BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011102
(493 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XET4|PP142_ARATH Pentatricopeptide repeat-containing protein At2g01860
OS=Arabidopsis thaliana GN=EMB975 PE=2 SV=1
Length = 486
Score = 577 bits (1488), Expect = e-164, Method: Compositional matrix adjust.
Identities = 297/489 (60%), Positives = 372/489 (76%), Gaps = 16/489 (3%)
Query: 8 MSLH-PVVLSNRIFPISKNNNITTTLMAHSNQRRRPTTTRH--PKLPKNLQNPRRTKLPP 64
M LH PV LS +S + N+ T+ + + R + R+ KL KNL+NPRRTKLPP
Sbjct: 1 MILHCPVSLS-----LSFHLNLRTSRIGNIGVTRVNASQRNHSKKLTKNLRNPRRTKLPP 55
Query: 65 DFGVNLFLKKPSDEYDPIKADSVEEQEADND----FIWESEELEAISSLFQGRIPQKPGR 120
DFGVNLFL+KP E I D + QE+ ND +WE EE+EAISSLFQ RIPQKP +
Sbjct: 56 DFGVNLFLRKPKIEPLVIDDDDEQVQESVNDDDDAVVWEPEEIEAISSLFQKRIPQKPDK 115
Query: 121 LYRERPLPLPLPHRLRPLELPTPKKRVCLASSRASICKQVYKNPSFLISLARDIKGL-DS 179
R RPLPLP PH+LRPL LPTPKK + + + +S+ KQVYK+PSFLI LAR+IK L S
Sbjct: 116 PSRVRPLPLPQPHKLRPLGLPTPKKNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSS 175
Query: 180 HKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTV 239
DV+ VL+K FLRKGSLS T+RELGHM LPERALQT+ WA+K HL PD+R+LAST+
Sbjct: 176 DADVSLVLNKWVSFLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTI 235
Query: 240 EVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS 299
+VLA+HHELK+ K +N SLASK V+EA KG ++GG L LA KL++++K R+LD S
Sbjct: 236 QVLAKHHELKL-LKFDN--SLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSS 292
Query: 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359
+Y K+ILE+ KNPDKY LV+ LL+EL +R+DL LSQQDCT+IMK+ ++L +F +VESLF
Sbjct: 293 VYVKMILEIAKNPDKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFD 352
Query: 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
WF S R+P+VVMYTT+IHSR SE+K REA++VVW ME SNCL DLPAYRVVIKLFVAL+
Sbjct: 353 WFKASNREPSVVMYTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALD 412
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
D+ RA+RY+SKLKEAGF PTYDIYRDMI ++ ASGRL KC+++CKE E AG +LDK T
Sbjct: 413 DLGRAMRYYSKLKEAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSF 472
Query: 480 ELLQIEKES 488
LLQ+EK++
Sbjct: 473 RLLQLEKQT 481
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQR 328
GF K + + AW ++ + IY +I ++G+ ++ L+ E +R
Sbjct: 528 GFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKE--KR 585
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKK 385
++ CT+ + K G +S + + +G+ P VV +T+LI+ +
Sbjct: 586 YSMS-----CTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNR 640
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
AL + M++ DLPAY +I F ND+ A FS+L E G P +Y
Sbjct: 641 MDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNS 700
Query: 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+I F G++ D+ K+ G D T ++
Sbjct: 701 LISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMI 737
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 2/211 (0%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G+ K ++ A LL + G P+ Y LI LGK +Y L EL + +
Sbjct: 418 GYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK-AKRYEAANELFKEL-KENFG 475
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
N+S + ++K + K LF+ + G P V Y L+ + EA +
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANS 535
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ ME + C D+ ++ +++ F RAI F +K +G P Y ++ F
Sbjct: 536 LLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
+G + + +E + GF+ D T +L
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSIL 626
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA-YRVVIKLFVALNDISRAIR 426
P + Y+ LI S + A+ + M+ NC+ Y ++ ++ + + +A+
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMK-DNCMQPTEKIYTTLLGIYFKVGKVEKALD 289
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F ++K AG PT Y ++I+ +GR+ + K+ G D + L+ I
Sbjct: 290 LFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNI 347
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 10/260 (3%)
Query: 216 LQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFK-----LENFVSLASKGVLEATA 270
+Q F WA K+ + D + + L ++ + N S VL
Sbjct: 110 IQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELV 169
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDP--SIYAKLILELGKNPDKYMLVMTLLDELGQR 328
K + + A + AK GR P S Y +IL L + ++ V + E+
Sbjct: 170 KALGRAKMVSKALSVFYQAK--GRKCKPTSSTYNSVILMLMQE-GQHEKVHEVYTEMCNE 226
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D +A++ +L + LF + PT +YTTL+ K +
Sbjct: 227 GDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEK 286
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
AL + M+ + C + Y +IK + A ++ + G P +++
Sbjct: 287 ALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMN 346
Query: 449 IFMASGRLAKCRDVCKEAEM 468
I GR+ + +V E M
Sbjct: 347 ILGKVGRVEELTNVFSEMGM 366
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 340 AIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+I+ G+ R +K + L+H F SG + V+M+ LIH S K +A+TV+ NME
Sbjct: 538 SILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEH 597
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
NC +L Y +++ F + D +RA + + + G P Y +++ L
Sbjct: 598 RNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMK------GLCM 651
Query: 459 CRDV 462
CR V
Sbjct: 652 CRGV 655
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 2/185 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G G + A ++ + G LD YA +I L K + L+ E+ + +
Sbjct: 403 GLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKK-RLEEASNLVKEM-SKHGV 460
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
L+ C A++ IR + G +G PTVV Y LI K EA
Sbjct: 461 ELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASA 520
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
V M + DL Y +++ I A+ + + ++G ++ +I
Sbjct: 521 FVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLC 580
Query: 452 ASGRL 456
+ G+L
Sbjct: 581 SVGKL 585
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 39/318 (12%)
Query: 170 LARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLF 229
L I L S++ VA++LD + F V+ +G + +RAL+ F W +
Sbjct: 130 LTDKILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESW-QRALEVFEWLNLRHWHS 188
Query: 230 PDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVA 289
P+ R++A+ + VL R N SLA +E + G+ + +M
Sbjct: 189 PNARMVAAILGVLGRW----------NQESLA----VEIFTRAEPTVGDRVQVYNAMM-- 232
Query: 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNLSQQDCTAIMKVGI 346
+Y++ K+ L+D + QR DL A +K G
Sbjct: 233 ---------GVYSR--------SGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGG 275
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
V L +SG P + Y TL+ + + A+ V +MEA C DL
Sbjct: 276 LTPNLAV--ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLW 333
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +I ++ + A R F +L+ GF P Y ++ F K ++V ++
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 467 EMAGFKLDKQTVVELLQI 484
+ GF D+ T ++ +
Sbjct: 394 QKMGFGKDEMTYNTIIHM 411
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
V+ ++ +G PT+ +Y +I K+ R+A +V ME +N +L + ++K
Sbjct: 876 VKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLK 935
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
++ A+ D + ++ + ++KE G P Y +I ++ CRD
Sbjct: 936 MYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY--------CRD 975
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 7/217 (3%)
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS-IYAKLILELGKNP--DKYML 317
AS+ V ++ + K G + A +++ A+ G S +Y +I GK K
Sbjct: 714 ASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAES 773
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
V+ L + G+ DL +A + G + ++F+ G PTV L+
Sbjct: 774 VVGNLRQSGRTPDLKTWNSLMSAYAQCGC----YERARAIFNTMMRDGPSPTVESINILL 829
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
H+ + + E VV ++ + +++ F +I + +S +K AG+
Sbjct: 830 HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL 889
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474
PT +YR MI + R+ + E E A FK++
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431
MYT +I + +K ++A +VV N+ S DL + ++ + RA F+ +
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491
G PT + ++ GRL + V +E + GFK+ K ++ LL ++ +R G
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSI--LLMLDAFARAG 871
Query: 492 TI 493
I
Sbjct: 872 NI 873
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 4/180 (2%)
Query: 296 LDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353
LDP + Y LI GK L +EL + L L + +MK+
Sbjct: 993 LDPKLDTYKSLISAFGKQK-CLEQAEQLFEELLSKG-LKLDRSFYHTMMKISRDSGSDSK 1050
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
E L ++G +PT+ L+ S S +EA V+ N++ + Y VI
Sbjct: 1051 AEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVID 1110
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
++ D + I ++K+ G P + I+ +R S + + K E GF L
Sbjct: 1111 AYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIGFDL 1170
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V+ YT+L++ + +AL + M+ D+PAY +I F +++
Sbjct: 613 NGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMES 672
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A FS+L E G P+ IY +I F G + D+ K+ G + D T L+
Sbjct: 673 ASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLI 731
Score = 32.7 bits (73), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 47/104 (45%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P+ YT++I + + + +A+ + M + ++ A +I ND+ A+
Sbjct: 302 PSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVL 361
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
F K+++ G P + +I F +G + K + K+ E+ G
Sbjct: 362 FDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGL 405
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 115/288 (39%), Gaps = 6/288 (2%)
Query: 200 SFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST-VEVLARHHELKVPFKLENFV 258
++ +RELG+ N ++A+ + +A K+ + LAS + L R+ ++ + ++
Sbjct: 200 TYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETA 259
Query: 259 SLASKG----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK 314
G A + + G + A + K+ G + Y +I GK +
Sbjct: 260 FAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGME 319
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
+ V DE+ QR+ + + +++ V R + +LF T+ + V Y
Sbjct: 320 FKQVAKFFDEM-QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
TL+ + + A ++ M + ++ +Y VI F A+ F +++
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
G Y ++ I+ GR + D+ +E G K D T LL
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALL 486
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
K K+ LV +L+ L ++ N S+ D ++ +L F E + + G P
Sbjct: 114 KQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPN 173
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
V+ YT L+ S KC A + M++S Y++++K FV + A F
Sbjct: 174 VISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFE 233
Query: 430 KL---KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479
L K++ P +Y MI ++ +G K R V + M G + + TV
Sbjct: 234 TLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVF--SSMVGKGVPQSTVT 284
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Query: 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374
Y V + D++ QR D+ ++K R ++ S+F +G PT Y
Sbjct: 295 YKEVSKIYDQM-QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 353
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
L+ + +A TV +M DL +Y ++ +V +D+ A ++F ++K
Sbjct: 354 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 413
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
GF P Y +I+ + + + K +V ++ ++G K ++ + ++
Sbjct: 414 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIM 461
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G + V Y +L+ S K E + M+ S+ D+ +Y ++IK +
Sbjct: 269 VFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSDIQPDVVSYALLIKAYG 325
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464
A+ F ++ +AG PT+ Y ++ F SG + + + V K
Sbjct: 326 RARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFK 373
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG---KNPDKYMLVMTLLDELGQR 328
G+ G + A+ L+ + G + + Y LI L K D+ M V ++ G
Sbjct: 280 GYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCE 339
Query: 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388
D+ + K G+ + + V++ + G P+ V Y ++ + +++ E
Sbjct: 340 ADIVTYTALISGFCKWGMIDKGYSVLDDM----RKKGVMPSQVTYMQIMVAHEKKEQFEE 395
Query: 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448
L ++ M+ C DL Y VVI+L L ++ A+R +++++ G P D + MI
Sbjct: 396 CLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMIN 455
Query: 449 IFMASGRL 456
F + G L
Sbjct: 456 GFTSQGFL 463
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 40/268 (14%)
Query: 219 FCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLE-----ATAKGF 273
F WA KQP F + S V +L++ + + L + + ++E + F
Sbjct: 118 FLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRF 177
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN-----------------PDKYM 316
+K A ++L G D ++ L+ L KN P
Sbjct: 178 ASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLR 237
Query: 317 LVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR---------- 366
+LL + L +++ + + G+ V +L + H+G+
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLE-PDIVVFTNLLSGYAHAGKMADAYDLMND 296
Query: 367 ------DPTVVMYTTLIHSRL-SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419
+P V YT LI + +EK+ EA+ V ME C D+ Y +I F
Sbjct: 297 MRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWG 356
Query: 420 DISRAIRYFSKLKEAGFCPTYDIYRDMI 447
I + +++ G P+ Y ++
Sbjct: 357 MIDKGYSVLDDMRKKGVMPSQVTYMQIM 384
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRD 329
GF K G+ + A AK + L+ SIY K+I + N ++ ++ ++E G
Sbjct: 388 GFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDA 447
Query: 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389
+ + V +K G+V +F G PTVV Y LI+ K +A
Sbjct: 448 PIAIYHTMMDGYTMVAD--EKKGLV--VFKRLKECGFTPTVVTYGCLINLYTKVGKISKA 503
Query: 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
L V M+ +L Y ++I FV L D + A F + + G P +Y ++I
Sbjct: 504 LEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISA 563
Query: 450 FMASGRLAKCRDVCKEAE 467
F G + + KE +
Sbjct: 564 FCGMGNMDRAIQTVKEMQ 581
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 293 GRMLDPS--IYAKLI--LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
R + P+ IY LI +G++ D+ + + + E G L T + VG
Sbjct: 337 ARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSL------VTYSVIVG-GF 389
Query: 349 QKFGVVESLFHWFTHSGRDPTVV---MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405
K G E+ +WF + R + +Y +I++ A +V ME +
Sbjct: 390 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPI 449
Query: 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
Y ++ + + D + + F +LKE GF PT Y +I ++ G+++K +V +
Sbjct: 450 AIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRV 509
Query: 466 AEMAGFKLDKQT 477
+ G K + +T
Sbjct: 510 MKEEGVKHNLKT 521
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F G PTV + LI+ + +++ +A+ ++ M + + Y +++ +
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 670
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
++ D +A YF++L+ G Y +++ SGR+ V K EM+ + +
Sbjct: 671 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK--EMSARNIPRN 728
Query: 477 TVVELLQIEKESRIGTI 493
+ V + I+ +R G +
Sbjct: 729 SFVYNILIDGWARRGDV 745
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363
L ++GK K + V ++ E G + +L +K+ F V E +
Sbjct: 493 LYTKVGK-ISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VK 547
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV---VIKLFVALND 420
G P V++Y +I + A+ V M+ L P R +I + D
Sbjct: 548 EGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK---LRHRPTTRTFMPIIHGYAKSGD 604
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480
+ R++ F ++ G PT + +I + ++ K ++ E +AG ++ T +
Sbjct: 605 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 664
Query: 481 LLQ 483
++Q
Sbjct: 665 IMQ 667
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P + YT+ I + A + MEA ++ Y +IK + + +A
Sbjct: 759 GVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKA 818
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR------DVCKEAEMAGFKLDKQTV 478
+ + ++K G P +Y ++ ++ +A+ +CKE AG +D T
Sbjct: 819 LSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTA 878
Query: 479 V 479
V
Sbjct: 879 V 879
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 12/221 (5%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDE 324
A F K G +A L + G LD LI ++GK D ++ TL+
Sbjct: 481 AIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKM 540
Query: 325 --LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382
L LN+ + KV L G + L G P+VV YTTL+ +
Sbjct: 541 RILTTPHSLNVILDMLSKGCKVKEELAMLGKINKL-------GLVPSVVTYTTLVDGLIR 593
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ ++ M+ S CL ++ Y ++I + A + S ++++G P +
Sbjct: 594 SGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
Y M++ ++ +G+L + + + G++L+ + LLQ
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQ 694
>sp|Q8L6Y7|PP193_ARATH Pentatricopeptide repeat-containing protein At2g38420,
mitochondrial OS=Arabidopsis thaliana GN=At2g38420 PE=2
SV=2
Length = 453
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 91/206 (44%), Gaps = 10/206 (4%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ- 335
G + A +L+ ++DP +Y++L+ + K+ D + D +G +DL ++
Sbjct: 193 GEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDS-----SCFDVIGYLEDLRKTRF 247
Query: 336 ----QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
+D T +M+ + + V S+ + +P +V YT ++ ++++ +A
Sbjct: 248 SPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADEDYPKADK 307
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ + D+ Y V I NDI A++ S + + G P Y +I+ +
Sbjct: 308 LFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYNILIKALV 367
Query: 452 ASGRLAKCRDVCKEAEMAGFKLDKQT 477
+G L++ + + KE E G + T
Sbjct: 368 KAGDLSRAKTLWKEMETNGVNRNSHT 393
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P +V +T LI + + K REA+ +V + + D Y ++K F L+ S A+
Sbjct: 228 PDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGV 287
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ K+KE G P Y +I +GR+ + R K AG++ D T L+
Sbjct: 288 YKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMN 343
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 348 LQKFGVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404
L K G VE + +G +P YT+L++ + + AL+++ MEA C +
Sbjct: 310 LSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPN 369
Query: 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462
Y ++ + + + + +K +G + Y ++R + SG++A+ +V
Sbjct: 370 DCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEV 427
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T +M V I + +++F +G P+++ YTTL+ + +K+ ++V +E
Sbjct: 49 TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
S D + VI F ++ A++ K+KE G PT Y +I+ + +G+
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGK 165
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
TL + G + D+ + + + + Q G++ES+ G P +V Y +L+
Sbjct: 618 AFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI----REDGLSPDLVTYNSLM 673
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
+ +C +A ++ +E S DL +Y VIK F + A+R S++ E G
Sbjct: 674 DMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIR 733
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDV 462
P Y + + A G A+ DV
Sbjct: 734 PCIFTYNTFVSGYTAMGMFAEIEDV 758
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 12/230 (5%)
Query: 257 FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYM 316
F VL A A+ G L+ A + K G Y L+ GK Y
Sbjct: 279 FDEFTCSTVLSACARE----GLLREAKEFFAELKSCGYEPGTVTYNALLQVFGK-AGVYT 333
Query: 317 LVMTLLDELGQRD---DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
+++L E+ + D + A ++ G + GV+E + T G P + Y
Sbjct: 334 EALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM----TKKGVMPNAITY 389
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
TT+I + K EAL + ++M+ + C+ + Y V+ L + + I+ +K
Sbjct: 390 TTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKS 449
Query: 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G P + M+ + G V +E + GF+ D+ T L+
Sbjct: 450 NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLIS 499
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 16/254 (6%)
Query: 213 ERALQTFCW---AQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL--------A 261
ERA+ F W + L D +++ V +L R + V KL + + L A
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRA 212
Query: 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTL 321
+L A + + G + A L K+ G Y ++ GK + ++ +
Sbjct: 213 YTTILHA----YSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 268
Query: 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381
LDE+ + L + C+ ++ R + F G +P V Y L+
Sbjct: 269 LDEM-RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 382 SEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441
EAL+V+ ME ++C D Y ++ +V A + + G P
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAI 387
Query: 442 IYRDMIRIFMASGR 455
Y +I + +G+
Sbjct: 388 TYTTVIDAYGKAGK 401
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR-LAKCR 460
L D+ AY ++ + +AI F ++KE G PT Y ++ +F GR K
Sbjct: 207 LLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKIL 266
Query: 461 DVCKEAEMAGFKLDKQTVVELLQ 483
V E G K D+ T +L
Sbjct: 267 GVLDEMRSKGLKFDEFTCSTVLS 289
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 11/182 (6%)
Query: 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES---LFHWFTHSGRDPTV 370
K+ L + D ++ D S D + + + L K G V S +F+ G V
Sbjct: 150 KFDLALRAFDWFMKQKDYQ-SMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDV 208
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL----NDISRAIR 426
YT+LI + + + REA+ V ME C L Y V++ +F + N I+ +
Sbjct: 209 YSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVE 268
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486
K+K G P Y +I + V +E + AGF DK T LL +
Sbjct: 269 ---KMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 487 ES 488
+S
Sbjct: 326 KS 327
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P V YTTL+ K A+++ M + C ++ + IK++ +
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 438
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
++ F ++ G P + ++ +F +G ++ V KE + AGF +++T L I
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL--I 496
Query: 485 EKESRIGTI 493
SR G+
Sbjct: 497 SAYSRCGSF 505
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 4/202 (1%)
Query: 272 GFVKGGNLKL-AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
GF K +L L A+ M KD MLD S+ A +I LGK + + + L Q D
Sbjct: 146 GFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKE-GRVSSAANMFNGL-QEDG 203
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+L T+++ ++ ++F G PT++ Y +++ +
Sbjct: 204 FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKI 263
Query: 391 T-VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449
T +V M++ D Y +I + A + F ++K AGF Y ++ +
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV 323
Query: 450 FMASGRLAKCRDVCKEAEMAGF 471
+ S R + V E + GF
Sbjct: 324 YGKSHRPKEAMKVLNEMVLNGF 345
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P++V Y +LI + + EA+ + M D+ Y ++ F +
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A+ F +++ AG P + I+++ G+ + + E + G D T LL
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462
Query: 484 I 484
+
Sbjct: 463 V 463
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380
+LD + +R S ++M + R FG E + G P ++ Y T+I++
Sbjct: 651 VLDYMKERG-FTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAY 709
Query: 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY 440
+ R+A + M S + D+ Y I + A + AI + + G P
Sbjct: 710 CRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769
Query: 441 DIYRDMI 447
+ Y ++
Sbjct: 770 NTYNSIV 776
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G +PTV ++TTLI E + AL+++ M++S+ D+ Y V I F
Sbjct: 189 TLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+ + A ++F +++ G P Y MI + + RL
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRL 289
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+++ V R + F ++ + + +G P+V ++ + K RE VV M
Sbjct: 102 NSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRK 161
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
AY +I F A+N + F +++E G+ PT ++ +IR F GR+
Sbjct: 162 FKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDS 221
Query: 459 CRDVCKEAEMAGFKLDKQTVVELLQIEKESRIGTI 493
+ EM LD V+ + I+ ++G +
Sbjct: 222 ALSLLD--EMKSSSLDADIVLYNVCIDSFGKVGKV 254
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P Y+ LIH + E + ++M+ C+ D AY +VI F +++A +
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
++K GF PT Y +I RL + + +EA+ +L+ V+ I+
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN--VVIYSSLIDGF 667
Query: 488 SRIGTI 493
++G I
Sbjct: 668 GKVGRI 673
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 3/208 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
+GF K G + A LL K D +Y I GK K + E+ + +
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGK-VGKVDMAWKFFHEI-EANG 268
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
L + T+++ V + + +F + R P Y T+I S K EA
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+++ A + + AY ++ + + A++ F ++K+ P Y +I +
Sbjct: 329 SLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDML 387
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTV 478
+G+L ++ + AG + +TV
Sbjct: 388 CRAGKLDTAFELRDSMQKAGLFPNVRTV 415
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS +EA+ V M+ + C D
Sbjct: 371 RAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRV 430
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL-AKCRDVCKE 465
Y +I + + A+ + +++EAG P Y +I +G L A R C
Sbjct: 431 TYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFC-- 488
Query: 466 AEMAG 470
EM G
Sbjct: 489 -EMVG 492
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/216 (18%), Positives = 87/216 (40%), Gaps = 2/216 (0%)
Query: 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL 333
K G L +A + ++ G D Y+ +I LGK + +GQ NL
Sbjct: 440 AKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNL 499
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ ++ + + + + L+ ++G P V Y+ ++ EA V
Sbjct: 500 VTFNI--MIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVF 557
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
M+ N + D P Y +++ L+ ++ +A +++ + +AG P ++ F+
Sbjct: 558 AEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRV 617
Query: 454 GRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKESR 489
R+++ ++ + G QT LL ++R
Sbjct: 618 HRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDAR 653
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 15/286 (5%)
Query: 213 ERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE-LKVPFKLENFVS-LASKGVLEATA 270
+ AL F WA+KQP P D + L + + + + E V +S G L A
Sbjct: 186 DAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNA 245
Query: 271 KGFV-----KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL 325
V K L++A+ A++ G +D Y L++ L N + + +
Sbjct: 246 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMM-LFLNKGLPYKAFEIYESM 304
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR---DPTVVMYTTLIHSRLS 382
+ D L D + + L K G +++ F F P+ ++++L+ S
Sbjct: 305 EKTDSL----LDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGK 360
Query: 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442
+ ++ V M+ + +I + + A+R + ++K++GF P + +
Sbjct: 361 AGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGL 420
Query: 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
Y +I SG+L V K+ E AGF T LL++ S
Sbjct: 421 YTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGS 466
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 12/226 (5%)
Query: 254 LENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILELGKN 311
+E SL E K G L A+KL K+ R L PS +++ L+ +GK
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKE--RKLRPSFSVFSSLVDSMGKA 361
Query: 312 P--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369
D M V + G R + + K G K L+ SG P
Sbjct: 362 GRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAG----KLDTALRLWDEMKKSGFRPN 417
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
+YT +I S K A+TV +ME + L Y ++++ + A++ ++
Sbjct: 418 FGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYN 477
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD-VCKEAEMAGFKLD 474
+ AG P Y ++ + +A+ RL + E + G+ +D
Sbjct: 478 SMTNAGLRPGLSSYISLLTL-LANKRLVDVAGKILLEMKAMGYSVD 522
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF SG V + T+IH+ + EA +++ ME D Y +++ L
Sbjct: 326 NLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLH 385
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475
DI A+ Y+ K+++ G P +R ++ I +A+ V E + ++D+
Sbjct: 386 ADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDE 445
Query: 476 QTVVELLQI 484
+V ++Q+
Sbjct: 446 HSVPVIMQM 454
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 352 GVVESLFHWF---THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
G+VE +F G ++ T+LI + EA V M+ S D+ A
Sbjct: 634 GMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAAS 693
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
++ L L +S A F+ L+E G C + M+ ++ G L + +V +E
Sbjct: 694 NSMLSLCADLGIVSEAESIFNALREKGTCDVIS-FATMMYLYKGMGMLDEAIEVAEEMRE 752
Query: 469 AGFKLD 474
+G D
Sbjct: 753 SGLLSD 758
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
SLF G DP + +Y LIH EA+ ++ ME+ N D+ Y ++I
Sbjct: 325 SLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGL 384
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
+ ++ A R F K+K P+ Y +I + + + D+C E +G
Sbjct: 385 CIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASG 439
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%)
Query: 362 THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421
T SG +P ++ ++TLI + + + A+ + + M + D+ Y +I ++
Sbjct: 436 TASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANM 495
Query: 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
A+R +S + EAG P + ++ F GRL+ D +E
Sbjct: 496 KEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQE 539
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/336 (19%), Positives = 130/336 (38%), Gaps = 45/336 (13%)
Query: 149 LASSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGH 208
+A +I K + +P ++ A D GL ++V E D RF G L++
Sbjct: 68 VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVE--DVLNRFRNAGLLTY------- 118
Query: 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEA 268
+ F W++KQ H R +E A+ + K+ + L N ++ K +L
Sbjct: 119 --------RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLIN--AMRKKKMLNV 168
Query: 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328
+ ++M + +D +IYA ++E P + LL L +
Sbjct: 169 E------------TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKS 216
Query: 329 DDLNLSQQDCTAI--------MKVGIRLQKFG------VVESLFHWFTHSGRDPTVVMYT 374
++ +Q+ + I L+ +G +F +G P +V Y+
Sbjct: 217 KNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYS 276
Query: 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434
++ + EAL +V +M+ S C Y V++ + N + A+ F +++ +
Sbjct: 277 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 336
Query: 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470
G ++ +I F + R+ V KE + G
Sbjct: 337 GMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKG 372
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 256 NFVSLASKGVLEATAKGFV--------------KGGNLKLAWKLLMVAKDGGRMLDPSIY 301
+ + LA K E A G V G + A+ ++ G + D S Y
Sbjct: 427 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 486
Query: 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361
+K +L N K L L +E+ +R L T ++ K G++E WF
Sbjct: 487 SK-VLNYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMVD---SFCKAGLIEQARKWF 541
Query: 362 TH---SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418
G P VV YT LIH+ L KK A + M + CL ++ Y +I
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601
Query: 419 NDISRAIRYFSKLKEAGFCPTYDIY 443
+ +A + F ++ + P D+Y
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMY 626
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRY 427
P VV+YT +I K EA ++ ME C ++ Y +I F + I +
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 428 FSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465
++ G P Y YR +I +G L ++ +E
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 839
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 100/269 (37%), Gaps = 13/269 (4%)
Query: 192 RFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVP 251
+F K S S + L + P + F WA +Q + + V+++ R + KVP
Sbjct: 125 QFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVP 184
Query: 252 FKLENFVSLASKGV----LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307
+ + K V L + + G+ +A + L KD S Y LI
Sbjct: 185 EEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQA 244
Query: 308 LGKNP--DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365
K D L+ + R D + ++ KVG + +VE+
Sbjct: 245 FLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVET-------EN 297
Query: 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425
P V YT LI EA+ + M A++CL ++ Y ++ + + R
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCK 357
Query: 426 RYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
R + + G P+ I+ ++ + SG
Sbjct: 358 RVLNMMMMEGCYPSPKIFNSLVHAYCTSG 386
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 33/330 (10%)
Query: 126 PLPLPLPHRLRPLEL-PTPKKRVCLASSRASICKQVYKNPSFL----ISLARDIKGLDSH 180
P L HR+R L + P+PK +A AS K FL +D+ ++
Sbjct: 108 PTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTI 167
Query: 181 KDV---AEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAS 237
DV ++ ++K R F+V + + + L +C ++ P
Sbjct: 168 LDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVI----LNGWCLIKRTP----------K 213
Query: 238 TVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD 297
+EVL E + L + ++ KGF + G ++ AW+ + K +D
Sbjct: 214 ALEVLKEMVERGINPNLTTYNTML---------KGFFRAGQIRHAWEFFLEMKKRDCEID 264
Query: 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357
Y ++ G + + DE+ R+ + S A+++V + +
Sbjct: 265 VVTYTTVVHGFGV-AGEIKRARNVFDEM-IREGVLPSVATYNAMIQVLCKKDNVENAVVM 322
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G +P V Y LI + ++ ME C + Y ++I+ +
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+++ +A+ F K+ P D Y +I
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILI 412
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429
VV YTT++H + + A V M L + Y +I++ +++ A+ F
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 324
Query: 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487
++ G+ P Y +IR +G ++ ++ + E G + + QT +++ E
Sbjct: 325 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 88/249 (35%), Gaps = 35/249 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-------------------LEL 308
G+ + G L WKL+ V K G + IY +I +
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQ---------------DCTAIMKVGIRLQKFGV 353
G PD ++ TL+D +R D+ + + TAI+ ++
Sbjct: 346 GILPDT-VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 404
Query: 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413
LFH G +P V +T LI+ ++A V +M + C ++ Y +I
Sbjct: 405 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 464
Query: 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473
D+ A ++ + G P Y ++ SG + + + E E AG
Sbjct: 465 GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 524
Query: 474 DKQTVVELL 482
D T L+
Sbjct: 525 DTVTYTTLM 533
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 8/183 (4%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNL 333
G +K A LL++ + G D Y+ ++ G+ + L+ E+ +R L
Sbjct: 260 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI-----EVMKRKGLKP 314
Query: 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393
+ +I+ + R+ K E F G P V+YTTLI R A
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Query: 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453
+ M + + D+ Y +I F + D+ A + F ++ G P + ++I + +
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434
Query: 454 GRL 456
G +
Sbjct: 435 GHM 437
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 32/224 (14%)
Query: 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327
+ G K GN++ A KL+ + G D Y TL+D +
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT-----------------TLMDAYCK 538
Query: 328 RDDLNLSQQDCTAIMKVGIR--LQKFGVV-------------ESLFHWFTHSGRDPTVVM 372
+++ +Q+ ++ G++ + F V+ E L +W G P
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432
+ +L+ + A + +M + D Y ++K ++ A F ++K
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 433 EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
GF + Y +I+ F+ + + R+V + G DK+
Sbjct: 659 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKE 702
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 96/261 (36%), Gaps = 22/261 (8%)
Query: 224 KQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA------KGFVKGG 277
K+ L P+ + S + +L R K+ E F + +G+L T GF K G
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRI--CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365
Query: 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLI---LELGKNPDKYMLVMTLLDELGQRDDLNLS 334
+++ A K D Y +I ++G + L + + + D + +
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE---KKCREALT 391
+ K G F V + +G P VV YTTLI E E L
Sbjct: 426 EL-INGYCKAGHMKDAFRVHNHMIQ----AGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+W + +F Y ++ +I A++ + + AG Y ++ +
Sbjct: 481 EMWKIGLQPNIF---TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 537
Query: 452 ASGRLAKCRDVCKEAEMAGFK 472
SG + K +++ KE G +
Sbjct: 538 KSGEMDKAQEILKEMLGKGLQ 558
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
S+F+ G P+++ YTTL+ + +K L+++ +E + D + +I
Sbjct: 340 SIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS 399
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
++ +A++ F K+KE+G PT + +I+ + G+L
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKL 440
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 12/213 (5%)
Query: 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDKYMLVMTLLDELGQRDDLN 332
GNL A K+ K+ G S + LI GK +L M L DE+ Q +D
Sbjct: 403 GNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND-- 460
Query: 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI--HSRLSEKKCREAL 390
+ C +++ +K ++ + G P VV + TL ++R+ C
Sbjct: 461 ---RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGST-CTAED 516
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
++ M + ++ ++ + + A+R+F ++KE G P ++ +I+ F
Sbjct: 517 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
+ + +V E G K D T L+
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/306 (18%), Positives = 112/306 (36%), Gaps = 18/306 (5%)
Query: 179 SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST 238
SH+DV + L KC + + + +R N +A F WA Q +
Sbjct: 115 SHEDVVKELSKCDVVVTESLVLQVLRRFS--NGWNQAYGFFIWANSQTGYVHSGHTYNAM 172
Query: 239 VEVLARHHELKVPFKLENFVS------LASKGVLEATAKGFVKGGNL-KLAWKLLMVAKD 291
V+VL + + ++L N ++ L + + + K G K L + K
Sbjct: 173 VDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKS 232
Query: 292 GGRMLDPSIYAKLILELGKNPD---KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348
G D L+ L K + + + L D + + ++ +
Sbjct: 233 YGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKP------DARTFNILIHGFCKA 286
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
+KF ++ + P VV YT+ + + E R ++ M + C ++ Y
Sbjct: 287 RKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTY 346
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
+V+ ++ A+ + K+KE G P Y +I I +GR ++ ++
Sbjct: 347 TIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTN 406
Query: 469 AGFKLD 474
G + D
Sbjct: 407 QGVRRD 412
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 45/117 (38%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
T+ ++ + F V + +G +P VV YT ++HS K+ EAL V M+
Sbjct: 312 TSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKE 371
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455
C+ D Y +I + A F + G +Y MI + R
Sbjct: 372 DGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSR 428
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 15/186 (8%)
Query: 320 TLLDELGQRDDLNLSQQDCTAIMKVGI-------RLQKFGVVES--------LFHWFTHS 364
TL+ + D+LN +Q ++ G+ + +G E+ LF S
Sbjct: 472 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 531
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
D V Y +IH K EA + ++ D+ Y V+I F + IS A
Sbjct: 532 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
F K+K+ G P Y +IR + +G + K ++ E GF D T+ + +
Sbjct: 592 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADL 651
Query: 485 EKESRI 490
+ R+
Sbjct: 652 ITDGRL 657
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%)
Query: 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415
+LF G P V+ + TLI+ E + EA +V M D+ Y ++
Sbjct: 212 ALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGM 271
Query: 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447
+ D A+ SK++E P IY +I
Sbjct: 272 CKMGDTKSALNLLSKMEETHIKPDVVIYSAII 303
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 43/110 (39%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R ++FG + L G P V Y LIHS EA+ V M+ + C D
Sbjct: 376 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRV 435
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
Y +I + + A+ + +++ G P Y +I +G L
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHL 485
>sp|Q84VG6|PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525,
mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2
SV=2
Length = 626
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 6/213 (2%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG + +KLL + K G + +Y L+ L KN K +L+ E+ + +D
Sbjct: 190 KGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKN-GKVGRARSLMSEMKEPND 248
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ + +A +Q ++E F G P VV T ++ +E + EAL
Sbjct: 249 VTFNIL-ISAYCNEQKLIQSMVLLEKCFSL----GFVPDVVTVTKVMEVLCNEGRVSEAL 303
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
V+ +E+ D+ A ++K + AL + A R+F +++ G+ P + Y +I +
Sbjct: 304 EVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGY 363
Query: 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
G L D + + + + T L++
Sbjct: 364 CDVGMLDSALDTFNDMKTDAIRWNFATFNTLIR 396
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 116/322 (36%), Gaps = 36/322 (11%)
Query: 169 SLARDIKGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHL 228
SL + L +A LD L + +E +R+L+ F + Q+Q
Sbjct: 78 SLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWC 137
Query: 229 FPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288
P++ + + +L R L LE F + S+GV +
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKC--LEVFDEMPSQGVSRSVFS----------------- 178
Query: 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR- 347
Y LI G+N +Y + LLD + + + ++ S ++ R
Sbjct: 179 ------------YTALINAYGRN-GRYETSLELLDRM-KNEKISPSILTYNTVINACARG 224
Query: 348 -LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
L G++ LF H G P +V Y TL+ + EA V M + DL
Sbjct: 225 GLDWEGLL-GLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLT 283
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y +++ F L + + ++ G P Y ++ + SG + + V +
Sbjct: 284 TYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343
Query: 467 EMAGFKLDKQTVVELLQIEKES 488
+ AG + T LL + +S
Sbjct: 344 QAAGCTPNANTYSVLLNLFGQS 365
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 43/108 (39%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+L++ V L G P + Y L+ + +EA+ V M+A+ C +
Sbjct: 294 KLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNAN 353
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454
Y V++ LF + F ++K + P Y +I +F G
Sbjct: 354 TYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGG 401
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P V + TLIH K EA+ ++ M A C DL Y VV+ D
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A +K+++ P IY +I + ++ KE E G + + T L+
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 97/270 (35%), Gaps = 45/270 (16%)
Query: 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATA------KGFVKGGNLK 280
H FPD + ++ ++ +V +E F ++ +G++ T +G + G+
Sbjct: 391 HCFPDVVTYNTLIKGFCKYK--RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448
Query: 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340
+A ++ M+ + P M TLLD L +
Sbjct: 449 MAQEIFK------EMVSDGV-----------PPNIMTYNTLLDGLCKNG----------- 480
Query: 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400
+L+K VV F + S +PT+ Y +I K + + N+
Sbjct: 481 ------KLEKAMVV---FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
D+ AY +I F A F ++KE G P Y +IR + G
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 461 DVCKEAEMAGFKLDKQTVVELLQIEKESRI 490
++ KE GF D T+ + + + R+
Sbjct: 592 ELIKEMRSCGFAGDASTIGLVTNMLHDGRL 621
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 2/200 (1%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD 330
KG K G ++ A +L KD G + P + IL G + ++ + E
Sbjct: 292 KGLFKAGMVEDAENVLKEMKDLGFV--PDAFTFSILFDGYSSNEKAEAALGVYETAVDSG 349
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
+ ++ C+ ++ + K E + G P V+Y T+I + A
Sbjct: 350 VKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGAR 409
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ ME D AY +I+ F L ++ A + +K+K G P+ + Y +I +
Sbjct: 410 MKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGY 469
Query: 451 MASGRLAKCRDVCKEAEMAG 470
KC D+ KE E G
Sbjct: 470 GRKYEFDKCFDILKEMEDNG 489
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 55/136 (40%)
Query: 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401
++ ++L G LF+ H P+V +Y LI K+ +A + M A
Sbjct: 186 IQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRL 245
Query: 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461
L L Y +I + + ++ + ++K P+ + +++ +G + +
Sbjct: 246 LPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAEN 305
Query: 462 VCKEAEMAGFKLDKQT 477
V KE + GF D T
Sbjct: 306 VLKEMKDLGFVPDAFT 321
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
+G P VV Y TLI+ K EA V +ME + Y ++I + I
Sbjct: 488 NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIED 547
Query: 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
A R+ ++ + G Y +I +G+L++ D+ E G K D T L+
Sbjct: 548 AFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLIS 607
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%)
Query: 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409
K+ + +F SG P Y +L+ + E V +M + + + DL +
Sbjct: 320 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFS 379
Query: 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469
++ LF ++ +A+ YF+ +KEAG P IY +I+ + G ++ ++ E
Sbjct: 380 SMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ 439
Query: 470 GFKLDKQTVVELLQ 483
G +D T +L
Sbjct: 440 GCAMDVVTYNTILH 453
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408
+ FG+V+ + G P V Y +++H + + +EA V+ M D Y
Sbjct: 638 KAFGLVKKMEE--EQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695
Query: 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCP 438
+I FV+ ++++ A R ++ + GF P
Sbjct: 696 TCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 50/130 (38%)
Query: 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412
V LF G +P Y LI S S+ K EAL ++ ME S C + Y +I
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477
Query: 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472
F N A F +++ G Y +I S R+ + + M G K
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537
Query: 473 LDKQTVVELL 482
DK T LL
Sbjct: 538 PDKYTYNSLL 547
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 146/392 (37%), Gaps = 81/392 (20%)
Query: 101 EELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLASSRAS----- 155
EE+ +LF I YR+ +PLPH ++ L+ + SS S
Sbjct: 49 EEVRFSGALFSRMIHSSTYHPYRQ----IPLPHSVQLLDASLGCRGFSSGSSNVSDGCDE 104
Query: 156 --------------ICKQVYKNPSFLISLARDIKGLDS-HKDVAEVLDKCGRFLRKGSLS 200
C + NP + + + I L + +++ VLD+ L +
Sbjct: 105 EVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIV 164
Query: 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL 260
+ H P A + FCWA ++ D R S + +LA+ + E VS+
Sbjct: 165 EVLERFRHARKP--AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF------ETMVSV 216
Query: 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT 320
+ E KG + +A K AK+ + + I EL K + V T
Sbjct: 217 ----LEEMGTKGLLTMETFTIAMKAFAAAKERKKAVG-------IFELMKKYKFKIGVET 265
Query: 321 ---LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
LLD LG+ K+G Q + + L FT P ++ YT L+
Sbjct: 266 INCLLDSLGR--------------AKLGKEAQV--LFDKLKERFT-----PNMMTYTVLL 304
Query: 378 HSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436
+ + EA +WN + L D+ A+ V+++ + S AI+ F +K G
Sbjct: 305 NGWCRVRNLIEA-ARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 363
Query: 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468
CP Y MI RD CK++ M
Sbjct: 364 CPNVRSYTIMI------------RDFCKQSSM 383
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 6/260 (2%)
Query: 195 RKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL 254
R+ S+ F V L N +R+L W ++ P + + R + + L
Sbjct: 118 RQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGL 177
Query: 255 ENFV---SLASKGVLEAT-AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310
+ + +LA +T F K G A L + D +Y+ LI EL +
Sbjct: 178 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLI-ELSR 236
Query: 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370
Y +++ L +R + +++ V + + F L +G P
Sbjct: 237 RLCDYSKAISIFSRL-KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNT 295
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
V Y+TL+ + K EAL+V M+ NC DL ++I ++ L+ + A R F
Sbjct: 296 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWS 355
Query: 431 LKEAGFCPTYDIYRDMIRIF 450
L++ P Y ++R++
Sbjct: 356 LRKMDIEPNVVSYNTILRVY 375
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 12/186 (6%)
Query: 298 PSIYA-KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356
PS++A ++L ++ + L DE+ QR T I G K G+ +S
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFG----KEGMFDS 208
Query: 357 LFHWFTHSGRDPT---VVMYTTLIHSRLSEKKC--REALTVVWNMEASNCLFDLPAYRVV 411
W +D +V+Y+ LI LS + C +A+++ ++ S DL AY +
Sbjct: 209 ALSWLQKMEQDRVSGDLVLYSNLIE--LSRRLCDYSKAISIFSRLKRSGITPDLVAYNSM 266
Query: 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
I ++ A ++ EAG P Y ++ +++ + + + V E +
Sbjct: 267 INVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNC 326
Query: 472 KLDKQT 477
LD T
Sbjct: 327 ALDLTT 332
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/199 (17%), Positives = 87/199 (43%), Gaps = 4/199 (2%)
Query: 284 KLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343
+LL+ + +L ++ +L + K++ +++ E+ + + L C ++
Sbjct: 280 RLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVN-CALDLTTCNIMID 338
Query: 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403
V +L + LF +P VV Y T++ + EA+ + M+ +
Sbjct: 339 VYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQ 398
Query: 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463
++ Y +IK++ + +A +++ G P Y +I I+ +G+L + +
Sbjct: 399 NVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLF 458
Query: 464 KEAEMAGFKLDK---QTVV 479
++ +G ++D+ QT++
Sbjct: 459 QKLRSSGVEIDQVLYQTMI 477
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417
F G PT V + T+IH + + E +++ M+ +C D Y ++I L
Sbjct: 321 FKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKL-HCAPDTRTYNILISLHTK 379
Query: 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477
NDI RA YF ++K+ G P YR ++ F + + + E + ++D+ T
Sbjct: 380 NNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYT 439
Query: 478 VVELLQIEKESRI 490
L ++ E+ +
Sbjct: 440 QSALTRMYVEAEM 452
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
+G + Y +I S + + A V M N D+ Y V+I F ++
Sbjct: 568 ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQ 627
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456
+A+ Y +KEAG IY +I+++ G L
Sbjct: 628 QAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYL 661
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Query: 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428
TV+ Y +I + K C +A + +M + D Y ++++ + + + Y
Sbjct: 504 TVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYL 563
Query: 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488
K++E G+ Y +I F+ G+L +V K EM + ++ VV + I +
Sbjct: 564 EKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYK--EMVEYNIEPDVVVYGVLINAFA 621
Query: 489 RIGTI 493
G +
Sbjct: 622 DTGNV 626
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-----ELGKNPDKYMLVMTLLDEL 325
+G+ + G + A K+ K G ++P++Y I+ G+ + + +LD
Sbjct: 263 RGWCRAGEISEAEKVFKEMKLAG--IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSG 320
Query: 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385
+ + + +M+V ++ + V +++ G +P + Y LI + ++
Sbjct: 321 CAPNAITFNN-----LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRD 445
A+ V+ M C + + + + D++ A R +SK+ EA P Y
Sbjct: 376 LENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNI 435
Query: 446 MIRIFMAS 453
++R+F+ S
Sbjct: 436 LMRMFVGS 443
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426
+P V++YT L+ + EA V M+ + ++ Y +VI ISRA
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHD 311
Query: 427 YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483
F+ + ++G P + +++R+ + +GR K V + + G + D T L++
Sbjct: 312 VFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIE 368
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
++++F + L + ++ +T LI + EA+ ME C+ D
Sbjct: 163 KVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKI 222
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
A+ +VI S A +F LK+ F P +Y +++R + +G +++ V KE
Sbjct: 223 AFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281
Query: 467 EMAGFK 472
++AG +
Sbjct: 282 KLAGIE 287
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G P VV Y TL+ S +A++V +ME C ++ Y +I F + A
Sbjct: 347 GLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGA 406
Query: 425 IRYFSKLKEAGFCPTYDIYRDMI 447
+ ++K+ +G CP +Y +M+
Sbjct: 407 VYIWNKMLTSGCCPNVVVYTNMV 429
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423
SG P VV+YT ++ + K +EA +++ M NC +P + IK +
Sbjct: 416 SGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDW 475
Query: 424 AIRYFSKLKEAGFCPTYDI-YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482
A + F ++++ CP + Y +++ + R+ + + +E M G + T LL
Sbjct: 476 AEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLL 535
Query: 483 Q 483
Sbjct: 536 H 536
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 48/111 (43%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F+ G DP+V +Y ++ + L E + + V +M+ ++ Y V++K
Sbjct: 133 MFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 192
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467
N + A + ++ G CP Y +I G + + R++ + E
Sbjct: 193 KNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFE 243
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 282 AWKLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCT 339
WK+ G + + +Y L+ K +P+K +++ ++E G D+ +
Sbjct: 187 VWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLIS 246
Query: 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399
K + + V + + SG P +V Y + IH E + REA T ++
Sbjct: 247 VYCKKSMHFEALSVQDRM----ERSGVAPNIVTYNSFIHGFSREGRMREA-TRLFREIKD 301
Query: 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
+ + Y +I + +NDI A+R ++ GF P Y ++R GR+ +
Sbjct: 302 DVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREA 361
Query: 460 RDVCKEAEMAGFKLD 474
+ EM+G K++
Sbjct: 362 NRLL--TEMSGKKIE 374
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 350 KFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
K G VE + + +G DP YT+LI K A V M C +
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEV 289
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
AY +I I A+ F K+K+ PT Y +I+ S R ++ ++ KE
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEM 349
Query: 467 EMAGFKLDKQTVVELL 482
E G K + T L+
Sbjct: 350 EETGIKPNIHTYTVLI 365
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 16/206 (7%)
Query: 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352
G + + + Y I+E G +PD + +L+ QR DL+ + + + G R +
Sbjct: 232 GNVEEANQYVSKIVEAGLDPD-FFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 353 V------------VESLFHWFTHSGRD---PTVVMYTTLIHSRLSEKKCREALTVVWNME 397
++ F D PTV YT LI S ++ EAL +V ME
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350
Query: 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457
+ ++ Y V+I + +A ++ E G P Y +I + G +
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 458 KCRDVCKEAEMAGFKLDKQTVVELLQ 483
DV + E + +T EL++
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIK 436
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
LF G +P VVMYT LI K EA ++ M + NCL + + +I
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
A + A K+ + G PT +I + G ++ +G K D
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 477 TVVELLQ 483
T +Q
Sbjct: 639 TYTTFIQ 645
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%)
Query: 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424
G PTV T LIH L + A + M +S D Y I+ + + A
Sbjct: 597 GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDA 656
Query: 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484
+K++E G P Y +I+ + G+ DV K G + + T + L++
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKH 716
Query: 485 EKESRIG 491
E + G
Sbjct: 717 LLEMKYG 723
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 53/257 (20%)
Query: 215 ALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFV 274
A + FCWA ++ D R S + +LA+ + E VS+ + E KG +
Sbjct: 178 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF------ETMVSV----LEEMGTKGLL 227
Query: 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT---LLDELGQRDDL 331
+A K AK+ + + I EL K + V T LLD LG+
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVG-------IFELMKKYKFKIGVETINCLLDSLGR---- 276
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
K+G Q + + L FT P ++ YT L++ + EA
Sbjct: 277 ----------AKLGKEAQV--LFDKLKERFT-----PNMMTYTVLLNGWCRVRNLIEAAR 319
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
+ +M D+ A+ V+++ + S AI+ F +K G CP Y MI
Sbjct: 320 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMI---- 375
Query: 452 ASGRLAKCRDVCKEAEM 468
RD CK++ M
Sbjct: 376 --------RDFCKQSSM 384
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 20/222 (9%)
Query: 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324
V GF + G+ A K L + G LD + Y +I L N K ++++
Sbjct: 270 VYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNG-KLKEATEIVED 328
Query: 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK 384
+ ++ DL T +M + + +++H G +P VV +T+I
Sbjct: 329 M-EKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNG 387
Query: 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444
+ EA+ V + +E +N + Y V+I D R FSK+ EAG P +Y
Sbjct: 388 QLHEAI-VYFCIEKANDVM----YTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYT 442
Query: 445 DMIRIFMASGRLAKCRDVCKEAEMA-GFKLDKQTVVELLQIE 485
I +CK+ + FKL + V E L ++
Sbjct: 443 SWI------------AGLCKQGNLVDAFKLKTRMVQEGLLLD 472
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 6/186 (3%)
Query: 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRDD 330
F K G L+LA K K L P++ + LI K D + V +L E+ +R
Sbjct: 173 FCKSGELQLALKSFHSMKRDA--LSPNVVTFTCLIDGYCKAGDLEVAV-SLYKEM-RRVR 228
Query: 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390
++L+ TA++ + + E ++ +P ++YTT+I A+
Sbjct: 229 MSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAM 288
Query: 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450
+ M D+ AY V+I + A ++++ P I+ M+ +
Sbjct: 289 KFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAY 348
Query: 451 MASGRL 456
SGR+
Sbjct: 349 FKSGRM 354
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 77/203 (37%), Gaps = 38/203 (18%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI------LELGKNPDKY---------- 315
G+ K G+L++A L + L+ Y LI E+ + + Y
Sbjct: 207 GYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEP 266
Query: 316 --MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373
++ T++D QR D + + + ++ G+RL + Y
Sbjct: 267 NSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLD--------------------ITAY 306
Query: 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433
+I K +EA +V +ME S+ + D+ + ++ + + A+ + KL E
Sbjct: 307 GVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIE 366
Query: 434 AGFCPTYDIYRDMIRIFMASGRL 456
GF P MI +G+L
Sbjct: 367 RGFEPDVVALSTMIDGIAKNGQL 389
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV-----WNMEASNCLFDLP 406
GV+E L H G P V+ ++ +I+ K+ ++A W +E +
Sbjct: 481 GVLEKLL---VH-GFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEI----- 531
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
Y ++I+ + D R+++ F+K+KE G P Y I+ F ++ K ++ K
Sbjct: 532 TYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTM 591
Query: 467 EMAGFKLDKQTVVELLQIEKES 488
G K D T L++ ES
Sbjct: 592 LRIGLKPDNFTYSTLIKALSES 613
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 1/141 (0%)
Query: 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375
+L M LL E+ + C I G RL +F + G P+ +Y
Sbjct: 127 LLSMELLKEIRDSGYRISDELMCVLIGSWG-RLGLAKYCNDVFAQISFLGMKPSTRLYNA 185
Query: 376 LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435
+I + + A M + C D Y ++I + AIR ++++ G
Sbjct: 186 VIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEG 245
Query: 436 FCPTYDIYRDMIRIFMASGRL 456
P Y +I F+ +GR+
Sbjct: 246 NRPNVFTYTILIDGFLIAGRV 266
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
+F S + + +Y +IH + K +A + ++ D+ Y ++I
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLC 538
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476
+S A F K++E G P Y +IR + G K + +E + GF +D
Sbjct: 539 KKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAS 598
Query: 477 TVVELLQIEKESRI 490
TV ++ + + R+
Sbjct: 599 TVKMVVDMLSDGRL 612
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
R +K + S G +P V ++TLI+ E + EAL +V M L
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLI 178
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
++ +S A+ ++ E GF P Y ++++ SG+ A ++ ++
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238
Query: 467 EMAGFKLD 474
E KLD
Sbjct: 239 EERKIKLD 246
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%)
Query: 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416
L+H T G P++ +TTL+ R+A+ + M N + Y V+I+ +
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553
Query: 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460
D+S+A + ++ E G P YR +I +G+ ++ +
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAK 597
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+A++ ++ + FG+ LF+ G P V +YT +I S K A ++ +MEA
Sbjct: 196 SALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEA 255
Query: 399 SNCLFDLPAYRVVI 412
+ C ++ Y V+I
Sbjct: 256 TGCDVNIVPYNVLI 269
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 2/154 (1%)
Query: 320 TLLDELGQRDD--LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377
T L LG+ D L LS +++ + E + +PTVV YT+L+
Sbjct: 420 TALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLM 479
Query: 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437
S+ K +AL + M + + ++ I A++ F+++ E
Sbjct: 480 GGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVK 539
Query: 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471
P Y MI + G ++K + KE G
Sbjct: 540 PNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGI 573
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%)
Query: 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430
+ YT L+H E K EAL+V M DL Y V+I + D +
Sbjct: 613 ICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKE 672
Query: 431 LKEAGFCPTYDIYRDMI 447
+ + G P IY MI
Sbjct: 673 MHDRGLKPDDVIYTSMI 689
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%)
Query: 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398
+A++ ++ K + LF DP +V Y++LI+ + EA + M +
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS 323
Query: 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
CL D+ +Y +I F + ++ F ++ + G Y +I+ F +G + K
Sbjct: 324 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 383
Query: 459 CRDVCKEAEMAGFKLDKQTVVELL 482
++ + + G D T LL
Sbjct: 384 AQEFFSQMDFFGISPDIWTYNILL 407
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Query: 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406
+L++ + LF G P + Y LI S + EA+ + +E S+C D+
Sbjct: 454 KLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDII 513
Query: 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466
+Y +I D+ A F +++E G P Y ++ F + R+ + +E
Sbjct: 514 SYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Query: 467 EMAGFKLDKQTVVELLQ-IEKESR 489
+ G + + T LL +EK R
Sbjct: 574 LVKGCQPNIVTYNILLDCLEKNGR 597
Score = 38.9 bits (89), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 363 HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422
H RD YT +I + KC EA+ + M ++ Y ++++ +
Sbjct: 265 HCRRDEYT--YTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVD 322
Query: 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458
+AI+ FS++ E G P Y ++ + +A G+L +
Sbjct: 323 KAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVR 358
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 3/212 (1%)
Query: 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331
G+ G + A+ LL + G + + Y LI L K D+ M + E+ +R +
Sbjct: 296 GYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCK-VDRMEEAMKVFVEM-ERYEC 353
Query: 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391
TA++ + K + G P+ + Y ++ + ++ E L
Sbjct: 354 EADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLE 413
Query: 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451
++ M D+ Y VVI+L L ++ A+R +++++E G P D + MI
Sbjct: 414 LMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLA 473
Query: 452 ASGRLAKCRDVCKEAEMAG-FKLDKQTVVELL 482
+ G L + D KE G F + + ++LL
Sbjct: 474 SQGCLLEASDHFKEMVTRGLFSVSQYGTLKLL 505
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 113/279 (40%), Gaps = 12/279 (4%)
Query: 187 LDKCGRFLRKGSLSFTVRELGHM-NLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARH 245
L++ G LR G + + G NL R F WA KQP + S V++L++
Sbjct: 104 LNESGVELRPGLIERVLNRCGDAGNLGYR---FFVWAAKQPRYCHSIEVYKSMVKILSKM 160
Query: 246 HELKVPFKLENFVSLASKGVLE-----ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI 300
+ + L + + ++E + F +K A ++L G D +
Sbjct: 161 RQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYV 220
Query: 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHW 360
+ L+ L K+ L +++ R +NL + T+++ R+ K + +
Sbjct: 221 FGCLLDALCKHGS-VKDAAKLFEDMRMRFPVNL--RYFTSLLYGWCRVGKMMEAKYVLVQ 277
Query: 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420
+G +P +V YT L+ + K +A ++ +M + Y V+I+ ++
Sbjct: 278 MNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDR 337
Query: 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459
+ A++ F +++ Y ++ F G++ KC
Sbjct: 338 MEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKC 376
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,545,797
Number of Sequences: 539616
Number of extensions: 7549477
Number of successful extensions: 20112
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 19297
Number of HSP's gapped (non-prelim): 778
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)