BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011102
         (493 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
          Length = 945

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
           TT+ +S+      R++   + NM   NC      Y  + K+ V LND   A++ F KLKE
Sbjct: 195 TTVTNSKFRSSILRKSFDFLMNM--PNC-----DYLTLNKVVVNLNDAGLALQLFKKLKE 247


>pdb|3EYT|A Chain A, Crystal Structure Of Thioredoxin-Like Superfamily Protein
           Spoa0173
 pdb|3EYT|B Chain B, Crystal Structure Of Thioredoxin-Like Superfamily Protein
           Spoa0173
 pdb|3EYT|C Chain C, Crystal Structure Of Thioredoxin-Like Superfamily Protein
           Spoa0173
 pdb|3EYT|D Chain D, Crystal Structure Of Thioredoxin-Like Superfamily Protein
           Spoa0173
          Length = 158

 Score = 28.9 bits (63), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 222 AQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258
           AQK    FP+D++    +  +  HHE   P  L+ F+
Sbjct: 51  AQKVRAAFPEDKVAVLGLHTVFEHHEAXTPISLKAFL 87


>pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g19940
 pdb|1XYG|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g19940
 pdb|1XYG|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g19940
 pdb|1XYG|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g19940
 pdb|2Q49|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g19940
 pdb|2Q49|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g19940
 pdb|2Q49|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g19940
 pdb|2Q49|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g19940
          Length = 359

 Score = 28.5 bits (62), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 14/97 (14%)

Query: 194 LRKGSLSFTVRELGHMNLPERAL----QTFCWAQKQPHLFPDDRLLASTVEVLAR----- 244
           + +G  S+ V    H+   E+ L    Q+       PHL P  R + ST+ V        
Sbjct: 210 IAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRT 269

Query: 245 ---HHELKVPFKLENFVSLASKGVLEATAKGFVKGGN 278
              H +LK  ++ E FV +  +GV+  T    V+G N
Sbjct: 270 EDLHQQLKTSYEDEEFVKVLDEGVVPRTHN--VRGSN 304


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,194,389
Number of Sequences: 62578
Number of extensions: 501674
Number of successful extensions: 1192
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 5
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)