GR
Sbjct: 86 NGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGR 142
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 1/219 (0%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
+L A F + G + A K+ K+ G S Y LI G Y M LL+
Sbjct: 94 LLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYE-SMKLLEM 152
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+GQ +++ + + +++ +K ++ H SG P VV Y T+ +
Sbjct: 153 MGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNG 212
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ A ++ M + + ++I + ++ A+R+ ++KE G P ++
Sbjct: 213 ETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFN 272
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+I+ ++ + + E G K D T ++
Sbjct: 273 SLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMN 311
>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L ++ +G +PTV+ +TTLI K M+ + C+ D+ AY V+I +V
Sbjct: 339 LLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYV 398
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
++ +A F ++ P Y MIR +G+ + + KE E G
Sbjct: 399 VARELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMERKG 452
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R K + F+ +G P VV YT +I + ++ +A + M + + ++
Sbjct: 364 RAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKAQEMFEEMLSKELVPNVF 423
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I+ A F +++ G P +Y ++ +GR+A R+V K+
Sbjct: 424 TYNSMIRGLCMAGKFDEACSMFKEMERKGCSPNSVVYITLVSCLRNAGRVADAREVIKQM 483
Query: 467 EMAG 470
G
Sbjct: 484 TETG 487
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V++YT L+ EA V M+ + C+ ++ Y +VI I+RA
Sbjct: 243 EPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHD 302
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486
F+++ + G P + +++R+ + +GR K V + + G D TV IE
Sbjct: 303 VFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPD--TVTYNFLIES 360
Query: 487 ESRIGTI 493
+ G +
Sbjct: 361 HCKDGNL 367
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/295 (19%), Positives = 115/295 (38%), Gaps = 20/295 (6%)
Query: 167 LISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQP 226
+I LA ++ D V +++ + + S +R L A+ F +
Sbjct: 148 MIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDY- 206
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG-----VLEATAKGFVKGGNLKL 281
+ PD + + +L R + + F SL K V +G+ + GN+
Sbjct: 207 NCKPDKIAFSILISILCR--KRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPE 264
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336
A ++ K G M P++Y I+ G+ + + +LD + + + +
Sbjct: 265 AERVFTEMKVAGCM--PNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNN- 321
Query: 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
+++V ++ + V +++ G P V Y LI S + EAL V+ +M
Sbjct: 322 ----LLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSM 377
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
C + + + L D++ A R ++K+KE Y ++R+F+
Sbjct: 378 VKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFV 432
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 333 LSQQDCTAIM----KVGIRLQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKK 385
+S+ DCTA + V L + G V+ + ++ G P + Y L+ + ++
Sbjct: 318 MSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAER 377
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
+A ++ M ++CL D+ + +I +A+ F ++ E G CP Y
Sbjct: 378 WEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSS 437
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFK 472
+I +G++ + ++ E GF
Sbjct: 438 VIEGLAKTGKMEQSLELLNEMGSKGFN 464
>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 293 GRMLDPSI--YAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQQDCTAIMKVGIR 347
G+ + P++ YA LI L N ++ +LLDE+ G R DL + A K G
Sbjct: 245 GKGVRPNLVTYACLIQGL-CNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKV 303
Query: 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
+Q +S+ + +G P V Y +LIH + K EA+ V M + L D+
Sbjct: 304 MQ----AKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVV 359
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ +I + +I++A+ ++ + GF P + +I F +GR
Sbjct: 360 FTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGR 407
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
F V+ ++F G +PTV+ TTLI+ + +A+ + +ME D+ Y V
Sbjct: 132 FSVLGTMFKL----GLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGV 187
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I D A+ + K++E + P +Y ++ G +++ ++C E G
Sbjct: 188 LINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKG 247
Query: 471 FKLDKQTVVELLQ 483
+ + T L+Q
Sbjct: 248 VRPNLVTYACLIQ 260
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K LF G V +YT +I + +A ++ NME + CL + Y
Sbjct: 477 KLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYN 536
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGF 436
V ++ + +I+R+I+Y + +++ GF
Sbjct: 537 VFVQGLLTKKEIARSIKYLTIMRDKGF 563
>gi|357436523|ref|XP_003588537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477585|gb|AES58788.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 653
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL-TVVWNME 397
T ++ + I K +F G P+++ YT+L+H+ L+ +KC +++ ++V +E
Sbjct: 78 TKLLNILIVCGKPQAANVIFKKLIEEGHQPSLITYTSLLHA-LTMQKCFKSIHSLVSQVE 136
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ Y VI F ++ A + K+KE+GF P+ Y ++I+ + G+
Sbjct: 137 EKQMKTNSIFYNAVINAFAESGNMEDAKKTVQKMKESGFRPSTGTYSNLIKGYGIVGK 194
>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 90/410 (21%), Positives = 152/410 (37%), Gaps = 58/410 (14%)
Query: 115 PQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLASSRASICKQVYKNPSFLISLARDI 174
P KP L++ P LPH+ +P + +P+ R LA S +++ F++ R
Sbjct: 54 PFKPFDLHKWDPQQ-NLPHQPQPSKPQSPRSRHSLALS-----QRLSPIARFILDAFRKN 107
Query: 175 KGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQP---HLFPD 231
+ + V E+ LR+ + L N P+ A + F WA KQ H F
Sbjct: 108 RNQWGPEVVTELCK-----LRRVTPDLVAEVLKVENNPQLATKFFHWAGKQKGFKHTFAS 162
Query: 232 DRLLASTV----------------------------EVLARHHE-----LKVPFKLENFV 258
A + E+L R H L+V + + V
Sbjct: 163 YNAFAYNLNRSNFFRAADQLPELMEAQGKPPTEKQFEILIRMHSDANRGLRVYYVYQKMV 222
Query: 259 SLASKG---VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
K + +K G+L LA + + G + + Y LI L K
Sbjct: 223 KFGVKPRVFLYNRIMDSLIKTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGR-- 280
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVM 372
+ +++ LG+ + NL + D A + L G +++ + RD P V+
Sbjct: 281 --IEEMMEVLGRMRE-NLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMA 337
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y TL+ + + + V M+ L D Y ++++ FVA I A L
Sbjct: 338 YVTLVTALCKGGRVDKGYEVFKEMKGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLV 397
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
++G+ IY +I F R+ K + + G + D +TV LL
Sbjct: 398 DSGYRADLRIYNSLIEGFCNVKRVDKAHKLFQVTVQEGLERDFKTVNPLL 447
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336
G + A+ ++ G + D S Y+K+I L N K L E+ +R+ +
Sbjct: 101 GKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLC-NASKVEKAFQLFQEM-KRNGITPDVY 158
Query: 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVV 393
T ++ R K G++E +WF +D P VV YT LIH+ L +K A +
Sbjct: 159 TYTTLLD---RFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIF 215
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF-CPTYDIY 443
M ++ C+ ++ Y +I + +A + ++++K P DIY
Sbjct: 216 EMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIY 266
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++ K + +F G P V Y++LI +K+ AL V+ M ++C ++
Sbjct: 326 KVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVV 385
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
Y ++ + A R ++E G P Y MI F +GR+ +C ++
Sbjct: 386 IYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLEL 441
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV+YT ++ K EA ++ ME C ++ Y +I F + R +
Sbjct: 382 PNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLEL 441
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ G P + YR +I A+G L
Sbjct: 442 LQLMTSKGCAPNFITYRVLINHCCAAGLL 470
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P V YT LI++ K E V+++ME C+ +L Y VVI D+ A+
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ-IEK 486
+ G P IY +I F R + + + E G K D L+ K
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVK 349
Query: 487 ESRIG 491
+S IG
Sbjct: 350 QSDIG 354
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 16/269 (5%)
Query: 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV-SLASKGV 265
GH+ R L + L P+D + ++ L + +++ + + F+ SL KGV
Sbjct: 296 GHLQCAFRLLHLM----ETNGLVPNDWTFSVLIDALCKREKVE---EAQLFLGSLVKKGV 348
Query: 266 ------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
+ G K G + A +L+ G + D Y+ LI L + K +
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQ--KKLSQA 406
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
TL+ E + S T I+ +R + +F +G +P +V YT + S
Sbjct: 407 TLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRS 466
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
E + +A +++ M +L Y +I+ + L +S+A F + G+ P
Sbjct: 467 YCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPN 526
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
D Y ++R+ + D+ K A+M
Sbjct: 527 EDSYTVLLRLVVKKSSSDNSVDIWKIADM 555
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 20/254 (7%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLAS--------TVEVLARHHELK--VPFKLENFVSLA 261
P R L T A + +FPD LAS T L + L +P ++ SL
Sbjct: 40 PLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLL 99
Query: 262 SKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
G+ + G+ + G L A ++ ++ G + Y L+ L
Sbjct: 100 HAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGL---LGAG 156
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYT 374
M+ + +G R D A M G+ + E L +G +P +V+Y
Sbjct: 157 MVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYN 216
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
LI + + AL V M+ + C ++ Y +I + RA+ FS++ EA
Sbjct: 217 ALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEA 276
Query: 435 GFCPTYDIYRDMIR 448
G P Y +I+
Sbjct: 277 GLEPNVVTYTALIQ 290
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 107/293 (36%), Gaps = 31/293 (10%)
Query: 203 VRELGHMNL-PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLA 261
V L +NL P+ AL W + P+ + AS V +L ++P+++ L
Sbjct: 30 VSSLFSLNLDPQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQ---EIPYEVPKITILM 86
Query: 262 SKGVLEATAKGFV--------KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GK 310
K FV KG + ++ +KL P Y L+ L G
Sbjct: 87 IKSCNSVRDALFVVDFCRTMRKGDSFEIKYKL-----------TPKCYNNLLSSLARFGL 135
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
+ L +L++L D + K+G ++ + W +G DP
Sbjct: 136 VEEMKRLYTEMLEDLVSPDIYTFNTL-VNGYCKLGYVVE----AKQYVTWLIQAGCDPDY 190
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
YT+ I K+ A V M + C + +Y +I I A+ K
Sbjct: 191 FTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVK 250
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+K+ CP Y +I SG+ ++ ++ K+ +G K D L+Q
Sbjct: 251 MKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQ 303
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F T +G V YT LI+ KK EAL+++ M+ NC ++ Y V+I
Sbjct: 212 VFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALC 271
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
S A+ F ++ E+G P +Y +I+ F + L
Sbjct: 272 GSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTL 311
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF + SG P MYT LI S S EA ++ +M + + ++ Y +IK F
Sbjct: 281 NLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGF 340
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
N + +A+ SK+ E P Y +I +SG ++ +C +KL K
Sbjct: 341 CKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSG-ISLSEKICNGLLRCYYKLQK 398
>gi|356520039|ref|XP_003528673.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 585
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 47/236 (19%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML--VMTLLDELGQR 328
KG + G+L ++LL + ++ G L+ IY LI K+ D + + +D LG
Sbjct: 209 KGRCEAGDLMKGFRLLAMLEEFGFSLNVVIYTTLIYGCCKSGDVRLAKKLFCTMDRLG-- 266
Query: 329 DDLNLSQQDCTAIM----KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI----HSR 380
L + C +M K G++ + F + E++ SG P Y +I ++R
Sbjct: 267 --LVANHHSCGVLMNGFFKQGLQREGFXMYENM----KPSGIVPNAYAYNCVISEYCNAR 320
Query: 381 LSEKK------------------------CR-----EALTVVWNMEASNCLFDLPAYRVV 411
+ +K CR EA+ +V + ++ Y ++
Sbjct: 321 MVDKALNVFAEMREKGIAYGVITYNXGGLCRGKKFGEAVKIVHQVNKVGLSPNIVTYNIL 380
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
I F + I A+R F++LK G PT Y +I + LA D+ KE E
Sbjct: 381 INGFCDVGKIDTAVRLFNQLKSNGLSPTLVTYNTLIAGYSKVENLAGALDLVKEME 436
>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 426
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ +L +R + +++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSKL-KRSGITPDLVAYNSMINVFGKARLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P V Y+TL+ + K+ REAL+V M CL DL ++I ++
Sbjct: 101 LISEMRVAGVMPNTVSYSTLLTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L+ A + F +++ G P Y ++R++
Sbjct: 161 QLDMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+VV YT+L+ + EK + ++ M C ++ Y +++ A
Sbjct: 300 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 359
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ F KLKE G P Y +I I +GRL V +E G
Sbjct: 360 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 405
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 95/250 (38%), Gaps = 40/250 (16%)
Query: 257 FVSLASKGVLEATAKGFV-----KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311
F L SK VL A + G + + G ++LL V ++ G + IY LI KN
Sbjct: 147 FNVLKSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKN 206
Query: 312 PDKYMLVMTL---LDELGQRDDLNLSQQDCTAIMKVGIRLQKF----------------- 351
D ML L +D LG + + K G++ + F
Sbjct: 207 GD-VMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYA 265
Query: 352 -----------GVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
G+V+ F F G V+ Y LI KK EA+ +V +
Sbjct: 266 YNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVN 325
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
++ Y ++I F + + A+R F++LK +G PT Y +I + LA
Sbjct: 326 KVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLA 385
Query: 458 KCRDVCKEAE 467
D+ KE E
Sbjct: 386 GALDLVKEME 395
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ SG PT+V Y TLI + AL +V ME Y ++I F
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFA 414
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
LN +A S ++++G P Y +I +G +
Sbjct: 415 RLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNM 454
>gi|410129734|dbj|BAM64814.1| bvCRP-1 [Beta vulgaris]
Length = 517
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 72/358 (20%), Positives = 143/358 (39%), Gaps = 33/358 (9%)
Query: 153 RASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLP 212
R + K +YK + + + D+ G+ +++ E+ ++ LS T R +G M
Sbjct: 159 RGFLRKGLYKLANRALRVMEDL-GMCKNQETLEIF--LDYYVSGRRLSDTWRIIGDMKRK 215
Query: 213 ERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF--KLENFV--SLASKGVLEA 268
L +F ++ + L+ D+ + +E++ E+ VP ++ N + + G L+
Sbjct: 216 GYQLNSFAYS-RVIELYRDNGMWKKAMEIVGEISEMGVPMDRRIYNSIIDTFGKYGELDE 274
Query: 269 TAKGFVK----------------------GGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL 306
K VK G+ A L +D G DP I+ LI
Sbjct: 275 ALKVLVKMRREEIVPDIMTWNSLIKWHCKAGDHMKALDLFTEMQDQGLYPDPKIFIILIS 334
Query: 307 ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR 366
+LG N K+ L+ +++ R S ++ + + KF E G
Sbjct: 335 QLG-NLGKWDLLRENFEKMKYRGHKK-SGAVYAVLVDIYGQYGKFQGAEDCISALRAEGV 392
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+ +Y+ + ++ + C E + V+ MEA +L ++I F A+
Sbjct: 393 QMSSNIYSVMANAYAQQGLCEETVKVLQVMEAEGIEPNLIMLNILINAFGIAGRHLEALS 452
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ + E G P Y +++ + + + K ++ + E+AG D++ E+LQI
Sbjct: 453 IYDHIIENGINPDIVTYTTLMKALIRAKKFTKVPELYQHMELAGCTPDRKA-REMLQI 509
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ H G P V Y TLIH K REA + NM + L DL Y +++ F
Sbjct: 395 LFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFC 454
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ +A R F ++ P +Y ++ SG R + E + G +
Sbjct: 455 KQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQ 510
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P V +YTT+I+ E EAL NMEA C D +Y V+I+ +
Sbjct: 500 LFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLL 559
Query: 417 ALNDISRAIRYFSKLKEAGF 436
D SRA+ ++++ GF
Sbjct: 560 QHKDESRALLLVGEMRDRGF 579
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 1/183 (0%)
Query: 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHW 360
+AKL+ + K Y +V++L ++ + L+ + + M +LQ+ + S+
Sbjct: 95 FAKLLSAIVKMGQYYDVVISLSKQM-ELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAK 153
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
G PT+V +TTLI+ + +A+ + +M A C D+ Y +I + +
Sbjct: 154 VIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGE 213
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ A K++EAG P Y +I + + D+ + G D T
Sbjct: 214 TAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTS 273
Query: 481 LLQ 483
L+Q
Sbjct: 274 LIQ 276
>gi|222618027|gb|EEE54159.1| hypothetical protein OsJ_00969 [Oryza sativa Japonica Group]
Length = 610
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 1/202 (0%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
K + G L+ AW+++ + G D Y L KN D+ L+ E+ Q+
Sbjct: 233 KAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKN-DETWRAEELVVEMAQQAG 291
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L S++ I+ R + G SG P V+++ TL+ L
Sbjct: 292 LRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVD 351
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ ME D+ Y + ++ +++ ++ F K+ EAG P +Y + + +
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411
Query: 451 MASGRLAKCRDVCKEAEMAGFK 472
+ + + K ++ ++ G +
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVR 433
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +PT+V Y T++ + +EA M+ C D+ Y VI F D+ +A
Sbjct: 238 GIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKA 297
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIF 450
R F ++ + G P Y +I++
Sbjct: 298 KRVFHEMVKEGVVPNVATYNALIQVL 323
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 348 LQKFGVV------ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN- 400
+ FGV + +FH G P V Y LI + A+ V M
Sbjct: 285 IHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGV 344
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
C+ ++ Y VVI+ + D+ RA+ + ++ E G Y +IR F +G + K
Sbjct: 345 CVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKAL 404
Query: 461 DV 462
+V
Sbjct: 405 EV 406
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 17/222 (7%)
Query: 238 TVEVLARHHEL--KVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAWKLLMVA 289
T +LA + L + P L + +G+ KG+ + +K AW+ +
Sbjct: 210 TYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEM 269
Query: 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ 349
K +D Y +I G D + + + N++ + A+++V L
Sbjct: 270 KKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYN--ALIQV---LC 324
Query: 350 KFGVVESLFHWFTHSGRD----PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K VE+ F R+ P VV Y +I AL + M +
Sbjct: 325 KKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACV 384
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
Y VVI+ F ++ +A+ F K+ + P D Y +I
Sbjct: 385 QTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLI 426
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAYRVVIKLFVALNDISR 423
G P VV YT L+ + + EA VV M E + + D AY ++I + +
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A R +++++AG +Y MI GR+ + + V +E E G + DK + L+
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLI 401
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+V+ YT+LI + EK + ++ M + C ++ Y +V+ A
Sbjct: 294 GFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEA 353
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ F K++ G P Y +I I +GRL V + M G +
Sbjct: 354 LDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVR 401
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS EA+ V M+ + C D
Sbjct: 361 RAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRV 420
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL-AKCRDVCKE 465
Y +I + + A+ + +++ AG P Y +I +G L A R C
Sbjct: 421 TYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFC-- 478
Query: 466 AEMAG 470
EM G
Sbjct: 479 -EMVG 482
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G +P V+ TTLI + E L + W M DL AY ++ F
Sbjct: 206 MFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFC 265
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ D+ A ++++ G P Y +I G L ++ +E G LD
Sbjct: 266 RVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDV 325
Query: 477 TVVELLQ 483
T L+
Sbjct: 326 TYTALIS 332
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
++ W G P+ V Y LI S + A +++ +ME C ++ Y +I F
Sbjct: 316 MWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFS 375
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
D+ AI ++ + +G P +Y +M+ +F
Sbjct: 376 KAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVF 409
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
G S+++ + SG P VV+YT ++ + +A +++ M NC + +
Sbjct: 380 LGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNT 439
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I+ + RA+ F +++ G P Y ++I G + E + G
Sbjct: 440 LIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHG 499
Query: 471 FKLD---KQTVVELLQIEKESR 489
+L TVV L + SR
Sbjct: 500 IELSLVTYNTVVSGLCQTRMSR 521
>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g17670-like [Glycine max]
Length = 456
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 368 PTVVMYTTLIHSRLSEKKC--REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
P +V YT LI + + K REA+ +V + D Y ++K + L+ S AI
Sbjct: 219 PDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKGYCVLSRGSEAI 278
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++K+KE G P Y +I SGR+ + R + + G+ D+ T L+
Sbjct: 279 EVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSLMN 336
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 12/193 (6%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKL-----ILELGKNPDKYMLVMTLLDELGQRD 329
K NL+ A +L+ V + G LD +Y + +L G + + V + E G
Sbjct: 235 KNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKGYCVLSRG---SEAIEVYNKMKEEGVEP 291
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
DL + K G + L G P V YT+L++ + A
Sbjct: 292 DLVTYNTLIFGLSKSG----RVTEARKLLRVMAEKGYFPDEVTYTSLMNGLCRKGDALGA 347
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L ++ MEA C + Y ++ + +A++++ ++ G Y +R
Sbjct: 348 LALLGEMEAKGCSPNACTYNTLLHGLCKARLVEKAVKFYQVIRAGGLKLDTASYGTFVRA 407
Query: 450 FMASGRLAKCRDV 462
GR+A+ +V
Sbjct: 408 LCRDGRIAEAYEV 420
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 22/205 (10%)
Query: 256 NFVSLASKGVLEATAKGFV--------------KGGNLKLAWKLLMVAKDGGRMLDPSIY 301
+ + LA K E A G V G + A+ ++ G + D S Y
Sbjct: 427 HLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 486
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361
+K++ L N K L L +E+ +R L T ++ K G++E WF
Sbjct: 487 SKVLGYLC-NASKMELAFLLFEEM-KRGGLVADVYTYTIMVD---SFCKAGLIEQARKWF 541
Query: 362 TH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
G P VV YT LIH+ L KK A + M + CL ++ Y +I
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIY 443
+ +A + F ++ + P D+Y
Sbjct: 602 GQMEKACQIFERMCGSKDVPDVDMY 626
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV+YT +I K EA ++ ME C ++ Y +I F + I +
Sbjct: 743 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLEL 802
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
++ G P Y YR +I +G L ++ +E
Sbjct: 803 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 840
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 102/269 (37%), Gaps = 13/269 (4%)
Query: 192 RFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVP 251
+F K S S + L + P + F WA +Q + + V+++ R + KVP
Sbjct: 125 QFREKLSESLVIEVLRLIERPSAVISFFVWAGRQIGYKHTSPVYNALVDLIVRDDDEKVP 184
Query: 252 FKLENFVSLASKGV----LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
+L + K V L + + + G+ +A + L KD S Y LI
Sbjct: 185 EELLQQIRDDDKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQA 244
Query: 308 LGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365
K D LV + R D + ++ KVG + ++E+
Sbjct: 245 FLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTLMET-------EN 297
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
P V YT LI EA+ + M A++CL ++ Y ++ + + R
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCK 357
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
R + + G P+ I+ ++ + SG
Sbjct: 358 RVLNMMMMEGCYPSPKIFNSLVHAYCTSG 386
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 359 HWFTHSGRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
HWF + + ++Y +I++ +A +V ME + Y ++ +
Sbjct: 4 HWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGY 63
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ D + + F + KE G P+ Y +I ++ G+++K +V KE E AG K +
Sbjct: 64 TMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNM 123
Query: 476 QTVVELLQ 483
+T L+
Sbjct: 124 KTYSMLIN 131
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV Y LI + ++K +A ++ M + + Y ++ +
Sbjct: 215 VFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYA 274
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+L D +A YF+KL++ G Y +++ SGR+ V K EM+ + +
Sbjct: 275 SLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK--EMSAQNIPRN 332
Query: 477 TVVELLQIEKESRIGTI 493
T + + I+ +R G +
Sbjct: 333 TFIYNILIDGWARRGDV 349
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F+ G P+++ YTTL+ + +K L+++ ++ + D + +I
Sbjct: 340 SIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINAS 399
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ +A++ F K+KE+G PT + +I+ + G+L
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKL 440
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 12/213 (5%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDKYMLVMTLLDELGQRDDLN 332
GNL A K+ K+ G S + LI GK +L M L DE+ Q +D
Sbjct: 403 GNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPND-- 460
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI--HSRLSEKKCREAL 390
+ C +++ +K ++ + G P V + TL +SR+ C
Sbjct: 461 ---RTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGST-CTAED 516
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ M + ++ ++ + + A+R+F ++KE G P ++ +I+ F
Sbjct: 517 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + +V E G K D T L+
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
>gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 875
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PT V + T+IH ++ + E ++ ME C D Y ++I + NDI+ A Y
Sbjct: 363 PTTVTFNTMIHICGNQGQLEEVALLMQKMEELRCPPDTRTYNILIFIHAKHNDINMAASY 422
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
F ++K+ P YR ++ F + ++ E + G ++D+ T L ++ E
Sbjct: 423 FKRMKKDQLQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIEIDEYTQSALTRMYIE 482
Query: 488 S 488
+
Sbjct: 483 A 483
>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
Length = 425
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 14/216 (6%)
Query: 292 GGRMLDPSIYAKLILELGKNPDKYML--VMTLLDELG------------QRDDLNLSQQD 337
GR+ + K +L+ PD Y L ++T + G ++ + ++
Sbjct: 167 AGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVS 226
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
A++ + K G+ G P + + TLI+ K EA V+ M
Sbjct: 227 FNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR 286
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
++ D+ Y +I+ F ++ +A F +++AG Y +I + +GR
Sbjct: 287 SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQ 346
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RD+ + + G D T L Q+ + ++ I
Sbjct: 347 DARDIYFDMKKKGILPDAITATVLQQLAGKCKLSGI 382
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ ++ G + LF+ H G P +V Y TLI + REA + NM + L DL
Sbjct: 197 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 256
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +++ F +++A R F ++ P +Y +I S L + R + E
Sbjct: 257 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 316
Query: 467 EMAGFK 472
+ G +
Sbjct: 317 FVQGLQ 322
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 4/158 (2%)
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
G + D++ + K+G + G LF +G P VV Y+T+I S +++
Sbjct: 5 GYQPDVHTYTTIINGLCKIGETVAAAG----LFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
EAL + M+A ++ Y +I+ + A +++ P +
Sbjct: 61 VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+I IF G + + R V K G + + T L+
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMN 158
>gi|326509863|dbj|BAJ87147.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 757
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
Query: 297 DPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
D + A L+ G+ P + + + L+ ELG + + A++K + + +
Sbjct: 181 DEATVAALVAAYGRAGIPQEAVKLFRLMPELG----ITRTALSYNAVLKAILCRGREAMA 236
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+++ G PT+ Y TLI KK A+ V +M+ D+ Y ++
Sbjct: 237 RRVYNAMIADGVAPTLSTYNTLIWGFGLCKKMESAVRVFGDMKGHGVAPDVTTYNTLLNA 296
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+V D+ A + F ++ EAG Y MI+ ++ + ++ + + E G +L
Sbjct: 297 WVRKGDLESARKVFDEMPEAGLERNSISYNVMIKGYVDANKVEEALGLFTEMGEKGLRLT 356
Query: 475 KQTVVELL 482
++T L+
Sbjct: 357 EKTFAVLM 364
>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
Length = 341
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G PT V YT +I + L K +A V+ M + C FDL Y ++I F
Sbjct: 135 LFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFA 194
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ +A+ F ++ G P Y ++ F +G++ + + E + G
Sbjct: 195 KAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGI 249
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAYRVVIKLFVALNDISR 423
G P VV YT L+ + + EA VV M E + + D AY ++I + +
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A R +++++AG +Y MI GR+ + + V +E E G + DK + L+
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLI 401
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
++ W G P+ V Y LI S + A +++ +ME C ++ Y +I F
Sbjct: 293 MWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFS 352
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
D+ AI ++ + +G P +Y +M+ +F
Sbjct: 353 KAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVF 386
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
G S+++ + SG P VV+YT ++ + +A +++ M NC + +
Sbjct: 357 LGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNT 416
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I+ + RA+ F +++ G P Y ++I G + E + G
Sbjct: 417 LIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHG 476
Query: 471 FKLD---KQTVVELLQIEKESR 489
+L TVV L + SR
Sbjct: 477 IELSLVTYNTVVSGLCQTRMSR 498
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 8/205 (3%)
Query: 249 KVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
+ P LE + +G+ +GF + G ++ AW+ + K +D Y
Sbjct: 208 RTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYT 267
Query: 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362
++ G + + DE+ R+ + S A ++V + +F
Sbjct: 268 TVVHGFGV-AGEIKRTRNVFDEM-IREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMV 325
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
G +P V Y LI K ++ ME C + Y ++I+ + +++
Sbjct: 326 RKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVE 385
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMI 447
+A+ F K+ P D Y +I
Sbjct: 386 KALGLFEKMGTGDCLPNLDTYNILI 410
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P + Y T++ + R+A M+ NC D+ Y V+ F +I R
Sbjct: 223 GINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRT 282
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRI 449
F ++ G P+ Y I++
Sbjct: 283 RNVFDEMIREGVLPSVATYNAFIQV 307
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 46/253 (18%)
Query: 257 FVSLASKGVLEATA-----KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI------ 305
F L SK VL+A + KG + G ++LL + ++ G + IY LI
Sbjct: 147 FNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKY 206
Query: 306 ---------------LELGKNPDKYMLVMTLLDELG-QRDDLNLSQQDCTAIMKVGIRLQ 349
L L NP Y ++M + G QR+ + + + + GI
Sbjct: 207 GNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYEN----MKRSGIVPN 262
Query: 350 KF------------GVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ G+V+ F F G V+ Y LI KK EA+ +V
Sbjct: 263 AYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVH 322
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ ++ Y ++I F + + A+R F++LK +G PT Y +I +
Sbjct: 323 KVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVE 382
Query: 455 RLAKCRDVCKEAE 467
LA D+ KE E
Sbjct: 383 NLAGALDLVKEME 395
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ SG PT+V Y TLI + AL +V ME Y ++I F
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
LN +A S ++++G P Y +I G +
Sbjct: 415 RLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNM 454
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
+ G PTVV Y T+IH A M A L DL Y +I + ++
Sbjct: 330 NEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLK 389
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A+ F LK AG P+ Y ++ + G L + R +E G + D T L+
Sbjct: 390 EALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILM 449
Query: 483 QIEKESR 489
++ R
Sbjct: 450 NGSRKVR 456
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 79/219 (36%), Gaps = 22/219 (10%)
Query: 257 FVSLASKGVL------EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
FV + + G+L + G+ K GNLK A L K G L PS+ IL
Sbjct: 360 FVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAG--LAPSVLTYNILL--- 414
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDC-------TAIMKVGIRLQKFGVVESLFHWFTH 363
D Y + L E +R + +Q C T +M +++ +V F
Sbjct: 415 --DGYCRLGDL--EEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLS 470
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
G P Y T I + L EA + M + D Y + + ++
Sbjct: 471 KGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKD 530
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
A + K+ G P Y +I GRL + RD+
Sbjct: 531 AYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDI 569
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 35/91 (38%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P + YT LIH+ + REA + M S Y V I + ++ A
Sbjct: 542 GLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSA 601
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+F K+ E G P Y +I GR
Sbjct: 602 YGWFQKMLEEGVRPNEVTYNVLIHALCRMGR 632
>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 12/211 (5%)
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
LA +LEA KGG A+K+ + G D Y+ I + D + +
Sbjct: 256 LAYNSLLEA----LCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYR 311
Query: 320 TLLDELGQRDDL--NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
L E +R +L N+ +C ++K + Q + G P Y +
Sbjct: 312 VL--ERTKRKNLLPNVFTYNC--VIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQ 367
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ AL +V M+ C+ D Y +V+KL V + RA + + + GF
Sbjct: 368 AYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFY 427
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
P+ Y MI F + K + CK EM
Sbjct: 428 PSVSTYAVMIHGFCK--KKWKLEEACKYFEM 456
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH SG+ P +V Y L+ + +A+ ++ +E SN D+ +Y +VI
Sbjct: 410 ALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGM 469
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ ++ A FS L G P Y MI G LA+ + +E G D
Sbjct: 470 CRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDD 529
Query: 476 QT 477
T
Sbjct: 530 CT 531
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 39/99 (39%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G LF G P V Y TLIH R A+ ++ +M NC ++ Y
Sbjct: 159 KIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYN 218
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+I ++ A+ FS++ G P Y +I
Sbjct: 219 TIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIH 257
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 49/131 (37%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++Q+ LF P +V Y TLIH + R+A+ + M AS + DL
Sbjct: 366 KIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLV 425
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
YR+++ + +A+ ++ + P Y +I G L D+
Sbjct: 426 TYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSL 485
Query: 467 EMAGFKLDKQT 477
G D T
Sbjct: 486 SSKGLHPDVWT 496
>gi|225456224|ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Vitis vinifera]
Length = 432
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 107/269 (39%), Gaps = 22/269 (8%)
Query: 213 ERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG----VLEA 268
E+A++ + W + Q ++ VLAR + LKV + E +A KG V A
Sbjct: 101 EKAMEFYSWVETQFGFSHNEMTCREMGCVLARGNRLKVLW--EFLHEMARKGGNGVVTTA 158
Query: 269 TAKGFVKG-GNLKLAWKLLMVAKDGGRM-LDPSIYA--KLILELGK--NPDKYMLVMTLL 322
T +K G LA + L + P +YA +I L + N K ++ +
Sbjct: 159 TITCLMKVLGEEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQM 218
Query: 323 DELGQR---DDLN---LSQQDCTAIMKVGIR---LQKFGVVESLFHWFTHSGRDPTVVMY 373
+ G R D L C ++ G R ++ LF G P VV Y
Sbjct: 219 ELPGFRCPPDSFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLFKGFVPDVVTY 278
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
LI + AL + +M C+ + Y I+ + A+N+I +A+ K+KE
Sbjct: 279 NCLIDGCCKTYRIERALELFDDMNKRGCVPNRVTYNSFIRYYSAVNEIDKAVDMLCKMKE 338
Query: 434 AGF-CPTYDIYRDMIRIFMASGRLAKCRD 461
PT Y +I +GR+ + RD
Sbjct: 339 MNHGIPTTSSYTPIIHALCETGRILEARD 367
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV Y TLI+ + ++ ME + Y VV+K +V + A
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNE 409
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
K++E+GF P + +I + +GRL++ + E G K++ T+ +L
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILH 465
>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L H G P V Y+TL+ + +K EAL+V M +NC DL ++I ++
Sbjct: 261 LVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYG 320
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L+ + A R F +++ G P Y +++++
Sbjct: 321 QLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVY 354
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 12/186 (6%)
Query: 298 PSIYA-KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
PS++A ++L K+ L L DE+ QR T I G K G+ +
Sbjct: 132 PSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFG----KAGMFDE 187
Query: 357 LFHWFTHSGRDPT---VVMYTTLIHSRLSEKKC--REALTVVWNMEASNCLFDLPAYRVV 411
W +D +V+Y+ LI LS K C +A+++ ++ S DL AY +
Sbjct: 188 SLFWLQQMEQDRVSGDLVLYSNLIE--LSRKLCDYSKAISIFMRLKRSGITPDLVAYNSM 245
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
I +F A +++E G P Y ++ +++ + + + V E A
Sbjct: 246 INVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANC 305
Query: 472 KLDKQT 477
LD T
Sbjct: 306 SLDLMT 311
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K + A L+ ++ G + D Y+ L+ +N +K++ +++ E+ + + +
Sbjct: 249 FGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVEN-EKFVEALSVFAEMNEAN-CS 306
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
L C ++ V +L + LF G +P VV Y TL+ + EA+ +
Sbjct: 307 LDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHL 366
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M+ ++ Y +IK++ + +A ++++ G P Y +I I+
Sbjct: 367 FRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGK 426
Query: 453 SGRLAKCRDVCKEAEMAGFKLDK---QTVV 479
+G+L + + ++ +G ++D+ QT++
Sbjct: 427 AGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 456
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 55/282 (19%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK 271
PE AL+ F +QP + +E++ H + + L + +++A
Sbjct: 81 PEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVG---DVAQVFDLMQRQIIKANVG 137
Query: 272 GF--------VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLD 323
F V+GG L+ A L V K+ G +L+ Y LI Y LV + D
Sbjct: 138 TFCTVFGAVGVEGG-LRSAPVALPVMKEAGIVLNAYTYNGLI---------YFLVKSGFD 187
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
M V + GVV PTV Y+ L+ L+
Sbjct: 188 R---------------EAMDVYKAMAADGVV-------------PTVRTYSVLM---LAF 216
Query: 384 KKCREALTVVW---NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
K R+A TVV MEA ++ +Y + I++ + A R K++E G P
Sbjct: 217 GKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDV 276
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I+I +GRLA +DV + + + K D+ T + LL
Sbjct: 277 VTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLL 318
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 330 DLNLSQQDCT-AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
++NL DCT + G+ R K V L + P ++ Y T++ +
Sbjct: 549 EMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVN 608
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL ++++M + C+ DL +Y V+ V + + A F ++K+ P Y ++
Sbjct: 609 YALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKV-LAPDYATVCTIL 667
Query: 448 RIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQ 483
F+ SG + + +E + K+D+ +V L++
Sbjct: 668 PSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLME 704
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S F T G +P ++ Y LIH + EAL++ +ME +L Y +I
Sbjct: 962 SYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 1021
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ A + + +L G+ P Y +IR + SG
Sbjct: 1022 GKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 15/240 (6%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EATAKGFVKGGNLKLAWK 284
+D +++ T V A +V L+ F + KG++ + GF+K A +
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALE 402
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
L G + + I GK+ + K + L+ G D+ +
Sbjct: 403 LFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLA 462
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K G + G+ + +FH G P + YT +I EA+ + M + C
Sbjct: 463 KTG----RLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCA 518
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ A +I + + A + F +LKE PT Y ++ GR K ++V
Sbjct: 519 PDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLA---GLGREGKVKEV 575
>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
Length = 975
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 36/263 (13%)
Query: 197 GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL-KVPFKLE 255
G+L F +R LG LP+ A++ F A+ P+ ++ LA+ +L
Sbjct: 139 GALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLR 198
Query: 256 NFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
V+ G ++ LL + GR D + + + ELG D++
Sbjct: 199 EMVARCGDGSVDKYT-----------LTSLLRCYCNAGRPDDANDVFQRMSELGW-VDEH 246
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR-DPTVVMYT 374
+L TL+ + ++ + + ++ +G+RL + + L H FT GR D + M+
Sbjct: 247 VLT-TLMVAFSKWGKVDGAVELLGSMEALGMRLSE-KTLSVLVHGFTKQGRVDKAMDMFA 304
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
++ + DL Y V+I+ DI+RA++ F ++K +
Sbjct: 305 KMVSYGF--------------------VVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSS 344
Query: 435 GFCPTYDIYRDMIRIFMASGRLA 457
G P + + +I F G A
Sbjct: 345 GVAPDVRLLKKVIEAFCREGDFA 367
>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 12/211 (5%)
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
LA +LEA KGG A+K+ + G D Y+ I + D + +
Sbjct: 256 LAYNSLLEA----LCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYR 311
Query: 320 TLLDELGQRDDL--NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
L E +R +L N+ +C ++K + Q + G P Y +
Sbjct: 312 VL--ERTKRKNLLPNVFTYNC--VIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQ 367
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ AL +V M+ C+ D Y +V+KL V + RA + + + GF
Sbjct: 368 AYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFY 427
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
P+ Y MI F + K + CK EM
Sbjct: 428 PSVSTYAVMIHGFCK--KKWKLEEACKYFEM 456
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
+S F H +P V++YT+L+H EA +V M+ + ++ Y +VI
Sbjct: 237 AQSFFDNLKHKF-EPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVID 295
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
I+RA F+++ +AG P + ++IR+ + +GR K V
Sbjct: 296 ALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQV 344
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
S Q ++ + ++++FG+ L + TVV ++ L+ + EA+
Sbjct: 147 SPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAF 206
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
ME C D+ A+ VI + A +F LK F P +Y ++ + +
Sbjct: 207 NRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHK-FEPDVIVYTSLVHGWCRA 265
Query: 454 GRLAKCRDVCKEAEMAG 470
G +++ V +E +MAG
Sbjct: 266 GDISEAESVFREMKMAG 282
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 91/217 (41%), Gaps = 23/217 (10%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVM 319
V + G+ + G++ A + K G + P++Y I+ G+ + +
Sbjct: 254 VYTSLVHGWCRAGDISEAESVFREMKMAG--ISPNVYTYSIVIDALCRSGQITRAHDVFA 311
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
+LD + + + +++V +R + V +++ ++ Y LI +
Sbjct: 312 EMLDAGCNPNSVTFNN-----LIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIET 366
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
+ EA+ V+ +M ++C + ++ + + D++ A R F+++KE G P
Sbjct: 367 HCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPN 426
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
Y ++R+F V K A+M FKL K+
Sbjct: 427 TVTYNILMRMFA----------VPKSADMI-FKLKKE 452
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 6/185 (3%)
Query: 277 GNLKLAWKLL--MVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
G+ A K+ MV + GG + D + LI+ G D M + L + Q L
Sbjct: 163 GSFAYARKVFDGMVTR-GGLLPDARSFRALIV--GCCRDGRMEEVDALLTVMQGQGFCLD 219
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
CT I++V + +F V LF G P VV YT I ++A V+
Sbjct: 220 NATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLE 279
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMAS 453
M A ++ + +I + RA R F KL K + + P Y MI +
Sbjct: 280 EMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKE 339
Query: 454 GRLAK 458
G+LA+
Sbjct: 340 GKLAR 344
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 8/235 (3%)
Query: 253 KLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP 312
++ N+ +S V A G +KGGN A ++ K Y LI GK
Sbjct: 215 EMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAG 274
Query: 313 DKYMLVMTLLDELGQRD-DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
+M + L E+ D N+ TA++ R E +F +G +P V
Sbjct: 275 KSFM-ALKLFHEMMSHDCKPNICTY--TALVNAFAREGLCEKAEEVFEQMQEAGLEPDVY 331
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF--VALNDISRAIRYFS 429
Y L+ + A + M+ C D +Y +++ + D + A+ F
Sbjct: 332 AYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAV--FK 389
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+K G PT + ++ + G + KC ++ + +G KLD + +L +
Sbjct: 390 DMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNL 444
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F +G PT Y L+ + +A TV +M C D+ +Y ++ +
Sbjct: 336 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAY 395
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
V +D+ A ++F +LK+ GF P Y +I+ + L K + +E ++ G K ++
Sbjct: 396 VNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQ 455
Query: 476 QTVVELL 482
++
Sbjct: 456 AIYTAMM 462
>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
Length = 975
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 36/263 (13%)
Query: 197 GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL-KVPFKLE 255
G+L F +R LG LP+ A++ F A+ P+ ++ LA+ +L
Sbjct: 139 GALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLR 198
Query: 256 NFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
V+ G ++ LL + GR D + + + ELG D++
Sbjct: 199 EMVARCGDGSVDKYT-----------LTSLLRCYCNAGRPDDANDVFQRMSELGW-VDEH 246
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR-DPTVVMYT 374
+L TL+ + ++ + + ++ +G+RL + + L H FT GR D + M+
Sbjct: 247 VLT-TLMVAFSKWGKVDGAVELLGSMEALGMRLSE-KTLSVLVHGFTKQGRVDKAMDMFA 304
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
++ + DL Y V+I+ DI+RA++ F ++K +
Sbjct: 305 KMVSYGF--------------------VVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSS 344
Query: 435 GFCPTYDIYRDMIRIFMASGRLA 457
G P + + +I F G A
Sbjct: 345 GVAPDVRLLKKVIEAFCREGDFA 367
>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 636
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 1/202 (0%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
K + G L+ AW+++ + G D Y L KN D+ L+ E+ Q+
Sbjct: 233 KAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKN-DETWRAEELVVEMAQQAG 291
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L S++ I+ R + G SG P V+++ TL+ L
Sbjct: 292 LRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVD 351
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ ME D+ Y + ++ +++ ++ F K+ EAG P +Y + + +
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411
Query: 451 MASGRLAKCRDVCKEAEMAGFK 472
+ + + K ++ ++ G +
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVR 433
>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
Length = 634
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 1/202 (0%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
K + G L+ AW+++ + G D Y L KN D+ L+ E+ Q+
Sbjct: 233 KAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKN-DETWRAEELVVEMAQQAG 291
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L S++ I+ R + G SG P V+++ TL+ L
Sbjct: 292 LRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVD 351
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ ME D+ Y + ++ +++ ++ F K+ EAG P +Y + + +
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411
Query: 451 MASGRLAKCRDVCKEAEMAGFK 472
+ + + K ++ ++ G +
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVR 433
>gi|292487306|ref|YP_003530178.1| Rf1 protein [Erwinia amylovora CFBP1430]
gi|292900323|ref|YP_003539692.1| pentatricopeptide repeat protein [Erwinia amylovora ATCC 49946]
gi|428784238|ref|ZP_19001730.1| Pentatricopeptide repeat protein [Erwinia amylovora ACW56400]
gi|291200171|emb|CBJ47299.1| putative pentatricopeptide repeat protein [Erwinia amylovora ATCC
49946]
gi|291552725|emb|CBA19770.1| Rf1 protein, mitochondrial precursor [Erwinia amylovora CFBP1430]
gi|426277377|gb|EKV55103.1| Pentatricopeptide repeat protein [Erwinia amylovora ACW56400]
Length = 438
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G E L + + DP V + T L+ S+ KC +A V +ME N DL ++
Sbjct: 117 KIGEAEKLVNAMS----DPHVWVLTALMEGCFSKHKCGDAEQVFKSMEDKNLPVDLWVFK 172
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+IK + + RA +K+++AG P I ++ ++ +G A V K+
Sbjct: 173 SLIKYYTRTVNAERAEWVMTKMQKAGIKPDEGILDKLLEVYRKAGNHAGEMHVSKQ 228
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 109/279 (39%), Gaps = 14/279 (5%)
Query: 222 AQKQPHLFPDDRLLASTVEVLARHHEL----KVPFKLENFVSLASKGVLEATAKGFVKGG 277
+ K+ LFP+ + ++ L + L + L++ V + G + G
Sbjct: 436 SMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHG 495
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLS 334
+ A+ L D G+ + +Y LI + G+ D + + ++ G DL L
Sbjct: 496 KVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHR-GCSPDLMLL 554
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ K G ++K +LF G P V Y+ LIH + ++ + +
Sbjct: 555 NNYMDCVFKAG-EIEKG---RALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFY 610
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M+ D AY +VI F +++A + ++K G PT Y +I
Sbjct: 611 EMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKID 670
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RL + + +EA+ +D VV I+ ++G I
Sbjct: 671 RLDEAYMLFEEAKSKA--VDLNVVVYSSLIDGFGKVGRI 707
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 3/184 (1%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G + +AWK K G + D + +I L K ++ + L +EL +
Sbjct: 282 FGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCK-AERVDEAVELFEELDSNKSVP 340
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
T IM G + KF SL G P+V+ Y ++ + K EAL +
Sbjct: 341 CVYAYNTMIMGYG-SVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRI 399
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+ M+ + +L +Y ++I + ++ A++ +KEAG P MI
Sbjct: 400 LEAMKM-DAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCK 458
Query: 453 SGRL 456
+ RL
Sbjct: 459 AQRL 462
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+L G + TV ++TTLI E + AL+++ M++++ DL Y V I F
Sbjct: 223 TLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCF 282
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ + A ++F +LK G P + MI + + R+ + ++ +E
Sbjct: 283 GKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEE 332
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 20/258 (7%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV-LEATA-----KGFVKGG 277
K L PD R + + L + K +KL F + +G+ L+ A GF K G
Sbjct: 578 KAQGLTPDVRSYSILIHGLVKGGFSKDTYKL--FYEMKEQGLHLDTRAYNIVIDGFCKSG 635
Query: 278 NLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRD-DLNLS 334
+ A++LL K G L P++ Y +I L K D+ L +E + DLN+
Sbjct: 636 KVNKAYQLLEEMKTKG--LQPTVVTYGSVIDGLAK-IDRLDEAYMLFEEAKSKAVDLNVV 692
Query: 335 QQDC--TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
KVG + + ++E L G P + L+ + + ++ EAL
Sbjct: 693 VYSSLIDGFGKVGRIDEAYLILEELMQ----KGLTPNTYTWNCLLDALVKAEEIDEALVC 748
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
NM+ C + Y +++ + ++A ++ ++++ G P Y MI
Sbjct: 749 FQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLAR 808
Query: 453 SGRLAKCRDVCKEAEMAG 470
G + + +D+ + + +G
Sbjct: 809 VGNVLEAKDLFERFKSSG 826
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 12/191 (6%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGK--NPDKYMLVMT 320
V A G K K A+ L+ D G +DP++ Y+ +I L N + + V
Sbjct: 246 VYNALIHGVCKECRFKEAFDLMNEMVDRG--VDPNVISYSTVISCLSDMGNVELSLAVFG 303
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
+ G R ++ Q T+++K + G L++ G P VV Y TLIH
Sbjct: 304 RMFVRGCRPNV----QTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGL 359
Query: 381 LSEKKCREALTVVWN-MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
S+ EA++ VWN ME + ++ Y +I F D+ A ++K+ G P
Sbjct: 360 CSDGNMDEAIS-VWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPN 418
Query: 440 YDIYRDMIRIF 450
+Y M+ +
Sbjct: 419 VVVYTCMVDVL 429
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 51/130 (39%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
V LF G +P Y LI S S+ K EAL ++ ME S C + Y +I
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F N I A F +++ G Y +I S R+ + + M G K
Sbjct: 478 DGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQK 537
Query: 473 LDKQTVVELL 482
DK T LL
Sbjct: 538 PDKFTYNSLL 547
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 55/282 (19%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK 271
PE AL+ F +QP + +E++ H + + L + +++A
Sbjct: 81 PEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVG---DVAQVFDLMQRQIIKANVG 137
Query: 272 GF--------VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLD 323
F V+GG L+ A L V K+ G +L+ Y LI Y LV + D
Sbjct: 138 TFCTVFGAVGVEGG-LRSAPVALPVMKEAGIVLNAYTYNGLI---------YFLVKSGFD 187
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
M V + GVV PTV Y+ L+ L+
Sbjct: 188 R---------------EAMDVYKAMAADGVV-------------PTVRTYSVLM---LAF 216
Query: 384 KKCREALTVVW---NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
K R+A TVV MEA ++ +Y + I++ + A R K++E G P
Sbjct: 217 GKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDV 276
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I+I +GRLA +DV + + + K D+ T + LL
Sbjct: 277 VTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLL 318
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 330 DLNLSQQDCT-AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
++NL DCT + G+ R K V L + P ++ Y T++ +
Sbjct: 549 EMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVN 608
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
AL ++++M + C+ DL +Y V+ V + A F ++K+ P Y ++
Sbjct: 609 YALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKV-LAPDYATVCTIL 667
Query: 448 RIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQ 483
F+ SG + + +E + K+D+ +V L++
Sbjct: 668 PSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLME 704
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S F T G +P ++ Y LIH + EAL++ +ME +L Y +I
Sbjct: 962 SYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 1021
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ A + + +L G+ P Y +IR + SG
Sbjct: 1022 GKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 15/240 (6%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EATAKGFVKGGNLKLAWK 284
+D +++ T V A +V L+ F + KG++ + GF+K A +
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALE 402
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
L G + + I GK+ + K + L+ G D+ +
Sbjct: 403 LFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLA 462
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K G + G+ + +FH G P + YT +I EA+ + M + C
Sbjct: 463 KTG----RLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCA 518
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ A +I + + A + F +LKE PT Y ++ GR K ++V
Sbjct: 519 PDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLA---GLGREGKVKEV 575
>gi|225446837|ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Vitis vinifera]
Length = 357
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 348 LQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L + G ++ + H F+ + P ++ Y TL++S + L M + D
Sbjct: 218 LGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQKVGRLDLCLVFFREMGENGLKPD 277
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L YR +I+ F ++ A+R FS++K+ CP+ IYR +I G++ + +
Sbjct: 278 LRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYIYRSLINYSKKMGKVELAMSLSE 337
Query: 465 E 465
E
Sbjct: 338 E 338
>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like, partial [Cucumis sativus]
Length = 312
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E +F +G +P V Y L+ S A + M+ C D +Y +++
Sbjct: 50 AEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD 109
Query: 414 LF--VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ L++ ++A+ F ++K G PT + ++ + ++G +AKC D+ + +G
Sbjct: 110 AYGRAGLHEDAQAV--FEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGL 167
Query: 472 KLDKQTVVELLQI 484
K D + +L +
Sbjct: 168 KPDTFVMNSMLNL 180
>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
Length = 731
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAY 408
KF +F +G + T V + +IH + REA +V NM + +C D+ Y
Sbjct: 244 KFAEGSKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTNMKQRKDCCPDVATY 303
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I+++V + + +++++G +R +I + A+ + K + +E E
Sbjct: 304 NSLIEMYVKNDKLELVSGCLERMRDSGVSADQVTFRTLISAYAANNVVWKAEALVQEMEG 363
Query: 469 AGFKLDKQTVVELLQIEKESR 489
+GF +D+ ++ + +R
Sbjct: 364 SGFLIDQAMYTVMIAMYVRAR 384
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
++ W G P+ V Y LI S + A +++ +ME C ++ Y +I F
Sbjct: 320 MWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFS 379
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
D+ AI ++ + +G P +Y +M+ +F
Sbjct: 380 KAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVF 413
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
G S+++ + SG P VV+YT ++ + +A +++ M NC + +
Sbjct: 384 LGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNT 443
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I+ + RA+ F +++ G P Y ++I G + E + G
Sbjct: 444 LIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHG 503
Query: 471 FKLD---KQTVVELLQIEKESR 489
+L TVV L + SR
Sbjct: 504 IELSLVTYNTVVSGLCQTRMSR 525
>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1128
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 3/150 (2%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTV 392
+D M + L KFG ++ + + RD P V+ Y T++ + E +
Sbjct: 697 EDSVTYMILIKGLCKFGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAEGYEL 756
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M+ + L D Y V+I+ FV I A L ++G+ IY +I
Sbjct: 757 FKEMKENKVLIDRAIYGVLIEAFVKDGKIGSACDLLQGLVDSGYRADLGIYNSLIEGLCN 816
Query: 453 SGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
R+ K R + + G +LD +TV +L
Sbjct: 817 VKRVDKARKLFQIMVQEGLELDFKTVNPML 846
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + + ++FGV++ L + + PTVV Y +IH+ +EA+ V M+
Sbjct: 364 TTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQE 423
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D Y +I + + A+ + +++E G P Y M+ G+LA
Sbjct: 424 AGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLA 482
>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Vitis vinifera]
Length = 501
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV Y LI+ E + EA V+ M+ C + YR+++ F + D ++
Sbjct: 365 PDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKV 424
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
S + G CP + + D++ + +G++ V +E E
Sbjct: 425 LSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEME 464
>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22670, mitochondrial; Flags: Precursor
gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 562
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/306 (18%), Positives = 112/306 (36%), Gaps = 18/306 (5%)
Query: 179 SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST 238
SH+DV + L KC + + + +R N +A F WA Q +
Sbjct: 115 SHEDVVKELSKCDVVVTESLVLQVLRRFS--NGWNQAYGFFIWANSQTGYVHSGHTYNAM 172
Query: 239 VEVLARHHELKVPFKLENFVS------LASKGVLEATAKGFVKGGNL-KLAWKLLMVAKD 291
V+VL + + ++L N ++ L + + + K G K L + K
Sbjct: 173 VDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKS 232
Query: 292 GGRMLDPSIYAKLILELGKNPD---KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
G D L+ L K + + + L D + + ++ +
Sbjct: 233 YGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKP------DARTFNILIHGFCKA 286
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
+KF ++ + P VV YT+ + + E R ++ M + C ++ Y
Sbjct: 287 RKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTY 346
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+V+ ++ A+ + K+KE G P Y +I I +GR ++ ++
Sbjct: 347 TIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTN 406
Query: 469 AGFKLD 474
G + D
Sbjct: 407 QGVRRD 412
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 45/117 (38%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T+ ++ + F V + +G +P VV YT ++HS K+ EAL V M+
Sbjct: 312 TSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKE 371
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
C+ D Y +I + A F + G +Y MI + R
Sbjct: 372 DGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSR 428
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G P V +Y L+H S + +A T+ M++ +C D+ Y ++
Sbjct: 173 FKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ + F ++ AG+ P + +I +G L K +V AG K +K T
Sbjct: 233 ARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYT 292
Query: 478 VVELL 482
L+
Sbjct: 293 YTTLI 297
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
V Y+++I S + E K E+ V+ M A+ C D+ A+ V++ F N++ +A +
Sbjct: 9 NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+ E+G+ P Y +I G+L + + E M G Q L++ ++
Sbjct: 69 QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128
Query: 489 R 489
R
Sbjct: 129 R 129
>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 482
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/336 (19%), Positives = 128/336 (38%), Gaps = 45/336 (13%)
Query: 149 LASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGH 208
+A +I K + +P +I A D GL +V E D RF G L++
Sbjct: 33 VADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVE--DVLYRFRNAGLLAY------- 83
Query: 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA 268
+ F W++KQ H R +E A+ + K+ + L N ++ K +L
Sbjct: 84 --------RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLIN--AMMKKKMLNV 133
Query: 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328
+ ++M + +D +IYA ++E P + LL L +
Sbjct: 134 E------------TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKS 181
Query: 329 DDLNLSQQDCTAI--------MKVGIRLQKFG------VVESLFHWFTHSGRDPTVVMYT 374
++ +Q+ + I L+ +G +F +G P +V Y+
Sbjct: 182 KNVRKAQEIFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYS 241
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
++ + EAL +V +M+ S C Y V++ + + A+ F +++ +
Sbjct: 242 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERS 301
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
G ++ +I F + R+ V KE + G
Sbjct: 302 GMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKG 337
>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
Length = 499
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 106/293 (36%), Gaps = 40/293 (13%)
Query: 186 VLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARH 245
VLD+ R +R ELG + + L F W QKQ D+ + + + V+ R
Sbjct: 78 VLDRHVRVVRTEHCFLLFEELGRRDAWLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRK 137
Query: 246 HELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI 305
G +++A L ++ G D S+Y LI
Sbjct: 138 -------------------------------GQIRMAMWLFSQMRNSGCKPDTSVYNSLI 166
Query: 306 LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV------VESLFH 359
+ DK L LG + + ++ I+ I L+ F V+ LF
Sbjct: 167 GAHLHSRDK---TKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFK 223
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
S P V Y ++ + +E +V+ M+++ C D+ + ++I +
Sbjct: 224 DLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQ 283
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ + F L + PT+ + MI + + K V ++ E GFK
Sbjct: 284 TFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFK 336
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
IM R F ++ +G P +V+Y L+H+ + +AL V+ N+EA+
Sbjct: 331 IMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANR 390
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
L + Y ++ +V +I +A+ F ++K AG P Y ++ SG LAK R
Sbjct: 391 LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLL-----SG-LAKAR 444
Query: 461 DV 462
+
Sbjct: 445 QM 446
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
GVVE L G +P V+ ++ +I+ K+ ++A M + Y ++
Sbjct: 475 GVVEKLLE----HGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNIL 530
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
I+ + D R+++ F+ +KE+G P Y +I+ F ++ K ++ K G
Sbjct: 531 IRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGL 590
Query: 472 KLDKQTVVELLQIEKES 488
K D T L++ ES
Sbjct: 591 KPDNFTYSTLIKALSES 607
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
F + + W G P + Y LI S S ++ + NM+ S +L AY
Sbjct: 509 FDCFKEMLEW----GIKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNA 564
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+I+ F + + +A + G P Y +I+ SGR ++ R++ E G
Sbjct: 565 IIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHG 624
Query: 471 FKLDKQT 477
D T
Sbjct: 625 CVPDSYT 631
>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
Length = 548
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A+ KVG R+Q+ + LF + G PT++ Y +I + + E+ +A + +ME S
Sbjct: 412 AMFKVG-RMQE---AKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 467
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
C D +I++ + +I++A Y SK+ + G P +I +F +G+
Sbjct: 468 GCTPDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILPEATTTSLLIYLFSVNGK 523
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 12/181 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDELG 326
G+ GN+K A LL + G ++P IY L + G+ D L D L
Sbjct: 272 GYCLVGNMKEAVGLLDSMESVG--VEPDIYTYNTLVDGYCKHGRIDDALTL---FRDMLH 326
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+R + L+ I+ + ++ V + +FH SG ++ Y T++
Sbjct: 327 KR--VTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCT 384
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EA ++ + + N FD+ + +VI+ + + A F+ + G PT YR M
Sbjct: 385 DEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRMQEAKELFAAISTYGLVPTILTYRVM 444
Query: 447 I 447
I
Sbjct: 445 I 445
>gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
Length = 1037
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +PTV +YT+ I EK+ R AL ++ M C + Y ++ ++ + + A
Sbjct: 890 GINPTVHVYTSFIVYSFKEKQTRRALEILAKMLQEGCEPSIATYSAIVHGYMNMGKVCEA 949
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ F+ +K+ G P + Y +I +GR
Sbjct: 950 WKVFNYMKKYGPSPDFKAYTMLISCLCKAGR 980
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 69/368 (18%), Positives = 135/368 (36%), Gaps = 68/368 (18%)
Query: 160 VYKNPSFLISLARDIKGLD---SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERAL 216
V + + L+S+ + LD S + V +VL +C +F P AL
Sbjct: 136 VIRGGNGLVSMEERLGNLDVMFSSEIVEKVLKRCFKF------------------PHLAL 177
Query: 217 QTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL-ENFVSLASKGVLEATAKGFVK 275
F W + + + + + + + K+ KL E S + ++
Sbjct: 178 GFFNWVKSRDGFQCTTNVFNTVLSIAGEARDFKLIDKLLEEMESYSLLKDIKTWTILISL 237
Query: 276 GGNLKLAWKLLMV---AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD--- 329
GN KL K LMV K+ G D +Y LI L K L M E+ ++
Sbjct: 238 YGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICSLSA-AGKPELAMEFYQEMAKKGISV 296
Query: 330 -DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + + +++ G + + + F RD +Y ++ S ++ +E
Sbjct: 297 VDMKMCKMLLSSLAGSGDTASVLDIAKDMVALFNVQERD----VYHYILKSFCISRRIKE 352
Query: 389 ALTVVWNMEASNCLFDLP----------------------------------AYRVVIKL 414
AL + ++ + + D Y ++I
Sbjct: 353 ALEFIRDLNSKGIVLDSEYFEILIGGLCRANRIEDALELINIIKRKGDVDGKIYGIIINW 412
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
++ N++S+A+ F +KE G+ PT Y +++ + K ++ KE G +LD
Sbjct: 413 YLRKNEVSKALDLFQNMKEMGYFPTTSTYTQLMQHLFSLAEYEKGFELYKEMLEKGIELD 472
Query: 475 KQTVVELL 482
++ ++
Sbjct: 473 TVAIMTVV 480
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 15/174 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI-------RLQKFGVVES--------LFHWFTHS 364
TL+ + D+LN +Q ++ G+ + +G E+ LF S
Sbjct: 472 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 531
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
D V Y +IH K EA + ++ D+ Y V+I F + IS A
Sbjct: 532 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478
F K+K+ G P Y +IR + +G + K ++ E GF D T+
Sbjct: 592 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI 645
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G P V+ + TLI+ E + EA +V M D+ Y ++
Sbjct: 212 ALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGM 271
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ D A+ SK++E P IY +I
Sbjct: 272 CKMGDTKSALNLLSKMEETHIKPDVVIYSAII 303
>gi|357117116|ref|XP_003560320.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Brachypodium distachyon]
Length = 598
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
L++EL R L LS + TA++ RL K + + +G P VV++ TL+
Sbjct: 179 LVEELQPR--LPLSIRHYTALLYGWCRLGKLDEAKHVLARMKAAGVAPDVVVFNTLLAGF 236
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
++ + +A + ME +C + +Y +++ + + +R F +++ G P
Sbjct: 237 VAADRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSRGRVDEVMRVFVEMRRKGCAPDS 296
Query: 441 DIYRDMIRIFMASGRLAK 458
Y ++ F +GRL++
Sbjct: 297 VTYGTLVSAFCKAGRLSQ 314
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K+ + +F SG P Y +L+ + E + +M + + + DL +
Sbjct: 310 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFS 369
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++ LF ++ +A+ YF+ +KEAG P IY +I+ + G +++ ++ E
Sbjct: 370 SMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQ 429
Query: 470 GFKLDKQTVVELLQ 483
G +D T +L
Sbjct: 430 GCAMDVVTYNTILH 443
>gi|242091205|ref|XP_002441435.1| hypothetical protein SORBIDRAFT_09g026630 [Sorghum bicolor]
gi|241946720|gb|EES19865.1| hypothetical protein SORBIDRAFT_09g026630 [Sorghum bicolor]
Length = 664
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
VE L+ SG Y L+ + S + + ++ M+ D AY ++
Sbjct: 381 VEELYSEMCESGVGADEETYLLLMEACFSVDRIDDGISYFDKMDELELKPDATAYHKLVD 440
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
V + + +A YF ++KE G P+ Y +++ ++A+ RL V K G L
Sbjct: 441 GLVGFSMVDKAQEYFDQMKEKGVSPSISSYETLLKAYIAADRLDDAVKVAK-----GILL 495
Query: 474 DKQTV 478
D++ V
Sbjct: 496 DEKVV 500
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 98/261 (37%), Gaps = 47/261 (18%)
Query: 230 PDDRLLASTVEVL--ARHHELKVPFKLENF-----VSLASKGVLEATAKGFVKGGNLKLA 282
P+D L+ + + L R H+ V L+ +++A+ L G +G N+K A
Sbjct: 440 PNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNAL---IHGLCEGKNMKGA 496
Query: 283 WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
++L + G LD Y +I K+ + + L RDD+
Sbjct: 497 TEVLRTMVNKGMELDNITYNIMIQGCCKDSK-------IEEALKLRDDM----------- 538
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
IR G P M+ ++IH+ K EAL ++ M+
Sbjct: 539 ---IR----------------KGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQ 579
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ +Y +I + DI +A Y ++L G P IY +I + +G ++ V
Sbjct: 580 PDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGV 639
Query: 463 CKEAEMAGFKLDKQTVVELLQ 483
E G + T L+
Sbjct: 640 LDTMESIGIQPTNVTYCSLMH 660
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 2/212 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K ++ A LL + G P+ Y LI LGK +Y L EL +
Sbjct: 386 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK-AKRYEAANELFLELKENCGR 444
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ ++ I +G + + LF+ G +P V Y L+ + EA +
Sbjct: 445 SSARIYAVMIKNLG-KCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFS 503
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ ME + C DL ++ +++ +A F K+K++ P Y ++
Sbjct: 504 ALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLS 563
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
SG + + +E GF+ D T +L+
Sbjct: 564 RSGMFEEAAKLMREMGSRGFEYDHITYSSILE 595
>gi|440577310|emb|CCI55317.1| PH01B001I13.13 [Phyllostachys edulis]
Length = 636
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+++ V RL + ES+F G D VV Y +I ++ +A+ ++ M+
Sbjct: 400 ASVINVYCRLGRSDRAESIFSEMIDRGYDKCVVAYGNMISMYGKIRRASDAMRLLALMKQ 459
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
C ++ Y ++ + L D +A + + ++ P Y +I F SG L +
Sbjct: 460 KGCEPNVWVYNSLLDMHGRLGDSRQAEKIWKEMMRRTVQPDRVSYTAIISAFNRSGELDR 519
Query: 459 CRDVCKEAEMAGFKLDK 475
C D+ +E G K+DK
Sbjct: 520 CMDLYQEFRETGGKVDK 536
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 25/215 (11%)
Query: 294 RMLDPSI--YAKLILELGKNPDK--YMLVMTLLDELGQRDD--------LNLSQQDCTAI 341
R L P+I Y KL+ LG P + Y V+ + LG+ D ++ C +
Sbjct: 375 RGLKPAIRAYDKLV-ALGCEPGQVTYASVINVYCRLGRSDRAESIFSEMIDRGYDKC--V 431
Query: 342 MKVGIRLQKFGVVES------LFHWFTHSGRDPTVVMYTTLI--HSRLSEKKCREALTVV 393
+ G + +G + L G +P V +Y +L+ H RL + R+A +
Sbjct: 432 VAYGNMISMYGKIRRASDAMRLLALMKQKGCEPNVWVYNSLLDMHGRLGDS--RQAEKIW 489
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M D +Y +I F ++ R + + + +E G + M +F
Sbjct: 490 KEMMRRTVQPDRVSYTAIISAFNRSGELDRCMDLYQEFRETGGKVDKALAGLMAGVFSKC 549
Query: 454 GRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
R + D+ K+ ++ G KLD++ + +L +E+
Sbjct: 550 SRFNELIDLLKDMKLEGAKLDRRLYMSVLNSLREA 584
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 15/186 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI-------RLQKFGVVES--------LFHWFTHS 364
TL+ + D+LN +Q ++ G+ + +G E+ LF S
Sbjct: 472 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 531
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
D V Y +IH K EA + ++ D+ Y V+I F + IS A
Sbjct: 532 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F K+K+ G P Y +IR + +G + K ++ E GF D T+ + +
Sbjct: 592 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADL 651
Query: 485 EKESRI 490
+ R+
Sbjct: 652 ITDGRL 657
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G P V+ + TLI+ E + EA +V M D+ Y ++
Sbjct: 212 ALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGM 271
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ D A+ SK++E P IY +I
Sbjct: 272 CKMGDTKSALNLLSKMEETHIKPDVVIYSAII 303
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 15/186 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI-------RLQKFGVVES--------LFHWFTHS 364
TL+ + D+LN +Q ++ G+ + +G E+ LF S
Sbjct: 467 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 526
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
D V Y +IH K EA + ++ D+ Y V+I F + IS A
Sbjct: 527 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 586
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F K+K+ G P Y +IR + +G + K ++ E GF D T+ + +
Sbjct: 587 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADL 646
Query: 485 EKESRI 490
+ R+
Sbjct: 647 ITDGRL 652
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SLF G P V+ + TLI+ E + EA +V M D+ Y ++
Sbjct: 207 SLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGM 266
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ D A+ SK++E P IY +I
Sbjct: 267 CKMGDTKSALNLLSKMEETHIKPDVVIYSAII 298
>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
Length = 747
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 6/188 (3%)
Query: 297 DPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
+ + A LI GK P + + + L+ +LG + + A++K + + +
Sbjct: 171 EEATVAALIAAYGKANIPQESVKLFRLMPDLG----IARTALSYNAVLKAILCRGREAMA 226
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+++ P + Y TLI KK AL V +M+ D+ Y ++
Sbjct: 227 RRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNA 286
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+V D+ A + F ++ AGF Y MI+ ++ +G++ + + E G +L
Sbjct: 287 WVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLS 346
Query: 475 KQTVVELL 482
++T L+
Sbjct: 347 EKTFAALM 354
>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
Length = 747
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 6/188 (3%)
Query: 297 DPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
+ + A LI GK P + + + L+ +LG + + A++K + + +
Sbjct: 171 EEATVAALIAAYGKANIPQESVKLFRLMPDLG----IARTALSYNAVLKAILCRGREAMA 226
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+++ P + Y TLI KK AL V +M+ D+ Y ++
Sbjct: 227 RRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNA 286
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+V D+ A + F ++ AGF Y MI+ ++ +G++ + + E G +L
Sbjct: 287 WVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLS 346
Query: 475 KQTVVELL 482
++T L+
Sbjct: 347 EKTFAALM 354
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 43/110 (39%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS EA+ V M+ + C D
Sbjct: 376 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 435
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y +I + + A+ + +++ G P Y +I +G L
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHL 485
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 257 FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DK 314
F ++ S +L G + G + A +L M D G L Y ++ L +N D+
Sbjct: 586 FCAITSNIILH----GLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDE 641
Query: 315 YMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371
+ + ++L ++ D+ A++KVG + +SLF G P V+
Sbjct: 642 ---ALRMFEDLRSKEFELDVWTFNIVINALLKVG----RIDEAKSLFSAMVLRGPVPHVI 694
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
Y+ +I SR+ E E+ + +ME + C D V+I+ + D+ RA Y +K+
Sbjct: 695 TYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKI 754
Query: 432 KEAGF 436
E F
Sbjct: 755 DEKNF 759
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 43/110 (39%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS EA+ V M+ + C D
Sbjct: 376 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 435
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y +I + + A+ + +++ G P Y +I +G L
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHL 485
>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 989
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G DP +V Y +LI E AL++V M+ N FD+ AY +IK + L
Sbjct: 596 GIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDP- 654
Query: 425 IRYF-SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
RY S++ E G P Y +I + G+ D+ E + G
Sbjct: 655 -RYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYG 700
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 43/110 (39%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS EA+ V M+ + C D
Sbjct: 376 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 435
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y +I + + A+ + +++ G P Y +I +G L
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHL 485
>gi|317106734|dbj|BAJ53230.1| JHL06P13.10 [Jatropha curcas]
Length = 399
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 6/194 (3%)
Query: 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358
+I K + E+G DK LVM + G D+ T ++ R + + + L+
Sbjct: 180 NIIIKALCEMGY-LDKAYLVMVQFQKSGIEADV----ITYTTLISASYRNKLWMIGNGLW 234
Query: 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
+ G P + + I ++ ++ EA V+ M+ D Y +VIK F
Sbjct: 235 NLMVLKGCKPNLATFNVRIQYLVNSRQSWEANDVMRLMQRIGIAPDQVTYNLVIKGFCLA 294
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478
+ A R +S L+ + P + IY+ MI G +CK+ G+ L T+
Sbjct: 295 GYLEMAKRVYSALQGEVYKPNFKIYQTMIHYLCKGGEFDLAYTMCKDCMGKGWYLHVDTI 354
Query: 479 VELLQ-IEKESRIG 491
LL + K +G
Sbjct: 355 HALLNGLMKNGHLG 368
>gi|297814291|ref|XP_002875029.1| hypothetical protein ARALYDRAFT_912211 [Arabidopsis lyrata subsp.
lyrata]
gi|297320866|gb|EFH51288.1| hypothetical protein ARALYDRAFT_912211 [Arabidopsis lyrata subsp.
lyrata]
Length = 653
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 10/170 (5%)
Query: 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD-------PTVVMYTT 375
+EL + ++ N C + ++ FG L F ++ P V Y
Sbjct: 426 NELSKEEEENFRIVTCRV---YAVMIKHFGKRGKLMDLFNEMIKEEDQEESGPDVYAYNA 482
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
L+ + EA ++ ME C+ D+ ++ +++ F RAI F +K +G
Sbjct: 483 LMSGMVKAGMIDEANLLLRKMEEKGCIADVNSHNIIMNGFARTGVPERAIELFETMKHSG 542
Query: 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIE 485
P Y ++ F +G + + +E + GF D T +L+ +
Sbjct: 543 LKPDGITYNTLLGCFAHAGMFKEAARMMREMKDEGFVYDAITHSSILEAD 592
>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
salt-inducible-like protein (GB:AL021637) [Arabidopsis
thaliana]
Length = 991
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 33/309 (10%)
Query: 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE-LKVPFKLENF 257
++ ++ LPE+ L TF + + + P + L ++VL H L+ F+L F
Sbjct: 122 FTYLIKVYAEAKLPEKVLSTF-YKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFEL--F 178
Query: 258 VSLASKGVLEAT------AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY-----AKLIL 306
S GV+ T + F +L +A++L G+ML+ + K+++
Sbjct: 179 KSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF------GKMLERDVVPDVDSYKILI 232
Query: 307 ELGKNPDKYMLVMTLLDELGQR----DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362
+ + M LLD++ + D L+ T ++ R + L
Sbjct: 233 QGFCRKGQVNGAMELLDDMLNKGFVPDRLSY-----TTLLNSLCRKTQLREAYKLLCRMK 287
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
G +P +V Y T+I E + +A V+ +M ++ C + +YR +I
Sbjct: 288 LKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFD 347
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT---VV 479
+Y ++ GF P + + +++ F + G++ + DV + G L T V+
Sbjct: 348 EGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVI 407
Query: 480 ELLQIEKES 488
L+ E ES
Sbjct: 408 PLICNEDES 416
>gi|302143548|emb|CBI22109.3| unnamed protein product [Vitis vinifera]
Length = 386
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 348 LQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L + G ++ + H F+ + P ++ Y TL++S + L M + D
Sbjct: 247 LGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQKVGRLDLCLVFFREMGENGLKPD 306
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L YR +I+ F ++ A+R FS++K+ CP+ IYR +I G++ + +
Sbjct: 307 LRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYIYRSLINYSKKMGKVELAMSLSE 366
Query: 465 E 465
E
Sbjct: 367 E 367
>gi|22325737|ref|NP_671862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546776|sp|Q84VG6.2|PP160_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g17525, mitochondrial; Flags: Precursor
gi|330251547|gb|AEC06641.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 626
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 6/213 (2%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG + +KLL + K G + +Y L+ L KN K +L+ E+ + +D
Sbjct: 190 KGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKN-GKVGRARSLMSEMKEPND 248
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ + +A +Q ++E F G P VV T ++ +E + EAL
Sbjct: 249 VTFNIL-ISAYCNEQKLIQSMVLLEKCFSL----GFVPDVVTVTKVMEVLCNEGRVSEAL 303
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ +E+ D+ A ++K + AL + A R+F +++ G+ P + Y +I +
Sbjct: 304 EVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGY 363
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G L D + + + + T L++
Sbjct: 364 CDVGMLDSALDTFNDMKTDAIRWNFATFNTLIR 396
>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 367
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 18/209 (8%)
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD---------LNLSQ 335
LLM+ GGR+ + + + IL+ G P ++ T L ++ R L + +
Sbjct: 157 LLMMHVQGGRLKEAAEVYQRILDAGLKPT--VVTYTGLVQMYCRASKHKEAIEVFLEMRR 214
Query: 336 QDCTA-IMKVGIRLQKFGVVES------LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
C +M + + +G S +F + G P VV + LI + + K +E
Sbjct: 215 VGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQE 274
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
M AS CL DL Y V++ + +A F +++ G P Y MI+
Sbjct: 275 IGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQ 334
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
+ S + A + V + AGF D+ +
Sbjct: 335 AYCHSKQAADAQIVLDQMTRAGFSPDRSS 363
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
++E+G D+NL A+M R+ + V L H G P VV YT L+
Sbjct: 190 MEEMGL--DVNLVAYH--AVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYC 245
Query: 382 SEKKCREALTVVWNM-EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
E + EA VV + E + D AY +I + + A R ++ +AG
Sbjct: 246 KEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNM 305
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+Y MI + GR+ + + + E G LD+ + L+
Sbjct: 306 FVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLV 347
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G VV T+I+ ++ EA + M+ +C D YR +I + L D+ RA
Sbjct: 440 GLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRA 499
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478
+ +++ GF P+ +++ I + + K D+ EM+ L TV
Sbjct: 500 TQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDI--RVEMSAKGLSPNTV 551
>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 457
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ + F G +P + YTT++ + + L ++ M FD AY V+ V
Sbjct: 205 VLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALV 264
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
I A K+ G P Y MI +F GR + + E E G K D+
Sbjct: 265 KTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQY 324
Query: 477 T 477
T
Sbjct: 325 T 325
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLF 415
LF SG P V Y L+H K EA V ++ ++ + +Y V+I
Sbjct: 99 LFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGL 158
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
++ A+ F L+ GF P Y MI + RLA R V E GF+ +
Sbjct: 159 CKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNA 218
Query: 476 QTVVELLQ 483
T +++
Sbjct: 219 ITYTTVMK 226
>gi|357521641|ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525131|gb|AET05585.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 687
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 37/188 (19%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR------------- 366
T+LD G+ ++ + + + GI++ S+ HW + SG
Sbjct: 238 TMLDIFGEAGRISSMKHVFNQMHEKGIKIDSV-TYTSMMHWLSTSGNVDEAIALWDEMKS 296
Query: 367 ----DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
PTVV YT I + +EA + M + C+ + Y V++ +A
Sbjct: 297 KGCCYPTVVSYTAFIKILFDNHRVKEATAIYKEMLHNGCVPNCYTYTVLMDHLIASGKCK 356
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A+ F K++EAG P +I KC VC M ++L
Sbjct: 357 EALEIFQKMQEAGVEPDKAACNILID---------KCSKVCGTVFMT----------KIL 397
Query: 483 QIEKESRI 490
Q KE+R+
Sbjct: 398 QYMKENRL 405
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 15/186 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI-------RLQKFGVVES--------LFHWFTHS 364
TL+ + D+LN +Q ++ G+ + +G E+ LF S
Sbjct: 256 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 315
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
D V Y +IH K EA + ++ D+ Y V+I F + IS A
Sbjct: 316 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 375
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F K+K+ G P Y +IR + +G + K ++ E GF D T+ + +
Sbjct: 376 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADL 435
Query: 485 EKESRI 490
+ R+
Sbjct: 436 ITDGRL 441
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 5/197 (2%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+G + G ++ ++L + G + D Y LI L K ++ LL E+ R+D
Sbjct: 206 RGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCK-ANELDRACDLLKEVQSRND 264
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI--HSRLSEKKCRE 388
+ T+I+ +L K LF SG +PTVV + LI ++ E
Sbjct: 265 CSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAE 324
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A+ M + +C+ D+ + +I + DI ++ + +K P Y +I
Sbjct: 325 AMH--EKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIIN 382
Query: 449 IFMASGRLAKCRDVCKE 465
R+ + RD+ ++
Sbjct: 383 ALCKDNRIHEARDLLRQ 399
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 112/259 (43%), Gaps = 23/259 (8%)
Query: 210 NLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF-KLENFVSL-ASKGVLE 267
N P AL+ F WA++Q + + +++LAR+ ++ + +E VS+ GV++
Sbjct: 59 NRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVID 118
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
+ V ++KL LL+ IY K L +K +LV + G
Sbjct: 119 VVSSSEVSMPSVKLILDLLL-----------WIYVKKSL-----LEKCLLVFYKMVSKGL 162
Query: 328 RDDLNLSQQDCTAIMKV-GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
D+ ++C ++++ R V +++ G PTVV Y T++ S +
Sbjct: 163 LPDV----KNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMV 218
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+EAL +++ M+A C + Y V++ ++ +A + G + Y +
Sbjct: 219 QEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPL 278
Query: 447 IRIFMASGRLAKCRDVCKE 465
IR + G++ + + +E
Sbjct: 279 IRGYCEKGQIEEASRLGEE 297
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 8/217 (3%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELG 326
+GF K GNL +A +L + G D Y I L+LG +P K + + G
Sbjct: 419 VRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLG-DPSKAFGMQEEMLARG 477
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
DL + K+G + +V+ + + +G P V YT++IH+ L
Sbjct: 478 FPPDLITYNVFIDGLHKLGNLKEASELVKKMLY----NGLVPDHVTYTSIIHAHLMAGHL 533
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
R+A + M + + Y V+I + + AI +F ++ E G P Y +
Sbjct: 534 RKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNAL 593
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
I ++ + + E + G +K T L+
Sbjct: 594 INGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILIN 630
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 14/216 (6%)
Query: 292 GGRMLDPSIYAKLILELGKNPDKYML--VMTLLDELG------------QRDDLNLSQQD 337
GR+ + K +L+ PD Y L ++T + G ++ + ++
Sbjct: 167 AGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVS 226
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
A++ + K G+ G P + + TLI+ K EA V+ M
Sbjct: 227 FNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR 286
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
++ D+ Y +I+ F ++ +A F +++AG Y +I + +GR
Sbjct: 287 SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQ 346
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
RD+ + + G D T L Q+ + ++ I
Sbjct: 347 DARDIYFDMKKKGILPDAITATVLQQLAGKCKLSGI 382
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P VV+YT+L+H EA V M+ + ++ Y +VI I+RA
Sbjct: 1279 EPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHD 1338
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
FS++ + G P + +++R+ + +GR K V + + G D T L++
Sbjct: 1339 VFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIE 1395
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V + G+ + GN+ A ++ K G + Y+ +I L ++ + D
Sbjct: 1284 VYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQ----ITRAHDV 1339
Query: 325 LGQRDDLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
+ D+ T +M+V ++ + V +++ G P + Y LI S
Sbjct: 1340 FSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 1399
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ EA+ ++ N C + ++ + L D++ A R F+K+K+ P
Sbjct: 1400 DDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVT 1458
Query: 443 YRDMIRIF 450
Y ++R+F
Sbjct: 1459 YNILMRMF 1466
>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
Length = 506
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 1/147 (0%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA+++ + + F V + + G P V+ YT ++ S ++ EAL+V M++
Sbjct: 264 TAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKS 323
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP-TYDIYRDMIRIFMASGRLA 457
S C D Y +I L + A + F P Y MI I GR
Sbjct: 324 SGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVPRNVATYNTMISILCQYGRDD 383
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQI 484
DV KE E K D QT LL++
Sbjct: 384 DALDVLKEMEAQSCKPDLQTYQPLLRL 410
>gi|449461209|ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1085
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 14/226 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G KGG + A + + AK G L+ Y +I L + + L D L +R L
Sbjct: 744 GLCKGGQMSEALDICVSAKTNGMKLNIICYNIVIKGLCLQS-RLIQAFQLFDSL-ERLGL 801
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
++ ++ R LF G P +Y +LI + + EA
Sbjct: 802 IPTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLIDGYIRIGQIEEAFK 861
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ + D + IK + D+ A+ +F + K G P + + +IR
Sbjct: 862 LLHELRTGAFNPDEFSVSSAIKAYCQKGDMEGALSFFFEFKNEGISPDFLGFLYLIRGLC 921
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELL-----QIEKESRIGT 492
A GR+ + RD+ +E + Q+V+EL+ +IE ES IG+
Sbjct: 922 AKGRMEEARDILRET------IQSQSVMELINKVDTEIEAES-IGS 960
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 21/205 (10%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K G L+ A+ L + K +D +YA LI + D + V LLDE+ R
Sbjct: 336 GFCKKGKLEEAFSLFEMVKGLEMEVDEFMYATLIDGCCRKGD-FDRVFGLLDEMETRG-- 392
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS-------GRDPTVVMYTTLIHSRLSEK 384
MK I V+ L W S G V+ Y+TL+H + E+
Sbjct: 393 ----------MKSSIVTYN-TVINGLCKWGRTSEADRLSKGLHGDVITYSTLLHGYIQEQ 441
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+E + D+ V+IK + A + ++ E G Y
Sbjct: 442 NITGIFETKRRLEDAGISLDVIMCNVLIKALFMVGAYEDAYILYKRMPEIGLAANSVTYH 501
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMA 469
+I + R+ + ++ E ++A
Sbjct: 502 TLINGYCNICRIDEAFEIFNEFKLA 526
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 6/190 (3%)
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT 320
A+ ++++ G K GN++ A L + G +LD YA L+ L K + +
Sbjct: 502 ANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPA-ALK 560
Query: 321 LLDELGQRDDLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+ EL +R NLS + RL KF +S ++G +P Y T+I
Sbjct: 561 VGQELMER---NLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMIS 617
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
++ E +AL ++ M+ S+ +L Y ++ + + +A +++ AGF P
Sbjct: 618 AQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTP 677
Query: 439 TYDIYRDMIR 448
T YR +++
Sbjct: 678 TPLTYRRVLQ 687
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 56/135 (41%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
+ H G P + + TL+ S + EA TV+ M+ + Y +++ +
Sbjct: 772 YAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAK 831
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
++ A+R + ++ GF P Y +I F +G + + +++ E + G T
Sbjct: 832 KSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSST 891
Query: 478 VVELLQIEKESRIGT 492
LL + R GT
Sbjct: 892 YDILLNGWSKLRNGT 906
>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 841
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G PT V + T+IH + + E +++ M+ +C D Y ++I L
Sbjct: 320 FKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTMKF-HCAPDTRTYNILISLHTK 378
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK-- 475
NDI RA YF ++K AG P YR ++ F + + ++ E + ++D+
Sbjct: 379 NNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRHMVKEAEELIAEMDDNDVEIDEYT 438
Query: 476 QTVVELLQIEKE 487
Q+ + + IE E
Sbjct: 439 QSALTRMYIEAE 450
>gi|297790207|ref|XP_002863007.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297308804|gb|EFH39266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 842
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G PT V + T+IH + + E +++ M+ +C D Y ++I L
Sbjct: 321 FKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTMKF-HCAPDTRTYNILISLHTK 379
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK-- 475
NDI RA YF ++K AG P YR ++ F + + ++ E + ++D+
Sbjct: 380 NNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRRMVKEAEELIAEMDDNDVEIDEYT 439
Query: 476 QTVVELLQIEKE 487
Q+ + + IE E
Sbjct: 440 QSALTRMYIEAE 451
>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 426
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+TLI E AL+ + ME DL Y +I+L L D S+AI
Sbjct: 7 PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
FS+LK + F P Y MI +F + + R + E AG + + LL + E
Sbjct: 67 FSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 488 SR 489
++
Sbjct: 127 NK 128
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSRFTPDLVAYNAMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 101 LISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 161 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 194
>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG P +V Y +LIH E + REA + ++ + + Y +I + +NDI
Sbjct: 267 SGVAPDIVTYNSLIHGFSREGRMREATRLFRKIKGV-VMANHVTYTTLIDGYCRMNDIDE 325
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A+R ++ GFCP Y ++R GR+ + + E + + D T L+
Sbjct: 326 ALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDNITCNTLIN 385
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 7/216 (3%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F+K G + A L +D G ++ S LI GK +Y ++ L EL R++
Sbjct: 737 FLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGK-AGRYEVLTKLKPEL-PRNNFV 794
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
S A++ + G+VE + G V+ + L+++ +A +
Sbjct: 795 YSSM-VGALINCNQLEKAAGLVEKM----RQIGLKCDSVLVSILLNAYSKAGLVEDADAL 849
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+ D+ AY +IK + + +AI +S L G P+ Y MI +F
Sbjct: 850 IHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAK 909
Query: 453 SGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
SGR + K+ + AGF+ D++ +++ +S
Sbjct: 910 SGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKS 945
>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1023
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G DP +V Y +LI E AL++V M+ N FD+ AY +IK + L
Sbjct: 596 GIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDP- 654
Query: 425 IRYF-SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
RY S++ E G P Y +I + G+ D+ E + G
Sbjct: 655 -RYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYG 700
>gi|307136025|gb|ADN33879.1| DNA-binding protein [Cucumis melo subsp. melo]
Length = 608
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
N + ++C A + +L+ E +F + + + Y+T+I K +
Sbjct: 409 NPNVEECMAAIVAWGKLKNIQEAEKIFDRVVKTWKRLSTKHYSTMIKVYGDSKMLTKGKE 468
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY-FSKLKEAGFCPTYDIYRDMIRIF 450
+V M S C D + V+KL+V ++ +A + F +K+ G P +D YR ++ +
Sbjct: 469 LVNQMAKSGCRIDPMIWDAVVKLYVEAGEVEKADSFLFKAVKQYGMKPLFDSYRTLMVHY 528
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G + + + +G+ V L+Q
Sbjct: 529 ARKGDVHNSEKIFHKIRQSGYPTHFGQFVTLVQ 561
>gi|449507432|ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1061
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 14/226 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G KGG + A + + AK G L+ Y +I L + + L D L +R L
Sbjct: 720 GLCKGGQMSEALDICVSAKTNGMKLNIICYNIVIKGLCLQS-RLIQAFQLFDSL-ERLGL 777
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
++ ++ R LF G P +Y +LI + + EA
Sbjct: 778 IPTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLIDGYIRIGQIEEAFK 837
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ + D + IK + D+ A+ +F + K G P + + +IR
Sbjct: 838 LLHELRTGAFNPDEFSVSSAIKAYCQKGDMEGALSFFFEFKNEGISPDFLGFLYLIRGLC 897
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELL-----QIEKESRIGT 492
A GR+ + RD+ +E + Q+V+EL+ +IE ES IG+
Sbjct: 898 AKGRMEEARDILRET------IQSQSVMELINKVDTEIEAES-IGS 936
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 21/205 (10%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K G L+ A+ L + K +D +YA LI + D + V LLDE+ R
Sbjct: 336 GFCKKGKLEEAFSLFEMVKGLEMEVDEFMYATLIDGCCRKGD-FDRVFGLLDEMETRG-- 392
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS-------GRDPTVVMYTTLIHSRLSEK 384
MK I V+ L W S G V+ Y+TL+H + E+
Sbjct: 393 ----------MKSSIVTYN-TVINGLCKWGRTSEADRLSKGLHGDVITYSTLLHGYIQEQ 441
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+E + D+ V+IK + A + ++ E G Y
Sbjct: 442 NITGIFETKRRLEDAGISLDVIMCNVLIKALFMVGAYEDAYILYKRMPEIGLAANSVTYH 501
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMA 469
+I + R+ + ++ E ++A
Sbjct: 502 TLINGYCNICRIDEAFEIFNEFKLA 526
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
+ + ++L L + NL+ ++KV R Q++ + + + ++G P + Y+
Sbjct: 23 WKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYS 82
Query: 375 TLIHSRLSEKKCR-EALTVVW--NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
TLI +C + + W M + C+ D Y +I ++ + A+ + +
Sbjct: 83 TLIS---CANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESV 139
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
K++G+ P Y M+R+F +G ++ + EM G + +VV + I R G
Sbjct: 140 KKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFD--EMKGSGIQPGSVVYNIMISCLGRAG 197
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R + G +F +G P V +T++ K E L + +M + D+
Sbjct: 195 RAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMR-QDLACDII 253
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y VIK+ + A +Y ++ E G P YR+MI ++ +G + + + +
Sbjct: 254 VYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQL 313
Query: 467 EMAGFKLDKQTVVELLQ 483
AG++ D + LLQ
Sbjct: 314 VEAGYQPDVMSYTSLLQ 330
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F H G P+VV Y+ L+ + R+A+ ++ M A C D+ Y V+I
Sbjct: 183 AVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAM 242
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
D+ A+ S L G P Y +++ S R + ++ AEMA K
Sbjct: 243 CNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEEL--FAEMASNK 297
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P ++ Y T+I + K EAL ++ M ++ D YR + + RAIR
Sbjct: 578 PDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRM 637
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+L++ G P Y D++ F + R D +G D+ T + LL+
Sbjct: 638 LCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLE 693
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 15/240 (6%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EATAKGFVKGGNLKLAWK 284
+D ++A T + A +V LE F + KG++ + GF+K A +
Sbjct: 367 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 426
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
L G + + I GK+ + K + L+ G D+ +
Sbjct: 427 LFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLA 486
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K G + G+ + +FH G P + YT +I K EA+ + ++M +NC+
Sbjct: 487 KSG----RLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCV 542
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ A +I A R F +LKE PT Y ++ GR K ++V
Sbjct: 543 PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL---AGLGREGKVKEV 599
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 47/278 (16%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL----KVPFKLENFVSLASKGVLE 267
P AL+ F A ++P + +E++ H + +V ++ + A+ G
Sbjct: 105 PAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFA 164
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A G G L+ A L V K+ G +L+ Y L+ Y LV + D
Sbjct: 165 AIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV---------YFLVKSGFD---- 211
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R+ L + + +M V GVV P+V Y+ L+ ++ K R
Sbjct: 212 REALEVYR-----VMMVD------GVV-------------PSVRTYSVLM---VAFGKRR 244
Query: 388 EALTVVW---NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ TV+W MEA ++ +Y + I++ A R +K++ G P +
Sbjct: 245 DVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHT 304
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I++ +GR++ +DV + + + K D+ T + LL
Sbjct: 305 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 342
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 327 QRDDLNLSQQDCTA-IMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
Q ++NL D T + G+ R K V L HS P ++ Y T++
Sbjct: 570 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 629
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+AL ++++M C+ DL +Y VI V + A F ++K+ P Y
Sbjct: 630 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLC 688
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQ 483
++ F+ G + + + K+ + G K D+ + L++
Sbjct: 689 TILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLME 728
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 277 GNLKLAWKLL-MVAKDGGRMLDPSIYAKLIL-ELGKNPDKYMLVMTLLDEL---GQRDDL 331
G L+LA++++ + KDG + PS+ IL E + + L DEL G R DL
Sbjct: 180 GKLELAFEVMDELLKDGCK---PSVITYTILIEATILEGRINEALELFDELVSRGLRPDL 236
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
I K G+ + V L + G +P VV Y L+ S L++ + +
Sbjct: 237 YTYNAIIRGICKEGMEDRALDFVRHL----SARGCNPDVVSYNILLRSFLNKSRWEDGER 292
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ +M S C ++ + ++I F + A+ +KE G P Y +I F
Sbjct: 293 LMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFC 352
Query: 452 ASGRL 456
GRL
Sbjct: 353 KEGRL 357
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 107/260 (41%), Gaps = 22/260 (8%)
Query: 224 KQPHLFPD-DRLLASTVEVLARH-----HELKVPFKLENFVSLASK-GVLEATA--KGFV 274
+QPH FP+ D A +++L R H + F LE+ VS K V+ T KGF
Sbjct: 51 RQPH-FPNLDNRDAHLMKLLNRSCRAGKHNESLYF-LESVVSKGFKPDVVLCTKLIKGFF 108
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG-KNPDKYMLVMTLLDELGQRDDLNL 333
NLK A +++ + + G DP +Y+ + G ++ + D + R
Sbjct: 109 NSRNLKKAMRVMEILETYG---DPDVYSYNAMISGFSKANQIDSANQVFDRMRSR---GF 162
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREAL 390
S T + +G L G +E F G P+V+ YT LI + + E + EAL
Sbjct: 163 SPDVVTYNIMIG-SLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEAL 221
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ + + DL Y +I+ RA+ + L G P Y ++R F
Sbjct: 222 ELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSF 281
Query: 451 MASGRLAKCRDVCKEAEMAG 470
+ R + K+ ++G
Sbjct: 282 LNKSRWEDGERLMKDMVLSG 301
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 355 ESLFHW--FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
ESL+ G P VV+ T LI + + ++A+ V+ +E D+ +Y +I
Sbjct: 80 ESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDP-DVYSYNAMI 138
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F N I A + F +++ GF P Y MI + G+L +V E G K
Sbjct: 139 SGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCK 198
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 43/119 (36%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P Y LI + E + A+ + M + CL D+ Y ++ A
Sbjct: 336 GLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLA 395
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ F KL E G PT Y M + G K ++ E G D+ T L+
Sbjct: 396 LDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLIS 454
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 99/265 (37%), Gaps = 41/265 (15%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKL 281
L PD V+ + +L + F + F S+ S G+ A G K G L+
Sbjct: 436 LLPDRVTYNILVDGFCKEGQLNMAFNI--FNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 493
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTL---------------LD 323
A +L G LD + LI ++GK D L + LD
Sbjct: 494 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLD 553
Query: 324 ELGQRDDLNLSQQDCTAIMKVGI---------------RLQKFGVVESLFHWFTHSGRDP 368
LG+ LN + +MK G+ R + + + +G P
Sbjct: 554 ALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSP 613
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
V YT +I+ + + EA T++++M + + Y V++K V + RA +
Sbjct: 614 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 673
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMAS 453
S + + G P IY ++ F+ S
Sbjct: 674 STMVKNGCQPNSHIYSALLSGFVLS 698
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 15/240 (6%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL------EATAKGFVKGGNLKLAWK 284
+D ++A T + A +V LE F + KG++ + GF+K A +
Sbjct: 457 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALE 516
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
L G + + I GK+ + K + L+ G D+ +
Sbjct: 517 LFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLA 576
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K G + G+ + +FH G P + YT +I K EA+ + ++M +NC+
Sbjct: 577 KSG----RLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCV 632
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ A +I A R F +LKE PT Y ++ GR K ++V
Sbjct: 633 PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL---AGLGREGKVKEV 689
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 47/278 (16%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL----KVPFKLENFVSLASKGVLE 267
P AL+ F A ++P + +E++ H + +V ++ + A+ G
Sbjct: 195 PAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFA 254
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A G G L+ A L V K+ G +L+ Y L+ Y LV + D
Sbjct: 255 AIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV---------YFLVKSGFD---- 301
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R+ L + + +M V GVV P+V Y+ L+ ++ K R
Sbjct: 302 REALEVYR-----VMMVD------GVV-------------PSVRTYSVLM---VAFGKRR 334
Query: 388 EALTVVW---NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ TV+W MEA ++ +Y + I++ A R +K++ G P +
Sbjct: 335 DVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHT 394
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I++ +GR++ +DV + + + K D+ T + LL
Sbjct: 395 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 432
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 327 QRDDLNLSQQDCT-AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
Q ++NL D T + G+ R K V L HS P ++ Y T++
Sbjct: 660 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 719
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+AL ++++M C+ DL +Y VI V + A F ++K+ P Y
Sbjct: 720 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLC 778
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQ 483
++ F+ G + + + K+ + G K D+ + L++
Sbjct: 779 TILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLME 818
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 355 ESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
++ WF +G P VV Y+T+I K EA+ + ++ + D Y +
Sbjct: 95 DAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTM 154
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
++LF I A+ F ++K +G P +Y MI +GR+ V +E E G
Sbjct: 155 VRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGV 214
Query: 472 KLDKQTVVELLQIEKESRIGTI 493
K + T+ ++ E SR G +
Sbjct: 215 KPNAVTLSTVM--ETYSRCGNV 234
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 3/138 (2%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDL 405
R + G +F G P V +T++ + E L V + + C D+
Sbjct: 195 RAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGVAC--DV 252
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y V+K+ S A +Y ++ E+G P YR+MI ++ G + +
Sbjct: 253 IVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQ 312
Query: 466 AEMAGFKLDKQTVVELLQ 483
AG+++D LLQ
Sbjct: 313 MVEAGYQIDVMAYTSLLQ 330
>gi|302795498|ref|XP_002979512.1| hypothetical protein SELMODRAFT_52562 [Selaginella moellendorffii]
gi|300152760|gb|EFJ19401.1| hypothetical protein SELMODRAFT_52562 [Selaginella moellendorffii]
Length = 419
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 9/218 (4%)
Query: 275 KGGNLKLAWKLLMVAKD-GGRMLDPSIYAKLILELGKNPDKY---MLVMTLLDELGQRDD 330
K G AWKL + K+ G D Y+ LI G D L + ++D G D
Sbjct: 108 KNGRRYAAWKLFLAMKEEDGISPDCVTYSILITNAGDGSDIAEPCRLFLEMMD-CGCSPD 166
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ + + K G Q F G+ +V ++T++I S + + A
Sbjct: 167 IVVHSSMVNLLFKCGDVRQTL----DFFKQMAQRGKPLSVAVFTSIIFSYVRSGRMDSAY 222
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ + + Y +I F ++D+ A F ++K F P YR M+ +
Sbjct: 223 LLFRGLRDVSGYVHQRIYNSLICGFANIDDVLHAFSLFKEMKANSFAPDQVTYRTMVALL 282
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+L + +D +E + G D T +L+ + E+
Sbjct: 283 ARHAKLFQAQDTLEEMKANGLTPDLVTYNKLMAMLGET 320
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A+ KVG R + + LF + G PT++ Y +I + + E+ +A + +ME S
Sbjct: 689 AMFKVGRRQE----AKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 744
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+C D +I++ + ++++A Y SK+ + G P +I +F +G+
Sbjct: 745 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGK 800
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDELG 326
G+ GN+K A LL + G ++P IY L + G+ D L D L
Sbjct: 549 GYCLVGNMKEAVGLLDSMESVG--VEPDIYTYNTLVDGYCKHGRIDDALTL---FRDMLH 603
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+R + L+ I+ + ++ V + +FH SG ++ Y T++
Sbjct: 604 KR--VTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCT 661
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EA ++ + + N FD+ + +VI+ + A F+ + G PT YR M
Sbjct: 662 DEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVM 721
Query: 447 I 447
I
Sbjct: 722 I 722
>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 9/193 (4%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG--KNPDKYMLVMTLLDEL 325
A + + GN+ +A KL A+ +DP ++ LI G N D + V + L
Sbjct: 251 AMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKAL 310
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
G + +L + T + +G R ++ ++++ T++G P+ Y L+ + +
Sbjct: 311 GVKPNLVIYN---TLLDAMG-RAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARY 366
Query: 386 CREALTVVWNME---ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+AL V M+ + NC+ D + +I ++ +S A + + EAGF P +
Sbjct: 367 AEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFV 426
Query: 443 YRDMIRIFMASGR 455
+I+ + + R
Sbjct: 427 LTSLIQCYGKANR 439
>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
Length = 548
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 1/141 (0%)
Query: 338 CTAIMKV-GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
CT ++ V RL F + W +G P VV Y+TLI S + EAL V+ M
Sbjct: 135 CTVLVGVYACRLHWFDAAYEVVRWMAANGVAPDVVTYSTLISGLCSAGRVAEALGVLDLM 194
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C + Y ++ + I A + AGF P+ Y ++ +
Sbjct: 195 LEEGCQPNAHTYTPILHAYCTSGMIHEAKDLLETMVAAGFAPSTATYNVLVEALCKACAF 254
Query: 457 AKCRDVCKEAEMAGFKLDKQT 477
+ + +E+ G+ D T
Sbjct: 255 EEVDKLLEESSAKGWTPDTIT 275
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNM--EASNCLFDLPAYRVVIKLFVALNDIS 422
G P V Y+TL+ +EKKC EA ++ M + NC D+ +Y VI F D+
Sbjct: 79 GCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVG 138
Query: 423 RAIRYFSKLKEAGFCP 438
+A F K+ + G P
Sbjct: 139 KAYTLFCKMLDHGIPP 154
>gi|440800964|gb|ELR21990.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 476
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 350 KFGVVESLFHWFT----HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G + F ++ G P + YT L+ + + + EA+ + ++ S ++
Sbjct: 197 KHGQFDQAFAYYAGLHARHGVKPDELTYTPLMQASIKRGRPDEAIELFDALKRSGLQPNV 256
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++++ N+ RA+ ++ G +Y D + + GR+ + DVC
Sbjct: 257 QHYSLLVQARAEKNEFERAVAQLDEMAAGGVEVDDRLYFDYAKALLDRGRVREMADVCAR 316
Query: 466 AEMAGFKLDKQTVVELLQIEKESRIGT 492
E G +LD++T + +++ R+GT
Sbjct: 317 MERVGQRLDRETGLRIVRF--LDRVGT 341
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 52/134 (38%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G LFH T G P VV Y ++IH+ + +A ++ M + D Y
Sbjct: 226 KVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN 285
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
+I + L +A+R F ++ G P + GR+ + R+
Sbjct: 286 TLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAK 345
Query: 470 GFKLDKQTVVELLQ 483
G KL+ + LL
Sbjct: 346 GHKLNIISYSTLLH 359
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
+ +LF+ G P ++ L++ REA+ + +M+ D+ Y VI
Sbjct: 370 MSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIH 429
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F + + A+ F+ + + G P + +Y+ +I+ F G L K ++ E G
Sbjct: 430 AFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGL 487
>gi|29367150|gb|AAO72718.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 532
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
+KLL + K G + +Y L+ L KN K +L+ E+ + +D+ + +A
Sbjct: 100 GFKLLQIMKTSGVAPNAVVYNTLLHALCKNG-KVGRARSLMSEMKEPNDVTFNIL-ISAY 157
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+Q ++E F G P VV T ++ +E + EAL V+ +E+
Sbjct: 158 CNEQKLIQSMVLLEKCFSL----GFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGG 213
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
D+ A ++K + AL + A R+F +++ G+ P + Y +I + G L D
Sbjct: 214 KVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALD 273
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + + ++FGV++ L + + PTVV Y +IH+ +EA+ V M+
Sbjct: 364 TTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQE 423
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D Y +I + + A+ + +++E G P Y M+ G+LA
Sbjct: 424 AGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLA 482
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 112/332 (33%), Gaps = 72/332 (21%)
Query: 166 FLISLARDIKGLDSH-KDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFC--WA 222
F SL DI + + EVLD C R+L K S+ V+ L A FC W
Sbjct: 327 FTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRMW- 385
Query: 223 QKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLA 282
H D S +EVL S LEA
Sbjct: 386 --NSHESGDRDAFISMLEVLCN-----------------SGKTLEAI------------- 413
Query: 283 WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQQDCT 339
LL + + G D +Y + LGK + + TL D++ G DL +
Sbjct: 414 -DLLHMMPEKGIDTDIGMYNMVFSALGK-LKQVSFISTLFDKMKASGIAPDLFTYNIMIS 471
Query: 340 AIMKVGIRLQKFGVVES-------------------------------LFHWFTHSGRDP 368
+ +VG+ + G+ E LF G DP
Sbjct: 472 SYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDP 531
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
V Y+TLI K A ++ M A C+ ++ Y +++ + A +++
Sbjct: 532 DVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHY 591
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
+K+ G P Y + R+ S R A+ R
Sbjct: 592 ETMKQQGLTPDSITYSILERLESRSQRTARIR 623
>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 426
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R + +++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGITPDLVAYNSMINVFGKAKLFKEARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P V Y+T++ + K EAL+V M NCL DL ++I ++
Sbjct: 101 LISEMRVAGVMPDTVSYSTILTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L+ A R F +++ G P Y ++R++
Sbjct: 161 QLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVY 194
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G V LF G P VV Y TLI+ A+ ++ +ME NC D+ Y
Sbjct: 144 KIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYT 203
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+I +++A FS++ G P+ Y +I
Sbjct: 204 SIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIH 242
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH G+ P V Y L+ ++ EA+ ++ +E SN D+ Y +VI
Sbjct: 395 ALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGM 454
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
++ A FS L G P Y MI G LA+ + E + G+
Sbjct: 455 CRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYS 511
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A++ + K + +F G DP V Y++LI +K+ AL V+ M +
Sbjct: 419 ALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLEN 478
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
+C ++ Y +I + A + ++E G P Y MI F SGR+ KC
Sbjct: 479 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKC 538
Query: 460 RDVCKEAEMAG 470
++ ++ G
Sbjct: 539 LELLQQMSSKG 549
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF +G P V +YTTLI S +A ME C ++ Y +I ++
Sbjct: 244 LFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYL 303
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+S+A + + G P Y +I +G++ K + +K+ K+
Sbjct: 304 KSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI--------YKIMKK 355
Query: 477 TVVELLQIEKESRI 490
VE+ ++ R+
Sbjct: 356 ENVEIPDVDMHFRV 369
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A+ KVG R + + LF + G PT++ Y +I + + E+ +A + +ME S
Sbjct: 618 AMFKVGRRQE----AKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 673
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+C D +I++ + ++++A Y SK+ + G P +I +F +G+
Sbjct: 674 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGK 729
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDELG 326
G+ GN+K A LL + G ++P IY L + G+ D L D L
Sbjct: 478 GYCLVGNMKEAVGLLDSMESVG--VEPDIYTYNTLVDGYCKHGRIDDALTL---FRDMLH 532
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+R + L+ I+ + ++ V + +FH SG ++ Y T++
Sbjct: 533 KR--VTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCT 590
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EA ++ + + N FD+ + +VI+ + A F+ + G PT YR M
Sbjct: 591 DEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVM 650
Query: 447 I 447
I
Sbjct: 651 I 651
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 97/270 (35%), Gaps = 45/270 (16%)
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA------KGFVKGGNLK 280
H FPD + ++ ++ +V +E F ++ +G++ T +G + G+
Sbjct: 186 HCFPDVVTYNTLIKGFCKYK--RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 243
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340
+A ++ M+ + P M TLLD L +
Sbjct: 244 MAQEIFK------EMVSDGV-----------PPNIMTYNTLLDGLCKNG----------- 275
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
+L+K VV F + S +PT+ Y +I K + + N+
Sbjct: 276 ------KLEKAMVV---FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 326
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
D+ AY +I F A F ++KE G P Y +IR + G
Sbjct: 327 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 386
Query: 461 DVCKEAEMAGFKLDKQTVVELLQIEKESRI 490
++ KE GF D T+ + + + R+
Sbjct: 387 ELIKEMRSCGFAGDASTIGLVTNMLHDGRL 416
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 43/110 (39%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS EA+ V M+ + C D
Sbjct: 493 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 552
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y +I + + A+ + +++ G P Y +I +G L
Sbjct: 553 TYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHL 602
>gi|357140650|ref|XP_003571877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Brachypodium distachyon]
Length = 753
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 318 VMTLLDELGQRDDLNLSQQDC---TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
M +LDEL L Q D A++ + + +++ G +P Y
Sbjct: 450 AMEVLDEL----SLEGCQPDVVTYNALISASCKADRLKDAKTILTRLIAEGLEPNSTTYC 505
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
L+HS ++++ E ++ +M+ +NC D+ AY + I F + +AI K+
Sbjct: 506 ILLHSLCNKRRWAEVCDLLAHMKRANCEPDVTAYNIFINYFCKYGHLDQAIDVLEKMVSD 565
Query: 435 GFCPTYDIYRDMIRIFMASG 454
CP Y ++ G
Sbjct: 566 KCCPDIVTYNTLLNAISKEG 585
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 10/231 (4%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGG 277
+ L PD+ + ++ L + ++ L F SL KG+ G+ K G
Sbjct: 476 NESGLVPDEWTYSVFIDTLCKRGLVEEARSL--FESLKEKGIKANEVIYSTLIDGYCKVG 533
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
+ LL G + + Y LI G +K LL ++ + D+ +
Sbjct: 534 KVSDGRFLLDKMLSAGCVPNSITYNSLID--GYCKEKNFKEARLLVDIMIKRDIEPAADT 591
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
T ++ ++ +F +F +G P V +YT IH+ S + ++A ++ M
Sbjct: 592 YTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMN 651
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A + D Y + I + I A ++ E G P+Y Y +I+
Sbjct: 652 AKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIK 702
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 18/229 (7%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G K G+L A+KLL + + G + D Y+ I L K ++ + L E G +
Sbjct: 458 GQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKA 517
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + KVG K L +G P + Y +LI EK +EA
Sbjct: 518 NEVIYSTLIDGYCKVG----KVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEA 573
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+V M + Y ++I + ++ +A F ++ G P IY I
Sbjct: 574 RLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHA 633
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQ-----TVVELLQIEKESRIGTI 493
+ + GRL K+AE+ K++ + T++ L I+ R G+I
Sbjct: 634 YCSHGRL-------KDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSI 675
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 129/340 (37%), Gaps = 20/340 (5%)
Query: 165 SFLISLARDIKGLDSHKDVAEVLD--KC-GRFLRKGSLSFTVRELGHMNLPERALQTFCW 221
S SL + L K + +VLD KC R + + + G +LPE+A+ F
Sbjct: 91 STFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAVDLFDR 150
Query: 222 AQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV--------LEATAKGF 273
+ + S + V+ + + N V + +KGV K
Sbjct: 151 MACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHV-IGAKGVSISPNVLTFNLVIKAM 209
Query: 274 VKGGNLKLAWKLLMVAKDGG-RMLDPSIYAKLILELG-KNPDKYMLVMTLLDELGQRDDL 331
K G L + V +D R +P +Y L G D+ ++LLDE+ Q D
Sbjct: 210 CKVG---LVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEM-QIDGC 265
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
S ++ + L G P V Y TLIH + K +A++
Sbjct: 266 FPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAIS 325
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ M +S C+ ++ Y +I V + ++E G+C +Y +I
Sbjct: 326 LLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLF 385
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
G+ + + KE + G++L+ T+V I+ R G
Sbjct: 386 KEGKSQEAMHLFKEMTVKGYELN--TIVYSAVIDGLCRDG 423
>gi|222622668|gb|EEE56800.1| hypothetical protein OsJ_06387 [Oryza sativa Japonica Group]
Length = 540
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 350 KFGVVESLFH-WFT--HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+FG V+ + H W T G P V Y LI + + EAL V M
Sbjct: 261 RFGRVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTM 320
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
AY +I F+++ + R I+Y+ + + P D YR MIR F+ ++A
Sbjct: 321 AYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVA 371
>gi|218190552|gb|EEC72979.1| hypothetical protein OsI_06882 [Oryza sativa Indica Group]
Length = 541
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 350 KFGVVESLFH-WFT--HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+FG V+ + H W T G P V Y LI + + EAL V M
Sbjct: 262 RFGRVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTM 321
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
AY +I F+++ + R I+Y+ + + P D YR MIR F+ ++A
Sbjct: 322 AYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVA 372
>gi|115445705|ref|NP_001046632.1| Os02g0304800 [Oryza sativa Japonica Group]
gi|113536163|dbj|BAF08546.1| Os02g0304800 [Oryza sativa Japonica Group]
Length = 617
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 350 KFGVVESLFH-WFT--HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+FG V+ + H W T G P V Y LI + + EAL V M
Sbjct: 261 RFGRVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTM 320
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
AY +I F+++ + R I+Y+ + + P D YR MIR F+ ++A
Sbjct: 321 AYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVA 371
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G V LF G P VV Y TLI+ A+ ++ +ME NC D+ Y
Sbjct: 153 KIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYT 212
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+I +++A FS++ G P+ Y +I
Sbjct: 213 SIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIH 251
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH G+ P V Y L+ ++ EA+ ++ +E SN D+ Y +VI
Sbjct: 404 ALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGM 463
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
++ A FS L G P Y MI G LA+ + E + G+
Sbjct: 464 CRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYS 520
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 15/186 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI------------RLQKFGVVES---LFHWFTHS 364
TL+ L Q D +++Q+ ++ G+ L K G +E +F + S
Sbjct: 436 TLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 495
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
+PT+ Y +I K + + N+ D+ AY +I F A
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F ++KE G P Y +IR + G ++ KE GF D T+ + +
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM 615
Query: 485 EKESRI 490
+ R+
Sbjct: 616 LHDGRL 621
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V + TLIH K EA+ ++ M A C DL Y VV+ D
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A +K+++ P IY +I + + ++ KE E G + + T L+
Sbjct: 240 AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P VV+YT+L+H EA V M+ + ++ Y +VI I+RA
Sbjct: 212 EPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHD 271
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
FS++ + G P + +++R+ + +GR K V + + G D T L++
Sbjct: 272 VFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIE 328
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V + G+ + GN+ A ++ K G + Y+ +I L ++ + D
Sbjct: 217 VYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ----ITRAHDV 272
Query: 325 LGQRDDLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
+ D+ T +M+V ++ + V +++ G P + Y LI S
Sbjct: 273 FSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 332
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ EA+ ++ N C + ++ + L D++ A R F+K+K+ P
Sbjct: 333 DDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVT 391
Query: 443 YRDMIRIF 450
Y ++R+F
Sbjct: 392 YNILMRMF 399
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+ G+ + +FH G P + YT +I K EA+ + ++M +NC+ D+ A
Sbjct: 455 RLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVN 514
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+I A R F +LKE PT Y ++ GR K ++V
Sbjct: 515 SLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL---AGLGREGKVKEV 564
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 47/278 (16%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL----KVPFKLENFVSLASKGVLE 267
P AL+ F A ++P + +E++ H + +V ++ + A+ G
Sbjct: 70 PAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFA 129
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A G G L+ A L V K+ G +L+ Y L+ Y LV + D
Sbjct: 130 AIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV---------YFLVKSGFD---- 176
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R+ L + + +M V GVV P+V Y+ L+ ++ K R
Sbjct: 177 REALEVYR-----VMMVD------GVV-------------PSVRTYSVLM---VAFGKRR 209
Query: 388 EALTVVW---NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ TV+W MEA ++ +Y + I++ A R +K++ G P +
Sbjct: 210 DVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHT 269
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I++ +GR++ +DV + + + K D+ T + LL
Sbjct: 270 VLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 307
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 327 QRDDLNLSQQDCTA-IMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
Q ++NL D T + G+ R K V L HS P ++ Y T++
Sbjct: 535 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 594
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+AL ++++M C+ DL +Y VI V + A F ++K+ P Y
Sbjct: 595 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLC 653
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQ 483
++ F+ G + + + K+ + G K D+ + L++
Sbjct: 654 TILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLME 693
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 116/322 (36%), Gaps = 36/322 (11%)
Query: 169 SLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHL 228
SL + L +A LD L + +E +R+L+ F + Q+Q
Sbjct: 78 SLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWC 137
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288
P++ + + +L R L LE F + S+GV +
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKC--LEVFDEMPSQGVSRSVFS----------------- 178
Query: 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR- 347
Y LI G+N +Y + LLD + + + ++ S ++ R
Sbjct: 179 ------------YTALINAYGRN-GRYETSLELLDRM-KNEKISPSILTYNTVINACARG 224
Query: 348 -LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
L G++ LF H G P +V Y TL+ + EA V M + DL
Sbjct: 225 GLDWEGLL-GLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLT 283
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +++ F L + + ++ G P Y ++ + SG + + V +
Sbjct: 284 TYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343
Query: 467 EMAGFKLDKQTVVELLQIEKES 488
+ AG + T LL + +S
Sbjct: 344 QAAGCTPNANTYSVLLNLFGQS 365
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 121/305 (39%), Gaps = 55/305 (18%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK 271
P+ A + F WA +Q + ++V A E+K ++L F +A+KG L +++
Sbjct: 159 PKLAYKFFIWAGQQEGYQHSTSMYNLVMKVFAECGEVKAMWRL--FEEMAAKG-LPVSSR 215
Query: 272 GF-------VKGG---------------NLK--------LAWKLLMVAKDGGRMLDPSIY 301
F VK G N + + + LL + + L ++
Sbjct: 216 TFHLLICASVKVGLRRRLVERFIRSSTFNYRPFRNAFNAILYTLLTIEQ---YSLIEWVH 272
Query: 302 AKLILELGKNPD----------KYML-----VMTLLDELGQRDDLNLSQQDCTAIMKVGI 346
K+ILE G +PD KYML LLDE+G ++ L ++ V
Sbjct: 273 EKMILE-GYSPDVLTYNVVLRAKYMLGKLDQFHQLLDEMG-KNGLTPDLHTYNLLLHVLG 330
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN-MEASNCLFDL 405
+ K +L ++ + G P V+ +T LI L EA ++ M C D+
Sbjct: 331 KGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDG-LGRAGNLEACRYFFDEMMKKGCDPDV 389
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y V+I +VA + A R+F + G P Y MI+ A G K + K+
Sbjct: 390 VCYTVMIASYVAAGEFEEAQRFFDDMLMRGQLPNVYTYNSMIQGLCAVGEFDKAFTMLKD 449
Query: 466 AEMAG 470
+ G
Sbjct: 450 MDSHG 454
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 19/182 (10%)
Query: 301 YAKLILELGKN---PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR---------- 347
+ +L+ E+GKN PD + + LL LG+ D + + VG R
Sbjct: 303 FHQLLDEMGKNGLTPDLHTYNL-LLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLI 361
Query: 348 --LQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
L + G +E+ ++F G DP VV YT +I S ++ + EA +M L
Sbjct: 362 DGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQL 421
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
++ Y +I+ A+ + +A + G P + +Y ++R +G+ + +V
Sbjct: 422 PNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRLRNAGKDTQANNV 481
Query: 463 CK 464
K
Sbjct: 482 IK 483
>gi|326520353|dbj|BAK07435.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 652
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 351 FGVVESLFHWFTHSGRD------PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
FG LF + D P VV Y T+I + +A ++V M+AS +
Sbjct: 347 FGEAVHLFGLMYSTASDGGTVVRPNVVTYNTMIAIHGKALEDDKAGSLVQQMQASGIQPN 406
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
Y V+ ++V + RA + F KL+E+G +Y+ M+ + +G +++ + + +
Sbjct: 407 AVTYSTVLSIWVKAGKLDRAAKLFDKLRESGTEMDPVLYQTMVVAYERAGLVSQSKRLLR 466
Query: 465 EAEMAGFKLDKQTVVELL 482
E + K+T +++L
Sbjct: 467 ELRHPDQAIPKETAMKIL 484
>gi|449503243|ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g76280-like [Cucumis sativus]
Length = 806
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 306 LELGKNPDKY--MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363
+++GK+ +Y +M LL LG T MK + LQ + E+LF++
Sbjct: 504 MDMGKHGIQYSHFSMMNLLKALG------------TEGMKKEV-LQYLNLAENLFYYNNT 550
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
S P +Y T++H + K+ A+ + NM+ S D + +++ + +
Sbjct: 551 SLGMP---VYNTVLHFLVDSKETHMAIELFNNMKRSGFFPDAATFEMMLDCCSVIGCLKS 607
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A S + +GFCP Y +++I + R ++ +A G +LD
Sbjct: 608 AFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELD 658
>gi|356525958|ref|XP_003531588.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic-like [Glycine max]
Length = 630
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS-EKKCREALTVVWNM 396
C +++ I+ KF +LF G P +V YTTL+ + E +AL ++ +
Sbjct: 143 CNSVLSCLIKKAKFNSALNLFQQMKLDGLLPDLVTYTTLLAGCIKIENGYAKALELIQEL 202
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + D Y ++ + + A YF+++K+ G P Y +I + A G
Sbjct: 203 QHNKLQMDGVIYGTIMAVCASNTKWEEAEYYFNQMKDEGHTPNVYHYSSLINAYSACGNY 262
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELLQI 484
K + ++ + G +K + LL++
Sbjct: 263 KKADMLIQDMKSEGLVPNKVILTTLLKV 290
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+SL H F +P VV+YT+L+H +A V +M+ + ++ Y +VI
Sbjct: 272 DSLKHRF-----EPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDS 326
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
I+RA FS++ +AG P + ++R+ + +GR K V + + G D
Sbjct: 327 LCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPAD 386
Query: 475 KQTVVELLQIEKESR 489
T+ IE R
Sbjct: 387 --TISYNFIIESHCR 399
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V + TLIH K EA+ ++ M A C DL Y VV+ D
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A +K+++ P IY +I + ++ KE E G + + T L+
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 97/270 (35%), Gaps = 45/270 (16%)
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA------KGFVKGGNLK 280
H FPD + ++ ++ +V +E F ++ +G++ T +G + G+
Sbjct: 391 HCFPDVVTYNTLIKGFCKYK--RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340
+A ++ M+ + P M TLLD L +
Sbjct: 449 MAQEIFK------EMVSDGV-----------PPNIMTYNTLLDGLCKNG----------- 480
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
+L+K VV F + S +PT+ Y +I K + + N+
Sbjct: 481 ------KLEKAMVV---FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
D+ AY +I F A F ++KE G P Y +IR + G
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 461 DVCKEAEMAGFKLDKQTVVELLQIEKESRI 490
++ KE GF D T+ + + + R+
Sbjct: 592 ELIKEMRSCGFAGDASTIGLVTNMLHDGRL 621
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
++F H G P+VV Y+ L+ + E ++A+ ++ M + C D+ Y V+I
Sbjct: 181 AVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAM 240
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ D+ A++ + L G P Y +++ +S R
Sbjct: 241 CSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSER 280
>gi|449443982|ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g76280-like [Cucumis sativus]
Length = 834
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 306 LELGKNPDKY--MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363
+++GK+ +Y +M LL LG T MK + LQ + E+LF++
Sbjct: 532 MDMGKHGIQYSHFSMMNLLKALG------------TEGMKKEV-LQYLNLAENLFYYNNT 578
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
S P +Y T++H + K+ A+ + NM+ S D + +++ + +
Sbjct: 579 SLGMP---VYNTVLHFLVDSKETHMAIELFNNMKRSGFFPDAATFEMMLDCCSVIGCLKS 635
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
A S + +GFCP Y +++I + R ++ +A G +LD
Sbjct: 636 AFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELD 686
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 92/258 (35%), Gaps = 45/258 (17%)
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA------KGFVKGGNLK 280
H FPD + ++ ++ +V +E F ++ +G++ T +G + G+
Sbjct: 1005 HCFPDVVTYNTLIKGFCKYK--RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 1062
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340
+A ++ M+ + P M TLLD L +
Sbjct: 1063 MAQEIFK------EMVSDGV-----------PPNIMTYNTLLDGLCKNG----------- 1094
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
+L+K VV F + S +PT+ Y +I K + + N+
Sbjct: 1095 ------KLEKAMVV---FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 1145
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
D+ AY +I F A F ++KE G P Y +IR + G
Sbjct: 1146 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 1205
Query: 461 DVCKEAEMAGFKLDKQTV 478
++ KE GF D T+
Sbjct: 1206 ELIKEMRSCGFAGDASTI 1223
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V + TLIH K EA+ ++ M A C DL Y VV+ D
Sbjct: 794 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 853
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
A +K+++ P IY +I + ++ KE E G +
Sbjct: 854 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 902
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+A++ ++ K + LF DP +V Y++LI+ + EA + M +
Sbjct: 367 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS 426
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
CL D+ +Y +I F + ++ F ++ + G Y +I+ F +G + K
Sbjct: 427 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 486
Query: 459 CRDVCKEAEMAGFKLDKQTVVELL 482
++ + + G D T LL
Sbjct: 487 AQEFFSQMDFFGISPDIWTYNILL 510
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 2/200 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG K G ++ A +L KD G + P + IL G + ++ + E
Sbjct: 292 KGLFKAGMVEDAENVLKEMKDLGFV--PDAFTFSILFDGYSSNEKAEAALGVYETAVDSG 349
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ ++ C+ ++ + K E + G P V+Y T+I + A
Sbjct: 350 VKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGAR 409
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ ME D AY +I+ F L ++ A + +K+K G P+ + Y +I +
Sbjct: 410 MKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGY 469
Query: 451 MASGRLAKCRDVCKEAEMAG 470
KC D+ KE E G
Sbjct: 470 GRKYEFDKCFDILKEMEDNG 489
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 99/265 (37%), Gaps = 41/265 (15%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKL 281
L PD V+ + +L + F + F S+ S G+ A G K G L+
Sbjct: 413 LLPDRVTYNILVDGFCKEGQLNMAFNI--FNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 470
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTL---------------LD 323
A +L G LD + LI ++GK D L + LD
Sbjct: 471 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLD 530
Query: 324 ELGQRDDLNLSQQDCTAIMKVGI---------------RLQKFGVVESLFHWFTHSGRDP 368
LG+ LN + +MK G+ R + + + +G P
Sbjct: 531 ALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSP 590
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
V YT +I+ + + EA T++++M + + Y V++K V + RA +
Sbjct: 591 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 650
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMAS 453
S + + G P IY ++ F+ S
Sbjct: 651 STMVKNGCQPNSHIYSALLSGFVLS 675
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P VV+YT+L+H EA V M+ + ++ Y +VI I+RA
Sbjct: 247 EPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHD 306
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
FS++ + G P + +++R+ + +GR K V + + G D T L++
Sbjct: 307 VFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIE 363
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V + G+ + GN+ A ++ K G + Y+ +I L ++ + D
Sbjct: 252 VYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ----ITRAHDV 307
Query: 325 LGQRDDLNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
+ D+ T +M+V ++ + V +++ G P + Y LI S
Sbjct: 308 FSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 367
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ EA+ ++ N C + ++ + L D++ A R F+K+K+ P
Sbjct: 368 DDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVT 426
Query: 443 YRDMIRIF 450
Y ++R+F
Sbjct: 427 YNILMRMF 434
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 51/126 (40%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R+ + E + +G P+ + Y L+++ E ++A+ ME +
Sbjct: 337 RVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRI 396
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
+ VI F ++ A + ++ E G PT + Y +I + G +C + E
Sbjct: 397 TFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEM 456
Query: 467 EMAGFK 472
+ AG K
Sbjct: 457 DKAGIK 462
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V+ Y +LI+ ++K +A V+ +M + Y ++I+ +L+ +
Sbjct: 459 AGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKD 518
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
A R+F ++ ++G T Y +I +GR+ K D+ +MAG
Sbjct: 519 AFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLF--LQMAG 563
>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
Length = 815
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 2/177 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF + G LK AW+ + K +D Y ++ G + + +G+
Sbjct: 199 RGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGE--G 256
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ S A ++V + S+F G P Y +I + +A+
Sbjct: 257 VLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAM 316
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ M+ C ++ Y VVI+ F +I + + F K+ +A P D Y +I
Sbjct: 317 EFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILI 373
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
VV YTT++H + R+A V M L + Y I++ +++ AI F
Sbjct: 226 VVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFE 285
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
++ G+ P Y +IR GR+ K
Sbjct: 286 EMLRKGYMPNSTTYNVVIRGLCHVGRMEKA 315
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V++YT L+ EA V M+ + ++ Y +VI I+RA
Sbjct: 248 EPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHD 307
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
F+++ +AG P Y ++RI + +GR K V + + G + D T L++
Sbjct: 308 VFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIE 364
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 3/176 (1%)
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
V+ + +D + S + ++ +++ F + + + TV ++ L+
Sbjct: 130 VLAFFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILM 189
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ EA+ ME NC D A+ ++I + S A +F LK+ F
Sbjct: 190 RRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDK-FE 248
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
P +Y +++R + +G +++ V E ++AG K + T + I+ R G I
Sbjct: 249 PDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYS--IVIDSLCRCGQI 302
>gi|357140623|ref|XP_003571864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Brachypodium distachyon]
Length = 751
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 6/188 (3%)
Query: 297 DPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
D + A L+ GK P + + + L+ ELG + + A++K + + +
Sbjct: 175 DEATVAALVAAYGKARIPQEAVKLFRLMPELG----ITRTALSYNAVLKAILCRGREAMA 230
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+++ G P + Y TLI +K A+ V +M+ D+ Y +I
Sbjct: 231 RRIYNAMIADGVAPDLSTYNTLIWGFGLSEKMEAAVRVFGDMKGHGVTPDVTTYNNLINA 290
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+V D+ A + F ++ AGF Y MI+ ++ + ++ + + KE G +
Sbjct: 291 WVRNGDLESARKVFDEMPGAGFERNSVSYNVMIKGYVEAKKVEEAVGLFKEMGEKGLRSS 350
Query: 475 KQTVVELL 482
++T L+
Sbjct: 351 EKTFAALM 358
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K+ + +F SG P Y +L+ + E V +M + + + DL +
Sbjct: 320 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFS 379
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++ LF ++ +A+ YF+ +KEAG P IY +I+ + G ++ ++ E
Sbjct: 380 SMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ 439
Query: 470 GFKLDKQTVVELLQ 483
G +D T +L
Sbjct: 440 GCAMDVVTYNTILH 453
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 29/233 (12%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG K G K A +LL + G + D Y LI K + LLDE +
Sbjct: 344 KGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALI--------KGYCDLGLLDE-AKSLH 394
Query: 331 LNLSQQDCTA------IMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
L +S+ DC + I+ G+ R G + +F+ G P+VV + LI
Sbjct: 395 LEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKA 454
Query: 384 KKCREALTVVWNME-------------ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
+A + + ME +N + D + + +++ I +A +
Sbjct: 455 GNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQ 514
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
L ++GF P Y +I F +G + + KE ++ G D T L+
Sbjct: 515 LTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLIN 567
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 83/229 (36%), Gaps = 29/229 (12%)
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVM 319
+K KGF + G L+ AW + K G + PD Y V+
Sbjct: 243 TKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSN-----------DENCKPDVVSYTTVL 291
Query: 320 TLLDELGQRDDL-----NLSQQDC-------TAIMKVGIRLQKFGVVESLFHWFTHSGRD 367
L GQ D +S + C A+++V + ++F G
Sbjct: 292 HGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYI 351
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV YT LI K A+ ++ M++ C ++ Y V+I+ + +I + +
Sbjct: 352 PNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDL 411
Query: 428 FSKLKEAGFC-PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
F + + C P D Y +I R D+ A M +D+
Sbjct: 412 FETMSKGEECLPNQDTYNIIISAMFVRKR---AEDMAVAARMVVEMVDR 457
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV YTT++H + +A V M C Y +I++ ++ A+
Sbjct: 282 PDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAV 341
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
F + G+ P Y +IR +G++ + + + G + + QT L++ E
Sbjct: 342 FDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLE 401
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+SL H F +P V++YT+L+H +A V +M+ + ++ Y +VI
Sbjct: 237 DSLKHKF-----EPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDS 291
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
I+RA FS++ +AG P + ++R+ + +GR K V + + G D
Sbjct: 292 LCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAAD 351
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 46/118 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
F G P V Y L+ + +EAL+V+ +M + C + Y ++ F
Sbjct: 144 FFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFC 203
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
++ RA R ++E G P + ++ +GR+ R V E G D
Sbjct: 204 RAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPD 261
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F T G P VV +T+LIH A+ +V M + + +I F
Sbjct: 283 SVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGF 342
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ A+ ++++ P+ Y +I + GR+ + R++ +E E G K D
Sbjct: 343 CKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDV 402
Query: 476 QTVVELLQ 483
T +L
Sbjct: 403 VTYSTILS 410
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+VV Y LI+ + EA +V MEA D+ Y ++ + D A +
Sbjct: 365 PSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQL 424
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
++ E G P Y +IR+ RL + K G + D+ T L+
Sbjct: 425 NQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLI 479
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 99/265 (37%), Gaps = 41/265 (15%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKL 281
L PD V+ + +L + F + F S+ S G+ A G K G L+
Sbjct: 370 LLPDRVTYNILVDGFCKEGQLNMAFNI--FNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 427
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTL---------------LD 323
A +L G LD + LI ++GK D L + LD
Sbjct: 428 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLD 487
Query: 324 ELGQRDDLNLSQQDCTAIMKVGI---------------RLQKFGVVESLFHWFTHSGRDP 368
LG+ LN + +MK G+ R + + + +G P
Sbjct: 488 ALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSP 547
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
V YT +I+ + + EA T++++M + + Y V++K V + RA +
Sbjct: 548 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIV 607
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMAS 453
S + + G P IY ++ F+ S
Sbjct: 608 STMVKNGCQPNSHIYSALLSGFVLS 632
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 17/206 (8%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR----- 347
GR D S + + +LE+G P+ + +D L +R + + ++ G++
Sbjct: 222 GRFKDVSEFFRRMLEMGTPPN-VVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYT 280
Query: 348 -------LQKFGVVESLFHWF----THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
L K G E F F S P V YT +I E K A ++ M
Sbjct: 281 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 340
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ Y +I RA +K+K+ GF P Y +I F G++
Sbjct: 341 VEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI 400
Query: 457 AKCRDVCKEAEMAGFKLDKQTVVELL 482
+ V + A G K DK T L+
Sbjct: 401 QEAYKVLRMATSQGLKFDKITYTILI 426
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 1/156 (0%)
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R +L CT +++ +F V F G P VV YT I + +
Sbjct: 201 RYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVK 260
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDM 446
+A V+ M ++ + +I + RA R F KL K + + P Y M
Sbjct: 261 QAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVM 320
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
I + G+LA+ + G K + T L+
Sbjct: 321 IGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 356
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 7/161 (4%)
Query: 314 KYMLVMTLLDE---LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
K++ V L DE G R D C+A+++ L+ F + W +G D ++
Sbjct: 205 KFITVWELFDESVNAGVRPD----PYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSI 260
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V Y LIH + EA+ V ++ D+ Y ++ F L I+ +
Sbjct: 261 VTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDE 320
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ E GF PT ++ G++ ++ + GF
Sbjct: 321 MVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGF 361
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 350 KFG---VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
KFG ESLF T+ G +PT +T+LI + + ++A + M + ++
Sbjct: 447 KFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVY 506
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
+ +I + N ++ A F +L E PT Y +I + G++ K ++ ++
Sbjct: 507 TFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDM 566
Query: 467 EMAGFKLDKQT 477
G D T
Sbjct: 567 HQKGLVPDTYT 577
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 50/127 (39%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L++ +G P V +T LI S K EA + + Y V+I+ +
Sbjct: 492 LYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYC 551
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
I +A + + G P YR +I ++GR++K +D + KL++
Sbjct: 552 RDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEM 611
Query: 477 TVVELLQ 483
LL
Sbjct: 612 CYSALLH 618
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 50/130 (38%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
V LF G +P Y LI S S+ K EAL ++ ME S C + Y +I
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F N A F +++ G Y +I S R+ + + M G K
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537
Query: 473 LDKQTVVELL 482
DK T LL
Sbjct: 538 PDKYTYNSLL 547
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 87/227 (38%), Gaps = 32/227 (14%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI--LELGKNPDKYMLVMTLLDELGQR 328
KG K G LK A ++ + G D Y LI N K + + + +LG +
Sbjct: 460 KGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLK 519
Query: 329 DDLNLSQQDCTAIMKVGIRLQK--FG------------VVESLFHWFTHSGR-------- 366
+N + K GI+L++ F V ++ H + +G
Sbjct: 520 PTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQ 579
Query: 367 --------DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
P Y +LI L E K E +V +M+A + + Y ++I+ L
Sbjct: 580 KEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDL 639
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
D + A ++ ++ E GF P I ++ GRL + + +C E
Sbjct: 640 KDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSE 686
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
RL F + +G P V+ Y +LI+ + K EA V+ +M L +
Sbjct: 359 RLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNAN 418
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y ++I + + A+R+F ++ + G T Y +I+ G+L KEA
Sbjct: 419 IYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKL-------KEA 471
Query: 467 E 467
E
Sbjct: 472 E 472
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 40/105 (38%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +Y LI + K REAL M + + Y +IK + + A
Sbjct: 415 PNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEM 474
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F + G CP Y +I + +G KC ++ + + G K
Sbjct: 475 FFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLK 519
>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 602
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 45/261 (17%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYM---LVMTLLDELGQ 327
+ F + A+++L + + G + KLI K + + LV T++ + +
Sbjct: 235 QAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVK-NR 293
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D+ Q+ K + LQ F V +L G P +VMYTTLIH +
Sbjct: 294 NPDIFTYQEIINGFCKNWMTLQAFEVFNAL----KDRGYAPDMVMYTTLIHGFCKMGQLE 349
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF------CPT-- 439
+A + + M L + +Y +I F + ++ A++ + K+ ++G+ C T
Sbjct: 350 DASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLI 409
Query: 440 ------------YDIYRDM---------------IRIFMASGRLAKCRDVCKEAEMAGFK 472
YD +R+M I+ F G++ + D+ KE + G +
Sbjct: 410 LGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQ 469
Query: 473 LDKQTVVELLQIEKESRIGTI 493
+ L+Q K ++G++
Sbjct: 470 PSTSSYAHLIQ--KLCQLGSV 488
>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g14820, mitochondrial; Flags: Precursor
gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 146/392 (37%), Gaps = 81/392 (20%)
Query: 101 EELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLASSRAS----- 155
EE+ +LF I YR+ +PLPH ++ L+ + SS S
Sbjct: 49 EEVRFSGALFSRMIHSSTYHPYRQ----IPLPHSVQLLDASLGCRGFSSGSSNVSDGCDE 104
Query: 156 --------------ICKQVYKNPSFLISLARDIKGLDS-HKDVAEVLDKCGRFLRKGSLS 200
C + NP + + + I L + +++ VLD+ L +
Sbjct: 105 EVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIV 164
Query: 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL 260
+ H P A + FCWA ++ D R S + +LA+ + E VS+
Sbjct: 165 EVLERFRHARKP--AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF------ETMVSV 216
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT 320
+ E KG + +A K AK+ + + I EL K + V T
Sbjct: 217 ----LEEMGTKGLLTMETFTIAMKAFAAAKERKKAVG-------IFELMKKYKFKIGVET 265
Query: 321 ---LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
LLD LG+ K+G Q + + L FT P ++ YT L+
Sbjct: 266 INCLLDSLGR--------------AKLGKEAQV--LFDKLKERFT-----PNMMTYTVLL 304
Query: 378 HSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
+ + EA +WN + L D+ A+ V+++ + S AI+ F +K G
Sbjct: 305 NGWCRVRNLIEA-ARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 363
Query: 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
CP Y MI RD CK++ M
Sbjct: 364 CPNVRSYTIMI------------RDFCKQSSM 383
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 9/202 (4%)
Query: 259 SLASKGV-LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDK 314
LA+ GV A G + G LK A ++L +D G +D Y LI ++GK +
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEA 444
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
+++ ++ +R N+ TA+ + L H G + + Y
Sbjct: 445 FLVHNKMVQ---KRVTPNVVTY--TALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYN 499
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
+LI+ +A+ + +M+ + D+ Y +I ++ RA ++ +
Sbjct: 500 SLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK 559
Query: 435 GFCPTYDIYRDMIRIFMASGRL 456
G PT Y ++ F SGR+
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGRV 581
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 18/198 (9%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL--GKNPDKYMLVMTLLDELGQR 328
G K GNL+ A + ++ + G D Y +I L K D+ +LL E+
Sbjct: 503 NGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR---AHSLLQEM--- 556
Query: 329 DDLNLSQQDCTAIMKVGIRLQKF---GVVES---LFHWFTHSGRDPTVVMYTTLIHSRLS 382
L + I+ + + F G VE L W P Y +L+
Sbjct: 557 ----LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
EK + + M + + + Y ++IK ++ A+ + S++ E GF T
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672
Query: 443 YRDMIRIFMASGRLAKCR 460
Y +IR+ + + R
Sbjct: 673 YNALIRLLNKKKKFTEAR 690
>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g38730-like [Brachypodium distachyon]
Length = 599
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P +V + T+IH E + +EA + +M A+ D Y ++ + + D+ A
Sbjct: 246 GVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEA 305
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++ +++ G P Y +IR G++ + + E + + D T L+
Sbjct: 306 VKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLIN 364
>gi|115488482|ref|NP_001066728.1| Os12g0456100 [Oryza sativa Japonica Group]
gi|77555567|gb|ABA98363.1| hypothetical protein LOC_Os12g27060 [Oryza sativa Japonica Group]
gi|113649235|dbj|BAF29747.1| Os12g0456100 [Oryza sativa Japonica Group]
gi|125579252|gb|EAZ20398.1| hypothetical protein OsJ_36005 [Oryza sativa Japonica Group]
Length = 1117
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 108/294 (36%), Gaps = 38/294 (12%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLA----SKGVLEATA 270
ALQ F W K+ + + + +++ + K L + A +
Sbjct: 739 ALQFFSWVGKRSYYMQTTKTYNTAIKLAGSAKDFKHMRHLYREMIWAECCPTVDTWNVMI 798
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---------------------G 309
+ G ++A + K GG D + Y+ LI+ L G
Sbjct: 799 CQYGNAGLTEMALETFYQMKQGGFQPDKTTYSHLIMYLSRRKGRKVDAAVKIFHEMCRAG 858
Query: 310 KNPDKYMLV--MTLLDELGQRDDLNLS-----------QQDCTAIMKVGIRLQKFGVVES 356
PD M+ +++L E G D S Q + +++ R + S
Sbjct: 859 YIPDNGMVCTYLSVLCECGMIDRAESSVVLLCKHGFSIQAGYSILIRSLCRSDRMAEALS 918
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF + G + MY +LIH+ L + +A + M+ Y + ++
Sbjct: 919 LFDNIKNYGCSRSAYMYGSLIHALLRRDRFEDASAKLAEMKNLGIAQSTHMYTSFMIYYL 978
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
D+S+A+ ++ E G PT Y +IR MA G +++ DV + ++ G
Sbjct: 979 GKRDVSKAMDVLKEMTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKG 1032
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K N+ LA K++ K+ G LD ++Y LI + D + LL EL Q L
Sbjct: 617 GFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGD-MVNASQLLSEL-QEVGL 674
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ ++ ++++ +LQ L + G + +YTTLI L E K A
Sbjct: 675 SPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASE 734
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ M A + DL Y V+I + A + + PT IY +I
Sbjct: 735 LYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHF 794
Query: 452 ASGRL 456
G L
Sbjct: 795 KEGNL 799
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 350 KFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G V S +T G P V YT LI+ AL V+ M+ D+
Sbjct: 585 KEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVT 644
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
Y +I F D+ A + S+L+E G P +Y MI F
Sbjct: 645 VYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGF 688
>gi|359482337|ref|XP_002267057.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
mitochondrial-like [Vitis vinifera]
Length = 405
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
+K +VM +++ G D+ T ++ + ++ V L++ G P +
Sbjct: 198 EKAYMVMIEMEKAGVNPDV----VTYTTLISAFYKSNRWEVGNGLWNLMVMKGCLPNLAT 253
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
+ I ++ ++ +A +++ ME D Y +VIK F + A + +S L
Sbjct: 254 FNVRIQYLVNRRRAWQANSLMGMMEYLGITPDEVTYNLVIKGFCQAGYLEMAKKVYSALH 313
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G+ P IY+ MI G +CK+ + L+ T+ +LL+
Sbjct: 314 GKGYKPNVKIYQTMIHYLCKGGEFDMAYTMCKDCMNRNWSLNVDTIYKLLE 364
>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
Length = 745
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 35/266 (13%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFV 274
AL+ F W +KQP D + + +L RHH ++E + +E +
Sbjct: 485 ALRFFYWVEKQPGYKHDSFVYTKMISLLGRHHHFS---QVEELLMKLQSSDIEVSIV--- 538
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
++ I+ L + NPD M + + +L + +
Sbjct: 539 --------------------TMNSIIFT---LSVSHNPDLAMKIFYWMKDLKVKPN---- 571
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ T ++ + ++++ F +++ +G P YT LI S E K A ++
Sbjct: 572 TRTYTTVIDMLVKMRHFDRAMAIYQEMLDAGCKPDAHTYTVLIQSLGREGKIDAAEHLLE 631
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M + C ++ Y +I + +S A+ F ++++ G P Y M + +
Sbjct: 632 KMPLNGCKPNVVNYTSLINSLIHYGRVSHALAVFKRMQDEGVMPNSITYSLMSKGLKRAN 691
Query: 455 RLAKCRDVCKEAEMAGFKLDKQTVVE 480
L +V E +MA KQ V+
Sbjct: 692 MLHDLVEV--EKKMATIDFWKQQRVK 715
>gi|255553141|ref|XP_002517613.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543245|gb|EEF44777.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 400
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 11/188 (5%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
DK LVM ++ LG R D+ T ++ + ++ + L++ G P +
Sbjct: 194 DKAYLVMIQMERLGIRPDV----VTYTTLISAFYKNDRWEISNGLWNLMVLKGCLPNLST 249
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
+ I ++ ++ +A V+ ME D Y +VIK F + A R +S L
Sbjct: 250 FNVRIQHLVNIRQSWQANEVMLLMERIGISPDEVTYNLVIKGFGQAGYLEMARRVYSALH 309
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL-------QIE 485
G+ P IY+ MI G +CK+ + L+ T+ LL Q++
Sbjct: 310 GKGYKPNVKIYQTMIHCLCKGGEFDLAYTMCKDCMKKSWFLNVDTIHTLLDGLKKNGQLD 369
Query: 486 KESRIGTI 493
K I T+
Sbjct: 370 KAKMIVTL 377
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G P V YT +I+ K EA+++ M+ N + D+ Y +I
Sbjct: 324 VFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLC 383
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ + RAI ++KE G P Y ++ SGRL +++ + G+ L+
Sbjct: 384 KNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVH 443
Query: 477 TVVELLQ 483
L+
Sbjct: 444 AYTVLIN 450
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 14/284 (4%)
Query: 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLAR---HHELKVPFK-LENFVSLAS 262
G M +P ++ K + PD+ + + R H E FK +++ +
Sbjct: 79 GKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPD 138
Query: 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNP--DKYMLV 318
K A + K K A ++L + G PSI Y LI ++ + M +
Sbjct: 139 KVTYNALLDVYGKSRRTKEAMEVLREMEVNG--CSPSIVTYNSLISAYARDGLLKEAMEL 196
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+ E G +NL T ++ +R K +F +G P + + LI
Sbjct: 197 KNQMVEGG----INLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIK 252
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ K E + V ++ S C+ D+ + ++ +F S F ++K AGF P
Sbjct: 253 MHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 312
Query: 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
D Y +I + G + D+ K AG D T +L
Sbjct: 313 ERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVL 356
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V SL + G V YT+LI + +S + REA+ V ME C L Y
Sbjct: 13 KVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYN 72
Query: 410 VVIKLFVALNDISRAIR-YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V++ ++ + I+ F +K AG P Y +I + V K+ +
Sbjct: 73 VILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKS 132
Query: 469 AGFKLDKQTVVELLQIEKESR 489
GF DK T LL + +SR
Sbjct: 133 MGFVPDKVTYNALLDVYGKSR 153
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
G + V YTTL+ + K A+ V M A+ C ++ + +IK+ +
Sbjct: 202 EGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFA 261
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
++ F ++K + P + ++ +F +G ++ V KE + AGF ++ T L
Sbjct: 262 EMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTL- 320
Query: 483 QIEKESRIGTI 493
I SR G+
Sbjct: 321 -ISAYSRCGSF 330
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 56/139 (40%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ + R Q F + ++ SG P++ Y +L++ + + V+ + A
Sbjct: 458 NAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILA 517
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
D +Y VI + + A R FS+++E+G P Y + + A
Sbjct: 518 KGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFED 577
Query: 459 CRDVCKEAEMAGFKLDKQT 477
DV + G K ++ T
Sbjct: 578 AIDVVRYMIKHGCKPNQNT 596
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 24/246 (9%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKL 281
L PD + ++ L + ++ L F S+ +KGV A G+ K G + +
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTL--FDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527
Query: 282 AWKLLMVAKDGGRMLD----PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
A+ LL RML+ P+ Y +L G +K M + L + + + +
Sbjct: 528 AYSLL------ERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSL--VAKMLTMGVKPTV 579
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
T + +G + K G + F H G P V YT +H+ S+ E V+
Sbjct: 580 VTYTILIG-EMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M L DL Y V+I + L RA + + + G P+ I +I+
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698
Query: 455 RLAKCR 460
R+ + R
Sbjct: 699 RMKETR 704
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 4/220 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K +L+ A++LL + + G + D Y+ I L K + TL D + + +
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKE-GRVEEAGTLFDSVKAKG-V 505
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
++ TA++ ++ K V SL + P Y LI EKK +EA +
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+V M + Y ++I + A++ F+ + G+ P Y + +
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
+ G L + DV + G D T L I+ +R+G
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTYTVL--IDGYARLG 663
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 14/178 (7%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN-------LSQQDC------- 338
G +++ +YA I++ G +PD + +L + N + Q+ C
Sbjct: 208 GNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSY 267
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + LF T PTV YT LI++ + EAL + M+
Sbjct: 268 TNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE 327
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C ++ Y V+I N + A + S++ E G P+ Y +I + G +
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%)
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
+G P YT+LI K A V M C + +Y +I
Sbjct: 220 IVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGR 279
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
I+ A++ F+ + E CPT Y +I SGR + ++ E + G + + T
Sbjct: 280 INEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339
Query: 481 LL 482
L+
Sbjct: 340 LI 341
>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 543
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 56/145 (38%)
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
LS +M R +KF G +P V YT+ I + E+ R+ V
Sbjct: 261 LSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQV 320
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+ M + C + Y V+ +S+A+ + K+K G +Y MI I
Sbjct: 321 LEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGK 380
Query: 453 SGRLAKCRDVCKEAEMAGFKLDKQT 477
+GRL DV ++ G D T
Sbjct: 381 AGRLKDACDVFEDMPKQGVVRDVVT 405
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 13/246 (5%)
Query: 243 ARHHE--LKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI 300
AR HE ++ +++ F L VKG +++ A K+++ K ++ S
Sbjct: 207 ARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKG---LIPLSS 263
Query: 301 YAKLILELG----KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
++ +L G + D M + ELG D+ T+ ++ + F V+
Sbjct: 264 HSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVF----SYTSFIEAYCHERDFRKVDQ 319
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ +G P V YTT++ + +AL V M+ C+ D P Y +I +
Sbjct: 320 VLEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILG 379
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ A F + + G Y MI A R + KE E K +
Sbjct: 380 KAGRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVG 439
Query: 477 TVVELL 482
T LL
Sbjct: 440 TYHPLL 445
>gi|356575210|ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Glycine max]
Length = 609
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 25/239 (10%)
Query: 240 EVLARHHELKVPFKLENFVSLASKGVLEATAKG-----FVKGGNLKLAWKLLMVAKDGGR 294
E LARH + L+ F +A KG+ E + F + +A +LL AK
Sbjct: 274 ESLARHG--RAFEALDFFTEMAKKGISEYSIYSKLIYSFASLREVVVAEELLREAKGKMT 331
Query: 295 MLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKF 351
+ DP +Y KL+ +E G L+ L+ + + +D ++ DC V +K
Sbjct: 332 IKDPEVYLKLVHMYIEEG-------LLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKR 384
Query: 352 GVVESL--FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN---CLFDLP 406
G + ++ F G + V Y ++I++ + +A V ME C++
Sbjct: 385 GFLAAVKVFEELISKGYESGQVTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVY--- 441
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
AY +I ++ + A++ +K+KE G P IY +I + L + + KE
Sbjct: 442 AYSTMIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKE 500
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P +V Y TL+ S + +A ++ M ++CL D + +I I +A
Sbjct: 151 GCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQA 210
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F ++ E G P Y +I +G++ + ++ E G+ DK + +
Sbjct: 211 FEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKMYQLLTESL 270
Query: 485 EKESRI 490
KE +I
Sbjct: 271 NKEDKI 276
>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 638
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 45/261 (17%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYM---LVMTLLDELGQ 327
+ F + A+++L + + G + KLI K + + LV T++ + +
Sbjct: 271 QAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVK-NR 329
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
D+ Q+ K + LQ F V +L G P +VMYTTLIH +
Sbjct: 330 NPDIFTYQEIINGFCKNWMTLQAFEVFNAL----KDRGYAPDMVMYTTLIHGFCKMGQLE 385
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF------CPT-- 439
+A + + M L + +Y +I F + ++ A++ + K+ ++G+ C T
Sbjct: 386 DASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLI 445
Query: 440 ------------YDIYRDM---------------IRIFMASGRLAKCRDVCKEAEMAGFK 472
YD +R+M I+ F G++ + D+ KE + G +
Sbjct: 446 LGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQ 505
Query: 473 LDKQTVVELLQIEKESRIGTI 493
+ L+Q K ++G++
Sbjct: 506 PSTSSYAHLIQ--KLCQLGSV 524
>gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Vitis vinifera]
Length = 1101
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 2/175 (1%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
A L+ + ++ G + D + Y ++ E + D LLD++ +R L S +I
Sbjct: 533 AKSLIDLMQENGIVPDLATYLIMVHEHCNHGD-LASAFGLLDQMNERG-LKPSVAIYDSI 590
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ R ++ E++F +G DP ++Y T+I ++ EA + M
Sbjct: 591 IGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQLFDKMIEHGF 650
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+Y VI V N I + Y S + + GF P +Y +I F+ G L
Sbjct: 651 QPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTVLYTSLINQFLRKGEL 705
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
+MYT+LIH KK R A+ V M C D Y +I FV L + ++
Sbjct: 270 MMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQ 329
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRL 456
+ E G P Y MIR + G++
Sbjct: 330 MSEWGLQPNVVTYHIMIRRYCEEGKV 355
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 57/146 (39%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
C + M + K F G P +V Y+ L+H +E + L + +ME
Sbjct: 335 CNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSME 394
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ + D + +VI + + + F++++E G P Y +I F GRLA
Sbjct: 395 GNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLA 454
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQ 483
D + G K + L+Q
Sbjct: 455 DAMDKFNQMIAMGLKPEGIVYHSLIQ 480
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM--EASNCLFDLPAYRV 410
VV L H G +P + Y T++ + + + + AL ++ M ++ C ++ Y
Sbjct: 173 VVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNT 232
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
VI ++S+A F ++ + G P Y +I + + K V ++ G
Sbjct: 233 VIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNG 292
Query: 471 FKLDKQT 477
F+ +K T
Sbjct: 293 FQPNKVT 299
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNP--DKYMLVMTLLDELGQR 328
VK G ++ A+++ + L P++ Y +I L K+ D+ + ++ L++E G
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCL-PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCC 168
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
++ + K G + F +L T G P V+MY TL++ ++ E
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGF----TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
AL +V M S C + Y +++LF + RA R + E G P Y +I
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284
Query: 449 IFMASGRL 456
RL
Sbjct: 285 GLCRDARL 292
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME- 397
++K + +FG F + P ++ + L+ + + + EA + +M
Sbjct: 69 NGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHT 128
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+S CL ++ Y VI + RAI + E G CP Y ++ +GR
Sbjct: 129 SSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTD 188
Query: 458 KCRDVCKEAEMAGFKLD 474
K + +E GF+ D
Sbjct: 189 KGFTLLQEMTRRGFQPD 205
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNP--DKYMLVMTLLDELGQR 328
VK G ++ A+++ + L P++ Y +I L K+ D+ + ++ L++E G
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCL-PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCC 168
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
++ + K G + F +L T G P V+MY TL++ ++ E
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGF----TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
AL +V M S C + Y +++LF + RA R + E G P Y +I
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284
Query: 449 IFMASGRL 456
RL
Sbjct: 285 GLCRDARL 292
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME-ASNCLFDLPAY 408
+FG F + P ++ + L+ + + + EA + +M +S CL ++ Y
Sbjct: 80 RFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
VI + RAI + E G CP Y ++ +GR K + +E
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR 199
Query: 469 AGFKLD 474
GF+ D
Sbjct: 200 RGFQPD 205
>gi|224133698|ref|XP_002321639.1| predicted protein [Populus trichocarpa]
gi|222868635|gb|EEF05766.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
KF E + +G +P + Y+ L+ K+ EA V+ MEA C+ D+ +
Sbjct: 234 KFDEAEKIVKAMRDAGYEPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWT 293
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++I+ A N + + + K+ E P D+ +++ F++ ++
Sbjct: 294 ILIQGHFAANQVDKGLLCLVKMTEKNTDPDADLLDVLVKGFLSQRKM 340
>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 526
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V +Y LI+ + +AL M + +C D Y VVI L + + A
Sbjct: 377 GFAPNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLA 436
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+ F ++KE G P Y M+ + +GR +C+E +A ++ +++LQ
Sbjct: 437 HQLFEQMKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREM-VANHIEPREGALKILQF 495
Query: 485 EKESRIG 491
+++ G
Sbjct: 496 HEKASGG 502
>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V YT LI + + K REA +V +E D Y ++K + L+ S AI
Sbjct: 235 PNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEV 294
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++++KE G P Y +I SGR+++ + + + G D+ T L+
Sbjct: 295 YNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMN 350
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PTVV YT+LI +E + +A V M A + + +I N ++ A
Sbjct: 292 GLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEA 351
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
IR F ++KE P+ Y MI SG +++ + E GF D T
Sbjct: 352 IRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYT 404
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+A+++ L+ F + + HW + ++V+Y LIH ++ EAL E
Sbjct: 135 SAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEAL------EI 188
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
NCL V+ + N+ A F ++ E G C + Y +I F
Sbjct: 189 KNCLMQKGLEANVVTYYGKFNE---AELLFKEMGEKGLCANHITYSILIDSF-------- 237
Query: 459 CRDVCKEAEM---AGFKLDKQT 477
C+ EM GF LDK T
Sbjct: 238 ----CRRGEMDNAIGF-LDKMT 254
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 50/134 (37%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
KF E LF G + Y+ LI S + A+ + M ++ F + Y
Sbjct: 207 KFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYN 266
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
+I + L + S A YF ++ + G PT Y +I + G K V E
Sbjct: 267 SLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAK 326
Query: 470 GFKLDKQTVVELLQ 483
G + T ++
Sbjct: 327 GISPNTYTFTAIIS 340
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 58/144 (40%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A++K R + +F+ +G +P V++TTLI + E + + +M
Sbjct: 260 ALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVR 319
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
+ DL AY ++ ++ A ++K AG P Y +I G+L
Sbjct: 320 GVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMA 379
Query: 460 RDVCKEAEMAGFKLDKQTVVELLQ 483
D+ ++ LD+ T L+
Sbjct: 380 MDIKQKMAEKEVSLDEVTYTALIS 403
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V YT LI + + K REA +V +E D Y ++K + L+ S AI
Sbjct: 232 PNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEV 291
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++++KE G P Y +I SGR+++ + + + G D+ T L+
Sbjct: 292 YNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMN 347
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 46/119 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L+ H+G P Y+ +IH K A + M L Y ++I L
Sbjct: 159 LYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHA 218
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
A++ +S L+E G+ P Y ++ + G + V +E E AG+ D
Sbjct: 219 KAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADN 277
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T I+ + R + F V+ +L G +P VV Y LIH +L + M+
Sbjct: 71 TTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQM 130
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C D Y +I L A+ + +++ AGF P Y +I +G+L
Sbjct: 131 VGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGKL 188
>gi|255548041|ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545557|gb|EEF47061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 262
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P +V Y T+I E + +A V+ +ME + CL +L +YR ++ A
Sbjct: 94 GCNPDIVHYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGICDQGMFDEA 153
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y ++ GF P + + +++ F G++
Sbjct: 154 KSYLEEMILKGFSPHFSVSHALVKGFCIVGKI 185
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R Q G V L + G P + YTTL++S +KK REA ++ M+ C D+
Sbjct: 42 RSQVNGAV-GLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIV 100
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I F A + ++ G P YR ++ G + + +E
Sbjct: 101 HYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGICDQGMFDEAKSYLEEM 160
Query: 467 EMAGF 471
+ GF
Sbjct: 161 ILKGF 165
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 347 RLQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
RL K +V H F +G PTVV YT+LIH + + +EA ++ M+ N +
Sbjct: 240 RLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMP 299
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
DL A+ V+I + ++S A + E G P Y ++ + + + R V
Sbjct: 300 DLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV 358
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G LF G P V Y+ +I K E + ++ +M+ C D+ Y
Sbjct: 176 KIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYN 235
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
++ ++ A+ F K+K G PT Y +I GR
Sbjct: 236 TIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGR 281
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ LF TH G P V Y TLI ++ EA + +M ++ +L Y +++
Sbjct: 391 KQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDC 450
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ +A+ F ++ +G P Y MI G+ R++ E + G +
Sbjct: 451 LSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQ 508
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 18/186 (9%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
GR+++ I +G PD + TL+D ++ + + ++ VG++ F
Sbjct: 497 GRVMEGQRLVDSIECMGVRPD-VISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFS 555
Query: 353 VVESLFHWFTHSGR----------------DPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
+L H + +GR P VV Y T++H K+ EA + NM
Sbjct: 556 Y-NTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 614
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
S +D+ Y +++ N + AI+ F L G + MI + GR
Sbjct: 615 INSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRK 674
Query: 457 AKCRDV 462
D+
Sbjct: 675 EDAMDL 680
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 3/130 (2%)
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
L++ + +A++K R+ SLF G P VV Y T++H + EA +
Sbjct: 792 LNEANSSALIKKARRIDD---AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKEL 848
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+M S ++ Y +++ N + A + F L G + MI +
Sbjct: 849 YLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLK 908
Query: 453 SGRLAKCRDV 462
GR D+
Sbjct: 909 GGRKEDAMDL 918
>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 458
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P +V YT LI + + K REA+ ++ + D Y ++K + L+ S AI+
Sbjct: 222 EPNLVTYTILIDNVCNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLSKGSDAIQ 281
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
F K+KE G P Y +I GR+++ + K +G D T L+
Sbjct: 282 VFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMN 338
>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 6/260 (2%)
Query: 195 RKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL 254
R+ S+ F V L N +R+L W ++ P + + R + + L
Sbjct: 118 RQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGL 177
Query: 255 ENFV---SLASKGVLEAT-AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
+ + +LA +T F K G A L + D +Y+ LI EL +
Sbjct: 178 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLI-ELSR 236
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
Y +++ L +R + +++ V + + F L +G P
Sbjct: 237 RLCDYSKAISIFSRL-KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNT 295
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V Y+TL+ + K EAL+V M+ NC DL ++I ++ L+ + A R F
Sbjct: 296 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWS 355
Query: 431 LKEAGFCPTYDIYRDMIRIF 450
L++ P Y ++R++
Sbjct: 356 LRKMDIEPNVVSYNTILRVY 375
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 88/232 (37%), Gaps = 16/232 (6%)
Query: 228 LFPDDRLLASTVEVLARH--HELKVPFKLENFVSLASKG-----VLEATA-KGFVKGGNL 279
++P+ R A T LA H V +E F +A G V+ T G + G L
Sbjct: 304 VWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRL 363
Query: 280 KLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL---GQRDDLNLSQQ 336
A K G LD Y LI + K LL+E+ G + D+
Sbjct: 364 LDACTTAASMKKAGFKLDAKAYNILIGGFCRK-KKLHEAYELLEEMKGVGLQPDVYTYNT 422
Query: 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
+ + K G F V+ L G P+VV + TL+H K EAL + +M
Sbjct: 423 LLSGLCKAG----DFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSM 478
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ + + Y +I ++ AI+ F +++E Y +++
Sbjct: 479 DEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLK 530
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LFH G P VMY T+I + +A T +M+ + D AY ++I F
Sbjct: 334 LFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFC 393
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+ A ++K G P Y ++ SG L K D E+ G +D
Sbjct: 394 RKKKLHEAYELLEEMKGVGLQPDVYTYNTLL-----SG-LCKAGDFSAVDELLGHMID 445
>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 595
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK-NPDKYMLVMTLLDEL 325
A G K G + AW L ++ G+ + P ++ L G N D++ LL +
Sbjct: 222 NAVVDGLCKDGMVFEAWDLF--SQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANM 279
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVV---ESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
++ + D +G R K G++ +S+F + H G + VV Y+++I
Sbjct: 280 MRKGIM----PDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCM 335
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ ++A+ V M CL ++ Y +I + + ++++A+ + ++ G P
Sbjct: 336 LNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVT 395
Query: 443 YRDMIRIFMASGR 455
+ +I F +G+
Sbjct: 396 WNTLIGGFCKAGK 408
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
+FG SL + P VV Y T+I K+ +AL + M+ S C + L +
Sbjct: 157 EFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWG 216
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++I F + A+ ++K G +Y +IR F G L
Sbjct: 217 ILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGEL 263
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 348 LQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G ++ + F RD P V+ + +I L + A +++ M + D
Sbjct: 539 LCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPD 598
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
L Y +I F+ L + AI +F K+ ++GF P I +++ ++ G K + K
Sbjct: 599 LFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVK 658
Query: 465 EAEMAGFKLDKQ 476
+ LDK+
Sbjct: 659 KLVDKDVVLDKE 670
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G+ PTVV YT LIH+ + A+ M+ + ++ Y V+I F
Sbjct: 574 IFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFC 633
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ + +A ++F +++E G P Y +I
Sbjct: 634 KVRKMDQACKFFIEMQEKGIFPNKYTYTILI 664
>gi|15228936|ref|NP_188942.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273922|sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020
gi|9294191|dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana]
gi|332643185|gb|AEE76706.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 842
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G PT V + T+IH + + E +++ M+ +C D Y ++I L
Sbjct: 321 FKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKL-HCAPDTRTYNILISLHTK 379
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
NDI RA YF ++K+ G P YR ++ F + + + E + ++D+ T
Sbjct: 380 NNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYT 439
Query: 478 VVELLQIEKESRI 490
L ++ E+ +
Sbjct: 440 QSALTRMYVEAEM 452
>gi|297813013|ref|XP_002874390.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320227|gb|EFH50649.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1027
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 11/224 (4%)
Query: 235 LASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGR 294
L E+ R H VP ++ + ++ S + +G L A ++ A+ G
Sbjct: 779 LQCASEIYERMHTSGVPCSIQTYNTMISV---------YGRGLQLDKAIEIFSNARRSGL 829
Query: 295 MLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
LD IY +I+ GK K ++L E+ Q+ + ++K+ + V
Sbjct: 830 YLDEKIYTNMIMHYGK-AGKMSEALSLFSEM-QKKGIKPGTPSYNMVVKICATSRLHREV 887
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ L +G Y +LI + + EA + M+ + +++
Sbjct: 888 DELLQAMERTGICTESSTYLSLIQAYAESSQFAEAEKTITLMQEKGIPLFHSHFSLLLSA 947
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
F + A R +SK+ EAG P R +++ +M+ G K
Sbjct: 948 FAKAGMMDEAERIYSKMSEAGISPDSACKRTILKGYMSCGDAEK 991
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Query: 352 GVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
G +E F F S G DP + + L+++ + K REA + N D Y
Sbjct: 707 GWLEDAFGLFMESAEKGCDPGAITISILVNALTNRGKHREAEHISRTCLEKNMALDTVGY 766
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+IK + + A + ++ +G + Y MI ++ +L K ++ A
Sbjct: 767 NTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARR 826
Query: 469 AGFKLDKQTVVELL 482
+G LD++ ++
Sbjct: 827 SGLYLDEKIYTNMI 840
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 44/247 (17%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLA-----SKGVLEATAKGFVKGGNLKLAWKL 285
++ +A+ + V R H+LK +L +VS K V+ + +V+ G L+ A+ L
Sbjct: 658 EEETVATLIAVYGRQHKLKEAKRL--YVSAGESKTLGKSVISSMIDAYVRCGWLEDAFGL 715
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345
M + + G DP + + L++ L R ++ ++
Sbjct: 716 FMESAEKG--CDPGA---------------ITISILVNALTNRGKHREAEHISRTCLEKN 758
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
+ L G Y TLI + L K + A + M S +
Sbjct: 759 MALDTVG--------------------YNTLIKAMLEAGKLQCASEIYERMHTSGVPCSI 798
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y +I ++ + +AI FS + +G IY +MI + +G++++ + E
Sbjct: 799 QTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKAGKMSEALSLFSE 858
Query: 466 AEMAGFK 472
+ G K
Sbjct: 859 MQKKGIK 865
>gi|297849786|ref|XP_002892774.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338616|gb|EFH69033.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 883
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 348 LQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G VE LF T G P V+ YTTLI + KC +A ++ M+ S D
Sbjct: 406 LGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGSGKTPD 465
Query: 405 LPAYRVVIKLFVALNDISR-AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ Y V+ +A N +S+ A+ +++ G PTY + +I + +G+L K
Sbjct: 466 IVIYNVLAG-GLARNGLSQEALETLKLMEDRGVKPTYVTHNMVIEGLIVAGKLDK 519
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNM--EASNCLFDLPAYRVVIKLFVALNDIS 422
G P V YTTL+ +EKKC EA ++ M + NC ++ +Y VI F D+
Sbjct: 210 GCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVG 269
Query: 423 RAIRYFSKLKEAGFCP 438
+A F K+ + G P
Sbjct: 270 KAYTLFCKMLDHGIPP 285
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G + G + A +L M D G L Y ++ L +N D+ + + ++L ++
Sbjct: 594 GLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDE---ALRMFEDLRSKE 650
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
L + + ++ +++ + +SLF G P V+ Y+ +I S + E E+
Sbjct: 651 -FELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEES 709
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
+ +ME + C D ++++ + D+ RA Y +K+ E F
Sbjct: 710 DNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNF 756
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 354 VESLFHWFTHSGRD--PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411
+E L H G + P VV Y T+I E + +A + M D+ Y +
Sbjct: 182 LELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSL 241
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
I + +A+ + + G P Y MIR + + G+L + + K +M+G
Sbjct: 242 IDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLK--KMSGS 299
Query: 472 KLDKQTVVELLQIEKESRIG 491
L V L I+ +IG
Sbjct: 300 GLQPDVVTYSLLIQYYCKIG 319
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 4/217 (1%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML-VMTLLDELG 326
A G+ G + A ++ V +D G + P+I++ IL G K + M L E+
Sbjct: 313 AIMDGYCLRGQVDRARRVFNVLRDKG--IKPNIFSYSILINGYCKKKNLAKAMQLFGEIS 370
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
Q+ L + I+ I + + G + +F G P + +++TL+
Sbjct: 371 QKG-LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLV 429
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EA+ + +E + ++ Y VVI + + A F KL G P Y M
Sbjct: 430 EEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVM 489
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
I F G + + + ++ E G + T ++Q
Sbjct: 490 ITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQ 526
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 16/224 (7%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
G+ K NL A +L G D Y+ ++ +E+G+ D + +L +G
Sbjct: 352 GYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEML-RVGPT 410
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
D+ L K +G+VE LF + D + YT +I+ +
Sbjct: 411 PDICLHSTLLFGYFK-------YGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDR 463
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI-YR 444
REA + + + + D+ Y V+I F K+++ G CP +I Y
Sbjct: 464 VREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNG-CPANNITYN 522
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
+++ F S ++++ KE GF D T L+ + KE+
Sbjct: 523 VIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKEN 566
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G+ + LL + + G D Y+ +I L K+ + + LL+E+ Q+
Sbjct: 177 GLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDIN-LDAAINLLNEMKQK--- 232
Query: 332 NLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
N+ T +++ +L ++ V++L + +P V ++ LI E K +A
Sbjct: 233 NIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDA 292
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
V+ +M D+ Y ++ + + RA R F+ L++ G P Y +I
Sbjct: 293 DEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILING 352
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ-IEKESRIG 491
+ LAK + E G K D T +L + + RIG
Sbjct: 353 YCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIG 395
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH G+ P +V Y+ L+ S + EA+ ++ +EASN D+ Y ++I
Sbjct: 401 ALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 460
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
++ A FS L G P+ Y MI G L + + E +
Sbjct: 461 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 512
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
Query: 287 MVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI 346
MVA+ G+M D Y+ L+ L KN M LL + + +LN Q I+
Sbjct: 406 MVAR--GQMPDLVTYSILLDSLCKNR-HLEEAMALLKAI-EASNLNPDIQVYNIIIDGMC 461
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R + LF + G P+V Y +IH EA + M+ ++C D
Sbjct: 462 RAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGC 521
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
Y + + F+ N+ RAI+ ++ GF
Sbjct: 522 TYNTIARGFLQNNETLRAIQLLEEMLARGF 551
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G LF G P VV Y TLI+ A+ ++ +ME NC D+ Y
Sbjct: 150 KIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYT 209
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+I ++ A FS++ G P Y ++
Sbjct: 210 SIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLV 247
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKC 386
++NL DCT + L + G V+ + H + P ++ Y T++ +
Sbjct: 559 EMNLDPTDCTYNTLLA-GLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEV 617
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
AL +++NM C+ DL +Y + V + ++ A R F ++K+ P Y +
Sbjct: 618 NYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-LAPDYTTLCTI 676
Query: 447 IRIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQ 483
+ F+ +G + + KE + G K D+ + L++
Sbjct: 677 LPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLME 714
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 89/240 (37%), Gaps = 15/240 (6%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAWK 284
+D ++A T V A +V + F + KG+ + GF+K L A +
Sbjct: 353 NDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALE 412
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLV--MTLLDELGQRDDLNLSQQDCTAIM 342
L G + Y I GK+ + + L+ G D+ ++
Sbjct: 413 LFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLA 472
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K G + G+ + +FH G P + YT +I EA+ V M + C+
Sbjct: 473 KSG----RLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCV 528
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D+ A +I + A + F +LKE PT Y ++ GR K ++V
Sbjct: 529 PDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLA---GLGREGKVKEV 585
>gi|296084128|emb|CBI24516.3| unnamed protein product [Vitis vinifera]
Length = 970
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 2/175 (1%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
A L+ + ++ G + D + Y ++ E + D LLD++ +R L S +I
Sbjct: 413 AKSLIDLMQENGIVPDLATYLIMVHEHCNHGD-LASAFGLLDQMNERG-LKPSVAIYDSI 470
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ R ++ E++F +G DP ++Y T+I ++ EA + M
Sbjct: 471 IGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQLFDKMIEHGF 530
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+Y VI V N I + Y S + + GF P +Y +I F+ G L
Sbjct: 531 QPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTVLYTSLINQFLRKGEL 585
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
+MYT+LIH KK R A+ V M C D Y +I FV L + ++
Sbjct: 150 MMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQ 209
Query: 431 LKEAGFCPTYDIYRDMIRIFMASGRL 456
+ E G P Y MIR + G++
Sbjct: 210 MSEWGLQPNVVTYHIMIRRYCEEGKV 235
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 19/161 (11%)
Query: 317 LVMTLLDELGQRDDLNLSQQDC-----------TAIMKVGIRLQKF----GVVESLFHWF 361
L TL D L +R L+L QQ AI+ V RL G V+ F+ F
Sbjct: 42 LCFTLTDRLIRRGVLSLGQQVVRRMIKQSPSVSDAILAVDKRLIDGLCDKGHVDEAFYMF 101
Query: 362 ----THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
+G T+ +Y TL + +++ EA V ME+ D Y +I +
Sbjct: 102 DTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCR 161
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ A+R F ++ + G P Y +I F+ G K
Sbjct: 162 GKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDK 202
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 31/214 (14%)
Query: 271 KGFVKGGNLKLAWKLLMV-----AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL 325
KGF + G ++ AW + AKD D Y +I LG V LD+
Sbjct: 240 KGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLG--------VAGQLDKA 291
Query: 326 GQRDDLNLSQQDCT-------AIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTT 375
+ D +S++ CT A+++V + K G VE F R P VV YT
Sbjct: 292 RKLFD-EMSKEGCTPSVATYNALIQV---ICKKGNVEDAVTVFDDMVRKDYMPNVVTYTV 347
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
LI K A+ ++ M+ C + Y V+I+ +I +A+ F ++ +
Sbjct: 348 LIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSKGE 407
Query: 436 FC-PTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
C P D Y +I R D+ A M
Sbjct: 408 DCLPNQDTYNIIISAMFVRKR---AEDMATAARM 438
>gi|326498263|dbj|BAJ98559.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P + Y+ LI KC EA V+ MEA C DL + ++I+ A ++ +
Sbjct: 363 AGHQPDNITYSQLIFGLCKAAKCDEARQVLDEMEAEGCTPDLKTWTMLIQGHCAAGEVDK 422
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIR 448
A++Y +++ E D+ M++
Sbjct: 423 ALQYLTEMIEKDLEADADLLDVMVK 447
>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
Length = 665
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +MK I K V S+ T G PT+V YTT++ + +K+ + ++ +E
Sbjct: 72 TKLMKTLIERGKPQEVHSITKGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQ 131
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ D + +I F ++ A++ F K++E G PT + +I+ F G+
Sbjct: 132 NGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGK 188
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL--GKNPDKYMLVMTLLDELGQRDDLNLS 334
G + A++++ G + D S Y K+I L K DK L+ + ++G D+
Sbjct: 431 GKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTY 490
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
+ K G+ Q +S F +G P VV YT L+H+ L K+ +A +
Sbjct: 491 TILIDSFCKAGLIEQ----AQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFH 546
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
M C + Y +I +I +A ++KL
Sbjct: 547 RMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKL 583
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 118/316 (37%), Gaps = 58/316 (18%)
Query: 184 AEVLDKCGRFLRKG----SLSFTVRELGHMNLPERALQTFCWAQKQP------------- 226
A+ K RFLR+ + S V LG + PE ++ F WA++Q
Sbjct: 82 ADFDGKAERFLRRYREFLTDSVVVAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALA 141
Query: 227 -----------------HLFPDDR-LLASTVEVLARHHELKVPF--------KLENFVSL 260
+ DDR +L + VL R L+ + +L++F
Sbjct: 142 EVLGFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYR 201
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI---YAKLILELGKNPDKYML 317
S A + G +++A+++ G +D S +A+ + + G+ D
Sbjct: 202 PSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDA--- 258
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
LD L +R+D L CT ++ + F S H + P VV Y TL+
Sbjct: 259 ----LDLL-EREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLL 313
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
L +K+ ++ M C + ++ + D + A + F+++ G
Sbjct: 314 TGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCP 373
Query: 438 PTYDIYRDMIRIFMAS 453
P Y +Y IF+ S
Sbjct: 374 PGYVVY----NIFIGS 385
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P VV YT ++ + +AL ++ ME C ++ Y +I + +
Sbjct: 710 NPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLE 769
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASG 454
F ++K G P Y YR +I A+G
Sbjct: 770 LFMQMKTKGCAPNYVTYRILINHCCAAG 797
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 110/316 (34%), Gaps = 58/316 (18%)
Query: 179 SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQT----------------FCWA 222
SH+ VA V CG + G TVR L +N A Q F WA
Sbjct: 1 SHRLVARV---CGILNQHGWGDETVRALAGLNASLNAYQVNEILKQQKEAGVAYNFFIWA 57
Query: 223 QKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLA 282
+KQ D + + +L R V L N + + E +
Sbjct: 58 RKQAGFKHDVHTYTTILGILGRAKSFDV---LNNLLDEMIREGCEPNV----------VT 104
Query: 283 WKLLMVAKDGGRMLDPSIYAKLILEL-GKNPDK--YMLVMTLLDELGQRDDLNLSQQDCT 339
+ L+ LD S+ ++++ G PD+ Y ++ L + G D
Sbjct: 105 YNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHD---------- 154
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A M++ ++Q H+G P Y+ +IH K A + M
Sbjct: 155 AAMELYRQMQ-------------HAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDR 201
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
L Y ++I L A++ +S L+E G+ P Y ++ + G +
Sbjct: 202 GYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDA 261
Query: 460 RDVCKEAEMAGFKLDK 475
V +E E AG+ D
Sbjct: 262 EQVFEEMERAGWVADN 277
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV Y LI + +++ +A+ VV M + + Y ++ +
Sbjct: 88 VFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNERTYTTIMDGYA 147
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+L D +A YFS++K+ G Y +++ SGR+ V K EM + +
Sbjct: 148 SLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTK--EMNAKNIPRN 205
Query: 477 TVVELLQIEKESR 489
T V + I+ +R
Sbjct: 206 TFVYNILIDGWAR 218
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 57/137 (41%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
I L+ + ++F G P VV+Y +I + AL +V M+
Sbjct: 7 IYLKDWANAFAIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTS 66
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I F I +A+ F ++ +G PT Y +I + ++ K +V E
Sbjct: 67 RTFMPIIHAFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDE 126
Query: 466 AEMAGFKLDKQTVVELL 482
+AG + +++T ++
Sbjct: 127 MLLAGIRPNERTYTTIM 143
>gi|297819444|ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323443|gb|EFH53864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%)
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+LS+ I + + +F E + ++G +P + Y+ L+ K+ EA
Sbjct: 364 SLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARG 423
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
V+ MEA C D+ + ++I+ N++ RA+ F+ + E GF ++ +I F+
Sbjct: 424 VLDQMEAQGCFPDIKTWTILIQGHCKNNELDRALACFANMLEKGFDIDSNLLDVLIDGFL 483
Query: 452 ASGRL 456
R+
Sbjct: 484 IQNRI 488
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ G +P V+ YTT+I+ A+ V ME + C ++ Y +I
Sbjct: 185 LFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC 244
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ A+ + S++ E G P Y ++ F G+L + + K EM G +
Sbjct: 245 KDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFK--EMVGRDVMPN 302
Query: 477 TVVELLQIEKESRIGTI 493
TV + ++ + G +
Sbjct: 303 TVTFTILVDGLCKEGMV 319
>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Glycine max]
Length = 1078
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PTV +TTL+H E +AL + ME + D+ AY V+I A DI A +
Sbjct: 944 PTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKL 1003
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMAS 453
+ ++K+ P IY +I F A
Sbjct: 1004 YEEMKQRDLWPNTSIYIVLIDSFCAG 1029
>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
Length = 1014
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG PTV +TTL+H E K +AL + ME+ D+ +Y V+I
Sbjct: 856 VFSTMMRSGMVPTVATFTTLMHCLCKESKIADALHLKRLMESCRLKVDVVSYNVLITGLC 915
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
IS A+ + ++K G P Y + ++G + ++ ++ E G
Sbjct: 916 KDKRISDALDLYEEMKSKGLWPNVTTYITLTGAMYSTGIMQNGEELLEDIEERGL 970
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 43/281 (15%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD + ++ L R H+++ + ++S+GV +GFV+ G+++ A
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVIM--LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236
Query: 284 KL---------------LMVAKDG----GRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
++ + V +G GR+ D Y + + G PD+ + T ++
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ-ITYNTFVNG 295
Query: 325 LGQRDDLNLSQQDCTAIMKVGIR------------LQKFGVVE---SLFHWFTHSGRDPT 369
L Q D + + + +++ G L K G +E + + G P
Sbjct: 296 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+ + TLI + + + EAL + + D+ + ++I + D A+R F
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
++K +G P Y +I + G+L K D+ K+ E G
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 340 AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+IM G +++KF +LF P VV Y++LI + AL +V M
Sbjct: 369 SIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHD 428
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ Y ++ ++ + +AI +KLK+ G P Y +I+ SG+L
Sbjct: 429 RGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLED 488
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQ 483
R V + + G L+ T ++Q
Sbjct: 489 ARKVFEGLLVKGHNLNVDTYTIMIQ 513
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VVMY T+I S K EA + M + D+ Y +I F L ++ AI
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDL 282
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F+K+ P + ++ F G++ + + V G K
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIK 327
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 43/281 (15%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD + ++ L R H+++ + ++S+GV +GFV+ G+++ A
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLM--LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236
Query: 284 KL---------------LMVAKDG----GRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
++ + V +G GR+ D Y + + G PD+ + T ++
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ-ITYNTFVNG 295
Query: 325 LGQRDDLNLSQQDCTAIMKVGIR------------LQKFGVVE---SLFHWFTHSGRDPT 369
L Q D + + + +++ G L K G +E + + G P
Sbjct: 296 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+ + TLI + + + EAL + + D+ + ++I + D A+R F
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
++K +G P Y +I + G+L K D+ K+ E G
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
F G P V Y L+ + +EAL+++ +M + C ++ Y ++ F
Sbjct: 177 FFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 236
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
++ A R ++E G P + M+ +G++ R V E G D
Sbjct: 237 RAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPD 294
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F T G P VV +T+LIH A+T+V M + + +I F
Sbjct: 316 SVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGF 375
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ A+ +K+ P+ Y +I + GR+ + R++ E E G K D
Sbjct: 376 CKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 435
Query: 476 QT 477
T
Sbjct: 436 VT 437
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+VV Y LI+ + EA ++ MEA D+ Y +I + D A
Sbjct: 398 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 457
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
++ E G P Y +IR+ RL+ + K G + D+ T L+
Sbjct: 458 NQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI 512
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQ-KFGVVESLFHWFTHSGRD----PTVVMYTTLIHS 379
L + LNL C I + ++ K G ++S F + P ++ Y+TLI+
Sbjct: 188 LNSKKSLNLEPNTC--IFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLING 245
Query: 380 RLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ +EA+ + M + + + D Y +I F + RA++ +K+ G P
Sbjct: 246 LCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNP 305
Query: 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
Y ++ F GRL + ++V E + G K D L+
Sbjct: 306 NVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINF 351
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 108/273 (39%), Gaps = 51/273 (18%)
Query: 191 GRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKV 250
G F R G ELG RAL F K L PD + + R+ ++
Sbjct: 372 GVFSRNG-------ELG------RALAYF-EKMKGVGLVPDTVIYTILINGYCRNDDVSG 417
Query: 251 PFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILEL 308
K+ N E +G V + + L+ G+MLD + ++ +++ E
Sbjct: 418 ALKMRN----------EMVERGCVMD---VVTYNTLLNGLCRGKMLDDADELFKEMV-ER 463
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368
G PD Y L TL+ G D N+++ SLF T P
Sbjct: 464 GVFPDFYTLT-TLIH--GYCKDGNMTK------------------ALSLFETMTLRSLKP 502
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
VV Y TL+ + +A + ++M + ++ ++I F +L +S A R +
Sbjct: 503 DVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLW 562
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++KE G PT +I+ ++ +G L+K D
Sbjct: 563 DEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAND 595
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 53/139 (38%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
C I+K +R + G P + Y TLI+S + E+ A ++ NME
Sbjct: 577 CNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNME 636
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
L +L Y ++ F + A K+ + G P Y +I +++ +
Sbjct: 637 ERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMK 696
Query: 458 KCRDVCKEAEMAGFKLDKQ 476
+ V E GF D +
Sbjct: 697 EAFRVHDEMLQRGFVPDDK 715
>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1280
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL-FDLPAYRVVIKLF 415
LFH G P V Y +LI + A +V M +NC+ D+ Y +I +F
Sbjct: 355 LFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMH-NNCIPADIVTYNSLIDVF 413
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ +AI K+KE G P Y +I G+L +DV ++ + G+ ++
Sbjct: 414 CKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNA 473
Query: 476 QT 477
T
Sbjct: 474 WT 475
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%)
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
+Y LI K EAL V M C+ L Y +I F N++ +A++ F +
Sbjct: 292 IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAM 351
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRL 456
+E GF P IY I G++
Sbjct: 352 EEKGFSPNTMIYSTFIDGLCKVGKI 376
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P +V Y +I+ E K EA + ME S C D ++ +I+ F+ N + +A
Sbjct: 389 GLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKA 448
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ + +++E F P + ++ ++ A +
Sbjct: 449 MEFLKRMREKNFSPNDSVTLMLVNLYAADAQ 479
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF T SG +++Y LI++ ++ R A+ + M + C + Y +VI
Sbjct: 31 LFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLC 90
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ ++ F ++ G CP +Y +I G+L + ++ E G K +
Sbjct: 91 KDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVI 150
Query: 477 TVVELLQ 483
T L+
Sbjct: 151 TYNSLIH 157
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G V+ Y TLI+ + K EA+T+ M+ + Y +++K
Sbjct: 241 LFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALY 300
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
I A F+ ++ G P+ D Y ++ +G + + DV + + +K
Sbjct: 301 QNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYK 356
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDEL 325
+G+ + G + A K+ K G ++P++Y I+ G+ + + +LD
Sbjct: 263 RGWCRAGEISEAEKVFKEMKLAG--IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSG 320
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
+ + + +M+V ++ + V +++ G +P + Y LI + ++
Sbjct: 321 CAPNAITFNN-----LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
A+ V+ M C + + + + D++ A R +SK+ EA P Y
Sbjct: 376 LENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNI 435
Query: 446 MIRIFMAS 453
++R+F+ S
Sbjct: 436 LMRMFVGS 443
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V++YT L+ + EA V M+ + ++ Y +VI ISRA
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHD 311
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
F+ + ++G P + +++R+ + +GR K V + + G + D T L++
Sbjct: 312 VFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIE 368
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++++F + L + ++ +T LI + EA+ ME C+ D
Sbjct: 163 KVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKI 222
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
A+ +VI S A +F LK+ F P +Y +++R + +G +++ V KE
Sbjct: 223 AFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281
Query: 467 EMAGFK 472
++AG +
Sbjct: 282 KLAGIE 287
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 96/261 (36%), Gaps = 15/261 (5%)
Query: 221 WAQKQPH-LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGF 273
+ Q +P+ + PD L+ + H + F F ++ +G L KG
Sbjct: 84 FKQFEPNGITPDLCTLSILINCFC--HLTHITFAFSVFANILKRGYHPNAITLNTLIKGL 141
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL--LDELGQRDDL 331
G +K A G LD Y LI L K + + L L+ + DL
Sbjct: 142 CFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDL 201
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ T I+ + + G L+ G P V YTTLIH +EA +
Sbjct: 202 VMY----TTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFS 257
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ M+ N D+ + ++I I A+ F ++K P Y +I
Sbjct: 258 LLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLC 317
Query: 452 ASGRLAKCRDVCKEAEMAGFK 472
+ L + +CK+ + G +
Sbjct: 318 KNHHLERAIALCKKMKEQGIQ 338
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V + LI + E K EA+++ M+ N ++ Y +I + + RAI
Sbjct: 268 NPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 327
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
K+KE G P Y ++ GRL + + + G+ L+ +T
Sbjct: 328 LCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRT 378
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 9/218 (4%)
Query: 242 LARHHELKVPFK-LENFVSLAS-KGVLEATA--KGFVKGGNLKLAWKLLMVAKDGGRMLD 297
L R EL+ FK LEN V + ++ T +GF + G + A K+L V + G + D
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
Y +I K + +++LD + D+ ++ G Q V++ +
Sbjct: 172 VITYNVMISGYCK-AGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
+ P V+ YT LI + + +A+ ++ M C D+ Y V++
Sbjct: 231 LQRDCY----PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ AI++ + + +G P + ++R ++GR
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Glycine max]
Length = 963
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F +G V + T+I S+ EA ++ ME D + + + L+
Sbjct: 293 VFAEMLKAGVAVDVWTFNTMIFVCGSQGDLAEAEALLGMMEEKGVAPDTKTFNIFLSLYA 352
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
DI A+ + +++EAG CP YR ++ + + + D+ E E A +D+
Sbjct: 353 EARDIGAAVLCYKRIREAGLCPDEVTYRALLGVLCRKNMVREVEDLIDEMERAFVSVDEH 412
Query: 477 TVVELLQI 484
V ++++
Sbjct: 413 CVPGIVEM 420
>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial [Vitis vinifera]
Length = 496
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+ I++ R F V L G P VV YTT++ S ++ EAL + M +
Sbjct: 254 STIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRS 313
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFS-KLKEAGFCPTYDIYRDMIRIFMASGRLA 457
C D Y +I + A+R F ++ + G P Y MI +F +
Sbjct: 314 VGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQ 373
Query: 458 KCRDVCKEAEMAGF-KLDKQTVVELLQ 483
K ++ +E E + F K D QT +L+
Sbjct: 374 KALNLLREIENSTFCKPDIQTYYPVLK 400
>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTL 321
V GF + G+ A K L + G LD + Y +I L GK + +V
Sbjct: 270 VYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIV--- 326
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
E ++ DL T +M + + +++H G +P VV +T+I
Sbjct: 327 --EDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIA 384
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
+ EA++ +A++ + Y V+I D R FSK+ EAG P
Sbjct: 385 KNGQLHEAISYFCTEKANDVM-----YTVLIDALCKEEDFIEVERLFSKISEAGLVPDKF 439
Query: 442 IYRDMIRIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQIE 485
+Y I +CK+ + FKL + V E L+++
Sbjct: 440 MYTSWI------------AGLCKQGNLVDAFKLKTKMVQEGLELD 472
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 13/190 (6%)
Query: 293 GRM-LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-QQDCT---------AI 341
GRM ++Y KLI E G PD L T++D + + L+ + CT +
Sbjct: 352 GRMKAAVNMYHKLI-ERGFEPDVVALS-TMIDGIAKNGQLHEAISYFCTEKANDVMYTVL 409
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ + + F VE LF + +G P MYT+ I + +A + M
Sbjct: 410 IDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGL 469
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
DL AY +I + + A + F ++ +G CP ++ +IR + G + D
Sbjct: 470 ELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRSGVCPDSAVFDLLIRAYEKEGNMTTASD 529
Query: 462 VCKEAEMAGF 471
+ + + G
Sbjct: 530 LLLDMQTRGL 539
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 2/184 (1%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
F K G LKLA K K + + LI K D +V++L +E+ +R ++
Sbjct: 173 FCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGD-LEVVVSLYEEM-RRVRMS 230
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
L+ TA++ + + ++ +P ++YTT+I+ A+
Sbjct: 231 LNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKF 290
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+ M D+ AY V+I + + A +++ P I+ M+ +
Sbjct: 291 LAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFK 350
Query: 453 SGRL 456
SGR+
Sbjct: 351 SGRM 354
>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
camara]
Length = 381
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 3 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 60
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 61 LISEMKTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 120
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 121 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 154
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 3 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 63 SEMKTAGVXPNTTSYSTLLTMYVENK 88
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+V+ YT+LI + EK + ++ M + C ++ Y +V+ A
Sbjct: 294 GFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEA 353
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ F K+K G P Y +I I +GRL V E G
Sbjct: 354 LDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGI 400
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 60/146 (41%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T++++ + F V ++ + G P V+ YT ++H+ + +EAL V ++
Sbjct: 303 TSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKR 362
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
C+ D Y +I + + A F ++ G PT I+ MI +
Sbjct: 363 DGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAEN 422
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQI 484
+ + E K D +T LL++
Sbjct: 423 ALKILVKMEEQSCKPDIKTYTPLLKL 448
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 43/281 (15%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD + ++ L R H+++ + ++S+GV +GFV+ G+++ A
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLM--LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236
Query: 284 KL---------------LMVAKDG----GRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
++ + V +G GR+ D Y + + G PD+ + T ++
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ-ITYNTFVNG 295
Query: 325 LGQRDDLNLSQQDCTAIMKVGIR------------LQKFGVVE---SLFHWFTHSGRDPT 369
L Q D + + + +++ G L K G +E + + G P
Sbjct: 296 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+ + TLI + + + EAL + + D+ + ++I + D A+R F
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
++K +G P Y +I + G+L K D+ K+ E G
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV Y TL+ S +A++V +ME C ++ Y +I F + A
Sbjct: 347 GLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGA 406
Query: 425 IRYFSKLKEAGFCPTYDIYRDMI 447
+ ++K+ +G CP +Y +M+
Sbjct: 407 VYIWNKMLTSGCCPNVVVYTNMV 429
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG P VV+YT ++ + K +EA +++ M NC +P + IK +
Sbjct: 416 SGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDW 475
Query: 424 AIRYFSKLKEAGFCPTYDI-YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A + F ++++ CP + Y +++ + R+ + + +E M G + T LL
Sbjct: 476 AEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLL 535
Query: 483 Q 483
Sbjct: 536 H 536
>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 87/203 (42%), Gaps = 2/203 (0%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
+V+ G+L+ A +++ V KD + I+ ++ Y + + ++L + D
Sbjct: 340 YVQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRG-YEAAVKVYEKLIE-DGCE 397
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
Q + + R+ + E +F G D VV Y++LI + ++A+ +
Sbjct: 398 PGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRL 457
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+ M+ C ++ Y +++++ ++ + + + ++K P Y +I ++
Sbjct: 458 LAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVK 517
Query: 453 SGRLAKCRDVCKEAEMAGFKLDK 475
+ KC +E M G +DK
Sbjct: 518 ASEFEKCEQYYREFRMNGGTIDK 540
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 20/241 (8%)
Query: 254 LENFVSLASKGVLE------ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
LE F + KG+ E A F +KLA L AK + DP+++ KLIL
Sbjct: 280 LEFFRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILM 339
Query: 308 LGKNP--DKYMLVMTLLDELGQRDDLNLSQQDC--TAIMKVGIRLQKFGVVESLFHWFTH 363
+ +K + ++ ++ D + DC AI+ + + ++
Sbjct: 340 YVQQGSLEKALEIVEVMK------DFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIE 393
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD--LPAYRVVIKLFVALNDI 421
G +P V Y + I++ +A + ME FD + AY +I ++ +
Sbjct: 394 DGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKG--FDKCVVAYSSLISMYGKTGRL 451
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481
A+R +K+KE G P IY ++ + + L + + KE + DK + +
Sbjct: 452 KDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSI 511
Query: 482 L 482
+
Sbjct: 512 I 512
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 9/202 (4%)
Query: 259 SLASKGV-LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDK 314
LA+ GV A G + G LK A ++L +D G +D Y LI ++GK +
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEA 444
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
+++ ++ +R N+ TA+ + L H G + + Y
Sbjct: 445 FLVHNKMVQ---KRVTPNVVTY--TALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYN 499
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
+LI+ +A+ + +M+ + D+ Y +I ++ RA ++ +
Sbjct: 500 SLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK 559
Query: 435 GFCPTYDIYRDMIRIFMASGRL 456
G PT Y ++ F SGR+
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGRV 581
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 18/198 (9%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL--GKNPDKYMLVMTLLDELGQR 328
G K GNL+ A + ++ + G D Y +I L K D+ +LL E+
Sbjct: 503 NGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR---AHSLLQEM--- 556
Query: 329 DDLNLSQQDCTAIMKVGIRLQKF---GVVES---LFHWFTHSGRDPTVVMYTTLIHSRLS 382
L + I+ + + F G VE L W P Y +L+
Sbjct: 557 ----LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
EK + + M + + + Y ++IK ++ A+ + S++ E GF T
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672
Query: 443 YRDMIRIFMASGRLAKCR 460
Y +IR+ + + R
Sbjct: 673 YNALIRLLNKKKKFTEAR 690
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 3/177 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG+ + G LK AW+ + K+ +D Y ++ G + + +G+
Sbjct: 260 KGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGE--G 317
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ S A+++V + +F G P + Y +I +A+
Sbjct: 318 ILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAM 377
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ M+ C ++ Y V I+ F D+ + + F K+ + G P D Y +I
Sbjct: 378 EFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQ-GSLPNLDTYNVLI 433
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
VV YTT++H + + A V M L Y +I++ + + A+ F
Sbjct: 287 VVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFE 346
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
++ + G+ P Y +IR +G + K + + + G + + QT
Sbjct: 347 EMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQT 394
>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 87/203 (42%), Gaps = 2/203 (0%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332
+V+ G+L+ A +++ V KD + I+ ++ Y + + ++L + D
Sbjct: 340 YVQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRG-YEAAVKVYEKLIE-DGCE 397
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
Q + + R+ + E +F G D VV Y++LI + ++A+ +
Sbjct: 398 PGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRL 457
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+ M+ C ++ Y +++++ ++ + + + ++K P Y +I ++
Sbjct: 458 LAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVK 517
Query: 453 SGRLAKCRDVCKEAEMAGFKLDK 475
+ KC +E M G +DK
Sbjct: 518 ASEFEKCEQYYREFRMNGGTIDK 540
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 20/241 (8%)
Query: 254 LENFVSLASKGVLE------ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
LE F + KG+ E A F +KLA L AK + DP+++ KLIL
Sbjct: 280 LEFFRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILM 339
Query: 308 LGKNP--DKYMLVMTLLDELGQRDDLNLSQQDC--TAIMKVGIRLQKFGVVESLFHWFTH 363
+ +K + ++ ++ D + DC AI+ + + ++
Sbjct: 340 YVQQGSLEKALEIVEVMK------DFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIE 393
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD--LPAYRVVIKLFVALNDI 421
G +P V Y + I++ +A + ME FD + AY +I ++ +
Sbjct: 394 DGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKG--FDKCVVAYSSLISMYGKTGRL 451
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481
A+R +K+KE G P IY ++ + + L + + KE + DK + +
Sbjct: 452 KDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSI 511
Query: 482 L 482
+
Sbjct: 512 I 512
>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCT 339
WK+ G + + +Y L+ K +P+K +++ ++E G D+ +
Sbjct: 187 VWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLIS 246
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
K + + V + + SG P +V Y + IH E + REA T ++
Sbjct: 247 VYCKKSMHFEALSVQDRM----ERSGVAPNIVTYNSFIHGFSREGRMREA-TRLFREIKD 301
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
+ + Y +I + +NDI A+R ++ GF P Y ++R GR+ +
Sbjct: 302 DVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREA 361
Query: 460 RDVCKEAEMAGFKLD 474
+ EM+G K++
Sbjct: 362 NRLL--TEMSGKKIE 374
>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 282 AWKLLMVAKDG--GRMLDPSIYAKL-ILELGKNPDKYML--VMTLLDELGQRDDLNLSQQ 336
+K L++ G GR +D +I L ++ G PDK ++ + L E+G+ L +
Sbjct: 769 TYKYLIICLCGRKGRKVDEAIKTFLEMIRAGYVPDKELVESYLKCLCEVGKL----LDAR 824
Query: 337 DCT-AIMKVG----------IR-LQKFGVVESLFHWFTHSGRDPTVV---MYTTLIHSRL 381
CT A+ K+G IR L + G +E G + + +Y +L+H L
Sbjct: 825 RCTEALCKLGFTIPLSYSLYIRALCRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLL 884
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
+ +EAL V +M+ + Y +I F + +A+ F K+KE G PT
Sbjct: 885 RRGRLKEALEKVDSMKQIGIHPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIV 944
Query: 442 IYRDMIRIFMASGRLAKCRDV 462
Y +IR MA G R+V
Sbjct: 945 TYSALIRGHMAMGNFVDARNV 965
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PTV +YT+LI EK+ R+AL M+ C + Y +I+ +A+ + A
Sbjct: 903 GIHPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDA 962
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
F L+ G P + Y I G+
Sbjct: 963 RNVFGLLQLKGPFPDFKTYSMFISCLCKVGK 993
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 9/202 (4%)
Query: 259 SLASKGV-LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDK 314
LA+ GV A G + G LK A ++L +D G +D Y LI ++GK +
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEA 444
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
+++ ++ +R N+ TA+ + L H G + + Y
Sbjct: 445 FLVHNKMVQ---KRVTPNVVTY--TALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYN 499
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
+LI+ +A+ + +M+ + D+ Y +I ++ RA ++ +
Sbjct: 500 SLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK 559
Query: 435 GFCPTYDIYRDMIRIFMASGRL 456
G PT Y ++ F SGR+
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGRV 581
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 18/198 (9%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL--GKNPDKYMLVMTLLDELGQR 328
G K GNL+ A + ++ + G D Y +I L K D+ +LL E+
Sbjct: 503 NGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR---AHSLLQEM--- 556
Query: 329 DDLNLSQQDCTAIMKVGIRLQKF---GVVES---LFHWFTHSGRDPTVVMYTTLIHSRLS 382
L + I+ + + F G VE L W P Y +L+
Sbjct: 557 ----LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
EK + + M + + + Y ++IK ++ A+ + S++ E GF T
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672
Query: 443 YRDMIRIFMASGRLAKCR 460
Y +IR+ + + R
Sbjct: 673 YNALIRLLNKKKKFTEAR 690
>gi|295830913|gb|ADG39125.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+++ YTTL+ + +K L+++ +E + D + +I ++ +A
Sbjct: 5 GHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 64
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ F K+KE+G PT + +I+ + G+L
Sbjct: 65 MKIFEKMKESGCKPTTSTFNTLIKGYGKJGKL 96
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E+L + G PTVV Y +IH L ++ A M A L D+ Y ++
Sbjct: 327 AEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLN 386
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+ ++ A+ L+ AG PT Y +I + G LA+ R + +E G
Sbjct: 387 RYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFP 446
Query: 474 DKQTVVELLQIEKESR 489
D T L+ ++ R
Sbjct: 447 DVCTYTILMNGSRKVR 462
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P +YT+++ + + +ALTVV +M + D Y V+ F D+ A
Sbjct: 324 GVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSA 383
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
R+F +++ G Y +I +G L + V + EM +LD V + +
Sbjct: 384 RRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQ--EMLARRLDVDEVTYTVLV 441
Query: 485 EKESRIGTI 493
+ + G +
Sbjct: 442 DGYCKRGKM 450
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 2/189 (1%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A G + G LK A ++L D G +D Y LI K + + +G+
Sbjct: 397 ALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGR 456
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R N+ TA+ + L H + G + V Y +LI+
Sbjct: 457 RVAPNVVTY--TALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLE 514
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+A+ ++ MEA+ D+ Y +I + RA ++ + G P+ Y ++
Sbjct: 515 QAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLM 574
Query: 448 RIFMASGRL 456
F SGR+
Sbjct: 575 NGFCMSGRV 583
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 33/226 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDEL 325
A + G K G+++ A +LL + G L+ Y LI L K N ++ M +MT ++
Sbjct: 467 ALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAA 526
Query: 326 GQRDDL--------------------NLSQQDCT-----AIMKVGIRLQKF---GVVES- 356
G R D+ N+ Q+ +I + + F G VE
Sbjct: 527 GHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGG 586
Query: 357 --LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
L W P VV Y +L+ +K + + M + + Y ++IK
Sbjct: 587 KKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKG 646
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
++ A+ + ++ E G T Y +IR+ + ++ R
Sbjct: 647 HCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEAR 692
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 90/256 (35%), Gaps = 43/256 (16%)
Query: 242 LARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY 301
L R H+ VPF + VLE F+K KL W +
Sbjct: 91 LTREHKFWVPFD-------TCRKVLEH----FMKLKYFKLVWG----------------F 123
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR------------LQ 349
K ILE G P L+ + ++ L+Q I K G+R
Sbjct: 124 YKEILECGY-PASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182
Query: 350 KFGVVESLFHW---FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ G ++ F SG P V Y+ LI+ E K +A + M + + +
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGV 242
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
+ +I I A+ + ++ GF P Y +I G L + +D+ E
Sbjct: 243 TFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 467 EMAGFKLDKQTVVELL 482
M G K DK T L+
Sbjct: 303 SMKGLKPDKITYTTLI 318
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIR--LQKFGV-VESLF---------HWFTH---SG 365
L++ G+ ++N++ ++K GIR L+ + + VE LF H+F +G
Sbjct: 934 LINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTG 993
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
DP V Y +I+ ++ EAL++ M+ +L Y +I F + +A
Sbjct: 994 LDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAG 1053
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481
+ F +L+ G P Y +IR SG + V K+ + G + T +L
Sbjct: 1054 KMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P + Y TLI L+ ++ EAL + NME+ +Y + I + L D +A
Sbjct: 397 GIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKA 456
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL-- 482
+ F K+K+ G P+ + GR+ + +D+ + G D T ++
Sbjct: 457 LDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKC 516
Query: 483 -----QIEKESRIGT 492
QI+K +++ T
Sbjct: 517 YSKAGQIDKATKLLT 531
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 58/150 (38%)
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
S + +A+M R + G + L G P + YT I + +A ++
Sbjct: 226 SMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGIL 285
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
ME C D+ Y V+I A + +A ++K++ + P Y ++ F
Sbjct: 286 KTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNY 345
Query: 454 GRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G L + E E G+ D T L++
Sbjct: 346 GDLETVKRFWSEMEADGYAPDVVTYTILVE 375
>gi|357129672|ref|XP_003566485.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 564
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
ELG D+ T + +VG + +GV+E W G P V YT ++ E
Sbjct: 177 ELGVEADVGTYSTLVTGLCRVGRTGEAWGVLE----WMLEEGCYPMVQTYTPIVQGYCHE 232
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+ EA+ V+ ME + C ++ Y V+I+ AL D +R
Sbjct: 233 GRVEEAMEVMATMERAGCPPNVVTYNVLIR---ALCDAAR 269
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 88/243 (36%), Gaps = 43/243 (17%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI------------------LEL- 308
A KG+VK G+LK A ++L G D + Y+ L+ +E
Sbjct: 297 ALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 356
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK----VGIR---------LQKFGVVE 355
G P Y+ L G RD Q A+++ G+R + FG
Sbjct: 357 GVKPSSYVFSRILA---GFRD--RGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYN 411
Query: 356 SLFHWFT------HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
L H G +P VV + TLI + + A+ + M SNC Y
Sbjct: 412 CLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYN 471
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++I L +++KE G P Y ++ ++ SGR + D + +
Sbjct: 472 IMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKAD 531
Query: 470 GFK 472
G K
Sbjct: 532 GLK 534
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 10/217 (4%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGK--NPDKYMLVMTLLDELG 326
GF K GNL L+++++ G+ L P++ Y LI + K N + + + + G
Sbjct: 320 NGFCKEGNLH--QGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRG 377
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
R + + G+ + + V+ + SG P+VV Y L+H +
Sbjct: 378 LRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIV----SGFSPSVVTYNALVHGYCFLGRV 433
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+EA+ ++ M D+ +Y VI F ++ +A + ++ E G P Y +
Sbjct: 434 QEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSL 493
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
I+ +L + D+ +E G D+ T L+
Sbjct: 494 IQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLIN 530
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV Y TLI + +KK +EA+ ++ M +L +Y VI +S
Sbjct: 237 GISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEV 296
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+++ G P Y ++ F G L + + +EM G L V I
Sbjct: 297 GELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQ--GLVLLSEMVGKGLSPNVVTYTTLI 354
Query: 485 EKESRIGTI 493
+ G +
Sbjct: 355 NCMCKAGNL 363
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 120/317 (37%), Gaps = 16/317 (5%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKG-SLSFTVRELGHMNLPERALQTFCWAQKQPHL 228
L R++ SH+DV +VLD R + ++ V EL + + W +
Sbjct: 20 LMRNVIAQKSHQDVWDVLDALPRGIGTWEAIMENVAELRRLRNWRSVILILEWILQGTMF 79
Query: 229 FPDDRLLASTVEVLARHHELKVPFK----LENFVSLASKGVLEATAKGFVKGGNLKLAWK 284
PD ++ + + + K +++F L ++ + +G L+ A K
Sbjct: 80 KPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEK 139
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL--NLSQQDCT-AI 341
L K+ P +I + Y+ V+ L Q +D ++ +Q A+
Sbjct: 140 LFHEMKESN--YSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAV 197
Query: 342 MKVGIRLQKFGVV------ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
I + +G + LF + P + YT L+++ E C A +
Sbjct: 198 NTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAE 257
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+++ + D+ Y +++ + + A F + EAG P Y +I F +G
Sbjct: 258 LQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGL 317
Query: 456 LAKCRDVCKEAEMAGFK 472
A + V + AGFK
Sbjct: 318 TADAQAVYDSMKEAGFK 334
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 55/136 (40%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA+M R E +F G P V Y L+ + + A V M
Sbjct: 236 TALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVE 295
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ D +Y ++I F + A + +KEAGF PT + ++ + +G++ +
Sbjct: 296 AGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTE 355
Query: 459 CRDVCKEAEMAGFKLD 474
+ +E E +G K D
Sbjct: 356 AERLVREIENSGVKPD 371
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G M+ L+ + L E +A+ + M + D Y + I
Sbjct: 178 ALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITAL 237
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
L D RA+R ++KE GF YR M+ + + +GR+ + V E AG K+D
Sbjct: 238 CKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDV 297
Query: 476 QTVVELLQ 483
L++
Sbjct: 298 IVATTLMR 305
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L T G P+ + ++ L++++ ++A+ + M A + L D+ Y +I
Sbjct: 354 LCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEM-ADSGLPDVFTYNNLIHWHC 412
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ + A+ F ++K+AG P+ + Y ++ + G + + + E M GFK +
Sbjct: 413 QAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVV 472
Query: 477 TVVELLQ 483
T + L++
Sbjct: 473 TYITLMR 479
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 24/246 (9%)
Query: 228 LFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKL 281
L PD + ++ L + ++ L F S+ +KGV A G+ K G + +
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTL--FDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527
Query: 282 AWKLLMVAKDGGRMLD----PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337
A+ LL RML+ P+ Y +L G +K M + L + + + +
Sbjct: 528 AYSLL------ERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSL--VAKMLTMGVKPTV 579
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVW 394
T + +G + K G + F H G P V YT +H+ S+ E V+
Sbjct: 580 VTYTILIG-EMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638
Query: 395 NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
M L DL Y V+I + L RA + + + G P+ I +I+
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698
Query: 455 RLAKCR 460
R+ + R
Sbjct: 699 RMKETR 704
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 4/220 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K +L+ A++LL + + G + D Y+ I L K + TL D + + +
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKE-GRVEEAGTLFDSVKAKG-V 505
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
++ TA++ ++ K V SL + P Y LI EKK +EA +
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+V M + Y ++I + A++ F+ + G+ P Y + +
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
+ G L + DV + G D T L I+ +R+G
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTYTVL--IDGYARLG 663
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 14/178 (7%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN-------LSQQDC------- 338
G +++ +YA I++ G +PD + +L + N + Q+ C
Sbjct: 208 GNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSY 267
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + LF T PTV YT LI++ + EAL + M+
Sbjct: 268 TNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE 327
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C ++ Y V+I N + A + S++ E G P+ Y +I + G +
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%)
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
+G P YT+LI K A V M C + +Y +I
Sbjct: 220 IVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGR 279
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
I+ A++ F+ + E CPT Y +I SGR + ++ E + G + + T
Sbjct: 280 INEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339
Query: 481 LL 482
L+
Sbjct: 340 LI 341
>gi|87162841|gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1053
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA++ +L + V L G D VV+Y+ + + EK E + M
Sbjct: 185 TAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVE 244
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
D +Y ++I F L D+ ++ + +K+ + G P Y ++ + GR+ +
Sbjct: 245 KGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEE 304
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
+ + G +LD+ V L I+ R+G
Sbjct: 305 AFGLFVRMKDMGIELDEFVFVVL--IDGFGRVG 335
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 15/224 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML-VMTLLDELGQRDD 330
G KGG L A L + + G L+ IY +I G D ++ L D L +
Sbjct: 706 GLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIIN--GLCHDGCLIEAFRLFDSL---EK 760
Query: 331 LNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
LNL + T ++ R E +F +G P +Y +L+ + + +
Sbjct: 761 LNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEK 820
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A ++ +ME FD VI + D+ A+ ++ K K P + + MIR
Sbjct: 821 AFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIR 880
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGT 492
GR+ + R V +E L + V E++ I SR+ T
Sbjct: 881 GLCTKGRMEETRSVLREM------LQSKNVAEMINI-VNSRVDT 917
>gi|295830915|gb|ADG39126.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+++ YTTL+ + +K L+++ +E + D + +I ++ +A
Sbjct: 5 GHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 64
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ F K+KE+G PT + +I+ + G+L
Sbjct: 65 MKIFEKMKESGCKPTTSTFNTLIKGYGKIGKL 96
>gi|357449533|ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484091|gb|AES65294.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1070
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA++ +L + V L G D VV+Y+ + + EK E + M
Sbjct: 202 TAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVE 261
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
D +Y ++I F L D+ ++ + +K+ + G P Y ++ + GR+ +
Sbjct: 262 KGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEE 321
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
+ + G +LD+ V L I+ R+G
Sbjct: 322 AFGLFVRMKDMGIELDEFVFVVL--IDGFGRVG 352
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 15/224 (6%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML-VMTLLDELGQRDD 330
G KGG L A L + + G L+ IY +I G D ++ L D L +
Sbjct: 723 GLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIIN--GLCHDGCLIEAFRLFDSL---EK 777
Query: 331 LNLSQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
LNL + T ++ R E +F +G P +Y +L+ + + +
Sbjct: 778 LNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEK 837
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A ++ +ME FD VI + D+ A+ ++ K K P + + MIR
Sbjct: 838 AFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIR 897
Query: 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGT 492
GR+ + R V +E L + V E++ I SR+ T
Sbjct: 898 GLCTKGRMEETRSVLREM------LQSKNVAEMINI-VNSRVDT 934
>gi|116791998|gb|ABK26193.1| unknown [Picea sitchensis]
Length = 262
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +++ +LQK F G +YT +I + KK +A ++ M+
Sbjct: 34 TIVIRALSKLQKMEEASKFFAEMQEHGSPLDAAVYTCMITGYGNTKKLDKAYVLLQEMKE 93
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
D Y +IK+ + L+ A + F K+ + GF PT Y +++++
Sbjct: 94 KGIPHDCRTYNALIKVMMVLHKPDEATKLFEKMSQCGFQPTIHTYNMLMKLY 145
>gi|295830909|gb|ADG39123.1| AT5G21222-like protein [Capsella grandiflora]
gi|295830919|gb|ADG39128.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+++ YTTL+ + +K L+++ +E + D + +I ++ +A
Sbjct: 5 GHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 64
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ F K+KE+G PT + +I+ + G+L
Sbjct: 65 MKIFEKMKESGCKPTTSTFNTLIKGYGKJGKL 96
>gi|295830917|gb|ADG39127.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+++ YTTL+ + +K L+++ +E + D + +I ++ +A
Sbjct: 5 GHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 64
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ F K+KE+G PT + +I+ + G+L
Sbjct: 65 MKIFEKMKESGCKPTTSTFNTLIKGYGKIGKL 96
>gi|295830911|gb|ADG39124.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+++ YTTL+ + +K L+++ +E + D + +I ++ +A
Sbjct: 5 GHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 64
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ F K+KE+G PT + +I+ + G+L
Sbjct: 65 MKIFEKMKESGCKPTTSTFNTLIKGYGKIGKL 96
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 24/247 (9%)
Query: 253 KLENFVSLASKGVLEAT----------AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA 302
+L++ + L +K +LE GF K G +K + + G + Y
Sbjct: 247 QLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYC 306
Query: 303 KLILELGKNPDKYMLVM------TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
L+ D Y LV ++L + QR +N Q ++ +++K +
Sbjct: 307 SLM-------DGYCLVKEVNKAKSILYTMSQRG-VNPDIQSYNILIDGFCKIKKVDEAMN 358
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF H P VV Y +LI K AL +V M D+ Y ++
Sbjct: 359 LFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALC 418
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ + +AI +KLK+ G P Y +I GRL ++ ++ + G+ +
Sbjct: 419 KNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVN 478
Query: 477 TVVELLQ 483
T ++
Sbjct: 479 TYTVMIH 485
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G K G + A KL+ D G D Y+ ++ L KN DK + ++T L + G R
Sbjct: 381 GLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRP 440
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
++ + K G RL+ ++F G + TV YT +IH ++ EA
Sbjct: 441 NMYTYTILIDGLCKGG-RLED---AHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEA 496
Query: 390 LTVVWNMEASNCLFDLPAYRVVIK 413
L ++ M+ ++C+ D Y ++I+
Sbjct: 497 LALLSKMKDNSCIPDAVTYEIIIR 520
>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
+G P V Y+TL+ + K EAL+V M+ NC DL ++I ++ L+ +
Sbjct: 155 NEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMV 214
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
A R F L++ P Y ++R++
Sbjct: 215 KEADRLFWSLRKMDIEPNVVSYNTILRVY 243
>gi|295830921|gb|ADG39129.1| AT5G21222-like protein [Neslia paniculata]
Length = 166
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P+++ YTTL+ + +K L+++ +E + D + +I ++ +A
Sbjct: 5 GHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 64
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
++ F ++KE+G PT + +I+ + G+L K + + EM
Sbjct: 65 MKIFEQMKESGCKPTTSTFNTLIKGY---GKLGKLEESSRLLEM 105
>gi|242035667|ref|XP_002465228.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
gi|241919082|gb|EER92226.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
Length = 557
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 3/131 (2%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
FG V H +G P V+Y +IH + EAL V ++ D Y
Sbjct: 228 NFGKVSDTLHLMISTGCTPDKVIYQRVIHGLFRRRMGGEALRVFREIKQRGYQIDRIIYS 287
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
VI + I A + + ++ + G P Y ++ + G L K R V E
Sbjct: 288 TVIHGLCEMRLIGDAQQMWDEMVDRGIQPNEYAYCSLVSYYCRVGDLEKARKVYDEMLAK 347
Query: 470 GFKLDKQTVVE 480
GF KQT V
Sbjct: 348 GF---KQTTVS 355
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/282 (19%), Positives = 99/282 (35%), Gaps = 51/282 (18%)
Query: 204 RELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLA---RHHELKVPFKLE-NFVS 259
R L + P+ A F WA +P + A + RH E K E +
Sbjct: 48 RVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLC 107
Query: 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVM 319
++ + GF K G + A++LL K+ G +D +++ LI L +
Sbjct: 108 FPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRK-------- 159
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD--PTVVMYTTLI 377
G ++ F G + P V+ Y T++
Sbjct: 160 --------------------------------GRIDEALEQFKSMGEECSPNVITYNTVV 187
Query: 378 HSRLSEKKCREALTVVWNME-----ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
+ + EAL + +ME + C D+ +Y VI + +A YF +++
Sbjct: 188 NGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMR 247
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
G P Y +I R ++C ++ + GF ++
Sbjct: 248 AVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGIN 289
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 88/243 (36%), Gaps = 43/243 (17%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI------------------LEL- 308
A KG+VK G+LK A ++L G D + Y+ L+ +E
Sbjct: 297 ALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 356
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK----VGIR---------LQKFGVVE 355
G P Y+ L G RD Q A+++ G+R + FG
Sbjct: 357 GVKPSSYVFSRILA---GFRD--RGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYN 411
Query: 356 SLFHWFT------HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
L H G +P VV + TLI + + A+ + M SNC Y
Sbjct: 412 CLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYN 471
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++I L +++KE G P Y ++ ++ SGR + D + +
Sbjct: 472 IMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKAD 531
Query: 470 GFK 472
G K
Sbjct: 532 GLK 534
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
LL E+ ++D + + ++ R ++ +E++ G D V Y + I S
Sbjct: 315 LLHEM-EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSY 373
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
LS +AL + +M SN D Y ++I L + ++R+F + ++ T
Sbjct: 374 LSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTK 433
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++Y +I ++ G+L++ + +G D T L+Q
Sbjct: 434 EVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQ 476
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 32/218 (14%)
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334
K GN+ A +L V G + D Y+ L+ D Y LV +++N +
Sbjct: 281 KDGNITRAKNMLAVMMKQGVIPDVVTYSSLM-------DGYCLV----------NEVNKA 323
Query: 335 QQDCTAIMKVGIR------------LQKFGVVE---SLFHWFTHSGRDPTVVMYTTLIHS 379
+ + + ++G+ L K +V+ SLF G P V Y +LI
Sbjct: 324 KHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDG 383
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
+ A +V M + D+ Y +I + + I +AI K+K+ G P+
Sbjct: 384 LCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPS 443
Query: 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
Y +I GRL +DV ++ + G+ ++ T
Sbjct: 444 MYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWT 481
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 350 KFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G VE + + +G DP YT+LI K A V M C +
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEV 289
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
AY +I I A+ F K+K+ PT Y +I+ S R ++ ++ KE
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEM 349
Query: 467 EMAGFKLDKQTVVELL 482
E G K + T L+
Sbjct: 350 EETGIKPNIHTYTVLI 365
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 16/206 (7%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G + + + Y I+E G +PD + +L+ QR DL+ + + + G R +
Sbjct: 232 GNVEEANQYVSKIVEAGLDPD-FFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 353 V------------VESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNME 397
++ F D PTV YT LI S ++ EAL +V ME
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ ++ Y V+I + +A ++ E G P Y +I + G +
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQ 483
DV + E + +T EL++
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIK 436
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G +P VVMYT LI K EA ++ M + NCL + + +I
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
A + A K+ + G PT +I + G ++ +G K D
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 477 TVVELLQ 483
T +Q
Sbjct: 639 TYTTFIQ 645
>gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 881
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 16/220 (7%)
Query: 214 RALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGF 273
+A F Q+Q L+PD ++ + + L + + K F S+ +G E A
Sbjct: 312 KAFHLFTDMQEQG-LYPDPKIFVTIISCLGEQGKWDIIKKY--FESMKIRGNKEYGAVYA 368
Query: 274 V------KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDEL 325
V + G + A + + K G ++ PSI+ L + ++ ++V+ +++
Sbjct: 369 VLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAE 428
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
G ++ + A G ++ S++H SG P VV YTTL+ + + KK
Sbjct: 429 GIEPNIVMLNMLINAFGNAGRYMEAI----SVYHHIKESGVSPDVVTYTTLMKAFIRAKK 484
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
E + ME C D A R ++++ + L D R I
Sbjct: 485 FDEVPIIYKEMENDGCTPDRKA-RQMLQVALTLIDHDRLI 523
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 102/260 (39%), Gaps = 11/260 (4%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAWK 284
D + S ++ ++ EL KL F + +GV + K K G+ A+
Sbjct: 258 DTHICNSIIDTFGKYGELDEALKL--FKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFH 315
Query: 285 LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344
L ++ G DP I+ +I LG+ K+ ++ + + R + +
Sbjct: 316 LFTDMQEQGLYPDPKIFVTIISCLGEQ-GKWDIIKKYFESMKIRGNKEYGAVYAVLVDIY 374
Query: 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
G + KF G + ++ L ++ + C + + V+ MEA +
Sbjct: 375 G-QYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPN 433
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+ ++I F AI + +KE+G P Y +++ F+ + + + + K
Sbjct: 434 IVMLNMLINAFGNAGRYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVPIIYK 493
Query: 465 EAEMAGFKLDKQTVVELLQI 484
E E G D++ ++LQ+
Sbjct: 494 EMENDGCTPDRKA-RQMLQV 512
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%)
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
C ++ +L K V+ F +G PTV Y +I E A + M+
Sbjct: 101 CNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMK 160
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D Y +I + + + + +F ++K P Y +I F SG+L
Sbjct: 161 FRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLP 220
Query: 458 KCRDVCKEAEMAGFK 472
K + +E + +G K
Sbjct: 221 KGLEFYREMKQSGLK 235
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G + VV YT LI ++ +EA + M + + +L +Y +I FV ++ RA
Sbjct: 303 GVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRA 362
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ ++LK G P +Y I ++ + V E + G K + L+
Sbjct: 363 LELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLM 420
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S F G P + Y+ +IHS K +EA+ V + + D+ Y +I F
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
DI +A + + ++ G P +Y +I G + K R++ E E
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIE 723
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 14/246 (5%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA------KGFVKGGNLKLAW 283
P+ + + + ++ E++V + F + S G++ KG GN A
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVAERY--FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611
Query: 284 KLLMVAKDGGRMLDPSIYAKLILELGKN--PDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341
+ G + D Y+ +I L KN + M V + G D+ L +
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
K G ++K L+ H+G +P +V+Y TLI+ + +A + +E +
Sbjct: 672 CKEG-DIEK---ASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDL 727
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
+ D+ Y +I + +++ A + F ++ G P IY +I G L K
Sbjct: 728 VPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALS 787
Query: 462 VCKEAE 467
+ EA+
Sbjct: 788 LFHEAQ 793
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 12/227 (5%)
Query: 272 GFVKGGNLKLAWKLL--MVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQ 327
G+ K GNL A+KL M++K G D IY LI GK N +K ++L E Q
Sbjct: 740 GYCKSGNLTEAFKLFDEMISK--GISPDGYIYCILIDGCGKEGNLEK---ALSLFHEAQQ 794
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
+ +LS + +++ + K LF P +V YT LI + +
Sbjct: 795 KSVGSLSAFN--SLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMME 852
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EA + +ME N + + Y ++ + + + + I F ++ G Y M
Sbjct: 853 EAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMA 912
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL-QIEKESRIGTI 493
+ G+ + + ++ + G KL+ L+ + KE +I T+
Sbjct: 913 SAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTV 959
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F SG +P YT LI + E EAL + M ++ Y +I
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++++A+ F+++ AG P Y +I ++ S +AK ++ AEM KL
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELL--AEMKARKL 447
>gi|125536538|gb|EAY83026.1| hypothetical protein OsI_38244 [Oryza sativa Indica Group]
Length = 1117
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 107/294 (36%), Gaps = 38/294 (12%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLA----SKGVLEATA 270
ALQ F W K+ + + + +++ + K L + A +
Sbjct: 739 ALQFFSWVGKRSYYMQTTKTYNTAIKLAGSAKDFKHMRHLYREMIWAECCPTVNTWNVMI 798
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---------------------G 309
+ G ++A + K GG D + Y+ LI+ L G
Sbjct: 799 CQYGNAGLTEMALETFYQMKQGGFQPDKTTYSHLIMYLSRRKGRKVDAAVKIFHEMCRAG 858
Query: 310 KNPDKYML--VMTLLDELGQRDDLNLS-----------QQDCTAIMKVGIRLQKFGVVES 356
PD M+ +++L E G D S Q + +++ R + S
Sbjct: 859 YIPDNGMVRTYLSVLCECGMIDRAESSVVLLCKHGFSIQAGYSILIRSLCRSDRMAEALS 918
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF + G + MY +LIH L + +A + M+ Y + ++
Sbjct: 919 LFDNIKNYGCSRSAYMYGSLIHVLLRRDRFEDASAKLAEMKNLGIAQSTHMYTSFMIYYL 978
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
D+S+A+ ++ E G PT Y +IR MA G +++ DV + ++ G
Sbjct: 979 GKRDVSKAMDVLKEMTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKG 1032
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P Y LI S S + EAL+++ ME+S C ++ Y +I F
Sbjct: 443 LFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFC 502
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
I A F +++ G Y +I + R+ + + + M G K DK
Sbjct: 503 KNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKF 562
Query: 477 TVVELL 482
T LL
Sbjct: 563 TYNSLL 568
>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
micrantha]
Length = 406
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%)
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L+ + ME DL Y +I+L L D S+AI FS+LK +GF P Y MI +
Sbjct: 1 LSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINV 60
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
F + + R + E + AG + + LL + E++
Sbjct: 61 FGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENK 100
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 15 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 72
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 73 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 132
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 133 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 166
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 14/261 (5%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV----LEATAKGFVKGGNLKLAWKL 285
P++ S ++ + +L FKLE+ + A + A G + G ++ A +L
Sbjct: 389 PNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEEL 448
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNPDKYM-LVMTLLDELGQRD---DLNLSQQDCTAI 341
G L+ IY L G K M M +L+E+ +++ DL L +
Sbjct: 449 FGALLKAGWTLNQQIYTSLFH--GYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGL 506
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+ V+ + G +YTTLI + K EA+ ++ M+
Sbjct: 507 CRQNEIEDSMAVIREMMD----CGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGI 562
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
+ Y V+I + + +A+RYF + G P IY +I + L + ++
Sbjct: 563 KITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKN 622
Query: 462 VCKEAEMAGFKLDKQTVVELL 482
+ E G DK L+
Sbjct: 623 LFNEMLDKGISPDKLVYTSLI 643
>gi|357484175|ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 350 KFGVVE---SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G +E +++ G P++++Y +L+H REA+ ++ M ++NC
Sbjct: 465 KEGAIEDAKNIYDKMIDEGGIPSILVYNSLVHGFSQHGSIREAVELINEMISNNCFPIAS 524
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
+ +I F I A+++ + G P + Y +I + G + K V
Sbjct: 525 TFNAIITEFCEQGKIESALKFMEDITARGCVPNTETYSPLIDVLCRKGDIQKALQV 580
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 109/272 (40%), Gaps = 11/272 (4%)
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHH-ELKVPFKLENFVSLA 261
VR L + R + A K H P ++ S ++VL + ++ F ++ +
Sbjct: 114 VRGLSRAGMTRRVITVLDLAYK-FHGTPSLKIFNSILDVLVKEDIDMAREFYRKSMMESG 172
Query: 262 SKG---VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLV 318
+G KG + +KLL + K+ G + IY L+ L +N K
Sbjct: 173 VRGDDYTFGILMKGLCLTNRIGEGFKLLQLIKNNGVTPNTVIYNTLLHALCRN-GKVGRA 231
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+L++E+ +++ + ++ K +Q ++E F P VV T ++
Sbjct: 232 RSLMNEMVDPNEVTFNIL-ISSYYKEENLVQALVLLEKCFAL----SLVPDVVTVTKVVE 286
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+ + EA V+ +E+ D AY +IK F + + + + +++ G+ P
Sbjct: 287 ILCNAGRVTEAAEVLERVESLGGSLDAVAYNTLIKGFCGVGKVKVGLHFLKQMENKGYLP 346
Query: 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
D Y +I F S L D+ + + G
Sbjct: 347 NVDTYNILIYGFCESRMLDLALDLFNDMKTDG 378
>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL +G P V Y+TL+ + +K EAL+V M CL DL ++I ++
Sbjct: 100 SLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L+ A + F +++ G P Y ++R++
Sbjct: 160 GQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVY 194
>gi|225456884|ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 114/284 (40%), Gaps = 17/284 (5%)
Query: 184 AEVLDKCGRFLRKGSLSFTVRELGHM-NLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242
+EV K G S +F + L + P +AL+ F W + P VL
Sbjct: 216 SEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSSITYNVIARVL 275
Query: 243 ARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRML 296
R + + + + SKG ++ F K L+ A KL + DG
Sbjct: 276 GRDDSIGEFWSMVE--EMKSKGHEMDIDTYIKISRQFQKNKMLEDAVKLYEIMMDGP--Y 331
Query: 297 DPSIYAKLIL----ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
PS+ +L L NPD + ++ + E + +L + I + + +F
Sbjct: 332 KPSVQDCTMLLRSISLSSNPD--LALVFRVTEKYEAVGNSLCKAVYDGIHRSLTSVGRFD 389
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
+ +G +P + Y+ L++ +K EA ++ MEA C+ D+ + ++I
Sbjct: 390 EAGKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLLDEMEACGCVPDIKTWTILI 449
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ A ++ +A+ F+K+ E D+ +I F++ R+
Sbjct: 450 QGHCAAKEVDKALICFAKMMEKNCDADADLLEVLINGFLSQKRI 493
>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
Length = 927
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 61/316 (19%), Positives = 116/316 (36%), Gaps = 26/316 (8%)
Query: 181 KDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE 240
+++ VLD+C L + + H P A + FCWA ++ + R + +
Sbjct: 220 RNMEAVLDECNVDLSHALVVGVLERFKHARKP--AFRFFCWAGQKAGFTHNSRTYNAMMS 277
Query: 241 VLARHHEL------------KVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288
VL R + K +E F K V L +
Sbjct: 278 VLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAG 337
Query: 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
+LD AKL E L ++L R NL + T ++ R+
Sbjct: 338 VDTINCLLDNLGRAKLGKE----------AQALFEKLEDRFTPNL--RTYTVLLNGWCRI 385
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
+ ++ G P ++ + T++ L KK +A+ + M+A ++ Y
Sbjct: 386 KNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTY 445
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
++I+ + A+ YF ++ ++G P +Y +I F ++ K + KE +
Sbjct: 446 TILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKE 505
Query: 469 AGFKLDKQTVVELLQI 484
G D +T L+++
Sbjct: 506 KGCPADGRTYNALIKL 521
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F SG P +YT LI ++KK + ++ M+ C D Y +IKL
Sbjct: 465 FDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTN 524
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
A+R + K+ + G PT Y M++ +
Sbjct: 525 RQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSY 557
>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
Length = 507
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 32/221 (14%)
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKN---PDKYMLVMTLLDELGQRDDLNLSQQD 337
L + ++M AK R LD + KL+ E+GKN PD Y + LL LG+ D +
Sbjct: 288 LTYNVVMRAKYMLRKLDQ--FHKLLDEMGKNGLAPDLYTYNL-LLHVLGKGD------KP 338
Query: 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN-M 396
A+ +L ++ + G PTV+ +T LI LS EA ++ M
Sbjct: 339 LAAL--------------NLLNYMSDVGCVPTVLHFTNLIDG-LSRAGNLEACKYFFDEM 383
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C D+ Y V+I +VA + A ++F + G P Y MI G
Sbjct: 384 VKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIVGEF 443
Query: 457 AKCRDVCKEAEMAG----FKLDKQTVVELLQIEKESRIGTI 493
K + K+ E G F + V L K+S I
Sbjct: 444 DKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNI 484
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF GR P VV Y+ LI K +A ++ MEA C+ ++ Y +I
Sbjct: 457 TLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGL 516
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
L+ + A+ F + E G P Y +I
Sbjct: 517 CGLDKVDEALELFVAMVEKGCVPDTITYGTII 548
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 21/168 (12%)
Query: 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
A+ GR+ + ++E G+ PD + L+D LG+ L+ +++
Sbjct: 446 ARQEGRIKEAITLFDAMIEKGRVPD-VVTYSALIDGLGKAGKLDDARR------------ 492
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
L G P V Y +LI K EAL + M C+ D Y
Sbjct: 493 --------LLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITY 544
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+I + +A+ F EAG PT +Y +I A R+
Sbjct: 545 GTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARV 592
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 42/106 (39%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
++L+ +G P VV Y TL+H K EAL + + D+ Y +I
Sbjct: 105 QALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALING 164
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
F + + A R ++ P Y ++ +GR+ + R
Sbjct: 165 FCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEAR 210
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 4/189 (2%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
A GF K L A ++L + D Y L+ L KN M ++D+
Sbjct: 160 ALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFS 219
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
+ + S T I + L++ L +G P +V Y LIH E+
Sbjct: 220 PNVITYS----TLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVS 275
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EAL + ++ ++P Y ++I + + ++ A FS L + G P Y I
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 335
Query: 448 RIFMASGRL 456
+GR+
Sbjct: 336 DGLCKAGRV 344
>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
Length = 596
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 61/316 (19%), Positives = 116/316 (36%), Gaps = 26/316 (8%)
Query: 181 KDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE 240
+++ VLD+C L + + H P A + FCWA ++ + R + +
Sbjct: 175 RNMEAVLDECNVDLSHALVVGVLERFKHARKP--AFRFFCWAGQKAGFTHNSRTYNAMMS 232
Query: 241 VLARHHEL------------KVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288
VL R + K +E F K V L +
Sbjct: 233 VLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAG 292
Query: 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
+LD AKL E L ++L R NL + T ++ R+
Sbjct: 293 VDTINCLLDNLGRAKLGKE----------AQALFEKLEDRFTPNL--RTYTVLLNGWCRI 340
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
+ ++ G P ++ + T++ L KK +A+ + M+A ++ Y
Sbjct: 341 KNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTY 400
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
++I+ + A+ YF ++ ++G P +Y +I F ++ K + KE +
Sbjct: 401 TILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKE 460
Query: 469 AGFKLDKQTVVELLQI 484
G D +T L+++
Sbjct: 461 KGCPADGRTYNALIKL 476
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH G+ P +V Y+ L+ S EA+ ++ +EASN D+ Y ++I
Sbjct: 392 ALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 451
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
++ A FS L G P+ Y MI G L + + E +
Sbjct: 452 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 503
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 272 GFVKGGNLKLAWKLL--MVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD 329
G G L+ A L MVA+ G+M D Y+ L+ L KN M LL + +
Sbjct: 380 GLCHVGRLQDAIALFHEMVAR--GQMPDLVTYSILLDSLCKNC-HLEEAMALLKAI-EAS 435
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+LN Q I+ R + LF + G P+V Y +IH EA
Sbjct: 436 NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEA 495
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
+ M+ ++C D Y + + F+ N+ RAI+ ++ GF
Sbjct: 496 NKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 542
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 39/99 (39%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G LF G P VV Y TLI+ A+ ++ +ME NC D+ Y
Sbjct: 141 KIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYT 200
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+I ++ A FS++ G P Y ++
Sbjct: 201 SIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVH 239
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 2/180 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
G K GN A +LL + G D IY +I L K+ +GQ
Sbjct: 169 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS 228
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
++ T+++ L ++ V +L + +S P VV+++T++ + E K EA
Sbjct: 229 PDIFTY--TSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAH 286
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+V M D+ Y ++ +++ A++ F + GF P Y +I +
Sbjct: 287 EIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGY 346
>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
macrophylla]
Length = 381
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 3 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 60
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 61 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 120
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 121 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 154
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 3 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 63 SEMKTAGVMPNTTSYSTLLTMYVENK 88
>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 692
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 7/204 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI--LELGKNPDKYMLVMTLLDELGQRD 329
+ + N+ A L AK LD ++ LI + N DK + V + LG +
Sbjct: 235 AYARTNNVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKP 294
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
++ ++ +R +K +++ +G P + Y +L+ + +A
Sbjct: 295 NV----ATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDA 350
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-PTYDIYRDMIR 448
L V M+ + Y ++ + + RA+ F ++K +G C P + +I
Sbjct: 351 LGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWTFSSLIT 410
Query: 449 IFMASGRLAKCRDVCKEAEMAGFK 472
I+ SG++++ + E +GF+
Sbjct: 411 IYSRSGKVSEVEGMLNEMIQSGFQ 434
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 59/141 (41%)
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+KV + F E LF G P + ++TL++ +A+ + M C
Sbjct: 163 LKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGLPNKAVELFEKMSGFGC 222
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
D ++ + N++ +A+ + + K + + +I+++ +G KC +
Sbjct: 223 EPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLE 282
Query: 462 VCKEAEMAGFKLDKQTVVELL 482
V +E ++ G K + T LL
Sbjct: 283 VYQEMKVLGVKPNVATYNTLL 303
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%)
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
+Y LI K EAL V M C+ L Y +I F N++ +A++ F +
Sbjct: 292 IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVM 351
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRL 456
+E GF P IY I G++
Sbjct: 352 EEKGFSPNTMIYSTFIDGLCKVGKI 376
>gi|414887459|tpg|DAA63473.1| TPA: hypothetical protein ZEAMMB73_429774 [Zea mays]
Length = 452
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P Y ++ S +++K+ A ++ M + + D +Y +V+ L + N + +++
Sbjct: 183 EPNSASYNLVLKSMVADKESYGAEKLIERMLQTGTVPDEESYNLVVGLLIRQNLVDSSLK 242
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV---CKEAE 467
Y + ++G+ P+ ++ D I+ + SGRL + CK A+
Sbjct: 243 YLDLMLKSGYTPSLTVFTDYIQACVRSGRLDTLTSIIQKCKTAD 286
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 39/99 (39%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K G LF G P VV Y TLI+ A+ ++ +ME NC D+ Y
Sbjct: 152 KIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYT 211
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+I ++ A FSK+ G P Y +I
Sbjct: 212 SIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIH 250
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 52/131 (39%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++Q+ LF P V Y TL+H + ++A+ + M A + DL
Sbjct: 359 KIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLA 418
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
YR+++ + + A+ ++ + P IY +I +G L RD+
Sbjct: 419 TYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNL 478
Query: 467 EMAGFKLDKQT 477
G + + +T
Sbjct: 479 SSKGLRPNVRT 489
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 49/128 (38%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH G+ P + Y L+ + EA+ ++ +E SN D+ Y +VI
Sbjct: 403 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGM 462
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
++ A FS L G P Y MI G L + + E + G D
Sbjct: 463 CRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDG 522
Query: 476 QTVVELLQ 483
T + Q
Sbjct: 523 CTYNTITQ 530
>gi|255570274|ref|XP_002526097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534594|gb|EEF36291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 338 CTAIMKVGIRLQKFGVVESLF-HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
C AI+ R +++ +LF ++F P VV Y LI+S E + L + ++
Sbjct: 147 CNAIIAAMYRAKRYNDAITLFKYFFEQHDIVPNVVSYNNLINSHCDEGRVDVGLEIYRHI 206
Query: 397 EASNCLFDLP-AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
A+ P YR + K + + + A+ ++ G +Y ++IR F+ G
Sbjct: 207 IANAPFSPSPVTYRHLTKGLIDVGRVEEAVDLLREMLNKGHGADSLVYNNLIRAFLELGN 266
Query: 456 LAKCRDVCKE 465
L K + E
Sbjct: 267 LDKANEFFSE 276
>gi|147799110|emb|CAN63706.1| hypothetical protein VITISV_013107 [Vitis vinifera]
Length = 390
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Query: 337 DCTAIM----KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392
DC ++ K G+ + GV F G P V YT +++ ++ +A +
Sbjct: 211 DCNNVIXFLVKEGMVMDALGV----FDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDL 266
Query: 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M + D+ AY V I N+I +R + ++E G P Y Y ++
Sbjct: 267 FDEMLVLGVVPDIHAYNVYINSLCKQNNIEEGVRMLASMRELGCKPDYVXYNMLLEGMSK 326
Query: 453 SGRLAKCRDVCKEAEMAGFKLDKQT 477
L R++ +E E+ G + + +T
Sbjct: 327 VRDLGGMRELAREMELEGVQWNWET 351
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V +Y LI S A+ + M++ CL ++ Y +I F + RA
Sbjct: 209 GFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERA 268
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ- 483
+ +S++ EAG P Y +I+ + G L + E G ++ T + L+
Sbjct: 269 MVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDA 328
Query: 484 IEKESRI 490
+ K RI
Sbjct: 329 LCKHGRI 335
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L+ +G P VV YTTLI + SE A ++ +MEA + V+I
Sbjct: 271 LYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALC 330
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
I A ++ L + G IY MI SG+ ++ ++ GF D
Sbjct: 331 KHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAH 390
Query: 477 TVVELL 482
L+
Sbjct: 391 MYSSLI 396
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 30/282 (10%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV-----SLASKGVL 266
P+ AL W + P AS + +L + + V FK+ + S+A +
Sbjct: 103 PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVADTLFV 162
Query: 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326
+ K + +L +KL++ Y L+ L + L+DE+
Sbjct: 163 LDLCRKMNKDESFELKYKLII-----------GCYNTLLNSLAR--------FGLVDEMK 203
Query: 327 QRDDLNLSQQDCTAIMKVGIRLQ---KFGVVESLFHWFT---HSGRDPTVVMYTTLIHSR 380
Q L + C I + K G VE + + +G DP YT+LI
Sbjct: 204 QVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGY 263
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
K A V M C + AY +I I A+ F K+K+ PT
Sbjct: 264 CQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTV 323
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
Y +I+ S R ++ ++ KE E G K + T L+
Sbjct: 324 RTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLI 365
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 16/206 (7%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G + + + Y +I+E G +PD + +L+ QR DL+ + + + G R +
Sbjct: 232 GNVEEANQYVSMIVEAGLDPD-FFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVA 290
Query: 353 V------------VESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNME 397
++ F D PTV YT LI + ++ EAL +V ME
Sbjct: 291 YTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEME 350
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
++ Y V+I + + +A ++ E G P Y +I + G +
Sbjct: 351 EKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQ 483
DV + E + + +T EL++
Sbjct: 411 DALDVVELMESRNLRPNTRTYNELIK 436
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 1/132 (0%)
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
R+ +L CT +++ R +F V LF G P VV YT + +
Sbjct: 209 REGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVK 268
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDM 446
+A V+ M ++ + +I + RA R F KL K + + P Y M
Sbjct: 269 QAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVM 328
Query: 447 IRIFMASGRLAK 458
I + G+LA+
Sbjct: 329 IGGYCKEGKLAR 340
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 76/207 (36%), Gaps = 19/207 (9%)
Query: 293 GRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR---- 347
GR D P ++ +++ E+G NP + +D L +R + + ++ G++
Sbjct: 230 GRFRDVPGLFGRMV-EMG-NPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVY 287
Query: 348 --------LQKFGVVESLFHWF----THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
L K G E F F S P V YT +I E K A ++
Sbjct: 288 THTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGR 347
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
M + Y +I RA +K+K GF P Y +I F G+
Sbjct: 348 MVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGK 407
Query: 456 LAKCRDVCKEAEMAGFKLDKQTVVELL 482
+ + V + A G DK T L+
Sbjct: 408 IQQAYKVLRMATSQGLCPDKVTYTMLI 434
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 18/176 (10%)
Query: 244 RHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAK 303
R EL KLE F L + A GF K G ++ A+K+L +A G D Y
Sbjct: 375 RAFELMNKMKLEGF--LPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTM 432
Query: 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC-------TAIMKVGIRLQKFGVVES 356
LI E K + LD Q +++ C T I+ + + ++ +
Sbjct: 433 LITEHCKQGH----ITYALDLFNQ-----MAENSCHPDIDTYTTIIAMYCQQRQMEQSQQ 483
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
LF G PT YT++I K AL V M CL D Y +I
Sbjct: 484 LFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALI 539
>gi|223950361|gb|ACN29264.1| unknown [Zea mays]
Length = 465
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E L++ SG Y L + S + + ++ M+ D AY +I
Sbjct: 180 AEVLYNEMCESGVGADKETYLLLTEACFSVDRIDDGISYFDKMDELELKPDATAYHKLID 239
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
V + + +A YF+++KE G P+ Y +++ ++A+ RL +V K
Sbjct: 240 GLVGFSMVDKAQEYFNQMKEKGVNPSISSYETLLKAYIAADRLDDAVNVAK 290
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P V Y TL+ + EA ++ M DL +Y +I + DI A++
Sbjct: 392 PDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKV 451
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
++ GF PT Y MI+ +G+ D+ KE G D T + L++
Sbjct: 452 RDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIE 507
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 16/197 (8%)
Query: 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR------------L 348
+ K ILE G Y + L+ + ++ L+Q AI K G++
Sbjct: 123 FYKEILECGYPASLYFFNI-LMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGY 181
Query: 349 QKFGVVESLF---HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G+++ F + SG P V Y+ LI+ E K EA + M + +
Sbjct: 182 IKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNG 241
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ +I + A+ + ++ G P Y +I F G L + RD+ E
Sbjct: 242 VTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDE 301
Query: 466 AEMAGFKLDKQTVVELL 482
M G K DK T L+
Sbjct: 302 MSMKGLKPDKITYTTLI 318
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 331 LNLSQQDCTAIMKVGIRL----QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
L L Q TA IR K G LF G P VV Y TLI+
Sbjct: 131 LKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 190
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
A+ ++ +ME NC D+ Y +I ++ A FSK+ G P Y +
Sbjct: 191 NAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 250
Query: 447 IR 448
I
Sbjct: 251 IH 252
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 49/128 (38%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LFH G+ P + Y L+ + EA+ ++ +E SN D+ Y +VI
Sbjct: 404 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGM 463
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
++ A FS L G P Y MI G L + + E + G D
Sbjct: 464 CRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDG 523
Query: 476 QTVVELLQ 483
T + Q
Sbjct: 524 CTYNTITQ 531
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA+++ G +QK VE+L + G PT+V Y +IH L ++ A M A
Sbjct: 322 TALLERGF-VQK---VEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRA 377
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
L DL Y ++ + ++ A+ L+ AG PT Y +I + G L +
Sbjct: 378 MGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEE 437
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
R + +E G D T L+ + R
Sbjct: 438 ARRLKEEMVEQGCFPDVCTYTILMNGSHKVR 468
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
+DC +++V ++ V +++ +PT+V Y TL+ S L E + EA ++
Sbjct: 209 RDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKE 268
Query: 396 ME--ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
ME CL + Y VVI + A + ++ + ++ Y +I +
Sbjct: 269 METQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSF-TYNPLITALLER 327
Query: 454 GRLAKCRDVCKEAEMAGF 471
G + K + E E G
Sbjct: 328 GFVQKVEALQMEMENEGI 345
>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hermannioides]
Length = 382
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 4 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 61
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 62 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 121
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 122 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 155
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 4 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 64 SEMKTAGVMPNTTSYSTLLTMYVENK 89
>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 481
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 110/273 (40%), Gaps = 39/273 (14%)
Query: 213 ERALQTFCWAQKQPHLFPDDR-LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK 271
E ALQ F W ++ +LF DR +E+L R +L + A +L+ K
Sbjct: 26 EHALQFFRWVERS-NLFQHDRETHLKIIEILGRASKL----------NHARCILLDMPKK 74
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G L W D ++ +I GK + + + ++ELG
Sbjct: 75 G--------LEW-------------DEDLWVLMIDSYGKKGIVQESVKLFQKMEELG--- 110
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + + A+ KV +R +F + + F+ + G +PT + +I K A
Sbjct: 111 -VERTIKSYDALFKVILRRGRFMMAKRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+M++ + D+ Y +I + + + A RYF ++K PT Y +I+
Sbjct: 170 NXFFEDMKSRDITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKG 229
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+++ R+ + +E + G K + T LL
Sbjct: 230 YVSVDRVDDALSLMEEMKGFGIKPNAITYSTLL 262
>gi|224144700|ref|XP_002325381.1| predicted protein [Populus trichocarpa]
gi|222862256|gb|EEE99762.1| predicted protein [Populus trichocarpa]
Length = 1071
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%)
Query: 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVL-----EATAKGFVKGGNLKLAWKL 285
+D +AS + R ++LK E F ++A +L + VK G + A+ L
Sbjct: 664 EDETIASLISAYGRQNKLKQA--QEVFAAVADSPILGNPIINSMIDACVKCGKFEEAYLL 721
Query: 286 LMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342
G L ++ L GK+P+ ++ + +D + L +
Sbjct: 722 YEEVAQRGHNLGAVGIGMVVNALTNSGKHPEAENIIRRSI-----QDRMELDTVAYNIFI 776
Query: 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402
K + + S++ G P++ Y T+I +K +A+ V +S
Sbjct: 777 KAMLEAGRLHFATSIYEHMLLLGFTPSIQTYNTMISVYGRGRKLDKAVEVFNTACSSGVS 836
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
D AY +I + A F+K++E G P Y M +++ SG + ++
Sbjct: 837 LDEKAYMNMINYYGKAGKRHEASLLFAKMQEEGIKPGVVSYNVMAKVYAMSGLYHEVEEL 896
Query: 463 CKEAEMAGFKLDKQTVVELLQIEKES 488
K E G D T + L+Q ES
Sbjct: 897 FKVMERDGCPPDSFTYLSLVQAYSES 922
>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
brasiliensis]
Length = 382
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 4 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 61
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 62 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 121
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 122 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 155
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 4 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 64 SEMKTAGVMPNTTSYSTLLTMYVENK 89
>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R + +++ V + + F S
Sbjct: 43 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRAGITPDLVAYNSMINVFGKAKLFREARS 100
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P V Y+TL+ + +K EAL+V M CL DL ++I ++
Sbjct: 101 LISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYG 160
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L+ A + F +++ G P Y ++R++
Sbjct: 161 QLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVY 194
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
L +LG D + S T I G + Q F +E+ ++G ++ Y ++ +
Sbjct: 561 LAQQLGVADKITFS----TLINSYG-KKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAY 615
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
+ V+ ME S DL +Y ++I ++ I+ F K++E GF P
Sbjct: 616 GKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDR 675
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
Y MIR + + K D K + +G D+ T V L+
Sbjct: 676 WTYNTMIRTYGYADYPDKAVDTFKMMQDSGIMPDRVTYVMLV 717
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 43/281 (15%)
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGV------LEATAKGFVKGGNLKLAW 283
PD + ++ L R H+++ + ++S+GV +GFV+ G+++ A
Sbjct: 87 PDVVTFNTLMKALCRAHQVRTAVLM--LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 144
Query: 284 KL---------------LMVAKDG----GRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
++ + V +G GR+ D Y + + G PD+ + T ++
Sbjct: 145 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ-ITYNTFVNG 203
Query: 325 LGQRDDLNLSQQDCTAIMKVGIR------------LQKFGVVE---SLFHWFTHSGRDPT 369
L Q D + + + +++ G L K G +E + + G P
Sbjct: 204 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 263
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+ + TLI + + + EAL + + D+ + ++I + D A+R F
Sbjct: 264 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 323
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
++K +G P Y +I + G+L K D+ K+ E G
Sbjct: 324 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 364
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++ K + +F + G P V Y++LI +K+ AL V+ M ++C ++
Sbjct: 683 KVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVI 742
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I + A R S ++E G P Y MI F +G++ KC ++ ++
Sbjct: 743 IYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM 802
Query: 467 EMAG 470
G
Sbjct: 803 GAKG 806
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD 329
A+ G + A+ ++ G + D S Y+K+I L N K L +E+
Sbjct: 452 ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVI-GLLCNASKVDNAFLLFEEMKS-- 508
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKC 386
N D + K G+++ WF RD P VV YT LIH+ L +K
Sbjct: 509 --NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
A + M + C+ ++ Y +I I +A + +++++ P D+Y
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623
>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
velutina]
Length = 382
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 4 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 61
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 62 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 121
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 122 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 155
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 4 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 64 SEMKTAGVMPNTTSYSTLLTMYVENK 89
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++ K + +F + G P V Y++LI +K+ AL V+ M ++C ++
Sbjct: 683 KVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVI 742
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I + A R S ++E G P Y MI F +G++ KC ++ ++
Sbjct: 743 IYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM 802
Query: 467 EMAG 470
G
Sbjct: 803 GAKG 806
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD 329
A+ G + A+ ++ G + D S Y+K+I L N K L +E+
Sbjct: 452 ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVI-GLLCNASKVDNAFLLFEEMKS-- 508
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKC 386
N D + K G+++ WF RD P VV YT LIH+ L +K
Sbjct: 509 --NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
A + M + C+ ++ Y +I I +A + +++++ P D+Y
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623
>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 622
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 333 LSQQDC------TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
+ + DC T +M + I+ K +F G P++ YTTL+++ ++K
Sbjct: 122 MGKNDCQVVQSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYF 181
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
+ ++V +E D + ++ F +I A + K+KE+G P+ Y +
Sbjct: 182 KPIHSIVSLVEEKQMKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTL 241
Query: 447 IRIFMASGR 455
I+ + +G+
Sbjct: 242 IKGYGIAGK 250
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P VV TL+ + A+ + D Y +I F
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC 500
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
+N+ +A+ F+++ ++G P +Y +I F +GR+A V E + G + D
Sbjct: 501 NVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPD 558
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Query: 352 GVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
G V S ++F + G V YT LI++ + +A+ + M S C D Y
Sbjct: 468 GRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVY 527
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+I F ++ A ++LK+ G P Y +I F + + + ++ KE E
Sbjct: 528 YTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEE 587
Query: 469 AGFKLDKQTVVELL 482
AG K D T L+
Sbjct: 588 AGLKPDTITYNTLI 601
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFDLPAYRVVIKLFVALNDISRAI 425
+P VV+Y TLI + +E L ++ M + C D Y +I F +I +
Sbjct: 380 EPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGK 439
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
F ++ + G P ++ +GR++ + EA+ G K D T L+
Sbjct: 440 ELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALIN 497
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 51/132 (38%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
TA++ + F LF+ SG P ++Y TLI + +A V+ ++
Sbjct: 493 TALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKK 552
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
D Y +I F N R +++EAG P Y +I +G L
Sbjct: 553 LGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKF 612
Query: 459 CRDVCKEAEMAG 470
+ V ++ AG
Sbjct: 613 AQKVMRKMIKAG 624
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 35/89 (39%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P ++Y T IHS K A V+ +ME C L Y +I + N I
Sbjct: 561 PDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGL 620
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+KE G P Y +MI GR+
Sbjct: 621 LDDMKEKGITPNICTYNNMISCLCEGGRI 649
>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
pusilla]
Length = 381
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 4 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 61
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 62 LISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 121
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 122 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 155
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 4 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 64 SEMKTAGVMPNTTSYSTLLTMYVENK 89
>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Brachypodium distachyon]
Length = 501
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 121/303 (39%), Gaps = 49/303 (16%)
Query: 211 LPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL-----ENFVSLASK-- 263
P A + F WA +Q + ++V A+ E+K ++L EN +S++++
Sbjct: 155 FPRLAYKFFLWAGQQEGYHHSTGMYNLVMKVFAQCGEVKAMWRLLEEMTENGLSISARTF 214
Query: 264 ----------GVLEATAKGFVKGGNLK----------LAWKLLMVAKDGGRMLDPSIYAK 303
G+ + F+K + + LL + + L ++ K
Sbjct: 215 HLLICTCGQAGLRRRLVERFIKSSSFNYRPFRNSFNAILHTLLTIEQYS---LIEWVHQK 271
Query: 304 LILELGKNPD----------KYML-----VMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
+++E G +PD KYML LLDE+G ++ L ++ V +
Sbjct: 272 MLME-GHSPDVLTYNIVMRAKYMLGKLDQFHRLLDEMG-KNGLTPDLHTYNILLHVLGKG 329
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN-MEASNCLFDLPA 407
K +L ++ + G P+V+ +T LI LS EA ++ M C D+
Sbjct: 330 DKPLAALNLLNYMSDVGCVPSVLHFTNLIDG-LSRAGNLEACKYFFDEMMKKGCEPDVVC 388
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y V+I +VA ++ A + F + G P Y MIR G K + K+ +
Sbjct: 389 YTVMITGYVAAAELEEAQKLFDDMLVRGKLPNVYTYNTMIRGLCIVGEFDKACSMLKDMD 448
Query: 468 MAG 470
+ G
Sbjct: 449 LRG 451
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ +F + G P + Y++LI+S EK+ L V+ M ++C ++ Y +I
Sbjct: 664 QEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDG 723
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC----RDVCKEAEMAG 470
+ A R K++E G P Y MI F G++ +C RD+C +
Sbjct: 724 LCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPN 783
Query: 471 F 471
F
Sbjct: 784 F 784
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV+YT +I K EA ++ ME C ++ Y +I F + I + +
Sbjct: 712 PNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLEL 771
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + G P + YR +I ++G L
Sbjct: 772 YRDMCSKGCAPNFITYRVLINHCCSTGLL 800
>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
Length = 472
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V YT LI + + K REA ++ + + D Y ++K + L+ S AI
Sbjct: 237 PDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGV 296
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK-EAEMAGFKLDKQTVVELLQ 483
+ K+KE G P Y +I SGR+ + R AEM F D T L+
Sbjct: 297 YKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFP-DAVTYTSLMN 352
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 12/192 (6%)
Query: 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKL-----ILELGKNPDKYMLVMTLLDELGQRDD 330
G NL+ A +LL V + G D +Y + IL+ G + + V + E G D
Sbjct: 252 GKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKG---SEAIGVYKKMKEEGVEPD 308
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L + K G R+++ G P V YT+L++ E AL
Sbjct: 309 LVTYNTLIFGLSKSG-RVKE---ARKFLDIMAEMGHFPDAVTYTSLMNGLCREGNALGAL 364
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ MEA C + Y ++ L + R I + +K G Y +R
Sbjct: 365 ALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELYGVMKSGGMKLEKASYATFVRAL 424
Query: 451 MASGRLAKCRDV 462
GR+A+ +
Sbjct: 425 CKEGRVAEAYEA 436
>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
fucata]
Length = 382
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 4 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 61
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 62 LIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 121
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 122 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 155
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 4 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 64 GEMKAAGVMPNTTSYSTLLTMYVENK 89
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
H P V YTT++ + ++ EA+ ++ +M+AS D+ Y +I+ +++
Sbjct: 115 AHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASEL 174
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481
A+ ++ +G P +Y ++R + SGR V ++ G K D L
Sbjct: 175 DAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGL 234
Query: 482 L-QIEKESRIG 491
+ + KE + G
Sbjct: 235 IDDLCKEGKTG 245
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Query: 352 GVVESLFHWFTHSGRDPTV--VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
G++E F ++ + + Y+T+IH + ++ +M D Y
Sbjct: 454 GMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYS 513
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++I ++ L D+ A R ++ +GF P ++ +I+ + A G+ K + E
Sbjct: 514 MLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAK 573
Query: 470 GFKLDKQTVVELLQIEKES 488
D + + ++++ +++
Sbjct: 574 NVAFDPKIISTIIRLPQQT 592
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 351 FGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407
FG +E+ F++ G PTVV YT +I L EA + M + CL +
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCT 397
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
Y V+I+ F+ D A+R ++ GF +R
Sbjct: 398 YNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFR 434
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G +P V+ Y+T+I+ AL ++ ME C ++ AY +I
Sbjct: 32 LFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLC 91
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
++ A+ +FS++ + G P Y ++ F GR+ + + K+
Sbjct: 92 KDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQ 140
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG PT+V Y L++ + EA+ ++ ME D+ +Y +I F ++ R
Sbjct: 407 SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDR 466
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
A + +++ E G P Y +I+ RL + D+ +E
Sbjct: 467 AFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQE 508
>gi|388496610|gb|AFK36371.1| unknown [Lotus japonicus]
Length = 372
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 348 LQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G+V+ LF G P +V+YT ++ K +A + M+++ +
Sbjct: 211 LCKDGLVQEALKLFGLMREKGTIPEIVIYTAVVEGYTKAHKADDAKRIFRKMQSNGISPN 270
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+Y V+++ + + A + ++ EAG P + D++ F+ +A+ + +
Sbjct: 271 AFSYTVLVQGLCKCSRLQDAFEFCVEMLEAGHSPNMTTFVDLVDGFVKEQGVAEAKGAIR 330
Query: 465 EAEMAGFKLDKQTVVELLQIEK 486
GF ++++ V L ++K
Sbjct: 331 TLIEKGFVVNEKAVKGFLDMKK 352
>gi|115457858|ref|NP_001052529.1| Os04g0350000 [Oryza sativa Japonica Group]
gi|113564100|dbj|BAF14443.1| Os04g0350000, partial [Oryza sativa Japonica Group]
Length = 263
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
A+ KVG R + + LF + G PT++ Y +I + + E+ +A + +ME S
Sbjct: 127 AMFKVGRRQE----AKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 182
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+C D +I++ + ++++A Y SK+ + G P +I +F +G+
Sbjct: 183 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGK 238
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
H G P V YTTL+ K A+ V M A C ++ + +IK+ +
Sbjct: 362 HKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFA 421
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
++ F +K P + ++ +F +G ++ + KE + AGF ++ T L
Sbjct: 422 EMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTL- 480
Query: 483 QIEKESRIGTI 493
I SR G+
Sbjct: 481 -ISAYSRCGSF 490
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 6/189 (3%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDEL 325
A G V+ G +K AWK+ + G + +Y+ +I K+ D + V +
Sbjct: 318 AVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVAS 377
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
R ++ L + G K E LF HS P ++ Y ++I
Sbjct: 378 PVRPNVVLYSAMIGGLANFG----KMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGD 433
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
AL+V M + C+ + +Y ++I + + A+ + + + G P Y
Sbjct: 434 TSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTS 493
Query: 446 MIRIFMASG 454
MI+ SG
Sbjct: 494 MIKGLCVSG 502
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 15/185 (8%)
Query: 287 MVAKDGGRMLDPS--IYAKLILELGKNPDK--YMLVMTLLDELGQRDDLNLSQQDCTA-- 340
+V +D GR LD + I ++I PDK Y V++ L + G+ DD + A
Sbjct: 180 LVPRDPGRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADG 239
Query: 341 ---------IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+++ +R LF + G PT Y L+H L + A+
Sbjct: 240 VVAAEAFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMG 299
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
V+ ME + + Y V+ V + A + +++ G +Y +I F
Sbjct: 300 VMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFC 359
Query: 452 ASGRL 456
SG +
Sbjct: 360 KSGEI 364
>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
Length = 871
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 365 GRD--PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
G+D P V+Y T IH K A+ V+ +ME C Y ++I F ++
Sbjct: 547 GKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSD 606
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
++ S++K G CP Y +I+ F G + K
Sbjct: 607 EILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNK 642
>gi|413946102|gb|AFW78751.1| hypothetical protein ZEAMMB73_641405 [Zea mays]
Length = 666
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E L++ SG Y L + S + + ++ M+ D AY +I
Sbjct: 381 AEVLYNEMCESGVGADKETYLLLTEACFSVDRIDDGISYFDKMDELELKPDATAYHKLID 440
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
V + + +A YF+++KE G P+ Y +++ ++A+ RL +V K
Sbjct: 441 GLVGFSMVDKAQEYFNQMKEKGVNPSISSYETLLKAYIAADRLDDAVNVAK 491
>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 517
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 48/244 (19%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA- 270
P+R +F + +P F D ++ +E R K +KL F + KG++
Sbjct: 306 PDRCY-SFMLKEMEPRGFCDVVSYSTLIETFCRASNTKKAYKL--FEEMRQKGIVTNVVT 362
Query: 271 -----KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL 325
K F++ GN +A KLL + ELG +PD+ + T+LD L
Sbjct: 363 FTSLIKAFLREGNSSVAKKLL----------------DQMTELGLSPDR-IFYTTILDHL 405
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF-HWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ +++ + +G+ + H T P + Y +LI
Sbjct: 406 CKSGNVD----------------KAYGIFNDMIEHEIT-----PDAISYNSLISGLCRSG 444
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ EA+ + +M+ C D ++ +I + +S A + + ++ + GF D+
Sbjct: 445 RVTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKVWDQMMDKGFTLDRDVSD 504
Query: 445 DMIR 448
+I+
Sbjct: 505 TLIK 508
>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
[Burroughsia fastigiata]
Length = 348
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 43 SLISEMKTAGVTPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 102
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 103 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLVRVY 137
>gi|255661058|gb|ACU25698.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 429
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V LF FT+ G DP Y +++ S + +EA +V+ +M + D+ Y
Sbjct: 279 KLSVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYN 338
Query: 410 VVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL KE G+ +Y +I +GR+ + + ++ +
Sbjct: 339 VIIQGLGKMGRADLANAVLEKLMKEGGYLDIV-MYNTLINALGKAGRIDEANKLFEQMKA 397
Query: 469 AGFKLDKQTVVELLQIEKES 488
+G D T L+++ ++
Sbjct: 398 SGINPDVVTYNTLIEVHSKA 417
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF+ G +P V+ Y T+I+ A+ V ME + C D+ Y +I
Sbjct: 180 LFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLC 239
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ A+ + S++ + G P Y M+ F G+L + + K EM G +
Sbjct: 240 KDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFK--EMVGRDVMPD 297
Query: 477 TVVELLQIEKESRIGTI 493
TV + ++ + G +
Sbjct: 298 TVTLTILVDGLCKEGMV 314
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 98/267 (36%), Gaps = 28/267 (10%)
Query: 225 QPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGGN 278
Q + P+ + ++ L +H EL +L + + KG + + G K GN
Sbjct: 461 QMGMTPNIVTYGALIDGLCKHGELDTANELLD--EMRKKGLQLNVCIYNSMVNGICKAGN 518
Query: 279 LKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQ 335
++ A KL+ + G D Y +I LG + L+ +LD Q
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ-------- 570
Query: 336 QDCTAIMKVGIRLQKF---GVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
++ + + F G++E L W G P + Y TL+
Sbjct: 571 ---PTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTT 627
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ M D Y ++IK ++ A + ++ E G+ PT Y +I+
Sbjct: 628 TKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKR 687
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQ 476
F ++ + R++ +E G D +
Sbjct: 688 FYKKKKILEARELFEEMRGHGLVADGE 714
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 8/152 (5%)
Query: 348 LQKFG----VVE--SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+Q FG V+E +LFH G P V YTTLI + A ++ M
Sbjct: 405 IQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGM 464
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++ Y +I ++ A ++++ G IY M+ +G + +
Sbjct: 465 TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIK 524
Query: 462 VCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
+ KE E+AG +D + I+ R+G I
Sbjct: 525 LMKEMEVAG--IDPDAITYTTVIDAYCRLGDI 554
>gi|297842513|ref|XP_002889138.1| hypothetical protein ARALYDRAFT_476899 [Arabidopsis lyrata subsp.
lyrata]
gi|297334979|gb|EFH65397.1| hypothetical protein ARALYDRAFT_476899 [Arabidopsis lyrata subsp.
lyrata]
Length = 382
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF + SG P V MYT LI S S EA ++ +M + + + Y +IK F
Sbjct: 221 NLFKQMSESGIKPDVYMYTVLIQSFCSGDTLDEASGLLDHMFENGLMPNFITYNALIKGF 280
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
N + +A+ SK+ E P Y +I +SG + +C +KL K
Sbjct: 281 CKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGGITVSEKICNGLLRCYYKLQK 339
>gi|255661066|gb|ACU25702.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 429
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V LF FT+ G DP Y +++ S + +EA +V+ +M + D+ Y
Sbjct: 279 KLSVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYN 338
Query: 410 VVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL KE G+ +Y +I +GR+ + + ++ +
Sbjct: 339 VIIQGLGKMGRADLANAVLEKLMKEGGYLDIV-MYNTLINALGKAGRIDEANKLFEQMKA 397
Query: 469 AGFKLDKQTVVELLQIEKES 488
+G D T L+++ ++
Sbjct: 398 SGINPDVVTYNTLIEVHSKA 417
>gi|226496595|ref|NP_001146253.1| uncharacterized protein LOC100279827 [Zea mays]
gi|219886401|gb|ACL53575.1| unknown [Zea mays]
Length = 666
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E L++ SG Y L + S + + ++ M+ D AY +I
Sbjct: 381 AEVLYNEMCESGVGADKETYLLLTEACFSVDRIDDGISYFDKMDELELKPDATAYHKLID 440
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
V + + +A YF+++KE G P+ Y +++ ++A+ RL +V K
Sbjct: 441 GLVGFSMVDKAQEYFNQMKEKGVNPSISSYETLLKAYIAADRLDDAVNVAK 491
>gi|414586026|tpg|DAA36597.1| TPA: hypothetical protein ZEAMMB73_327514 [Zea mays]
Length = 549
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 1/141 (0%)
Query: 338 CTAIMKV-GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396
CT ++ V RL F + W T +G VV Y+TLI S + EAL V+ M
Sbjct: 136 CTVLVGVYACRLHWFDAAYEVVRWMTANGVALDVVTYSTLISGLCSAGRVAEALGVLDLM 195
Query: 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
C + Y ++ + I A + AGF P+ Y ++ +
Sbjct: 196 LEEGCQPNAHTYTPILHAYCTSGMIHEAKELLETMIAAGFAPSTATYNVLVEALCKACAF 255
Query: 457 AKCRDVCKEAEMAGFKLDKQT 477
+ + +E+ G+ D T
Sbjct: 256 NEVDALLEESSAKGWTPDTIT 276
>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 628
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 53/257 (20%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFV 274
A + FCWA ++ D R S + +LA+ + E VS+ + E KG +
Sbjct: 187 AFRFFCWAAEKQGFAHDSRTYNSMMSILAKTRQF------ETMVSV----LEEMGTKGLL 236
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT---LLDELGQRDDL 331
+A K AK+ + + I EL K + V T LLD LG+
Sbjct: 237 TMETFTIAMKAFAAAKERKKAVG-------IFELMKKYKFKIGVETINCLLDSLGR---- 285
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
K+G Q + + L FT P ++ YT L++ + EA
Sbjct: 286 ----------AKLGKEAQV--LFDKLKERFT-----PNMMTYTVLLNGWCRVRNLIEAAR 328
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ +M D+ A+ V+++ + S AI+ F +K G CP Y MI
Sbjct: 329 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMI---- 384
Query: 452 ASGRLAKCRDVCKEAEM 468
RD CK++ M
Sbjct: 385 --------RDFCKQSSM 393
>gi|255661056|gb|ACU25697.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 429
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V LF FT+ G DP Y +++ S + +EA +V+ +M + D+ Y
Sbjct: 279 KLSVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYN 338
Query: 410 VVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL KE G+ +Y +I +GR+ + + ++ +
Sbjct: 339 VIIQGLGKMGRADLANAVLEKLMKEGGYLDIV-MYNTLINALGKAGRIDEANKLFEQMKA 397
Query: 469 AGFKLDKQTVVELLQIEKES 488
+G D T L+++ ++
Sbjct: 398 SGINPDVVTYNTLIEVHSKA 417
>gi|297843920|ref|XP_002889841.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
gi|297335683|gb|EFH66100.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
Length = 665
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
H+G VMY T++ S +C EA + M+A ++ Y ++ + D
Sbjct: 231 HNGIQMDSVMYGTVLAICASNGRCEEAENFIQQMKAEGHSPNIYHYSSLLNSYSWKGDYK 290
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+A +++K G P + ++++++ G + R++ E E AG+
Sbjct: 291 KADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGY 339
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 56/300 (18%), Positives = 115/300 (38%), Gaps = 14/300 (4%)
Query: 182 DVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEV 241
D L + R L+ L+ +R+ G + +Q F W Q+ ++ ST
Sbjct: 85 DFLSSLHRLERVLKVQDLNVILRDFGISGRWQDLIQLFDWMQQH------GKISVSTYSS 138
Query: 242 LARHHELK-VPFKLENFVSLASKG------VLEATAKGFVKGGNLKLAWKLLMVAKDGGR 294
+ K V LE + S+ + + + VK G L KL K GG
Sbjct: 139 CIKFVGAKNVSKALEIYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRGGL 198
Query: 295 MLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354
D Y L+ K + Y + L+ EL + + + ++ + +
Sbjct: 199 KPDVITYNTLLAGCIKVKNGYPKAVELIGEL-PHNGIQMDSVMYGTVLAICASNGRCEEA 257
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
E+ G P + Y++L++S + ++A ++ M++ + + ++K+
Sbjct: 258 ENFIQQMKAEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKV 317
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
++ R+ S+L+ AG+ Y ++ +G+L + R + + + G K D
Sbjct: 318 YIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVKSD 377
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++ K + +F + G P V Y++LI +K+ AL V+ M ++C ++
Sbjct: 683 KVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVI 742
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I + A R S ++E G P Y MI F +G++ KC ++ ++
Sbjct: 743 IYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM 802
Query: 467 EMAG 470
G
Sbjct: 803 GAKG 806
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD 329
A+ G + A+ ++ G + D S Y+K+I L N K L +E+
Sbjct: 452 ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVI-GLLCNASKVDNAFLLFEEMKS-- 508
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKC 386
N D + K G+++ WF RD P VV YT LIH+ L +K
Sbjct: 509 --NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
A + M + C+ ++ Y +I I +A + +++++ P D+Y
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V+ +TTLI + ++KK EA+ V + M++ C D Y +I F IS+
Sbjct: 327 EPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYE 386
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ + G P Y ++ L +C ++ +E G
Sbjct: 387 LLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG 430
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 355 ESLFHW--FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
ESL+ + G P VV+ T LIH + K +A+ V+ +E ++ DL AY +I
Sbjct: 75 ESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILE-NHGHPDLIAYNAII 133
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
F N I A + ++K GF P Y +I + G L
Sbjct: 134 TGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGML 177
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 8/195 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN--PDKYMLVMTLLDELGQRD 329
K G + LA ++L V G + D Y ++ L K D+ + + L E+G
Sbjct: 345 ALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSP 404
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + +A+ G +++ G++ + G DP + Y +LI + EA
Sbjct: 405 NASSYNSMFSALWSTGHKVRALGMILEMLD----KGVDPDGITYNSLISCLCRDGMVDEA 460
Query: 390 --LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
L V ME+S C + +Y +V+ ++ +S AI + + + G P Y +I
Sbjct: 461 IELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLI 520
Query: 448 RIFMASGRLAKCRDV 462
G L RD+
Sbjct: 521 EGIGFGGCLNDARDL 535
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PTVV YT LI + L + EA+ ++ M N D+ Y +I+ + RA +
Sbjct: 194 PTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQI 253
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGR 455
S + G+ P Y ++R + G+
Sbjct: 254 ISSISSKGYAPDVITYNILLRGLLNQGK 281
>gi|294874000|ref|XP_002766813.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239868036|gb|EEQ99530.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 466
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 40/254 (15%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARH----------HELKVPFKLENFVSLA 261
PE AL+T A + + PD + + VL ++ HEL+ P E V +A
Sbjct: 11 PESALKTLREATES--VVPDLVTCNTVLSVLVKNGELEVAERILHELRKPIGEEGKV-VA 67
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
KG+ + GNL L+ + ++ + ++ ++ P Y + L
Sbjct: 68 DVVTHNTVMKGYARLGNLSKCDYLMTLMQNEDVAASIAFVKEMFAQIKPTPVTYGI---L 124
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP--------TVVMY 373
LD DD+ +Q+ V E + + +G D VMY
Sbjct: 125 LDCCINADDMARAQR----------------VFEEIRQQQSFAGNDEGNRKSFSVNTVMY 168
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
TTLI + A++V M++ DL + ++IK + ISR + ++ +
Sbjct: 169 TTLIKGHAKQGNVDAAMSVYEEMKSCGVAADLITFSILIKSNCSAGRISRGLGLLKEMLD 228
Query: 434 AGFCPTYDIYRDMI 447
A P +Y +++
Sbjct: 229 AHHRPDEIVYNNLL 242
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 27/270 (10%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA-----T 269
AL F WA+KQ + +E L + + K+ + L N + SKG+L
Sbjct: 128 ALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVN--DMRSKGLLTQETFALI 185
Query: 270 AKGFVKGGNLKLA---------WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT 320
++ + + +K A + L V D R+LD L ++ ++ V
Sbjct: 186 SRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDA-------LCKSRHVERAQEVFD 238
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
+ + R D+ + T +++ + Q ++ ++ G +P V Y LI++
Sbjct: 239 KMKDRKFRPDI----KSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAH 294
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
++ A+ + MEA+ C+ Y +I + ++ A+++F + K +GF P
Sbjct: 295 CKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEA 354
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
Y ++ + S R+ + E G
Sbjct: 355 PTYNAVVGSYCQSMRMDDAYRIVDEMRKCG 384
>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
Length = 762
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + + ++FG + L PTVV Y +IH+ REA+ V M+
Sbjct: 370 TTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQK 429
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D Y +I + + A+ +++++E G P Y M+ G LA
Sbjct: 430 AGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLA 488
>gi|414887458|tpg|DAA63472.1| TPA: hypothetical protein ZEAMMB73_429774 [Zea mays]
Length = 618
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P Y ++ S +++K+ A ++ M + + D +Y +V+ L + N + +++
Sbjct: 183 EPNSASYNLVLKSMVADKESYGAEKLIERMLQTGTVPDEESYNLVVGLLIRQNLVDSSLK 242
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV---CKEAE 467
Y + ++G+ P+ ++ D I+ + SGRL + CK A+
Sbjct: 243 YLDLMLKSGYTPSLTVFTDYIQACVRSGRLDTLTSIIQKCKTAD 286
>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 1039
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 8/186 (4%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRDD 330
+ KGG L A ++ A++ G +D +Y ++ GK + L+ + E G R
Sbjct: 791 YGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPG 850
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
A G+ F +S+F G P Y LI + K EA
Sbjct: 851 KISFNSMINAYATSGL----FSEAKSVFQEMQDCGHAPDSFSYLALIRAYTEAKLYTEAE 906
Query: 391 TVVWNM--EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ M +SN P + +I F+ + A R + ++ E G P R M+R
Sbjct: 907 EAIRTMTLSSSNTTPSCPHFSHLILAFLKEGRVGEARRIYGQMMEVGVAPDLACCRAMMR 966
Query: 449 IFMASG 454
+++ G
Sbjct: 967 VYVDRG 972
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+ LI + K +AL + M+ ++ L D +A+
Sbjct: 311 PEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNEDYPKALAL 370
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
FS ++ + P IY +IRI+ G + R E E AG D+QT V + Q+
Sbjct: 371 FSDMESSKVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYVAMAQV 427
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF GR P VV Y+ LI K +A ++ MEA C+ ++ Y +I
Sbjct: 347 TLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGL 406
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
L + A+ F + E G P Y +I
Sbjct: 407 CGLEKVDEALELFVAMVEKGCVPDTITYGTII 438
>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g62470, mitochondrial; Flags: Precursor
gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 53/257 (20%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFV 274
A + FCWA ++ D R S + +LA+ + E VS+ + E KG +
Sbjct: 178 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF------ETMVSV----LEEMGTKGLL 227
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT---LLDELGQRDDL 331
+A K AK+ + + I EL K + V T LLD LG+
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVG-------IFELMKKYKFKIGVETINCLLDSLGR---- 276
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
K+G Q + + L FT P ++ YT L++ + EA
Sbjct: 277 ----------AKLGKEAQV--LFDKLKERFT-----PNMMTYTVLLNGWCRVRNLIEAAR 319
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ +M D+ A+ V+++ + S AI+ F +K G CP Y MI
Sbjct: 320 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMI---- 375
Query: 452 ASGRLAKCRDVCKEAEM 468
RD CK++ M
Sbjct: 376 --------RDFCKQSSM 384
>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 426
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V YTTL+ + KK EAL+V M CL DL ++I ++ L A
Sbjct: 109 GVMPDTVSYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEA 168
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ F +++ G P Y ++R++
Sbjct: 169 DKLFWSMRKLGVEPNVVSYNTLLRVY 194
>gi|255661064|gb|ACU25701.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 429
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V LF FT+ G DP Y +++ S + +EA +V+ +M + D+ Y
Sbjct: 279 KLSVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYN 338
Query: 410 VVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL KE G+ +Y +I +GR+ + + ++ +
Sbjct: 339 VIIQGLGKMGRADLANAVLEKLMKEGGYLDIV-MYNTLINALGKAGRIDEANKLFEQMKA 397
Query: 469 AGFKLDKQTVVELLQIEKES 488
+G D T L+++ ++
Sbjct: 398 SGINPDVVTYNTLIEVHSKA 417
>gi|361070031|gb|AEW09327.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139485|gb|AFG50982.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139486|gb|AFG50983.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139487|gb|AFG50984.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139488|gb|AFG50985.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139490|gb|AFG50987.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139491|gb|AFG50988.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139492|gb|AFG50989.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139493|gb|AFG50990.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
Length = 164
Score = 44.7 bits (104), Expect = 0.097, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+LQK F G +YT LI ++KK +A ++ M+ D
Sbjct: 6 KLQKMEEASKFFAEMQEHGSPLDAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRHDCR 65
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
Y +IK+ + L+ A + F ++ + GF PT Y M++++
Sbjct: 66 TYNALIKVMMILHKPDEATKLFEEMSQCGFQPTIHTYNMMMKLY 109
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F T G P +V Y TL+H SE + + + +M+++ D + ++I +
Sbjct: 392 IFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYA 451
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ A+ F+++++ G P Y +I F GRL
Sbjct: 452 KRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRL 491
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%)
Query: 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410
F + LF+ +G ++ LIH+ +A+ + M+ D+ Y
Sbjct: 421 FADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYST 480
Query: 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
VI F + ++ A+ F+++ G P +Y +I+ F G L K +++ E
Sbjct: 481 VISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSE 535
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 8/161 (4%)
Query: 339 TAIMKVGIRLQ-KFGVVESLFHWFTHSGRD----PTVVMYTTLIHSRLSEKKCREALTVV 393
T I + I+ K G +ES F + P ++ Y+TL+ + +EA+ +
Sbjct: 190 TCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELF 249
Query: 394 WNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
M + + + D Y V+I F + RA + +K G P Y ++ F
Sbjct: 250 EEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCK 309
Query: 453 SGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
GRL + D +E ++ G K D TV + I R G I
Sbjct: 310 EGRLEEAMDAFEEMKIFGLKQD--TVGYTILINYFCRFGRI 348
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 16/204 (7%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR----- 347
GR+ + + + +L+ G P+ L L++ G++ D+ + + ++K GIR
Sbjct: 907 GRLEEAKQFFEEMLDYGCMPN-CPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKS 965
Query: 348 -------LQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
L G V+ H+F SG DP +V Y +I+ ++ EAL++ M
Sbjct: 966 YSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR 1025
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
DL Y +I + A + + +L+ G P Y +IR SG
Sbjct: 1026 NRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPD 1085
Query: 458 KCRDVCKEAEMAGFKLDKQTVVEL 481
+ V K+ + G + + T +L
Sbjct: 1086 RAYAVYKKMMVGGCRPNTGTFAQL 1109
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 102/272 (37%), Gaps = 25/272 (9%)
Query: 231 DDRLLASTVEVLARHHE----LKVPFKL-ENFVSLASKGVLEATAKGFVKGGNLKLAWKL 285
DD +L V+ L +H + V KL ++F S + G +K ++AW L
Sbjct: 751 DDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGL 810
Query: 286 LMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345
K+ G D Y + LGK+ K + L +E+ R + T +
Sbjct: 811 FYKMKNAGCTPDVFTYNLFLDALGKS-GKIKELFDLYEEMLFR-----GCKPNTITHNIV 864
Query: 346 IRLQKFGVVES--------LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
I FG+V+S L++ PT Y LI L + EA M
Sbjct: 865 I----FGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEML 920
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
C+ + P Y +++ F D+ A F ++ + G P Y M+ G++
Sbjct: 921 DYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVD 980
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
+E +++G LD V L I R
Sbjct: 981 DALHYFEELKLSG--LDPDLVCYNLMINGLGR 1010
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 48/118 (40%)
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
+D V+ Y+ I+ + + EA+ + ME D Y ++I + +
Sbjct: 87 QDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGV 146
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+++ GF PT Y +I F +GR+ D+ E E G + T L+Q
Sbjct: 147 SLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQ 204
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SL G PTVV YTTLIH + + A+ ++ ME + Y +I+
Sbjct: 147 SLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGL 206
Query: 416 VALNDISRAIRYFSKLKEAG--FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ RAI ++K G CP Y +I G + E ++G
Sbjct: 207 CDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFP 266
Query: 474 DKQTVVELLQ 483
+ T L+
Sbjct: 267 NNATYTALIH 276
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 5/193 (2%)
Query: 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLD 323
GVL G K G L A +L A++G LD Y+ +I L + + V +LD
Sbjct: 398 GVL---VHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE-GRLDEVAGVLD 453
Query: 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383
++ + + C A++ +R K F G PTVV Y TLI+
Sbjct: 454 QM-TKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 512
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
++ EA +V M ++ Y +++ + A+ + + E GF P ++
Sbjct: 513 ERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMH 572
Query: 444 RDMIRIFMASGRL 456
+I +SG++
Sbjct: 573 NIIIHGLCSSGKV 585
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 1/122 (0%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q ++K+ R ++F + L +W G P V Y TLI+S +AL +
Sbjct: 150 QTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE 209
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK-LKEAGFCPTYDIYRDMIRIFMASG 454
M D+ Y ++I F DI A + + LK P Y MI G
Sbjct: 210 MPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCG 269
Query: 455 RL 456
+
Sbjct: 270 KF 271
>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 20/222 (9%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V GF + G+ A K L + G LD + Y +I L N K ++++
Sbjct: 270 VYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNG-KLKEATEIVED 328
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ ++ DL T +M + + +++H G +P VV +T+I
Sbjct: 329 M-EKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNG 387
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ EA+ V + +E +N + Y V+I D R FSK+ EAG P +Y
Sbjct: 388 QLHEAI-VYFCIEKANDVM----YTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYT 442
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQIE 485
I +CK+ + FKL + V E L ++
Sbjct: 443 SWI------------AGLCKQGNLVDAFKLKTRMVQEGLLLD 472
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 313 DKYMLVMTLLD-ELGQRDDLNLSQQDC------TAIMKVGIRLQKFGVVESLFHWFTHSG 365
++ LV T +D ++ R L L C T +M + + K + +F+ G
Sbjct: 28 NQVKLVSTPVDSQIQSRCLLCLGNNSCGTVRSRTKLMNILVERGKPQEAQFIFNSLVEQG 87
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
PT V YT L+ + +K+ + ++ ME + D +I F ++ A+
Sbjct: 88 HRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAM 147
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIF 450
F K++E+G PT + +I+ +
Sbjct: 148 EIFQKMEESGCKPTTSTFNTLIKGY 172
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
+ +F + G P Y+ LI S E++ +EAL ++ ME+S C + Y +I
Sbjct: 386 IAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLI 445
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
I A F +++ G + Y +I + R+ + + + M G K
Sbjct: 446 DGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLK 505
Query: 473 LDKQTVVELL 482
DK T LL
Sbjct: 506 PDKFTYNSLL 515
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+ + G P + +TTL+ + E AL + M CL + +V++ F
Sbjct: 180 MLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFC 239
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ A+R+ ++ E GF P + ++ F G + D+ GF D
Sbjct: 240 KEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVY 299
Query: 477 TVVELL 482
T L+
Sbjct: 300 TYNSLI 305
>gi|357116934|ref|XP_003560231.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Brachypodium distachyon]
Length = 922
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 2/140 (1%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E +FH+ G +V Y ++ + K+ +++ NM+ S D Y +I+
Sbjct: 465 AEHVFHYARGVGGKRDIVEYNVMVKAYGLAKRYDRVTSLLENMKESGISPDECTYNSLIQ 524
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
+F A RA + K+KE G P+ + Y +IR + S ++ D+ EM +
Sbjct: 525 MFSAGGFPQRANKLLRKMKETGLKPSCETYSAIIRTYSHSFLASEAIDLYN--EMKASDV 582
Query: 474 DKQTVVELLQIEKESRIGTI 493
+ VV L I+ + G +
Sbjct: 583 EPNVVVYGLLIDMFAETGQV 602
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 47/103 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P + + T+I+ + A ++ NM D+ Y V++ +F ++ D+ ++Y
Sbjct: 305 PDIYTFNTMINVFGLHGRMEVAEALLANMVIRGVTPDIKTYNVMMTVFASMGDVEGVLKY 364
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ ++ G C YR ++++ + + DV +E +G
Sbjct: 365 YHQIGRTGLCADVVSYRVVLQVLCERKMVREAEDVIEEIMQSG 407
>gi|326513966|dbj|BAJ92133.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 350 KFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+FG V+ L H++ G P V + LI + + EAL V M
Sbjct: 258 RFGRVDKLQHFWAMMLEDGLVPDDVSHCHLIEALGRAGQAEEALRVFEKMVQEGYGPTTM 317
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
AY ++ F+++ D+ R+I+Y+ + + P D Y MIR + + R+A
Sbjct: 318 AYNALVFNFISVGDLDRSIKYYKDMVDNNCPPNSDTYCKMIRALLKTRRVA 368
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 32/214 (14%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
GF K G L+ A LL + ++ G PD L TL+D L + +
Sbjct: 414 GFCKAGKLREAHDLL----------------EQMIRRGCRPDVACL-STLIDALCKAAAI 456
Query: 332 NLSQQ--------DC-------TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTL 376
+ +Q+ DC + ++ + ++ ES + P VV Y ++
Sbjct: 457 DSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSV 516
Query: 377 IHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
+ ++ +A + M A+ + D+ Y +VI F N++ A + ++KEA
Sbjct: 517 VDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKC 576
Query: 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
P Y +I +G + K DV +E G
Sbjct: 577 VPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCG 610
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 8/188 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
G K G + A+ LL DGG + Y L+ + GK D LV ++ E G
Sbjct: 1027 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV-EKGYV 1085
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
+L +++ + + + L G P VV Y T+I K E
Sbjct: 1086 PNLFTYN----SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHE 1141
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
+ ++ M ++NC+ D+ + +I + A F+ ++E+G P Y ++
Sbjct: 1142 GVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVH 1201
Query: 449 IFMASGRL 456
S R
Sbjct: 1202 GLCKSRRF 1209
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 51/128 (39%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P V Y T++H + AL ++ M C D+ +Y VI
Sbjct: 252 LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLC 311
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
L+ + A R K+ + G P Y ++ F G L ++ ++ G++ +
Sbjct: 312 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAI 371
Query: 477 TVVELLQI 484
T ++ +
Sbjct: 372 TYNNIMHV 379
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV Y++L+H K EA ++ M S C ++ Y +I L I A
Sbjct: 978 GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEA 1037
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
++ + G P Y ++ F G+
Sbjct: 1038 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 1068
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 7/165 (4%)
Query: 333 LSQQDCTAIM----KVGIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKK 385
+S+ CTA + V + + G V+S ++ G P +V Y T++ S +
Sbjct: 329 MSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADR 388
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
+A ++ M ++ L D + +I + I +A F ++ E G P Y
Sbjct: 389 WEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYST 448
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRI 490
+I +G++ + ++ E GF DK V + KE +I
Sbjct: 449 IIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKI 493
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 1/128 (0%)
Query: 339 TAIMKVGIRL-QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397
AI+ IR Q + E +F SG P V Y LI + L ME
Sbjct: 171 NAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEME 230
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ CL ++ Y +I + L I A + + G P Y +I G++
Sbjct: 231 RNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMK 290
Query: 458 KCRDVCKE 465
+ ++ +E
Sbjct: 291 ETSEILEE 298
>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
succulentifolia]
Length = 382
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 44 NAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 103
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 104 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 155
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + R +
Sbjct: 4 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E AG + + LL + E++
Sbjct: 64 SEMRTAGVTPNTASYSTLLTMYVENK 89
>gi|255661088|gb|ACU25713.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 429
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V LF FT+ G DP Y +++ S + + +EA +V+ M + D+ Y
Sbjct: 279 KLSVACKLFEIFTNMGVDPASYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYN 338
Query: 410 VVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL KE G+ +Y +I +GR+ + + ++ +
Sbjct: 339 VIIQGLGKMGRADLANAVLEKLMKEGGYLDIV-MYNTLINALGKAGRIDEANKLFEQMKA 397
Query: 469 AGFKLDKQTVVELLQIEKES 488
+G D T L+++ ++
Sbjct: 398 SGINPDVVTYNTLIEVHSKA 417
>gi|326489575|dbj|BAK01768.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520708|dbj|BAJ92717.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)
Query: 263 KGVLEATAKGFVKGGNLKLAWKLL--MVAKDGGRMLDPSIYAKLILELGKNP--DKYMLV 318
KG E + G + + KL M +DG P +Y+ ++ L K+ D M +
Sbjct: 253 KGTYELAVPALARAGRIDASRKLFDEMRQRDGVGPASPGVYSTMVDVLAKSGRLDAAMGM 312
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+ + R ++S ++K G K L+ G P+ +YT ++
Sbjct: 313 YREMVAVEHRVSTSVSTSMVEGLVKAG----KLDAGMELWEEMRRGGLRPSFGLYTMVLE 368
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPA-YRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ + A + +ME S F PA Y ++++ + ++ A++ + + AG
Sbjct: 369 ANARSGRLDVAAKLFGDMERSG-FFPTPATYACLVEMHASAGNVDVAMKMYHSMANAGTR 427
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
P + ++ + L V E + +GF ++ T +LL I
Sbjct: 428 PGLSTFTSLLTMLANKKLLDLAAKVLLEMKASGFPIE-VTASDLLMI 473
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEK-KCREALTVVWNMEASNCLFDLPAYRVVIKL 414
SLF+ G + TVV YT +IH L +K K AL ++ M+ S D Y ++
Sbjct: 3 SLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNG 62
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
V + A + +K+ Y ++I+ + +GRL CR + +E + G +
Sbjct: 63 LVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPN 122
Query: 475 KQTVVELLQ 483
T L+Q
Sbjct: 123 SWTYNALIQ 131
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 79/189 (41%), Gaps = 12/189 (6%)
Query: 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDE 324
+G+ + G + A K+ K G ++P++Y I+ G+ + + +LD
Sbjct: 262 VRGWCRAGEISEAEKVFKDMKLAG--IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDS 319
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ + + +M+V ++ + V +++ G +P + Y LI + ++
Sbjct: 320 GCAPNAITFNN-----LMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDE 374
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
A+ V+ M C + + + + D++ A R +SK+ EA P Y
Sbjct: 375 NLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYN 434
Query: 445 DMIRIFMAS 453
++R+F S
Sbjct: 435 ILMRMFAGS 443
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V++YT L+ + EA V +M+ + ++ Y +VI ISRA
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHD 311
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
F+ + ++G P + +++R+ + +GR K V + + G + D T L++
Sbjct: 312 VFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIE 368
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 328 RDDLNL-SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386
RDD + S ++ + ++++F + L + ++ +T LI +
Sbjct: 143 RDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLA 202
Query: 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446
EA+ ME C+ D A+ +VI S A +F LK+ F P +Y ++
Sbjct: 203 SEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNL 261
Query: 447 IRIFMASGRLAKCRDVCKEAEMAGFK 472
+R + +G +++ V K+ ++AG +
Sbjct: 262 VRGWCRAGEISEAEKVFKDMKLAGIE 287
>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
duartei]
Length = 381
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 297 DPSIYAKLILELGK---NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
D +Y+ LI EL + + K + + + L LG DL A++ V + + F
Sbjct: 3 DLVLYSNLI-ELSRKLCDYSKAISIFSRLKRLGFXPDL----VAYNAMINVFGKAKLFRE 57
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
SL +G P Y+TL+ + KK EAL+V M CL DL ++I
Sbjct: 58 ARSLIGEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMID 117
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ L A + F +++ G P Y ++R++
Sbjct: 118 VYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 154
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK GF P Y MI +F + + R +
Sbjct: 3 DLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLI 62
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 63 GEMKTAGVMPNTTSYSTLLTMYVENK 88
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 13/195 (6%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG----KNPDKYMLVMTLLDELGQR 328
F K G L LA++L + D G + P IY I+ G D ++ + E G
Sbjct: 252 FCKVGQLDLAYELFQLMTDRGCL--PDIYTYNIMISGACRANRIDDARQLLERMTEAGCP 309
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + + K + + V E L + G VV +TLI ++ +
Sbjct: 310 PDVVTYNSIVSGLCKASQVDEAYEVYEVL----RNGGYFLDVVTCSTLIDGLCKSRRLDD 365
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
A ++ ME + D+ AY ++I F + + +++ +FS++ + G PT Y +I
Sbjct: 366 AEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVID 425
Query: 449 IFMASGRLAKCRDVC 463
S R+ RD C
Sbjct: 426 KLCKSARV---RDGC 437
>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1071
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PT+ +TTL+H + EAL + M+ + D+ AY V+I A D++ A++
Sbjct: 938 PTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKL 997
Query: 428 FSKLKEAGFCPTYDIYRDMI-RIFMASGRLAKCRDVCKEAEMAG 470
+ ++K+ G P Y +I IF LAK + K+ + G
Sbjct: 998 YKEIKQRGLWPNMTTYCILIDAIFTNDISLAKGEVLLKDLQERG 1041
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 8/216 (3%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD- 329
K ++ ++L WKL + G + D Y+ I K D + + +E+ +RD
Sbjct: 216 KDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARD-FDAAKKVFEEMRRRDC 274
Query: 330 DLNLSQQDC--TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
+N + + + + G + FG E + + G P Y L++ + +
Sbjct: 275 AMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDY----GLSPDAFTYGALMNGLCKGSRLK 330
Query: 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
EA ++ M S ++ Y ++ F+ + A ++ AG P +Y ++I
Sbjct: 331 EAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLI 390
Query: 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
R G+L + + KE G + D T L+Q
Sbjct: 391 RGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQ 426
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
GF K G L AWKLL +D G+ + Y L+ L KN DK + ++ + G +
Sbjct: 439 GFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQP 498
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D++ + K G RL+ + +F G + Y +I+ E EA
Sbjct: 499 DMHTYNTLVDGLCKQG-RLKD---AQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEA 554
Query: 390 LTVVWNMEASNCLFDLPAYRVVI 412
T++ ME + C+ D+ Y+ +I
Sbjct: 555 ETLLSKMEDNGCIPDVVTYQTII 577
>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
Length = 336
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFDLPAYR 409
E L S P V YT+L+ K+ EA V+ M NC D+ AYR
Sbjct: 191 AERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLKRMAKGGSNKNCKADMFAYR 250
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
+++ +S A+ +K++G P +DIY +IR L K +V +E ++
Sbjct: 251 MMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELRKAMEVLEEMTLS 310
>gi|255661128|gb|ACU25733.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 313
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAY 408
K V LF FT G DP Y +++ S + + +EA V+ M E + D+ Y
Sbjct: 162 KLSVACKLFEIFTSMGVDPVSYTYNSIMSSFVKKGYFKEAWGVLHAMGEETVSPADIATY 221
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL++ G +Y +I +GR+ + + ++ +
Sbjct: 222 NVIIQGLGKMGRADLANAVLDKLRKEGGYLDIVMYNTLINALGKAGRIDEASKLFQQMKA 281
Query: 469 AGFKLDKQTVVELLQIEKESR 489
+G D T L+++ ++R
Sbjct: 282 SGINPDVVTYNTLIEVNSKAR 302
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 2/185 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G K G L A +L A++G LD Y+ +I L + + V +LD++ +
Sbjct: 403 GLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE-GRLDEVAGVLDQM-TKHGC 460
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ C A++ +R K F G PTVV Y TLI+ ++ EA
Sbjct: 461 KPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYA 520
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+V M ++ Y +++ + A+ + + E GF P ++ +I
Sbjct: 521 LVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLC 580
Query: 452 ASGRL 456
+SG++
Sbjct: 581 SSGKV 585
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 1/122 (0%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q ++K+ R ++F + L +W G P V Y TLI+S +AL +
Sbjct: 150 QTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE 209
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK-LKEAGFCPTYDIYRDMIRIFMASG 454
M D+ Y ++I F DI A + + LK P Y MI G
Sbjct: 210 MPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCG 269
Query: 455 RL 456
+
Sbjct: 270 KF 271
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 5/167 (2%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G K G + AW L+ D G + Y LI L KN DK + ++ + + G +
Sbjct: 379 GLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQP 438
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D+ ++ G RL+ + LF G P V Y +I+ E EA
Sbjct: 439 DMYTLNILLHGLLCKGKRLKN---AQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEA 495
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
+ ME S C + ++++I + + +A + ++ G
Sbjct: 496 YALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
K DK M + L+ G D+ TA+ + G + V L H G P
Sbjct: 135 KKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNG----EVDVAIDLLHQLKGKGCSPV 190
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
++ Y T+I K +EAL ++ M + D+ Y + + I AIR F
Sbjct: 191 LISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFC 250
Query: 430 KLKEAGFCPTYDIYRDMI 447
K+++ G PT +Y ++
Sbjct: 251 KVQDMGIRPTVVLYNAIL 268
>gi|225439604|ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
mitochondrial-like [Vitis vinifera]
Length = 505
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 12/182 (6%)
Query: 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM----KVGIRLQKFGVVE 355
I + L + G + D+ + M + +LG + DC ++ K G+ + GV
Sbjct: 225 ILSSLCEQKGLSGDEVLRFMEEMRKLG----FYPGRVDCNNVIRFLVKEGMVMDALGV-- 278
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
F G P V YT +++ ++ +A + M + D+ AY V I
Sbjct: 279 --FDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDLFDEMLVLGVVPDIHAYNVYINSL 336
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
N+I +R + ++E G P Y Y ++ L R++ +E E+ G + +
Sbjct: 337 CKQNNIEEGVRMLASMRELGCKPDYVTYNMLLEGMSKVRDLGGMRELAREMELEGVQWNW 396
Query: 476 QT 477
+T
Sbjct: 397 ET 398
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G P+++ YTT+I AL ++ ME C D+ AY VI
Sbjct: 163 LFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLC 222
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+ A+ +FS++ + G P Y ++ F G+L + + K +M G +
Sbjct: 223 KDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFK--QMIGRNVMPN 280
Query: 477 TVVELLQIEKESRIGTI 493
TV + ++ + G I
Sbjct: 281 TVTFTILVDGLCKEGMI 297
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE----LG 326
+GF + G ++A KL G + D Y+ L+ L K+ LDE L
Sbjct: 394 QGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGH--------LDEAFRLLK 445
Query: 327 QRDDLNLSQQDCTAIMKVGIR-LQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLS 382
+ + C I + I+ + FG +E+ F++ G P+VV YT +I L
Sbjct: 446 AMQESKIEPHIC--IYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLK 503
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
E EA + M + CL + Y V I+ F+ D S A+R ++ GF
Sbjct: 504 EGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGF 557
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 110/264 (41%), Gaps = 10/264 (3%)
Query: 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL-KVPFKLENFVSLA 261
++ L + ++A+ FC K + P++ + + VL +L ++ LE
Sbjct: 346 IQALSKSGMVDKAILLFCNMIKN-NCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFI 404
Query: 262 SKGVLEATAKGFVKGGNLKLAWKL---LMVAKDGGRMLDPSIYAKLILELGKNPDKYMLV 318
+K + + K G+ A +L + DGG D Y ++ L + K +
Sbjct: 405 NKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGG---DRDAYISMLESLCRG-GKTVEA 460
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+ LL ++ ++ + T + +G +L++ + L+ G P + Y LI
Sbjct: 461 IELLSKVHEKGISTDTMMYNTVLSTLG-KLKQVSHLHDLYEKMKQDGPFPDIFTYNILIS 519
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
S K +EA+ V +E+S+C D+ +Y +I D+ A F ++++ G P
Sbjct: 520 SLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNP 579
Query: 439 TYDIYRDMIRIFMASGRLAKCRDV 462
Y +I F + ++ R +
Sbjct: 580 DVVTYSTLIECFGKTDKVEMARSL 603
>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PT+ +TTL+H + K EAL + ME D+ AY V+I A D + A
Sbjct: 827 PTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFEL 886
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ +++ CP Y ++ A+ L +
Sbjct: 887 YEEMRHRDLCPNITTYAVLVDAISAANNLIQ 917
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PT++ YTTL+ + K ++ +E + D Y +I F
Sbjct: 80 IFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFS 139
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
++ A++ F K+K+ G PT + +I+ + +G+
Sbjct: 140 ESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGK 178
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDEL 325
A F + GN+K A K+ KD G S + LI G P++ + ++ L+
Sbjct: 133 AMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSL- 191
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVES--LFHWFTHSGRDPTVVMYTTLIHSRLSE 383
D ++ D T + V K + E+ + H SG P VV Y L + +
Sbjct: 192 ----DGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQK 247
Query: 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
+ A ++ M+ + +++ + ++ A+R+ ++KE G P I+
Sbjct: 248 GETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIF 307
Query: 444 RDMIRIFM 451
+I+ F+
Sbjct: 308 NSLIKGFL 315
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 3/138 (2%)
Query: 348 LQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L G+V+S L G P VV YT LI + + +++ M +N +
Sbjct: 627 LSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPN 686
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
Y ++I L ++ A + +++ + G P Y + F G++ + VC
Sbjct: 687 KITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCD 746
Query: 465 EAEMAGFKLDKQTVVELL 482
G LD T L+
Sbjct: 747 LMSTGGISLDDITYTTLI 764
>gi|356577949|ref|XP_003557083.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 700
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Query: 296 LDPSIYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
LD + ++ LI + N DK + V + LG + ++ A++K QK
Sbjct: 269 LDAATFSALIKMYSMAGNYDKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKA----QKHRQ 324
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
++++ +G P + Y L+ EAL V M+ + Y ++
Sbjct: 325 AKAIYKEMKSNGVSPDFITYACLLEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNKLLA 384
Query: 414 LFVALNDISRAIRYFSKLKEAGFC-PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ + RA F ++K +G C P + MI ++ SG++++ + E +GF+
Sbjct: 385 MCADVGYTDRAAEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQ 444
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LFH G P VMY T+I + +A + +M+ + D AY ++I F
Sbjct: 334 LFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFC 393
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
+ A + F ++K AG P Y ++ +G
Sbjct: 394 RKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAG 431
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
Y ++ F+ N+++ A+ F ++ + G+ P +Y MI +GRL ++ +
Sbjct: 315 YSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMK 374
Query: 468 MAGFKLDKQ 476
AGFKLD++
Sbjct: 375 KAGFKLDRK 383
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G +P YT +I + S++K EA+ V ME + C D+ Y +I F I+R
Sbjct: 310 GCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRG 369
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMA 452
+ +K+ G P Y +RI +A
Sbjct: 370 YQILDAMKQKGHMPNQLTY---LRILLA 394
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
D+ M V ++ G D+ + K G + + +++++ G P +
Sbjct: 332 DEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAM----KQKGHMPNQLT 387
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y ++ + +++ E L ++ +M C+ DL Y VVI+L L ++ + ++ +++++
Sbjct: 388 YLRILLAHEKKEELEECLELIESMRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEME 447
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
+ F P D + MI F+ G L + + KE
Sbjct: 448 ASDFSPELDTFVIMIHGFLGQGCLVEACEYFKE 480
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
L+D L + D++ + K I + FGVV P + +Y LI
Sbjct: 304 LIDGLCKTDEM-------VSARKFLIDMASFGVV-------------PNIFVYNCLIDGY 343
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
EAL++ +E L D+ Y ++IK ++ + A ++K+ GF P
Sbjct: 344 CKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNA 403
Query: 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
Y +I + G + K +VC + G +
Sbjct: 404 VTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE 435
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V+ +TTLI + ++KK EA+ V + M++ C D Y +I F IS+
Sbjct: 294 EPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYE 353
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ + G P Y ++ L +C ++ +E G
Sbjct: 354 LLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG 397
>gi|297814374|ref|XP_002875070.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp.
lyrata]
gi|297320908|gb|EFH51329.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp.
lyrata]
Length = 582
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 4/183 (2%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD-L 331
F + G ++ + + + K+ G ++D Y LI + + D M L +E+ RDD
Sbjct: 136 FGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGD-VDGAMRLWEEM--RDDGC 192
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+ TA MK+ + ++ S P YT L+ + KC EAL
Sbjct: 193 EPTVVSYTAYMKILFADGRVEEATEVYKDMLRSRVSPNCHTYTVLMEYLVGTGKCEEALD 252
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ + M+ D PA ++I + S R +KE G Y I+ +
Sbjct: 253 IFFKMQEIGVQPDKPACNILIVKACKFGETSFMARILVYMKENGVVLRYPIFLEASETLK 312
Query: 452 ASG 454
A+G
Sbjct: 313 AAG 315
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 107/278 (38%), Gaps = 47/278 (16%)
Query: 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL----KVPFKLENFVSLASKGVLE 267
P AL+ F A +QP +E++ H + +V ++ + A+ G
Sbjct: 88 PAEALELFTAAARQPTAVHTTESCNYMLELMRAHGRVGDMAQVFDLMQKQIVKANVGTFA 147
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
G G L+ A L V ++ G L+ Y LI Y LV + D
Sbjct: 148 TVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLI---------YFLVKSGFD---- 194
Query: 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387
M+V + G P+V Y+ L+ +S K R
Sbjct: 195 -----------AEAMEV-------------YKAMVEDGISPSVRTYSVLM---VSFGKKR 227
Query: 388 EALTVVW---NMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ TV+W MEA ++ +Y + I++ A + K++++G P +
Sbjct: 228 DVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHT 287
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I++ +GRL+ +DV + + + K D+ T + LL
Sbjct: 288 VVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLL 325
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ R + G+ + +F+ G P + YT +I K EA+ +M
Sbjct: 462 NAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVE 521
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ C+ D+ A +I + A + F +LKE PT Y ++ GR K
Sbjct: 522 TGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLS---GLGREGK 578
Query: 459 CRDV 462
++V
Sbjct: 579 VKEV 582
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 348 LQKFGVVESLFHWF---THSGRDPTVVMYTTLIH--SRLSEKKCREALTVVWNMEASNCL 402
L + G V+ + H THS P ++ Y T++ S+ E C A+ ++++M C
Sbjct: 573 LGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNC--AIGMLYSMTEKGCT 630
Query: 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
DL +Y V+ + A R F ++K+ P Y ++ F+ +G + +
Sbjct: 631 PDLSSYNTVMYGLIKEERFEEAFRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEALHT 689
Query: 463 CKE 465
KE
Sbjct: 690 VKE 692
>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
Length = 1356
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PT+ +TTL+H + K EAL + ME D+ AY V+I A D + A
Sbjct: 1002 PTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFEL 1061
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ +++ CP Y ++ A+ L +
Sbjct: 1062 YEEMRHRDLCPNITTYAVLVDAISAANNLIQ 1092
>gi|449479644|ref|XP_004155662.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Cucumis sativus]
Length = 411
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Query: 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372
DK +L +++ G +L TA+ G +F ES++ + P ++
Sbjct: 214 DKAILFFNDMEKNGTEPNLVTFNTLLTALYSKG----QFLDGESMWARMENKNIAPDLIS 269
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
Y + + EK+ ++ + ++ ME + ++ +Y ++I+ F D+ +A +++ KLK
Sbjct: 270 YNARLQRMVLEKRIQDGIQLLAEMEKA-IKPNVDSYYILIEGFCEDGDLEQAKQWYYKLK 328
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
+ P IYR ++ ++ G +CKE+
Sbjct: 329 DNEVNPNASIYRTLLPLYCEKGDFDSGLQLCKES 362
>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PT+ +TTL+H + K EAL + ME D+ AY V+I A D + A
Sbjct: 1753 PTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFEL 1812
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+ +++ CP Y ++ A+ L +
Sbjct: 1813 YEEMRHRDLCPNITTYAVLVDAISAANNLIQ 1843
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 101/256 (39%), Gaps = 11/256 (4%)
Query: 242 LARHHELKVPFKLENFVSLASKG----VLEATA--KGFVKGGNLKLAWKLLMVAKDGGRM 295
L R+ EL+ F+ S+ +G ++ T+ +GF K G + A +++ + +D G +
Sbjct: 94 LVRNGELEEGFRF--LESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAV 151
Query: 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355
D Y LI + + ++M LL ++ +R + S ++ R G
Sbjct: 152 PDVITYNVLISGMC-STGRWMDAEKLLADMVRRG-CSPSVVTFNILINFLCRKGLLGRAI 209
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+ G P + Y L+H EKK A+ + M + C D+ Y ++
Sbjct: 210 DVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTAL 269
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ A+ ++L G P Y +I G+ + + E G K D
Sbjct: 270 CKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDI 329
Query: 476 QTVVELL-QIEKESRI 490
T L+ + +E ++
Sbjct: 330 ITYSSLVGGLSREGKV 345
>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
Length = 859
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T ++ + + ++FG + L PTVV Y +IH+ REA+ V M+
Sbjct: 370 TTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQK 429
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ D Y +I + + A+ +++++E G P Y M+ G LA
Sbjct: 430 AGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLA 488
>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
aristata]
Length = 382
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 4 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 61
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 62 LIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 121
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 122 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 155
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 4 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + AG + + LL + E++
Sbjct: 64 GEMKAAGVMPNTXSYSTLLTMYVENK 89
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 14/237 (5%)
Query: 219 FCWAQKQPHLFPDDRLLASTVEVLAR---HHELKVPFKLENFVSLASKGVLEAT-AKGFV 274
F WA+ +P + S +EV H E FK E T +GF
Sbjct: 4 FQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFC 63
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGK--NPDKYMLVMTLLDELGQRDD 330
K + A LL K G + P+I + LI +L + DK + + + ++ + D
Sbjct: 64 KAEQIPQAVNLLGEMKAAG--ITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPD 121
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L T ++ ++ K + S F SG P V YT L+HS K +
Sbjct: 122 AFLY----TVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGH 177
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ M + +L Y V+ + I +A+ +LK G P+ +Y +I
Sbjct: 178 QIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLI 234
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Query: 349 QKFGVV---ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
KFG V + +F G P + ++ L+ K +A+ + +ME C+ D
Sbjct: 283 SKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDT 342
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y +I F+++ + ++Y+ L P D Y MI + + ++A ++ E
Sbjct: 343 NVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKVADALEMFDE 402
Query: 466 AEMAGFKLDKQTVVELLQ 483
G TV ++
Sbjct: 403 MLDRGMVTKTGTVTSFIE 420
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
++L FG S+ G +P+VV +T LI+ + A+ +V ++E + D+
Sbjct: 124 LKLVAFGF--SVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDV 181
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y V+I + S A+ + K++E + P +Y ++ G +++ +C E
Sbjct: 182 KTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLE 241
Query: 466 AEMAGFKLDKQTVVELLQ 483
G K + T L+Q
Sbjct: 242 MSGKGIKPNLVTYTCLIQ 259
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 56/142 (39%)
Query: 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395
Q C I+ + Q SLFH S D +V+Y+ ++ S K AL +
Sbjct: 427 QTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSC 486
Query: 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
+ A ++ AY ++I F + +A S ++E G P Y ++ +A
Sbjct: 487 LPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAERE 546
Query: 456 LAKCRDVCKEAEMAGFKLDKQT 477
+A+ GF +D T
Sbjct: 547 IARSIKYLTMMRDKGFSVDATT 568
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 12/196 (6%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLL 322
V G K G + A L + + G+ + P++ Y LI L N ++ +LL
Sbjct: 218 VYSTVMDGLCKDGLVSEALGLCL--EMSGKGIKPNLVTYTCLIQGLC-NFGRWKEAGSLL 274
Query: 323 DEL---GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379
DE+ G DL Q ++ V + K +S+ + G P V Y +LI
Sbjct: 275 DEMMKMGVMPDL----QSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDR 330
Query: 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439
+ + EA V M + CL D+ AY +I + + +I++A+ ++ + GF P
Sbjct: 331 YCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPD 390
Query: 440 YDIYRDMIRIFMASGR 455
+ +I F GR
Sbjct: 391 VVTWTTLIGGFCQVGR 406
>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V+ +TTLI + ++KK EA+ V + M++ C D Y +I F IS+
Sbjct: 186 EPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYE 245
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ + G P Y ++ L +C ++ +E G
Sbjct: 246 LLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG 289
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 70/358 (19%), Positives = 127/358 (35%), Gaps = 44/358 (12%)
Query: 123 RERPLPLPLPHRLRP--LELPTPKKRVCLASSRASICKQVYKNPSFLISLARDIKGLDSH 180
R+ P P P+ P + L KR ++ + + + S+ R G
Sbjct: 14 RQPPSPCPVAGGAAPRHVALAARGKRRGAGAAGEEGVDEAAEAAELVRSVLRRTAG--GK 71
Query: 181 KDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE 240
+ + VLD+ R +R ELG + + L+ F W QKQ D+ + + +
Sbjct: 72 ERLVPVLDRHVRGVRTEHCFLLFEELGRRDAWLQCLEVFRWMQKQRWYVADNGIYSKLIS 131
Query: 241 VLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI 300
V+ R G +++A L ++ G D S+
Sbjct: 132 VMGRK-------------------------------GQIRMAMWLFSQMRNSGCKPDTSV 160
Query: 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV------V 354
Y LI + DK L LG + + + I+ I L+ F V
Sbjct: 161 YNSLIGAHLHSRDK---SKALAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQV 217
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
+ LF S P + Y ++ + +E +V+ M++ C D+ + ++I
Sbjct: 218 DILFKDLDESVVSPDIYTYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDS 277
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ + + F L + PT+ + MI + + K V K+ E G+K
Sbjct: 278 YGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYK 335
>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Vitis vinifera]
Length = 679
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/316 (19%), Positives = 116/316 (36%), Gaps = 26/316 (8%)
Query: 181 KDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE 240
+++ VLD+C L + + H P A + FCWA ++ + R + +
Sbjct: 220 RNMEAVLDECNVDLSHALVVGVLERFKHARKP--AFRFFCWAGQKAGFTHNSRTYNAMMS 277
Query: 241 VLARHHEL------------KVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288
VL R + K +E F K V L +
Sbjct: 278 VLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAG 337
Query: 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
+LD AKL E L ++L R NL + T ++ R+
Sbjct: 338 VDTINCLLDNLGRAKLGKE----------AQALFEKLEDRFTPNL--RTYTVLLNGWCRI 385
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
+ ++ G P ++ + T++ L KK +A+ + M+A ++ Y
Sbjct: 386 KNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTY 445
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
++I+ + A+ YF ++ ++G P +Y +I F ++ K + KE +
Sbjct: 446 TILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKE 505
Query: 469 AGFKLDKQTVVELLQI 484
G D +T L+++
Sbjct: 506 KGCPADGRTYNALIKL 521
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
+ LLDE+ +R+ L S A++ + + L T SG P VV+Y+TLI
Sbjct: 135 LELLDEMEKRN-LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 193
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
SE + EA ++ M S D+ Y +I + A Y +++ G P
Sbjct: 194 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 253
Query: 439 TYDIYRDMIRIFMASGRLAK 458
+ I + +G++ +
Sbjct: 254 DAVTFGAFILGYSKTGKMTE 273
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G P +YT LI+ EAL++ ++ A L D+ I +
Sbjct: 278 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLK 337
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ A++ FS+LKE G P Y +I F G + K ++ E + G
Sbjct: 338 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 391
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L++ G +P V Y TLIH S K EA++V ME + + Y +I F
Sbjct: 335 LWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFA 394
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
D+ A ++K+ G P +Y M+ +
Sbjct: 395 KAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVL 428
>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
salviifolia]
Length = 378
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 27 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLSMYVENKKFLEALSVFSEMRE 86
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 87 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 138
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
L D S+AI FS+LK +GF P Y MI +F + + R + E + AG + +
Sbjct: 1 LCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTS 60
Query: 478 VVELLQIEKESR 489
LL + E++
Sbjct: 61 YSTLLSMYVENK 72
>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
cujabensis]
Length = 359
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R A++ V + + F S
Sbjct: 3 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGFTPDLVAYNAMINVFGKAKLFREARS 60
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L G P Y+TL+ + KK EAL+V M CL DL ++I ++
Sbjct: 61 LISEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYG 120
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L A + F +++ G P Y ++R++
Sbjct: 121 QLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 154
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
DL Y +I+L L D S+AI FS+LK +GF P Y MI +F + + R +
Sbjct: 3 DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62
Query: 464 KEAEMAGFKLDKQTVVELLQIEKESR 489
E + G + + LL + E++
Sbjct: 63 SEMKTXGVMPNTTSYSTLLTMYVENK 88
>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 97/249 (38%), Gaps = 24/249 (9%)
Query: 210 NLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG----- 264
N+ + AL+ C + ++FP + S ++ L +L + + + S+G
Sbjct: 165 NMTQVALKLIC-KMRHLNIFPLIGVCNSLLKALLESEQLNLAWDF--LKEMKSQGLGLNA 221
Query: 265 -VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-----LELGKNPDKYMLV 318
++ G+ GN+ WKLLM K G D Y +I + L K +
Sbjct: 222 SIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFK 281
Query: 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378
MT ++G D KVG + V+E P + ++ + I
Sbjct: 282 MT---QMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVF-------NLSPNIFVFNSFIS 331
Query: 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
++ +A V +M + D +Y ++ + + DIS A++Y K+ + G P
Sbjct: 332 KLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRP 391
Query: 439 TYDIYRDMI 447
+ Y +I
Sbjct: 392 SVATYTLLI 400
>gi|225428364|ref|XP_002283311.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38150-like [Vitis vinifera]
Length = 380
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 348 LQKFGVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G+V+ LF G P VV+YT ++ ++ +A+ + M+ + +
Sbjct: 219 LCKDGLVQEAMKLFGLMREKGTIPEVVIYTAVVEGFCKARQLNDAVRIFRKMQNNGISPN 278
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
+Y V+I+ N + A+ + ++ EAG P D+I F + + ++V
Sbjct: 279 AFSYTVLIRGMYKGNRLDIAVDFCVEMLEAGHSPNVATLVDLIHEFCKEKGVEEAKNVIV 338
Query: 465 EAEMAGFKLDKQTVVELL 482
+ G +D + V E L
Sbjct: 339 TLKQKGLFVDDKAVREYL 356
>gi|255661206|gb|ACU25772.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 399
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
D +Y+ LI EL + Y +++ L +R + +++ V + + F S
Sbjct: 16 DLVLYSNLI-ELSRKLCDYSKAISIFSRL-KRSGIXPDLVAYNSMINVFGKAKLFKEARS 73
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L +G P V Y+TL+ + +K EAL+V M C FDL ++I ++
Sbjct: 74 LIXEMKTAGVMPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSFDLTTCNIMIDVYG 133
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
L+ A + F +++ G P Y ++R++
Sbjct: 134 QLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVY 167
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 18/251 (7%)
Query: 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG 293
L ++ +L HH +L +F A+K V +G ++G + W + G
Sbjct: 166 LFSTASSLLQSHH------RLSDFA--AAKFVKAYGDRGDIRGA---IHWFHRAKKMESG 214
Query: 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
R L IL + ++ ML + D++ + + T I++ K G+
Sbjct: 215 RCL---FSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIR---GYCKMGM 268
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAYRVVI 412
+E+ + F G P +V Y T+I+ + A+ +V M E +C+ D Y +I
Sbjct: 269 IENAKNVFDEMGCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLI 328
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
+ ++ A++Y ++ P Y +I +G + + + + + G K
Sbjct: 329 DGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLK 388
Query: 473 LDKQTVVELLQ 483
+ T +L+
Sbjct: 389 DNVATHTSILK 399
>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 52/119 (43%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ K G +E G P + ++ LI + +A+ V +ME + C+ +
Sbjct: 241 KYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNAC 300
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y +I F++ D ++Y++ + + P D Y +I F+ + ++A ++ E
Sbjct: 301 VYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDE 359
>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
barbata]
Length = 364
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
A++ V + + F SL +G P Y+TL+ + KK EAL+V M
Sbjct: 26 NAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMRE 85
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
CL DL ++I ++ L A + F +++ G P Y ++R++
Sbjct: 86 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 137
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
D S+AI FS+LK +GF P Y MI +F + + R + E + AG + +
Sbjct: 2 DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYS 61
Query: 480 ELLQIEKESR 489
LL + E++
Sbjct: 62 TLLTMYVENK 71
>gi|255661102|gb|ACU25720.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 311
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 2/140 (1%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K + LF FT+ G DP Y +++ S + + +EA V+ M + D+ Y
Sbjct: 161 KLSIACKLFEIFTNMGVDPVSYTYNSIMSSFVKKGYFKEAWGVLHAMGETXNPADIATYN 220
Query: 410 VVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL KE G+ +Y +I +GR+ + + ++ +
Sbjct: 221 VIIQGLGKMGRADLANAVLDKLMKEGGYLDIV-MYNTLINALGKAGRIDEANKLFEQMKA 279
Query: 469 AGFKLDKQTVVELLQIEKES 488
+G D T L+++ ++
Sbjct: 280 SGINPDVVTYNTLIEVHXKT 299
>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 6/213 (2%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG + A+KLL V K G+ + IY +I L KN K +L++E+ + D
Sbjct: 241 KGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKN-GKVGRARSLMNEMVEPSD 299
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ + +A + +Q ++E F G P VV T ++ + E +
Sbjct: 300 VTFNVL-ISAYCQEENLVQALVLLEKSFSM----GFVPDVVTATKVVGILCKAGRVTEGV 354
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ +E+ + D+ AY +IK F L R ++ G P D Y + +
Sbjct: 355 EVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASGY 414
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
SG L D+ + + G + T L++
Sbjct: 415 CDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIR 447
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 41/295 (13%)
Query: 202 TVRELGHMNLPER----ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK-VPFKLEN 256
T + + H+ L ++ ALQTF WA P+ + + + L + V L+
Sbjct: 93 THQHIAHLILEQKSASQALQTFRWASNLPNFIHNQSTYRALIHKLCSFRRFETVKEVLDE 152
Query: 257 FVSLASKGVLEATAKGFVKG-GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY 315
S E+ V+G G ++ +++ ++LD LI + G+NP
Sbjct: 153 MPSSIGSPPDESIFVTIVRGLGRARMVRQMI-------KVLD------LITKFGENP-SL 198
Query: 316 MLVMTLLDELGQRD-DL------------NLSQQDCT-AIMKVGIRL-QKFGVVESLFHW 360
+ ++LD L + D DL +S D T I+ G+ L + G L
Sbjct: 199 KIFNSILDVLVKEDIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQV 258
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLFDLPAYRVVIKLFVALN 419
G+ P V+Y T+IH+ K A +++ M E S+ F+ V+I +
Sbjct: 259 MKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEMVEPSDVTFN-----VLISAYCQEE 313
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
++ +A+ K GF P ++ I +GR+ + +V + E G +D
Sbjct: 314 NLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVD 368
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L + G PT + LI + + K AL ++ +M CL D+ +Y ++
Sbjct: 566 LINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALC 625
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
D +A+R F ++ E P Y + M+
Sbjct: 626 NKGDFQKAVRLFLQMVEKDILPDYSTWNSML 656
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414
E+L G +P VV+Y LI + A+ V M+ + C ++ Y +I
Sbjct: 197 ETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISG 256
Query: 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
F + RA+ FS++ +AG P Y +I+ + G+L + + E +G +
Sbjct: 257 FCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPN 316
Query: 475 KQTVVELLQ-IEKESRIG 491
+ T L+ + K R+G
Sbjct: 317 EWTCSVLIDALCKHERVG 334
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%)
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
T YT L+H REA++V M+A C D Y ++ A
Sbjct: 141 TAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLL 200
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
S GF P +Y +I + G L DV + ++ G + +T EL+ +S
Sbjct: 201 SDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKS 260
Query: 489 R 489
R
Sbjct: 261 R 261
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 53/128 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F G P +Y T++H + REA T++ + A ++ Y +I +
Sbjct: 163 SVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGY 222
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
+ D+ A+ F ++ G P Y ++I F S +L + + AG +
Sbjct: 223 CNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNV 282
Query: 476 QTVVELLQ 483
T L+Q
Sbjct: 283 VTYTALIQ 290
>gi|255661084|gb|ACU25711.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 429
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K V LF FT+ G DP Y +++ S + + +EA +V+ M + D+ Y
Sbjct: 279 KLSVACKLFEIFTNMGVDPASYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYN 338
Query: 410 VVIKLFVALNDISRAIRYFSKL-KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
V+I+ + A KL KE G+ +Y +I +GR+ + + ++ +
Sbjct: 339 VIIQGLGKMGRADLANAVLEKLMKEGGYLDIV-MYNTLINALGKAGRIDEANKLFEQMKA 397
Query: 469 AGFKLDKQTVVELLQIEKES 488
+G D T L+++ ++
Sbjct: 398 SGINPDVVTYNTLIEVHSKA 417
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 97/267 (36%), Gaps = 28/267 (10%)
Query: 225 QPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG------VLEATAKGFVKGGN 278
Q + P+ + ++ L +H EL +L + + KG + + G K GN
Sbjct: 461 QMGMTPNIVTYGALIDGLCKHGELDTANELLD--EMRKKGLQLNVCIYNSMVNGICKAGN 518
Query: 279 LKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLSQ 335
++ A KL+ + G D Y +I LG + L+ +LD Q
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ-------- 570
Query: 336 QDCTAIMKVGIRLQKF---GVVES---LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
++ + + F G++E L W G P + Y TL+
Sbjct: 571 ---PTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTT 627
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
+ M D Y ++IK ++ A + ++ E G+ PT Y +I+
Sbjct: 628 TKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKR 687
Query: 450 FMASGRLAKCRDVCKEAEMAGFKLDKQ 476
F + + R++ +E G D +
Sbjct: 688 FYKKRKFXEARELFEEMRGHGLVADGE 714
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 8/152 (5%)
Query: 348 LQKFG----VVE--SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
+Q FG V+E +LFH G P V YTTLI + A ++ M
Sbjct: 405 IQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGM 464
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++ Y +I ++ A ++++ G IY M+ +G + +
Sbjct: 465 TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIK 524
Query: 462 VCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
+ KE E+AG +D + I+ R+G I
Sbjct: 525 LMKEMEVAG--IDPDAITYTTVIDAYCRLGDI 554
>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
Length = 561
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 52/119 (43%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+ K G +E G P + ++ LI + +A+ V +ME + C+ +
Sbjct: 282 KYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNAC 341
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y +I F++ D ++Y++ + + P D Y +I F+ + ++A ++ E
Sbjct: 342 VYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDE 400
>gi|125536370|gb|EAY82858.1| hypothetical protein OsI_38069 [Oryza sativa Indica Group]
Length = 459
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
PTV + +L+ + E KC + V+ M+ +C+ ++ Y + + + ++ +A
Sbjct: 212 PTVHTFNSLLLAFYREGKCDDFKVVLQEMDRYSCVHNVCTYSIRMAAYCDSKEVEKARGL 271
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
+ ++ E G P Y MI + G + ++ K+ EM G
Sbjct: 272 WDEMVEGGIQPDVAAYNTMISGYCGVGEVGMAEEMFKDMEMGGI 315
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 6/174 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP--DKYMLVMTLLDELGQRD 329
G K G L A K+ A+DG LD Y+ ++ L K D+ + ++ +D+ G +
Sbjct: 405 GLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKL 464
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
D ++ C ++ +R K + F G PT+V Y TLI ++ EA
Sbjct: 465 DPHV----CNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEA 520
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443
+ V M D+ +++ I A+ + + + GF P +Y
Sbjct: 521 YSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMY 574
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,460,989,126
Number of Sequences: 23463169
Number of extensions: 311211647
Number of successful extensions: 743622
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 697
Number of HSP's that attempted gapping in prelim test: 732493
Number of HSP's gapped (non-prelim): 10768
length of query: 493
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 346
effective length of database: 8,910,109,524
effective search space: 3082897895304
effective search space used: 3082897895304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)